BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046954
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
+ +S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
H + ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
+ +S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
H + ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
+ +S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 101 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 143
H ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 222 HEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQAQRVA+AR LA EP+++L DEPTSALDP + V+ +L + GMT+V+V+H
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE 218
Query: 103 IKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 142
+ + + D V + G I+E KP DL +H FL
Sbjct: 219 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 259
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQAQRVA+AR LA EP+++L DEPTSALDP + V+ +L + GMT+V+V+H
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE 197
Query: 103 IKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 142
+ + + D V + G I+E KP DL +H FL
Sbjct: 198 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 238
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 64/90 (71%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S G+ QRVALAR L P++LLLDEP SALDP + +N ++L L KK+ +T++ ++H
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 103 IKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132
+ + +AD + ++++G++++V KP+ + E
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
E+S GQ QRVALAR L +P +LLLDEP S LD + ++ +++ + G+T+++VSH
Sbjct: 140 ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG 146
I IAD V +LV G++V+V KP+ L + +P++++ L G
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGKPEDLYD--NPVSIQVASLIG 242
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S GQ QRVA+AR L EPEVLLLDEP S LD + + L +L+K+ G+T V V+H
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPD 128
+ +AD + ++ GEI++V PD
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPD 219
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S GQ QRVA+AR LAN P ++L DEPT ALD + + I +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Query: 102 SIKQIQRIADVVCLLVNGEI 121
I + R + + L +GE+
Sbjct: 205 DI-NVARFGERIIYLKDGEV 223
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
E+S Q QRVALAR L +P +LLLDEP S LD + ++ +++ + G+T+++VSH
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG 146
I IAD V +LV G++V+V KP+ L + +P++++ L G
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGKPEDLYD--NPVSIQVASLIG 242
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S GQ QRVA+AR LAN P ++L D+PT ALD + + I +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 102 SIKQIQRIADVVCLLVNGEI 121
I + R + + L +GE+
Sbjct: 205 DI-NVARFGERIIYLKDGEV 223
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQ +RVA+A L EP+VL+LDEPT+ LDP+ I +LV+++K+ G+TI++ +H
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 103 IKQIQRIADVVCLLVNGEIV 122
I + D V ++ G ++
Sbjct: 204 IDIVPLYCDNVFVMKEGRVI 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S GQ QRVA+AR LAN P ++L D+PT ALD + + I +L KL ++ G T+V+V+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 102 SIKQIQRIADVVCLLVNGEI 121
I + R + + L +GE+
Sbjct: 205 DI-NVARFGERIIYLKDGEV 223
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 1 TVADNIRYGPQLRGKKLTENEV---YKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTL 57
TV DN+ +G LR K++ ++E+ + + E+S GQ QRVALAR L
Sbjct: 103 TVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL 160
Query: 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
A P+VLL DEP +A+D + + + ++ + G+T V V+H ++ +AD V +L
Sbjct: 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH 220
Query: 118 NGEIVEVLKPDLLSE 132
G + + P+ + E
Sbjct: 221 EGNVEQFGTPEEVYE 235
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 1 TVADNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
+VA+N+ +G +L G KK N+ + +S GQ QRVA+ RTL
Sbjct: 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
EP V LLDEP S LD + + +L K+ G T++ V+H + +AD + +L G
Sbjct: 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
Query: 120 EIVEVLKPDLLSEAKHPMALRFL 142
+ +V KP E H A RF+
Sbjct: 211 RVAQVGKP---LELYHYPADRFV 230
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 1 TVADNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
+VA+N+ +G +L G KK N+ + +S GQ QRVA+ RTL
Sbjct: 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
EP V LLDEP S LD + + +L K+ G T++ V+H + +AD + +L G
Sbjct: 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
Query: 120 EIVEVLKPDLLSEAKHPMALRFL 142
+ +V KP E H A RF+
Sbjct: 211 RVAQVGKP---LELYHYPADRFV 230
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S GQ QR+A+AR L +P +LLLDE TSALD S + +++ L K + G T +++
Sbjct: 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD--KAREGRTCIVI 1226
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
+H + IQ AD++ ++ NG++ E
Sbjct: 1227 AHRLSTIQN-ADLIVVIQNGKVKE 1249
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX----------KTGAEISVGQAQR 50
T+A+NIRYG + +T +E+ K + GA++S GQ QR
Sbjct: 479 TIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR 534
Query: 51 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
+A+AR L P++LLLDE TSALD S ++ L K + G T ++++H + + R A
Sbjct: 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALD--KAREGRTTIVIAHRLSTV-RNA 591
Query: 111 DVVCLLVNGEIVE 123
DV+ G IVE
Sbjct: 592 DVIAGFDGGVIVE 604
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
K +S GQ QRV++AR LA EP+VLL DEPTSALDP + ++ +L ++ G T+V
Sbjct: 149 KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMV 207
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSEAKHPMALRFLQLS 145
+V+H + + ++ V L G+I E P+ + + P +FL+ S
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGS 256
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S GQ QR+A+AR L +P +LLLDE TSALD S + +++ L K + G T +++
Sbjct: 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD--KAREGRTCIVI 1226
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
+H + IQ AD++ ++ NG++ E
Sbjct: 1227 AHRLSTIQN-ADLIVVIQNGKVKE 1249
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX----------KTGAEISVGQAQR 50
T+A+NIRYG + +T +E+ K + GA++S GQ QR
Sbjct: 479 TIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR 534
Query: 51 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110
+A+AR L P++LLLDE TSALD S ++ L K + G T ++++H + + R A
Sbjct: 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALD--KAREGRTTIVIAHRLSTV-RNA 591
Query: 111 DVVCLLVNGEIVE 123
DV+ G IVE
Sbjct: 592 DVIAGFDGGVIVE 604
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S GQ QR+A+AR L P++LLLDE TSALD S ++ L K K G T +++
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIII 609
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEV 124
+H + I R AD++ NG++VEV
Sbjct: 610 AHRLSTI-RNADLIISCKNGQVVEV 633
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S GQ QR+A+AR L P++LLLDE TSALD S + +++ L + + G T +++
Sbjct: 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD--RAREGRTCIVI 1272
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
+H + + AD + ++ NG I+E
Sbjct: 1273 AHRLNTVMN-ADCIAVVSNGTIIE 1295
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 1 TVADNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
+VA+N+ +G +L G KK N+ + +S GQ QRVA+ RTL
Sbjct: 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
Query: 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
EP V LLD+P S LD + + +L K+ G T++ V+H + +AD + +L G
Sbjct: 151 EPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
Query: 120 EIVEVLKPDLLSEAKHPMALRFL 142
+ +V KP E H A RF+
Sbjct: 211 RVAQVGKP---LELYHYPADRFV 230
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
E+S G+ QRVA+AR LANEP +L DEPT LD +T+ + D+ +K+ + G +IVMV+H
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NEGGTSIVMVTH 198
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G T++++
Sbjct: 139 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 196
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 197 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G T++++
Sbjct: 139 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 196
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 197 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G T++++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 194
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 195 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G T++++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 200
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 201 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
A +S G+ QRVALAR L +P +LLLDEP SA+D + + + L ++++ + I+ V+
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 101 HSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143
H + + +AD V +++NG IVE K L AK+ FL
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ D+ TSALD S I + K+ K G T++++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK--GRTVIII 200
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 201 AHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G +S GQ QRVA+AR L + VL+LDE TSALD S + I+ L +L+K T++
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK--TVL 533
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+++H + I++ AD + ++ GEI+E + DLL++
Sbjct: 534 VIAHRLSTIEQ-ADEILVVDEGEIIERGRHADLLAQ 568
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX---KTGAEISVGQAQRVALARTL 57
TV +NI + LR ++++++EV K + ++S GQ QRVALAR L
Sbjct: 91 TVFENIAF--PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL 148
Query: 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
+P+VLL DEP S LD + + L+++ G+T V V+H + +A + +
Sbjct: 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN 208
Query: 118 NGEIVEVLKPDLLSEAKHPM 137
G++V+ PD + ++ M
Sbjct: 209 QGKLVQYGTPDEVYDSPKNM 228
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G +S GQ QR+A+AR L P++LLLDE TSALD + +++ L +L G T++
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVL 567
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+++H + I+ A++V +L G+I E K +LLS+
Sbjct: 568 VIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 602
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S GQ QR+++AR N P +L+LDE TSALD S I++ L L K T ++V
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR--TTLIV 532
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
+H + I AD + ++ NG IVE
Sbjct: 533 AHRLSTITH-ADKIVVIENGHIVE 555
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
E+S GQ QRVAL R + +P+V L+DEP S LD + L KL+++ G+T + V+H
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPD 128
+ + D + ++ G + +V PD
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPD 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G T++++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 194
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+ + ++ AD + ++ G+IVE K +LLSE
Sbjct: 195 AARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
GA +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K G T++++
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIII 200
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+ + ++ AD + ++ G+IVE K +LLSE
Sbjct: 201 AARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G +S GQ QR+A+AR L P++LLLDE TSALD + +++ L +L G T++++
Sbjct: 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVI 538
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 132
+H + I+ A++V +L G+I E K +LLS+
Sbjct: 539 AHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S GQ Q +A+ R P++L+LDE TS +D + ++I+ + KL + G T +++
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIII 546
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134
+H + I+ AD++ +L +GEIVE+ K D L + +
Sbjct: 547 AHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKR 580
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXX------XXXXKTGAEISVGQAQRVALA 54
T+ADNIRYG G E + G ++S G+ QRVA+A
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114
RT+ P ++LLDE TSALD + + I+ L K+ T ++V+H + + AD +
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTIVVAHRLSTVVN-ADQIL 259
Query: 115 LLVNGEIVE 123
++ +G IVE
Sbjct: 260 VIKDGCIVE 268
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
+S GQ Q + +AR +A+E +++LLDEPTSALD + + +L+ L + MT+V +H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 102 SIKQIQRIADVVCLLVN-----GEIVEVLKPDLLSEAKH-PM 137
Q+ IA+ LL GE +L + L+ H PM
Sbjct: 188 QPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPM 229
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 44 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103
S G +++ +AR L P + +LDEPTS LD ++ + + +L K + G+TI++ SH++
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL-KQASQEGLTILVSSHNM 206
Query: 104 KQIQRIADVVCLLVNGEIVE 123
+++ + D + L+ NG IVE
Sbjct: 207 LEVEFLCDRIALIHNGTIVE 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX---KTGAEISVGQAQRVALARTL 57
TV +NI + L+ KK ++E+ K + A++S GQ QRVA+AR +
Sbjct: 99 TVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 156
Query: 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
EP+VLL+DEP S LD + + KL++K +T + V+H + + D + ++
Sbjct: 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 216
Query: 118 NGEIVEVLKP 127
G+++++ P
Sbjct: 217 RGQLLQIGSP 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXX---KTGAEISVGQAQRVALARTL 57
TV +NI + L+ KK ++E+ K + A++S GQ QRVA+AR +
Sbjct: 100 TVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 157
Query: 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
EP+VLL+DEP S LD + + KL++K +T + V+H + + D + ++
Sbjct: 158 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 217
Query: 118 NGEIVEVLKP 127
G+++++ P
Sbjct: 218 RGQLLQIGSP 227
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXX---XXXXXKTGAEISVGQAQRVALARTL 57
TV DNI + +LR K+ + E+ K + E+S GQ QRVAL R +
Sbjct: 100 TVYDNIAFPLKLR--KVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALGRAI 157
Query: 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117
P+V L DEP S LD L KL+++ G+T + V+H + D + +
Sbjct: 158 IRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXN 217
Query: 118 NGEIVEVLKPD 128
GE+ +V PD
Sbjct: 218 KGELQQVGTPD 228
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G +IS GQ QR+A+AR P++L+LDE T++LD S ++ L L K G T +++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVI 194
Query: 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142
+H + I AD + + G+I K + L A HP+ +++
Sbjct: 195 AHRLSTIVD-ADKIYFIEKGQITGSGKHNELV-ATHPLYAKYV 235
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G+++S GQ Q VALAR L +P VL+LD+ TSALD S +E +L + +++ +++
Sbjct: 150 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 209
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123
+++ + +++ AD + L G I E
Sbjct: 210 LITQHLSLVEQ-ADHILFLEGGAIRE 234
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K T +
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSL 533
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123
+++H + I++ AD + ++ +G IVE
Sbjct: 534 VIAHRLSTIEK-ADEIVVVEDGVIVE 558
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K T +
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSL 533
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123
+++H + I++ AD + ++ +G IVE
Sbjct: 534 VIAHRLSTIEQ-ADEIVVVEDGIIVE 558
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQ QR+A+A LA + L LDEP S LDP S + I VL LK + G I++V+H
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE-GKGIILVTHE 199
Query: 103 IKQIQRIADVVCLLVNGEI 121
++ + + D + + NG I
Sbjct: 200 LEYLDDM-DFILHISNGTI 217
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 43 ISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96
+S G+ QRV LAR LA P L LDEPTSALD Q+ +L +L ++ + +
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 128
V H + AD + LL G++V P+
Sbjct: 202 CCVLHDLNLAALYADRIMLLAQGKLVACGTPE 233
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G ++S G+ QR+A+AR L +P++++ DE TS+LD + + + L+K T++++
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TLIII 210
Query: 100 SHSIKQIQRIADVVCLLVNGEIVE 123
+H + I A+ + LL G+IVE
Sbjct: 211 AHRLSTISS-AESIILLNKGKIVE 233
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G QRV +A L +P VL+LDEPTSALD ++ +I +L +LKK +T++ V+H
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTH 213
Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
I +AD V ++ G +VE
Sbjct: 214 DIAVAAELADKVAVIYGGNLVE 235
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+TG ++S GQ Q VALAR L +P +L+LD+ TSALD + ++ +L + + T++
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123
+++H + +R A + L G + E
Sbjct: 212 LITHQLSLAER-AHHILFLKEGSVCE 236
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G S GQ QR+++AR L +P+VL+LD+ TS++DPI+ + I D L + K G T
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTF 532
Query: 98 MVSHSIKQIQRIADVVCLLVNGEI 121
+++ I +AD + +L G++
Sbjct: 533 IITQKIPT-ALLADKILVLHEGKV 555
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+TG +++VGQ Q VALAR L +P +L+LD TSALD + ++ +L + + T++
Sbjct: 152 ETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123
+++ + +R A + L G + E
Sbjct: 212 LITQQLSLAER-AHHILFLKEGSVCE 236
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ E+S GQ + V + R L P+++++DEP + + P +I + +++LK K G+T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFL 207
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIV 122
++ H + + D + ++ NG+I+
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ E+S GQ + V + R L P+++++DEP + + P +I + +++LK K G+T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFL 207
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIV 122
++ H + + D + ++ NG+I+
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+TG ++S GQ Q VALAR L +P +L+LD TSALD + ++ +L + + T++
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123
+++ + +R A + L G + E
Sbjct: 212 LITQQLSLAER-AHHILFLKEGSVCE 236
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S G+ +RVA+A + +EP++L+LDEP LD ++ ++ K K G T++++SH
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHD 199
Query: 103 IKQIQRIADVVCLLVNGEIV 122
I+ + D V +L G+ V
Sbjct: 200 IETVINHVDRVVVLEKGKKV 219
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S G+ +RVA+A + +EP++L+LDEP LD ++ ++ K K G T++++SH
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHD 197
Query: 103 IKQIQRIADVVCLLVNGEIV 122
I+ + D V +L G+ V
Sbjct: 198 IETVINHVDRVVVLEKGKKV 217
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 1 TVADNIRYG-PQLRGKKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLAN 59
TV NI YG +G+ E + + + E+S GQ QR ALAR LA
Sbjct: 96 TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155
Query: 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119
+PE++LLDEP SALD + I + ++ + +G + V VSH ++ + AD + ++ G
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215
Query: 120 EIVEVLKP 127
I++ P
Sbjct: 216 RILQTASP 223
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ E+S GQ + V + R L P+++++D+P + + P +I + +++LK K G+T +
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK-GITFL 207
Query: 98 MVSHSIKQIQRIADVVCLLVNGEIV 122
++ H + + D + ++ NG+I+
Sbjct: 208 IIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVM 98
G +S GQ QRV+LAR + + ++ L D+P SA+D + E+V+ T ++
Sbjct: 125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL 184
Query: 99 VSHSIKQIQRIADVVCLLVNGEIVEV 124
V+HS+ + ++ DV+ ++ G+I E+
Sbjct: 185 VTHSMSYLPQV-DVIIVMSGGKISEM 209
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSH 101
+S G+ QRV +AR L +P+VL+LDEP + LD I+ +++ +L L + + + V+H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 102 SIKQIQRIADVVCLLVNGEIVE 123
I++I + LL +G+ ++
Sbjct: 222 FIEEITANFSKILLLKDGQSIQ 243
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 42 EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
++S G+ QRV LA + AN ++LLLD+P ++LD ++ Q+ D ++ + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD-VAQQSALDKILSALSQQGL 184
Query: 95 TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 146
IVM SH + R A LL G+++ EVL P L++A + M R L + G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YGMNFRRLDIEG 241
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 42 EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
++S G+ QRV LA + AN ++LLLD+P +LD ++ Q+ D ++ + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD-VAQQSALDKILSALSQQGL 184
Query: 95 TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 146
IVM SH + R A LL G+++ EVL P L++A + M R L + G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YGMNFRRLDIEG 241
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G+ QRVA+A TL + ++ LLDEP++ LD + + L +K+ T ++V H
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 140
+ I ++D + ++ GE P A PM +R
Sbjct: 531 DVLMIDYVSDRL-IVFEGE------PGRHGRALPPMGMR 562
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G+ QRVA+A L + DEP+S LD + V+ +L + G +++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 286
Query: 102 SIKQIQRIADVV 113
+ + ++DV+
Sbjct: 287 DLAVLDYLSDVI 298
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G+ QRVA+A TL + ++ LLDEP++ LD + + L +K+ T ++V H
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 102 SIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 140
+ I ++D + ++ GE P A PM +R
Sbjct: 517 DVLMIDYVSDRL-IVFEGE------PGRHGRALPPMGMR 548
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G+ QRVA+A L + DEP+S LD + V+ +L + G +++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEH 272
Query: 102 SIKQIQRIADVV 113
+ + ++DV+
Sbjct: 273 DLAVLDYLSDVI 284
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
E+S G+ QRVA+A TL + ++ LLDEP++ LD + + L +K+ T ++V H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 102 SIKQIQRIAD 111
+ I ++D
Sbjct: 461 DVLXIDYVSD 470
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S G+ QRVA+A L DEP+S LD N + +L ++ G ++++V H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHD 217
Query: 103 IKQIQRIADVVCLLVNGE 120
+ + ++D++ +V GE
Sbjct: 218 LAVLDYLSDIIH-VVYGE 234
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 43 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
+S G+AQRV LA L +N + +LDEPT+ L + DVL +L +G T++++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 602
Query: 100 SHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSEAKHPMALRFLQ 143
H++ I + AD + L G+IV V P+ ++E K R+L+
Sbjct: 603 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 42 EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
++S G+ QRV LA + AN ++LLLDEP ++LD ++ Q+ D ++ + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALSQQGL 184
Query: 95 TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
IV SH + R A LL G+ + EVL P L++A
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 43 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
+S G+AQRV LA L +N + +LDEPT+ L + DVL +L +G T++++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 904
Query: 100 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143
H++ I + AD + L G+IV V P+ ++E K R+L+
Sbjct: 905 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 43 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
+S G+AQRV LA L +N + +LDEPT+ L + DVL +L +G T++++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 904
Query: 100 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143
H++ I + AD + L G+IV V P+ ++E K R+L+
Sbjct: 905 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 42 EISVGQAQRVALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
++S G+ QRV LA + AN ++LLLDEP ++LD ++ Q+ D ++ + G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALCQQGL 184
Query: 95 TIVMVSHSIKQIQRIADVVCLLVNGEIV------EVLKPDLLSEA 133
IV SH + R A LL G+ + EVL P L++A
Sbjct: 185 AIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 38 KTGAEISVGQAQRVALARTLANEPE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94
+ E+S G+AQR+ LA L V +LDEPT+ L P + ++ LVKL G
Sbjct: 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GN 784
Query: 95 TIVMVSHSIKQI 106
T++ V H ++ +
Sbjct: 785 TVIAVEHKMQVV 796
Score = 35.4 bits (80), Expect = 0.013, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 38 KTGAEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
++ +S G+ QR+ LA L + V +LDEP++ L P T+ + L LK+ G +
Sbjct: 375 RSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNS 433
Query: 96 IVMVSHSIKQIQR 108
+ +V H + I+R
Sbjct: 434 LFVVEHDLDVIRR 446
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 85
G +S G Q + LAR++ ++ ++LLLDEP++ LDP++ Q I L
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G+ QR A+ + E +V + DEP+S LD N ++ L ++ V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY-VICVEH 279
Query: 102 SIKQIQRIADVVCLL 116
+ + ++D VC++
Sbjct: 280 DLSVLDYLSDFVCII 294
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI--EDVLVKLKKKHGMTIVMVS 100
+S G+ QRVA+ L ++ L+DEP++ LD S Q I V+ + + T +V
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLD--SEQRIICSKVIRRFILHNKKTAFIVE 525
Query: 101 HSIKQIQRIADVVCLL 116
H +AD V +
Sbjct: 526 HDFIMATYLADKVIVF 541
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
+S G ++ALAR + ++LLLDEPT+ LD ++ LV G+T + +SH
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA----WLVNYLNTCGITSITISH 603
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQ ++ LA P +++LDEPT+ LD S L K K+ +++++HS
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITHS 957
Query: 103 IKQIQRIADVVCLLVNGEI 121
+ + + + V + +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRM 976
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
+S G ++ALAR + ++LLLDEPT+ LD ++ LV G+T + +SH
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA----WLVNYLNTCGITSITISH 597
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQ ++ LA P +++LDEPT+ LD S L K K+ +++++HS
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITHS 951
Query: 103 IKQIQRIADVVCLLVNG 119
+ + + + V + +G
Sbjct: 952 AEFTKNLTEEVWAVKDG 968
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD + + + E + KL T ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--TRIL 215
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 216 VTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD + + + E + KL T ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--TRIL 215
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 216 VTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD + + + E + KL T ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--TRIL 215
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 216 VTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD + + + E + KL T ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--TRIL 215
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 216 VTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD + + + E + KL T ++
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--TRIL 214
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 215 VTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 255
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 43 ISVGQAQRVALARTLANEPE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
+S G+AQR+ LA L + +LDEPT L + + +VL +L + G T++++
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVI 864
Query: 100 SHSIKQIQRIADVVCL-----LVNGEIVEVLKPDLLSEAKHPMALRFLQ 143
H++ I+ ++ L G IV P+ +++ H RFL+
Sbjct: 865 EHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 38 KTGAEISVGQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
++ +S G++QR+ LA + + + +LDEPT L P T+ + L KL+ G T
Sbjct: 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNT 518
Query: 96 IVMVSHSIKQIQRIAD 111
+++V H +++ R AD
Sbjct: 519 VIVVEHD-EEVIRNAD 533
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 1 TVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANE 60
+V D ++ L G K+ +NE+ K E+S G +RV LA TL
Sbjct: 94 SVEDYLKAVASLYGVKVNKNEI--MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151
Query: 61 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
E+ +LD+P A+D S + ++++ K+ G+ I+
Sbjct: 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 214
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 215 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSK 255
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 214
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 215 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSK 255
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 40 GAEISVGQAQRVALARTL-ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98
G +I+V + R+A+A L N E ++LDEPT LD + ++ K+K M ++
Sbjct: 284 GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM--II 341
Query: 99 VSHSIKQIQRIADVV 113
++H ++++ +ADV+
Sbjct: 342 ITHH-RELEDVADVI 355
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S G+ Q++ +A TLA E ++ +LD+P+S LD + + ++ ++ ++ H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 102 SIKQIQRIADVVCLL 116
+ IAD + +
Sbjct: 445 DLSIHDYIADRIIVF 459
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S G QR+ +A +L E +V + D+P+S LD N+ + +L K +++V H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK--YVIVVDHD 196
Query: 103 IKQIQRIADVVCLL 116
+ + + D++ ++
Sbjct: 197 LIVLDYLTDLIHII 210
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97
+ G I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK ++
Sbjct: 55 RGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VI 113
Query: 98 MVSHSIKQIQRIADVVC 114
+VSH ++++ AD V
Sbjct: 114 LVSHD-EELKDAADHVI 129
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 197
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 198 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 238
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 158 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 215
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 216 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 256
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 184
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 185 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 225
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 185
Query: 99 VSHSIKQIQRIADVVCLLVNG 119
V+ ++ +++ AD + +L G
Sbjct: 186 VTSKMEHLKK-ADKILILHEG 205
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK +++V
Sbjct: 252 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VILV 310
Query: 100 SHSIKQIQRIADVVC 114
SH ++++ AD V
Sbjct: 311 SHD-EELKDAADHVI 324
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK +++V
Sbjct: 61 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VILV 119
Query: 100 SHSIKQIQRIADVVC 114
SH ++++ AD V
Sbjct: 120 SHD-EELKDAADHVI 133
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK +++V
Sbjct: 272 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VILV 330
Query: 100 SHSIKQIQRIADVVC 114
SH ++++ AD V
Sbjct: 331 SHD-EELKDAADHVI 344
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK +++V
Sbjct: 87 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VILV 145
Query: 100 SHSIKQIQRIADVVC 114
SH ++++ AD V
Sbjct: 146 SHD-EELKDAADHVI 159
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
G I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK +++V
Sbjct: 92 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VILV 150
Query: 100 SHSIKQIQRIADVVC 114
SH ++++ AD V
Sbjct: 151 SHD-EELKDAADHVI 164
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.2 bits (82), Expect = 0.006, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100
+ +S G ++ALAR + ++LLLDEPT+ LD ++ LV G+T + +S
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVA----WLVNYLNTCGITSITIS 602
Query: 101 H 101
H
Sbjct: 603 H 603
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
+S GQ ++ LA P +++LDEPT+ LD S L K K+ +++++HS
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITHS 957
Query: 103 IKQIQRIADVVCLLVNG 119
+ + + + V + +G
Sbjct: 958 AEFTKNLTEEVWAVKDG 974
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ +++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 215
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 216 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 256
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVM 98
G +S GQ +++LAR + + ++ LLD P LD ++ + I E + KL T ++
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRIL 214
Query: 99 VSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 132
V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 215 VTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 255
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 43 ISVGQAQRVALARTLANEPE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99
+S G+AQRV LA L V +LDEPT+ L + + +V+ L K G T++++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVI 922
Query: 100 SHSIKQIQ 107
H++ I+
Sbjct: 923 EHNLDVIK 930
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 38 KTGAEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95
+ A +S G+AQR+ LA + + + +LDEP+ L + + + L +L+ G T
Sbjct: 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL-GNT 575
Query: 96 IVMVSH---SIKQIQRIADV 112
+++V H +I+ I D+
Sbjct: 576 LIVVEHDEDTIEHADWIVDI 595
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++S GQ+ V + LA++PE++ LDEP +D V+ + K++G ++V+H
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH----VISRYIKEYGKEGILVTH 183
Query: 102 SIKQIQ 107
+ +
Sbjct: 184 ELDMLN 189
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
S G+ +R + + EPE+ +LDE S LD + + + D + L+ + ++V+H
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK-RSFIIVTHY 223
Query: 103 IKQIQRIA-DVVCLLVNGEIVE 123
+ + I D V +L G IV+
Sbjct: 224 QRILDYIKPDYVHVLYQGRIVK 245
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
S G+ +R + + EPE+ +LDE S LD + + + D + L+ + ++V+H
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK-RSFIIVTHY 204
Query: 103 IKQIQRIA-DVVCLLVNGEIVE 123
+ + I D V +L G IV+
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVK 226
>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 155
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 66 LDEPTSALDPISTQNIEDVLVKLKKKHG---MTIVMVSHSIKQIQRIADVVCLLVNGEIV 122
++E T+ DPI + ++LV KHG + ++ ++K+IQ+ + L V + +
Sbjct: 7 VEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAI 66
Query: 123 EVLKPDLLSEAK 134
+ PD+ +A+
Sbjct: 67 RGVTPDIAVKAR 78
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 84 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-----------------NGEIVEVLK 126
+ +LK G+ I+ H I Q Q +ADVV ++ G ++ V K
Sbjct: 80 IFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAXAKTGAVINVKK 139
Query: 127 PDLLSEAK 134
P LS ++
Sbjct: 140 PQFLSPSQ 147
>pdb|3TWL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg
pdb|3TWM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fpg
pdb|3TWM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Fpg
Length = 310
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 40 GAEISVGQAQRVALARTLANEPEVLLLDE--PTSALDPISTQNIEDVLVKLK 89
G E+S +R A R LAN V + E P + L+P++ + L K K
Sbjct: 117 GLELSFTDKRRFAKVRLLANPTSVSPISELGPDALLEPMTVDEFAESLAKKK 168
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102
S G+ +R + + L EP +LDE S LD I + V + ++++H
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVVARGVNAMRGPNFGALVITHY 202
Query: 103 IKQIQRI-ADVVCLLVNGEIVEVLKPDLLSE 132
+ + I D V ++++G +V P+L E
Sbjct: 203 QRILNYIQPDKVHVMMDGRVVATGGPELALE 233
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 51 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101
++LA + + +DE S+LD + + I VL +L++ + + IV ++H
Sbjct: 294 MSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV-IVFITH 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,286,814
Number of Sequences: 62578
Number of extensions: 96363
Number of successful extensions: 424
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 127
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)