Query 046950
Match_columns 239
No_of_seqs 126 out of 1590
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 5.1E-32 1.1E-36 225.1 10.4 161 75-239 3-165 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 7E-30 1.5E-34 215.8 15.1 222 13-239 4-243 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.9 3.3E-27 7.2E-32 202.8 14.8 194 27-239 2-222 (306)
4 PF12847 Methyltransf_18: Meth 99.0 1E-09 2.2E-14 79.9 6.6 65 175-239 2-77 (112)
5 PRK06922 hypothetical protein; 98.8 2.7E-08 5.9E-13 91.9 9.4 104 132-238 377-493 (677)
6 PRK08287 cobalt-precorrin-6Y C 98.7 4.8E-08 1E-12 78.0 7.3 67 172-238 29-103 (187)
7 PF13847 Methyltransf_31: Meth 98.7 5E-08 1.1E-12 75.2 6.2 65 174-238 3-79 (152)
8 PRK14103 trans-aconitate 2-met 98.7 1.1E-07 2.4E-12 79.6 8.8 74 161-238 19-95 (255)
9 TIGR03587 Pse_Me-ase pseudamin 98.6 1.9E-07 4.2E-12 75.6 8.4 67 172-238 41-111 (204)
10 PF05175 MTS: Methyltransferas 98.6 1.7E-07 3.7E-12 73.7 7.6 65 174-238 31-104 (170)
11 PRK01683 trans-aconitate 2-met 98.5 5.2E-07 1.1E-11 75.6 9.3 75 161-238 21-99 (258)
12 TIGR03533 L3_gln_methyl protei 98.5 2.1E-07 4.6E-12 79.2 6.6 65 174-238 121-195 (284)
13 PRK15001 SAM-dependent 23S rib 98.5 2.9E-07 6.2E-12 81.1 7.6 75 161-238 218-304 (378)
14 PRK04457 spermidine synthase; 98.5 1.6E-07 3.5E-12 79.0 5.6 66 173-238 65-142 (262)
15 PRK15451 tRNA cmo(5)U34 methyl 98.5 5.7E-07 1.2E-11 75.0 8.8 66 173-238 55-131 (247)
16 COG2890 HemK Methylase of poly 98.5 4.3E-07 9.4E-12 77.1 7.7 62 177-238 113-182 (280)
17 PRK11805 N5-glutamine S-adenos 98.5 2.3E-07 5.1E-12 79.8 6.1 63 176-238 135-207 (307)
18 COG4106 Tam Trans-aconitate me 98.5 2.9E-07 6.3E-12 73.7 5.7 86 148-237 8-97 (257)
19 TIGR02752 MenG_heptapren 2-hep 98.5 6E-07 1.3E-11 73.9 7.5 67 172-238 43-120 (231)
20 TIGR00740 methyltransferase, p 98.5 4E-07 8.6E-12 75.5 6.4 66 173-238 52-128 (239)
21 TIGR00536 hemK_fam HemK family 98.4 7E-07 1.5E-11 76.0 8.0 63 176-238 116-188 (284)
22 TIGR02021 BchM-ChlM magnesium 98.4 1.8E-06 3.9E-11 70.6 9.3 101 135-238 17-125 (219)
23 COG2226 UbiE Methylase involve 98.4 5.6E-07 1.2E-11 74.2 6.2 66 174-239 51-126 (238)
24 TIGR02469 CbiT precorrin-6Y C5 98.4 1.5E-06 3.2E-11 64.0 7.7 67 172-238 17-94 (124)
25 COG2813 RsmC 16S RNA G1207 met 98.4 1.2E-06 2.7E-11 73.9 7.9 75 161-238 148-230 (300)
26 smart00828 PKS_MT Methyltransf 98.4 7.4E-07 1.6E-11 73.0 6.4 63 176-238 1-73 (224)
27 TIGR00138 gidB 16S rRNA methyl 98.4 7.3E-07 1.6E-11 70.9 5.7 64 175-238 43-115 (181)
28 PRK00107 gidB 16S rRNA methylt 98.4 1E-06 2.2E-11 70.5 6.4 65 174-238 45-118 (187)
29 PRK14966 unknown domain/N5-glu 98.3 1.5E-06 3.2E-11 77.1 7.8 66 173-238 250-325 (423)
30 TIGR03534 RF_mod_PrmC protein- 98.3 1.8E-06 4E-11 71.7 7.9 65 174-238 87-160 (251)
31 PTZ00098 phosphoethanolamine N 98.3 1.8E-06 3.8E-11 72.8 7.6 74 161-238 42-123 (263)
32 COG2242 CobL Precorrin-6B meth 98.3 1.9E-06 4.1E-11 67.9 7.0 67 172-238 32-108 (187)
33 PF08242 Methyltransf_12: Meth 98.3 1.7E-07 3.6E-12 66.8 0.6 60 179-238 1-72 (99)
34 PRK09489 rsmC 16S ribosomal RN 98.3 2.2E-06 4.7E-11 74.8 7.7 64 175-238 197-267 (342)
35 PRK01544 bifunctional N5-gluta 98.3 1E-06 2.3E-11 80.7 5.9 64 175-238 139-212 (506)
36 PLN02244 tocopherol O-methyltr 98.3 2.4E-06 5.2E-11 74.6 7.9 65 173-238 117-192 (340)
37 PF01209 Ubie_methyltran: ubiE 98.3 1.1E-06 2.3E-11 72.7 5.4 67 172-238 45-122 (233)
38 PF13649 Methyltransf_25: Meth 98.3 7.6E-07 1.7E-11 63.7 4.0 61 178-238 1-73 (101)
39 PRK13944 protein-L-isoaspartat 98.3 4.1E-06 9E-11 67.9 8.3 67 172-238 70-148 (205)
40 PRK11207 tellurite resistance 98.3 2.4E-06 5.3E-11 68.8 6.8 73 161-238 20-101 (197)
41 PRK09328 N5-glutamine S-adenos 98.3 3.9E-06 8.4E-11 70.8 8.3 66 173-238 107-181 (275)
42 TIGR00080 pimt protein-L-isoas 98.3 4.5E-06 9.7E-11 68.1 8.2 74 162-238 68-152 (215)
43 TIGR03704 PrmC_rel_meth putati 98.2 3.4E-06 7.3E-11 70.6 7.4 64 175-238 87-159 (251)
44 PRK13942 protein-L-isoaspartat 98.2 5.3E-06 1.1E-10 67.6 8.4 75 161-238 66-151 (212)
45 PLN02233 ubiquinone biosynthes 98.2 8.4E-06 1.8E-10 68.6 9.8 67 172-238 71-151 (261)
46 PF08241 Methyltransf_11: Meth 98.2 3.1E-06 6.7E-11 59.0 5.9 59 179-238 1-66 (95)
47 COG4123 Predicted O-methyltran 98.2 1.7E-06 3.6E-11 71.5 5.0 67 172-238 42-121 (248)
48 PLN02336 phosphoethanolamine N 98.2 5.4E-06 1.2E-10 75.6 8.1 72 163-238 258-338 (475)
49 TIGR02072 BioC biotin biosynth 98.2 3.5E-06 7.7E-11 69.2 6.3 65 174-238 34-104 (240)
50 PLN03075 nicotianamine synthas 98.2 5E-06 1.1E-10 70.7 7.2 66 173-238 122-201 (296)
51 PRK11036 putative S-adenosyl-L 98.2 5.1E-06 1.1E-10 69.6 7.0 64 173-238 43-118 (255)
52 PRK10258 biotin biosynthesis p 98.2 1.2E-05 2.6E-10 67.1 9.2 63 174-238 42-109 (251)
53 PF13659 Methyltransf_26: Meth 98.2 2.9E-06 6.3E-11 62.0 4.7 62 176-238 2-76 (117)
54 PRK05785 hypothetical protein; 98.2 1.2E-05 2.6E-10 66.2 8.9 62 174-238 51-116 (226)
55 PRK08317 hypothetical protein; 98.2 8.4E-06 1.8E-10 66.8 7.9 67 172-238 17-93 (241)
56 TIGR00091 tRNA (guanine-N(7)-) 98.1 4.4E-06 9.6E-11 67.1 5.9 65 174-238 16-93 (194)
57 PRK00216 ubiE ubiquinone/menaq 98.1 1.8E-05 3.9E-10 65.0 9.6 66 173-238 50-127 (239)
58 PRK00121 trmB tRNA (guanine-N( 98.1 3.6E-06 7.8E-11 68.1 5.0 65 174-238 40-117 (202)
59 PHA03411 putative methyltransf 98.1 7.8E-06 1.7E-10 68.6 7.0 64 175-238 65-132 (279)
60 COG2230 Cfa Cyclopropane fatty 98.1 8.1E-06 1.8E-10 68.7 6.9 73 161-237 62-142 (283)
61 TIGR00537 hemK_rel_arch HemK-r 98.1 1E-05 2.2E-10 64.1 7.1 63 174-238 19-88 (179)
62 PRK06202 hypothetical protein; 98.1 2.1E-05 4.6E-10 64.8 9.3 66 173-238 59-135 (232)
63 smart00650 rADc Ribosomal RNA 98.1 8.9E-06 1.9E-10 63.8 6.6 72 162-238 4-83 (169)
64 PRK14121 tRNA (guanine-N(7)-)- 98.1 9.5E-06 2.1E-10 71.5 7.4 65 174-238 122-198 (390)
65 PRK07402 precorrin-6B methylas 98.1 1.2E-05 2.7E-10 64.5 7.6 67 172-238 38-115 (196)
66 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.1E-05 2.5E-10 70.1 7.5 65 174-238 113-184 (340)
67 PRK11088 rrmA 23S rRNA methylt 98.1 8.2E-06 1.8E-10 69.0 6.4 64 174-237 85-156 (272)
68 PLN02366 spermidine synthase 98.1 6.5E-06 1.4E-10 70.8 5.7 66 172-238 89-171 (308)
69 TIGR01934 MenG_MenH_UbiE ubiqu 98.1 1.5E-05 3.3E-10 64.7 7.4 66 173-238 38-112 (223)
70 PRK07580 Mg-protoporphyrin IX 98.0 2.2E-05 4.8E-10 64.4 8.1 63 173-238 62-133 (230)
71 PRK14896 ksgA 16S ribosomal RN 98.0 1.7E-05 3.7E-10 66.6 7.4 72 161-237 19-96 (258)
72 PF02353 CMAS: Mycolic acid cy 98.0 8.4E-06 1.8E-10 69.0 5.3 72 161-237 52-132 (273)
73 KOG1271 Methyltransferases [Ge 98.0 9.2E-06 2E-10 63.6 5.0 65 174-238 67-142 (227)
74 PRK01581 speE spermidine synth 98.0 1.1E-05 2.4E-10 70.3 5.7 67 172-238 148-232 (374)
75 PLN02672 methionine S-methyltr 98.0 1.6E-05 3.4E-10 78.2 7.1 63 175-237 119-208 (1082)
76 PRK00274 ksgA 16S ribosomal RN 98.0 1.7E-05 3.6E-10 67.2 6.5 63 161-228 32-98 (272)
77 TIGR00477 tehB tellurite resis 98.0 2.1E-05 4.5E-10 63.3 6.6 72 162-238 21-100 (195)
78 PF07021 MetW: Methionine bios 98.0 8.1E-06 1.8E-10 64.7 4.1 65 173-239 12-82 (193)
79 PF05401 NodS: Nodulation prot 98.0 2.1E-05 4.5E-10 62.6 6.2 66 172-239 41-113 (201)
80 smart00138 MeTrc Methyltransfe 98.0 3.3E-05 7.2E-10 65.1 7.9 66 174-239 99-210 (264)
81 PRK00811 spermidine synthase; 98.0 1.2E-05 2.5E-10 68.5 5.1 66 173-238 75-156 (283)
82 PRK15068 tRNA mo(5)U34 methylt 97.9 2.6E-05 5.5E-10 67.6 7.2 64 174-238 122-195 (322)
83 KOG1540 Ubiquinone biosynthesi 97.9 5.4E-05 1.2E-09 62.4 8.4 64 175-238 101-183 (296)
84 PHA03412 putative methyltransf 97.9 2.6E-05 5.7E-10 64.1 6.3 64 175-238 50-120 (241)
85 PRK14967 putative methyltransf 97.9 3.5E-05 7.5E-10 63.3 6.6 66 172-238 34-107 (223)
86 PRK14968 putative methyltransf 97.9 4.2E-05 9.2E-10 60.5 6.9 64 173-238 22-96 (188)
87 TIGR02081 metW methionine bios 97.9 3.4E-05 7.3E-10 61.9 6.2 64 173-238 12-81 (194)
88 PRK12335 tellurite resistance 97.9 4.3E-05 9.3E-10 65.2 7.2 64 173-238 119-190 (287)
89 PRK00312 pcm protein-L-isoaspa 97.9 6.8E-05 1.5E-09 61.0 8.0 65 172-238 76-150 (212)
90 PRK11873 arsM arsenite S-adeno 97.9 3.9E-05 8.4E-10 64.8 6.7 67 172-238 75-152 (272)
91 PRK00377 cbiT cobalt-precorrin 97.8 4.8E-05 1E-09 61.3 6.7 67 172-238 38-117 (198)
92 PRK03612 spermidine synthase; 97.8 3.1E-05 6.6E-10 71.4 5.8 65 173-238 296-379 (521)
93 PLN02396 hexaprenyldihydroxybe 97.8 2.7E-05 5.9E-10 67.4 5.1 62 175-238 132-204 (322)
94 PRK04148 hypothetical protein; 97.8 5.9E-05 1.3E-09 56.7 6.2 61 174-237 16-82 (134)
95 KOG2904 Predicted methyltransf 97.8 8.3E-05 1.8E-09 61.9 7.5 66 172-237 146-227 (328)
96 PRK13943 protein-L-isoaspartat 97.8 7.8E-05 1.7E-09 64.5 7.7 67 172-238 78-155 (322)
97 PRK11188 rrmJ 23S rRNA methylt 97.8 0.00012 2.7E-09 59.5 8.4 62 172-237 49-122 (209)
98 TIGR00755 ksgA dimethyladenosi 97.8 6.1E-05 1.3E-09 63.0 6.5 69 161-234 19-93 (253)
99 PF01135 PCMT: Protein-L-isoas 97.7 7E-05 1.5E-09 60.8 6.2 75 161-238 62-147 (209)
100 PF08100 Dimerisation: Dimeris 97.7 3.2E-05 7E-10 48.0 3.2 26 30-55 1-27 (51)
101 cd02440 AdoMet_MTases S-adenos 97.7 8.4E-05 1.8E-09 51.7 5.7 61 177-238 1-72 (107)
102 TIGR03840 TMPT_Se_Te thiopurin 97.7 0.00011 2.4E-09 59.9 7.1 63 173-237 33-118 (213)
103 TIGR00406 prmA ribosomal prote 97.7 0.00011 2.4E-09 62.7 7.4 65 173-238 158-231 (288)
104 PRK04266 fibrillarin; Provisio 97.7 0.00011 2.5E-09 60.4 7.2 67 172-238 70-147 (226)
105 PLN02781 Probable caffeoyl-CoA 97.7 0.00015 3.2E-09 60.0 7.9 67 172-238 66-150 (234)
106 PRK11705 cyclopropane fatty ac 97.7 0.0001 2.3E-09 65.4 7.3 65 172-237 165-233 (383)
107 PLN02336 phosphoethanolamine N 97.7 0.00011 2.4E-09 67.0 7.7 73 161-238 27-109 (475)
108 PTZ00338 dimethyladenosine tra 97.7 0.00011 2.3E-09 63.0 6.7 72 161-237 26-106 (294)
109 COG0421 SpeE Spermidine syntha 97.7 7.3E-05 1.6E-09 63.4 5.3 67 172-238 74-155 (282)
110 TIGR00438 rrmJ cell division p 97.7 0.00017 3.7E-09 57.5 7.1 63 172-238 30-104 (188)
111 TIGR00452 methyltransferase, p 97.7 0.00021 4.6E-09 61.6 8.0 64 174-238 121-194 (314)
112 PF03848 TehB: Tellurite resis 97.6 0.00016 3.4E-09 57.9 6.7 72 161-237 20-99 (192)
113 PF02390 Methyltransf_4: Putat 97.6 8.4E-05 1.8E-09 59.8 5.1 53 176-228 19-78 (195)
114 PRK13168 rumA 23S rRNA m(5)U19 97.6 6.7E-05 1.4E-09 67.9 5.0 64 173-238 296-373 (443)
115 PLN02823 spermine synthase 97.6 9.5E-05 2.1E-09 64.3 5.5 66 173-238 102-182 (336)
116 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00012 2.6E-09 62.4 6.0 76 160-238 8-96 (296)
117 TIGR00417 speE spermidine synt 97.6 9.7E-05 2.1E-09 62.5 5.3 66 173-238 71-151 (270)
118 COG2263 Predicted RNA methylas 97.6 0.00016 3.4E-09 57.2 5.8 64 174-238 45-114 (198)
119 PRK00517 prmA ribosomal protei 97.6 0.00019 4.1E-09 60.0 6.8 59 173-237 118-184 (250)
120 PLN02585 magnesium protoporphy 97.6 0.00013 2.8E-09 62.9 5.8 61 175-238 145-218 (315)
121 PF06325 PrmA: Ribosomal prote 97.6 0.00015 3.3E-09 61.9 6.1 61 173-237 160-230 (295)
122 PRK10909 rsmD 16S rRNA m(2)G96 97.6 0.00015 3.3E-09 58.4 5.8 64 174-238 53-127 (199)
123 COG2264 PrmA Ribosomal protein 97.6 0.00013 2.8E-09 62.0 5.5 49 166-215 154-203 (300)
124 TIGR03438 probable methyltrans 97.6 0.00016 3.5E-09 62.1 6.1 57 173-229 62-127 (301)
125 PRK03522 rumB 23S rRNA methylu 97.5 0.00021 4.6E-09 61.7 6.5 63 174-238 173-246 (315)
126 PRK11727 23S rRNA mA1618 methy 97.5 0.00026 5.6E-09 61.2 6.1 64 175-238 115-195 (321)
127 PRK13255 thiopurine S-methyltr 97.5 0.00029 6.2E-09 57.7 6.0 63 173-237 36-121 (218)
128 PF13489 Methyltransf_23: Meth 97.4 0.00048 1E-08 52.8 6.8 39 172-212 20-59 (161)
129 PRK14902 16S rRNA methyltransf 97.4 0.00041 8.8E-09 62.9 6.6 67 172-238 248-326 (444)
130 COG2518 Pcm Protein-L-isoaspar 97.4 0.00095 2.1E-08 53.8 7.8 72 162-238 63-144 (209)
131 PRK10901 16S rRNA methyltransf 97.4 0.00049 1.1E-08 62.0 6.8 66 173-238 243-319 (427)
132 PTZ00146 fibrillarin; Provisio 97.4 0.00065 1.4E-08 57.7 7.1 77 161-238 119-208 (293)
133 KOG2899 Predicted methyltransf 97.3 0.00038 8.3E-09 57.0 5.1 53 161-214 46-99 (288)
134 PRK00536 speE spermidine synth 97.3 0.00041 9E-09 58.2 5.5 63 172-238 70-145 (262)
135 KOG0820 Ribosomal RNA adenine 97.3 0.00082 1.8E-08 56.0 6.5 73 160-237 47-128 (315)
136 PF01596 Methyltransf_3: O-met 97.3 0.00062 1.3E-08 55.2 5.8 67 172-238 43-127 (205)
137 KOG1270 Methyltransferases [Co 97.2 0.00022 4.7E-09 59.1 2.9 61 176-238 91-164 (282)
138 PF05724 TPMT: Thiopurine S-me 97.2 0.00044 9.4E-09 56.6 4.7 64 172-237 35-121 (218)
139 COG0220 Predicted S-adenosylme 97.2 0.00047 1E-08 56.7 4.6 53 176-228 50-109 (227)
140 PF05185 PRMT5: PRMT5 arginine 97.2 0.0014 3.1E-08 59.3 7.6 97 133-237 151-263 (448)
141 KOG1500 Protein arginine N-met 97.2 0.0012 2.6E-08 56.6 6.6 62 175-237 178-248 (517)
142 PF01564 Spermine_synth: Sperm 97.1 0.00043 9.3E-09 57.7 3.7 67 172-238 74-156 (246)
143 COG2227 UbiG 2-polyprenyl-3-me 97.1 0.00035 7.6E-09 57.3 3.0 62 174-237 59-129 (243)
144 TIGR00479 rumA 23S rRNA (uraci 97.1 0.00051 1.1E-08 61.9 4.2 65 172-238 290-368 (431)
145 TIGR02085 meth_trns_rumB 23S r 97.1 0.00055 1.2E-08 60.6 4.3 63 174-238 233-306 (374)
146 PRK13256 thiopurine S-methyltr 97.1 0.0018 3.8E-08 53.3 6.7 62 174-237 43-129 (226)
147 TIGR01177 conserved hypothetic 97.1 0.0018 3.8E-08 56.4 7.0 65 172-238 180-254 (329)
148 TIGR01983 UbiG ubiquinone bios 97.0 0.0011 2.4E-08 54.1 5.3 63 174-238 45-118 (224)
149 KOG1541 Predicted protein carb 97.0 0.00054 1.2E-08 55.4 3.1 63 172-237 46-117 (270)
150 PRK05134 bifunctional 3-demeth 97.0 0.0021 4.5E-08 52.9 6.6 63 174-238 48-120 (233)
151 PF09445 Methyltransf_15: RNA 97.0 0.00041 8.9E-09 54.0 2.0 62 176-239 1-76 (163)
152 PF10294 Methyltransf_16: Puta 96.9 0.0018 4E-08 51.0 5.4 67 172-238 43-125 (173)
153 KOG1499 Protein arginine N-met 96.9 0.0015 3.3E-08 56.3 4.9 64 173-237 59-132 (346)
154 TIGR00095 RNA methyltransferas 96.9 0.00087 1.9E-08 53.6 3.3 63 175-238 50-127 (189)
155 TIGR00478 tly hemolysin TlyA f 96.9 0.0047 1E-07 50.9 7.5 46 174-220 75-122 (228)
156 TIGR01444 fkbM_fam methyltrans 96.9 0.0029 6.3E-08 47.7 6.0 52 177-228 1-59 (143)
157 PF08123 DOT1: Histone methyla 96.9 0.0017 3.8E-08 52.5 4.8 74 162-238 33-128 (205)
158 PLN02476 O-methyltransferase 96.8 0.0014 3E-08 55.5 4.2 67 172-238 116-200 (278)
159 PRK14904 16S rRNA methyltransf 96.8 0.0029 6.3E-08 57.3 6.5 66 173-238 249-324 (445)
160 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.0012 2.7E-08 63.0 4.1 64 174-238 538-614 (702)
161 PF12147 Methyltransf_20: Puta 96.8 0.0033 7.2E-08 53.1 6.1 65 174-238 135-215 (311)
162 PRK15128 23S rRNA m(5)C1962 me 96.8 0.0017 3.6E-08 57.9 4.4 65 173-238 219-299 (396)
163 TIGR02143 trmA_only tRNA (urac 96.7 0.0016 3.4E-08 57.3 3.8 51 176-228 199-256 (353)
164 KOG3420 Predicted RNA methylas 96.7 0.0018 4E-08 49.0 3.5 62 175-238 49-120 (185)
165 PRK11760 putative 23S rRNA C24 96.7 0.0059 1.3E-07 53.0 6.9 64 172-237 209-275 (357)
166 PRK05031 tRNA (uracil-5-)-meth 96.6 0.0017 3.7E-08 57.2 3.4 51 176-228 208-265 (362)
167 TIGR00563 rsmB ribosomal RNA s 96.6 0.0044 9.5E-08 55.9 5.9 67 172-238 236-315 (426)
168 COG4262 Predicted spermidine s 96.6 0.0061 1.3E-07 53.0 6.2 64 173-237 288-370 (508)
169 PF13679 Methyltransf_32: Meth 96.5 0.0033 7.2E-08 47.7 4.1 56 173-228 24-93 (141)
170 COG2519 GCD14 tRNA(1-methylade 96.5 0.012 2.6E-07 48.8 7.4 88 148-238 67-169 (256)
171 PF00398 RrnaAD: Ribosomal RNA 96.5 0.012 2.6E-07 49.5 7.5 64 160-228 19-87 (262)
172 PRK14901 16S rRNA methyltransf 96.4 0.007 1.5E-07 54.7 6.2 66 173-238 251-331 (434)
173 PF08003 Methyltransf_9: Prote 96.4 0.014 3.1E-07 49.7 7.3 32 174-206 115-146 (315)
174 PRK01544 bifunctional N5-gluta 96.3 0.005 1.1E-07 56.7 4.5 53 174-226 347-406 (506)
175 COG4122 Predicted O-methyltran 96.3 0.0086 1.9E-07 48.9 5.3 67 172-238 57-138 (219)
176 COG0030 KsgA Dimethyladenosine 96.3 0.026 5.7E-07 47.2 8.2 68 161-231 20-91 (259)
177 TIGR00446 nop2p NOL1/NOP2/sun 96.3 0.012 2.7E-07 49.5 6.4 66 173-238 70-146 (264)
178 PRK14903 16S rRNA methyltransf 96.3 0.011 2.3E-07 53.5 6.3 67 172-238 235-313 (431)
179 PF02527 GidB: rRNA small subu 96.2 0.0087 1.9E-07 47.7 4.8 62 177-239 51-122 (184)
180 PLN02589 caffeoyl-CoA O-methyl 96.0 0.0091 2E-07 49.8 4.4 67 172-238 77-162 (247)
181 PF02475 Met_10: Met-10+ like- 96.0 0.011 2.3E-07 47.8 4.5 66 173-238 100-175 (200)
182 TIGR00006 S-adenosyl-methyltra 96.0 0.027 5.8E-07 48.4 7.1 75 161-238 10-98 (305)
183 PF07757 AdoMet_MTase: Predict 96.0 0.008 1.7E-07 43.1 3.2 31 174-206 58-88 (112)
184 KOG2361 Predicted methyltransf 95.9 0.0086 1.9E-07 49.2 3.5 63 176-238 73-150 (264)
185 PF04816 DUF633: Family of unk 95.9 0.012 2.6E-07 47.6 4.3 61 178-238 1-72 (205)
186 COG0357 GidB Predicted S-adeno 95.8 0.019 4E-07 46.8 5.2 64 175-239 68-142 (215)
187 PF08704 GCD14: tRNA methyltra 95.6 0.066 1.4E-06 44.6 7.7 89 147-238 12-119 (247)
188 PF07091 FmrO: Ribosomal RNA m 95.5 0.031 6.7E-07 46.4 5.6 65 174-238 105-177 (251)
189 PRK04338 N(2),N(2)-dimethylgua 95.5 0.016 3.5E-07 51.5 4.2 64 175-238 58-131 (382)
190 PF01170 UPF0020: Putative RNA 95.4 0.032 6.8E-07 44.2 5.2 67 172-238 26-112 (179)
191 KOG3191 Predicted N6-DNA-methy 95.4 0.03 6.4E-07 44.2 4.6 64 175-238 44-116 (209)
192 KOG3010 Methyltransferase [Gen 95.4 0.021 4.6E-07 47.0 4.0 42 172-215 31-73 (261)
193 PF05148 Methyltransf_8: Hypot 95.3 0.073 1.6E-06 43.1 6.7 92 135-239 31-129 (219)
194 KOG4589 Cell division protein 94.9 0.07 1.5E-06 42.3 5.5 54 171-228 66-121 (232)
195 PF06080 DUF938: Protein of un 94.8 0.049 1.1E-06 43.9 4.6 37 172-208 22-59 (204)
196 PF01795 Methyltransf_5: MraW 94.7 0.081 1.8E-06 45.5 6.0 66 160-228 9-80 (310)
197 PRK11783 rlmL 23S rRNA m(2)G24 94.7 0.09 2E-06 50.5 6.9 77 159-238 177-309 (702)
198 KOG1661 Protein-L-isoaspartate 94.6 0.096 2.1E-06 42.3 5.8 73 166-238 74-168 (237)
199 COG0293 FtsJ 23S rRNA methylas 94.6 0.11 2.4E-06 41.9 6.2 63 161-229 34-97 (205)
200 COG3963 Phospholipid N-methylt 94.6 0.093 2E-06 40.9 5.4 78 157-237 34-122 (194)
201 COG4976 Predicted methyltransf 94.5 0.039 8.5E-07 45.2 3.2 68 144-215 94-165 (287)
202 KOG3115 Methyltransferase-like 94.2 0.023 5.1E-07 45.5 1.3 33 175-207 61-93 (249)
203 PF09243 Rsm22: Mitochondrial 93.8 0.079 1.7E-06 44.9 4.1 39 174-212 33-73 (274)
204 PF01728 FtsJ: FtsJ-like methy 93.6 0.065 1.4E-06 42.2 3.1 50 174-227 23-73 (181)
205 COG2384 Predicted SAM-dependen 93.3 0.36 7.8E-06 39.3 6.7 65 174-238 16-91 (226)
206 TIGR02987 met_A_Alw26 type II 93.3 0.096 2.1E-06 48.5 4.0 65 174-238 31-118 (524)
207 KOG3045 Predicted RNA methylas 92.6 0.48 1.1E-05 39.6 6.7 91 134-239 138-235 (325)
208 KOG2730 Methylase [General fun 92.5 0.09 2E-06 42.8 2.3 53 174-228 94-154 (263)
209 TIGR00308 TRM1 tRNA(guanine-26 92.3 0.25 5.3E-06 43.8 5.0 63 176-238 46-120 (374)
210 PF02384 N6_Mtase: N-6 DNA Met 92.2 0.39 8.4E-06 41.2 6.0 66 173-238 45-131 (311)
211 COG1352 CheR Methylase of chem 91.9 2 4.4E-05 36.3 9.8 66 174-239 96-209 (268)
212 COG0275 Predicted S-adenosylme 91.9 0.44 9.4E-06 40.7 5.7 65 161-228 13-84 (314)
213 PF01739 CheR: CheR methyltran 91.5 0.67 1.5E-05 37.3 6.3 66 174-239 31-143 (196)
214 COG3897 Predicted methyltransf 91.4 0.63 1.4E-05 37.3 5.8 66 172-238 77-148 (218)
215 PF04672 Methyltransf_19: S-ad 91.3 0.84 1.8E-05 38.4 6.8 56 174-229 68-133 (267)
216 COG4076 Predicted RNA methylas 90.7 0.57 1.2E-05 37.4 4.9 60 176-237 34-101 (252)
217 PF03602 Cons_hypoth95: Conser 90.1 0.22 4.7E-06 39.6 2.3 64 174-238 42-120 (183)
218 COG2265 TrmA SAM-dependent met 90.0 0.58 1.3E-05 42.3 5.1 65 172-238 291-368 (432)
219 PF03291 Pox_MCEL: mRNA cappin 89.4 0.57 1.2E-05 40.9 4.5 64 174-238 62-151 (331)
220 KOG1975 mRNA cap methyltransfe 88.3 0.88 1.9E-05 39.3 4.7 54 173-228 116-183 (389)
221 PRK10742 putative methyltransf 88.1 1 2.2E-05 37.5 4.9 73 161-238 76-170 (250)
222 PF05219 DREV: DREV methyltran 87.7 1 2.2E-05 37.8 4.6 62 174-238 94-157 (265)
223 COG5459 Predicted rRNA methyla 87.5 0.16 3.4E-06 44.3 -0.2 33 175-207 114-147 (484)
224 COG0116 Predicted N6-adenine-s 86.5 2 4.3E-05 38.1 6.0 76 160-238 180-305 (381)
225 PF03141 Methyltransf_29: Puta 86.2 0.37 8.1E-06 43.8 1.4 23 173-195 116-138 (506)
226 PF04989 CmcI: Cephalosporin h 86.2 1.6 3.5E-05 35.3 4.9 55 174-228 32-96 (206)
227 KOG2915 tRNA(1-methyladenosine 85.9 4.1 8.9E-05 34.5 7.3 90 146-238 76-183 (314)
228 PF09339 HTH_IclR: IclR helix- 85.7 0.57 1.2E-05 28.8 1.7 32 38-69 6-51 (52)
229 PF04072 LCM: Leucine carboxyl 85.4 4.8 0.0001 31.7 7.3 56 173-228 77-141 (183)
230 PF03059 NAS: Nicotianamine sy 84.5 1.6 3.5E-05 37.0 4.4 64 175-238 121-198 (276)
231 PF05958 tRNA_U5-meth_tr: tRNA 84.4 0.65 1.4E-05 40.8 2.1 47 177-225 199-252 (352)
232 PRK10611 chemotaxis methyltran 83.7 2.4 5.1E-05 36.2 5.1 65 175-239 116-230 (287)
233 KOG1709 Guanidinoacetate methy 83.5 5.8 0.00013 32.5 6.9 66 172-237 99-174 (271)
234 PF05206 TRM13: Methyltransfer 83.2 1.9 4.2E-05 36.2 4.3 37 172-208 16-57 (259)
235 PF13578 Methyltransf_24: Meth 83.1 0.43 9.4E-06 33.8 0.4 60 179-238 1-75 (106)
236 PF05971 Methyltransf_10: Prot 82.5 2.2 4.7E-05 36.7 4.4 55 175-230 103-171 (299)
237 smart00346 HTH_ICLR helix_turn 82.2 2.7 5.8E-05 28.7 4.1 44 38-84 8-65 (91)
238 KOG2187 tRNA uracil-5-methyltr 82.2 1.3 2.8E-05 40.6 3.0 55 172-228 381-445 (534)
239 PF04445 SAM_MT: Putative SAM- 81.2 2 4.2E-05 35.6 3.6 73 161-238 63-157 (234)
240 PF14338 Mrr_N: Mrr N-terminal 80.4 1.9 4E-05 30.0 2.8 29 56-88 60-88 (92)
241 COG2520 Predicted methyltransf 79.6 2.2 4.8E-05 37.3 3.6 64 174-238 188-262 (341)
242 PF12692 Methyltransf_17: S-ad 79.2 11 0.00025 28.8 6.8 31 176-206 30-60 (160)
243 KOG3924 Putative protein methy 78.9 2.2 4.8E-05 37.8 3.3 67 172-238 190-278 (419)
244 COG1414 IclR Transcriptional r 78.7 2.3 5.1E-05 35.3 3.4 46 37-85 6-65 (246)
245 KOG0822 Protein kinase inhibit 78.4 8.7 0.00019 35.6 7.0 63 175-237 368-444 (649)
246 KOG1562 Spermidine synthase [A 77.9 1.2 2.7E-05 37.9 1.5 66 172-238 119-201 (337)
247 PRK11569 transcriptional repre 77.7 2.7 5.8E-05 35.5 3.5 46 37-85 30-89 (274)
248 PLN02668 indole-3-acetate carb 77.6 3.8 8.3E-05 36.5 4.5 35 174-208 63-112 (386)
249 PF02636 Methyltransf_28: Puta 75.6 3.1 6.7E-05 34.6 3.3 33 175-207 19-59 (252)
250 KOG4058 Uncharacterized conser 75.5 3 6.5E-05 32.0 2.8 57 174-231 72-137 (199)
251 KOG1331 Predicted methyltransf 75.0 2.6 5.6E-05 35.8 2.6 61 172-236 43-107 (293)
252 TIGR03439 methyl_EasF probable 74.8 6.7 0.00015 34.0 5.2 56 174-229 76-144 (319)
253 PF11312 DUF3115: Protein of u 74.5 6.2 0.00013 34.0 4.8 32 175-206 87-138 (315)
254 KOG2651 rRNA adenine N-6-methy 74.2 7.6 0.00016 34.5 5.3 38 172-210 151-188 (476)
255 COG1565 Uncharacterized conser 73.9 6.9 0.00015 34.4 5.0 59 141-207 51-118 (370)
256 PRK10163 DNA-binding transcrip 73.7 3.9 8.5E-05 34.5 3.4 45 38-85 28-86 (271)
257 KOG1663 O-methyltransferase [S 72.7 20 0.00044 29.5 7.1 57 172-228 71-136 (237)
258 PF01861 DUF43: Protein of unk 72.4 9.5 0.00021 31.7 5.2 63 174-237 44-117 (243)
259 PRK09834 DNA-binding transcrip 71.9 4.8 0.0001 33.7 3.6 49 37-88 13-75 (263)
260 TIGR02431 pcaR_pcaU beta-ketoa 71.5 4.1 9E-05 33.7 3.1 46 37-87 11-70 (248)
261 COG0742 N6-adenine-specific me 70.3 9.8 0.00021 30.3 4.7 63 175-238 44-120 (187)
262 COG4742 Predicted transcriptio 69.8 4.8 0.0001 33.8 3.0 53 31-90 9-75 (260)
263 PRK15090 DNA-binding transcrip 68.1 5.8 0.00013 33.1 3.2 44 39-86 18-75 (257)
264 PF11968 DUF3321: Putative met 67.8 3.3 7.1E-05 33.8 1.6 53 176-239 53-111 (219)
265 COG1189 Predicted rRNA methyla 66.8 11 0.00023 31.3 4.4 60 162-224 69-130 (245)
266 COG1092 Predicted SAM-dependen 66.8 6.8 0.00015 35.0 3.5 62 175-238 218-296 (393)
267 TIGR00027 mthyl_TIGR00027 meth 65.3 13 0.00028 31.2 4.8 54 173-228 80-143 (260)
268 COG2521 Predicted archaeal met 65.0 9.2 0.0002 31.8 3.6 63 174-237 134-210 (287)
269 KOG2793 Putative N2,N2-dimethy 62.5 8.6 0.00019 32.1 3.2 40 174-214 86-125 (248)
270 COG0500 SmtA SAM-dependent met 62.3 12 0.00026 26.8 3.7 50 178-228 52-109 (257)
271 PF13463 HTH_27: Winged helix 61.8 9.4 0.0002 24.3 2.7 29 56-84 38-68 (68)
272 COG1088 RfbB dTDP-D-glucose 4, 61.7 19 0.00041 31.1 5.0 48 181-228 5-62 (340)
273 COG1064 AdhP Zn-dependent alco 61.6 9.9 0.00022 33.3 3.5 65 172-237 164-234 (339)
274 TIGR03329 Phn_aa_oxid putative 61.4 11 0.00024 34.2 4.0 34 176-209 25-60 (460)
275 COG3315 O-Methyltransferase in 61.0 14 0.00029 31.8 4.2 54 173-228 91-154 (297)
276 PF05891 Methyltransf_PK: AdoM 60.6 4.4 9.5E-05 33.1 1.1 64 174-238 55-128 (218)
277 COG1733 Predicted transcriptio 59.0 23 0.00049 26.0 4.6 75 13-88 10-91 (120)
278 cd07153 Fur_like Ferric uptake 58.8 16 0.00035 26.1 3.8 15 56-70 41-55 (116)
279 KOG2940 Predicted methyltransf 58.6 17 0.00036 30.2 4.1 41 173-214 71-112 (325)
280 PF14947 HTH_45: Winged helix- 58.3 9.4 0.0002 25.5 2.3 28 56-88 39-66 (77)
281 smart00550 Zalpha Z-DNA-bindin 58.0 21 0.00045 23.2 3.9 45 36-82 7-66 (68)
282 PRK09273 hypothetical protein; 56.8 17 0.00038 29.4 3.9 43 173-215 61-103 (211)
283 COG1255 Uncharacterized protei 56.7 48 0.001 24.3 5.7 60 173-237 12-75 (129)
284 PF08461 HTH_12: Ribonuclease 56.5 19 0.00042 23.3 3.5 26 56-85 38-63 (66)
285 PF12840 HTH_20: Helix-turn-he 55.9 17 0.00038 22.8 3.1 40 30-70 5-58 (61)
286 PRK06719 precorrin-2 dehydroge 54.1 43 0.00092 25.7 5.6 62 174-238 12-76 (157)
287 PRK11933 yebU rRNA (cytosine-C 54.1 40 0.00088 31.0 6.3 66 173-238 112-189 (470)
288 PF06406 StbA: StbA protein; 54.0 37 0.0008 29.3 5.8 38 172-209 270-309 (318)
289 PF14314 Methyltrans_Mon: Viru 53.2 28 0.0006 33.4 5.2 39 160-202 312-350 (675)
290 KOG4300 Predicted methyltransf 52.6 17 0.00037 29.7 3.2 62 175-237 77-150 (252)
291 TIGR00689 rpiB_lacA_lacB sugar 52.3 15 0.00033 28.0 2.8 53 174-226 54-108 (144)
292 PF14394 DUF4423: Domain of un 52.1 35 0.00077 26.7 4.9 58 25-86 22-87 (171)
293 KOG2666 UDP-glucose/GDP-mannos 51.9 15 0.00032 32.0 2.9 32 176-207 2-35 (481)
294 TIGR01120 rpiB ribose 5-phosph 51.1 16 0.00035 27.7 2.8 42 174-215 55-96 (143)
295 PF10672 Methyltrans_SAM: S-ad 50.9 25 0.00055 30.0 4.2 64 174-238 123-201 (286)
296 PRK13512 coenzyme A disulfide 49.7 22 0.00049 32.0 4.0 31 176-206 2-34 (438)
297 PF02502 LacAB_rpiB: Ribose/Ga 49.3 11 0.00024 28.5 1.6 54 173-226 54-109 (140)
298 KOG2918 Carboxymethyl transfer 48.7 30 0.00065 29.9 4.2 41 172-212 85-127 (335)
299 PF14881 Tubulin_3: Tubulin do 48.2 20 0.00044 28.3 3.0 44 161-206 65-113 (180)
300 PRK05571 ribose-5-phosphate is 48.1 19 0.00042 27.5 2.8 50 177-226 60-111 (148)
301 PRK10857 DNA-binding transcrip 47.4 43 0.00094 26.0 4.7 32 49-82 24-69 (164)
302 KOG2920 Predicted methyltransf 47.1 16 0.00035 31.0 2.4 35 173-208 115-149 (282)
303 COG1568 Predicted methyltransf 47.0 72 0.0016 27.4 6.1 46 39-89 36-82 (354)
304 PF01022 HTH_5: Bacterial regu 46.9 21 0.00045 21.2 2.3 30 37-68 4-47 (47)
305 COG0735 Fur Fe2+/Zn2+ uptake r 46.9 31 0.00068 26.1 3.8 44 40-83 42-88 (145)
306 PF03514 GRAS: GRAS domain fam 46.7 20 0.00042 31.9 3.0 45 161-208 100-151 (374)
307 PF07992 Pyr_redox_2: Pyridine 46.7 26 0.00056 27.3 3.5 30 177-206 1-30 (201)
308 PF01475 FUR: Ferric uptake re 46.4 22 0.00047 25.7 2.8 43 40-82 29-74 (120)
309 PF04820 Trp_halogenase: Trypt 46.1 25 0.00055 32.0 3.7 32 177-208 1-35 (454)
310 PF07101 DUF1363: Protein of u 45.9 7.5 0.00016 27.3 0.2 29 178-206 6-39 (124)
311 PHA01634 hypothetical protein 45.4 27 0.00059 26.2 3.1 31 174-206 28-59 (156)
312 TIGR02147 Fsuc_second hypothet 45.2 50 0.0011 28.0 5.1 58 25-86 120-185 (271)
313 TIGR01470 cysG_Nterm siroheme 45.1 43 0.00094 26.9 4.6 62 175-238 9-75 (205)
314 PRK10141 DNA-binding transcrip 45.0 35 0.00075 25.0 3.6 42 28-70 9-64 (117)
315 PRK05562 precorrin-2 dehydroge 44.6 48 0.001 27.2 4.8 64 174-238 24-91 (223)
316 PF02981 FokI_N: Restriction e 43.9 12 0.00026 28.3 1.1 31 56-89 112-142 (145)
317 COG5631 Predicted transcriptio 43.0 81 0.0018 24.6 5.4 63 22-85 63-147 (199)
318 PF03686 UPF0146: Uncharacteri 43.0 28 0.00061 25.9 2.9 60 173-237 12-75 (127)
319 PF05050 Methyltransf_21: Meth 42.4 30 0.00064 25.9 3.1 27 180-206 1-31 (167)
320 PF01358 PARP_regulatory: Poly 41.1 31 0.00068 29.4 3.2 55 173-228 57-115 (294)
321 PF01638 HxlR: HxlR-like helix 41.0 17 0.00037 24.9 1.5 34 56-89 39-74 (90)
322 PF03492 Methyltransf_7: SAM d 40.5 24 0.00051 30.8 2.5 66 172-237 14-112 (334)
323 KOG1501 Arginine N-methyltrans 40.2 30 0.00065 31.5 3.1 32 174-206 66-97 (636)
324 PRK12615 galactose-6-phosphate 40.1 31 0.00067 27.1 2.9 42 174-215 56-97 (171)
325 COG3432 Predicted transcriptio 39.3 23 0.00051 24.9 1.9 32 56-88 51-82 (95)
326 COG0698 RpiB Ribose 5-phosphat 39.3 32 0.0007 26.4 2.8 41 175-215 58-98 (151)
327 KOG1098 Putative SAM-dependent 39.1 51 0.0011 31.4 4.5 43 166-209 37-80 (780)
328 PRK06718 precorrin-2 dehydroge 39.0 72 0.0016 25.6 5.0 63 174-238 9-76 (202)
329 PTZ00215 ribose 5-phosphate is 39.0 32 0.0007 26.4 2.8 40 176-215 62-101 (151)
330 TIGR03739 PRTRC_D PRTRC system 38.8 1E+02 0.0022 26.6 6.2 35 174-208 273-307 (320)
331 PF00549 Ligase_CoA: CoA-ligas 38.8 35 0.00076 26.2 3.0 34 173-206 34-81 (153)
332 KOG1447 GTP-specific succinyl- 38.7 32 0.00069 29.2 2.9 32 175-206 309-344 (412)
333 TIGR01119 lacB galactose-6-pho 38.4 33 0.00072 26.9 2.8 40 176-215 58-97 (171)
334 PF07801 DUF1647: Protein of u 38.1 90 0.002 23.7 5.0 43 189-232 80-126 (142)
335 COG0248 GppA Exopolyphosphatas 37.3 24 0.00052 32.6 2.2 24 160-186 118-141 (492)
336 PRK06475 salicylate hydroxylas 37.2 46 0.00099 29.5 3.9 32 176-207 3-34 (400)
337 TIGR02010 IscR iron-sulfur clu 36.8 79 0.0017 23.4 4.6 27 56-84 45-71 (135)
338 PF02082 Rrf2: Transcriptional 36.3 94 0.002 20.7 4.6 27 56-84 45-71 (83)
339 PRK13917 plasmid segregation p 36.1 1.3E+02 0.0027 26.4 6.4 34 173-208 290-323 (344)
340 KOG1800 Ferredoxin/adrenodoxin 36.0 63 0.0014 29.0 4.4 35 172-206 17-53 (468)
341 COG3355 Predicted transcriptio 36.0 65 0.0014 23.9 3.9 34 37-70 29-76 (126)
342 PRK09564 coenzyme A disulfide 35.9 53 0.0012 29.4 4.2 31 177-207 2-34 (444)
343 cd06060 misato Human Misato sh 35.8 35 0.00075 31.6 2.9 39 161-201 142-184 (493)
344 KOG2782 Putative SAM dependent 35.8 27 0.00058 28.8 1.9 38 174-211 43-80 (303)
345 TIGR02337 HpaR homoprotocatech 35.8 86 0.0019 22.4 4.6 55 35-90 28-98 (118)
346 PF07381 DUF1495: Winged helix 35.6 39 0.00085 23.5 2.5 54 34-88 8-87 (90)
347 PRK08622 galactose-6-phosphate 34.8 39 0.00085 26.5 2.7 42 174-215 56-97 (171)
348 PRK04176 ribulose-1,5-biphosph 34.6 1.1E+02 0.0024 25.4 5.6 32 176-207 26-57 (257)
349 COG2933 Predicted SAM-dependen 34.4 71 0.0015 27.2 4.2 58 172-231 209-266 (358)
350 PRK06847 hypothetical protein; 34.0 59 0.0013 28.2 4.0 32 175-206 4-35 (375)
351 PF13450 NAD_binding_8: NAD(P) 33.9 53 0.0011 21.1 2.9 27 181-208 2-29 (68)
352 PRK06912 acoL dihydrolipoamide 33.9 53 0.0011 29.8 3.8 31 177-207 2-32 (458)
353 PRK08163 salicylate hydroxylas 33.6 58 0.0013 28.6 4.0 33 175-207 4-36 (396)
354 PTZ00383 malate:quinone oxidor 33.5 56 0.0012 30.3 3.9 33 176-208 46-80 (497)
355 PF13601 HTH_34: Winged helix 33.5 24 0.00052 23.8 1.2 49 36-85 1-66 (80)
356 TIGR01118 lacA galactose-6-pho 33.5 33 0.00072 26.0 2.0 33 183-215 63-95 (141)
357 PF06690 DUF1188: Protein of u 33.3 97 0.0021 25.8 4.8 57 175-237 42-101 (252)
358 PRK07236 hypothetical protein; 32.9 63 0.0014 28.4 4.1 33 175-207 6-38 (386)
359 PRK04965 NADH:flavorubredoxin 32.8 61 0.0013 28.4 4.0 31 176-206 3-35 (377)
360 PTZ00318 NADH dehydrogenase-li 32.5 60 0.0013 29.1 3.9 33 174-206 9-41 (424)
361 PLN00124 succinyl-CoA ligase [ 32.4 58 0.0013 29.5 3.7 33 174-206 317-353 (422)
362 smart00347 HTH_MARR helix_turn 32.4 47 0.001 22.4 2.6 36 53-88 41-78 (101)
363 COG1321 TroR Mn-dependent tran 32.2 39 0.00086 25.9 2.3 38 49-90 37-74 (154)
364 KOG3987 Uncharacterized conser 31.7 23 0.00049 29.0 0.9 21 174-194 112-132 (288)
365 cd02190 epsilon_tubulin The tu 31.1 71 0.0015 28.4 4.1 37 162-200 91-132 (379)
366 PRK03902 manganese transport t 31.1 64 0.0014 24.0 3.3 35 50-88 36-70 (142)
367 PRK12613 galactose-6-phosphate 30.9 39 0.00085 25.6 2.0 33 183-215 62-94 (141)
368 PF13412 HTH_24: Winged helix- 30.9 83 0.0018 18.4 3.2 31 36-67 4-48 (48)
369 PF01978 TrmB: Sugar-specific 30.6 35 0.00076 21.8 1.6 34 36-70 9-56 (68)
370 PRK07502 cyclohexadienyl dehyd 30.3 84 0.0018 26.8 4.3 40 175-214 6-48 (307)
371 PRK11639 zinc uptake transcrip 30.3 76 0.0016 24.7 3.7 36 35-70 26-80 (169)
372 PRK11728 hydroxyglutarate oxid 30.2 73 0.0016 28.1 4.1 32 177-208 4-37 (393)
373 PRK09754 phenylpropionate diox 30.2 69 0.0015 28.3 3.9 32 175-206 3-36 (396)
374 cd00286 Tubulin_FtsZ Tubulin/F 29.4 84 0.0018 27.1 4.2 37 161-199 80-121 (328)
375 KOG3851 Sulfide:quinone oxidor 29.2 71 0.0015 28.1 3.5 34 174-207 38-73 (446)
376 PLN02927 antheraxanthin epoxid 29.1 80 0.0017 30.5 4.2 33 174-206 80-112 (668)
377 PRK09126 hypothetical protein; 29.1 72 0.0016 27.9 3.8 31 177-207 5-35 (392)
378 COG0045 SucC Succinyl-CoA synt 28.8 72 0.0016 28.4 3.6 33 174-206 281-317 (387)
379 PF01494 FAD_binding_3: FAD bi 28.4 67 0.0015 27.1 3.4 31 177-207 3-33 (356)
380 PRK06753 hypothetical protein; 28.4 77 0.0017 27.5 3.8 31 177-207 2-32 (373)
381 cd00423 Pterin_binding Pterin 28.0 1.4E+02 0.003 24.9 5.1 42 172-214 34-93 (258)
382 PRK07417 arogenate dehydrogena 28.0 80 0.0017 26.5 3.7 59 177-238 2-63 (279)
383 PRK07608 ubiquinone biosynthes 27.9 81 0.0018 27.5 3.9 32 176-207 6-37 (388)
384 cd08283 FDH_like_1 Glutathione 27.8 99 0.0021 27.2 4.4 42 172-213 182-225 (386)
385 PHA00738 putative HTH transcri 27.6 93 0.002 22.4 3.4 18 53-70 43-60 (108)
386 PRK10637 cysG siroheme synthas 27.5 1E+02 0.0022 28.1 4.6 65 174-238 11-78 (457)
387 PF02541 Ppx-GppA: Ppx/GppA ph 27.5 30 0.00064 29.2 1.0 13 173-185 111-123 (285)
388 PRK09462 fur ferric uptake reg 27.5 98 0.0021 23.3 3.8 15 56-70 58-72 (148)
389 cd06059 Tubulin The tubulin su 27.2 1E+02 0.0022 27.4 4.3 38 161-200 80-122 (382)
390 KOG3201 Uncharacterized conser 27.2 7.7 0.00017 30.4 -2.3 64 175-238 30-109 (201)
391 PRK07045 putative monooxygenas 27.1 81 0.0017 27.6 3.7 31 176-206 6-36 (388)
392 PF02254 TrkA_N: TrkA-N domain 27.0 91 0.002 21.8 3.4 48 179-229 2-52 (116)
393 TIGR02032 GG-red-SF geranylger 26.8 91 0.002 25.6 3.9 30 178-207 3-32 (295)
394 PF12802 MarR_2: MarR family; 26.7 77 0.0017 19.4 2.7 34 37-70 7-55 (62)
395 PRK11908 NAD-dependent epimera 26.6 1.5E+02 0.0033 25.4 5.3 51 177-228 3-57 (347)
396 PRK08621 galactose-6-phosphate 26.6 46 0.001 25.3 1.8 33 183-215 63-95 (142)
397 PRK06617 2-octaprenyl-6-methox 26.5 88 0.0019 27.4 3.9 31 177-207 3-33 (374)
398 PRK07588 hypothetical protein; 26.4 80 0.0017 27.7 3.6 30 177-206 2-31 (391)
399 COG0287 TyrA Prephenate dehydr 25.9 1.4E+02 0.003 25.4 4.7 62 176-238 4-70 (279)
400 PRK08850 2-octaprenyl-6-methox 25.7 88 0.0019 27.6 3.8 31 176-206 5-35 (405)
401 PF01269 Fibrillarin: Fibrilla 25.4 2E+02 0.0043 23.7 5.3 66 172-237 71-148 (229)
402 PRK07538 hypothetical protein; 25.4 90 0.002 27.7 3.8 31 177-207 2-32 (413)
403 KOG2078 tRNA modification enzy 25.3 26 0.00056 31.7 0.2 54 172-227 247-312 (495)
404 PLN02206 UDP-glucuronate decar 25.3 1.8E+02 0.004 26.3 5.8 62 175-237 119-188 (442)
405 KOG2614 Kynurenine 3-monooxyge 25.2 1E+02 0.0022 27.8 3.9 33 176-208 3-35 (420)
406 COG4820 EutJ Ethanolamine util 25.2 37 0.0008 27.6 1.1 12 175-186 141-152 (277)
407 PRK05714 2-octaprenyl-3-methyl 25.1 95 0.0021 27.4 3.9 31 177-207 4-34 (405)
408 TIGR02702 SufR_cyano iron-sulf 25.0 1.1E+02 0.0024 24.4 3.9 49 39-88 5-71 (203)
409 TIGR02053 MerA mercuric reduct 24.9 95 0.0021 28.1 3.9 29 178-206 3-31 (463)
410 COG3682 Predicted transcriptio 24.9 83 0.0018 23.3 2.8 28 52-82 40-67 (123)
411 COG1252 Ndh NADH dehydrogenase 24.9 96 0.0021 28.0 3.7 32 175-206 3-36 (405)
412 COG1660 Predicted P-loop-conta 24.8 1.7E+02 0.0037 24.8 4.9 49 133-188 207-255 (286)
413 PRK05868 hypothetical protein; 24.8 94 0.002 27.3 3.7 31 176-206 2-32 (372)
414 cd00092 HTH_CRP helix_turn_hel 24.6 1.8E+02 0.0039 17.9 4.7 23 56-82 45-67 (67)
415 COG1889 NOP1 Fibrillarin-like 24.6 2E+02 0.0043 23.6 5.0 58 172-229 74-136 (231)
416 COG1232 HemY Protoporphyrinoge 24.5 1.1E+02 0.0023 28.1 4.0 31 177-207 2-34 (444)
417 COG4883 Uncharacterized protei 24.3 2.9E+02 0.0063 24.1 6.2 95 107-212 68-170 (500)
418 PRK07251 pyridine nucleotide-d 24.3 1E+02 0.0022 27.6 3.9 30 177-206 5-34 (438)
419 PF09012 FeoC: FeoC like trans 24.2 78 0.0017 20.4 2.4 15 56-70 34-48 (69)
420 TIGR03169 Nterm_to_SelD pyridi 24.2 96 0.0021 26.9 3.7 30 177-206 1-33 (364)
421 PRK08849 2-octaprenyl-3-methyl 23.9 99 0.0021 27.1 3.7 30 177-206 5-34 (384)
422 PRK11883 protoporphyrinogen ox 23.8 1.1E+02 0.0023 27.3 4.0 30 177-206 2-33 (451)
423 PRK06370 mercuric reductase; V 23.8 1.1E+02 0.0023 27.8 4.0 30 177-206 7-36 (463)
424 TIGR01884 cas_HTH CRISPR locus 23.5 1.1E+02 0.0024 24.3 3.6 26 56-83 177-202 (203)
425 TIGR03140 AhpF alkyl hydropero 23.5 1.1E+02 0.0024 28.3 4.1 31 175-205 212-242 (515)
426 TIGR01988 Ubi-OHases Ubiquinon 23.5 1.1E+02 0.0025 26.4 4.0 30 178-207 2-31 (385)
427 TIGR02133 RPI_actino ribose 5- 23.4 35 0.00076 26.1 0.6 40 176-215 59-98 (148)
428 TIGR02360 pbenz_hydroxyl 4-hyd 23.4 1E+02 0.0022 27.2 3.7 32 176-207 3-34 (390)
429 COG4301 Uncharacterized conser 23.3 1.3E+02 0.0028 25.5 3.8 36 173-208 77-116 (321)
430 smart00419 HTH_CRP helix_turn_ 23.2 1E+02 0.0022 17.5 2.6 24 52-80 24-47 (48)
431 TIGR01181 dTDP_gluc_dehyt dTDP 23.1 1.4E+02 0.0031 24.8 4.4 47 183-229 6-62 (317)
432 PTZ00117 malate dehydrogenase; 23.0 1.8E+02 0.0038 25.2 5.0 64 174-238 4-79 (319)
433 TIGR01984 UbiH 2-polyprenyl-6- 22.9 1.2E+02 0.0026 26.4 4.0 30 178-207 2-32 (382)
434 TIGR00824 EIIA-man PTS system, 22.6 1.4E+02 0.0031 21.4 3.7 40 174-213 60-101 (116)
435 PRK08020 ubiF 2-octaprenyl-3-m 22.5 1.2E+02 0.0026 26.6 3.9 32 176-207 6-37 (391)
436 cd00006 PTS_IIA_man PTS_IIA, P 22.5 1.2E+02 0.0026 21.9 3.4 41 174-214 59-101 (122)
437 TIGR01423 trypano_reduc trypan 22.3 1E+02 0.0023 28.3 3.6 29 178-206 6-35 (486)
438 PRK08013 oxidoreductase; Provi 22.2 1.2E+02 0.0026 26.8 3.9 30 177-206 5-34 (400)
439 PF12627 PolyA_pol_RNAbd: Prob 22.1 1.2E+02 0.0026 18.9 2.9 30 15-44 27-56 (64)
440 PRK15181 Vi polysaccharide bio 22.0 2.2E+02 0.0047 24.6 5.4 52 176-228 16-80 (348)
441 PRK07364 2-octaprenyl-6-methox 21.9 1.3E+02 0.0028 26.6 4.0 33 175-207 18-50 (415)
442 PLN02661 Putative thiazole syn 21.9 1.2E+02 0.0027 26.7 3.8 32 176-207 93-125 (357)
443 COG1233 Phytoene dehydrogenase 21.9 1.4E+02 0.0031 27.4 4.4 33 176-208 4-36 (487)
444 TIGR03219 salicylate_mono sali 21.8 1.2E+02 0.0025 26.9 3.8 31 177-207 2-33 (414)
445 PRK11031 guanosine pentaphosph 21.7 64 0.0014 29.8 2.1 14 175-188 133-146 (496)
446 PLN02852 ferredoxin-NADP+ redu 21.7 1.4E+02 0.0031 27.6 4.3 34 174-207 25-60 (491)
447 KOG2798 Putative trehalase [Ca 21.6 1.8E+02 0.0039 25.4 4.6 27 175-201 151-177 (369)
448 PRK05976 dihydrolipoamide dehy 21.5 1.2E+02 0.0027 27.5 3.9 30 177-206 6-35 (472)
449 TIGR01789 lycopene_cycl lycope 21.4 1.2E+02 0.0027 26.6 3.8 31 178-208 2-34 (370)
450 COG1179 Dinucleotide-utilizing 21.2 3.2E+02 0.0068 23.0 5.7 35 175-209 30-65 (263)
451 TIGR00738 rrf2_super rrf2 fami 21.2 2E+02 0.0043 20.8 4.4 28 56-85 45-72 (132)
452 TIGR03143 AhpF_homolog putativ 21.1 1.1E+02 0.0025 28.5 3.6 31 177-207 6-36 (555)
453 PRK09496 trkA potassium transp 21.1 2.2E+02 0.0048 25.5 5.4 61 176-238 232-303 (453)
454 PF01047 MarR: MarR family; I 21.0 86 0.0019 19.1 2.0 15 56-70 37-51 (59)
455 cd00315 Cyt_C5_DNA_methylase C 21.0 1.7E+02 0.0036 24.7 4.3 59 177-238 2-68 (275)
456 PRK06185 hypothetical protein; 21.0 1.2E+02 0.0026 26.6 3.7 32 176-207 7-38 (407)
457 PTZ00153 lipoamide dehydrogena 20.9 1.2E+02 0.0026 29.3 3.8 30 177-206 118-147 (659)
458 PF12831 FAD_oxidored: FAD dep 20.8 1E+02 0.0022 27.8 3.1 30 178-207 2-31 (428)
459 PRK07818 dihydrolipoamide dehy 20.7 1.3E+02 0.0028 27.3 3.9 30 177-206 6-35 (466)
460 PF12242 Eno-Rase_NADH_b: NAD( 20.7 1E+02 0.0022 20.8 2.3 36 172-207 36-75 (78)
461 PLN02166 dTDP-glucose 4,6-dehy 20.6 2.9E+02 0.0062 25.0 6.1 62 175-237 120-189 (436)
462 COG0391 Uncharacterized conser 20.5 1.2E+02 0.0027 26.3 3.5 28 174-201 6-36 (323)
463 TIGR02148 Fibro_Slime fibro-sl 20.5 42 0.00091 23.3 0.5 17 170-186 31-47 (90)
464 PRK07494 2-octaprenyl-6-methox 20.4 1.4E+02 0.003 26.0 3.9 32 176-207 8-39 (388)
465 TIGR01989 COQ6 Ubiquinone bios 20.4 1.4E+02 0.003 26.9 4.0 30 177-206 2-35 (437)
466 PRK06116 glutathione reductase 20.3 1.4E+02 0.0029 27.0 3.9 31 177-207 6-36 (450)
467 PRK07535 methyltetrahydrofolat 20.2 1.8E+02 0.0038 24.4 4.3 64 145-214 12-86 (261)
468 smart00529 HTH_DTXR Helix-turn 20.1 83 0.0018 21.4 2.0 35 50-88 13-47 (96)
469 PRK06474 hypothetical protein; 20.0 1.5E+02 0.0033 23.2 3.7 56 32-87 8-82 (178)
470 PRK08243 4-hydroxybenzoate 3-m 20.0 1.4E+02 0.003 26.3 3.8 32 176-207 3-34 (392)
471 cd02188 gamma_tubulin Gamma-tu 20.0 1.4E+02 0.003 27.1 3.9 33 166-199 125-162 (431)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.97 E-value=5.1e-32 Score=225.09 Aligned_cols=161 Identities=30% Similarity=0.636 Sum_probs=141.1
Q ss_pred ccccccCccccccccCcC-CcccchhhcccCccccchhhhhHHhhcCCCCChhHHhhCCChhhhcccCchHHHHHHHHHh
Q 046950 75 EEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMA 153 (239)
Q Consensus 75 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~e~~~~~~~~~~~f~~~m~ 153 (239)
+++|++|++|+.|..+.+ .++..++.++..+.++++|.+|.+++++|+ ++|+.++|.++|+|+.++|+..+.|+.+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999997776554 578888777666778999999999999999 899999998999999999999999999999
Q ss_pred hchhhhH-HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCCCCCC
Q 046950 154 SDSEIMT-TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPP 232 (239)
Q Consensus 154 ~~~~~~~-~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~~p~ 232 (239)
..+.... +.++ ..++ +++.++|||||||+|+++.+++++||+++++++|+|+|++.+++.+||++++||||+++|.
T Consensus 82 ~~~~~~~~~~~~-~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILL-EAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHH-HHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhh-cccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9888777 7777 8888 7888999999999999999999999999999999999999988899999999999999999
Q ss_pred ceEEEeC
Q 046950 233 ADAFLFK 239 (239)
Q Consensus 233 ~D~~~l~ 239 (239)
+|+|+|+
T Consensus 159 ~D~~~l~ 165 (241)
T PF00891_consen 159 ADVYLLR 165 (241)
T ss_dssp ESEEEEE
T ss_pred ccceeee
Confidence 9999985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.97 E-value=7e-30 Score=215.81 Aligned_cols=222 Identities=27% Similarity=0.394 Sum_probs=193.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHhChhhHhhhCCCCCCHHH----------------HHHHHHhCCceeeeccCCCcc
Q 046950 13 FQGQAQLYKLMFNHLSSMSLKCAIELGIADIIHSHGRAITLSE----------------LMRLLVHSGCFKKTKVNGEEE 76 (239)
Q Consensus 13 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~e----------------lLr~L~~~g~l~~~~~~~~~~ 76 (239)
.+...++++++.++..+++|++|+|||+||+|+.++.|..++. +||.|+++++++....+ .+
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~- 81 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE- 81 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-
Confidence 3466889999999999999999999999999998643322221 99999999999988631 12
Q ss_pred ccccCcccccccc-CcCCcccchhhcccCccccchhhhhHHhhcCCCCChhHHhhCCChhhhcccCchHHHHHHHHHhhc
Q 046950 77 AYGLTAASTLLIK-DKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMASD 155 (239)
Q Consensus 77 ~y~~t~~s~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~e~~~~~~~~~~~f~~~m~~~ 155 (239)
.|+++++++.+.+ ++..+++.++.....+..++.|..+.++++.++ .+|..++|...|+|...++.....|+++|...
T Consensus 82 ~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l 160 (342)
T KOG3178|consen 82 VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFL 160 (342)
T ss_pred eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence 7999999996664 444689999888877888999999999999998 68999999888999999988889999999998
Q ss_pred hhhhHHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCC-CCeEEEEccCCCCCCCce
Q 046950 156 SEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEA-DNLKYIAGDMFRFIPPAD 234 (239)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~-~ri~~~~gD~f~~~p~~D 234 (239)
+....+.++ +.+. .|++..+.||||||.|..+..++.+||+++++.+|+|.|++.++.- .+|+++.||+|++.|.+|
T Consensus 161 ~~~~~~~il-~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~d 238 (342)
T KOG3178|consen 161 STLVMKKIL-EVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGD 238 (342)
T ss_pred HHHHHHhhh-hhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcC
Confidence 888877788 8887 5888999999999999999999999999999999999999998865 889999999999999999
Q ss_pred EEEeC
Q 046950 235 AFLFK 239 (239)
Q Consensus 235 ~~~l~ 239 (239)
+|+||
T Consensus 239 aI~mk 243 (342)
T KOG3178|consen 239 AIWMK 243 (342)
T ss_pred eEEEE
Confidence 99986
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.95 E-value=3.3e-27 Score=202.78 Aligned_cols=194 Identities=23% Similarity=0.376 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCcccccccc-Cc
Q 046950 27 LSSMSLKCAIELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIK-DK 91 (239)
Q Consensus 27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~-~~ 91 (239)
+...+|++|+++||||+|++ +|.|++| +||+|+++|+|++. +++|++|+.++.+.. ++
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~ 74 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTP 74 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCc
Confidence 35789999999999999987 7999988 99999999999987 589999999985554 33
Q ss_pred CC---cccchhhcccCccccchhhhhHHhhcCCCCChhHHhhCCChhhhcccCchHHHHHHHHHh-hchhhhHHHHHHHh
Q 046950 92 PY---CLSPTVSVFVDPFFVAPFQSLSSWFKGTEITLWETVHGIKFWEFMNQNPAINQRFNEAMA-SDSEIMTTFVVKSE 167 (239)
Q Consensus 92 ~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~e~~~~~~~~~~~f~~~m~-~~~~~~~~~~l~~~ 167 (239)
+. ++.++..+.. ......|.+|++.++++ ++|... +++....+.. ..|...|. .......+.++ +.
T Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~--~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~ 144 (306)
T TIGR02716 75 KEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQ--KNFKGQ-----VPYPPVTRED-NLYFEEIHRSNAKFAIQLLL-EE 144 (306)
T ss_pred cchhhhcCchHHHHH-HHHHHHHHhHHHHhcCC--cccccc-----cCCCCCCHHH-HHhHHHHHHhcchhHHHHHH-HH
Confidence 21 2233433321 12235689999999843 345432 2222222223 23444443 44444455566 66
Q ss_pred hhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC-------CCCeEEEEccCCC-CCCCceEEEeC
Q 046950 168 CKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMFR-FIPPADAFLFK 239 (239)
Q Consensus 168 ~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~p~~D~~~l~ 239 (239)
.+ +++..+|||||||+|.+++.+++++|+++++++|+|++++.+++ .+||+++++|+|+ ++|.+|+|+++
T Consensus 145 ~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~ 222 (306)
T TIGR02716 145 AK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 222 (306)
T ss_pred cC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeE
Confidence 66 77788999999999999999999999999999999999887652 5799999999997 56779999864
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.00 E-value=1e-09 Score=79.94 Aligned_cols=65 Identities=28% Similarity=0.568 Sum_probs=54.5
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccC-CC-CCC-CceEEEeC
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDM-FR-FIP-PADAFLFK 239 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~-f~-~~p-~~D~~~l~ 239 (239)
..+|||||||+|.++..+++.+|..+++.+|. |++++.+++ .+||+++.+|+ +. +.+ .+|++++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEEC
Confidence 46899999999999999999999999999999 667776542 68999999999 33 333 49999863
No 5
>PRK06922 hypothetical protein; Provisional
Probab=98.79 E-value=2.7e-08 Score=91.94 Aligned_cols=104 Identities=16% Similarity=0.285 Sum_probs=76.6
Q ss_pred CChhhhcccCchHHHHHHHHHhhchhhh--HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-
Q 046950 132 IKFWEFMNQNPAINQRFNEAMASDSEIM--TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH- 208 (239)
Q Consensus 132 ~~~~e~~~~~~~~~~~f~~~m~~~~~~~--~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~- 208 (239)
..+|+++..+++..++|.+.|....... ..... ..++ +.+..+|||||||+|.++..+++.+|+.+++++|+++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~-~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ 453 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKR-IILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN 453 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHH-HHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence 4678999988888888887775533221 12222 3444 4457899999999999999999999999999999955
Q ss_pred HHhcCCC-----CCCeEEEEccCCC-C--CC-C-ceEEEe
Q 046950 209 AVANLPE-----ADNLKYIAGDMFR-F--IP-P-ADAFLF 238 (239)
Q Consensus 209 vi~~a~~-----~~ri~~~~gD~f~-~--~p-~-~D~~~l 238 (239)
+++.+++ ..+++++.+|..+ + ++ . +|+|++
T Consensus 454 MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 454 VIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred HHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 5766542 3468889999865 2 33 3 899975
No 6
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.70 E-value=4.8e-08 Score=77.98 Aligned_cols=67 Identities=30% Similarity=0.511 Sum_probs=55.9
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCCC-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
.....+|||||||+|.++..+++++|+.+++.+|. |..++.+++ .++++++.+|...+.+. +|++++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 45677999999999999999999999999999999 667666642 35799999998666665 999885
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.67 E-value=5e-08 Score=75.20 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=53.4
Q ss_pred CCCcEEEecCcchHHHHHHH-HHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-C--CCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIIS-EAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-F--IPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~--~p~-~D~~~l 238 (239)
...+|||+|||+|.++..++ +.+|..+++++|+ |++++.++. .+++++..+|+++ + ++. +|+|+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEE
Confidence 45789999999999999999 5689999999999 667777653 4589999999998 3 334 999985
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.66 E-value=1.1e-07 Score=79.60 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=59.7
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCCCCC--CceEEE
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFRFIP--PADAFL 237 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~~~p--~~D~~~ 237 (239)
..++ +.+. .....+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+++++.+|+.+..+ .+|+|+
T Consensus 19 ~~ll-~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLL-ARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHH-HhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 3456 6555 45678999999999999999999999999999999 778887764 468999999865323 399998
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
.
T Consensus 95 ~ 95 (255)
T PRK14103 95 S 95 (255)
T ss_pred E
Confidence 6
No 9
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.61 E-value=1.9e-07 Score=75.64 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=57.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-CCCeEEEEccCCCCCCC--ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~p~--~D~~~l 238 (239)
..+..+|||||||+|..+..+++..|..+++++|+ |+.++.|++ ..++++..+|++++.+. +|+|+.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEE
Confidence 34567899999999999999999999999999999 668888765 45688999999887653 999985
No 10
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.60 E-value=1.7e-07 Score=73.73 Aligned_cols=65 Identities=26% Similarity=0.473 Sum_probs=55.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
...++||+|||+|..+..+++++|+.+++.+|. |.+++.++. .+.++++.+|++++.+ . +|+|+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEE
Confidence 577999999999999999999999999999999 556665542 2239999999999877 4 999985
No 11
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.53 E-value=5.2e-07 Score=75.56 Aligned_cols=75 Identities=20% Similarity=0.397 Sum_probs=60.1
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-CCCeEEEEccCCCCCC--CceEE
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMFRFIP--PADAF 236 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~p--~~D~~ 236 (239)
..++ ..++ ..+..+|||||||+|.++..+++.+|..+++++|+ |..++.+++ ..+++++.+|+.+..+ .+|++
T Consensus 21 ~~ll-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 21 RDLL-ARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHH-hhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 4456 5555 56678999999999999999999999999999999 667777654 4579999999866333 38998
Q ss_pred Ee
Q 046950 237 LF 238 (239)
Q Consensus 237 ~l 238 (239)
+.
T Consensus 98 ~~ 99 (258)
T PRK01683 98 FA 99 (258)
T ss_pred EE
Confidence 75
No 12
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.52 E-value=2.1e-07 Score=79.19 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=55.6
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCC--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~--~D~~~l 238 (239)
+..+|+|+|||+|.++..+++.+|+.+++.+|+ |.+++.++. .++|+++.+|+++++|. +|+|+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEE
Confidence 356899999999999999999999999999999 667766653 36899999999987763 899985
No 13
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.52 E-value=2.9e-07 Score=81.05 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=58.6
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC---------CCCeEEEEccCCCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE---------ADNLKYIAGDMFRFI 230 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~---------~~ri~~~~gD~f~~~ 230 (239)
..++ +.++ .....+|||+|||+|..+..+++++|+.+++.+|.. .+++.+++ ..+++++.+|.++.+
T Consensus 218 rllL-~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 218 RFFM-QHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred HHHH-HhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 3455 6665 222468999999999999999999999999999995 46665542 247999999999876
Q ss_pred C--CceEEEe
Q 046950 231 P--PADAFLF 238 (239)
Q Consensus 231 p--~~D~~~l 238 (239)
+ .+|+|+.
T Consensus 295 ~~~~fDlIls 304 (378)
T PRK15001 295 EPFRFNAVLC 304 (378)
T ss_pred CCCCEEEEEE
Confidence 4 3999985
No 14
>PRK04457 spermidine synthase; Provisional
Probab=98.51 E-value=1.6e-07 Score=79.01 Aligned_cols=66 Identities=18% Similarity=0.373 Sum_probs=56.4
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC---CCCC-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR---FIPP-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~---~~p~-~D~~~l 238 (239)
+.+++|||||||.|.++..+++.+|+.+++++|+ |++++.+++ .+|++++.+|..+ ..+. +|+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 4567999999999999999999999999999999 888887653 4789999999854 3454 999985
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.51 E-value=5.7e-07 Score=75.04 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=54.3
Q ss_pred cCCCcEEEecCcchHHHHHHHH--HCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCCCceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISE--AFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIPPADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~--~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p~~D~~~l 238 (239)
....+|||||||+|..+..+++ .+|+.+++++|. |.+++.++. ..+|+++.+|+.+ +.+.+|++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~ 131 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL 131 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEeh
Confidence 4567999999999999999988 469999999999 778887753 3489999999876 4455888764
No 16
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=4.3e-07 Score=77.06 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=53.6
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCCC-ceEEEe
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
+|+|||||+|..++.++++.|+++++..|+ |.+++.|+. -.|+.++.+|+|++++. +|+|+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe
Confidence 899999999999999999999999999999 667776653 26677777799999886 999974
No 17
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.49 E-value=2.3e-07 Score=79.76 Aligned_cols=63 Identities=25% Similarity=0.448 Sum_probs=54.8
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCC--ceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~--~D~~~l 238 (239)
.+|+|+|||+|.++..+++.+|+.+++.+|+ |.+++.|+. .+||+++.+|+++.+|. +|+|+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEE
Confidence 6899999999999999999999999999999 677776653 36899999999887763 899974
No 18
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.47 E-value=2.9e-07 Score=73.72 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=66.2
Q ss_pred HHHHHhhchhhhHHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-CCCeEEEEcc
Q 046950 148 FNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGD 225 (239)
Q Consensus 148 f~~~m~~~~~~~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD 225 (239)
|.++-...+... ..++ ..++ .....+|+|+|||.|.....|++++|...++++|. |++++.|+. ...++|..+|
T Consensus 8 Yl~F~~eRtRPa-~dLl-a~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 8 YLQFEDERTRPA-RDLL-ARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHhccCcH-HHHH-hhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceeccc
Confidence 333333344432 4466 6666 67789999999999999999999999999999999 778888764 6679999999
Q ss_pred CCCCCC--CceEEE
Q 046950 226 MFRFIP--PADAFL 237 (239)
Q Consensus 226 ~f~~~p--~~D~~~ 237 (239)
+-+=.| .+|+++
T Consensus 84 l~~w~p~~~~dllf 97 (257)
T COG4106 84 LRTWKPEQPTDLLF 97 (257)
T ss_pred HhhcCCCCccchhh
Confidence 877444 377664
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.45 E-value=6e-07 Score=73.88 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=54.0
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
.....+|||||||+|.++..+++.. |+.+++++|+ |..++.+++ .++++++.+|..+ +.|. +|+|++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence 4556799999999999999999986 7789999999 566665542 3579999999976 4553 899875
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.45 E-value=4e-07 Score=75.52 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=54.0
Q ss_pred cCCCcEEEecCcchHHHHHHHHH--CCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCCCceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEA--FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIPPADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p~~D~~~l 238 (239)
....+|||||||+|.++..+++. +|+.+++++|+ |.+++.++. ..+++++.+|+.+ +.+.+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEee
Confidence 35678999999999999999997 48999999999 778877653 3579999999977 4556887654
No 21
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.45 E-value=7e-07 Score=76.03 Aligned_cols=63 Identities=22% Similarity=0.480 Sum_probs=54.2
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCC--ceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~--~D~~~l 238 (239)
.+|+|+|||+|.++..+++.+|+.+++.+|+ +.+++.++. .+|++++.+|++++.+. +|+|+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEE
Confidence 6899999999999999999999999999999 667666553 35799999999998763 899874
No 22
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.41 E-value=1.8e-06 Score=70.60 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=64.0
Q ss_pred hhhcccCchHHHHHHHHHhhchhhhHHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcC
Q 046950 135 WEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANL 213 (239)
Q Consensus 135 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a 213 (239)
|+.+...+.....+...|..........++ +.+.....+..+|||||||+|.++..+++. ..+++++|. |++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLL-DWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 343444333444444444322222233344 333210234689999999999999999886 458999998 6677766
Q ss_pred CC-------CCCeEEEEccCCCCCCCceEEEe
Q 046950 214 PE-------ADNLKYIAGDMFRFIPPADAFLF 238 (239)
Q Consensus 214 ~~-------~~ri~~~~gD~f~~~p~~D~~~l 238 (239)
++ .+++++..+|+.+....+|+++.
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~ 125 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVC 125 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEE
Confidence 53 25899999998664344998875
No 23
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.41 E-value=5.6e-07 Score=74.18 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=56.4
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCCC--ceEEEeC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIPP--ADAFLFK 239 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p~--~D~~~l~ 239 (239)
...+|||||||+|.++..+++..+..+++++|. +.+++.+++ ...|+++.+|..+ |+|. +|+|++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEee
Confidence 478999999999999999999999999999999 568887764 1229999999977 7874 9999863
No 24
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.40 E-value=1.5e-06 Score=63.98 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=52.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC---CCC-CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR---FIP-PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~p-~~D~~~l 238 (239)
.....+|+|||||.|.++..+++++|+.+++.+|. +..++.++. ..+++++.+|... ..+ .+|++++
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEE
Confidence 34456999999999999999999999999999999 555555432 3578999998653 223 3899875
No 25
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.2e-06 Score=73.89 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=59.5
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC------CCCeEEEEccCCCCCCC-
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE------ADNLKYIAGDMFRFIPP- 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~------~~ri~~~~gD~f~~~p~- 232 (239)
..++ +.++ .....+|+|+|||.|..++.+++.+|+.+++.+|.. ..++.++. .++..+...|.++++..
T Consensus 148 ~lLl-~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 148 RLLL-ETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHH-HhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 4456 7777 333449999999999999999999999999999994 46666653 23336788899999886
Q ss_pred ceEEEe
Q 046950 233 ADAFLF 238 (239)
Q Consensus 233 ~D~~~l 238 (239)
+|.|++
T Consensus 225 fd~Iis 230 (300)
T COG2813 225 FDLIIS 230 (300)
T ss_pred ccEEEe
Confidence 999985
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.38 E-value=7.4e-07 Score=72.99 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCCC-ceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIPP-ADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p~-~D~~~l 238 (239)
++|||||||.|.++..+++.+|+.+++.+|+ |..++.++. .++++++.+|+.+ +.+. +|+|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeeh
Confidence 4799999999999999999999999999999 445554442 5689999999966 4455 999873
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.36 E-value=7.3e-07 Score=70.90 Aligned_cols=64 Identities=27% Similarity=0.318 Sum_probs=50.8
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC------CCCeEEEEccCCCC-CC-CceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE------ADNLKYIAGDMFRF-IP-PADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~------~~ri~~~~gD~f~~-~p-~~D~~~l 238 (239)
..+|+|||||+|..+..+++.+|+.+++.+|.. ..++.+++ .++|+++.+|+.+- .. .+|+|+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEe
Confidence 679999999999999999999999999999995 44443331 34699999998662 22 3999875
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.36 E-value=1e-06 Score=70.45 Aligned_cols=65 Identities=28% Similarity=0.322 Sum_probs=52.6
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC-CC-CceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF-IP-PADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~-~p-~~D~~~l 238 (239)
...+|+|||||+|..+..+++++|..+++.+|. +..++.++. .++++++.+|..+- .. .+|+|++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~ 118 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTS 118 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEE
Confidence 367999999999999999999999999999999 556665542 33599999998662 23 3999986
No 29
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.35 E-value=1.5e-06 Score=77.06 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=54.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCC-CC---CceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRF-IP---PADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~-~p---~~D~~~l 238 (239)
....+|+|||||+|.++..+++++|+.+++.+|. |.+++.+++ ..+++++.+|++++ .| .+|+|+.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence 3446899999999999999999999999999999 777776653 44899999999874 33 2899875
No 30
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.34 E-value=1.8e-06 Score=71.70 Aligned_cols=65 Identities=26% Similarity=0.506 Sum_probs=54.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
...+|+|+|||+|.++..+++.+|+.+++++|. +..++.++. .++++++.+|++++.+ . +|+|+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence 346899999999999999999999999999998 566665542 3479999999988765 3 999874
No 31
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.33 E-value=1.8e-06 Score=72.77 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----CCCeEEEEccCCC-CCCC--
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMFR-FIPP-- 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~p~-- 232 (239)
..++ +.+. +.+..+|||||||.|..+..+++.+ ..+++.+|+ |..++.+++ .++|+++.+|+.+ ++|.
T Consensus 42 ~~~l-~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKIL-SDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHH-HhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 3455 5554 5667899999999999999998875 679999999 556665542 4689999999976 5663
Q ss_pred ceEEEe
Q 046950 233 ADAFLF 238 (239)
Q Consensus 233 ~D~~~l 238 (239)
+|+|+.
T Consensus 118 FD~V~s 123 (263)
T PTZ00098 118 FDMIYS 123 (263)
T ss_pred eEEEEE
Confidence 999975
No 32
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.32 E-value=1.9e-06 Score=67.90 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=55.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC---CCCCceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR---FIPPADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~p~~D~~~l 238 (239)
..+..+++|||||+|..+++++..+|..|++.+|. ++.++..+. .++++.+.||.-+ +.|.+|+|++
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFI 108 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFI 108 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEE
Confidence 55678999999999999999999999999999998 445544331 7899999998766 4455899986
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.30 E-value=1.7e-07 Score=66.77 Aligned_cols=60 Identities=27% Similarity=0.536 Sum_probs=40.1
Q ss_pred EEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------C---CCeEEEEccCCCCCC--CceEEEe
Q 046950 179 VDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------A---DNLKYIAGDMFRFIP--PADAFLF 238 (239)
Q Consensus 179 vDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~---~ri~~~~gD~f~~~p--~~D~~~l 238 (239)
||||||+|.++..+++++|..+++++|. |++++.+++ . .++++...|.+...+ .+|+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehh
Confidence 7999999999999999999999999999 668877764 1 235555556555444 4999986
No 34
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.30 E-value=2.2e-06 Score=74.82 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=52.1
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCCCCC-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
..+|+|+|||+|.++..+++++|+.+++.+|. +.+++.++. .-..+++.+|.+...+. +|+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEE
Confidence 45899999999999999999999999999999 456665542 22357788999887665 999985
No 35
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.30 E-value=1e-06 Score=80.71 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=54.8
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCC--ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~--~D~~~l 238 (239)
..+|||||||+|.+++.+++.+|+.+++.+|+ |.+++.++. .+||+++.+|+++..+. +|+|+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence 46899999999999999999999999999999 667776653 46899999999987653 899875
No 36
>PLN02244 tocopherol O-methyltransferase
Probab=98.30 E-value=2.4e-06 Score=74.61 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=52.1
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
....+|||||||+|..+..+++++ +.+++++|+ |..++.+++ .++|+++.+|+.+ +++. +|+|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence 456799999999999999999988 779999999 455554432 4689999999977 5553 999875
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.30 E-value=1.1e-06 Score=72.71 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=46.8
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
.....+|||||||+|..+..+++.. |+.+++++|. |..++.+++ ..+|+++.+|..+ |+|. +|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC 122 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence 3456799999999999999999875 6889999999 668877763 3489999999966 6764 999986
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.29 E-value=7.6e-07 Score=63.69 Aligned_cols=61 Identities=18% Similarity=0.431 Sum_probs=46.7
Q ss_pred EEEecCcchHHHHHHHHHC---CCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCC-CCC--CceEEEe
Q 046950 178 LVDVGGGNGTFSRIISEAF---PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFR-FIP--PADAFLF 238 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~-~~p--~~D~~~l 238 (239)
|||+|||+|..+..+++.+ |+.+++++|+ ++.++.+++ ..+++++.+|+.+ +++ .+|+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999997 6789999998 567776653 2489999999966 332 3999986
No 39
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.27 E-value=4.1e-06 Score=67.89 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=52.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCC---CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIP---PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p---~~D~~~l 238 (239)
.....+|||||||+|..+..+++..+ ..+++.+|. |+.++.+++ .++++++.+|+.+..| .+|+|++
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 34557999999999999999998875 568999999 556655542 3469999999987544 3999885
No 40
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.27 E-value=2.4e-06 Score=68.81 Aligned_cols=73 Identities=30% Similarity=0.361 Sum_probs=54.7
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIPP 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p~ 232 (239)
+.++ +.++ .....+|||||||+|..+..|+++ ..+++++|+ |..++.+++ ..+|++...|+.+ +.+.
T Consensus 20 ~~l~-~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 20 SEVL-EAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred HHHH-Hhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 4455 5555 445679999999999999999986 568999999 566666542 2458899999876 3444
Q ss_pred -ceEEEe
Q 046950 233 -ADAFLF 238 (239)
Q Consensus 233 -~D~~~l 238 (239)
+|+|+.
T Consensus 95 ~fD~I~~ 101 (197)
T PRK11207 95 EYDFILS 101 (197)
T ss_pred CcCEEEE
Confidence 999874
No 41
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.26 E-value=3.9e-06 Score=70.84 Aligned_cols=66 Identities=23% Similarity=0.459 Sum_probs=54.8
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
.+..+|+|+|||+|..+..+++..|+.++++.|. |..++.++. ..+++++.+|++++.+ . +|+|+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence 3567899999999999999999999999999999 455555442 4589999999998765 3 999874
No 42
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.25 E-value=4.5e-06 Score=68.13 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=56.9
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC--
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP-- 231 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p-- 231 (239)
.++ +.++ .....+|||||||+|.++..+++..+ +.+++.+|. |+.++.+++ .++++++.+|..+..+
T Consensus 68 ~~~-~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 68 MMT-ELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHH-HHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 444 5444 45678999999999999999999865 578999998 667766653 3579999999987433
Q ss_pred -CceEEEe
Q 046950 232 -PADAFLF 238 (239)
Q Consensus 232 -~~D~~~l 238 (239)
.+|+|++
T Consensus 145 ~~fD~Ii~ 152 (215)
T TIGR00080 145 APYDRIYV 152 (215)
T ss_pred CCCCEEEE
Confidence 3999886
No 43
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.25 E-value=3.4e-06 Score=70.58 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=52.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC---CCCeEEEEccCCCCCC-----CceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMFRFIP-----PADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~---~~ri~~~~gD~f~~~p-----~~D~~~l 238 (239)
..+++|+|||+|.++..+++..|..+++.+|. |.+++.++. ..+++++.+|+++.++ .+|+++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEE
Confidence 45899999999999999999999999999999 777776653 3346899999987543 3899874
No 44
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.25 E-value=5.3e-06 Score=67.63 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=57.1
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC-
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP- 231 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p- 231 (239)
..++ +.++ .....+|||||||+|..+..+++.. ++.+++.+|. |+.++.+++ .++|+++.+|.++..+
T Consensus 66 ~~~~-~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 66 AIMC-ELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHH-HHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 3344 5554 5567899999999999999998875 4578999999 566666543 4579999999887443
Q ss_pred --CceEEEe
Q 046950 232 --PADAFLF 238 (239)
Q Consensus 232 --~~D~~~l 238 (239)
.||+|++
T Consensus 143 ~~~fD~I~~ 151 (212)
T PRK13942 143 NAPYDRIYV 151 (212)
T ss_pred CCCcCEEEE
Confidence 3999976
No 45
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.24 E-value=8.4e-06 Score=68.60 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=53.7
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC---------CCCeEEEEccCCC-CCCC--ceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMFR-FIPP--ADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~---------~~ri~~~~gD~f~-~~p~--~D~~~ 237 (239)
.....+|||||||+|.++..+++.+ |+.+++.+|. |++++.|++ .++|+++.+|..+ |+|. +|+++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 3456799999999999999999875 6789999999 567776642 3479999999866 6653 99997
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
+
T Consensus 151 ~ 151 (261)
T PLN02233 151 M 151 (261)
T ss_pred E
Confidence 5
No 46
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.23 E-value=3.1e-06 Score=59.02 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=46.8
Q ss_pred EEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC---CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 179 VDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE---ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 179 vDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~---~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
||||||+|..+..++++ |..+++++|.. ..++.+++ ..++++..+|+.+ ++|. +|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccc
Confidence 79999999999999999 99999999994 45666553 5668899999877 6663 999875
No 47
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.22 E-value=1.7e-06 Score=71.54 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=54.4
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC-------CCCeEEEEccCCC---CCC-C-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE-------ADNLKYIAGDMFR---FIP-P-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~-------~~ri~~~~gD~f~---~~p-~-~D~~~l 238 (239)
.+..++|+|+|+|+|..+..+++++++++++++|+. ..++.|+. .+||++++.|+.+ ..+ . +|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 344789999999999999999999999999999994 45554442 8999999999876 233 2 789875
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.19 E-value=5.4e-06 Score=75.59 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCC-CCCC--c
Q 046950 163 VVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFR-FIPP--A 233 (239)
Q Consensus 163 ~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~-~~p~--~ 233 (239)
++ +.+. .....+|||||||+|..+..+++.+ +.+++++|+ |..++.++. ..+++++.+|+++ ++|. +
T Consensus 258 l~-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 258 FV-DKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HH-HhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44 4444 4556799999999999999998876 789999999 456665532 4589999999987 4553 9
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|+|+.
T Consensus 334 D~I~s 338 (475)
T PLN02336 334 DVIYS 338 (475)
T ss_pred EEEEE
Confidence 99975
No 49
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.19 E-value=3.5e-06 Score=69.19 Aligned_cols=65 Identities=25% Similarity=0.451 Sum_probs=52.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC--CCCeEEEEccCCC-CCC-C-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMFR-FIP-P-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--~~ri~~~~gD~f~-~~p-~-~D~~~l 238 (239)
...+|||||||+|.++..+++.+|+.+++++|. |..+..++. .++++++.+|+.+ +.+ . +|+|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEE
Confidence 347899999999999999999999999999999 445554443 3579999999876 333 3 899875
No 50
>PLN03075 nicotianamine synthase; Provisional
Probab=98.19 E-value=5e-06 Score=70.67 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=51.0
Q ss_pred cCCCcEEEecCcchHH--HHHHHHHCCCCeEEEeeh-HHHHhcCCC--------CCCeEEEEccCCCCCC---CceEEEe
Q 046950 173 EGLGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMFRFIP---PADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--------~~ri~~~~gD~f~~~p---~~D~~~l 238 (239)
.++++|+|||||.|-+ +..+++.+|+.+++.+|. |+.++.|+. .+||+|..+|..+..+ .+|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3789999999998844 444446789999999999 566665542 5789999999987432 3999986
No 51
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.17 E-value=5.1e-06 Score=69.56 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=50.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC--CCC-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR--FIP-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~--~~p-~-~D~~~l 238 (239)
....+|||||||+|.++..+++. ..+++++|+ |++++.+++ .++++++.+|+.+ +.+ . +|+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 34579999999999999999987 468999999 677776653 3579999999855 333 3 999986
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.17 E-value=1.2e-05 Score=67.05 Aligned_cols=63 Identities=30% Similarity=0.400 Sum_probs=48.8
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
...+|||||||+|.++..+.+. ..+++++|+ |.+++.++. ...+.++.+|+-+ +.+. +|+|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEE
Confidence 4678999999999999888764 578999999 777777664 2346788999865 4543 899874
No 53
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.16 E-value=2.9e-06 Score=62.02 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=51.2
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC---CCC--CceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR---FIP--PADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~---~~p--~~D~~~l 238 (239)
.+|+|+|||+|.++..+++.. ..+++.+|+ |..++.++. .+|++++.+|+++ +.+ .+|+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 479999999999999999998 889999999 666665542 5789999999987 243 3999986
No 54
>PRK05785 hypothetical protein; Provisional
Probab=98.16 E-value=1.2e-05 Score=66.16 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
...+|||||||+|.++..+++.+ +.+++++|. ++.++.+++. ..++.+|+.+ |++. +|+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEe
Confidence 46799999999999999999987 678999999 6788877643 3467788865 5553 999975
No 55
>PRK08317 hypothetical protein; Provisional
Probab=98.16 E-value=8.4e-06 Score=66.84 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=53.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCC-CCC-C-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFR-FIP-P-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~-~~p-~-~D~~~l 238 (239)
.....+|||||||.|.++..+++.+ |..+++++|+ |..++.++. ..++++..+|+.. +++ . +|+|++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS 93 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence 4567799999999999999999998 8889999999 445554432 4579999999866 444 2 899875
No 56
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.15 E-value=4.4e-06 Score=67.12 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=51.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC---C-CC--CceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR---F-IP--PADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~-~p--~~D~~~l 238 (239)
...++||||||+|.++..+++++|+.+++++|+ +..++.+.. .++|+++.+|+.+ . .| .+|.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 456999999999999999999999999999999 556655532 3589999999865 1 33 2777765
No 57
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.14 E-value=1.8e-05 Score=65.02 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=52.4
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCC-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIP-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p-~-~D~~~l 238 (239)
.+..+|+|||||.|.++..+++.+| +.+++++|+ +..++.+++ ..+++++.+|+.+ +.+ . +|+|++
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTI 127 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEE
Confidence 3457999999999999999999998 789999999 455555442 3579999999977 333 3 899874
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.13 E-value=3.6e-06 Score=68.09 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=52.0
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC--C--CC-C-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR--F--IP-P-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~--~--~p-~-~D~~~l 238 (239)
...+|||||||+|.++..+++.+|+.+++.+|. |+.++.++. ..+++++.+|+.+ + ++ . +|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 467999999999999999999999999999999 556665542 3679999999833 2 33 3 888865
No 59
>PHA03411 putative methyltransferase; Provisional
Probab=98.13 E-value=7.8e-06 Score=68.64 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=53.4
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-CCCeEEEEccCCCCC-CC-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMFRFI-PP-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~-p~-~D~~~l 238 (239)
..+|||+|||+|.++..++++.+..+++++|+ |..++.++. ..+++++.+|+++.. +. +|+|+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEE
Confidence 46899999999999999999988889999999 667776654 457999999998844 33 999875
No 60
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=8.1e-06 Score=68.74 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=56.9
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPP 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~ 232 (239)
+.++ +.+. +++..+|||||||-|.+++-.+++| +.+++.+++ ++..+.+++ .++|++...|+-+-.+.
T Consensus 62 ~~~~-~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 62 DLIL-EKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHH-HhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 4455 6666 7889999999999999999999999 999999999 445554432 56899999998553333
Q ss_pred ceEEE
Q 046950 233 ADAFL 237 (239)
Q Consensus 233 ~D~~~ 237 (239)
+|-|+
T Consensus 138 fDrIv 142 (283)
T COG2230 138 FDRIV 142 (283)
T ss_pred cceee
Confidence 88765
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.11 E-value=1e-05 Score=64.09 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=50.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCCCCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
...+|+|+|||+|.++..+.+..+ +++.+|+ |..++.++. .-+++++.+|+++..+. +|+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEE
Confidence 346899999999999999999887 8999999 666665543 23688999999875544 999875
No 62
>PRK06202 hypothetical protein; Provisional
Probab=98.10 E-value=2.1e-05 Score=64.82 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=47.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHH----CCCCeEEEeeh-HHHHhcCCC---CCCeEEEEccC--CCCCCC-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEA----FPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDM--FRFIPP-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~vi~~a~~---~~ri~~~~gD~--f~~~p~-~D~~~l 238 (239)
.+..+|||||||+|.++..|++. .|+.+++++|+ |.+++.+++ ..++++...+. +...+. +|+|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence 45679999999999998888764 46789999999 778777654 23455555533 222233 999875
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.10 E-value=8.9e-06 Score=63.83 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC----CCCeEEEEccCCC-CCCC--c
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE----ADNLKYIAGDMFR-FIPP--A 233 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~p~--~ 233 (239)
.++ +.++ .....+++|||||.|.++..++++ ..+++.+|.. ..++.+++ .++++++.+|+++ +.+. +
T Consensus 4 ~i~-~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIV-RAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHH-HhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 344 5444 455679999999999999999998 5689999994 45554432 4689999999987 4443 6
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|.++.
T Consensus 79 d~vi~ 83 (169)
T smart00650 79 YKVVG 83 (169)
T ss_pred CEEEE
Confidence 77753
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.10 E-value=9.5e-06 Score=71.47 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCC---CCCCC--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMF---RFIPP--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f---~~~p~--~D~~~l 238 (239)
....+||||||+|.++..+++++|+..++++|+ +.+++.+.. .++|.++.+|.. ..+|. .|.|++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 356899999999999999999999999999999 445444431 457999999973 34553 788775
No 65
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.10 E-value=1.2e-05 Score=64.52 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=52.0
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC---CCC-CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR---FIP-PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~p-~~D~~~l 238 (239)
.....+|+|||||+|.++..+++..|+.+++.+|+ |..++.+++ .++++++.+|..+ .+. .+|.+++
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence 44567999999999999999999999999999999 777776542 3579999999765 232 2565543
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.08 E-value=1.1e-05 Score=70.06 Aligned_cols=65 Identities=32% Similarity=0.424 Sum_probs=53.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC---CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~---~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
...+|||||||+|.++..+++.+|..+++++|. |++++.+++ ..+++++.+|+.+ +++. +|+|+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEE
Confidence 456999999999999999999999899999999 566666653 4579999999876 4543 999875
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.08 E-value=8.2e-06 Score=69.02 Aligned_cols=64 Identities=22% Similarity=0.408 Sum_probs=51.8
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCC---eEEEeeh-HHHHhcCCC-CCCeEEEEccCCC-CCCC--ceEEE
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGI---KCTVLDL-PHAVANLPE-ADNLKYIAGDMFR-FIPP--ADAFL 237 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l---~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~p~--~D~~~ 237 (239)
...+|||||||+|.++..+++.+|.. +++++|+ +.+++.|++ ..++++..+|..+ |++. +|+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEE
Confidence 44689999999999999999998854 6899999 667777654 4678999999876 5553 89986
No 68
>PLN02366 spermidine synthase
Probab=98.07 E-value=6.5e-06 Score=70.77 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=51.9
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCC-CeEEEeeh-HHHHhcCCC----------CCCeEEEEccCCC---CCC-C-ce
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPG-IKCTVLDL-PHAVANLPE----------ADNLKYIAGDMFR---FIP-P-AD 234 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~p-~-~D 234 (239)
.+++++||+||||.|..+.++++. |. .+++++|+ |.|++.+++ .+|++++.+|.++ ..+ . +|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 356889999999999999999875 65 57999999 447776543 4699999999654 443 3 99
Q ss_pred EEEe
Q 046950 235 AFLF 238 (239)
Q Consensus 235 ~~~l 238 (239)
+|++
T Consensus 168 vIi~ 171 (308)
T PLN02366 168 AIIV 171 (308)
T ss_pred EEEE
Confidence 9985
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.05 E-value=1.5e-05 Score=64.72 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCC-CeEEEeeh-HHHHhcCCC----CCCeEEEEccCCC-CCC--CceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPG-IKCTVLDL-PHAVANLPE----ADNLKYIAGDMFR-FIP--PADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~p--~~D~~~l 238 (239)
.+..+|+|+|||.|.++..+++.+|. .+++++|. |.+++.+++ ..+++++.+|+.+ +.+ .+|++++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEE
Confidence 35679999999999999999999997 89999999 556665543 4579999999977 333 2899875
No 70
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.04 E-value=2.2e-05 Score=64.36 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=48.6
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCC-CceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIP-PADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p-~~D~~~l 238 (239)
.+..+|||||||+|.++..+++..+ +++++|. +..++.+++ .++|++..+|+ +..+ .+|+++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-ESLLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-hhccCCcCEEEE
Confidence 4567999999999999999998754 5999999 566666653 25899999994 4333 3898864
No 71
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.03 E-value=1.7e-05 Score=66.61 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=53.9
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC----CCCeEEEEccCCC-CCCCce
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE----ADNLKYIAGDMFR-FIPPAD 234 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~p~~D 234 (239)
..++ +..+ .....+|+|||||.|.++..++++. .+++++|+. ..++.+++ .++++++.+|+++ ++|.+|
T Consensus 19 ~~iv-~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 19 DRIV-EYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHH-HhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 3445 5444 4456799999999999999999984 478999994 45554432 4689999999987 566677
Q ss_pred EEE
Q 046950 235 AFL 237 (239)
Q Consensus 235 ~~~ 237 (239)
.++
T Consensus 94 ~Vv 96 (258)
T PRK14896 94 KVV 96 (258)
T ss_pred EEE
Confidence 765
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.02 E-value=8.4e-06 Score=68.97 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=47.9
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCC-------CCCCeEEEEccCCCCCC-
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLP-------EADNLKYIAGDMFRFIP- 231 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~-------~~~ri~~~~gD~f~~~p- 231 (239)
..++ +..+ +.+..+|||||||-|.++..++++| +++++++.+. +..+.++ ..+++++...|+.+ ++
T Consensus 52 ~~~~-~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~ 126 (273)
T PF02353_consen 52 DLLC-EKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG 126 (273)
T ss_dssp HHHH-TTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHH-HHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence 3455 6655 6778899999999999999999999 8999999994 3444332 26789999999865 44
Q ss_pred CceEEE
Q 046950 232 PADAFL 237 (239)
Q Consensus 232 ~~D~~~ 237 (239)
.+|.|+
T Consensus 127 ~fD~Iv 132 (273)
T PF02353_consen 127 KFDRIV 132 (273)
T ss_dssp S-SEEE
T ss_pred CCCEEE
Confidence 488876
No 73
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.01 E-value=9.2e-06 Score=63.56 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=49.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCC--CCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRF--IPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~--~p~-~D~~~l 238 (239)
...+|||+|||+|+++..|++.-=.-+.+.+|. +.+++-|+. .+-|+|+..|+++| .+. +|+|+=
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee
Confidence 445999999999999999999764445788888 345554442 45599999999996 344 898863
No 74
>PRK01581 speE spermidine synthase; Validated
Probab=98.00 E-value=1.1e-05 Score=70.29 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=54.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------------CCCeEEEEccCCC---CCCC-c
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMFR---FIPP-A 233 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------------~~ri~~~~gD~f~---~~p~-~ 233 (239)
..++++||+||||.|..+.++++..|..+++++|+ |+|++.|+. .+|++++.+|.++ ..+. +
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45678999999999999999998666678999999 667776652 5799999999876 2333 9
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|+|++
T Consensus 228 DVIIv 232 (374)
T PRK01581 228 DVIII 232 (374)
T ss_pred cEEEE
Confidence 99986
No 75
>PLN02672 methionine S-methyltransferase
Probab=97.98 E-value=1.6e-05 Score=78.18 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=52.4
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----------------------CCCeEEEEccCCCCCC
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----------------------ADNLKYIAGDMFRFIP 231 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----------------------~~ri~~~~gD~f~~~p 231 (239)
..+|+|||||+|..++.+++++|+.+++.+|+ |.+++.|+. .+||+++.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999999999999 556655421 2589999999998654
Q ss_pred ----CceEEE
Q 046950 232 ----PADAFL 237 (239)
Q Consensus 232 ----~~D~~~ 237 (239)
.+|+|+
T Consensus 199 ~~~~~fDlIV 208 (1082)
T PLN02672 199 DNNIELDRIV 208 (1082)
T ss_pred ccCCceEEEE
Confidence 389986
No 76
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.98 E-value=1.7e-05 Score=67.18 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=49.1
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC---CCCeEEEEccCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMFR 228 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~---~~ri~~~~gD~f~ 228 (239)
..++ +.++ .....+|+|||||+|.++..++++.+ +++++|. |..++.+++ .++++++.+|+.+
T Consensus 32 ~~i~-~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 32 DKIV-DAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred HHHH-HhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 3445 5444 44567999999999999999999986 7899999 556665543 3689999999876
No 77
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.97 E-value=2.1e-05 Score=63.29 Aligned_cols=72 Identities=24% Similarity=0.200 Sum_probs=51.3
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCC-CCCC-c
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFR-FIPP-A 233 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~-~~p~-~ 233 (239)
.++ +.++ .....+|||||||+|..+..++++ ..+++++|. |.+++.++. .-++++...|+.. +.+. +
T Consensus 21 ~l~-~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 21 AVR-EAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHH-HHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 445 5554 344679999999999999999985 578999999 556665432 1237777888754 3344 8
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|+|+.
T Consensus 96 D~I~~ 100 (195)
T TIGR00477 96 DFIFS 100 (195)
T ss_pred CEEEE
Confidence 98864
No 78
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.97 E-value=8.1e-06 Score=64.74 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=49.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCCCCCCeEEEEccCCCC---CCC--ceEEEeC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLPEADNLKYIAGDMFRF---IPP--ADAFLFK 239 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~~~~ri~~~~gD~f~~---~p~--~D~~~l~ 239 (239)
++.++|||+|||.|.++..|.+. .++++.++|+.+ -+..+- ..+++++.+|+-+. +|. ||.++|+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 45689999999999999888875 699999999843 233222 56689999998763 553 8999874
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.96 E-value=2.1e-05 Score=62.65 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=49.7
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----CCCeEEEEccCCCCCCC--ceEEEeC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMFRFIPP--ADAFLFK 239 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----~~ri~~~~gD~f~~~p~--~D~~~l~ 239 (239)
-....+++|||||.|.+...|+.++ -+.++.|. |.+++.|++ .++|+++..|+-+..|. ||+|+++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 4456789999999999999999986 36899999 778887763 57899999999777674 9999874
No 80
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.96 E-value=3.3e-05 Score=65.09 Aligned_cols=66 Identities=14% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCCcEEEecCcchH----HHHHHHHHCC-----CCeEEEeeh-HHHHhcCCCC---------------------------
Q 046950 174 GLGSLVDVGGGNGT----FSRIISEAFP-----GIKCTVLDL-PHAVANLPEA--------------------------- 216 (239)
Q Consensus 174 ~~~~vvDVGGG~G~----~~~~l~~~~P-----~l~~~~~Dl-p~vi~~a~~~--------------------------- 216 (239)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999996 5667777665 578999999 6677766541
Q ss_pred ------CCeEEEEccCCCCCC--C-ceEEEeC
Q 046950 217 ------DNLKYIAGDMFRFIP--P-ADAFLFK 239 (239)
Q Consensus 217 ------~ri~~~~gD~f~~~p--~-~D~~~l~ 239 (239)
++|+|..+|+.++.+ . +|+|+.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr 210 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCR 210 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence 379999999998533 3 9999863
No 81
>PRK00811 spermidine synthase; Provisional
Probab=97.95 E-value=1.2e-05 Score=68.52 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=52.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----------CCCeEEEEccCCCCC---CC-ceEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMFRFI---PP-ADAF 236 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~---p~-~D~~ 236 (239)
+.+++||+||||.|..+.++++..+..+++++|+ |.+++.+++ .+|++++.+|..+-+ +. +|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 5678999999999999999998655668999999 667776652 468999999987622 23 9999
Q ss_pred Ee
Q 046950 237 LF 238 (239)
Q Consensus 237 ~l 238 (239)
++
T Consensus 155 i~ 156 (283)
T PRK00811 155 IV 156 (283)
T ss_pred EE
Confidence 85
No 82
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.95 E-value=2.6e-05 Score=67.65 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhc------C-CCCCCeEEEEccCCC-CCCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVAN------L-PEADNLKYIAGDMFR-FIPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~------a-~~~~ri~~~~gD~f~-~~p~-~D~~~l 238 (239)
..++|||||||+|.++..+++..|. +++++|..+ .+.. . ....+|+++.+|+.+ +.+. +|+|+.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEE
Confidence 3579999999999999999999876 599999744 2221 1 124579999999855 4444 999975
No 83
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.94 E-value=5.4e-05 Score=62.35 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=53.5
Q ss_pred CCcEEEecCcchHHHHHHHHHCCC------CeEEEeeh-HHHHhcCCC---------CCCeEEEEccCCC-CCCC--ceE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPG------IKCTVLDL-PHAVANLPE---------ADNLKYIAGDMFR-FIPP--ADA 235 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~------l~~~~~Dl-p~vi~~a~~---------~~ri~~~~gD~f~-~~p~--~D~ 235 (239)
..++|||+||+|-.+-.++++-++ .++++.|. |+.+..+.. ..|+.++++|.=+ |+|. +|+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 479999999999999999999888 78999999 777776542 4569999999944 6664 899
Q ss_pred EEe
Q 046950 236 FLF 238 (239)
Q Consensus 236 ~~l 238 (239)
|++
T Consensus 181 yTi 183 (296)
T KOG1540|consen 181 YTI 183 (296)
T ss_pred EEE
Confidence 987
No 84
>PHA03412 putative methyltransferase; Provisional
Probab=97.91 E-value=2.6e-05 Score=64.08 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCcEEEecCcchHHHHHHHHHC---CCCeEEEeeh-HHHHhcCCC-CCCeEEEEccCCC-CCCC-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAF---PGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMFR-FIPP-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~p~-~D~~~l 238 (239)
..+|||+|||+|.++..++++. +..+++++|+ |.+++.++. ..++.++.+|++. +.+. +|+|+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIs 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAIS 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEE
Confidence 5699999999999999999975 4678999999 556666654 4568999999986 3343 999874
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=97.88 E-value=3.5e-05 Score=63.25 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=50.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCCCC--CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRFIP--PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~~p--~~D~~~l 238 (239)
.....+|||+|||+|.++..+++. +..+++++|+ |..++.++. ..+++++.+|+++..+ .+|+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEE
Confidence 344579999999999999998876 4458999999 455654432 2358899999987655 3999885
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=97.88 E-value=4.2e-05 Score=60.54 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=51.1
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCC-eEEEEccCCCCCCC--ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADN-LKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~r-i~~~~gD~f~~~p~--~D~~~l 238 (239)
.+.+++||+|||+|.++..+++. ..+++.+|+ |.+++.+++ .++ ++++.+|++++++. +|++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEE
Confidence 45678999999999999999998 678999999 567666532 233 89999999887664 899874
No 87
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.87 E-value=3.4e-05 Score=61.90 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=48.3
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCC---CCC-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFR---FIP-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~---~~p-~-~D~~~l 238 (239)
+...+|||||||+|.++..+++. ...+++.+|. ++.++.++ ..+++++.+|+.+ +.+ . +|+|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~-~~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACV-ARGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHH-HcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 44579999999999999888765 4567889998 55666554 3468899999865 243 2 899986
No 88
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.87 E-value=4.3e-05 Score=65.19 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=49.1
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCC-CCC-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRF-IPP-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~-~p~-~D~~~l 238 (239)
....+|||||||+|..+..+++. ..+++++|. +.+++.+++ .-++++..+|+.+. ++. +|+|+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEE
Confidence 34569999999999999999885 578999999 556665442 23688889998663 444 999874
No 89
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.87 E-value=6.8e-05 Score=60.96 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=49.5
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC---CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP---PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p---~~D~~~l 238 (239)
..+..+|||||||+|..+..+++... +++.+|. |+.++.+++ ..+++++.+|.++..+ .+|+|++
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~ 150 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILV 150 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEE
Confidence 45668999999999999988877753 7888888 556555542 3459999999987543 3999885
No 90
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.86 E-value=3.9e-05 Score=64.80 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=52.4
Q ss_pred hcCCCcEEEecCcchHHHHHHHHH-CCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCCC--ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIPP--ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p~--~D~~~l 238 (239)
+....+|||||||+|..+..+++. .|..+++++|+ |..++.+++ .+++++..+|+.+ +++. +|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 455779999999999998877776 46778999999 667776653 3589999999866 4543 899874
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.85 E-value=4.8e-05 Score=61.26 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=52.4
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC---CC-CCceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR---FI-PPADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~---~~-p~~D~~~l 238 (239)
.....+|+|+|||+|.++..+++.. |..+++.+|. |..++.+++ .++++++.+|+.+ .. +.+|++++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4456799999999999999998864 6789999999 667665542 4679999999865 23 23899885
No 92
>PRK03612 spermidine synthase; Provisional
Probab=97.82 E-value=3.1e-05 Score=71.44 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=53.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCC-CeEEEeeh-HHHHhcCCC-------------CCCeEEEEccCCC---CCCC-c
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMFR---FIPP-A 233 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~vi~~a~~-------------~~ri~~~~gD~f~---~~p~-~ 233 (239)
+++++|+|||||+|..+.++++ +|. .+++++|+ |++++.+++ .+|++++.+|.++ ..+. +
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 5678999999999999999997 566 79999999 778887653 3689999999876 2344 9
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|+|++
T Consensus 375 DvIi~ 379 (521)
T PRK03612 375 DVIIV 379 (521)
T ss_pred CEEEE
Confidence 99985
No 93
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.81 E-value=2.7e-05 Score=67.35 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCC-C-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIP-P-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p-~-~D~~~l 238 (239)
..+|||||||+|.++..+++ +..+++++|. +..++.++. ..+|+++.+|+-+ +.+ . ||++++
T Consensus 132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence 45899999999999998876 4789999999 566666542 2479999999744 333 3 999985
No 94
>PRK04148 hypothetical protein; Provisional
Probab=97.81 E-value=5.9e-05 Score=56.67 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=47.4
Q ss_pred CCCcEEEecCcchH-HHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCCCCCC----ceEEE
Q 046950 174 GLGSLVDVGGGNGT-FSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFRFIPP----ADAFL 237 (239)
Q Consensus 174 ~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~~~p~----~D~~~ 237 (239)
...+++|||+|.|. .+..|.+. +..+++.|. |..++.++ ...++++.+|+|+|-+. +|+|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~-~~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK-KLGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH-HhCCeEEECcCCCCCHHHHhcCCEEE
Confidence 34789999999996 77777754 678999999 66777665 34579999999997553 78775
No 95
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=8.3e-05 Score=61.87 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=49.5
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCC-------CCCCeEEE----EccCCCCCC---C-ceE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLP-------EADNLKYI----AGDMFRFIP---P-ADA 235 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~-------~~~ri~~~----~gD~f~~~p---~-~D~ 235 (239)
+.....++|+|||+|..+..+++..|+.+++..|... ++..|. ..+||..+ ..|.+.+.| + .|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 3445689999999999999999999999999999954 333332 27888887 556666544 2 676
Q ss_pred EE
Q 046950 236 FL 237 (239)
Q Consensus 236 ~~ 237 (239)
++
T Consensus 226 lv 227 (328)
T KOG2904|consen 226 LV 227 (328)
T ss_pred Ee
Confidence 64
No 96
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.80 E-value=7.8e-05 Score=64.52 Aligned_cols=67 Identities=16% Similarity=0.344 Sum_probs=51.9
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCC-CeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC---CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP---PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p---~~D~~~l 238 (239)
..+..+|||||||+|.++..+++..+. -+++.+|. |+.++.+++ .++++++.+|..+..+ .+|+|++
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEE
Confidence 445679999999999999999998874 46899998 556655442 4579999999876433 3899886
No 97
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.80 E-value=0.00012 Score=59.47 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=48.8
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHHHHhcCCCCCCeEEEEccCCCC---------CC-C-ceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMFRF---------IP-P-ADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~---------~p-~-~D~~~ 237 (239)
+.+..+|||||||+|.++..+++.. |..+++.+|+.++. ...+++++.+|+.++ .+ . +|+|+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~ 122 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVM 122 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence 4566799999999999999999987 55799999996632 234589999999873 33 2 88887
No 98
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.78 E-value=6.1e-05 Score=63.02 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=50.9
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----CCCeEEEEccCCC-CCCCce
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMFR-FIPPAD 234 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~p~~D 234 (239)
..++ +..+ ..+..+|+|||||.|.++..++++.+. ++++|. +..++.++. .++++++.+|+.+ +.+.+|
T Consensus 19 ~~i~-~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 19 QKIV-EAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHH-HhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 3455 5554 456789999999999999999999875 888888 445544432 4689999999987 444455
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.75 E-value=7e-05 Score=60.85 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=54.9
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIPP 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p~ 232 (239)
..++ +.++ +.+..+|||||+|+|.++..+++.. |.-+++.+|. |..++.|+. ..+|+++.+|-....|.
T Consensus 62 a~~l-~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 62 ARML-EALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHH-HHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHH-HHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 3455 6665 6677899999999999999999875 4556888887 667776653 55899999998886553
Q ss_pred ---ceEEEe
Q 046950 233 ---ADAFLF 238 (239)
Q Consensus 233 ---~D~~~l 238 (239)
||.|+.
T Consensus 139 ~apfD~I~v 147 (209)
T PF01135_consen 139 EAPFDRIIV 147 (209)
T ss_dssp G-SEEEEEE
T ss_pred CCCcCEEEE
Confidence 899985
No 100
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=97.74 E-value=3.2e-05 Score=48.03 Aligned_cols=26 Identities=65% Similarity=1.113 Sum_probs=22.9
Q ss_pred HHHHHHHHhChhhHhhhCC-CCCCHHH
Q 046950 30 MSLKCAIELGIADIIHSHG-RAITLSE 55 (239)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~-~~~t~~e 55 (239)
++|++|++|||||.|+.+| +|+|++|
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~e 27 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSE 27 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHH
Confidence 5899999999999999886 7999998
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.73 E-value=8.4e-05 Score=51.72 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=48.2
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCC------CCCCeEEEEccCCCCC---CC-ceEEEe
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLP------EADNLKYIAGDMFRFI---PP-ADAFLF 238 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~------~~~ri~~~~gD~f~~~---p~-~D~~~l 238 (239)
+++|||||.|..+..+++ .+..+++++|+. ..+..++ ...++++..+|+.+.. +. +|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEE
Confidence 589999999999999998 788899999984 4444333 2567999999998853 23 899875
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.73 E-value=0.00011 Score=59.95 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=48.4
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC------------------CCCCeEEEEccCCCCC---
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMFRFI--- 230 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~------------------~~~ri~~~~gD~f~~~--- 230 (239)
....++||+|||.|..+..|+++ ..+++.+|+ |..++.+. ...+|+++.+|+|+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 34579999999999999999985 788999999 45566431 1347999999999832
Q ss_pred -CCceEEE
Q 046950 231 -PPADAFL 237 (239)
Q Consensus 231 -p~~D~~~ 237 (239)
+.+|.|+
T Consensus 111 ~~~fD~i~ 118 (213)
T TIGR03840 111 LGPVDAVY 118 (213)
T ss_pred CCCcCEEE
Confidence 2377765
No 103
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.73 E-value=0.00011 Score=62.72 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=46.7
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCC-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
....+|+|||||+|.++..+++. +..+++.+|+ |..++.+++ .+++.+..+|.....+. +|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEE
Confidence 34589999999999999888764 4568999999 455665542 45677777764333333 899875
No 104
>PRK04266 fibrillarin; Provisional
Probab=97.73 E-value=0.00011 Score=60.38 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=51.9
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHh----cCCCCCCeEEEEccCCCC-----CCC-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVA----NLPEADNLKYIAGDMFRF-----IPP-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~----~a~~~~ri~~~~gD~f~~-----~p~-~D~~~l 238 (239)
..+..+|+|+|||+|.++..+++..+.-+++.+|. |+.++ .++...+|.++.+|...+ ++. +|+++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence 45667999999999999999999998778999999 54444 444456799999998653 233 898863
No 105
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.72 E-value=0.00015 Score=60.05 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=53.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCC---------CCc
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFI---------PPA 233 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~---------p~~ 233 (239)
..++++|||||+|+|.-+..+++..| +.+++.+|. |+.++.|++ .++|+++.||..+-+ +.+
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45688999999999999999998875 779999999 455555542 578999999997621 239
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|++++
T Consensus 146 D~Vfi 150 (234)
T PLN02781 146 DFAFV 150 (234)
T ss_pred CEEEE
Confidence 99875
No 106
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.72 E-value=0.0001 Score=65.36 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=49.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC---CCCeEEEEccCCCCCCCceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMFRFIPPADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~---~~ri~~~~gD~f~~~p~~D~~~ 237 (239)
..+..+|||||||.|.++..+++.+ +.+++++|+ |+.++.+++ ...+++...|+.+.-..+|+|+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 4566799999999999999998876 679999999 667666553 2358888888754322389886
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.71 E-value=0.00011 Score=67.01 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----CCCeEEEEccCCC---CCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMFR---FIPP 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----~~ri~~~~gD~f~---~~p~ 232 (239)
+.++ +.++ ..+..+|||||||+|.++..+++.+. +++++|. |..++.+.. .++++++.+|+.+ +.|.
T Consensus 27 ~~il-~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEIL-SLLP--PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHH-hhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 4455 5554 33456999999999999999999854 7899998 556655432 4579999999864 3443
Q ss_pred --ceEEEe
Q 046950 233 --ADAFLF 238 (239)
Q Consensus 233 --~D~~~l 238 (239)
+|+|+.
T Consensus 102 ~~fD~I~~ 109 (475)
T PLN02336 102 GSVDLIFS 109 (475)
T ss_pred CCEEEEeh
Confidence 899875
No 108
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.69 E-value=0.00011 Score=62.96 Aligned_cols=72 Identities=22% Similarity=0.440 Sum_probs=52.6
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIP 231 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p 231 (239)
..++ +..+ .....+|+|||||.|.+...+++.. .+++++|+ +..++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~Iv-~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 26 DKIV-EKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHH-HhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3445 4444 4456799999999999999999875 46899999 445554432 4689999999987 455
Q ss_pred CceEEE
Q 046950 232 PADAFL 237 (239)
Q Consensus 232 ~~D~~~ 237 (239)
.+|+++
T Consensus 101 ~~d~Vv 106 (294)
T PTZ00338 101 YFDVCV 106 (294)
T ss_pred ccCEEE
Confidence 577665
No 109
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.67 E-value=7.3e-05 Score=63.37 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=57.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----------CCCeEEEEccCCC---CCCC-ceEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMFR---FIPP-ADAF 236 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~p~-~D~~ 236 (239)
.+.+++||=||||.|..++++++..|--+++++|+ |.|++.+++ .+|++.+-+|-++ .-+. +|+|
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 45567999999999999999999999889999999 778887763 4899999999776 4454 9999
Q ss_pred Ee
Q 046950 237 LF 238 (239)
Q Consensus 237 ~l 238 (239)
++
T Consensus 154 i~ 155 (282)
T COG0421 154 IV 155 (282)
T ss_pred EE
Confidence 86
No 110
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.65 E-value=0.00017 Score=57.48 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=49.4
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHHHHhcCCCCCCeEEEEccCCCC---------CC--CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMFRF---------IP--PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~---------~p--~~D~~~l 238 (239)
..+..+|||||||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 4567899999999999999999887 67789999996643 235688999998762 23 2898874
No 111
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.65 E-value=0.00021 Score=61.59 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=46.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcC-------CCCCCeEEEEccCCC-CCC-CceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANL-------PEADNLKYIAGDMFR-FIP-PADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a-------~~~~ri~~~~gD~f~-~~p-~~D~~~l 238 (239)
..++|+|||||+|.++..+++..+. +++++|..+ .+..+ ....++.+..+++-+ +.+ .||+|+.
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s 194 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS 194 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence 3579999999999999999988775 789999844 33221 224678888888733 222 3899874
No 112
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.65 E-value=0.00016 Score=57.85 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=49.9
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCC-----CCCCeEEEEccCCC-CCCC-
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLP-----EADNLKYIAGDMFR-FIPP- 232 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~-----~~~ri~~~~gD~f~-~~p~- 232 (239)
+.++ +..+ .....++||+|||.|..+.-|+++ ...++.+|..+ .++.+. +.-.|+....|+.+ ++|.
T Consensus 20 s~v~-~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~ 94 (192)
T PF03848_consen 20 SEVL-EAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEE 94 (192)
T ss_dssp HHHH-HHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTT
T ss_pred HHHH-HHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCC
Confidence 3455 6665 445789999999999999999998 78899999944 444433 12348999999977 4555
Q ss_pred ceEEE
Q 046950 233 ADAFL 237 (239)
Q Consensus 233 ~D~~~ 237 (239)
+|+|+
T Consensus 95 yD~I~ 99 (192)
T PF03848_consen 95 YDFIV 99 (192)
T ss_dssp EEEEE
T ss_pred cCEEE
Confidence 99986
No 113
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.64 E-value=8.4e-05 Score=59.80 Aligned_cols=53 Identities=21% Similarity=0.422 Sum_probs=42.3
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC------CCCCeEEEEccCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP------EADNLKYIAGDMFR 228 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~------~~~ri~~~~gD~f~ 228 (239)
..+||||||.|.++..+++.+|+..++++|. ...+..+. ..+++.++.+|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 3899999999999999999999999999999 33443332 26789999999766
No 114
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.64 E-value=6.7e-05 Score=67.90 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=50.0
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCC-----C-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFI-----P-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~-----p-~-~D~~~l 238 (239)
.+..+|+|+|||+|.++..+++.. .+++.+|. ++.++.|+. .++++++.+|+.+.. + . +|++++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 345799999999999999999886 58999999 557766553 356999999986532 2 2 899886
No 115
>PLN02823 spermine synthase
Probab=97.62 E-value=9.5e-05 Score=64.33 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=54.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----------CCCeEEEEccCCC---CCCC-ceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMFR---FIPP-ADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~p~-~D~~~ 237 (239)
+.+++||.||||.|..+.++++..+..+++++|+ |.|++.+++ .+|++++.+|.++ ..+. +|+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4678999999999999999999777778999999 778887653 4799999999776 2333 99998
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
+
T Consensus 182 ~ 182 (336)
T PLN02823 182 G 182 (336)
T ss_pred e
Confidence 6
No 116
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.62 E-value=0.00012 Score=62.44 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC----CCCeEEEEccCCC--C-C
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE----ADNLKYIAGDMFR--F-I 230 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~----~~ri~~~~gD~f~--~-~ 230 (239)
...++ +.+. ..+..++||.+||.|..+..+++..| +.+++.+|. |++++.+++ .+|++++.+||-+ . +
T Consensus 8 l~Evl-~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVV-DALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHH-HhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 34556 5554 34456999999999999999999996 789999999 777777653 3689999999875 1 2
Q ss_pred ----CCceEEEe
Q 046950 231 ----PPADAFLF 238 (239)
Q Consensus 231 ----p~~D~~~l 238 (239)
+.+|.|++
T Consensus 85 ~~~~~~vDgIl~ 96 (296)
T PRK00050 85 AEGLGKVDGILL 96 (296)
T ss_pred HcCCCccCEEEE
Confidence 14788775
No 117
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.61 E-value=9.7e-05 Score=62.47 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=51.7
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----------CCCeEEEEccCCC---CCCC-ceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMFR---FIPP-ADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~p~-~D~~~ 237 (239)
+++++||+||||.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|.++ ..+. +|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766778999999 556665542 4689999999766 2233 99987
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
.
T Consensus 151 ~ 151 (270)
T TIGR00417 151 V 151 (270)
T ss_pred E
Confidence 5
No 118
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00016 Score=57.15 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=49.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCCCCCceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRFIPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~~p~~D~~~l 238 (239)
..++|+|+|||+|.+++..+-.-|. +++.+|+ |+.++.++. ..+|+|+..|.-+--..+|.++|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE
Confidence 3578999999999999998887654 7899999 777776653 56899999998443333666665
No 119
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.59 E-value=0.00019 Score=59.98 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=41.3
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCCCceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIPPADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p~~D~~~ 237 (239)
....+|+|||||+|..++.+++..+. +++++|. |..++.+++ .+++.+..+|. .+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEE
Confidence 45789999999999999887775543 7999999 556666543 24455444432 467765
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.58 E-value=0.00013 Score=62.94 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----------CCCeEEEEccCCCCCCC-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++..+|+.+ ++. +|+|++
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEE
Confidence 569999999999999999986 578999999 456665542 1357889999743 344 898874
No 121
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.58 E-value=0.00015 Score=61.87 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=42.6
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCCC-C-ceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFIP-P-ADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~p-~-~D~~~ 237 (239)
.+.++|+|||||+|.++++.++.-. -+++.+|. |..++.+++ .+++.+. ...+.+ . ||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEE
Confidence 4567999999999999999998643 37999999 556666553 5567553 223333 3 89986
No 122
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.58 E-value=0.00015 Score=58.42 Aligned_cols=64 Identities=16% Similarity=0.286 Sum_probs=48.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC----CceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP----PADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p----~~D~~~l 238 (239)
...+|||+|||+|.++.+++.+.. .+++.+|. |++++.++. .++++++.+|+++.++ .+|+|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence 356899999999999997666554 58999998 556554442 3579999999877332 2899986
No 123
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00013 Score=62.01 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=36.9
Q ss_pred HhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC
Q 046950 166 SECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE 215 (239)
Q Consensus 166 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~ 215 (239)
+.++....+..+++|||||+|.++++.++.- -.+++.+|+ |.+++.+++
T Consensus 154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred HHHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHH
Confidence 4444334578999999999999999998863 346999999 556666653
No 124
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.56 E-value=0.00016 Score=62.08 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=45.2
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeehH-HHHhcCCC-------CCCeEEEEccCCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDLP-HAVANLPE-------ADNLKYIAGDMFRF 229 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~ 229 (239)
....+|||+|||+|..+..|+++.+ ..+++.+|+. ++++.+.+ .-+|+++.+||.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 3457899999999999999999998 6899999994 45555432 23577899999873
No 125
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.54 E-value=0.00021 Score=61.73 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=49.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC---CC-CceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF---IP-PADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~---~p-~~D~~~l 238 (239)
...+|||+|||+|.++..+++. ..+++.+|. |+.++.+++ .++++++.+|+.+- .. .+|++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 3579999999999999999984 468999999 667766542 35799999998652 22 3899875
No 126
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.47 E-value=0.00026 Score=61.16 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=48.7
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC--------CCCeEEEE----ccCCCCC--C--CceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIA----GDMFRFI--P--PADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--------~~ri~~~~----gD~f~~~--p--~~D~~~ 237 (239)
..++||||||+|.....++.+.|+++++..|+ |..++.|+. .+||++.. .++|..+ + .+|+++
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 57999999999999888999999999999999 556665542 45787754 4566543 3 289887
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
.
T Consensus 195 c 195 (321)
T PRK11727 195 C 195 (321)
T ss_pred e
Confidence 4
No 127
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.46 E-value=0.00029 Score=57.70 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=48.6
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC------------------CCCCeEEEEccCCCCC---
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMFRFI--- 230 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~------------------~~~ri~~~~gD~f~~~--- 230 (239)
....+|||+|||.|..+..|+++ ..+++.+|+ |..++.+. ...+|++..+|+|+..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999984 788999999 44555431 1467999999999842
Q ss_pred -CCceEEE
Q 046950 231 -PPADAFL 237 (239)
Q Consensus 231 -p~~D~~~ 237 (239)
+.+|.|+
T Consensus 114 ~~~fd~v~ 121 (218)
T PRK13255 114 LADVDAVY 121 (218)
T ss_pred CCCeeEEE
Confidence 3378776
No 128
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.44 E-value=0.00048 Score=52.78 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=31.7
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhc
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVAN 212 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~ 212 (239)
.....+|||||||.|.++..+.+..+ +++++|. |..++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence 45678999999999999999966644 9999999 455554
No 129
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.39 E-value=0.00041 Score=62.86 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=52.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC---CCC-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF---IPP-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~---~p~-~D~~~l 238 (239)
..+..+|+|+|||+|..+..+++.. |..+++.+|+ +..++.+++ .+.|+++.+|+.+. ++. +|+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence 3456799999999999999999986 7789999999 556655432 24599999998763 344 899975
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00095 Score=53.82 Aligned_cols=72 Identities=11% Similarity=0.198 Sum_probs=55.7
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCCC--
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIPP-- 232 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p~-- 232 (239)
.++ +.+. .+...+||+||||+|..+..|++.-- +++.+|+ ++.++.|+. ..+|.+..||=..-+|.
T Consensus 63 ~m~-~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 63 RML-QLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHH-HHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 344 5555 66788999999999999999988755 7888888 555555543 44699999999887663
Q ss_pred -ceEEEe
Q 046950 233 -ADAFLF 238 (239)
Q Consensus 233 -~D~~~l 238 (239)
||.|+.
T Consensus 138 PyD~I~V 144 (209)
T COG2518 138 PYDRIIV 144 (209)
T ss_pred CcCEEEE
Confidence 899975
No 131
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.36 E-value=0.00049 Score=62.02 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=51.7
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCC---C-CC-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRF---I-PP-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~---~-p~-~D~~~l 238 (239)
....+|+|+|||+|..+..+++..++.+++.+|. |+.++.++. .-+++++.+|..+. . +. +|.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence 4567999999999999999999998889999999 556665542 22478999999763 2 23 899874
No 132
>PTZ00146 fibrillarin; Provisional
Probab=97.36 E-value=0.00065 Score=57.73 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=55.8
Q ss_pred HHHHHHhhhhh-hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHH-----HHhcCCCCCCeEEEEccCCCCC---
Q 046950 161 TFVVKSECKQI-FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPH-----AVANLPEADNLKYIAGDMFRFI--- 230 (239)
Q Consensus 161 ~~~l~~~~~~~-~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~-----vi~~a~~~~ri~~~~gD~f~~~--- 230 (239)
..++ ..++.. +....+|||+|||+|.++..+++.. |.=+++.+|..+ .++.+....+|.++.+|...+.
T Consensus 119 a~i~-~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 119 AAII-GGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR 197 (293)
T ss_pred HHHH-CCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh
Confidence 3454 444311 4556799999999999999999986 455899999853 4555555578999999986642
Q ss_pred ---CCceEEEe
Q 046950 231 ---PPADAFLF 238 (239)
Q Consensus 231 ---p~~D~~~l 238 (239)
+.+|+|++
T Consensus 198 ~~~~~vDvV~~ 208 (293)
T PTZ00146 198 MLVPMVDVIFA 208 (293)
T ss_pred cccCCCCEEEE
Confidence 23899975
No 133
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.33 E-value=0.00038 Score=57.01 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLP 214 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~ 214 (239)
+..+ +.++..+-.+..+|||||.+|.+...+++.+-..+++++|+.+ -|..|+
T Consensus 46 D~rL-k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ar 99 (288)
T KOG2899|consen 46 DPRL-KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRAR 99 (288)
T ss_pred Chhh-hhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHH
Confidence 4556 6665445567899999999999999999999999999999954 455444
No 134
>PRK00536 speE spermidine synthase; Provisional
Probab=97.32 E-value=0.00041 Score=58.18 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=50.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----------CCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
.+.+++||=||||.|..+++++|. |. +++.+|+ +.|++.+++ .+|++++. ++.+.. . +|+|+.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEEE
Confidence 467899999999999999999996 65 9999999 567776653 78999887 344322 3 999985
No 135
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.27 E-value=0.00082 Score=56.02 Aligned_cols=73 Identities=25% Similarity=0.499 Sum_probs=55.9
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC-------CCCCeEEEEccCCC-CC
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMFR-FI 230 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~-~~ 230 (239)
...++ +.-+ ......||+||.|+|.+...|+++ .-+++.+++ |..+++.. .+...+++.||++. +.
T Consensus 47 ~~~I~-~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 47 IDQIV-EKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHH-hccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 34455 5544 566789999999999999999998 456888888 55555433 15789999999998 78
Q ss_pred CCceEEE
Q 046950 231 PPADAFL 237 (239)
Q Consensus 231 p~~D~~~ 237 (239)
|-+|+++
T Consensus 122 P~fd~cV 128 (315)
T KOG0820|consen 122 PRFDGCV 128 (315)
T ss_pred cccceee
Confidence 8888765
No 136
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.27 E-value=0.00062 Score=55.18 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=52.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCC-------C-C-Cc
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRF-------I-P-PA 233 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~-------~-p-~~ 233 (239)
..++++||+||++.|.-+..+++..| +.+++.+|. |+..+.|++ .+||+++.||..+- - + .|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45789999999999999999999987 589999999 445554442 67999999998752 1 2 39
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|+|++
T Consensus 123 D~VFi 127 (205)
T PF01596_consen 123 DFVFI 127 (205)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99986
No 137
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.25 E-value=0.00022 Score=59.10 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=47.9
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC--------C----CCeEEEEccCCCCCCCceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE--------A----DNLKYIAGDMFRFIPPADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--------~----~ri~~~~gD~f~~~p~~D~~~l 238 (239)
.+|||||||.|.++.-|++.- ..+++.|. +..|+.|++ . -|+++.+.|.-...+.||+++.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence 679999999999999999985 67899999 557776653 2 2588888887555555998874
No 138
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.25 E-value=0.00044 Score=56.63 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=48.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCC------------------CCCCeEEEEccCCCCCC-
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLP------------------EADNLKYIAGDMFRFIP- 231 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~------------------~~~ri~~~~gD~f~~~p- 231 (239)
.....+|++.|||.|+.+..|+++ ..+++++|+. .+|+.+. ..++|++..||||+--+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 345679999999999999999997 6799999994 4565531 14679999999999222
Q ss_pred ---CceEEE
Q 046950 232 ---PADAFL 237 (239)
Q Consensus 232 ---~~D~~~ 237 (239)
.+|+|+
T Consensus 113 ~~g~fD~iy 121 (218)
T PF05724_consen 113 DVGKFDLIY 121 (218)
T ss_dssp CHHSEEEEE
T ss_pred hcCCceEEE
Confidence 388886
No 139
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00047 Score=56.68 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=42.3
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcC-C---C--CCCeEEEEccCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANL-P---E--ADNLKYIAGDMFR 228 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a-~---~--~~ri~~~~gD~f~ 228 (239)
..+|+||||.|.++..+++++|+.-+++++. .+++..+ . + .++|.++++|.-+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~ 109 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE 109 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 5899999999999999999999999999999 3333332 2 1 3378999998654
No 140
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.17 E-value=0.0014 Score=59.27 Aligned_cols=97 Identities=22% Similarity=0.359 Sum_probs=58.4
Q ss_pred ChhhhcccCchHHHHHHHHHhhchhhhHHHHHHHhhhhh--hcCCCcEEEecCcchHHHHHHHHHC----CCCeEEEeeh
Q 046950 133 KFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQI--FEGLGSLVDVGGGNGTFSRIISEAF----PGIKCTVLDL 206 (239)
Q Consensus 133 ~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~~----P~l~~~~~Dl 206 (239)
..||-+.+|+..-+.|.+++.. .+. +..... -.+.+.|+|||+|+|.++...+++. -..++..++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~-D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk 222 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALK-DRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK 222 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHH-HHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHH-hhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 3467777777666666665411 111 211100 0135789999999999987665543 4678899987
Q ss_pred H-HHHhcC------CC-CCCeEEEEccCCC-CCCC-ceEEE
Q 046950 207 P-HAVANL------PE-ADNLKYIAGDMFR-FIPP-ADAFL 237 (239)
Q Consensus 207 p-~vi~~a------~~-~~ri~~~~gD~f~-~~p~-~D~~~ 237 (239)
. .++... .. .++|+++.+|+-+ ..|. +|+|+
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 3 222111 11 6899999999987 6776 99986
No 141
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.16 E-value=0.0012 Score=56.64 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=49.0
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC-------CCCeEEEEccCCC-CCCC-ceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMFR-FIPP-ADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~p~-~D~~~ 237 (239)
.+.|||||||+|.++.-.+++ -.-++..++-.++.+.|+. .+||++++|-+=+ ++|+ +|+++
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviI 248 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVII 248 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEE
Confidence 578999999999887655544 3346888888877776663 8999999999966 7898 99986
No 142
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.14 E-value=0.00043 Score=57.73 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=52.7
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC----------CCCeEEEEccCCC---CCC--CceE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMFR---FIP--PADA 235 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~p--~~D~ 235 (239)
.+.+++||=||||.|..+.++++..|..+++++|+ |.|++.++. .+|++++.+|-+. ..+ .+|+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 35689999999999999999998776778999999 678787653 5799999999755 333 4999
Q ss_pred EEe
Q 046950 236 FLF 238 (239)
Q Consensus 236 ~~l 238 (239)
|++
T Consensus 154 Ii~ 156 (246)
T PF01564_consen 154 IIV 156 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 143
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.13 E-value=0.00035 Score=57.27 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC---CCCeE--EEEccCCC---CCCCceEEE
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLK--YIAGDMFR---FIPPADAFL 237 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~---~~ri~--~~~gD~f~---~~p~~D~~~ 237 (239)
...+|||||||.|.++..+++.- .+++..|+ ++.|+.|+. .+.+. +.+....+ ....||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEE
Confidence 35699999999999999999985 88999999 457777663 33333 44444333 222488886
No 144
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.11 E-value=0.00051 Score=61.93 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=50.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC---C---C-CceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF---I---P-PADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~---~---p-~~D~~~ 237 (239)
..+..+|+|+|||+|.++..+++.. -+++.+|. ++.++.++. .++++++.+|+.+. + . .+|+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3455799999999999999999875 37899999 667776653 45799999998542 1 1 279888
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
+
T Consensus 368 ~ 368 (431)
T TIGR00479 368 L 368 (431)
T ss_pred E
Confidence 6
No 145
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.11 E-value=0.00055 Score=60.60 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=48.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCC----CCceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFI----PPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~----p~~D~~~l 238 (239)
...+|+|+|||+|.++..++.. ..+++.+|. |..++.++. .++++++.+|+.+.. ..+|++++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 3468999999999999999854 468999998 666665542 347999999986522 23898875
No 146
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.08 E-value=0.0018 Score=53.25 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC------------------CCCCeEEEEccCCCCC----
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMFRFI---- 230 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~------------------~~~ri~~~~gD~f~~~---- 230 (239)
...+|++.|||.|..+.-|++. ..+++++|+ |..|+.+. ...+|++..+|||+--
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3579999999999999999986 678999999 44555531 1457999999999832
Q ss_pred --CCceEEE
Q 046950 231 --PPADAFL 237 (239)
Q Consensus 231 --p~~D~~~ 237 (239)
..+|+|+
T Consensus 121 ~~~~fD~Vy 129 (226)
T PRK13256 121 NLPVFDIWY 129 (226)
T ss_pred ccCCcCeee
Confidence 1378765
No 147
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.06 E-value=0.0018 Score=56.39 Aligned_cols=65 Identities=20% Similarity=0.115 Sum_probs=48.5
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCC-C-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIP-P-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p-~-~D~~~l 238 (239)
+.+..+|+|+|||+|.++.+.+. ...+++..|. +.++..++. .+.+.+..+|+.+ +.+ . +|+|++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 45567999999999999988765 3678999999 556664442 2338899999977 443 3 899875
No 148
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.05 E-value=0.0011 Score=54.06 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=46.1
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----C-CCeEEEEccCCC---CCCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----A-DNLKYIAGDMFR---FIPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~-~ri~~~~gD~f~---~~p~-~D~~~l 238 (239)
...+|||||||+|.++..+++..+ ++++.|+ +.+++.++. . .++++...|+.+ +.+. +|++++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 367999999999999999988654 5999999 445555442 2 258888888754 2234 899875
No 149
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.03 E-value=0.00054 Score=55.44 Aligned_cols=63 Identities=27% Similarity=0.473 Sum_probs=47.2
Q ss_pred hcC--CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCe--EEEEccCCCCCC---C-ceEEE
Q 046950 172 FEG--LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPEADNL--KYIAGDMFRFIP---P-ADAFL 237 (239)
Q Consensus 172 ~~~--~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri--~~~~gD~f~~~p---~-~D~~~ 237 (239)
+++ ..-|||||||+|.-+..|... ....+.+|+ |++++.|.+ ..+ .++-+||=+.+| . ||-++
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEE
Confidence 454 789999999999998888764 578999999 788888764 222 367778877554 2 77654
No 150
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.00 E-value=0.0021 Score=52.86 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC-----CCCeEEEEccCCCC---CCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE-----ADNLKYIAGDMFRF---IPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~-----~~ri~~~~gD~f~~---~p~-~D~~~l 238 (239)
+..+|||||||.|.++..+.+. ..++++.|.. ..++.++. ..++++...|+.+- .+. +|+|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEE
Confidence 4678999999999999988886 4679999984 45554432 33577887776542 223 899875
No 151
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.98 E-value=0.00041 Score=53.98 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=43.9
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC-------CCCCeEEEEccCCCC---CC--C-ceEEEeC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMFRF---IP--P-ADAFLFK 239 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~~---~p--~-~D~~~l~ 239 (239)
++|+|+-||.|..++.+++.++. ++.+|+ |.-++.++ ..+||+++.+|+++- +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 37999999999999999999754 888888 44444443 267999999999983 22 2 6999874
No 152
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.94 E-value=0.0018 Score=50.98 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=43.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCC---------CCCCeEEEEccCCCCC------C-CceE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLP---------EADNLKYIAGDMFRFI------P-PADA 235 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~---------~~~ri~~~~gD~f~~~------p-~~D~ 235 (239)
....++||++|||.|..++.+++..+..++++-|.+++++..+ ...++++.+.|+-++. + .+|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4457899999999999999999998888999999988766443 1467899999886632 2 2888
Q ss_pred EEe
Q 046950 236 FLF 238 (239)
Q Consensus 236 ~~l 238 (239)
|+.
T Consensus 123 Ila 125 (173)
T PF10294_consen 123 ILA 125 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.90 E-value=0.0015 Score=56.30 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=51.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC-------CCCeEEEEccCCC-CCC-C-ceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMFR-FIP-P-ADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~p-~-~D~~~ 237 (239)
-..++|+|||||+|.++.-.+++. .-++..+|-.++++.+.+ .+.|+++.|..-+ .+| + .|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEe
Confidence 357899999999999999888887 567999999887776653 6679999888755 566 3 88885
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.90 E-value=0.00087 Score=53.62 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=47.5
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCC---C--C-C-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRF---I--P-P-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~---~--p-~-~D~~~l 238 (239)
..+|||++||+|.++.+++.+... +++.+|. +.+++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 568999999999999999998764 7899998 445544432 45799999998662 1 1 2 688775
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.88 E-value=0.0047 Score=50.89 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH--HHhcCCCCCCeE
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH--AVANLPEADNLK 220 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~--vi~~a~~~~ri~ 220 (239)
..++++|||||+|.++..+++. +--+++.+|..+ .....+...|+.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~ 122 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVK 122 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCee
Confidence 4578999999999999999986 556799999954 333344455544
No 156
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.88 E-value=0.0029 Score=47.73 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=39.5
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR 228 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~ 228 (239)
+++|||||.|.++..+++.+|..+++.+|. |...+.++. ..+++++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 589999999999999999999999999999 555544332 2346666655543
No 157
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.85 E-value=0.0017 Score=52.54 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=45.2
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC---------------CCCCeEEEEcc
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP---------------EADNLKYIAGD 225 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~---------------~~~ri~~~~gD 225 (239)
.++ +.+. +.....++|||+|.|......+..++--+++++++ |...+.+. ...++++..||
T Consensus 33 ~il-~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 33 KIL-DELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHH-HHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHH-HHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 345 5554 55678999999999999998888877666999998 33322221 14579999999
Q ss_pred CCCC------CCCceEEEe
Q 046950 226 MFRF------IPPADAFLF 238 (239)
Q Consensus 226 ~f~~------~p~~D~~~l 238 (239)
|+++ +..+|++++
T Consensus 110 fl~~~~~~~~~s~AdvVf~ 128 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFV 128 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE
T ss_pred ccccHhHhhhhcCCCEEEE
Confidence 9983 234898876
No 158
>PLN02476 O-methyltransferase
Probab=96.84 E-value=0.0014 Score=55.49 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=53.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCC---C-----C-Cc
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRF---I-----P-PA 233 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~---~-----p-~~ 233 (239)
..++++||+||+++|..++.+++..| +-+++.+|. |+..+.|++ .++|+++.||..+- + . .|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45789999999999999999999876 668899999 445555542 67999999998762 1 2 38
Q ss_pred eEEEe
Q 046950 234 DAFLF 238 (239)
Q Consensus 234 D~~~l 238 (239)
|++++
T Consensus 196 D~VFI 200 (278)
T PLN02476 196 DFAFV 200 (278)
T ss_pred CEEEE
Confidence 99886
No 159
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.82 E-value=0.0029 Score=57.34 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=49.8
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
....+|+|+|||+|..+..+++..+ ..+++.+|+ +..++.+++ .++|+++.+|..+..+ . +|+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 3457999999999999998888664 468999999 455554442 3468999999876333 3 899985
No 160
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.80 E-value=0.0012 Score=63.04 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------C-CCeEEEEccCCCC---CCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMFRF---IPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~-~ri~~~~gD~f~~---~p~-~D~~~l 238 (239)
..++|||+|||+|.++..+++. ...+++.+|+ +..++.+++ . ++++++.+|.++. .+. +|+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4679999999999999999985 3446999999 556665552 2 5899999998773 233 999986
No 161
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.80 E-value=0.0033 Score=53.05 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=51.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCC--CeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCC------CCCceEEE
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPG--IKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRF------IPPADAFL 237 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~------~p~~D~~~ 237 (239)
.+.+||||.||+|.+....++.+|. .++.+.|. |..++..++ .+-++|..+|.|+. .|..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5679999999999999999999998 78999999 555665442 44469999999983 34467776
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
.
T Consensus 215 V 215 (311)
T PF12147_consen 215 V 215 (311)
T ss_pred E
Confidence 5
No 162
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.76 E-value=0.0017 Score=57.94 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=48.4
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------C-CCeEEEEccCCCCC------C-CceEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMFRFI------P-PADAF 236 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~-~ri~~~~gD~f~~~------p-~~D~~ 236 (239)
...++|||+|||+|.++...+. .+..+++.+|+ +..++.+++ . ++++++.+|.|+-+ . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3467999999999999887664 34558999999 556655442 2 47999999998732 2 38999
Q ss_pred Ee
Q 046950 237 LF 238 (239)
Q Consensus 237 ~l 238 (239)
++
T Consensus 298 il 299 (396)
T PRK15128 298 VM 299 (396)
T ss_pred EE
Confidence 86
No 163
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.72 E-value=0.0016 Score=57.27 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=41.8
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR 228 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~ 228 (239)
.+|+|++||+|.++..+++... +++.+|. ++.++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999999874 7999998 566666553 3479999999865
No 164
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0018 Score=49.01 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=46.2
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCe-EEEeeh-HHHHhcCCC-----CCCeEEEEccCCCCCCC---ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDL-PHAVANLPE-----ADNLKYIAGDMFRFIPP---ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~~p~---~D~~~l 238 (239)
.+.+.|+|||.|.+. ++-.+|..+ ++++|+ |+.++.+.. .-.+.+...|+.++.+. +|..++
T Consensus 49 gkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred CcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence 578999999999998 555666665 899999 777776642 34578888888886552 776654
No 165
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.68 E-value=0.0059 Score=52.95 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=52.7
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCCCCC--C-ceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIP--P-ADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~~p--~-~D~~~ 237 (239)
+....++||||++.|.+...++++ +.+++.+|.-+..+.....+||+++.+|-|.-.| . +|.++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEE
Confidence 345679999999999999999998 5699999987776666668899999999888544 2 67665
No 166
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.62 E-value=0.0017 Score=57.24 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=41.4
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR 228 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~ 228 (239)
.+++|++||+|.++..+++... +++.+|. +..++.+++ .++++++.+|.++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998864 7999998 556665542 4479999999865
No 167
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.59 E-value=0.0044 Score=55.86 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=49.0
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCCCC----CC-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFRFI----PP-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~----p~-~D~~~l 238 (239)
.....+|+|+|||.|..+..+++..|+.+++.+|. ++.++.+++ ..++.++.+|..... +. +|.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 34567999999999999999999998889999999 555554432 223455778876532 23 899875
No 168
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.57 E-value=0.0061 Score=52.97 Aligned_cols=64 Identities=23% Similarity=0.515 Sum_probs=51.8
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCC-eEEEeeh-HHHHhcCCC-------------CCCeEEEEccCCCCC---C-Cc
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGI-KCTVLDL-PHAVANLPE-------------ADNLKYIAGDMFRFI---P-PA 233 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dl-p~vi~~a~~-------------~~ri~~~~gD~f~~~---p-~~ 233 (239)
.+..+++-+|||.|..+++++| ||+. +++.+|+ |.+|+-++. ..|++.+.-|.|+=+ . .+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999987 7855 7999999 889987762 679999999988722 1 26
Q ss_pred eEEE
Q 046950 234 DAFL 237 (239)
Q Consensus 234 D~~~ 237 (239)
|.++
T Consensus 367 D~vI 370 (508)
T COG4262 367 DVVI 370 (508)
T ss_pred cEEE
Confidence 7665
No 169
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.54 E-value=0.0033 Score=47.74 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=41.3
Q ss_pred cCCCcEEEecCcchHHHHHHHHH----CCCCeEEEeeh-HHHHhcCCC---------CCCeEEEEccCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEA----FPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMFR 228 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~vi~~a~~---------~~ri~~~~gD~f~ 228 (239)
.+..+|||+|||.|.++..|+.. .|+++++.+|. ++.++.+.. ..++++..+++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 56789999999999999999992 38899999998 344444331 3566777666543
No 170
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.012 Score=48.79 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=63.8
Q ss_pred HHHHHhhchhhhH----HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHH-HCCCCeEEEeeh-HHHHhcCCC------
Q 046950 148 FNEAMASDSEIMT----TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISE-AFPGIKCTVLDL-PHAVANLPE------ 215 (239)
Q Consensus 148 f~~~m~~~~~~~~----~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~-~~P~l~~~~~Dl-p~vi~~a~~------ 215 (239)
|...|...++... ..++ .... .....+|+|.|-|+|.++..|+. -.|.-+++.+|. ++-.+.|.+
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~-~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~ 143 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIV-ARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG 143 (256)
T ss_pred HHHhCcCCCceecCCCHHHHH-HHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc
Confidence 3334666666432 3344 4444 66788999999999999999997 668889999999 334444432
Q ss_pred -CCCeEEEEccCCCC-CCC-ceEEEe
Q 046950 216 -ADNLKYIAGDMFRF-IPP-ADAFLF 238 (239)
Q Consensus 216 -~~ri~~~~gD~f~~-~p~-~D~~~l 238 (239)
.++|++..+|+.+. .+. +|+++|
T Consensus 144 l~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 144 LGDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred cccceEEEeccccccccccccCEEEE
Confidence 67899999999884 333 899886
No 171
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.47 E-value=0.012 Score=49.46 Aligned_cols=64 Identities=17% Similarity=0.394 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC----CCCCeEEEEccCCC
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP----EADNLKYIAGDMFR 228 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~----~~~ri~~~~gD~f~ 228 (239)
+..++ +..+ .....+|+|||.|.|.+...|++.. -+++++|. |..++..+ ..++++++.+|+++
T Consensus 19 ~~~Iv-~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 19 ADKIV-DALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHH-HHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred HHHHH-HhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 44556 6655 4567899999999999999999998 67888888 33333332 36899999999987
No 172
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.44 E-value=0.007 Score=54.72 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=49.8
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC-----C-CC-ceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF-----I-PP-ADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~-----~-p~-~D~~~ 237 (239)
....+|+|+|||+|..+..+++..+ ..+++.+|. ++.++.+++ .++|+++.+|..+. . +. +|.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4467999999999999999998864 568999999 555555432 34689999998652 1 23 89988
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
+
T Consensus 331 ~ 331 (434)
T PRK14901 331 L 331 (434)
T ss_pred E
Confidence 5
No 173
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.38 E-value=0.014 Score=49.72 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
..++|+|||||+|.++-.++++.|. .++++|-
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP 146 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDP 146 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECC
Confidence 4679999999999999999998665 4788886
No 174
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.30 E-value=0.005 Score=56.70 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=41.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh--HHHHhcCC-----CCCCeEEEEccC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL--PHAVANLP-----EADNLKYIAGDM 226 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~vi~~a~-----~~~ri~~~~gD~ 226 (239)
+...+||||||.|.++..+++.+|+..++++|. +.+...++ .-.++.++++|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~ 406 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL 406 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 367999999999999999999999999999999 33332222 145677788775
No 175
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0086 Score=48.88 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=54.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC-------CCCeEEEE-ccCCC---C-C-CCceEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIA-GDMFR---F-I-PPADAF 236 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~-gD~f~---~-~-p~~D~~ 236 (239)
..+++++|+||.+.|.-++.++...| +-+.+.+|+ |+-++.|++ .+||+.+. ||..+ . . +++|++
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56899999999999999999999999 889999999 555555542 77899988 57665 3 2 349999
Q ss_pred Ee
Q 046950 237 LF 238 (239)
Q Consensus 237 ~l 238 (239)
++
T Consensus 137 FI 138 (219)
T COG4122 137 FI 138 (219)
T ss_pred EE
Confidence 86
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.026 Score=47.21 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=47.6
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh--HHHHhcC-CCCCCeEEEEccCCC-CCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL--PHAVANL-PEADNLKYIAGDMFR-FIP 231 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--p~vi~~a-~~~~ri~~~~gD~f~-~~p 231 (239)
..++ +..+ .....+|++||+|.|.+...|+++...+.++=.|. -+.+... ...++++.+.||+.+ ++|
T Consensus 20 ~kIv-~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 20 DKIV-EAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHH-HhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 4455 5544 34477999999999999999999977644444443 2222222 236899999999988 566
No 177
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.26 E-value=0.012 Score=49.50 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=48.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-C--CCCceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-F--IPPADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~--~p~~D~~~l 238 (239)
....+|+|+|||.|..+..+++..+ .-+++.+|. +..++.+++ ..+|+++.+|... + .+.+|+|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 3457899999999999999998875 458999999 445544432 3468899998643 2 234899875
No 178
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.25 E-value=0.011 Score=53.47 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=50.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-C--CCC-ceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-F--IPP-ADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~--~p~-~D~~~l 238 (239)
..+..+|+|+|||+|..+..+++.. +..+++.+|+ +..++.+++ .+.|+++.+|... + .+. +|.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3456799999999999999999876 5679999999 445554432 3458899999865 2 233 899875
No 179
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.20 E-value=0.0087 Score=47.66 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=46.2
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH--------HHHhcCCCCCCeEEEEccCCC-CCCC-ceEEEeC
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP--------HAVANLPEADNLKYIAGDMFR-FIPP-ADAFLFK 239 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp--------~vi~~a~~~~ri~~~~gD~f~-~~p~-~D~~~l~ 239 (239)
+++|||.|.|.=++-|+=.+|+++++++|-- .++.... -++++++++..-+ ..+. +|+++.|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~nv~v~~~R~E~~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LSNVEVINGRAEEPEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CCCEEEEEeeecccccCCCccEEEee
Confidence 8999999999999999999999999999982 2333222 4578899888755 2343 8998754
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.04 E-value=0.0091 Score=49.78 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=52.8
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeeh-HHHHhcCC-------CCCCeEEEEccCCCC---C-------CC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDL-PHAVANLP-------EADNLKYIAGDMFRF---I-------PP 232 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~~---~-------p~ 232 (239)
..+++++|+||.+.|.-+..+++..| +.+++.+|. |+..+.|+ -.++|+++.||..+- + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45689999999999999999999875 778999999 44445444 268999999998762 1 24
Q ss_pred ceEEEe
Q 046950 233 ADAFLF 238 (239)
Q Consensus 233 ~D~~~l 238 (239)
+|++++
T Consensus 157 fD~iFi 162 (247)
T PLN02589 157 FDFIFV 162 (247)
T ss_pred ccEEEe
Confidence 899886
No 181
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.00 E-value=0.011 Score=47.79 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=48.2
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC-------CCCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
....+|+|.-||.|.|+..+++..+..+++..|+ |..++-.. ..++|..+.+|..+-.+ . +|-++|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEE
Confidence 4567999999999999999999888889999999 66655433 27889999999877443 3 888877
No 182
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.98 E-value=0.027 Score=48.39 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=57.7
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCC------
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFR------ 228 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~------ 228 (239)
..++ +.+. ......+||.=+|.|..+..++++.|+.+++++|. |.+++.+++ .+|++++.++|-+
T Consensus 10 ~Evl-~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 10 DEVV-EGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHH-HhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 4555 5554 34456899999999999999999998899999999 667776653 4699999999865
Q ss_pred CCC--CceEEEe
Q 046950 229 FIP--PADAFLF 238 (239)
Q Consensus 229 ~~p--~~D~~~l 238 (239)
..+ .+|.|++
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 112 3788775
No 183
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.97 E-value=0.008 Score=43.15 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=26.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
....+||||||+|.+..-|.++ ..+|.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4678999999999999998886 667888887
No 184
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.88 E-value=0.0086 Score=49.19 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=49.5
Q ss_pred CcEEEecCcchHHHHHHHHHCCC--CeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCC-----CC-C-ceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPG--IKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRF-----IP-P-ADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~-----~p-~-~D~~~l 238 (239)
.+|+.||||.|-..--+++.+|+ +++...|. |.+++..++ ..|+.....|+-.+ .+ + .|+++|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 48999999999999999999998 99999999 667776653 56777777777653 22 2 687765
No 185
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.87 E-value=0.012 Score=47.64 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=45.0
Q ss_pred EEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC-------CCCCeEEEEccCCCCCCC---ceEEEe
Q 046950 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMFRFIPP---ADAFLF 238 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~~~p~---~D~~~l 238 (239)
|+||||-+|...+.|++...--+++..|+ |.-++.|+ ..++|++..+|=|+.++. .|++++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence 68999999999999999999999999999 33444433 378999999998887653 677765
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.82 E-value=0.019 Score=46.81 Aligned_cols=64 Identities=22% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh--------HHHHhcCCCCCCeEEEEccCCC--CCCC-ceEEEeC
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL--------PHAVANLPEADNLKYIAGDMFR--FIPP-ADAFLFK 239 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl--------p~vi~~a~~~~ri~~~~gD~f~--~~p~-~D~~~l~ 239 (239)
..+++|||.|.|.=++-++=.+|+++++++|. ..+..... -++++++++-.=+ +.+. +|+++-+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~nv~i~~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LENVEIVHGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CCCeEEehhhHhhcccccccCcEEEee
Confidence 58999999999999999999999999999998 22333222 4557777775522 2334 8887643
No 187
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.58 E-value=0.066 Score=44.62 Aligned_cols=89 Identities=11% Similarity=0.232 Sum_probs=55.4
Q ss_pred HHHHHHhhchhhhHH----HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHH-HCCCCeEEEeehH-HHHhcCC------
Q 046950 147 RFNEAMASDSEIMTT----FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISE-AFPGIKCTVLDLP-HAVANLP------ 214 (239)
Q Consensus 147 ~f~~~m~~~~~~~~~----~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~-~~P~l~~~~~Dlp-~vi~~a~------ 214 (239)
.|...|...++...+ .++ ...+ ..+..+||+-|.|+|.++..|++ -.|.=++.-+|.- +-++.|+
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~-~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYIL-MRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHH-HHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcceeeCchHHHHH-HHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 455666666665433 344 4445 66788999999999999999997 5588899999993 3333333
Q ss_pred -CCCCeEEEEccCCCC-C----CC-ceEEEe
Q 046950 215 -EADNLKYIAGDMFRF-I----PP-ADAFLF 238 (239)
Q Consensus 215 -~~~ri~~~~gD~f~~-~----p~-~D~~~l 238 (239)
..++|++..+|.-++ + .. +|+++|
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCCCceeEecceecccccccccCcccEEEE
Confidence 267899999998542 2 23 899986
No 188
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.55 E-value=0.031 Score=46.35 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=47.0
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCC-----CCCCeEEEEccCCCCCCC--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLP-----EADNLKYIAGDMFRFIPP--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~-----~~~ri~~~~gD~f~~~p~--~D~~~l 238 (239)
.+.+|+|||||---++.-.....|+.+.+..|+.. .++... ...+.+....|.+..+|. +|+.+|
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 47899999999999999999999999999999943 344322 145677888899998774 898765
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.54 E-value=0.016 Score=51.47 Aligned_cols=64 Identities=20% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC---CCCceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF---IPPADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~---~p~~D~~~l 238 (239)
..+|+|++||+|.+++.++++.+..+++..|. |..++.++. .+.+++..+|...- ...+|+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 35899999999999999999888668999999 667665542 34567888887542 223898875
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.44 E-value=0.032 Score=44.21 Aligned_cols=67 Identities=22% Similarity=0.192 Sum_probs=47.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCe---------EEEeeh-HHHHhcCC-------CCCCeEEEEccCCC-CCC-C
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIK---------CTVLDL-PHAVANLP-------EADNLKYIAGDMFR-FIP-P 232 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~---------~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~-~~p-~ 232 (239)
+.+...|+|-=||+|+++++.+...++.. +++.|. +.+++.++ ..+.|.+..+|+++ +.+ .
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45567999999999999999988888877 899999 55665544 25679999999987 533 3
Q ss_pred -ceEEEe
Q 046950 233 -ADAFLF 238 (239)
Q Consensus 233 -~D~~~l 238 (239)
.|+|+.
T Consensus 106 ~~d~Ivt 112 (179)
T PF01170_consen 106 SVDAIVT 112 (179)
T ss_dssp BSCEEEE
T ss_pred CCCEEEE
Confidence 788763
No 191
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.38 E-value=0.03 Score=44.19 Aligned_cols=64 Identities=19% Similarity=0.370 Sum_probs=49.1
Q ss_pred CCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCCCCC-C-ceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFRFIP-P-ADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~~~p-~-~D~~~l 238 (239)
...+++||||+|.....|.+.. |++....-|+ |++++...+ .-++..+..|+++.+- . .|++++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEE
Confidence 6789999999999998888765 8888999999 666665332 4557888889988543 3 787765
No 192
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.38 E-value=0.021 Score=46.97 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=33.0
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE 215 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~ 215 (239)
.++.+.++|||||+|.-++.++..|.+ +|..|. +++++.+.+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKK 73 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhc
Confidence 355679999999999777777777654 888999 567887765
No 193
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.28 E-value=0.073 Score=43.07 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=46.9
Q ss_pred hhhcccCchHHHHHHHHHhhchh-h---hHHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHH
Q 046950 135 WEFMNQNPAINQRFNEAMASDSE-I---MTTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAV 210 (239)
Q Consensus 135 ~e~~~~~~~~~~~f~~~m~~~~~-~---~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi 210 (239)
++.+.++|+.-..|+++-..... | -...++ +.+. ..++...|.|.|||.+..+.++. ...++.-+||-+.
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI-~~l~-~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVII-EWLK-KRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHH-HHHC-TS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S-
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHH-HHHH-hcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC-
Confidence 34566778776666665543322 2 123334 3332 12345689999999999996654 2457889999553
Q ss_pred hcCCCCCCeEEEEccCCC-CCCC--ceEEEeC
Q 046950 211 ANLPEADNLKYIAGDMFR-FIPP--ADAFLFK 239 (239)
Q Consensus 211 ~~a~~~~ri~~~~gD~f~-~~p~--~D~~~l~ 239 (239)
.+ .+++.|+-. |++. .|+++++
T Consensus 105 -----n~--~Vtacdia~vPL~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -----NP--RVTACDIANVPLEDESVDVAVFC 129 (219)
T ss_dssp -----ST--TEEES-TTS-S--TT-EEEEEEE
T ss_pred -----CC--CEEEecCccCcCCCCceeEEEEE
Confidence 22 256788844 5553 7888763
No 194
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=0.07 Score=42.35 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=39.9
Q ss_pred hhcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHHHHhcCCCCCCeEEEEc-cCCC
Q 046950 171 IFEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAG-DMFR 228 (239)
Q Consensus 171 ~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~vi~~a~~~~ri~~~~g-D~f~ 228 (239)
.+.+..+|+|+|+..|.++....++- |+-.+..+|+-++.+ ..+++++.+ |+.+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtd 121 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTD 121 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCC
Confidence 35567899999999999999776665 999999999966543 344555555 5543
No 195
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.84 E-value=0.049 Score=43.90 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=31.2
Q ss_pred hcCCCc-EEEecCcchHHHHHHHHHCCCCeEEEeehHH
Q 046950 172 FEGLGS-LVDVGGGNGTFSRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 172 ~~~~~~-vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 208 (239)
++...+ ||+||+|+|+.+..+++.+|+++..=-|..+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~ 59 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDD 59 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh
Confidence 444554 9999999999999999999999987777743
No 196
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.73 E-value=0.081 Score=45.49 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCeEEEEccCCC
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMFR 228 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~ 228 (239)
..+++ +.+. ..+...+||.=-|.|..+.++++++|+.+++.+|. |.+++.+++ .+|+.++.++|-+
T Consensus 9 l~Evl-~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVL-EALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHH-HHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHH-HhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 34556 5554 45567999999999999999999999999999999 777766653 6899999999865
No 197
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.71 E-value=0.09 Score=50.49 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=53.4
Q ss_pred hHHHHHHHhhhhhh-cCCCcEEEecCcchHHHHHHHHHC-----------------------------------------
Q 046950 159 MTTFVVKSECKQIF-EGLGSLVDVGGGNGTFSRIISEAF----------------------------------------- 196 (239)
Q Consensus 159 ~~~~~l~~~~~~~~-~~~~~vvDVGGG~G~~~~~l~~~~----------------------------------------- 196 (239)
.+..++ .... | .+...++|-.||+|+++++.+...
T Consensus 177 lAaa~l-~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 177 LAAAIL-LRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHH-HHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 344555 4444 3 345799999999999999876631
Q ss_pred -CCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC-CCC----CceEEEe
Q 046950 197 -PGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR-FIP----PADAFLF 238 (239)
Q Consensus 197 -P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~p----~~D~~~l 238 (239)
+..+++++|+ |.+++.|+. .++|++..+|+++ +.| .+|+|+.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt 309 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS 309 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence 1236899998 667776552 5679999999977 222 2788763
No 198
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.096 Score=42.31 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=49.4
Q ss_pred HhhhhhhcCCCcEEEecCcchHHHHHHHHHC--CCCeEEEeeh-HHHHhcCCC----------------CCCeEEEEccC
Q 046950 166 SECKQIFEGLGSLVDVGGGNGTFSRIISEAF--PGIKCTVLDL-PHAVANLPE----------------ADNLKYIAGDM 226 (239)
Q Consensus 166 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~~~Dl-p~vi~~a~~----------------~~ri~~~~gD~ 226 (239)
+.++..+....++||||+|+|.+...+.+.- |....+++|+ |++++.+.+ ..++.++.||-
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 4443335567799999999999988877532 3332367777 777664331 56799999998
Q ss_pred CCCCC---CceEEEe
Q 046950 227 FRFIP---PADAFLF 238 (239)
Q Consensus 227 f~~~p---~~D~~~l 238 (239)
..-.+ .+|.|..
T Consensus 154 r~g~~e~a~YDaIhv 168 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHV 168 (237)
T ss_pred cccCCccCCcceEEE
Confidence 77333 3888753
No 199
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.11 Score=41.87 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=48.8
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHHHHhcCCCCCCeEEEEccCCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMFRF 229 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~ 229 (239)
.++. +.+. .+.+..+|+|+|+..|.++..+.+.- +..+++.+|+-+.-.. .+|.++-+||+.+
T Consensus 34 ~el~-~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~ 97 (205)
T COG0293 34 LELN-EKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDE 97 (205)
T ss_pred HHHH-HhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCc
Confidence 4455 5553 57788999999999999999888766 4567999999765443 3489999999873
No 200
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.60 E-value=0.093 Score=40.93 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=55.1
Q ss_pred hhhHHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HHHHhcC-CCCCCeEEEEccCCC-----
Q 046950 157 EIMTTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PHAVANL-PEADNLKYIAGDMFR----- 228 (239)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~vi~~a-~~~~ri~~~~gD~f~----- 228 (239)
.+.+..+. ...+ ++...-|+++|.|+|.+..+++++- ++-..+..+. |+-+... +.-+.++++.||.|.
T Consensus 34 s~lA~~M~-s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 34 SILARKMA-SVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHHH-hccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 35556666 6777 5566789999999999999988864 6666777777 4444433 235667799999886
Q ss_pred -CCC--CceEEE
Q 046950 229 -FIP--PADAFL 237 (239)
Q Consensus 229 -~~p--~~D~~~ 237 (239)
+.+ .+|.++
T Consensus 111 ~e~~gq~~D~vi 122 (194)
T COG3963 111 GEHKGQFFDSVI 122 (194)
T ss_pred hhcCCCeeeeEE
Confidence 233 388876
No 201
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.46 E-value=0.039 Score=45.18 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhchhhhHHHHHH---HhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCCC
Q 046950 144 INQRFNEAMASDSEIMTTFVVK---SECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLPE 215 (239)
Q Consensus 144 ~~~~f~~~m~~~~~~~~~~~l~---~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~~ 215 (239)
..++|.+.....-....|..+. ...+ ..+.++++|+|||+|..+..|...-- +.+.+|+.+ +++.|.+
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHh
Confidence 3456766655433333343331 2222 22378999999999999988887643 467789965 6676654
No 202
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.16 E-value=0.023 Score=45.54 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
-..++|||||.|.++..|.-.||+--++++++-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR 93 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIR 93 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhh
Confidence 357999999999999999999999988888883
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.85 E-value=0.079 Score=44.92 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCe-EEEeehH-HHHhc
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDLP-HAVAN 212 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dlp-~vi~~ 212 (239)
.+++|||+|+|.|..+-+....+|.+. ++++|.. ..++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL 73 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence 467999999999999999999999664 7899984 34443
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.64 E-value=0.065 Score=42.19 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=36.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHHHHhcCCCCCCeEEEEccCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMF 227 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f 227 (239)
+..++||+|++.|.++..++++. +..+++.+|+...-+ ...+.++.+|++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~ 73 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDIT 73 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccc
Confidence 45899999999999999999988 888999999966511 233444455544
No 205
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.31 E-value=0.36 Score=39.32 Aligned_cols=65 Identities=14% Similarity=0.282 Sum_probs=50.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-H----HHHhcCC---CCCCeEEEEccCCCCCC-C--ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-P----HAVANLP---EADNLKYIAGDMFRFIP-P--ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p----~vi~~a~---~~~ri~~~~gD~f~~~p-~--~D~~~l 238 (239)
....+.||||-++.+.+.|.+.+|..+++..|. | .++.+.+ ..+||+...+|-|.++- . .|+++.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence 344599999999999999999999999999998 2 3333333 38899999999988643 2 677654
No 206
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=93.29 E-value=0.096 Score=48.52 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=44.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCC--------CeEEEeeh-HHHHhcCCC------CCCeEEEEccCCCC-------C-
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPG--------IKCTVLDL-PHAVANLPE------ADNLKYIAGDMFRF-------I- 230 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~--------l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~-------~- 230 (239)
...+|+|.+||+|.++.+++++.+. +.+.++|+ |.+++.+.. ...++...+|++.. .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4568999999999999999988763 45788888 445544431 12456676776542 1
Q ss_pred CCceEEEe
Q 046950 231 PPADAFLF 238 (239)
Q Consensus 231 p~~D~~~l 238 (239)
+.+|+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 23898873
No 207
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=92.65 E-value=0.48 Score=39.64 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=54.4
Q ss_pred hhhhcccCchHHHHHHHHHhhchhhh----HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHH
Q 046950 134 FWEFMNQNPAINQRFNEAMASDSEIM----TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHA 209 (239)
Q Consensus 134 ~~e~~~~~~~~~~~f~~~m~~~~~~~----~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~v 209 (239)
-++.+..+|...+.|+.+......-+ ...++ ..+. .-++...|-|+|||.+.++. --..++.-+||-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii-~~ik-~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a~ 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVII-RKIK-RRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVAV 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHH-HHHH-hCcCceEEEecccchhhhhh-----ccccceeeeeeecC
Confidence 34556678877777777665433211 23344 4333 23456789999999999887 12235788888554
Q ss_pred HhcCCCCCCeEEEEccCCC-CCCC--ceEEEeC
Q 046950 210 VANLPEADNLKYIAGDMFR-FIPP--ADAFLFK 239 (239)
Q Consensus 210 i~~a~~~~ri~~~~gD~f~-~~p~--~D~~~l~ 239 (239)
.+ .+++.|+-. |++- .|+.+++
T Consensus 211 ------~~--~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 211 ------NE--RVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred ------CC--ceeeccccCCcCccCcccEEEee
Confidence 22 246677755 4442 6776653
No 208
>KOG2730 consensus Methylase [General function prediction only]
Probab=92.51 E-value=0.09 Score=42.79 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=42.6
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR 228 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~ 228 (239)
....|||.-||.|.-.+.++.++|. ++.+|+ |.-|..|+. .+||+|++|||++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999999885 677787 434444442 6799999999987
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.30 E-value=0.25 Score=43.84 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=48.1
Q ss_pred CcEEEecCcchHHHHHHHHHCCCC-eEEEeeh-HHHHhcCCC------CCCeEEEEccCCCCC----CCceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGI-KCTVLDL-PHAVANLPE------ADNLKYIAGDMFRFI----PPADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~----p~~D~~~l 238 (239)
-+|||.-+|+|..++..+++.++. +++..|+ |++++.++. .+.+++..+|.+.-+ ..+|+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 489999999999999999987665 5899999 666665542 345788889887622 23888875
No 210
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=92.17 E-value=0.39 Score=41.22 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=44.8
Q ss_pred cCCCcEEEecCcchHHHHHHHHH-------CCCCeEEEeehH-HHHhcCC------C--CCCeEEEEccCCCC--CC---
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEA-------FPGIKCTVLDLP-HAVANLP------E--ADNLKYIAGDMFRF--IP--- 231 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~-------~P~l~~~~~Dlp-~vi~~a~------~--~~ri~~~~gD~f~~--~p--- 231 (239)
....+|+|-.||+|.++.++.+. .+..++.++|.. .++..+. . ........+|.|.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 34568999999999999998874 588899999994 3443332 1 33356889998873 22
Q ss_pred CceEEEe
Q 046950 232 PADAFLF 238 (239)
Q Consensus 232 ~~D~~~l 238 (239)
.+|+|++
T Consensus 125 ~~D~ii~ 131 (311)
T PF02384_consen 125 KFDVIIG 131 (311)
T ss_dssp -EEEEEE
T ss_pred ccccccC
Confidence 3999875
No 211
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.90 E-value=2 Score=36.28 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCCcEEEecCcchH----HHHHHHHHCC-----CCeEEEeeh-HHHHhcCCC----------------------------
Q 046950 174 GLGSLVDVGGGNGT----FSRIISEAFP-----GIKCTVLDL-PHAVANLPE---------------------------- 215 (239)
Q Consensus 174 ~~~~vvDVGGG~G~----~~~~l~~~~P-----~l~~~~~Dl-p~vi~~a~~---------------------------- 215 (239)
+.-+|.-.||++|. +++.+.+..| ..+++.-|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36689999999995 5778888887 467899999 456666551
Q ss_pred -------CCCeEEEEccCCCCC--CC-ceEEEeC
Q 046950 216 -------ADNLKYIAGDMFRFI--PP-ADAFLFK 239 (239)
Q Consensus 216 -------~~ri~~~~gD~f~~~--p~-~D~~~l~ 239 (239)
...|.|..+|.+++. +. +|+|+.+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR 209 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR 209 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEc
Confidence 356999999999954 34 9999875
No 212
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.85 E-value=0.44 Score=40.71 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=53.3
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCe-EEEeeh-HHHHhcCCC-----CCCeEEEEccCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDL-PHAVANLPE-----ADNLKYIAGDMFR 228 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~vi~~a~~-----~~ri~~~~gD~f~ 228 (239)
..++ +.+. .......||.==|.|..+.++++++|... .+.+|. |.+++.+++ .+|++++.++|-.
T Consensus 13 ~E~i-~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVV-ELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHH-Hhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 4455 5555 34558999999999999999999999886 999999 778888874 6799999998754
No 213
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.53 E-value=0.67 Score=37.26 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCCcEEEecCcchHH----HHHHHHH----CC-CCeEEEeeh-HHHHhcCCC----------------------------
Q 046950 174 GLGSLVDVGGGNGTF----SRIISEA----FP-GIKCTVLDL-PHAVANLPE---------------------------- 215 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~----~~~l~~~----~P-~l~~~~~Dl-p~vi~~a~~---------------------------- 215 (239)
+.-+|.-.||++|.= ++.+.+. .+ +++++.-|+ +.+++.|+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456999999999963 3333331 22 467899999 557776551
Q ss_pred ------CCCeEEEEccCCC-CCC-C-ceEEEeC
Q 046950 216 ------ADNLKYIAGDMFR-FIP-P-ADAFLFK 239 (239)
Q Consensus 216 ------~~ri~~~~gD~f~-~~p-~-~D~~~l~ 239 (239)
.++|+|..+|+++ +.+ . +|+|+.+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR 143 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR 143 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence 4789999999999 332 3 9999875
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=91.40 E-value=0.63 Score=37.33 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=44.9
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC---C--CCCeEEEEccCCCCCCCceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP---E--ADNLKYIAGDMFRFIPPADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~---~--~~ri~~~~gD~f~~~p~~D~~~l 238 (239)
+-..++|+|.|.|+|..+++-++.-- ..++.-|. |..+..++ + .-.|.++..|.-.+-|.+|++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEe
Confidence 55678999999999999988877532 23444444 44444333 1 34588888897774445999886
No 215
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.26 E-value=0.84 Score=38.43 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=32.9
Q ss_pred CCCcEEEecCcchHH--HHHH-HHHCCCCeEEEeeh-HHHHhcCCC----CCC--eEEEEccCCCC
Q 046950 174 GLGSLVDVGGGNGTF--SRII-SEAFPGIKCTVLDL-PHAVANLPE----ADN--LKYIAGDMFRF 229 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~--~~~l-~~~~P~l~~~~~Dl-p~vi~~a~~----~~r--i~~~~gD~f~~ 229 (239)
|.+.+||||||-=+. ..++ .+..|+.|++-+|. |-|+.+++. .++ ..++.+|+.+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 789999999996532 3344 45689999999999 668888763 334 89999999874
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.68 E-value=0.57 Score=37.36 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=44.8
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCCCceEEE
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIPPADAFL 237 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p~~D~~~ 237 (239)
.++-|+|.|+|.++.-.+++ .=|++.+++ |-..+-+.+ ..+++.+.||..+ ++..||+++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvi 101 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVI 101 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeH
Confidence 47999999999998777666 447888888 434333332 5689999999987 675588875
No 217
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.15 E-value=0.22 Score=39.62 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=45.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC-------CCCCeEEEEccCCCC------CCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMFRF------IPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~~------~p~-~D~~~l 238 (239)
...++||+=+|+|.++.+.+.+- --+++.+|. +.++..++ ..++++.+.+|.+.. ... +|+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36799999999999999988764 236899998 44444433 256799999997652 133 999987
No 218
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.97 E-value=0.58 Score=42.31 Aligned_cols=65 Identities=28% Similarity=0.370 Sum_probs=48.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC---CCC---CceEEEe
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR---FIP---PADAFLF 238 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~p---~~D~~~l 238 (239)
..+..+|+|.=||.|.++..|+++ --+++.++. |+.++.|+. .++++|+.+|..+ ... .+|++++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 345679999999999999999954 456888888 666666552 4559999998766 222 2788875
No 219
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=89.42 E-value=0.57 Score=40.85 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=42.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC------------C----CCeEEEEccCCCC-----C-
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE------------A----DNLKYIAGDMFRF-----I- 230 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~------------~----~ri~~~~gD~f~~-----~- 230 (239)
+..+|||+|||.|..+.-..+..+ -+.+++|+. +.|++|++ . =...++.+|.|.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 567999999999999999988632 257999994 45665542 1 2357789988862 1
Q ss_pred -C--CceEEEe
Q 046950 231 -P--PADAFLF 238 (239)
Q Consensus 231 -p--~~D~~~l 238 (239)
+ .+|++-+
T Consensus 141 ~~~~~FDvVSc 151 (331)
T PF03291_consen 141 PRSRKFDVVSC 151 (331)
T ss_dssp STTS-EEEEEE
T ss_pred ccCCCcceeeh
Confidence 2 2888753
No 220
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=88.32 E-value=0.88 Score=39.31 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=41.2
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCC-eEEEeehHHH-HhcCCC--------CC----CeEEEEccCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGI-KCTVLDLPHA-VANLPE--------AD----NLKYIAGDMFR 228 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dlp~v-i~~a~~--------~~----ri~~~~gD~f~ 228 (239)
+....++|+|||-|..++..-++ .+ ..+..|+.+| |.+++. .+ .+.|+++|-|.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 56778999999999999888876 44 4799999874 666653 12 36899999876
No 221
>PRK10742 putative methyltransferase; Provisional
Probab=88.09 E-value=1 Score=37.52 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=52.5
Q ss_pred HHHHHHhhhhhhcCCC--cEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHh--------cCC------C--CCCeEEE
Q 046950 161 TFVVKSECKQIFEGLG--SLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVA--------NLP------E--ADNLKYI 222 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~--~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~--------~a~------~--~~ri~~~ 222 (239)
+.++ +... +++.. +|||.=+|.|..+..++.. ..+++.+|...++. .+. . ..|++++
T Consensus 76 ~~l~-kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVA-KAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHH-HHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 3455 6554 44433 8999999999999999988 77799999944322 221 1 2679999
Q ss_pred EccCCC---CCCC-ceEEEe
Q 046950 223 AGDMFR---FIPP-ADAFLF 238 (239)
Q Consensus 223 ~gD~f~---~~p~-~D~~~l 238 (239)
.+|..+ ..+. +|+|+|
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 999766 3443 999986
No 222
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=87.69 E-value=1 Score=37.77 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=40.6
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCCCCCCeEEEEccCCCCCCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLPEADNLKYIAGDMFRFIPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~~~~ri~~~~gD~f~~~p~-~D~~~l 238 (239)
...++||||.|.|.....++..+.++ .+=+... +....+ ..+++.+..|=+..-+. +|+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v--~aTE~S~~Mr~rL~-~kg~~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEV--YATEASPPMRWRLS-KKGFTVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceE--EeecCCHHHHHHHH-hCCCeEEehhhhhccCCceEEEee
Confidence 35789999999999999999988873 3334433 222222 45566666654454443 888753
No 223
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.48 E-value=0.16 Score=44.26 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=28.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCe-EEEeehH
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDLP 207 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dlp 207 (239)
+++|||||-|.|.-+.++-.-+|+++ +++++..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~s 147 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEAS 147 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccC
Confidence 57899999999999999999999997 5667763
No 224
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.48 E-value=2 Score=38.08 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=54.0
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCe---------------------------------------
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIK--------------------------------------- 200 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~--------------------------------------- 200 (239)
+..++ ..-. |.+...++|==||+|+++++.+...+++-
T Consensus 180 AaAil-~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 180 AAAIL-LLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHH-HHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 34444 4333 45557999999999999999998887532
Q ss_pred EEEeeh-HHHHhcCC-------CCCCeEEEEccCCC-CCC--CceEEEe
Q 046950 201 CTVLDL-PHAVANLP-------EADNLKYIAGDMFR-FIP--PADAFLF 238 (239)
Q Consensus 201 ~~~~Dl-p~vi~~a~-------~~~ri~~~~gD~f~-~~p--~~D~~~l 238 (239)
.++.|. |.+++.|+ ..+-|+|..+|+-. +-| ++|+++.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~ 305 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS 305 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence 668999 56666554 27789999999754 223 3787764
No 225
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.21 E-value=0.37 Score=43.83 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHH
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEA 195 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~ 195 (239)
.+.+++||||||.|.|+..|+++
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC
Confidence 35689999999999999999997
No 226
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=86.16 E-value=1.6 Score=35.29 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCcEEEec---CcchHHHHHHHHHC-CCCeEEEeeh--HH----HHhcCCCCCCeEEEEccCCC
Q 046950 174 GLGSLVDVG---GGNGTFSRIISEAF-PGIKCTVLDL--PH----AVANLPEADNLKYIAGDMFR 228 (239)
Q Consensus 174 ~~~~vvDVG---GG~G~~~~~l~~~~-P~l~~~~~Dl--p~----vi~~a~~~~ri~~~~gD~f~ 228 (239)
++.+|+.+| ||+-.+.+.+++.. ++.+++.+|+ +. +++.-+..+||+++.||--+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 478999999 45555556667777 8889999999 22 22222225899999999865
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=85.93 E-value=4.1 Score=34.46 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=62.7
Q ss_pred HHHHHHHhhchhhhH----HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeehHH-----HHhcCCC
Q 046950 146 QRFNEAMASDSEIMT----TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDLPH-----AVANLPE 215 (239)
Q Consensus 146 ~~f~~~m~~~~~~~~----~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dlp~-----vi~~a~~ 215 (239)
+.|..+|...++... ..++ ..++ .....+||+-|.|+|.++.++++.- |.=+..-||.-+ +.++.++
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~-~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~ 152 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMIL-SMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE 152 (314)
T ss_pred HHhhhhccCcceEEecccHHHHH-HHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH
Confidence 456667776666432 3345 5555 6678899999999999999999976 777888888833 3333332
Q ss_pred ---CCCeEEEEccCCCC-CC--C--ceEEEe
Q 046950 216 ---ADNLKYIAGDMFRF-IP--P--ADAFLF 238 (239)
Q Consensus 216 ---~~ri~~~~gD~f~~-~p--~--~D~~~l 238 (239)
.+.+++...|.=.. ++ + ||+++|
T Consensus 153 hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 153 HGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred hCCCcceEEEEeecccCCccccccccceEEE
Confidence 67788888887552 22 2 888876
No 228
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=85.66 E-value=0.57 Score=28.82 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=26.3
Q ss_pred hChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeee
Q 046950 38 LGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKT 69 (239)
Q Consensus 38 lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~ 69 (239)
+.|++.|.++++++++.| +|..|...|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 457888888767778887 88889999999986
No 229
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.40 E-value=4.8 Score=31.73 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=41.1
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC---------CCCeEEEEccCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE---------ADNLKYIAGDMFR 228 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~---------~~ri~~~~gD~f~ 228 (239)
++...||-+|||-=+....+...+|+++++=+|+|+|++.-+. ..++++++.|+.+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 4566999999999999999999889999999999998875331 1235679999986
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=84.49 E-value=1.6 Score=36.97 Aligned_cols=64 Identities=16% Similarity=0.366 Sum_probs=36.4
Q ss_pred CCcEEEecCcchHHH-HHHHHHC-CCCeEEEeeh-HHHHhcCCC--------CCCeEEEEccCCC---CCCCceEEEe
Q 046950 175 LGSLVDVGGGNGTFS-RIISEAF-PGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMFR---FIPPADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~-~~l~~~~-P~l~~~~~Dl-p~vi~~a~~--------~~ri~~~~gD~f~---~~p~~D~~~l 238 (239)
+++|+=||+|.=-+. +.+++.+ ++.+++++|. |+.++.++. ..|++|+.+|..+ ++-.+|+|++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 469999999976664 4555443 7889999999 666665532 7899999999875 2345899886
No 231
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=84.37 E-value=0.65 Score=40.84 Aligned_cols=47 Identities=32% Similarity=0.503 Sum_probs=34.2
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEcc
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGD 225 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD 225 (239)
+|+|+=||.|.++..|++..- +++++|. ++.++.|+. -++++|+.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence 799999999999999998765 5777787 567776652 5678998764
No 232
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=83.67 E-value=2.4 Score=36.24 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCcEEEecCcchHH----HHHHHHHCC----CCeEEEeeh-HHHHhcCCC------------------------------
Q 046950 175 LGSLVDVGGGNGTF----SRIISEAFP----GIKCTVLDL-PHAVANLPE------------------------------ 215 (239)
Q Consensus 175 ~~~vvDVGGG~G~~----~~~l~~~~P----~l~~~~~Dl-p~vi~~a~~------------------------------ 215 (239)
.-+|...||++|.= ++.+.+..| +++++.-|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 35899999999963 444445433 467899999 446655431
Q ss_pred -------CCCeEEEEccCCC-CCC--C-ceEEEeC
Q 046950 216 -------ADNLKYIAGDMFR-FIP--P-ADAFLFK 239 (239)
Q Consensus 216 -------~~ri~~~~gD~f~-~~p--~-~D~~~l~ 239 (239)
..+|+|..+|.++ +.| . +|+|+.+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR 230 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR 230 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh
Confidence 2568999999998 444 3 9999863
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=83.50 E-value=5.8 Score=32.48 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=52.7
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC-----CCCeEEEEc---cCCCCCCC--ceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE-----ADNLKYIAG---DMFRFIPP--ADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~-----~~ri~~~~g---D~f~~~p~--~D~~~ 237 (239)
..+..+||.||=|-|.....+.++.|..+.|+---|.|....+. .++|....| |....+|. ||=|+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 46688999999999999999999999999999999999987764 556777776 44445653 66554
No 234
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.17 E-value=1.9 Score=36.22 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=32.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-----CCCeEEEeehHH
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-----PGIKCTVLDLPH 208 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~~~Dlp~ 208 (239)
+.+...+|+.|+|.|.++..+.+.. +..+++++|+..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 4567899999999999999999998 567899999943
No 235
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=83.15 E-value=0.43 Score=33.83 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEecCcchHHHHHHHHHCCCC---eEEEeehHH----HHhcCCC---CCCeEEEEccCCC---CCC--CceEEEe
Q 046950 179 VDVGGGNGTFSRIISEAFPGI---KCTVLDLPH----AVANLPE---ADNLKYIAGDMFR---FIP--PADAFLF 238 (239)
Q Consensus 179 vDVGGG~G~~~~~l~~~~P~l---~~~~~Dlp~----vi~~a~~---~~ri~~~~gD~f~---~~p--~~D~~~l 238 (239)
|+||...|..+..+++..+.. +++.+|..+ +-+..+. .++++++.+|+.+ .++ .+|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 689999999999888887766 589999955 2233332 6789999999865 233 3777764
No 236
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=82.49 E-value=2.2 Score=36.65 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=33.8
Q ss_pred CCcEEEecCcchHH-HHHHHHHCCCCeEEEeeh-HHHHhcCCC--------CCCeEEEEc----cCCCCC
Q 046950 175 LGSLVDVGGGNGTF-SRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAG----DMFRFI 230 (239)
Q Consensus 175 ~~~vvDVGGG~G~~-~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--------~~ri~~~~g----D~f~~~ 230 (239)
..+++|||+|+-.. .+.-++.| +++++.-|. +..++.|++ .+||+++.. ++|..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh
Confidence 56899999998854 44444444 899999999 445555542 678888644 577643
No 237
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=82.18 E-value=2.7 Score=28.71 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred hChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCccc
Q 046950 38 LGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAAS 84 (239)
Q Consensus 38 lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s 84 (239)
+.|++.|...+++.++.+ .++.|...|++.+... ++.|.+++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~---~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQ---NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCC---CCceeecHHH
Confidence 456777766435677776 7888999999998742 5678887643
No 238
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=82.17 E-value=1.3 Score=40.56 Aligned_cols=55 Identities=25% Similarity=0.460 Sum_probs=42.9
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC------CCCeEEEEc---cCCC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAG---DMFR 228 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~g---D~f~ 228 (239)
++..+.++||=||+|.++.++++. -.+++.+++ |+.++.|+. ..+.+|++| |.|.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 455689999999999999999885 456788877 777777653 567899998 5554
No 239
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.25 E-value=2 Score=35.56 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHHHHHhhhhhhcCC--CcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCC-----------C-----CCCeEEE
Q 046950 161 TFVVKSECKQIFEGL--GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLP-----------E-----ADNLKYI 222 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~-----------~-----~~ri~~~ 222 (239)
+.++ +... +.+. .+|||.=+|-|..+..++.. ..+++.++..+++...- + ..||+++
T Consensus 63 ~~l~-kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLA-KAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHH-HHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHH-HHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 3455 5554 3332 49999999999999998864 67899999976654321 1 3589999
Q ss_pred EccCCC--CCC--CceEEEe
Q 046950 223 AGDMFR--FIP--PADAFLF 238 (239)
Q Consensus 223 ~gD~f~--~~p--~~D~~~l 238 (239)
.+|..+ ..| .+|+|+|
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE
T ss_pred cCCHHHHHhhcCCCCCEEEE
Confidence 999877 343 3999986
No 240
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=80.37 E-value=1.9 Score=30.04 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHhCCceeeeccCCCccccccCccccccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLI 88 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 88 (239)
-+..|...|++++.. .|.|.+|+.++.+.
T Consensus 60 a~~~L~~aGli~~~~----rG~~~iT~~G~~~l 88 (92)
T PF14338_consen 60 ARSYLKKAGLIERPK----RGIWRITEKGRKAL 88 (92)
T ss_pred HHHHHHHCCCccCCC----CCceEECHhHHHHH
Confidence 677899999999876 68999999998544
No 241
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=79.63 E-value=2.2 Score=37.29 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=50.4
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-------CCCeEEEEccCCC--CC-CCceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMFR--FI-PPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-------~~ri~~~~gD~f~--~~-p~~D~~~l 238 (239)
...+|||.=+|.|.|++.++++-.-- ++..|+ |..++-..+ .++|+.+.||..+ +. +.||-|+|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEe
Confidence 36799999999999999998865433 999999 777664432 6779999999887 33 44998887
No 242
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=79.21 E-value=11 Score=28.82 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=24.1
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.-|+|+|=|+|.-=--|.+.+|+=+++|||.
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 5699999999999999999999999999999
No 243
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=78.88 E-value=2.2 Score=37.83 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=45.6
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCe---EEEeehHHHHhcCCC-------------CCCeEEEEccCCCC------
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIK---CTVLDLPHAVANLPE-------------ADNLKYIAGDMFRF------ 229 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~---~~~~Dlp~vi~~a~~-------------~~ri~~~~gD~f~~------ 229 (239)
......++|+|+|.|+....++...-.-+ +-++|-|+-+..... -.-++++.|+|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 34567999999999999877766554444 455555665443321 34589999999884
Q ss_pred CCCceEEEe
Q 046950 230 IPPADAFLF 238 (239)
Q Consensus 230 ~p~~D~~~l 238 (239)
++.+++|++
T Consensus 270 ~~eatvi~v 278 (419)
T KOG3924|consen 270 QTEATVIFV 278 (419)
T ss_pred hhcceEEEE
Confidence 345888775
No 244
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=78.73 E-value=2.3 Score=35.34 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=34.6
Q ss_pred HhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCcccc
Q 046950 37 ELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAAST 85 (239)
Q Consensus 37 ~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~ 85 (239)
-+.|+++|...+.++++.| +|..|...|++++++. +++|.+++..-
T Consensus 6 al~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~---~g~Y~Lg~~~~ 65 (246)
T COG1414 6 ALAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPE---DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEeehHHHH
Confidence 3567788877444556777 7888899999999963 57899997543
No 245
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=78.44 E-value=8.7 Score=35.60 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=43.1
Q ss_pred CCcEEEecCcchHHHHHHHHH----CCCCeEEEeeh-HHHHhcCCC------CCCeEEEEccCCC-CCC-C-ceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEA----FPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMFR-FIP-P-ADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~----~P~l~~~~~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~p-~-~D~~~ 237 (239)
...|+=+|||.|-+..+.+++ .-.++.++++- |.++--... .+||+.+..||.+ .-| . +|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH
Confidence 456788999999998776664 33455666666 544333221 7899999999987 434 3 88864
No 246
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=77.95 E-value=1.2 Score=37.93 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=49.5
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCe-EEEeehHH-HHhcCC----------CCCCeEEEEccCCC---CCC--Cce
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDLPH-AVANLP----------EADNLKYIAGDMFR---FIP--PAD 234 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dlp~-vi~~a~----------~~~ri~~~~gD~f~---~~p--~~D 234 (239)
.+++++++=||||.|-++++..++ +.+. ..++|..+ |++... +.+||....||=|. ..+ .+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999999997 7774 67777754 444332 27899999998444 443 389
Q ss_pred EEEe
Q 046950 235 AFLF 238 (239)
Q Consensus 235 ~~~l 238 (239)
+|+.
T Consensus 198 Vii~ 201 (337)
T KOG1562|consen 198 VIIT 201 (337)
T ss_pred EEEE
Confidence 8874
No 247
>PRK11569 transcriptional repressor IclR; Provisional
Probab=77.68 E-value=2.7 Score=35.50 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=34.6
Q ss_pred HhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCcccc
Q 046950 37 ELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAAST 85 (239)
Q Consensus 37 ~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~ 85 (239)
-+.|++.|.+.++++++.| +|.-|...|++.++.. .++|.+.+..-
T Consensus 30 al~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l~ 89 (274)
T PRK11569 30 GLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE---LGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEecCHHHH
Confidence 3456777776556788888 7888899999998753 68899886543
No 248
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=77.59 E-value=3.8 Score=36.48 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCCcEEEecCcchHHHH--------HHHHH-------CCCCeEEEeehHH
Q 046950 174 GLGSLVDVGGGNGTFSR--------IISEA-------FPGIKCTVLDLPH 208 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~--------~l~~~-------~P~l~~~~~Dlp~ 208 (239)
+.-+|+|+|||+|..+. ++.++ -|++++..=|+|.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ 112 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPS 112 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Confidence 35589999999996542 33333 3678999999984
No 249
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=75.60 E-value=3.1 Score=34.62 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=24.7
Q ss_pred CCcEEEecCcchHHHHHHHHHCCC--------CeEEEeehH
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPG--------IKCTVLDLP 207 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~--------l~~~~~Dlp 207 (239)
.-+||++|+|+|.++.-+++.... ++.++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 369999999999999988875443 478999884
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.55 E-value=3 Score=32.04 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=40.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCC-----C--CCCeEEEEccCCC-CCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLP-----E--ADNLKYIAGDMFR-FIP 231 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~-----~--~~ri~~~~gD~f~-~~p 231 (239)
+..++||+|.|.|....+.++.. -.+.+.+++ |..+.-.+ + ..+..|+--|+|+ ++-
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 34799999999999988888765 445788888 44444332 1 5667777778776 443
No 251
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=75.02 E-value=2.6 Score=35.79 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=41.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCCCCCCeEEEEccCCC-CCCC--ceEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLPEADNLKYIAGDMFR-FIPP--ADAF 236 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~~~~ri~~~~gD~f~-~~p~--~D~~ 236 (239)
.+....++|+|||.|.+... +|.+-.+..|+-. .+..++..+.....-.|... |.+. +|..
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccc
Confidence 34467899999999988653 4999999999965 55555543333566677766 4432 5543
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=74.81 E-value=6.7 Score=34.03 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=38.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCC----CCeEEEeehHH-HHhcC----C-C-CCCe--EEEEccCCCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFP----GIKCTVLDLPH-AVANL----P-E-ADNL--KYIAGDMFRF 229 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P----~l~~~~~Dlp~-vi~~a----~-~-~~ri--~~~~gD~f~~ 229 (239)
...+|||+|||+|.=...|+++.. ..+.+-+|+.. .++.+ + . -+.| .-+.|||.++
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 455899999999998776666553 46789999953 44332 2 1 2344 4489999763
No 253
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=74.49 E-value=6.2 Score=34.04 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=26.0
Q ss_pred CCcEEEecCcchHHHHHHHHHC--------------------CCCeEEEeeh
Q 046950 175 LGSLVDVGGGNGTFSRIISEAF--------------------PGIKCTVLDL 206 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~--------------------P~l~~~~~Dl 206 (239)
..+||-||||.|.=+.+|+..+ |.+.++++|.
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDi 138 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDI 138 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEe
Confidence 3699999999998877777666 3478899999
No 254
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=74.18 E-value=7.6 Score=34.50 Aligned_cols=38 Identities=32% Similarity=0.719 Sum_probs=31.2
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHH
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAV 210 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi 210 (239)
+.+..++||||.|.|+.+.-+.-.| ++.+..+|-..+.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRL 188 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHH
Confidence 6789999999999999998777655 6788888886543
No 255
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=73.87 E-value=6.9 Score=34.44 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHhhchhhhHHHHHHHhhhh-hhcCCCcEEEecCcchHHHHHHHH----HCC----CCeEEEeehH
Q 046950 141 NPAINQRFNEAMASDSEIMTTFVVKSECKQ-IFEGLGSLVDVGGGNGTFSRIISE----AFP----GIKCTVLDLP 207 (239)
Q Consensus 141 ~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~----~~P----~l~~~~~Dlp 207 (239)
.|++.+.|.+..+ .+++ +.++. ..+.+-++|.||.|.|+++.-+++ -+| .+++.+++..
T Consensus 51 Apels~lFGella-------~~~~-~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 51 APELSQLFGELLA-------EQFL-QLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhHHHHHHHHHH-------HHHH-HHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 4677778877543 3444 44331 133456899999999999776665 456 5577788773
No 256
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=73.67 E-value=3.9 Score=34.45 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=33.3
Q ss_pred hChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCcccc
Q 046950 38 LGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAAST 85 (239)
Q Consensus 38 lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~ 85 (239)
+.|++.|...+.++++.| +|.-|...|+|.++.. .++|.++...-
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ---LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEEecHHHH
Confidence 456677766545677777 8888899999998753 67899887443
No 257
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.71 E-value=20 Score=29.54 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=45.1
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCC-CeEEEeehHH--------HHhcCCCCCCeEEEEccCCC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPG-IKCTVLDLPH--------AVANLPEADNLKYIAGDMFR 228 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dlp~--------vi~~a~~~~ri~~~~gD~f~ 228 (239)
.-++++.+|||.=+|.-+.+.+.+-|+ -+++.+|.++ .++.|.....|+++.|.-.+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 446899999999999999999999986 3678888843 33334347789999998776
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=72.45 E-value=9.5 Score=31.68 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH-HHhcCCC-----CCCeEEEEccCCCCCCC-----ceEEE
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH-AVANLPE-----ADNLKYIAGDMFRFIPP-----ADAFL 237 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~~-----~~ri~~~~gD~f~~~p~-----~D~~~ 237 (239)
..++|+=||-..- .+++++...+.-+++|+|+.+ .++-+.. .-.|+.+.+|+..|+|. ||+++
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence 3678999995544 445555566777999999954 5444331 33499999999999883 89986
No 259
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=71.88 E-value=4.8 Score=33.72 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=35.3
Q ss_pred HhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCccccccc
Q 046950 37 ELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLI 88 (239)
Q Consensus 37 ~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 88 (239)
-+.|++.|...++++++.| +|+-|...|++.++.. +++|.+++....|.
T Consensus 13 al~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~---~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 13 GLMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSAS---DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC---CCcEEEcHHHHHHH
Confidence 3456677766545678877 8888999999998753 57899987554333
No 260
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=71.53 E-value=4.1 Score=33.72 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=34.9
Q ss_pred HhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCcccccc
Q 046950 37 ELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLL 87 (239)
Q Consensus 37 ~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l 87 (239)
-+.|++.+.....|+++.| +|.-|...|++.++ +++|.+++..-.|
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~~l 70 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHHHH
Confidence 3567788876556888888 78888999999986 4789998754433
No 261
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=70.26 E-value=9.8 Score=30.32 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=44.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCC-------CCCCeEEEEccCCCC------CCCceEEEe
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLP-------EADNLKYIAGDMFRF------IPPADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~-------~~~ri~~~~gD~f~~------~p~~D~~~l 238 (239)
..++||+=+|+|.++.+.+.+.- .+++.+|.. .++..++ ...+++++..|.+.- .+.+|+|++
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 57999999999999999888743 367888873 3333222 257888888887641 223899986
No 262
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=69.80 E-value=4.8 Score=33.77 Aligned_cols=53 Identities=11% Similarity=0.250 Sum_probs=43.5
Q ss_pred HHHHHHHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCccccccccC
Q 046950 31 SLKCAIELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIKD 90 (239)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~ 90 (239)
.+....+.+|+-.|.+ ||.|.+| -++-|...|++.++ ++.|++|..++.++..
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~-----~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQE-----GDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEec-----CCEEEecchHHHHHHH
Confidence 4455678888889988 8999999 45677899999998 5899999999977753
No 263
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=68.07 E-value=5.8 Score=33.06 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=30.9
Q ss_pred ChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCccccc
Q 046950 39 GIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTAASTL 86 (239)
Q Consensus 39 glfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~ 86 (239)
.|++.|... +++++.| +|+-|...|++.++.. +++|.+++..-.
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~---~~~Y~lG~~~~~ 75 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGE---SEKYSLTLKLFE 75 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEEecHHHHH
Confidence 344555443 4566666 8889999999998743 588999975543
No 264
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=67.78 E-value=3.3 Score=33.77 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=37.4
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCC-CCCC-----ceEEEeC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFR-FIPP-----ADAFLFK 239 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~-~~p~-----~D~~~l~ 239 (239)
-++||||+=+..... ..++-+.++-+||-+. .+ .+...||++ |+|. ||+|.++
T Consensus 53 lrlLEVGals~~N~~---s~~~~fdvt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC---STSGWFDVTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcc---cccCceeeEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEE
Confidence 599999987554333 2466777899999662 22 356789999 7772 8999764
No 265
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.83 E-value=11 Score=31.32 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH--HHHhcCCCCCCeEEEEc
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP--HAVANLPEADNLKYIAG 224 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp--~vi~~a~~~~ri~~~~g 224 (239)
..+ +.++ .....+.++|||..+|-|...+++. ---++..+|.- +.....+..+||..++.
T Consensus 69 ~al-e~F~-l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~ 130 (245)
T COG1189 69 KAL-EEFE-LDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRNDPRVIVLER 130 (245)
T ss_pred HHH-HhcC-cCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcCCcEEEEec
Confidence 345 5555 3346789999999999999998886 22357777773 33334444666655554
No 266
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=66.82 E-value=6.8 Score=35.02 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=49.1
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCC-eEEEeehHH-HHhcCCC--------CCCeEEEEccCCCC----C--C-CceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGI-KCTVLDLPH-AVANLPE--------ADNLKYIAGDMFRF----I--P-PADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l-~~~~~Dlp~-vi~~a~~--------~~ri~~~~gD~f~~----~--p-~~D~~~ 237 (239)
.++|||+=|=+|.++...+.. .. ++|.+|+.. +++.+++ .+++.++.+|.|+- . . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 789999999999999888775 55 799999954 5555542 67899999999982 2 2 399998
Q ss_pred e
Q 046950 238 F 238 (239)
Q Consensus 238 l 238 (239)
+
T Consensus 296 l 296 (393)
T COG1092 296 L 296 (393)
T ss_pred E
Confidence 7
No 267
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=65.31 E-value=13 Score=31.18 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=40.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeehHHHHhcCC---------CCCCeEEEEccCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDLPHAVANLP---------EADNLKYIAGDMFR 228 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dlp~vi~~a~---------~~~ri~~~~gD~f~ 228 (239)
.+...||.+|||-=.....+. .| ++++.=+|+|+|++.=+ ...++.+++.|+.+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred cCCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 456789999999877776663 34 68899999999877321 25789999999873
No 268
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=64.95 E-value=9.2 Score=31.79 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC--------CCCeEEEEccCCC---CCC-C-ceEEE
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMFR---FIP-P-ADAFL 237 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--------~~ri~~~~gD~f~---~~p-~-~D~~~ 237 (239)
...+|+|.=+|-|..+++.+++-- ++++-++- |.|++.|.. ..+|+.+.||.++ .++ + +|+|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 467999999999999999988733 25555555 778877652 4579999999988 455 2 88886
No 269
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=62.49 E-value=8.6 Score=32.10 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=29.8
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLP 214 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~ 214 (239)
....+|.+|+|+|..++ ++..+....++.-|+|.+++...
T Consensus 86 ~~~~vlELGsGtglvG~-~aa~~~~~~v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGI-LAALLLGAEVVLTDLPKVVENLK 125 (248)
T ss_pred cceeEEEecCCccHHHH-HHHHHhcceeccCCchhhHHHHH
Confidence 35679999999994444 44445778899999988776543
No 270
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=62.31 E-value=12 Score=26.81 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=31.2
Q ss_pred EEEecCcchHHHHHHHHHCCC-CeEEEeehHH-HHhcCCC-C--CC---eEEEEccCCC
Q 046950 178 LVDVGGGNGTFSRIISEAFPG-IKCTVLDLPH-AVANLPE-A--DN---LKYIAGDMFR 228 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dlp~-vi~~a~~-~--~r---i~~~~gD~f~ 228 (239)
++|+|||.|... .+.+..+. ..++.+|... .+..+.. . .. +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999987 44444443 4677788843 3333221 1 11 5788888764
No 271
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=61.83 E-value=9.4 Score=24.29 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=18.9
Q ss_pred HHHHHHhCCceeeeccC-C-CccccccCccc
Q 046950 56 LMRLLVHSGCFKKTKVN-G-EEEAYGLTAAS 84 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~-~-~~~~y~~t~~s 84 (239)
+++-|...|++++.... + ....|.+|+.+
T Consensus 38 ~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 38 IIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 88999999999877531 1 12357777643
No 272
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=61.66 E-value=19 Score=31.09 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=36.3
Q ss_pred ecCcchHHHH----HHHHHCCCCeEEEeeh------HHHHhcCCCCCCeEEEEccCCC
Q 046950 181 VGGGNGTFSR----IISEAFPGIKCTVLDL------PHAVANLPEADNLKYIAGDMFR 228 (239)
Q Consensus 181 VGGG~G~~~~----~l~~~~P~l~~~~~Dl------p~vi~~a~~~~ri~~~~gD~f~ 228 (239)
|=||.|..+. .+++.+|+.+++++|. ++.+......+|++|+.+|+-+
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 5578887655 5566899999999998 4555545557799999999875
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=61.63 E-value=9.9 Score=33.26 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=41.7
Q ss_pred hcCCCcEEEecC-cchHHHHHHHHHCCCCeEEEeehHH-HHhcCCCCCCeEEEE---ccCCCCCCC-ceEEE
Q 046950 172 FEGLGSLVDVGG-GNGTFSRIISEAFPGIKCTVLDLPH-AVANLPEADNLKYIA---GDMFRFIPP-ADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGG-G~G~~~~~l~~~~P~l~~~~~Dlp~-vi~~a~~~~ri~~~~---gD~f~~~p~-~D~~~ 237 (239)
..+.++|+=+|. |.|+++++++++.- .+++++|..+ -.+.|++-..-.++. -|..++++. +|+++
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEE
Confidence 334556655553 78899999999877 9999999954 565565533323333 344445544 77765
No 274
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=61.37 E-value=11 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=27.9
Q ss_pred CcEEEecCc-chHHHH-HHHHHCCCCeEEEeehHHH
Q 046950 176 GSLVDVGGG-NGTFSR-IISEAFPGIKCTVLDLPHA 209 (239)
Q Consensus 176 ~~vvDVGGG-~G~~~~-~l~~~~P~l~~~~~Dlp~v 209 (239)
..|+-|||| +|..+. .|+++.|..+++++|-..+
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 469999999 788866 7777789999999997543
No 275
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.00 E-value=14 Score=31.81 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=38.9
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCC-CCeEEEeehHHHHhcC----CC-----CCCeEEEEccCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFP-GIKCTVLDLPHAVANL----PE-----ADNLKYIAGDMFR 228 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dlp~vi~~a----~~-----~~ri~~~~gD~f~ 228 (239)
.+...||-+|||-=.- ...-.+| .+++.=+|+|+|++.= ++ ..+++.++.|+++
T Consensus 91 ~g~~qvViLgaGLDTR--ayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 91 AGIRQVVILGAGLDTR--AYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred hcccEEEEeccccccc--eeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 4478999999885443 3444455 4788888999998841 12 3489999999994
No 276
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=60.62 E-value=4.4 Score=33.08 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC-----CCCe-EEEEcc--CCCCCCC-ceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNL-KYIAGD--MFRFIPP-ADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~-----~~ri-~~~~gD--~f~~~p~-~D~~~l 238 (239)
+..+.||.|+|.|.....++..+= -++-++|- +.-++.|++ ..++ ++.+.. =|+|.+. +|+|+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEe
Confidence 467999999999999998765431 13555555 444555442 2332 333322 2246554 999975
No 277
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=59.00 E-value=23 Score=26.04 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHhCh--hhHhhhCCCCCC---HHHHHHHHHhCCceeeeccCC--CccccccCcccc
Q 046950 13 FQGQAQLYKLMFNHLSSMSLKCAIELGI--ADIIHSHGRAIT---LSELMRLLVHSGCFKKTKVNG--EEEAYGLTAAST 85 (239)
Q Consensus 13 ~~~~~~l~~~~~g~~~~~~L~~a~~lgl--fd~L~~~~~~~t---~~elLr~L~~~g~l~~~~~~~--~~~~y~~t~~s~ 85 (239)
.-+.....+++.+-|...+|+...+ |. |..|...-+++| +.+-|+.|...|++.+..-.. -.-.|++|+.++
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~-g~~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~ 88 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD-GPKRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGR 88 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc-CCCcHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHH
Confidence 4567888999999999999998877 64 788876422243 344899999999999885200 012488888777
Q ss_pred ccc
Q 046950 86 LLI 88 (239)
Q Consensus 86 ~l~ 88 (239)
.|.
T Consensus 89 ~L~ 91 (120)
T COG1733 89 DLL 91 (120)
T ss_pred HHH
Confidence 555
No 278
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=58.85 E-value=16 Score=26.09 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=13.2
Q ss_pred HHHHHHhCCceeeec
Q 046950 56 LMRLLVHSGCFKKTK 70 (239)
Q Consensus 56 lLr~L~~~g~l~~~~ 70 (239)
.|+.|...|++.+..
T Consensus 41 ~L~~L~~~Gli~~~~ 55 (116)
T cd07153 41 TLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHhCCCEEEEE
Confidence 788999999999875
No 279
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=58.61 E-value=17 Score=30.23 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=32.0
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLP 214 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~ 214 (239)
+..+++.|||||.|+....|.++. --+.+..|.. .+++.++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~ 112 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCR 112 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhh
Confidence 346799999999999999999986 3368888885 3566554
No 280
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=58.34 E-value=9.4 Score=25.51 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=22.7
Q ss_pred HHHHHHhCCceeeeccCCCccccccCccccccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLI 88 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 88 (239)
.|+.|...|+++.. ++.|.+|+.+.-+.
T Consensus 39 yL~~L~~~gLI~~~-----~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 39 YLKELEEKGLIKKK-----DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHHHHTTSEEEE-----TTEEEE-HHHHHHH
T ss_pred HHHHHHHCcCeeCC-----CCEEEECccHHHHH
Confidence 88999999999775 68999999987443
No 281
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=57.96 E-value=21 Score=23.19 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHhChhhHhhhCCC-CCCHHH--------------HHHHHHhCCceeeeccCCCccccccCc
Q 046950 36 IELGIADIIHSHGR-AITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTA 82 (239)
Q Consensus 36 ~~lglfd~L~~~~~-~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~ 82 (239)
.+-.|+..|...++ ++++.| +|.-|...|+|..... .++.|.++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~--~~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGG--TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC--CCCceEeec
Confidence 45567777777643 277776 7778889999998642 136777654
No 282
>PRK09273 hypothetical protein; Provisional
Probab=56.76 E-value=17 Score=29.44 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=33.7
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
++.....=++||+|.-....+.++|.+++.+.--|.....++.
T Consensus 61 ~g~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~ 103 (211)
T PRK09273 61 SKAVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQ 103 (211)
T ss_pred cCCCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 4556678899999999999999999999766666665555543
No 283
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.66 E-value=48 Score=24.34 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=43.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCCCCC----CceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIP----PADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~~p----~~D~~~ 237 (239)
...++||.||-|.=......++++- ..+++.|..+- .+ ..+++++.-|.|.|-- .+|+|+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERG-FDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcC-CcEEEEecccc--cC--cccceEEEccCCCccHHHhhCcccee
Confidence 4567999999888777666666654 77888888654 33 3679999999999732 266664
No 284
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=56.53 E-value=19 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHHHhCCceeeeccCCCccccccCcccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAAST 85 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~ 85 (239)
-|++|-..|++.+.. -+.+.+|+.+.
T Consensus 38 rLr~me~~Glt~~~g----~~G~~iT~~G~ 63 (66)
T PF08461_consen 38 RLRAMERDGLTRKVG----RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHCCCccccC----CcccccCHHHH
Confidence 688889999777654 34456776654
No 285
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=55.89 E-value=17 Score=22.80 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=29.6
Q ss_pred HHHHHHHHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeec
Q 046950 30 MSLKCAIELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTK 70 (239)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~ 70 (239)
.+|.--.++.|+..|... +|.|+.| -|+.|...|+++...
T Consensus 5 ~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 5 KALSDPTRLRILRLLASN-GPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 344445677788888443 6888877 578889999999875
No 286
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=54.07 E-value=43 Score=25.72 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCCcEEEecCcchHH--HHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCC-CCCCceEEEe
Q 046950 174 GLGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFR-FIPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~-~~p~~D~~~l 238 (239)
..+++|=||||.=.. +..|++. +.++++++ |+..+...+.+++++....|-+ .+..+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 457899999997555 3345554 44566664 5544443333456666555544 2444787764
No 287
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=54.06 E-value=40 Score=30.96 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=45.7
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCC-CeEEEeehHH-HHh----cCCC--CCCeEEEEccCCC---CCCC-ceEEEe
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPG-IKCTVLDLPH-AVA----NLPE--ADNLKYIAGDMFR---FIPP-ADAFLF 238 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dlp~-vi~----~a~~--~~ri~~~~gD~f~---~~p~-~D~~~l 238 (239)
....+|||+++|.|.=+..++....+ -.++..|+.. =+. ++.. ...|.+...|.-. ..|. ||.|++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 45679999999999999999998754 4788899832 222 2211 3457777777543 3455 898875
No 288
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=53.96 E-value=37 Score=29.29 Aligned_cols=38 Identities=32% Similarity=0.550 Sum_probs=29.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCC--CCeEEEeehHHH
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFP--GIKCTVLDLPHA 209 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~~~Dlp~v 209 (239)
+....+|+=+|||+-.+...+.+.+| +-++++.|-|+.
T Consensus 270 ~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqf 309 (318)
T PF06406_consen 270 FSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQF 309 (318)
T ss_dssp S-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGG
T ss_pred hccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchh
Confidence 45567899999999999999999977 677999998873
No 289
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=53.23 E-value=28 Score=33.41 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCeEE
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIKCT 202 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~ 202 (239)
...++ ..+. . ..+-.+=+|-|+|.+...+++.||..|++
T Consensus 312 lRsIL-~~~~--i-~~~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 312 LRSIL-KNLN--I-KYRDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred HHHHH-HhcC--C-CcceeEEEecCchHHHHHHHHhCccccee
Confidence 35556 5554 2 23567889999999999999999999973
No 290
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=52.55 E-value=17 Score=29.66 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=35.7
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHH-hc----CCC--CCCeE-EEEccCCC-C-CC--CceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAV-AN----LPE--ADNLK-YIAGDMFR-F-IP--PADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi-~~----a~~--~~ri~-~~~gD~f~-~-~p--~~D~~~ 237 (239)
-..||+||||+|..-.- ..--|..+++.+|-.+-. +. +++ ...++ |+.++--+ + ++ ++|+|+
T Consensus 77 K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 35689999999986421 112246678999985432 22 222 33455 67666522 2 22 378775
No 291
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=52.29 E-value=15 Score=27.96 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=37.3
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC--CCCeEEEEccC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE--ADNLKYIAGDM 226 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~--~~ri~~~~gD~ 226 (239)
+....-=+.||+|.-....+.++|.+|+.+.--|.....++. ..+|-.+++.+
T Consensus 54 g~~~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ 108 (144)
T TIGR00689 54 GEVSLGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVLCLGSRV 108 (144)
T ss_pred CCCceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 344456678999999999999999999877776766666654 33344444444
No 292
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=52.15 E-value=35 Score=26.67 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhChhh----HhhhCC-CCCCHHH---HHHHHHhCCceeeeccCCCccccccCccccc
Q 046950 25 NHLSSMSLKCAIELGIAD----IIHSHG-RAITLSE---LMRLLVHSGCFKKTKVNGEEEAYGLTAASTL 86 (239)
Q Consensus 25 g~~~~~~L~~a~~lglfd----~L~~~~-~~~t~~e---lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~ 86 (239)
..|...+++..+.+.=|+ .|+..- .++|.+| .|..|..+|++++.. +|.|..|..+-.
T Consensus 22 ~~W~~~~ir~l~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~----~g~y~~t~~~l~ 87 (171)
T PF14394_consen 22 SSWYHPAIRELLPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDG----DGKYVQTDKSLT 87 (171)
T ss_pred hhhHHHHHHHHhhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECC----CCcEEEecceee
Confidence 456667777777776554 444421 3778888 899999999999996 679999986554
No 293
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=51.94 E-value=15 Score=32.00 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=26.1
Q ss_pred CcEEEecCcc--hHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGN--GTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~--G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.+||-||.|. |.-...++.++|+++++++|..
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s 35 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDIS 35 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecC
Confidence 3678888874 6667778889999999999994
No 294
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=51.10 E-value=16 Score=27.75 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
+....-=+.||+|.-....+.++|.+|+.+.--+.....++.
T Consensus 55 ~~~~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 96 (143)
T TIGR01120 55 GEVDGGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRL 96 (143)
T ss_pred CCCceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 344456678999999999999999999877766666666554
No 295
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=50.93 E-value=25 Score=30.02 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=45.7
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehH-HHHhcCCC--------CCCeEEEEccCCCC------CCCceEEEe
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP-HAVANLPE--------ADNLKYIAGDMFRF------IPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~--------~~ri~~~~gD~f~~------~p~~D~~~l 238 (239)
..++|||+=|=+|.++...++ .--.+++.+|.. .+++.+++ .++++++.+|.|+- ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 467999999999999997665 334479999994 45555442 47899999999972 123999986
No 296
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=49.74 E-value=22 Score=32.01 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=25.2
Q ss_pred CcEEEecCcchHH--HHHHHHHCCCCeEEEeeh
Q 046950 176 GSLVDVGGGNGTF--SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 176 ~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dl 206 (239)
.+||=||||.|-+ +..|++..|+.+++++|.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC
Confidence 3799999998866 456777788999999987
No 297
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=49.33 E-value=11 Score=28.53 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=35.6
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC--CCCeEEEEccC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE--ADNLKYIAGDM 226 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~--~~ri~~~~gD~ 226 (239)
++....-=+.||+|.-..-.+.++|.+++.+.--|.....++. ..+|-.+++.+
T Consensus 54 ~~~~d~GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~ 109 (140)
T PF02502_consen 54 SGEADRGILICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDANVLCLGARV 109 (140)
T ss_dssp TTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEEEEETTT
T ss_pred cccCCeEEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCcEEEechhh
Confidence 3344456688999999999999999999877777777666654 33455555544
No 298
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=30 Score=29.93 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=36.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC--CCCeEEEeehHHHHhc
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF--PGIKCTVLDLPHAVAN 212 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~~~Dlp~vi~~ 212 (239)
..+...||-+|||.=...-.|+..+ +.++++=+|.|++++.
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~r 127 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVER 127 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHH
Confidence 4667899999999999999999988 8889999999998763
No 299
>PF14881 Tubulin_3: Tubulin domain
Probab=48.24 E-value=20 Score=28.32 Aligned_cols=44 Identities=30% Similarity=0.564 Sum_probs=32.5
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHH----HHCCCCeE-EEeeh
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIIS----EAFPGIKC-TVLDL 206 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~----~~~P~l~~-~~~Dl 206 (239)
..++ +.+| .+.|...++|+-+|=|.++..++ .+||+..+ .+.-+
T Consensus 65 R~f~-EECD-~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~ 113 (180)
T PF14881_consen 65 RFFL-EECD-SLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGL 113 (180)
T ss_pred HHHH-HHcc-cccceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecC
Confidence 5678 9998 57899999999888888766554 47888774 33333
No 300
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=48.07 E-value=19 Score=27.50 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=35.6
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC--CCCeEEEEccC
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE--ADNLKYIAGDM 226 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~--~~ri~~~~gD~ 226 (239)
..-=+-||+|.-....+.++|.+|+.+.--+.....++. ..+|-.+++.+
T Consensus 60 ~~GIliCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ 111 (148)
T PRK05571 60 DRGILICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHNNANVLALGARV 111 (148)
T ss_pred CEEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 344567999999999999999999877777777676664 23344444444
No 301
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=47.39 E-value=43 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCCCHHH--------------HHHHHHhCCceeeeccCCCccccccCc
Q 046950 49 RAITLSE--------------LMRLLVHSGCFKKTKVNGEEEAYGLTA 82 (239)
Q Consensus 49 ~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~~y~~t~ 82 (239)
+|+++++ +|+.|...|++..... ..|.|.+..
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG--~~GGy~Lar 69 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG--PGGGYLLGK 69 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC--CCCCeeccC
Confidence 5777777 8999999999997631 256787765
No 302
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=47.11 E-value=16 Score=31.05 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=26.6
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 208 (239)
-..++|+|+|||+|.-.+......- .++..+|...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na 149 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNA 149 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecch
Confidence 3578999999999999886666532 6778888843
No 303
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=47.01 E-value=72 Score=27.35 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=33.1
Q ss_pred ChhhHhhhCCCCCCHHH-HHHHHHhCCceeeeccCCCccccccCcccccccc
Q 046950 39 GIADIIHSHGRAITLSE-LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIK 89 (239)
Q Consensus 39 glfd~L~~~~~~~t~~e-lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 89 (239)
.++.....+..|+.+.- +++.|...|++..+ ++...+|..++-++.
T Consensus 36 d~wkIvd~s~~plp~v~~i~~~l~~egiv~~~-----~g~v~~TekG~E~~e 82 (354)
T COG1568 36 DFWKIVDYSDLPLPLVASILEILEDEGIVKIE-----EGGVELTEKGEELAE 82 (354)
T ss_pred chHhhhhhccCCchHHHHHHHHHHhcCcEEEe-----cCcEeehhhhHHHHH
Confidence 34455544334554433 99999999999998 466999999987765
No 304
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=46.94 E-value=21 Score=21.16 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=21.8
Q ss_pred HhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceee
Q 046950 37 ELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKK 68 (239)
Q Consensus 37 ~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~ 68 (239)
++.|...|.+ +|.++.| -|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCcCeeC
Confidence 4556677766 6777776 6788888998864
No 305
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.88 E-value=31 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=25.5
Q ss_pred hhhHhhhCCCCCCHHH---HHHHHHhCCceeeeccCCCccccccCcc
Q 046950 40 IADIIHSHGRAITLSE---LMRLLVHSGCFKKTKVNGEEEAYGLTAA 83 (239)
Q Consensus 40 lfd~L~~~~~~~t~~e---lLr~L~~~g~l~~~~~~~~~~~y~~t~~ 83 (239)
|++.|.+.+.+++++. .|+.|...|++.+-...++.-+|..+.-
T Consensus 42 i~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~~ 88 (145)
T COG0735 42 LYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNSE 88 (145)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCCC
Confidence 3444443333445555 7899999999998863111223555544
No 306
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=46.73 E-value=20 Score=31.88 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHH----HHHHHHHC---CCCeEEEeehHH
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTF----SRIISEAF---PGIKCTVLDLPH 208 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~----~~~l~~~~---P~l~~~~~Dlp~ 208 (239)
..++ +.+. -...-+|||+|-|.|.. ..+|+++. |.+|+|+++.|.
T Consensus 100 qaIl-eA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~ 151 (374)
T PF03514_consen 100 QAIL-EAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPN 151 (374)
T ss_pred HHHH-HHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCC
Confidence 4566 6665 34567999999999975 44555543 788999999954
No 307
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=46.69 E-value=26 Score=27.27 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=26.1
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
+||=||||.+.+..+..-..++.+.+++|-
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 478899999999988888899999988864
No 308
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.39 E-value=22 Score=25.73 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=24.1
Q ss_pred hhhHhhhCCCCCCHHH---HHHHHHhCCceeeeccCCCccccccCc
Q 046950 40 IADIIHSHGRAITLSE---LMRLLVHSGCFKKTKVNGEEEAYGLTA 82 (239)
Q Consensus 40 lfd~L~~~~~~~t~~e---lLr~L~~~g~l~~~~~~~~~~~y~~t~ 82 (239)
|++.|...+..++.+. .|+.|...|++.+....++...|....
T Consensus 29 i~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~ 74 (120)
T PF01475_consen 29 IYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST 74 (120)
T ss_dssp HHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS
T ss_pred HHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC
Confidence 4444444333444444 788999999999886322223455544
No 309
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=46.08 E-value=25 Score=31.99 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=22.3
Q ss_pred cEEEecCcchHH--HHHHHHHCCC-CeEEEeehHH
Q 046950 177 SLVDVGGGNGTF--SRIISEAFPG-IKCTVLDLPH 208 (239)
Q Consensus 177 ~vvDVGGG~G~~--~~~l~~~~P~-l~~~~~Dlp~ 208 (239)
.||-||||+.-. +..|++.+|. +++++++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 478899998665 4467788887 9999999853
No 310
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=45.86 E-value=7.5 Score=27.26 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=17.9
Q ss_pred EEEecCcchHHHHHHHHHC-CCCeE----EEeeh
Q 046950 178 LVDVGGGNGTFSRIISEAF-PGIKC----TVLDL 206 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~-P~l~~----~~~Dl 206 (239)
=+|||||.|--..+--+.+ +.-.. +..|+
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSyYy~S~~~Dl 39 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSYYYLSTNHDL 39 (124)
T ss_pred ccccccCCCcchhhhhhccccccceEEEeecccc
Confidence 4799999998765544443 33333 45555
No 311
>PHA01634 hypothetical protein
Probab=45.44 E-value=27 Score=26.20 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=24.2
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCe-EEEeeh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl 206 (239)
..++|+|||++.|.-++-++-+ +++ ++.++-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~ 59 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEK 59 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEecc
Confidence 4689999999999999988775 444 555555
No 312
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=45.20 E-value=50 Score=27.95 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhCh----hhHhhhCCC-CCCHHH---HHHHHHhCCceeeeccCCCccccccCccccc
Q 046950 25 NHLSSMSLKCAIELGI----ADIIHSHGR-AITLSE---LMRLLVHSGCFKKTKVNGEEEAYGLTAASTL 86 (239)
Q Consensus 25 g~~~~~~L~~a~~lgl----fd~L~~~~~-~~t~~e---lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~ 86 (239)
..|.-.+++..+.+.= ...|+...+ ++|++| .|+.|..+|++++++ +|.|..|..+-.
T Consensus 120 ~~W~~~virel~~~~~~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~----~g~y~~t~~~l~ 185 (271)
T TIGR02147 120 RHWYNSVIRELLGVMPFADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNE----DGFYKQTDKAVS 185 (271)
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECC----CCcEEeecceee
Confidence 3566667777776632 234555333 578887 899999999999986 689999986443
No 313
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=45.11 E-value=43 Score=26.93 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCcEEEecCcchHHH--HHHHHHCCCCeEEEeeh--HHHHhcCCCCCCeEEEEccCCCC-CCCceEEEe
Q 046950 175 LGSLVDVGGGNGTFS--RIISEAFPGIKCTVLDL--PHAVANLPEADNLKYIAGDMFRF-IPPADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~--~~l~~~~P~l~~~~~Dl--p~vi~~a~~~~ri~~~~gD~f~~-~p~~D~~~l 238 (239)
.+++|=||||.=... ..|++. +.++++++- .+-+....+..+|+++.+++-.. +..+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~ 75 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIA 75 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEE
Confidence 468999999975553 344443 456667654 12222222245899999987542 444777764
No 314
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=45.02 E-value=35 Score=24.98 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeec
Q 046950 28 SSMSLKCAIELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTK 70 (239)
Q Consensus 28 ~~~~L~~a~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~ 70 (239)
.+.+|.--.++.|+..|... ++.++.| -|+.|...|+++...
T Consensus 9 ~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 34455555666677777543 3555444 789999999999876
No 315
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=44.62 E-value=48 Score=27.21 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCCcEEEecCcchHHH--HHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCC-CCCCceEEEe
Q 046950 174 GLGSLVDVGGGNGTFS--RIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFR-FIPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~--~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~p~~D~~~l 238 (239)
..++||=||||.-..- ..|++.-.+++++.-+. |++.+. ...++|+++..+|-. .+..+++++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l-~~~~~i~~~~r~~~~~dl~g~~LVia 91 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDL-KKYGNLKLIKGNYDKEFIKDKHLIVI 91 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHH-HhCCCEEEEeCCCChHHhCCCcEEEE
Confidence 3568999999988874 35556555655665566 343332 236679998877743 2434666553
No 316
>PF02981 FokI_N: Restriction endonuclease FokI, recognition domain; InterPro: IPR004234 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition and cleavage functions (IPR004233 from INTERPRO), respectively. The recognition domain is made of three smaller subdomains (D1, D2 and D3) which are evolutionarily related to the helix-turn-helix-containing DNA-binding domain of the catabolite gene activator protein CAP []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=43.86 E-value=12 Score=28.26 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=26.4
Q ss_pred HHHHHHhCCceeeeccCCCccccccCcccccccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIK 89 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~ 89 (239)
+||..+++||++.... .+.|.+|.+++.++.
T Consensus 112 flrwAvslgfl~~~~~---~Dtf~IT~lG~~~~~ 142 (145)
T PF02981_consen 112 FLRWAVSLGFLDYDRE---TDTFSITELGKKYVK 142 (145)
T ss_dssp HHHHHHHTTSEEEETT---TTEEEE-HHHHHHHH
T ss_pred eeeeeeeeCceeeccC---CCEEEeehhHHHHhh
Confidence 9999999999999865 789999999986653
No 317
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=43.04 E-value=81 Score=24.57 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=44.0
Q ss_pred HHHhHHHHHHHHHHHHhCh-------hhHhhhCCCCCCHHH---------------HHHHHHhCCceeeeccCCCccccc
Q 046950 22 LMFNHLSSMSLKCAIELGI-------ADIIHSHGRAITLSE---------------LMRLLVHSGCFKKTKVNGEEEAYG 79 (239)
Q Consensus 22 ~~~g~~~~~~L~~a~~lgl-------fd~L~~~~~~~t~~e---------------lLr~L~~~g~l~~~~~~~~~~~y~ 79 (239)
..++.|...|+.+|.+.++ +.++...+.|.++++ -||-|...|+++.... +.+-.|.
T Consensus 63 ~Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~eDth~itYslrKL~k~gLit~t~~-gkevTy~ 141 (199)
T COG5631 63 EAFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNREDTHNITYSLRKLLKGGLITRTGS-GKEVTYE 141 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHhccceecCCC-CceEEEE
Confidence 3557788999999988773 344444456888887 5788899999998752 1123577
Q ss_pred cCcccc
Q 046950 80 LTAAST 85 (239)
Q Consensus 80 ~t~~s~ 85 (239)
.|+.+.
T Consensus 142 vTa~G~ 147 (199)
T COG5631 142 VTALGH 147 (199)
T ss_pred EecchH
Confidence 777664
No 318
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=42.95 E-value=28 Score=25.87 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCCCCCC----ceEEE
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIPP----ADAFL 237 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~~p~----~D~~~ 237 (239)
.+..++|.||=|.=.-....++++- ..+++.|.-+. .+ ..+++++.=|.|+|-.. +|+|+
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEE
Confidence 3456999999887776665555544 88999998543 22 36789999999997542 67765
No 319
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=42.45 E-value=30 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=16.9
Q ss_pred EecCcch--HHHHHHH--HHCCCCeEEEeeh
Q 046950 180 DVGGGNG--TFSRIIS--EAFPGIKCTVLDL 206 (239)
Q Consensus 180 DVGGG~G--~~~~~l~--~~~P~l~~~~~Dl 206 (239)
|||++.| .....+. +..|..+++.+|-
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep 31 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEP 31 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE--
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEEC
Confidence 8999999 5555543 5678999999998
No 320
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=41.12 E-value=31 Score=29.44 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=34.8
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCe----EEEeehHHHHhcCCCCCCeEEEEccCCC
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIK----CTVLDLPHAVANLPEADNLKYIAGDMFR 228 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~----~~~~Dlp~vi~~a~~~~ri~~~~gD~f~ 228 (239)
.+..+||=+|.+.|....-|...||+++ .++.|-.+-.....+...|+++ .+||+
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~-~~fft 115 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLI-QRFFT 115 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEE-ES---
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEee-hhhCC
Confidence 3457999999999999999999999865 8999985554444444446654 35555
No 321
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=41.01 E-value=17 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=23.0
Q ss_pred HHHHHHhCCceeeeccCC--CccccccCcccccccc
Q 046950 56 LMRLLVHSGCFKKTKVNG--EEEAYGLTAASTLLIK 89 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~ 89 (239)
-|+.|...|++++..... ..-.|++|+.++.|.+
T Consensus 39 ~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 39 RLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 688999999999874210 0124889988876653
No 322
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=40.46 E-value=24 Score=30.85 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=35.9
Q ss_pred hcCCCcEEEecCcchHHHHHH--------HHHC--------CCCeEEEeehHHH-----HhcCCC-------CCC--eEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRII--------SEAF--------PGIKCTVLDLPHA-----VANLPE-------ADN--LKY 221 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l--------~~~~--------P~l~~~~~Dlp~v-----i~~a~~-------~~r--i~~ 221 (239)
.++.-+|+|+||.+|..+..+ .+++ |+++++.=|+|.. ...... ... +..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345569999999999875533 2233 4578899999852 111111 122 567
Q ss_pred EEccCCCC-CCC--ceEEE
Q 046950 222 IAGDMFRF-IPP--ADAFL 237 (239)
Q Consensus 222 ~~gD~f~~-~p~--~D~~~ 237 (239)
++|.|+.. +|. -|+++
T Consensus 94 vpgSFy~rLfP~~Svh~~~ 112 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGH 112 (334)
T ss_dssp EES-TTS--S-TT-EEEEE
T ss_pred cCchhhhccCCCCceEEEE
Confidence 88999986 564 55543
No 323
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=40.23 E-value=30 Score=31.52 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
+...+||||.|+|.++....++--+ +++.++.
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~Ev 97 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEV 97 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehh
Confidence 4568999999999999988887744 3676665
No 324
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=40.11 E-value=31 Score=27.09 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=31.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
+....-=+.||+|.-....+.++|.+|+.+.--+.....++.
T Consensus 56 g~~d~GIliCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 97 (171)
T PRK12615 56 GQADLGVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKE 97 (171)
T ss_pred CCCCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 334456678999999999999999999866666666666554
No 325
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=39.32 E-value=23 Score=24.89 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=22.7
Q ss_pred HHHHHHhCCceeeeccCCCccccccCccccccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLI 88 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 88 (239)
+++.|+..|++..... +....|.+|+.++-|.
T Consensus 51 yi~~L~~~Gli~~~~~-~~~~~y~lT~KG~~fl 82 (95)
T COG3432 51 YIEMLVEKGLIIKQDN-GRRKVYELTEKGKRFL 82 (95)
T ss_pred HHHHHHhCCCEEeccC-CccceEEEChhHHHHH
Confidence 9999999996666541 0112699999998553
No 326
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=39.28 E-value=32 Score=26.40 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=31.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
...+.=+.||+|.-..-.+.+.|.+++.+.--|.....+++
T Consensus 58 ~~d~GIliCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~ 98 (151)
T COG0698 58 EADLGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLARE 98 (151)
T ss_pred CCCeeEEEecCChhHHHHhhccCCeEEEEecCHHHHHHHHh
Confidence 44566788999999999999999999866666666565554
No 327
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=39.06 E-value=51 Score=31.39 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=34.4
Q ss_pred HhhhhhhcCCCcEEEecCcchHHHHHHHHHCCCCe-EEEeehHHH
Q 046950 166 SECKQIFEGLGSLVDVGGGNGTFSRIISEAFPGIK-CTVLDLPHA 209 (239)
Q Consensus 166 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dlp~v 209 (239)
..|. .+...+.|||++|..|.++...++..|--. ++++|+-++
T Consensus 37 ~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 37 KKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred HHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4443 356788999999999999999999999554 689999443
No 328
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=39.03 E-value=72 Score=25.56 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCCcEEEecCcchHH--HHHHHHHCCCCeEEEeeh--HHHHhcCCCCCCeEEEEccCCC-CCCCceEEEe
Q 046950 174 GLGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDL--PHAVANLPEADNLKYIAGDMFR-FIPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dl--p~vi~~a~~~~ri~~~~gD~f~-~~p~~D~~~l 238 (239)
..+++|=||||.=.. +..|++.. .++++++. .+-+.......++.+....+-. .+..+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlVia 76 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIA 76 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEE
Confidence 357899999986444 23445543 45656542 1112221124567776665544 3445887763
No 329
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=38.97 E-value=32 Score=26.40 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
...-=+-||+|.-....+.++|.+|+.+.--+.....++.
T Consensus 62 ~~~GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~ 101 (151)
T PTZ00215 62 ADTGILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQ 101 (151)
T ss_pred CcEEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 3445567999999999999999999877766666666554
No 330
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=38.83 E-value=1e+02 Score=26.56 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=29.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 208 (239)
+..+|+=+|||+-.+...+.+.||+.++++.|-|.
T Consensus 273 ~~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 273 SIQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred cccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcH
Confidence 46789999999998888999999998877777765
No 331
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=38.83 E-value=35 Score=26.23 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=26.4
Q ss_pred cCCCcEEEecCcchH------------H--HHHHHHHCCCCeEEEeeh
Q 046950 173 EGLGSLVDVGGGNGT------------F--SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~------------~--~~~l~~~~P~l~~~~~Dl 206 (239)
.+..++||+||+.=. . ........|+.+++++|.
T Consensus 34 ~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~ 81 (153)
T PF00549_consen 34 GGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDI 81 (153)
T ss_dssp CTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEE
T ss_pred CCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEe
Confidence 346799999999883 3 344555789999999998
No 332
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=38.67 E-value=32 Score=29.16 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.3
Q ss_pred CCcEEEecCcchHH----HHHHHHHCCCCeEEEeeh
Q 046950 175 LGSLVDVGGGNGTF----SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 175 ~~~vvDVGGG~G~~----~~~l~~~~P~l~~~~~Dl 206 (239)
+..++|||||.-.. +-.++...|..+++++..
T Consensus 309 PANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvNi 344 (412)
T KOG1447|consen 309 PANFLDVGGGVKEDQVYQAFKILTADPKVKAILVNI 344 (412)
T ss_pred CcceeeccCcccHHHHHHHhhhhccCCceeEEEEeh
Confidence 57999999998754 557888999999999887
No 333
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=38.42 E-value=33 Score=26.93 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=30.7
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
...-=+-||+|.-....+.++|.+|+.+.--+.....++.
T Consensus 58 ~~~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~ 97 (171)
T TIGR01119 58 ADLGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKE 97 (171)
T ss_pred CCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 3455567999999999999999999876666666666554
No 334
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=38.14 E-value=90 Score=23.71 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHHHHCCCCeEEEeeh---HHHHhcCCC-CCCeEEEEccCCCCCCC
Q 046950 189 SRIISEAFPGIKCTVLDL---PHAVANLPE-ADNLKYIAGDMFRFIPP 232 (239)
Q Consensus 189 ~~~l~~~~P~l~~~~~Dl---p~vi~~a~~-~~ri~~~~gD~f~~~p~ 232 (239)
...+.+.+|+-+.++.|| +..++..+. ..++++..-|+ ++.|.
T Consensus 80 i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~-s~YP~ 126 (142)
T PF07801_consen 80 ISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNF-SKYPK 126 (142)
T ss_pred HHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCC-ccCcH
Confidence 345677889999999998 566666665 47899988888 55553
No 335
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=37.35 E-value=24 Score=32.60 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=16.9
Q ss_pred HHHHHHHhhhhhhcCCCcEEEecCcch
Q 046950 160 TTFVVKSECKQIFEGLGSLVDVGGGNG 186 (239)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~vvDVGGG~G 186 (239)
.-.++ ..+++ .+...++|||||+=
T Consensus 118 ~lGv~-~~~~~--~~~~lv~DIGGGSt 141 (492)
T COG0248 118 YLGVA-STLPR--KGDGLVIDIGGGST 141 (492)
T ss_pred HHHHH-hcCCC--CCCEEEEEecCCeE
Confidence 34455 66663 66789999999964
No 336
>PRK06475 salicylate hydroxylase; Provisional
Probab=37.24 E-value=46 Score=29.46 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.1
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
++|+=||||.+-.+.+++-+.+.++++++|..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 57999999999998888888889999999973
No 337
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=36.82 E-value=79 Score=23.39 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHHhCCceeeeccCCCccccccCccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAAS 84 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s 84 (239)
+|+.|...|++..... ..|.|.++.-.
T Consensus 45 il~~L~~~glv~s~~G--~~Ggy~l~~~~ 71 (135)
T TIGR02010 45 LFAKLRKAGLVKSVRG--PGGGYQLGRPA 71 (135)
T ss_pred HHHHHHHCCceEEEeC--CCCCEeccCCH
Confidence 8999999999986531 24668776533
No 338
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=36.32 E-value=94 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=19.7
Q ss_pred HHHHHHhCCceeeeccCCCccccccCccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAAS 84 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s 84 (239)
++.-|...|+++.... .+|.|.++.-.
T Consensus 45 il~~L~~~Gli~s~~G--~~GGy~L~~~~ 71 (83)
T PF02082_consen 45 ILQKLKKAGLIESSRG--RGGGYRLARPP 71 (83)
T ss_dssp HHHHHHHTTSEEEETS--TTSEEEESS-C
T ss_pred HHHHHhhCCeeEecCC--CCCceeecCCH
Confidence 8899999999987642 24778777543
No 339
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=36.12 E-value=1.3e+02 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=27.5
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHH
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 208 (239)
....+|+=+|||+-.+-..|.+.||++ .+.|-|.
T Consensus 290 ~~~d~IiL~GGGA~ll~~~lk~~f~~~--~~~~~p~ 323 (344)
T PRK13917 290 NSFDRVIVTGGGANIFFDSLSHWYSDV--EKADESQ 323 (344)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHcCCe--EEcCChH
Confidence 456789999999999888899999975 5666665
No 340
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=36.01 E-value=63 Score=29.02 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=27.1
Q ss_pred hcCCCcEEEecCcchHH--HHHHHHHCCCCeEEEeeh
Q 046950 172 FEGLGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dl 206 (239)
.++..+|+-||+|...| +..|++++|++++.+++-
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek 53 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK 53 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeec
Confidence 34556999999996554 556777789999988887
No 341
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=35.96 E-value=65 Score=23.93 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=24.0
Q ss_pred HhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeec
Q 046950 37 ELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTK 70 (239)
Q Consensus 37 ~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~ 70 (239)
+..++-+|-+..+|.|+++ -|+-|...|++.+..
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeee
Confidence 3345545542237998887 678889999999885
No 342
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=35.91 E-value=53 Score=29.43 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=24.4
Q ss_pred cEEEecCcchHHHH--HHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSR--IISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~--~l~~~~P~l~~~~~Dlp 207 (239)
+||=||||.+.+.. .|++..|+.+++++|-.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~ 34 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC
Confidence 68999999987744 45666788899999864
No 343
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=35.82 E-value=35 Score=31.58 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHHHHHHHH----HCCCCeE
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTFSRIISE----AFPGIKC 201 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~----~~P~l~~ 201 (239)
...+ +.+| .+.+...+.|++||.|.++..+++ .||+-..
T Consensus 142 R~~v-EeCD-~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~i 184 (493)
T cd06060 142 RFYV-EECD-YLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKASL 184 (493)
T ss_pred HHHH-HhCc-ccccEEEEEecCCcccchHHHHHHHHHHhcCccce
Confidence 4567 8887 578889999999999988776655 5887543
No 344
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=35.81 E-value=27 Score=28.79 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVA 211 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~ 211 (239)
+.++++|.-=|+|.....+++++|+++..++|..++..
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~ 80 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVAR 80 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHH
Confidence 46799999999999999999999999999999966544
No 345
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=35.80 E-value=86 Score=22.38 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=35.1
Q ss_pred HHHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCC--CccccccCccccccccC
Q 046950 35 AIELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNG--EEEAYGLTAASTLLIKD 90 (239)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~~ 90 (239)
..++.++..|... ++.+..+ +++-|...|++++..... ..-.+.+|+.++.+...
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS 98 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 4445566666654 4666665 788999999999864210 12257888888755543
No 346
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=35.64 E-value=39 Score=23.51 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=33.5
Q ss_pred HHHHhChhhHhhhC-CCCCCHHH-----------HH-------------HHHHhCCce-eeeccCCCccccccCcccccc
Q 046950 34 CAIELGIADIIHSH-GRAITLSE-----------LM-------------RLLVHSGCF-KKTKVNGEEEAYGLTAASTLL 87 (239)
Q Consensus 34 ~a~~lglfd~L~~~-~~~~t~~e-----------lL-------------r~L~~~g~l-~~~~~~~~~~~y~~t~~s~~l 87 (239)
.=++..++..|... +.+.+++| ++ +.|+.+|++ .+... .+...|++|+.++.+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-~g~k~Y~lT~~G~~~ 86 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-GGFKYYRLTEKGKRI 86 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-CCeeEEEeChhhhhH
Confidence 34566677777665 45677776 22 367889999 33321 123468899877644
Q ss_pred c
Q 046950 88 I 88 (239)
Q Consensus 88 ~ 88 (239)
+
T Consensus 87 ~ 87 (90)
T PF07381_consen 87 A 87 (90)
T ss_pred H
Confidence 3
No 347
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=34.83 E-value=39 Score=26.52 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
+....-=+-||+|.-....+.++|.+|+.+.--+.....++.
T Consensus 56 g~~d~GIliCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~ 97 (171)
T PRK08622 56 GEADLGVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKE 97 (171)
T ss_pred CCCcEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 333455567999999999999999999866666666666554
No 348
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=34.64 E-value=1.1e+02 Score=25.44 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=27.5
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||..-.+.++.-+.++++++++|..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~ 57 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERK 57 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecC
Confidence 35888999999998888888899999999974
No 349
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=34.35 E-value=71 Score=27.18 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=45.8
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCCCCC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFRFIP 231 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~~~p 231 (239)
+...-.-||+|.-.|.+...|.++ +++++.+|-....+..-..++|+++..|=|+=.|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRP 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCccccc
Confidence 445678999999999999999997 8899999997766655556778887777666333
No 350
>PRK06847 hypothetical protein; Provisional
Probab=33.98 E-value=59 Score=28.24 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=26.4
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
...|+=||||.+-.+.++.-+.-+++++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 45799999999888777766666889999986
No 351
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=33.92 E-value=53 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=16.7
Q ss_pred ecCcchHH-HHHHHHHCCCCeEEEeehHH
Q 046950 181 VGGGNGTF-SRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 181 VGGG~G~~-~~~l~~~~P~l~~~~~Dlp~ 208 (239)
||+|.+-+ +...+++. +.+++++|..+
T Consensus 2 iGaG~sGl~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp ES-SHHHHHHHHHHHHT-TSEEEEEESSS
T ss_pred EeeCHHHHHHHHHHHHC-CCcEEEEecCc
Confidence 78885554 44344443 77999999743
No 352
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=33.91 E-value=53 Score=29.78 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=26.8
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
+|+=||||.|-+..+........+++++|..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5888999999998888877789999999963
No 353
>PRK08163 salicylate hydroxylase; Provisional
Probab=33.65 E-value=58 Score=28.57 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=28.6
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
...|+=||||.+-.+.+++-+..+++++++|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeC
Confidence 357999999999998888888889999999973
No 354
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=33.52 E-value=56 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=25.7
Q ss_pred CcEEEecCc-chHHHH-HHHHHCCCCeEEEeehHH
Q 046950 176 GSLVDVGGG-NGTFSR-IISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 176 ~~vvDVGGG-~G~~~~-~l~~~~P~l~~~~~Dlp~ 208 (239)
.-||-|||| .|..+. .|++..|..+++++|...
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 469999999 666655 556667989999999864
No 355
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=33.50 E-value=24 Score=23.79 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=29.0
Q ss_pred HHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccC-CC--ccccccCcccc
Q 046950 36 IELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVN-GE--EEAYGLTAAST 85 (239)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~-~~--~~~y~~t~~s~ 85 (239)
++++|...|... +.++..+ .|+.|...|+++....- ++ .-.|++|+.++
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 355566666553 3445544 78999999999977421 00 11377777765
No 356
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=33.49 E-value=33 Score=26.03 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 183 GGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 183 GG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
||+|.-....+.++|.+|+.+.--+...+.++.
T Consensus 63 CGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 95 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMIAAEVSDERSAYMTRG 95 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 788888888899999999877766666666554
No 357
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=33.28 E-value=97 Score=25.78 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=35.3
Q ss_pred CCcEEEecCc-chHHHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCCCCCC-ceEEE
Q 046950 175 LGSLVDVGGG-NGTFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFRFIPP-ADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG-~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~~~p~-~D~~~ 237 (239)
.+.+|=+|+= +|.+.+..+..+- +++++|. |++.+.. .++|.|+ .+..+.+. +|+|+
T Consensus 42 ~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll--~~~i~F~--~~~~~~~~~~DlII 101 (252)
T PF06690_consen 42 FKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL--NENIKFM--EFRNGLEGNPDLII 101 (252)
T ss_pred cceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh--cCCCcee--eccCCCCCCCCEEE
Confidence 3478888853 4666555555433 8999999 5554443 5678887 33334444 78775
No 358
>PRK07236 hypothetical protein; Provisional
Probab=32.88 E-value=63 Score=28.37 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.5
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..+|+=||||.+-.+.++.-+..+++++++|..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 457999999998887777776678999999973
No 359
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=32.79 E-value=61 Score=28.40 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.0
Q ss_pred CcEEEecCcchHHH--HHHHHHCCCCeEEEeeh
Q 046950 176 GSLVDVGGGNGTFS--RIISEAFPGIKCTVLDL 206 (239)
Q Consensus 176 ~~vvDVGGG~G~~~--~~l~~~~P~l~~~~~Dl 206 (239)
+++|=||||.+.+. ..+.+..|+.++++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~ 35 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITA 35 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC
Confidence 47999999998764 46777789999988875
No 360
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.48 E-value=60 Score=29.13 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=23.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
..++||=||||.|....+..-..++.+++++|-
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~ 41 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISP 41 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcC
Confidence 356899999998886553322334678999985
No 361
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=32.37 E-value=58 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=26.0
Q ss_pred CCCcEEEecCcchHH----HHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTF----SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~----~~~l~~~~P~l~~~~~Dl 206 (239)
.+..++|||||.-.- +..+....|+++++++++
T Consensus 317 ~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNI 353 (422)
T PLN00124 317 SPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNI 353 (422)
T ss_pred CcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 467999999997654 456667789999988866
No 362
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=32.36 E-value=47 Score=22.44 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCceeeeccCC--CccccccCccccccc
Q 046950 53 LSELMRLLVHSGCFKKTKVNG--EEEAYGLTAASTLLI 88 (239)
Q Consensus 53 ~~elLr~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~ 88 (239)
+...++-|...|++++..... ....|.+|+.+..+.
T Consensus 41 i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 41 VTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 333899999999999774100 012455666555433
No 363
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=32.21 E-value=39 Score=25.95 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHhCCceeeeccCCCccccccCccccccccC
Q 046950 49 RAITLSELMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLIKD 90 (239)
Q Consensus 49 ~~~t~~elLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~ 90 (239)
.|-|+.+.++-|...|+++... .+.+.+|+.++.....
T Consensus 37 sp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a~~ 74 (154)
T COG1321 37 SPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKAKE 74 (154)
T ss_pred CcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHHHH
Confidence 4667788999999999999986 6889999988765543
No 364
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=31.70 E-value=23 Score=28.97 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCcEEEecCcchHHHHHHHH
Q 046950 174 GLGSLVDVGGGNGTFSRIISE 194 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~ 194 (239)
.+.+++|+|.|.|.....++-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p 132 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAP 132 (288)
T ss_pred CCeeEEeccCCCcchhhhhcc
Confidence 357999999999987655443
No 365
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=31.12 E-value=71 Score=28.42 Aligned_cols=37 Identities=22% Similarity=0.537 Sum_probs=26.6
Q ss_pred HHHHHhhhhhhcCCCcEEEecCcch-----HHHHHHHHHCCCCe
Q 046950 162 FVVKSECKQIFEGLGSLVDVGGGNG-----TFSRIISEAFPGIK 200 (239)
Q Consensus 162 ~~l~~~~~~~~~~~~~vvDVGGG~G-----~~~~~l~~~~P~l~ 200 (239)
..+ +.+| .+.+.-.+-.+|||+| ..+..+...||+..
T Consensus 91 ~~~-E~cd-~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 91 KAA-EKCD-SLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred HHH-hhCc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 345 6666 4667788999999997 44556777888763
No 366
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=31.07 E-value=64 Score=24.05 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHhCCceeeeccCCCccccccCccccccc
Q 046950 50 AITLSELMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLI 88 (239)
Q Consensus 50 ~~t~~elLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 88 (239)
+-|+...++.|...|++.+.. .+.|.+|+.++.+.
T Consensus 36 ~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 36 PSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG 70 (142)
T ss_pred hhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence 334444889999999999764 46799999887544
No 367
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=30.87 E-value=39 Score=25.64 Aligned_cols=33 Identities=6% Similarity=0.051 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 183 GGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 183 GG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
||+|.-..-.+.++|.+|+.+.--+.....++.
T Consensus 62 CGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~ 94 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEVSDERSAYMTRG 94 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 788888888899999999866666655555553
No 368
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=30.87 E-value=83 Score=18.38 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCcee
Q 046950 36 IELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFK 67 (239)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~ 67 (239)
.+..|+..|.++ +.+|..| .++-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 356678888775 4577766 677778888764
No 369
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=30.65 E-value=35 Score=21.81 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHhChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeec
Q 046950 36 IELGIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTK 70 (239)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~ 70 (239)
.|..++..|-.. ++.|+++ .|+-|...|++.+..
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 344555555433 5667666 899999999999985
No 370
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=30.35 E-value=84 Score=26.77 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCcEEEecCcc-h-HHHHHHHHHCCCCeEEEeeh-HHHHhcCC
Q 046950 175 LGSLVDVGGGN-G-TFSRIISEAFPGIKCTVLDL-PHAVANLP 214 (239)
Q Consensus 175 ~~~vvDVGGG~-G-~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~ 214 (239)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR 48 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 35788888775 3 33444544433347889998 44444443
No 371
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.33 E-value=76 Score=24.66 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHhChhhHhhhCCCCCCHHH-------------------HHHHHHhCCceeeec
Q 046950 35 AIELGIADIIHSHGRAITLSE-------------------LMRLLVHSGCFKKTK 70 (239)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~e-------------------lLr~L~~~g~l~~~~ 70 (239)
-.+.-|++.|...+++.|+++ .|+.|...|++.+-.
T Consensus 26 ~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 26 PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 444555666654445666665 788999999999875
No 372
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=30.24 E-value=73 Score=28.05 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=24.8
Q ss_pred cEEEecCcchHH--HHHHHHHCCCCeEEEeehHH
Q 046950 177 SLVDVGGGNGTF--SRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 177 ~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dlp~ 208 (239)
.|+=||||.--. +..|++++|..+++++|...
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 478899995433 55777788999999999854
No 373
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=30.15 E-value=69 Score=28.33 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=24.7
Q ss_pred CCcEEEecCcchHH--HHHHHHHCCCCeEEEeeh
Q 046950 175 LGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 175 ~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dl 206 (239)
.++||=||||.+-+ +..|.+..++.++++++-
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~ 36 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSD 36 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 45799999998766 456777778888888865
No 374
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=29.42 E-value=84 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=26.1
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchH-----HHHHHHHHCCCC
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGT-----FSRIISEAFPGI 199 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~-----~~~~l~~~~P~l 199 (239)
...+ +.+| .+.+...+.++|||+|. ++..+...||+.
T Consensus 80 r~~~-E~cD-~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 80 RKEA-EECD-SLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred HHHH-HhCC-CccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 3445 6666 35677889999998883 456777788853
No 375
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=29.21 E-value=71 Score=28.10 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCCcEEEecCcchHH--HHHHHHHCCCCeEEEeehH
Q 046950 174 GLGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dlp 207 (239)
..-.||-||||+|.. +..+.++.|.=.+.++|-.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 456799999999987 4567888888777766653
No 376
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=29.11 E-value=80 Score=30.49 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
...+|+=||||.+-++.+++-+...++++++|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 456899999999999998888888999999997
No 377
>PRK09126 hypothetical protein; Provisional
Probab=29.10 E-value=72 Score=27.90 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=26.4
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.|+=||||.+-.+.++.-+-.+++++++|..
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 5888999999988887777778999999973
No 378
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=28.78 E-value=72 Score=28.41 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCCcEEEecCcchHH----HHHHHHHCCCCeEEEeeh
Q 046950 174 GLGSLVDVGGGNGTF----SRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~----~~~l~~~~P~l~~~~~Dl 206 (239)
.+..++|||||.-.- +..+....|+.+++.+.+
T Consensus 281 ~PANFLDvGGgA~~e~v~~a~~~il~d~~vk~IfVNI 317 (387)
T COG0045 281 KPANFLDVGGGATAERVKEAFKLILSDPNVKAIFVNI 317 (387)
T ss_pred CCcceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEE
Confidence 468999999998654 445566789999988887
No 379
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=28.43 E-value=67 Score=27.13 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=23.1
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.|+=||||.+-.+.++.-+.-.++++++|..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4888999988777776666667899999983
No 380
>PRK06753 hypothetical protein; Provisional
Probab=28.35 E-value=77 Score=27.51 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=25.9
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
+|+=||||.+-.+.++.-+..+++++++|..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 5888999999888877777778999999973
No 381
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=28.03 E-value=1.4e+02 Score=24.86 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=25.3
Q ss_pred hcCCCcEEEecCcch-------------HHHHHHH---HHCCCCeEEEeeh--HHHHhcCC
Q 046950 172 FEGLGSLVDVGGGNG-------------TFSRIIS---EAFPGIKCTVLDL--PHAVANLP 214 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G-------------~~~~~l~---~~~P~l~~~~~Dl--p~vi~~a~ 214 (239)
......++||||++. .-...+. +...++. +.+|. |+|++.+-
T Consensus 34 ~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL 93 (258)
T cd00423 34 VEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAAL 93 (258)
T ss_pred HHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHH
Confidence 355679999999998 2222222 2222333 67887 77777654
No 382
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=27.96 E-value=80 Score=26.52 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=29.7
Q ss_pred cEEEecCcc--hHHHHHHHHHCCCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCCCCCCceEEEe
Q 046950 177 SLVDVGGGN--GTFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMFRFIPPADAFLF 238 (239)
Q Consensus 177 ~vvDVGGG~--G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~~~p~~D~~~l 238 (239)
+|.=||.|. |.++..|+++ +.+++++|. ++.++.+.....+.....+. +....+|++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEE
Confidence 355577664 3445555543 457888997 45555443222222111221 22334788776
No 383
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=27.87 E-value=81 Score=27.49 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=27.6
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||.+-.+.++.-...+++++++|..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 36899999999998888887889999999974
No 384
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=27.81 E-value=99 Score=27.18 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=30.9
Q ss_pred hcCCCcEEEecCcc-hHHHHHHHHHCCCCeEEEeeh-HHHHhcC
Q 046950 172 FEGLGSLVDVGGGN-GTFSRIISEAFPGIKCTVLDL-PHAVANL 213 (239)
Q Consensus 172 ~~~~~~vvDVGGG~-G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a 213 (239)
.....+|+.+|+|. |..+..++++..--++++.|. ++..+.+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~ 225 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA 225 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 34457899999988 999999999987545777765 4444433
No 385
>PHA00738 putative HTH transcription regulator
Probab=27.62 E-value=93 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCceeeec
Q 046950 53 LSELMRLLVHSGCFKKTK 70 (239)
Q Consensus 53 ~~elLr~L~~~g~l~~~~ 70 (239)
++.-|+.|...|+|....
T Consensus 43 VS~HLKvLreAGLV~srK 60 (108)
T PHA00738 43 VLRHLKILNEQGYIELYK 60 (108)
T ss_pred HHHHHHHHHHCCceEEEE
Confidence 333789999999999886
No 386
>PRK10637 cysG siroheme synthase; Provisional
Probab=27.51 E-value=1e+02 Score=28.10 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=40.1
Q ss_pred CCCcEEEecCcchHH--HHHHHHHCCCCeEEEeehHHHHhcCCCCCCeEEEEccCCC-CCCCceEEEe
Q 046950 174 GLGSLVDVGGGNGTF--SRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMFR-FIPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dlp~vi~~a~~~~ri~~~~gD~f~-~~p~~D~~~l 238 (239)
..++||=||||.=.. +..|++.-.+++++.-+..+-+.......+|+++..+|-. .+..+++++.
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~ 78 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIA 78 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEE
Confidence 467899999998766 4456665555555444442222222336789999888754 3545777653
No 387
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=27.50 E-value=30 Score=29.20 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=10.3
Q ss_pred cCCCcEEEecCcc
Q 046950 173 EGLGSLVDVGGGN 185 (239)
Q Consensus 173 ~~~~~vvDVGGG~ 185 (239)
.+...++|||||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 3456899999995
No 388
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.48 E-value=98 Score=23.29 Aligned_cols=15 Identities=7% Similarity=0.286 Sum_probs=13.0
Q ss_pred HHHHHHhCCceeeec
Q 046950 56 LMRLLVHSGCFKKTK 70 (239)
Q Consensus 56 lLr~L~~~g~l~~~~ 70 (239)
.|+.|...|++.+..
T Consensus 58 ~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 58 VLNQFDDAGIVTRHN 72 (148)
T ss_pred HHHHHHHCCCEEEEE
Confidence 788999999998764
No 389
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=27.20 E-value=1e+02 Score=27.40 Aligned_cols=38 Identities=26% Similarity=0.562 Sum_probs=25.8
Q ss_pred HHHHHHhhhhhhcCCCcEEEecCcchHH-----HHHHHHHCCCCe
Q 046950 161 TFVVKSECKQIFEGLGSLVDVGGGNGTF-----SRIISEAFPGIK 200 (239)
Q Consensus 161 ~~~l~~~~~~~~~~~~~vvDVGGG~G~~-----~~~l~~~~P~l~ 200 (239)
+..+ +.+| .+.+...+-++|||+|.- +..+...||+..
T Consensus 80 r~~~-E~cD-~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 80 RKQV-EKCD-SLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred HHHH-HhCC-CcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 4456 7777 466778899999987632 234556788654
No 390
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.19 E-value=7.7 Score=30.35 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCcEEEecCcc-hHHHHHHHHHCCCCeEEEeehH-HHHhcCC---------CCCCeEEEEccCCCCCC-----CceEEEe
Q 046950 175 LGSLVDVGGGN-GTFSRIISEAFPGIKCTVLDLP-HAVANLP---------EADNLKYIAGDMFRFIP-----PADAFLF 238 (239)
Q Consensus 175 ~~~vvDVGGG~-G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~---------~~~ri~~~~gD~f~~~p-----~~D~~~l 238 (239)
.+.|+++|||- |..+..++.+-|.-.+.+-|-. ..+++.+ ...++..+..+..+.+. -||+|+.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999995 4556677777788888888873 3444332 14566666666655321 2777763
No 391
>PRK07045 putative monooxygenase; Reviewed
Probab=27.06 E-value=81 Score=27.64 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=27.4
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
..|+=||||.+-.+.++.-+..+++++++|.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 4699999999999888888888999999997
No 392
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.04 E-value=91 Score=21.85 Aligned_cols=48 Identities=35% Similarity=0.510 Sum_probs=29.1
Q ss_pred EEecCcchHHHHHHHHHC--CCCeEEEeeh-HHHHhcCCCCCCeEEEEccCCCC
Q 046950 179 VDVGGGNGTFSRIISEAF--PGIKCTVLDL-PHAVANLPEADNLKYIAGDMFRF 229 (239)
Q Consensus 179 vDVGGG~G~~~~~l~~~~--P~l~~~~~Dl-p~vi~~a~~~~ri~~~~gD~f~~ 229 (239)
|=+|+| .++..+++.. -+.+++++|. |+.++.+++ ..+.++.||..++
T Consensus 2 vI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~ 52 (116)
T PF02254_consen 2 VIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDP 52 (116)
T ss_dssp EEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSH
T ss_pred EEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhh
Confidence 334544 5555444432 4467999999 566666653 3388999999873
No 393
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=26.76 E-value=91 Score=25.64 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=24.9
Q ss_pred EEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
|+=||||.+-.+.++.-+...++++++|..
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 788999998887776666678999999984
No 394
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=26.72 E-value=77 Score=19.43 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=23.0
Q ss_pred HhChhhHhhhCCCC-CCHHH--------------HHHHHHhCCceeeec
Q 046950 37 ELGIADIIHSHGRA-ITLSE--------------LMRLLVHSGCFKKTK 70 (239)
Q Consensus 37 ~lglfd~L~~~~~~-~t~~e--------------lLr~L~~~g~l~~~~ 70 (239)
++.++..|...+++ +++.+ +++.|...|++++..
T Consensus 7 q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 34455556554322 56655 889999999999885
No 395
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=26.62 E-value=1.5e+02 Score=25.42 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=33.2
Q ss_pred cEEEecCcchHHHHHHHHHC---CCCeEEEeehHH-HHhcCCCCCCeEEEEccCCC
Q 046950 177 SLVDVGGGNGTFSRIISEAF---PGIKCTVLDLPH-AVANLPEADNLKYIAGDMFR 228 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~---P~l~~~~~Dlp~-vi~~a~~~~ri~~~~gD~f~ 228 (239)
+|+ |=||+|..+..|++++ .+.+++++|+.. .........+++++.+|+.+
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~ 57 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITI 57 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCC
Confidence 344 5567888888887765 346788888733 22222224569999999973
No 396
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=26.60 E-value=46 Score=25.29 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=25.2
Q ss_pred CcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 183 GGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 183 GG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
||+|.-....+.++|.+|+.+.--+...+.++.
T Consensus 63 CGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 95 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMVAAEVSDERSAYMTRG 95 (142)
T ss_pred cCCChhhhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 788888888899999999866666665555553
No 397
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=26.53 E-value=88 Score=27.36 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=26.7
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.|+=||||.+-.+.+++-+..+++++++|..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 4888999999998888777788999999963
No 398
>PRK07588 hypothetical protein; Provisional
Probab=26.45 E-value=80 Score=27.69 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=25.2
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.|+=||||.+-.+.++.-+...++++++|.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 588899999988877776667889999986
No 399
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=25.89 E-value=1.4e+02 Score=25.41 Aligned_cols=62 Identities=18% Similarity=0.057 Sum_probs=36.5
Q ss_pred CcEEEecCc--chHHHHHHHHHCCCCeEEEeehH-HHHhcCCCCCCeEEE-EccC-CCCCCCceEEEe
Q 046950 176 GSLVDVGGG--NGTFSRIISEAFPGIKCTVLDLP-HAVANLPEADNLKYI-AGDM-FRFIPPADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG--~G~~~~~l~~~~P~l~~~~~Dlp-~vi~~a~~~~ri~~~-~gD~-f~~~p~~D~~~l 238 (239)
.+|+=||.| .|.++..+.++.+..+++..|.. ..++.+.+. .+... .-|. ......+|+|++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEE
Confidence 355666655 46778888888888888999984 344444321 12222 2233 334445777775
No 400
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=25.75 E-value=88 Score=27.65 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=26.5
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
..|+=||||.+-.+.+++-..-+++++++|.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence 3699999999988887777667899999997
No 401
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=25.42 E-value=2e+02 Score=23.75 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=43.4
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHC-CCCeEEEeeh-HH----HHhcCCCCCCeEEEEccCCCC------CCCceEEE
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAF-PGIKCTVLDL-PH----AVANLPEADNLKYIAGDMFRF------IPPADAFL 237 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~~~Dl-p~----vi~~a~~~~ri~~~~gD~f~~------~p~~D~~~ 237 (239)
+....+||-+|.++|+...-+.--- |+=.+..++. |. .+..|+...+|-.+-.|...| ++..|+++
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEE
Confidence 5667899999999999988887754 3555666666 32 344445578888888888775 22378776
No 402
>PRK07538 hypothetical protein; Provisional
Probab=25.35 E-value=90 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.6
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.|+=||||.+-.+.++.-+.-+++++++|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAA 32 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcC
Confidence 5888999999988877666668899999973
No 403
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=25.34 E-value=26 Score=31.72 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=41.3
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-HHHHhcCCC--------CCCeEEEEc---cCC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAG---DMF 227 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p~vi~~a~~--------~~ri~~~~g---D~f 227 (239)
+.....|+|+=||.|-+++-++++. ++++..|+ |+.++.... ..+|+.... ||+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 5667899999999999999998886 89999999 777664331 334666555 466
No 404
>PLN02206 UDP-glucuronate decarboxylase
Probab=25.29 E-value=1.8e+02 Score=26.33 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCcEEEecCcchHHHHHHHHHC--CCCeEEEeehH-----HHHhcCCCCCCeEEEEccCCCCCCC-ceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAF--PGIKCTVLDLP-----HAVANLPEADNLKYIAGDMFRFIPP-ADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~--P~l~~~~~Dlp-----~vi~~a~~~~ri~~~~gD~f~~~p~-~D~~~ 237 (239)
..+|+= =||+|..+..|+++. -+.+++++|.. +.+.......+++++.+|..++.-. +|+|+
T Consensus 119 ~~kILV-TGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~Vi 188 (442)
T PLN02206 119 GLRVVV-TGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIY 188 (442)
T ss_pred CCEEEE-ECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEE
Confidence 356664 457777777666644 24567777742 1111111245789999998876433 67765
No 405
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=25.21 E-value=1e+02 Score=27.83 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.3
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehHH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 208 (239)
.+|+-||||-+-.+.++.-.--.++++|++-.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 479999999999999999888999999999843
No 406
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=25.19 E-value=37 Score=27.64 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=9.7
Q ss_pred CCcEEEecCcch
Q 046950 175 LGSLVDVGGGNG 186 (239)
Q Consensus 175 ~~~vvDVGGG~G 186 (239)
..-|||||||+-
T Consensus 141 dg~VVDiGGGTT 152 (277)
T COG4820 141 DGGVVDIGGGTT 152 (277)
T ss_pred CCcEEEeCCCcc
Confidence 457999999964
No 407
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=25.14 E-value=95 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=26.6
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.|+=||||.+-.+.++.-....++++++|..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCC
Confidence 5899999999998887777778999999973
No 408
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=25.01 E-value=1.1e+02 Score=24.35 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=29.0
Q ss_pred ChhhHhhhCCCCCCHHH--------------HHHHHHhCCceeeeccCCCcc----ccccCccccccc
Q 046950 39 GIADIIHSHGRAITLSE--------------LMRLLVHSGCFKKTKVNGEEE----AYGLTAASTLLI 88 (239)
Q Consensus 39 glfd~L~~~~~~~t~~e--------------lLr~L~~~g~l~~~~~~~~~~----~y~~t~~s~~l~ 88 (239)
.|+..|... ++.|..+ .|+.|...|++++.....+.| .|.+|+.++.+.
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 455556544 4566655 788999999998763100012 266676665433
No 409
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=24.94 E-value=95 Score=28.10 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
|+=||+|.|-+..++..+.-+.+++++|.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~~v~lie~ 31 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGASVAMVER 31 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 78899999888888887778889999885
No 410
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=24.91 E-value=83 Score=23.29 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhCCceeeeccCCCccccccCc
Q 046950 52 TLSELMRLLVHSGCFKKTKVNGEEEAYGLTA 82 (239)
Q Consensus 52 t~~elLr~L~~~g~l~~~~~~~~~~~y~~t~ 82 (239)
|+..+|+-|+..|+++.... ++.|.-+|
T Consensus 40 TV~TLl~RL~KKg~l~~~kd---gr~~~y~p 67 (123)
T COG3682 40 TVKTLLNRLVKKGLLTRKKD---GRAFRYSP 67 (123)
T ss_pred HHHHHHHHHHhccchhhhhc---CCeeeeec
Confidence 44449999999999998763 45666665
No 411
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=24.90 E-value=96 Score=27.96 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCcEEEecCcchHHHH--HHHHHCCCCeEEEeeh
Q 046950 175 LGSLVDVGGGNGTFSR--IISEAFPGIKCTVLDL 206 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~--~l~~~~P~l~~~~~Dl 206 (239)
.++||=||||-|.... .|.+..|+.+++++|.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~ 36 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDR 36 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeC
Confidence 4689999999998754 3333334678899998
No 412
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=24.80 E-value=1.7e+02 Score=24.85 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=28.3
Q ss_pred ChhhhcccCchHHHHHHHHHhhchhhhHHHHHHHhhhhhhcCCCcEEEecCcchHH
Q 046950 133 KFWEFMNQNPAINQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTF 188 (239)
Q Consensus 133 ~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~ 188 (239)
+.++|+.+.|+..+-+.+.. .....|+ +.|.. -.+....+-|||-.|+.
T Consensus 207 ~V~dYv~~~~e~~ef~~~l~-----~~l~~~L-P~y~~-egks~lTIaIGCTGGqH 255 (286)
T COG1660 207 PVADYVMSQPEVEEFYEKLR-----DLLEFWL-PRYEK-EGKSYLTIAIGCTGGQH 255 (286)
T ss_pred hHHHHHHcChHHHHHHHHHH-----HHHHHHh-HHHHh-cCCeEEEEEEccCCCcc
Confidence 55677777776655444332 2224456 66651 12345678899988864
No 413
>PRK05868 hypothetical protein; Validated
Probab=24.78 E-value=94 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=25.1
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
..|+=||||.+-.+.++.-+..+++++++|.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 3688899999988887766666888888886
No 414
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=24.64 E-value=1.8e+02 Score=17.90 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=18.2
Q ss_pred HHHHHHhCCceeeeccCCCccccccCc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTA 82 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~ 82 (239)
+++.|...|++.... .+.|.+++
T Consensus 45 ~l~~L~~~g~i~~~~----~~~~~l~~ 67 (67)
T cd00092 45 TLKELEEEGLISRRG----RGKYRVNP 67 (67)
T ss_pred HHHHHHHCCCEEecC----CCeEEeCC
Confidence 788999999999874 36777654
No 415
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.58 E-value=2e+02 Score=23.56 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=41.8
Q ss_pred hcCCCcEEEecCcchHHHHHHHHHCCCCeEEEeeh-H----HHHhcCCCCCCeEEEEccCCCC
Q 046950 172 FEGLGSLVDVGGGNGTFSRIISEAFPGIKCTVLDL-P----HAVANLPEADNLKYIAGDMFRF 229 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl-p----~vi~~a~~~~ri~~~~gD~f~~ 229 (239)
+....+||-+|..+|+-..-+.---++=++..++. | +.++.+.+..+|-.+-+|.-.|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P 136 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKP 136 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCc
Confidence 56788999999999999988888777545555555 2 2344555566777777777665
No 416
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=24.53 E-value=1.1e+02 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=25.9
Q ss_pred cEEEecCcchHH--HHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTF--SRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~--~~~l~~~~P~l~~~~~Dlp 207 (239)
+++=||||---+ +..|.++.|++.++++|-.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~ 34 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 688899997666 4488999999999999973
No 417
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.26 E-value=2.9e+02 Score=24.08 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=54.9
Q ss_pred ccchhhhhHHhhcCCCCChhHHhhC-CChhhhc-ccCchHHHHHHHHHhhchh---hhHHHHHHHhhhhhhcCCCcEEEe
Q 046950 107 FVAPFQSLSSWFKGTEITLWETVHG-IKFWEFM-NQNPAINQRFNEAMASDSE---IMTTFVVKSECKQIFEGLGSLVDV 181 (239)
Q Consensus 107 ~~~~~~~l~~~l~~~~~~~f~~~~g-~~~~e~~-~~~~~~~~~f~~~m~~~~~---~~~~~~l~~~~~~~~~~~~~vvDV 181 (239)
.+.....|.+.+|... -||-.-|. ..+.|.+ .++|...+...++..+... +.....+ ..|. +|-++.+|||.
T Consensus 68 hyeil~sltdtvrped-dpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~i-rryg-gfygptcvvdf 144 (500)
T COG4883 68 HYEILTSLTDTVRPED-DPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESI-RRYG-GFYGPTCVVDF 144 (500)
T ss_pred HHHHHHhhhcccCCCC-CchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHH-HHhc-CccCCceEEEE
Confidence 3455667777777665 56755444 3445544 3466665555555544332 2233445 5555 57789999996
Q ss_pred c---CcchHHHHHHHHHCCCCeEEEeehHHHHhc
Q 046950 182 G---GGNGTFSRIISEAFPGIKCTVLDLPHAVAN 212 (239)
Q Consensus 182 G---GG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~ 212 (239)
. |.+......+++. .|+|.-..+
T Consensus 145 al~pgstsnvvnrilk~--------~dip~ehkq 170 (500)
T COG4883 145 ALVPGSTSNVVNRILKK--------MDIPVEHKQ 170 (500)
T ss_pred EecCCchHHHHHHHHHh--------cCCcHHHHH
Confidence 5 5555555666665 566654443
No 418
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.25 E-value=1e+02 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=24.0
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.||=||||.|-+..+...+....+++++|.
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEE 34 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 488899998888777666667888888885
No 419
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.25 E-value=78 Score=20.36 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=13.6
Q ss_pred HHHHHHhCCceeeec
Q 046950 56 LMRLLVHSGCFKKTK 70 (239)
Q Consensus 56 lLr~L~~~g~l~~~~ 70 (239)
+|..|..+|.+.+..
T Consensus 34 mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 34 MLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHCCTSCEEEE
T ss_pred HHHHHHHCCcEEEec
Confidence 899999999999885
No 420
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=24.15 E-value=96 Score=26.87 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=21.6
Q ss_pred cEEEecCcchHHHHH--HHHH-CCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRI--ISEA-FPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~--l~~~-~P~l~~~~~Dl 206 (239)
+||=||||.|....+ +.++ .|+.+++++|.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~ 33 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINP 33 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECC
Confidence 478899999875432 3222 57889999986
No 421
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=23.88 E-value=99 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=25.7
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.|+=||||.+-.+.+++-+.-.++++++|.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 589999999988887776667899999996
No 422
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=23.80 E-value=1.1e+02 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=19.0
Q ss_pred cEEEecCcch-HHHH-HHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNG-TFSR-IISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G-~~~~-~l~~~~P~l~~~~~Dl 206 (239)
+|+=||||-. ..+. .|.+..+..++++++-
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa 33 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEA 33 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEc
Confidence 6888999954 4444 3444335677777765
No 423
>PRK06370 mercuric reductase; Validated
Probab=23.77 E-value=1.1e+02 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=25.4
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.||=||||.|-+..++..+.-..+++++|.
T Consensus 7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~ 36 (463)
T PRK06370 7 DAIVIGAGQAGPPLAARAAGLGMKVALIER 36 (463)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 488999999888888777767889999985
No 424
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=23.52 E-value=1.1e+02 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.7
Q ss_pred HHHHHHhCCceeeeccCCCccccccCcc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAA 83 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~ 83 (239)
.+..|...|++.+... ....|.+|+.
T Consensus 177 ~L~~Le~~GlI~r~~~--r~~~~~lT~~ 202 (203)
T TIGR01884 177 HLRELEKKGLVEQKGR--KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHCCCEEEEcC--CccEEEeCCC
Confidence 7888889999998841 1345777764
No 425
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=23.48 E-value=1.1e+02 Score=28.26 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEee
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLD 205 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~D 205 (239)
...|+=||||.+-++.++..+..++++++++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 4689999999999988888888899998886
No 426
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=23.46 E-value=1.1e+02 Score=26.39 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=25.2
Q ss_pred EEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
|+=||+|.+-.+.++.-+-..++++++|..
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 677999999888877777778999999984
No 427
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=23.44 E-value=35 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=30.5
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehHHHHhcCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPHAVANLPE 215 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~vi~~a~~ 215 (239)
...-=+-||+|.-....+.++|.+|+.+.--+.....++.
T Consensus 59 ~~~GIliCGtGiG~siaANK~~GiRAA~~~d~~sA~~ar~ 98 (148)
T TIGR02133 59 ADLGIVIGGSGNGEAIAANKVKGARAALAWDTASAGRARL 98 (148)
T ss_pred CceEEEEcCCChhheeeecccCCeEEEEECCHHHHHHHHH
Confidence 3445567999999999999999999877666666666554
No 428
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=23.42 E-value=1e+02 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=27.0
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||.+-.+.++.-+...++++++|..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECC
Confidence 36899999999998887777778999999973
No 429
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=23.26 E-value=1.3e+02 Score=25.49 Aligned_cols=36 Identities=31% Similarity=0.581 Sum_probs=29.4
Q ss_pred cCCCcEEEecCcchHHHHHHHHHCCC----CeEEEeehHH
Q 046950 173 EGLGSLVDVGGGNGTFSRIISEAFPG----IKCTVLDLPH 208 (239)
Q Consensus 173 ~~~~~vvDVGGG~G~~~~~l~~~~P~----l~~~~~Dlp~ 208 (239)
.+..++||+|.|+-.=.+.|+.++-+ ++.+-+|...
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a 116 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSA 116 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccH
Confidence 46889999999999888888877766 7888888844
No 430
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=23.24 E-value=1e+02 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhCCceeeeccCCCcccccc
Q 046950 52 TLSELMRLLVHSGCFKKTKVNGEEEAYGL 80 (239)
Q Consensus 52 t~~elLr~L~~~g~l~~~~~~~~~~~y~~ 80 (239)
++...++.|...|++... .+.|..
T Consensus 24 tv~~~l~~L~~~g~l~~~-----~~~~~i 47 (48)
T smart00419 24 TVSRTLKRLEKEGLISRE-----GGRIVI 47 (48)
T ss_pred HHHHHHHHHHHCCCEEEe-----CCEEEE
Confidence 333489999999999876 355654
No 431
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=23.09 E-value=1.4e+02 Score=24.76 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=26.4
Q ss_pred CcchHHHHHHHH----HCCCCeEEEeehHH------HHhcCCCCCCeEEEEccCCCC
Q 046950 183 GGNGTFSRIISE----AFPGIKCTVLDLPH------AVANLPEADNLKYIAGDMFRF 229 (239)
Q Consensus 183 GG~G~~~~~l~~----~~P~l~~~~~Dlp~------vi~~a~~~~ri~~~~gD~f~~ 229 (239)
||+|..+..+++ ..++.+++++|... -++......+++++.+|+.++
T Consensus 6 GatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 62 (317)
T TIGR01181 6 GGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDR 62 (317)
T ss_pred cCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCH
Confidence 455555554444 33557888887521 111111134688889998763
No 432
>PTZ00117 malate dehydrogenase; Provisional
Probab=23.04 E-value=1.8e+02 Score=25.17 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCcEEEecCcc-hHHHHHHHHHCCCCeEEEeehHHHHh--------cCCC--CCCeEEEE-ccCCCCCCCceEEEe
Q 046950 174 GLGSLVDVGGGN-GTFSRIISEAFPGIKCTVLDLPHAVA--------NLPE--ADNLKYIA-GDMFRFIPPADAFLF 238 (239)
Q Consensus 174 ~~~~vvDVGGG~-G~~~~~l~~~~P~l~~~~~Dlp~vi~--------~a~~--~~ri~~~~-gD~f~~~p~~D~~~l 238 (239)
+..+|.=||+|+ |.....++....-...+++|..+-.. ++.. ....+... +|+ +.+..+|+++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEE
Confidence 345889999988 77666555555434689999843211 1111 12234333 443 45656888875
No 433
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=22.93 E-value=1.2e+02 Score=26.36 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=25.4
Q ss_pred EEEecCcchHHHHHHHHHCCC-CeEEEeehH
Q 046950 178 LVDVGGGNGTFSRIISEAFPG-IKCTVLDLP 207 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~-l~~~~~Dlp 207 (239)
|+=||||.+-.+.++.-.... ++++++|..
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEAN 32 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence 788999999888887777777 999999983
No 434
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.59 E-value=1.4e+02 Score=21.44 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCCcEEEecCcchHH-HHHHHHHCCCCe-EEEeehHHHHhcC
Q 046950 174 GLGSLVDVGGGNGTF-SRIISEAFPGIK-CTVLDLPHAVANL 213 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~-~~~l~~~~P~l~-~~~~Dlp~vi~~a 213 (239)
+.--+.|+=||+=.. +..+..++|+++ +.++.+|=+++.+
T Consensus 60 ~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG~NLpmlle~~ 101 (116)
T TIGR00824 60 EVLFLVDIFGGSPYNAAARIIVDKPHMDVIAGVNLPLLLETL 101 (116)
T ss_pred CEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEecCHHHHHHHH
Confidence 344688996666655 445667789997 5899999887754
No 435
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=22.53 E-value=1.2e+02 Score=26.56 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.2
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||.+-.+.++.-...+++++++|..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 45888999999887777776678999999973
No 436
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.48 E-value=1.2e+02 Score=21.90 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCcEEEecCcchHH-HHHHHHHCCCCe-EEEeehHHHHhcCC
Q 046950 174 GLGSLVDVGGGNGTF-SRIISEAFPGIK-CTVLDLPHAVANLP 214 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~-~~~l~~~~P~l~-~~~~Dlp~vi~~a~ 214 (239)
+.--++|+-||+=.. +..+...+++++ +.++++|=+++.+.
T Consensus 59 ~viil~Dl~GGSp~n~~~~~~~~~~~~~visG~nlpmlle~~~ 101 (122)
T cd00006 59 GVLILTDLFGGSPNNAAARLSMEHPPVEVIAGVNLPMLLEAAR 101 (122)
T ss_pred cEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEccCHHHHHHHHH
Confidence 445789995555554 556666667876 68899998877543
No 437
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=22.34 E-value=1e+02 Score=28.30 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=23.7
Q ss_pred EEEecCcchHHHHHHHHHCC-CCeEEEeeh
Q 046950 178 LVDVGGGNGTFSRIISEAFP-GIKCTVLDL 206 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P-~l~~~~~Dl 206 (239)
|+=||||.|-+..++...-. ..++.++|.
T Consensus 6 viVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 6 LVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 88899999999877666654 789999984
No 438
>PRK08013 oxidoreductase; Provisional
Probab=22.23 E-value=1.2e+02 Score=26.77 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.4
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.|+=||||..-.+.++.-+...++++++|.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 589999999988888777778999999997
No 439
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=22.13 E-value=1.2e+02 Score=18.86 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhChhhHh
Q 046950 15 GQAQLYKLMFNHLSSMSLKCAIELGIADII 44 (239)
Q Consensus 15 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L 44 (239)
....+.+++.+.....++....++|+++.|
T Consensus 27 i~~El~kil~~~~~~~~~~~l~~~gll~~i 56 (64)
T PF12627_consen 27 IREELEKILSSPNPSRAFKLLDELGLLEYI 56 (64)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCHHHH
Confidence 345566666777788899999999999886
No 440
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=21.96 E-value=2.2e+02 Score=24.56 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=32.2
Q ss_pred CcEEEecCcchHHHHHHHHHC--CCCeEEEeehH-----HHHhcCC------CCCCeEEEEccCCC
Q 046950 176 GSLVDVGGGNGTFSRIISEAF--PGIKCTVLDLP-----HAVANLP------EADNLKYIAGDMFR 228 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~--P~l~~~~~Dlp-----~vi~~a~------~~~ri~~~~gD~f~ 228 (239)
++|+=.| |+|..+..|+++. .+.+++++|.. ...+... ...+++++.+|+.+
T Consensus 16 ~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 16 KRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred CEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 5666554 7787777666655 34678888862 1222111 12578999999976
No 441
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.94 E-value=1.3e+02 Score=26.57 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
...|+=||||.+-.+.++.-+.-+++++++|..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecC
Confidence 457999999999888887777778999999973
No 442
>PLN02661 Putative thiazole synthesis
Probab=21.93 E-value=1.2e+02 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.9
Q ss_pred CcEEEecCcchHHHHHHHH-HCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISE-AFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~-~~P~l~~~~~Dlp 207 (239)
..|+-||||...+..++.- +.|+++++++|..
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~ 125 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS 125 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 4699999998777665555 4689999999973
No 443
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.86 E-value=1.4e+02 Score=27.35 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=28.7
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehHH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp~ 208 (239)
..+|=||+|.|-++.++.-+--.+++.|++...
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 468999999999999888888899999999644
No 444
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=21.82 E-value=1.2e+02 Score=26.94 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=24.3
Q ss_pred cEEEecCcchHHHHHHHHH-CCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEA-FPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~-~P~l~~~~~Dlp 207 (239)
+|+=||||.|-.+.+++-+ .+.++++|+|..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~ 33 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAA 33 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecC
Confidence 5888999999887766544 466899999984
No 445
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=21.73 E-value=64 Score=29.81 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.6
Q ss_pred CCcEEEecCcchHH
Q 046950 175 LGSLVDVGGGNGTF 188 (239)
Q Consensus 175 ~~~vvDVGGG~G~~ 188 (239)
...|+|||||+=.+
T Consensus 133 ~~lviDIGGGStEl 146 (496)
T PRK11031 133 QRLVVDIGGASTEL 146 (496)
T ss_pred CEEEEEecCCeeeE
Confidence 35799999997443
No 446
>PLN02852 ferredoxin-NADP+ reductase
Probab=21.66 E-value=1.4e+02 Score=27.58 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCCcEEEecCcchHHHH--HHHHHCCCCeEEEeehH
Q 046950 174 GLGSLVDVGGGNGTFSR--IISEAFPGIKCTVLDLP 207 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~~~--~l~~~~P~l~~~~~Dlp 207 (239)
..++|+=||+|.+.+.. .|+++.+..+++++|..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~ 60 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL 60 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 45789999999766643 34445688999999983
No 447
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=21.57 E-value=1.8e+02 Score=25.44 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=23.9
Q ss_pred CCcEEEecCcchHHHHHHHHHCCCCeE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFPGIKC 201 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P~l~~ 201 (239)
..++|-=|||.|.++..|+...+.++|
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qG 177 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQG 177 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccc
Confidence 457888999999999999999998876
No 448
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=21.54 E-value=1.2e+02 Score=27.50 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=25.3
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.||=||||.|-+..++..+.-..+++++|.
T Consensus 6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~ 35 (472)
T PRK05976 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEK 35 (472)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEc
Confidence 488999999888777777777889999996
No 449
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=21.45 E-value=1.2e+02 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.3
Q ss_pred EEEecCcchHHHH--HHHHHCCCCeEEEeehHH
Q 046950 178 LVDVGGGNGTFSR--IISEAFPGIKCTVLDLPH 208 (239)
Q Consensus 178 vvDVGGG~G~~~~--~l~~~~P~l~~~~~Dlp~ 208 (239)
|+=||||.+..+. .|.+..|+++++++|-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6778999877755 455557899999998854
No 450
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=21.25 E-value=3.2e+02 Score=23.02 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCcEEEec-CcchHHHHHHHHHCCCCeEEEeehHHH
Q 046950 175 LGSLVDVG-GGNGTFSRIISEAFPGIKCTVLDLPHA 209 (239)
Q Consensus 175 ~~~vvDVG-GG~G~~~~~l~~~~P~l~~~~~Dlp~v 209 (239)
.++|+=|| ||.|.++.+.+.+--==+.+++|...|
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 34555555 467888776666544446788888554
No 451
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=21.17 E-value=2e+02 Score=20.81 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=19.5
Q ss_pred HHHHHHhCCceeeeccCCCccccccCcccc
Q 046950 56 LMRLLVHSGCFKKTKVNGEEEAYGLTAAST 85 (239)
Q Consensus 56 lLr~L~~~g~l~~~~~~~~~~~y~~t~~s~ 85 (239)
+++.|...|++..... ..|.|.++.-..
T Consensus 45 il~~L~~~gli~~~~g--~~ggy~l~~~~~ 72 (132)
T TIGR00738 45 ILRTLRRAGLVESVRG--PGGGYRLARPPE 72 (132)
T ss_pred HHHHHHHCCcEEeccC--CCCCccCCCCHH
Confidence 8999999999987531 145677765443
No 452
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=21.07 E-value=1.1e+02 Score=28.54 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=24.5
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
.|+=||||.+.+..++..+....+++++|..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 5889999988887776655567888888853
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.07 E-value=2.2e+02 Score=25.48 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=0.0
Q ss_pred CcEEEecCcchHHHHHHHHHCCC--CeEEEeeh-HHHHhcCCC-CCCeEEEEccCCC-------CCCCceEEEe
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPG--IKCTVLDL-PHAVANLPE-ADNLKYIAGDMFR-------FIPPADAFLF 238 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~--l~~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~-------~~p~~D~~~l 238 (239)
.+++=+|+ |.++..+++..-. .+++++|. |+.++.+++ ..++.++.||..+ .+..+|+++.
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
No 454
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=21.02 E-value=86 Score=19.07 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHhCCceeeec
Q 046950 56 LMRLLVHSGCFKKTK 70 (239)
Q Consensus 56 lLr~L~~~g~l~~~~ 70 (239)
+++-|...|++++..
T Consensus 37 ~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 37 IIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCEEecc
Confidence 889999999999875
No 455
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=20.99 E-value=1.7e+02 Score=24.67 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=36.8
Q ss_pred cEEEecCcchHHHHHHHHHCCCCe-EEEeeh-HHHHhcCCC-CCCeEEEEccCCC----C-CCCceEEEe
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIK-CTVLDL-PHAVANLPE-ADNLKYIAGDMFR----F-IPPADAFLF 238 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~-~~~~Dl-p~vi~~a~~-~~ri~~~~gD~f~----~-~p~~D~~~l 238 (239)
+++|+-||.|.+...+.+.- .+ +...|. +.+++..+. -.. .++.+|+.+ + .+.+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEe
Confidence 68999999999999998864 55 466887 444443221 111 145566654 1 234788765
No 456
>PRK06185 hypothetical protein; Provisional
Probab=20.98 E-value=1.2e+02 Score=26.63 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=26.3
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||..-.+.++.-+..+++++++|..
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 35889999998887777766678999999973
No 457
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=20.90 E-value=1.2e+02 Score=29.26 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.1
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
-|+=||||.|-+..++...--.++++++|.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~ 147 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTG 147 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 489999999999888888878999999983
No 458
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.77 E-value=1e+02 Score=27.80 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=23.1
Q ss_pred EEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 178 LVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 178 vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
||=||||.+-.+.++..+.-.+++++++.-
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKG 31 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 688999999999999988889999999973
No 459
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.74 E-value=1.3e+02 Score=27.31 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=24.7
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dl 206 (239)
.|+=||||.|-+..++....-..+++++|.
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~ 35 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 488999999888777776666889999984
No 460
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=20.72 E-value=1e+02 Score=20.84 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=19.2
Q ss_pred hcCCCcEEEecCcchHHHH-HHHHHC-CCCe--EEEeehH
Q 046950 172 FEGLGSLVDVGGGNGTFSR-IISEAF-PGIK--CTVLDLP 207 (239)
Q Consensus 172 ~~~~~~vvDVGGG~G~~~~-~l~~~~-P~l~--~~~~Dlp 207 (239)
..++++||-||+.+|.-+. .++.+| -+.. ++-+|.|
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk~ 75 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEKP 75 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE----
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeeccC
Confidence 4778999999999998754 566554 2333 3555544
No 461
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=20.64 E-value=2.9e+02 Score=25.01 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=37.8
Q ss_pred CCcEEEecCcchHHHHHHHHHCC--CCeEEEeehHH-----HHhcCCCCCCeEEEEccCCCCCC-CceEEE
Q 046950 175 LGSLVDVGGGNGTFSRIISEAFP--GIKCTVLDLPH-----AVANLPEADNLKYIAGDMFRFIP-PADAFL 237 (239)
Q Consensus 175 ~~~vvDVGGG~G~~~~~l~~~~P--~l~~~~~Dlp~-----vi~~a~~~~ri~~~~gD~f~~~p-~~D~~~ 237 (239)
..+|+=. ||+|..+..|+++.- +.+++++|... .+.......+++++.+|..++.- .+|+|+
T Consensus 120 ~mkILVT-GatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~Vi 189 (436)
T PLN02166 120 RLRIVVT-GGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIY 189 (436)
T ss_pred CCEEEEE-CCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEE
Confidence 3566644 577888777777553 45788888531 11111113478899999887543 377765
No 462
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=1.2e+02 Score=26.34 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCCcEEEecCcchHH--HHHHHHHCC-CCeE
Q 046950 174 GLGSLVDVGGGNGTF--SRIISEAFP-GIKC 201 (239)
Q Consensus 174 ~~~~vvDVGGG~G~~--~~~l~~~~P-~l~~ 201 (239)
...+|+=||||+|.. +..+.+..| ++++
T Consensus 6 ~~~kvvvlgGGtGl~~lL~gLk~~~~~~iTa 36 (323)
T COG0391 6 KKPKVVVLGGGTGLPKLLSGLKRLLPSEITA 36 (323)
T ss_pred cCceEEEEcCCCCHHHHHHHHHhhcCceEEE
Confidence 456899999999976 555665554 5554
No 463
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=20.50 E-value=42 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=13.7
Q ss_pred hhhcCCCcEEEecCcch
Q 046950 170 QIFEGLGSLVDVGGGNG 186 (239)
Q Consensus 170 ~~~~~~~~vvDVGGG~G 186 (239)
|.+-+.+.++|+||=++
T Consensus 31 WVFIn~kLv~DlGG~H~ 47 (90)
T TIGR02148 31 WVFINNKLVVDIGGQHP 47 (90)
T ss_pred EEEECCEEEEEccCcCC
Confidence 55677889999998765
No 464
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=20.41 E-value=1.4e+02 Score=26.05 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=26.3
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||.+-.+.++.-+.-.++++++|..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 35999999998887777666678999999973
No 465
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=20.41 E-value=1.4e+02 Score=26.86 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=23.9
Q ss_pred cEEEecCcchHHHHHHHHHC----CCCeEEEeeh
Q 046950 177 SLVDVGGGNGTFSRIISEAF----PGIKCTVLDL 206 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~----P~l~~~~~Dl 206 (239)
.|+=||||.+-.+.++.-+. ..++++++|.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 37889999987777666554 5889999997
No 466
>PRK06116 glutathione reductase; Validated
Probab=20.29 E-value=1.4e+02 Score=26.98 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=25.0
Q ss_pred cEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 177 SLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 177 ~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
-|+=||||.|-+..++..+.-..+++++|-.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3888999998887777766668899999953
No 467
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.24 E-value=1.8e+02 Score=24.43 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=33.1
Q ss_pred HHHHHHHHhhchhhhHHHHHHHhhhhhhcCCCcEEEecCcchHH---------HHHHHHHCCCCeEEEeeh--HHHHhcC
Q 046950 145 NQRFNEAMASDSEIMTTFVVKSECKQIFEGLGSLVDVGGGNGTF---------SRIISEAFPGIKCTVLDL--PHAVANL 213 (239)
Q Consensus 145 ~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~~~vvDVGGG~G~~---------~~~l~~~~P~l~~~~~Dl--p~vi~~a 213 (239)
.+.|.+++...... .++ +.-.........++|||++...- ...+.+.. ++. +.+|. |+|++.+
T Consensus 12 ~~~~~~~~~~~d~~---~i~-~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~p-lsIDT~~~~v~eaa 85 (261)
T PRK07535 12 RKSIAEAIEAKDAA---FIQ-KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVP-LCIDSPNPAAIEAG 85 (261)
T ss_pred hHHHHHHHHcCCHH---HHH-HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCC-EEEeCCCHHHHHHH
Confidence 45677776554432 222 11111234567999999997631 11222222 222 67777 6676655
Q ss_pred C
Q 046950 214 P 214 (239)
Q Consensus 214 ~ 214 (239)
-
T Consensus 86 L 86 (261)
T PRK07535 86 L 86 (261)
T ss_pred H
Confidence 4
No 468
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=20.06 E-value=83 Score=21.37 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhCCceeeeccCCCccccccCccccccc
Q 046950 50 AITLSELMRLLVHSGCFKKTKVNGEEEAYGLTAASTLLI 88 (239)
Q Consensus 50 ~~t~~elLr~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~ 88 (239)
+.|+..+++-|...|++.+.. +..|.+|+.+..+.
T Consensus 13 ~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~ 47 (96)
T smart00529 13 PPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLA 47 (96)
T ss_pred hHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHH
Confidence 445555899999999999986 45788888776554
No 469
>PRK06474 hypothetical protein; Provisional
Probab=20.04 E-value=1.5e+02 Score=23.20 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=31.9
Q ss_pred HHHHHHhChhhHhhhCCCCCCHHH---------------HHHHHHhCCceeeeccC----CCccccccCcccccc
Q 046950 32 LKCAIELGIADIIHSHGRAITLSE---------------LMRLLVHSGCFKKTKVN----GEEEAYGLTAASTLL 87 (239)
Q Consensus 32 L~~a~~lglfd~L~~~~~~~t~~e---------------lLr~L~~~g~l~~~~~~----~~~~~y~~t~~s~~l 87 (239)
|.--.++.|++.|...+++.|+.+ .|+.|...|++...... ..+..|+.++.+-.+
T Consensus 8 La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~~~ 82 (178)
T PRK06474 8 LMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDAKI 82 (178)
T ss_pred hCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccceeee
Confidence 333445555555554322355555 78899999999976421 001247777655444
No 470
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=20.01 E-value=1.4e+02 Score=26.29 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=26.7
Q ss_pred CcEEEecCcchHHHHHHHHHCCCCeEEEeehH
Q 046950 176 GSLVDVGGGNGTFSRIISEAFPGIKCTVLDLP 207 (239)
Q Consensus 176 ~~vvDVGGG~G~~~~~l~~~~P~l~~~~~Dlp 207 (239)
..|+=||||.+-.+.++.-+..+++++++|..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~ 34 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 36899999999888877777778999999973
No 471
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=20.01 E-value=1.4e+02 Score=27.10 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=24.3
Q ss_pred HhhhhhhcCCCcEEEecCcchH-----HHHHHHHHCCCC
Q 046950 166 SECKQIFEGLGSLVDVGGGNGT-----FSRIISEAFPGI 199 (239)
Q Consensus 166 ~~~~~~~~~~~~vvDVGGG~G~-----~~~~l~~~~P~l 199 (239)
+.++ .+.+...+-.+|||+|. ++..|...||+.
T Consensus 125 E~cd-~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~ 162 (431)
T cd02188 125 DGSD-SLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKK 162 (431)
T ss_pred hcCC-CcceeEEEecCCCCcchhHHHHHHHHHHhHcCcc
Confidence 5555 46677889999999983 455677789865
Done!