Query 046954
Match_columns 146
No_of_seqs 209 out of 2163
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1135 AbcC ABC-type metal io 100.0 8.2E-43 1.8E-47 266.3 14.2 142 1-143 99-243 (339)
2 COG1126 GlnQ ABC-type polar am 100.0 1.5E-42 3.3E-47 253.7 14.3 141 1-143 93-237 (240)
3 COG1125 OpuBA ABC-type proline 100.0 9.4E-41 2E-45 249.5 14.1 144 1-144 91-238 (309)
4 COG4175 ProV ABC-type proline/ 100.0 1.5E-39 3.3E-44 249.1 13.9 142 1-143 122-266 (386)
5 COG1124 DppF ABC-type dipeptid 100.0 5E-39 1.1E-43 238.7 14.8 143 2-144 101-244 (252)
6 COG1127 Ttg2A ABC-type transpo 100.0 3.8E-39 8.2E-44 239.0 13.7 143 1-143 101-246 (263)
7 COG1118 CysA ABC-type sulfate/ 100.0 7.5E-38 1.6E-42 238.9 12.9 141 1-142 93-238 (345)
8 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-37 2.7E-42 233.9 12.4 131 1-132 96-228 (235)
9 COG0444 DppD ABC-type dipeptid 100.0 3.8E-37 8.3E-42 236.7 15.1 126 19-144 128-256 (316)
10 COG1116 TauB ABC-type nitrate/ 100.0 2.3E-37 4.9E-42 231.0 13.4 123 1-124 88-214 (248)
11 COG3842 PotA ABC-type spermidi 100.0 2.4E-37 5.1E-42 242.7 11.7 142 1-143 93-238 (352)
12 COG1120 FepC ABC-type cobalami 100.0 1.4E-36 3E-41 229.6 13.7 131 1-132 92-228 (258)
13 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.4E-36 7.3E-41 226.7 14.9 129 1-132 93-227 (254)
14 TIGR02314 ABC_MetN D-methionin 100.0 4.2E-36 9.2E-41 236.8 16.1 141 1-142 98-241 (343)
15 COG1117 PstB ABC-type phosphat 100.0 8.8E-37 1.9E-41 223.2 11.1 140 1-142 103-248 (253)
16 COG1123 ATPase components of v 100.0 3.2E-36 6.9E-41 245.7 15.3 144 1-144 385-532 (539)
17 COG3839 MalK ABC-type sugar tr 100.0 2E-36 4.4E-41 236.3 13.6 142 1-143 91-235 (338)
18 COG1136 SalX ABC-type antimicr 100.0 3.9E-36 8.4E-41 223.3 14.4 121 1-122 99-221 (226)
19 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-36 2.8E-41 220.6 10.6 129 1-131 91-221 (245)
20 COG3638 ABC-type phosphate/pho 100.0 2.5E-36 5.4E-41 223.4 10.8 130 1-131 97-236 (258)
21 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-35 3.5E-40 234.7 16.1 142 1-143 92-236 (356)
22 PRK11432 fbpC ferric transport 100.0 2.4E-35 5.2E-40 233.3 16.0 142 1-143 94-238 (351)
23 TIGR03258 PhnT 2-aminoethylpho 100.0 2.1E-35 4.5E-40 234.4 15.7 142 1-143 95-240 (362)
24 COG3840 ThiQ ABC-type thiamine 100.0 2E-35 4.4E-40 211.6 13.8 132 1-133 87-220 (231)
25 TIGR01186 proV glycine betaine 100.0 2.6E-35 5.7E-40 233.7 15.9 141 1-142 87-230 (363)
26 TIGR03265 PhnT2 putative 2-ami 100.0 2.7E-35 5.8E-40 233.2 14.8 142 1-143 92-236 (353)
27 PRK15079 oligopeptide ABC tran 100.0 6.2E-35 1.3E-39 229.4 15.8 143 1-143 116-263 (331)
28 PRK09452 potA putrescine/sperm 100.0 6.9E-35 1.5E-39 232.3 16.0 142 1-143 102-246 (375)
29 COG1123 ATPase components of v 100.0 3.1E-35 6.8E-40 239.9 13.4 125 19-143 130-256 (539)
30 COG1131 CcmA ABC-type multidru 100.0 5.6E-35 1.2E-39 226.3 14.0 129 1-130 94-224 (293)
31 PRK10851 sulfate/thiosulfate t 100.0 1.2E-34 2.5E-39 229.6 15.5 142 1-143 90-238 (353)
32 cd03261 ABC_Org_Solvent_Resist 100.0 1E-34 2.2E-39 218.0 14.1 136 1-137 93-231 (235)
33 PRK11308 dppF dipeptide transp 100.0 1.9E-34 4.1E-39 226.4 16.2 125 19-143 131-256 (327)
34 PRK11607 potG putrescine trans 100.0 2.2E-34 4.7E-39 229.7 16.0 142 1-143 107-251 (377)
35 COG2884 FtsE Predicted ATPase 100.0 1.9E-34 4E-39 207.6 13.7 124 1-126 95-220 (223)
36 PRK11022 dppD dipeptide transp 100.0 3.2E-34 6.9E-39 225.1 15.5 125 19-143 128-255 (326)
37 PRK13651 cobalt transporter AT 100.0 3.4E-34 7.3E-39 223.1 15.2 131 1-132 122-254 (305)
38 PRK11000 maltose/maltodextrin 100.0 4E-34 8.6E-39 227.8 15.8 142 1-143 91-235 (369)
39 TIGR03415 ABC_choXWV_ATP choli 100.0 4.5E-34 9.7E-39 227.8 15.9 141 1-142 122-265 (382)
40 COG4172 ABC-type uncharacteriz 100.0 4.3E-34 9.3E-39 225.1 15.3 144 1-144 381-529 (534)
41 PRK09473 oppD oligopeptide tra 100.0 6E-34 1.3E-38 223.8 15.7 124 20-143 137-263 (330)
42 PRK13537 nodulation ABC transp 100.0 4E-34 8.7E-39 222.8 14.4 129 1-131 96-226 (306)
43 COG4598 HisP ABC-type histidin 100.0 3.4E-34 7.4E-39 205.4 12.7 141 1-143 109-253 (256)
44 PRK13634 cbiO cobalt transport 100.0 6.1E-34 1.3E-38 220.2 15.2 131 1-131 102-234 (290)
45 TIGR01187 potA spermidine/putr 100.0 8.6E-34 1.9E-38 222.5 15.9 141 1-142 58-201 (325)
46 COG0411 LivG ABC-type branched 100.0 2.5E-34 5.5E-39 213.7 11.8 141 1-143 95-249 (250)
47 PRK11153 metN DL-methionine tr 100.0 1.4E-33 3E-38 222.8 16.1 140 1-141 98-240 (343)
48 PRK10070 glycine betaine trans 100.0 1.3E-33 2.9E-38 226.3 16.3 141 1-142 122-265 (400)
49 PRK13637 cbiO cobalt transport 100.0 1.2E-33 2.7E-38 218.2 15.3 131 1-131 100-233 (287)
50 TIGR01188 drrA daunorubicin re 100.0 8.9E-34 1.9E-38 220.4 14.3 128 1-130 82-211 (302)
51 cd03296 ABC_CysA_sulfate_impor 100.0 2.3E-33 5.1E-38 211.2 15.8 140 1-141 90-236 (239)
52 COG4608 AppF ABC-type oligopep 100.0 8.7E-34 1.9E-38 214.1 13.4 126 19-144 86-212 (268)
53 PRK15093 antimicrobial peptide 100.0 2.4E-33 5.2E-38 220.4 16.4 124 20-143 134-260 (330)
54 PRK13643 cbiO cobalt transport 100.0 1.7E-33 3.6E-38 217.6 15.0 130 1-131 101-232 (288)
55 TIGR02769 nickel_nikE nickel i 100.0 3.2E-33 6.9E-38 213.6 15.8 142 1-142 106-250 (265)
56 TIGR02142 modC_ABC molybdenum 100.0 1.9E-33 4.1E-38 222.8 15.1 131 1-132 91-221 (354)
57 cd03265 ABC_DrrA DrrA is the A 100.0 2.3E-33 4.9E-38 208.8 14.6 129 1-130 89-219 (220)
58 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.4E-33 9.6E-38 213.3 15.8 142 1-143 118-262 (269)
59 PRK11144 modC molybdate transp 100.0 3.4E-33 7.4E-38 221.2 15.4 127 1-132 92-218 (352)
60 PRK14250 phosphate ABC transpo 100.0 9.6E-33 2.1E-37 208.2 17.0 141 1-143 92-233 (241)
61 PRK10261 glutathione transport 100.0 3.4E-33 7.3E-38 235.1 16.0 143 1-143 419-565 (623)
62 PRK13646 cbiO cobalt transport 100.0 4.4E-33 9.6E-38 215.0 15.1 131 1-131 102-234 (286)
63 cd03259 ABC_Carb_Solutes_like 100.0 4.5E-33 9.8E-38 206.2 14.6 124 1-125 88-213 (213)
64 COG4172 ABC-type uncharacteriz 100.0 2.1E-33 4.6E-38 221.2 13.2 127 18-144 131-260 (534)
65 cd03256 ABC_PhnC_transporter A 100.0 5.7E-33 1.2E-37 208.9 15.1 130 1-131 94-233 (241)
66 PRK13631 cbiO cobalt transport 100.0 5.3E-33 1.2E-37 217.6 15.5 130 1-131 133-264 (320)
67 PRK13647 cbiO cobalt transport 100.0 5.7E-33 1.2E-37 213.2 15.3 128 1-130 96-225 (274)
68 PRK13536 nodulation factor exp 100.0 3.7E-33 8E-38 220.0 14.6 129 1-131 130-260 (340)
69 PRK09536 btuD corrinoid ABC tr 100.0 6.5E-33 1.4E-37 222.5 15.9 130 1-132 93-228 (402)
70 PRK11831 putative ABC transpor 100.0 6.4E-33 1.4E-37 212.3 15.1 140 1-141 100-242 (269)
71 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.7E-33 1.9E-37 205.7 15.4 127 1-128 89-219 (220)
72 TIGR02315 ABC_phnC phosphonate 100.0 6.8E-33 1.5E-37 208.8 14.8 129 1-130 95-233 (243)
73 COG1137 YhbG ABC-type (unclass 100.0 3.4E-33 7.5E-38 202.6 12.5 139 1-142 95-237 (243)
74 PRK13641 cbiO cobalt transport 100.0 6.8E-33 1.5E-37 214.1 14.9 130 1-131 102-233 (287)
75 PRK13650 cbiO cobalt transport 100.0 8.1E-33 1.7E-37 212.9 15.3 129 1-131 98-228 (279)
76 PRK10771 thiQ thiamine transpo 100.0 1.4E-32 2.9E-37 206.2 16.1 142 1-144 87-230 (232)
77 cd03219 ABC_Mj1267_LivG_branch 100.0 5.7E-33 1.2E-37 208.4 13.9 129 1-131 91-231 (236)
78 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-32 2.8E-37 205.5 15.7 127 1-130 96-227 (227)
79 PRK15134 microcin C ABC transp 100.0 8.6E-33 1.9E-37 228.8 15.9 144 1-144 380-528 (529)
80 PRK13636 cbiO cobalt transport 100.0 1E-32 2.2E-37 212.7 15.2 130 1-131 99-230 (283)
81 cd03297 ABC_ModC_molybdenum_tr 100.0 8.9E-33 1.9E-37 204.8 14.2 124 1-125 91-214 (214)
82 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-32 2.7E-37 207.6 15.1 142 1-142 91-236 (242)
83 TIGR01288 nodI ATP-binding ABC 100.0 7.8E-33 1.7E-37 215.2 14.4 129 1-131 93-223 (303)
84 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-32 2.3E-37 204.1 14.3 124 1-125 88-213 (213)
85 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-32 2.9E-37 206.2 14.9 130 1-131 98-229 (233)
86 TIGR01184 ntrCD nitrate transp 100.0 1E-32 2.2E-37 206.9 14.2 129 1-130 70-202 (230)
87 cd03226 ABC_cobalt_CbiO_domain 100.0 1.8E-32 3.9E-37 202.0 14.9 118 1-122 88-205 (205)
88 COG4161 ArtP ABC-type arginine 100.0 8.4E-33 1.8E-37 195.5 12.3 139 1-141 98-239 (242)
89 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.4E-32 5.2E-37 202.1 15.0 124 1-125 86-211 (211)
90 PRK13645 cbiO cobalt transport 100.0 1.8E-32 3.9E-37 211.8 14.8 131 1-131 107-239 (289)
91 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-32 2.9E-37 204.1 13.4 119 1-121 96-216 (216)
92 cd03268 ABC_BcrA_bacitracin_re 100.0 2.3E-32 5.1E-37 201.7 14.1 121 1-125 88-208 (208)
93 PRK13652 cbiO cobalt transport 100.0 4E-32 8.6E-37 208.8 15.2 130 1-131 95-226 (277)
94 cd03218 ABC_YhbG The ABC trans 100.0 3.2E-32 7E-37 203.9 14.3 130 1-132 91-222 (232)
95 cd03257 ABC_NikE_OppD_transpor 100.0 4.5E-32 9.8E-37 202.3 15.1 125 1-125 100-228 (228)
96 PRK10619 histidine/lysine/argi 100.0 5.8E-32 1.3E-36 205.6 15.9 141 1-142 108-252 (257)
97 PRK11264 putative amino-acid A 100.0 5.4E-32 1.2E-36 204.8 15.5 139 1-141 101-243 (250)
98 TIGR02770 nickel_nikD nickel i 100.0 7.5E-32 1.6E-36 202.0 16.1 142 1-142 80-226 (230)
99 PRK14273 phosphate ABC transpo 100.0 6.2E-32 1.3E-36 205.1 15.8 141 1-143 103-250 (254)
100 PRK11701 phnK phosphonate C-P 100.0 8E-32 1.7E-36 205.0 16.4 123 20-142 129-252 (258)
101 PRK09493 glnQ glutamine ABC tr 100.0 5.8E-32 1.3E-36 203.6 15.5 130 1-132 93-225 (240)
102 PRK11300 livG leucine/isoleuci 100.0 4.7E-32 1E-36 205.7 15.0 112 20-132 132-243 (255)
103 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-32 5.2E-37 212.3 13.6 127 1-130 91-219 (301)
104 PRK10261 glutathione transport 100.0 2.2E-32 4.7E-37 230.2 14.3 131 1-131 122-257 (623)
105 TIGR00972 3a0107s01c2 phosphat 100.0 6E-32 1.3E-36 204.4 15.3 140 1-142 97-243 (247)
106 cd03224 ABC_TM1139_LivF_branch 100.0 3.4E-32 7.4E-37 202.4 13.6 128 1-130 91-219 (222)
107 PRK13649 cbiO cobalt transport 100.0 3.5E-32 7.7E-37 209.2 14.0 130 1-131 102-233 (280)
108 PRK14268 phosphate ABC transpo 100.0 8.9E-32 1.9E-36 204.8 16.0 140 1-142 108-253 (258)
109 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.3E-32 1.4E-36 203.0 15.0 140 1-142 90-233 (236)
110 cd03263 ABC_subfamily_A The AB 100.0 4.5E-32 9.8E-37 201.6 14.0 127 1-130 91-219 (220)
111 TIGR02323 CP_lyasePhnK phospho 100.0 1E-31 2.2E-36 203.7 16.2 125 19-143 125-250 (253)
112 PRK10418 nikD nickel transport 100.0 1.3E-31 2.7E-36 203.6 16.6 124 19-142 115-241 (254)
113 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.7E-32 8E-37 201.8 13.2 119 1-121 98-218 (218)
114 TIGR03005 ectoine_ehuA ectoine 100.0 8.4E-32 1.8E-36 204.1 15.4 141 1-142 103-247 (252)
115 PRK11247 ssuB aliphatic sulfon 100.0 1E-31 2.2E-36 204.7 15.8 123 1-128 97-219 (257)
116 COG4148 ModC ABC-type molybdat 100.0 1.1E-32 2.3E-37 208.6 10.2 127 1-132 92-218 (352)
117 cd03266 ABC_NatA_sodium_export 100.0 5.4E-32 1.2E-36 200.9 13.8 123 1-125 94-218 (218)
118 PRK14245 phosphate ABC transpo 100.0 1.3E-31 2.8E-36 202.9 16.1 140 1-142 99-245 (250)
119 PRK13638 cbiO cobalt transport 100.0 7.1E-32 1.5E-36 206.7 14.8 129 1-131 94-224 (271)
120 PRK10575 iron-hydroxamate tran 100.0 9.4E-32 2E-36 205.4 15.4 131 1-132 101-237 (265)
121 PRK11614 livF leucine/isoleuci 100.0 4.4E-32 9.4E-37 203.9 13.3 130 1-132 96-226 (237)
122 PRK13548 hmuV hemin importer A 100.0 9.4E-32 2E-36 204.8 15.3 131 1-132 92-230 (258)
123 PRK15112 antimicrobial peptide 100.0 9.3E-32 2E-36 205.7 15.3 123 20-142 127-250 (267)
124 PRK09984 phosphonate/organopho 100.0 1.3E-31 2.9E-36 204.2 16.0 129 1-130 102-240 (262)
125 COG0410 LivF ABC-type branched 100.0 9E-32 1.9E-36 198.7 14.5 142 1-143 94-236 (237)
126 PRK13640 cbiO cobalt transport 100.0 9.3E-32 2E-36 207.3 15.3 129 1-131 101-231 (282)
127 cd03235 ABC_Metallic_Cations A 100.0 8.8E-32 1.9E-36 199.3 14.5 121 1-124 86-212 (213)
128 PRK13633 cobalt transporter AT 100.0 1.1E-31 2.3E-36 206.7 15.1 129 1-131 102-232 (280)
129 PRK11124 artP arginine transpo 100.0 1.3E-31 2.8E-36 201.9 15.2 140 1-142 98-240 (242)
130 TIGR03740 galliderm_ABC gallid 100.0 1.9E-31 4.1E-36 198.8 15.7 125 1-129 86-210 (223)
131 PRK13639 cbiO cobalt transport 100.0 1E-31 2.3E-36 206.3 14.7 129 1-131 95-225 (275)
132 cd03264 ABC_drug_resistance_li 100.0 1.1E-31 2.3E-36 198.5 14.1 122 1-125 88-211 (211)
133 PRK10419 nikE nickel transport 100.0 2.2E-31 4.9E-36 203.8 16.1 123 20-142 129-251 (268)
134 PRK11248 tauB taurine transpor 100.0 1.9E-31 4.1E-36 202.9 15.6 126 1-127 86-215 (255)
135 PRK13635 cbiO cobalt transport 100.0 1.5E-31 3.2E-36 205.9 15.1 129 1-131 98-228 (279)
136 TIGR01277 thiQ thiamine ABC tr 100.0 2E-31 4.4E-36 197.5 15.2 125 1-126 86-212 (213)
137 TIGR03269 met_CoM_red_A2 methy 100.0 9.8E-32 2.1E-36 222.0 14.7 129 1-130 126-256 (520)
138 PRK13644 cbiO cobalt transport 100.0 1.9E-31 4.1E-36 204.8 15.0 128 1-131 94-223 (274)
139 PRK11629 lolD lipoprotein tran 100.0 1.8E-31 4E-36 200.2 14.6 124 1-126 103-228 (233)
140 PRK11231 fecE iron-dicitrate t 100.0 2.2E-31 4.8E-36 202.2 15.2 129 1-131 92-226 (255)
141 PRK10253 iron-enterobactin tra 100.0 2.2E-31 4.7E-36 203.4 15.2 130 1-131 97-232 (265)
142 cd03299 ABC_ModC_like Archeal 100.0 2.4E-31 5.3E-36 199.9 15.1 142 1-143 87-231 (235)
143 PRK14269 phosphate ABC transpo 100.0 2.9E-31 6.2E-36 200.7 15.6 141 1-143 94-242 (246)
144 PRK14242 phosphate transporter 100.0 3.6E-31 7.8E-36 200.7 16.1 130 1-132 102-237 (253)
145 PRK14247 phosphate ABC transpo 100.0 2.6E-31 5.5E-36 201.2 15.3 140 1-142 98-245 (250)
146 cd03269 ABC_putative_ATPase Th 100.0 1.5E-31 3.3E-36 197.6 13.7 122 1-124 86-209 (210)
147 COG4181 Predicted ABC-type tra 100.0 9.7E-32 2.1E-36 191.3 11.9 122 1-124 104-227 (228)
148 cd03300 ABC_PotA_N PotA is an 100.0 2.4E-31 5.2E-36 199.5 14.6 141 1-142 88-231 (232)
149 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-31 3.8E-36 199.7 13.8 128 1-130 91-219 (230)
150 PRK10895 lipopolysaccharide AB 100.0 2E-31 4.4E-36 200.7 14.0 130 1-132 94-226 (241)
151 cd03225 ABC_cobalt_CbiO_domain 100.0 1.6E-31 3.4E-36 197.5 13.2 118 1-120 92-211 (211)
152 TIGR02211 LolD_lipo_ex lipopro 100.0 2.3E-31 5E-36 197.9 14.1 120 1-122 99-220 (221)
153 PRK13642 cbiO cobalt transport 100.0 3.3E-31 7.1E-36 203.7 15.3 129 1-131 98-228 (277)
154 TIGR03411 urea_trans_UrtD urea 100.0 2.1E-31 4.6E-36 200.7 14.0 129 1-132 93-231 (242)
155 PRK14257 phosphate ABC transpo 100.0 5.1E-31 1.1E-35 207.1 16.4 140 1-142 178-324 (329)
156 PRK14251 phosphate ABC transpo 100.0 5.5E-31 1.2E-35 199.5 16.1 141 1-143 100-247 (251)
157 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.3E-31 5E-36 198.9 13.7 123 1-125 100-224 (224)
158 PRK14267 phosphate ABC transpo 100.0 3.5E-31 7.5E-36 200.8 14.8 140 1-142 101-248 (253)
159 PRK14239 phosphate transporter 100.0 6.8E-31 1.5E-35 199.0 16.2 140 1-142 101-247 (252)
160 PRK14270 phosphate ABC transpo 100.0 5.7E-31 1.2E-35 199.5 15.7 140 1-142 100-246 (251)
161 TIGR03771 anch_rpt_ABC anchore 100.0 4.4E-31 9.6E-36 197.2 14.8 129 1-132 67-201 (223)
162 PRK14274 phosphate ABC transpo 100.0 5.3E-31 1.1E-35 200.6 15.5 140 1-142 108-254 (259)
163 PRK13549 xylose transporter AT 100.0 2.2E-31 4.9E-36 219.3 14.4 130 1-131 357-493 (506)
164 TIGR03873 F420-0_ABC_ATP propo 100.0 4.2E-31 9.1E-36 200.8 14.7 129 1-131 91-225 (256)
165 TIGR01978 sufC FeS assembly AT 100.0 3.4E-31 7.3E-36 199.5 13.9 111 20-131 121-233 (243)
166 PRK14256 phosphate ABC transpo 100.0 7.3E-31 1.6E-35 199.0 15.8 140 1-142 101-247 (252)
167 cd03292 ABC_FtsE_transporter F 100.0 2.3E-31 4.9E-36 197.0 12.7 119 1-121 94-214 (214)
168 PRK10908 cell division protein 100.0 5.1E-31 1.1E-35 196.4 14.6 121 1-123 95-217 (222)
169 PRK10744 pstB phosphate transp 100.0 6.7E-31 1.4E-35 200.2 15.6 140 1-142 109-255 (260)
170 PRK13549 xylose transporter AT 100.0 3E-31 6.5E-36 218.6 14.6 129 1-131 98-231 (506)
171 PRK14248 phosphate ABC transpo 100.0 9.9E-31 2.1E-35 200.0 16.4 140 1-142 117-263 (268)
172 PRK10584 putative ABC transpor 100.0 5.8E-31 1.3E-35 196.7 14.6 121 1-123 104-226 (228)
173 TIGR02673 FtsE cell division A 100.0 2.5E-31 5.5E-36 196.9 12.5 118 1-120 95-214 (214)
174 PRK14244 phosphate ABC transpo 100.0 7.6E-31 1.6E-35 198.8 15.3 140 1-142 101-248 (251)
175 PRK14235 phosphate transporter 100.0 8.4E-31 1.8E-35 200.4 15.6 140 1-142 115-262 (267)
176 PRK11288 araG L-arabinose tran 100.0 3.8E-31 8.1E-36 217.8 14.6 130 1-131 347-484 (501)
177 PRK03695 vitamin B12-transport 100.0 7.4E-31 1.6E-35 198.8 15.1 130 1-132 85-222 (248)
178 PRK10762 D-ribose transporter 100.0 3.9E-31 8.4E-36 217.7 14.5 128 1-130 95-228 (501)
179 TIGR03269 met_CoM_red_A2 methy 100.0 3.5E-31 7.7E-36 218.7 14.2 130 1-130 381-515 (520)
180 PRK14259 phosphate ABC transpo 100.0 1.1E-30 2.4E-35 200.1 15.9 140 1-142 109-264 (269)
181 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-30 3.3E-35 195.8 16.2 142 1-143 88-232 (237)
182 PRK13632 cbiO cobalt transport 100.0 5.7E-31 1.2E-35 201.7 14.1 129 1-131 100-230 (271)
183 cd03267 ABC_NatA_like Similar 100.0 7.1E-31 1.5E-35 197.6 14.3 124 1-125 111-236 (236)
184 PRK15134 microcin C ABC transp 100.0 3.6E-31 7.9E-36 219.1 14.0 113 19-131 131-245 (529)
185 PRK14275 phosphate ABC transpo 100.0 1.2E-30 2.7E-35 201.4 15.9 140 1-142 135-281 (286)
186 PRK15439 autoinducer 2 ABC tra 100.0 6.6E-31 1.4E-35 216.8 15.2 127 1-131 102-228 (510)
187 PRK14241 phosphate transporter 100.0 1E-30 2.2E-35 198.9 15.1 140 1-142 101-253 (258)
188 PRK14249 phosphate ABC transpo 100.0 1.7E-30 3.7E-35 196.9 16.3 141 1-143 100-247 (251)
189 PRK13648 cbiO cobalt transport 100.0 9.3E-31 2E-35 200.3 14.7 130 1-132 100-231 (269)
190 PRK14258 phosphate ABC transpo 100.0 2E-30 4.3E-35 197.8 16.4 132 1-132 103-245 (261)
191 PRK14253 phosphate ABC transpo 100.0 2.5E-30 5.4E-35 195.7 16.6 140 1-142 98-244 (249)
192 PRK13547 hmuV hemin importer A 100.0 1.2E-30 2.7E-35 200.2 15.1 131 1-132 99-244 (272)
193 COG4604 CeuD ABC-type enteroch 100.0 1.2E-31 2.7E-36 194.3 8.9 131 1-132 91-225 (252)
194 PRK14240 phosphate transporter 100.0 1.9E-30 4E-35 196.5 15.8 140 1-142 99-245 (250)
195 PRK09700 D-allose transporter 100.0 7.4E-31 1.6E-35 216.3 14.8 129 1-131 96-233 (510)
196 cd03262 ABC_HisP_GlnQ_permease 100.0 9E-31 1.9E-35 193.7 13.1 119 1-121 92-213 (213)
197 COG4152 ABC-type uncharacteriz 100.0 2.3E-31 4.9E-36 198.2 9.4 130 1-132 88-219 (300)
198 PRK14243 phosphate transporter 100.0 3.1E-30 6.8E-35 197.0 15.8 140 1-142 106-259 (264)
199 PRK14261 phosphate ABC transpo 100.0 3.1E-30 6.8E-35 195.6 15.6 140 1-142 102-248 (253)
200 PRK10762 D-ribose transporter 100.0 1.6E-30 3.4E-35 214.1 14.9 130 1-131 346-483 (501)
201 PRK10938 putative molybdenum t 100.0 1.4E-30 3.1E-35 213.7 14.4 111 19-131 113-223 (490)
202 PRK14262 phosphate ABC transpo 100.0 4.3E-30 9.2E-35 194.5 15.9 140 1-142 99-245 (250)
203 PRK10982 galactose/methyl gala 100.0 1.6E-30 3.4E-35 213.6 14.6 128 1-130 89-221 (491)
204 PRK14255 phosphate ABC transpo 100.0 5.1E-30 1.1E-34 194.3 16.2 130 1-132 101-236 (252)
205 PRK13545 tagH teichoic acids e 100.0 2.3E-30 4.9E-35 212.1 15.3 130 1-132 101-232 (549)
206 PRK09700 D-allose transporter 100.0 1.8E-30 3.9E-35 214.1 14.8 126 1-127 357-493 (510)
207 PRK13546 teichoic acids export 100.0 2.7E-30 5.9E-35 197.6 14.6 130 1-132 101-232 (264)
208 PRK14272 phosphate ABC transpo 100.0 3.4E-30 7.4E-35 195.1 15.0 140 1-142 101-247 (252)
209 TIGR02633 xylG D-xylose ABC tr 100.0 1.7E-30 3.8E-35 213.7 14.5 129 1-130 94-228 (500)
210 PRK14236 phosphate transporter 100.0 5.9E-30 1.3E-34 196.2 16.4 130 1-132 121-256 (272)
211 PRK14254 phosphate ABC transpo 100.0 5.4E-30 1.2E-34 197.8 15.9 140 1-142 135-280 (285)
212 PRK15439 autoinducer 2 ABC tra 100.0 2.4E-30 5.1E-35 213.5 14.7 111 20-131 381-491 (510)
213 PRK14260 phosphate ABC transpo 100.0 4.9E-30 1.1E-34 195.3 15.3 140 1-142 103-254 (259)
214 PRK14238 phosphate transporter 100.0 6.3E-30 1.4E-34 196.0 15.9 140 1-142 120-266 (271)
215 PRK14237 phosphate transporter 100.0 6.5E-30 1.4E-34 195.5 15.9 139 1-141 116-261 (267)
216 PRK14265 phosphate ABC transpo 100.0 6.5E-30 1.4E-34 196.3 15.9 140 1-142 116-269 (274)
217 COG4525 TauB ABC-type taurine 100.0 1.5E-30 3.3E-35 188.5 11.5 127 1-128 90-220 (259)
218 PRK10247 putative ABC transpor 100.0 3.1E-30 6.7E-35 192.8 13.1 126 1-127 96-222 (225)
219 PRK11174 cysteine/glutathione 100.0 3.5E-30 7.5E-35 215.3 14.7 127 1-134 438-574 (588)
220 PRK14263 phosphate ABC transpo 100.0 1.1E-29 2.3E-34 193.9 15.9 140 1-142 104-256 (261)
221 PRK14271 phosphate ABC transpo 100.0 8.9E-30 1.9E-34 195.8 15.5 140 1-142 116-262 (276)
222 TIGR02633 xylG D-xylose ABC tr 100.0 4.3E-30 9.3E-35 211.3 14.6 129 1-130 355-490 (500)
223 cd03234 ABCG_White The White s 100.0 6.4E-30 1.4E-34 191.0 13.5 123 1-125 97-226 (226)
224 COG4988 CydD ABC-type transpor 100.0 6.4E-30 1.4E-34 208.6 14.5 129 1-137 410-548 (559)
225 PRK14252 phosphate ABC transpo 100.0 2.4E-29 5.3E-34 192.1 16.5 140 1-142 114-260 (265)
226 PRK14266 phosphate ABC transpo 100.0 2.4E-29 5.1E-34 190.4 16.2 140 1-142 99-245 (250)
227 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-29 3.1E-34 194.6 15.0 123 1-132 92-225 (275)
228 COG4559 ABC-type hemin transpo 100.0 8.2E-30 1.8E-34 186.5 12.8 130 1-132 91-230 (259)
229 COG2274 SunT ABC-type bacterio 100.0 5.2E-30 1.1E-34 217.0 13.5 126 1-133 562-697 (709)
230 PRK14246 phosphate ABC transpo 100.0 2.8E-29 6E-34 191.2 16.1 139 1-141 106-251 (257)
231 PRK11288 araG L-arabinose tran 100.0 1.4E-29 2.9E-34 208.5 15.3 125 1-127 95-224 (501)
232 KOG0055 Multidrug/pheromone ex 100.0 9.4E-30 2E-34 221.1 13.8 126 1-133 442-577 (1228)
233 cd03214 ABC_Iron-Siderophores_ 100.0 2.3E-29 5E-34 182.3 13.8 99 25-124 81-179 (180)
234 cd03252 ABCC_Hemolysin The ABC 100.0 3.6E-29 7.7E-34 188.0 15.2 96 35-133 131-226 (237)
235 PRK15056 manganese/iron transp 100.0 2.5E-29 5.4E-34 192.8 14.5 109 20-131 121-229 (272)
236 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.9E-29 6.2E-34 190.2 14.7 118 1-121 77-194 (246)
237 CHL00131 ycf16 sulfate ABC tra 100.0 2.9E-29 6.2E-34 190.1 14.7 109 20-129 128-238 (252)
238 PRK14264 phosphate ABC transpo 100.0 3.6E-29 7.7E-34 194.9 15.1 111 20-132 175-289 (305)
239 cd03245 ABCC_bacteriocin_expor 100.0 2.8E-29 6E-34 186.6 13.8 116 1-124 93-219 (220)
240 TIGR02982 heterocyst_DevA ABC 100.0 2.3E-29 5.1E-34 187.3 13.4 119 1-121 98-219 (220)
241 PRK09580 sufC cysteine desulfu 100.0 5E-29 1.1E-33 188.2 14.7 109 21-130 123-233 (248)
242 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-29 3.4E-34 189.5 11.9 128 1-132 91-225 (234)
243 PRK09544 znuC high-affinity zi 100.0 3.6E-29 7.9E-34 190.1 13.8 111 19-131 98-208 (251)
244 COG4987 CydC ABC-type transpor 100.0 2.9E-29 6.3E-34 203.0 13.6 126 1-133 427-562 (573)
245 TIGR01257 rim_protein retinal- 100.0 2.6E-29 5.6E-34 229.2 14.5 128 1-130 2028-2157(2272)
246 COG1132 MdlB ABC-type multidru 100.0 6.1E-29 1.3E-33 207.2 15.5 127 1-134 418-554 (567)
247 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.3E-29 9.4E-34 187.7 13.1 95 35-132 132-226 (238)
248 PRK10982 galactose/methyl gala 100.0 4.7E-29 1E-33 204.9 14.1 110 20-130 369-478 (491)
249 KOG0058 Peptide exporter, ABC 100.0 3.7E-29 7.9E-34 208.0 13.2 130 1-137 557-696 (716)
250 PRK10790 putative multidrug tr 100.0 8.2E-29 1.8E-33 207.3 15.5 129 1-137 430-568 (592)
251 PRK11160 cysteine/glutathione 100.0 1.1E-28 2.3E-33 206.1 16.0 126 1-134 429-564 (574)
252 PRK11176 lipid transporter ATP 100.0 1.1E-28 2.5E-33 205.9 16.0 131 1-137 432-572 (582)
253 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.1E-28 2.3E-33 209.7 16.0 124 1-134 542-675 (686)
254 cd03253 ABCC_ATM1_transporter 100.0 6.9E-29 1.5E-33 186.3 13.1 95 35-132 130-224 (236)
255 cd03254 ABCC_Glucan_exporter_l 100.0 1.3E-28 2.8E-33 184.1 13.9 93 36-131 133-225 (229)
256 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-28 2.7E-33 209.9 15.5 124 1-133 568-701 (710)
257 TIGR01257 rim_protein retinal- 100.0 6.6E-29 1.4E-33 226.6 14.4 127 1-130 1019-1147(2272)
258 PRK13409 putative ATPase RIL; 100.0 1.2E-28 2.7E-33 206.1 14.9 122 1-127 416-537 (590)
259 KOG0055 Multidrug/pheromone ex 100.0 5.4E-29 1.2E-33 216.4 12.9 128 1-135 1079-1216(1228)
260 cd03270 ABC_UvrA_I The excisio 100.0 2.3E-28 5E-33 183.1 13.9 101 23-125 118-226 (226)
261 PRK15177 Vi polysaccharide exp 100.0 1.8E-28 3.8E-33 182.2 13.2 126 1-130 65-190 (213)
262 COG1129 MglA ABC-type sugar tr 100.0 2.5E-28 5.4E-33 198.3 14.5 128 1-130 99-233 (500)
263 TIGR03375 type_I_sec_LssB type 100.0 2.5E-28 5.4E-33 207.6 15.1 124 1-131 554-687 (694)
264 TIGR02324 CP_lyasePhnL phospho 100.0 2.9E-28 6.3E-33 181.7 13.2 115 1-116 106-222 (224)
265 TIGR02203 MsbA_lipidA lipid A 100.0 5E-28 1.1E-32 201.5 15.7 128 1-135 421-559 (571)
266 TIGR03608 L_ocin_972_ABC putat 100.0 3E-28 6.4E-33 179.3 12.7 113 1-116 92-206 (206)
267 cd03271 ABC_UvrA_II The excisi 100.0 6.1E-28 1.3E-32 184.1 14.8 121 1-127 132-261 (261)
268 PRK13657 cyclic beta-1,2-gluca 100.0 4.6E-28 9.9E-33 202.7 15.4 126 1-133 424-559 (588)
269 cd03244 ABCC_MRP_domain2 Domai 100.0 5.2E-28 1.1E-32 179.9 14.1 117 1-126 93-220 (221)
270 PLN03211 ABC transporter G-25; 100.0 1.9E-28 4.2E-33 207.1 12.9 128 1-130 156-294 (659)
271 PRK13538 cytochrome c biogenes 100.0 3.5E-28 7.7E-33 179.2 12.4 113 1-116 90-202 (204)
272 PRK13543 cytochrome c biogenes 100.0 4.4E-28 9.6E-33 179.9 13.0 115 1-118 98-212 (214)
273 TIGR00955 3a01204 The Eye Pigm 100.0 2.3E-28 5.1E-33 205.6 12.7 128 1-130 115-254 (617)
274 TIGR01846 type_I_sec_HlyB type 100.0 9E-28 1.9E-32 204.3 16.2 130 1-137 546-685 (694)
275 PTZ00265 multidrug resistance 100.0 5.8E-28 1.3E-32 217.6 15.6 138 1-143 1311-1463(1466)
276 TIGR00958 3a01208 Conjugate Tr 100.0 6E-28 1.3E-32 205.9 14.9 124 1-133 570-703 (711)
277 cd03248 ABCC_TAP TAP, the Tran 100.0 3.8E-28 8.2E-33 181.3 11.9 117 1-121 103-226 (226)
278 PRK15064 ABC transporter ATP-b 100.0 5.5E-28 1.2E-32 200.2 13.9 124 1-131 400-524 (530)
279 TIGR01193 bacteriocin_ABC ABC- 100.0 6.9E-28 1.5E-32 205.3 14.8 126 1-133 563-698 (708)
280 PRK10789 putative multidrug tr 100.0 9.3E-28 2E-32 200.3 15.3 126 1-133 404-539 (569)
281 TIGR01192 chvA glucan exporter 100.0 1.3E-27 2.7E-32 200.1 15.9 127 1-134 424-560 (585)
282 PRK10938 putative molybdenum t 100.0 4.7E-28 1E-32 198.8 12.9 107 20-126 379-486 (490)
283 COG4619 ABC-type uncharacteriz 100.0 4.7E-28 1E-32 172.0 10.9 121 1-121 92-212 (223)
284 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.1E-27 4.5E-32 175.2 14.3 88 37-127 120-207 (207)
285 PLN03232 ABC transporter C fam 100.0 1.4E-27 2.9E-32 216.0 15.9 126 1-134 1325-1460(1495)
286 PLN03130 ABC transporter C fam 100.0 1.5E-27 3.2E-32 216.6 15.6 125 1-133 1328-1462(1622)
287 TIGR01842 type_I_sec_PrtD type 100.0 1.9E-27 4E-32 197.5 14.4 125 1-131 407-541 (544)
288 cd03231 ABC_CcmA_heme_exporter 100.0 1.8E-27 4E-32 175.1 12.8 110 1-116 89-198 (201)
289 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-27 4.5E-32 197.6 14.4 126 1-130 402-529 (552)
290 TIGR02204 MsbA_rel ABC transpo 99.9 3.7E-27 8.1E-32 196.5 15.4 126 1-133 429-564 (576)
291 PRK11819 putative ABC transpor 99.9 2.2E-27 4.7E-32 197.7 13.9 127 1-131 404-532 (556)
292 cd03233 ABC_PDR_domain1 The pl 99.9 2.7E-27 5.8E-32 174.4 12.6 90 36-125 112-202 (202)
293 KOG0057 Mitochondrial Fe/S clu 99.9 2.8E-27 6.1E-32 191.8 13.8 133 1-141 440-582 (591)
294 cd03291 ABCC_CFTR1 The CFTR su 99.9 8.9E-27 1.9E-31 179.7 15.9 101 38-141 155-256 (282)
295 cd03238 ABC_UvrA The excision 99.9 4.3E-27 9.4E-32 170.1 13.1 98 23-122 68-167 (176)
296 cd03216 ABC_Carb_Monos_I This 99.9 3.6E-27 7.8E-32 168.5 12.2 81 42-123 82-162 (163)
297 PRK15064 ABC transporter ATP-b 99.9 3E-27 6.5E-32 195.8 13.3 108 20-131 133-241 (530)
298 cd03215 ABC_Carb_Monos_II This 99.9 2.1E-27 4.6E-32 172.3 10.9 78 43-121 105-182 (182)
299 cd03288 ABCC_SUR2 The SUR doma 99.9 4.8E-27 1E-31 178.7 13.2 95 36-133 150-244 (257)
300 cd03217 ABC_FeS_Assembly ABC-t 99.9 4.3E-27 9.3E-32 173.0 12.5 90 38-128 100-190 (200)
301 TIGR01166 cbiO cobalt transpor 99.9 1.7E-27 3.7E-32 173.6 10.2 103 1-105 85-189 (190)
302 COG4107 PhnK ABC-type phosphon 99.9 7.1E-27 1.5E-31 167.2 13.0 123 19-141 128-251 (258)
303 PRK10535 macrolide transporter 99.9 1.2E-26 2.7E-31 196.1 16.3 128 1-131 102-231 (648)
304 cd03236 ABC_RNaseL_inhibitor_d 99.9 8.6E-27 1.9E-31 177.5 13.0 102 20-124 118-219 (255)
305 PRK13539 cytochrome c biogenes 99.9 8.2E-27 1.8E-31 172.3 12.3 112 1-118 89-200 (207)
306 COG3845 ABC-type uncharacteriz 99.9 9.3E-27 2E-31 187.0 13.2 124 1-126 95-223 (501)
307 PTZ00265 multidrug resistance 99.9 1.3E-26 2.9E-31 208.8 15.7 99 19-119 546-655 (1466)
308 COG4674 Uncharacterized ABC-ty 99.9 4.4E-27 9.6E-32 170.4 10.1 130 1-133 97-236 (249)
309 PRK10636 putative ABC transpor 99.9 7.2E-27 1.6E-31 197.2 13.0 108 19-130 407-515 (638)
310 PTZ00243 ABC transporter; Prov 99.9 1.5E-26 3.3E-31 209.5 15.9 125 1-133 1399-1534(1560)
311 cd03250 ABCC_MRP_domain1 Domai 99.9 1.8E-26 4E-31 169.9 13.0 83 36-120 121-204 (204)
312 cd03232 ABC_PDR_domain2 The pl 99.9 1E-26 2.2E-31 170.0 11.3 83 42-125 108-192 (192)
313 cd03213 ABCG_EPDR ABCG transpo 99.9 1.5E-26 3.3E-31 169.4 11.8 83 42-125 111-194 (194)
314 TIGR00957 MRP_assoc_pro multi 99.9 2.4E-26 5.2E-31 208.2 15.4 126 1-134 1375-1510(1522)
315 PLN03140 ABC transporter G fam 99.9 1.5E-26 3.2E-31 208.2 13.6 126 1-128 969-1106(1470)
316 cd03230 ABC_DR_subfamily_A Thi 99.9 1.3E-26 2.9E-31 166.8 10.8 78 43-121 96-173 (173)
317 cd03290 ABCC_SUR1_N The SUR do 99.9 3.2E-26 7E-31 170.1 13.2 113 1-120 94-218 (218)
318 PRK11147 ABC transporter ATPas 99.9 3.3E-26 7.1E-31 193.2 14.8 126 1-130 399-526 (635)
319 COG4586 ABC-type uncharacteriz 99.9 1.3E-26 2.7E-31 175.1 10.8 110 20-130 135-244 (325)
320 cd03247 ABCC_cytochrome_bd The 99.9 2E-26 4.2E-31 166.6 11.4 83 40-125 96-178 (178)
321 cd03246 ABCC_Protease_Secretio 99.9 1.5E-26 3.2E-31 166.6 10.6 77 43-121 97-173 (173)
322 PLN03073 ABC transporter F fam 99.9 2.8E-26 6E-31 195.4 13.9 107 19-129 604-711 (718)
323 TIGR00956 3a01205 Pleiotropic 99.9 1.7E-26 3.7E-31 207.6 12.9 127 1-129 852-990 (1394)
324 cd03229 ABC_Class3 This class 99.9 2.6E-26 5.7E-31 166.0 11.3 78 43-120 101-178 (178)
325 TIGR01189 ccmA heme ABC export 99.9 2.5E-26 5.5E-31 168.5 11.1 109 1-115 89-197 (198)
326 PRK10636 putative ABC transpor 99.9 2.8E-26 6.1E-31 193.6 13.0 108 19-130 126-234 (638)
327 PRK11819 putative ABC transpor 99.9 3.3E-26 7.2E-31 190.6 12.6 105 20-130 143-248 (556)
328 PLN03232 ABC transporter C fam 99.9 5.9E-26 1.3E-30 205.4 15.0 124 1-132 694-828 (1495)
329 cd03222 ABC_RNaseL_inhibitor T 99.9 3.5E-26 7.6E-31 165.5 10.8 87 43-129 72-160 (177)
330 TIGR00956 3a01205 Pleiotropic 99.9 3.1E-26 6.7E-31 206.0 12.7 129 1-130 154-298 (1394)
331 TIGR01271 CFTR_protein cystic 99.9 9.5E-26 2.1E-30 204.0 15.8 124 1-132 1307-1440(1490)
332 PRK13409 putative ATPase RIL; 99.9 7E-26 1.5E-30 189.6 13.8 97 20-119 191-287 (590)
333 PLN03130 ABC transporter C fam 99.9 1.1E-25 2.4E-30 204.4 15.4 124 1-132 694-828 (1622)
334 PLN03073 ABC transporter F fam 99.9 1.3E-25 2.8E-30 191.3 13.7 107 20-130 322-429 (718)
335 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 9.8E-26 2.1E-30 187.6 12.6 104 21-130 142-246 (552)
336 COG1129 MglA ABC-type sugar tr 99.9 1.1E-25 2.4E-30 182.9 12.6 129 1-130 353-488 (500)
337 PRK11147 ABC transporter ATPas 99.9 1.2E-25 2.6E-30 189.7 12.9 105 19-130 136-241 (635)
338 TIGR01194 cyc_pep_trnsptr cycl 99.9 3.9E-25 8.4E-30 184.1 14.7 105 18-125 441-552 (555)
339 PRK10522 multidrug transporter 99.9 4.4E-25 9.6E-30 183.5 14.8 105 19-125 422-531 (547)
340 COG1119 ModF ABC-type molybden 99.9 2E-25 4.3E-30 166.4 11.4 106 20-126 150-256 (257)
341 cd03223 ABCD_peroxisomal_ALDP 99.9 2.5E-25 5.5E-30 159.4 11.5 76 39-119 88-163 (166)
342 PRK13541 cytochrome c biogenes 99.9 1.6E-25 3.5E-30 164.0 10.3 107 1-113 86-192 (195)
343 PRK00349 uvrA excinuclease ABC 99.9 5.4E-25 1.2E-29 191.0 15.0 136 1-142 793-937 (943)
344 PRK13540 cytochrome c biogenes 99.9 2.6E-25 5.7E-30 163.4 10.9 108 1-114 90-197 (200)
345 TIGR01271 CFTR_protein cystic 99.9 6E-25 1.3E-29 198.8 14.8 93 37-132 543-636 (1490)
346 COG1101 PhnK ABC-type uncharac 99.9 8.3E-25 1.8E-29 160.6 12.6 129 1-129 98-235 (263)
347 cd03228 ABCC_MRP_Like The MRP 99.9 3.1E-25 6.8E-30 159.4 10.1 75 43-120 97-171 (171)
348 TIGR00957 MRP_assoc_pro multi 99.9 8.2E-25 1.8E-29 198.3 14.8 126 1-132 714-850 (1522)
349 PLN03140 ABC transporter G fam 99.9 2.2E-25 4.8E-30 200.7 10.9 108 22-130 312-425 (1470)
350 TIGR02857 CydD thiol reductant 99.9 7.6E-25 1.6E-29 181.2 13.1 109 1-116 411-529 (529)
351 KOG0061 Transporter, ABC super 99.9 2.3E-25 5E-30 187.1 9.6 128 1-130 120-258 (613)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.7E-25 1.7E-29 153.6 10.6 77 40-120 68-144 (144)
353 COG4167 SapF ABC-type antimicr 99.9 1.8E-24 4E-29 155.9 12.3 124 19-142 126-250 (267)
354 KOG0059 Lipid exporter ABCA1 a 99.9 7.4E-25 1.6E-29 190.4 11.7 129 1-131 656-786 (885)
355 PRK00349 uvrA excinuclease ABC 99.9 9.9E-25 2.1E-29 189.4 11.8 105 24-131 471-584 (943)
356 TIGR00954 3a01203 Peroxysomal 99.9 2.7E-24 5.9E-29 182.1 14.2 111 1-117 530-652 (659)
357 PRK00635 excinuclease ABC subu 99.9 2.4E-24 5.3E-29 194.4 14.1 128 1-132 764-906 (1809)
358 TIGR00630 uvra excinuclease AB 99.9 2.1E-24 4.6E-29 187.0 12.8 104 25-131 470-582 (924)
359 PTZ00243 ABC transporter; Prov 99.9 5.2E-24 1.1E-28 193.2 14.8 123 1-131 736-869 (1560)
360 TIGR00630 uvra excinuclease AB 99.9 7.3E-24 1.6E-28 183.7 14.1 108 21-130 807-923 (924)
361 KOG0054 Multidrug resistance-a 99.9 6.1E-24 1.3E-28 188.0 13.0 125 1-132 597-731 (1381)
362 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.1E-23 2.4E-28 149.2 11.2 78 42-120 80-157 (157)
363 COG4618 ArpD ABC-type protease 99.9 1.2E-23 2.7E-28 169.6 11.8 91 39-131 469-559 (580)
364 COG1134 TagH ABC-type polysacc 99.9 1.7E-23 3.6E-28 156.0 11.7 129 1-131 105-235 (249)
365 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.7E-23 3.8E-28 155.3 11.6 93 26-120 108-210 (213)
366 TIGR02868 CydC thiol reductant 99.9 8.5E-24 1.8E-28 175.0 11.0 97 1-103 423-529 (529)
367 COG5265 ATM1 ABC-type transpor 99.9 2.2E-23 4.8E-28 165.2 10.8 92 39-133 396-487 (497)
368 PRK00635 excinuclease ABC subu 99.9 4.3E-23 9.4E-28 186.4 13.1 104 25-131 459-571 (1809)
369 COG0488 Uup ATPase components 99.9 5.2E-23 1.1E-27 169.8 11.0 105 20-130 133-238 (530)
370 cd03278 ABC_SMC_barmotin Barmo 99.9 1.5E-22 3.3E-27 148.8 10.7 92 20-118 95-190 (197)
371 KOG0056 Heavy metal exporter H 99.9 5.2E-23 1.1E-27 166.0 8.3 92 38-132 670-761 (790)
372 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.7E-22 3.7E-27 148.7 9.2 96 20-120 91-192 (198)
373 COG0396 sufC Cysteine desulfur 99.9 1.3E-21 2.7E-26 144.9 13.1 108 19-128 120-230 (251)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.3E-21 2.8E-26 148.5 12.7 97 18-117 123-242 (251)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.6E-21 1.2E-25 143.9 12.7 79 36-117 152-234 (243)
376 COG4133 CcmA ABC-type transpor 99.9 1.6E-21 3.6E-26 140.4 9.1 103 1-106 91-193 (209)
377 COG0488 Uup ATPase components 99.9 4.1E-21 8.9E-26 158.6 12.7 106 19-129 416-522 (530)
378 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.3E-21 9.3E-26 145.4 11.8 98 19-118 111-233 (247)
379 cd03240 ABC_Rad50 The catalyti 99.9 2.8E-21 6.2E-26 142.7 10.2 83 36-119 109-198 (204)
380 KOG0054 Multidrug resistance-a 99.9 3.9E-21 8.5E-26 170.4 12.3 117 18-137 1241-1367(1381)
381 COG4170 SapD ABC-type antimicr 99.9 1.2E-21 2.6E-26 144.2 7.5 126 18-143 132-260 (330)
382 COG4136 ABC-type uncharacteriz 99.9 1.2E-21 2.6E-26 137.3 6.4 113 1-116 93-207 (213)
383 cd03274 ABC_SMC4_euk Eukaryoti 99.8 3.9E-21 8.5E-26 142.8 8.5 92 23-118 109-204 (212)
384 KOG0062 ATPase component of AB 99.8 1.8E-20 4E-25 151.5 11.2 102 18-123 458-559 (582)
385 COG4778 PhnL ABC-type phosphon 99.8 1.4E-20 3E-25 134.3 8.8 99 19-118 129-227 (235)
386 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.4E-20 3.1E-25 139.8 8.1 86 35-120 119-211 (213)
387 COG4138 BtuD ABC-type cobalami 99.8 1.8E-21 3.8E-26 139.5 2.4 111 20-132 104-221 (248)
388 COG3845 ABC-type uncharacteriz 99.8 3.5E-20 7.5E-25 149.3 10.0 129 1-130 353-490 (501)
389 KOG0927 Predicted transporter 99.8 1.2E-19 2.7E-24 147.4 9.6 107 21-130 200-307 (614)
390 cd03239 ABC_SMC_head The struc 99.8 6.6E-19 1.4E-23 127.6 10.7 74 43-118 95-172 (178)
391 KOG0065 Pleiotropic drug resis 99.8 2.7E-20 5.8E-25 163.1 3.8 127 1-129 880-1018(1391)
392 KOG0062 ATPase component of AB 99.8 1.5E-19 3.3E-24 146.1 6.6 106 21-130 176-283 (582)
393 COG0178 UvrA Excinuclease ATPa 99.8 1.7E-18 3.7E-23 146.1 11.4 121 21-143 801-930 (935)
394 cd03241 ABC_RecN RecN ATPase i 99.8 1E-18 2.2E-23 134.4 9.2 77 42-121 170-250 (276)
395 COG1245 Predicted ATPase, RNas 99.8 8.9E-19 1.9E-23 140.4 8.9 93 24-117 438-530 (591)
396 KOG0927 Predicted transporter 99.8 4.2E-19 9.1E-24 144.3 7.1 107 18-128 485-592 (614)
397 TIGR00618 sbcc exonuclease Sbc 99.8 3.2E-18 7E-23 151.4 11.3 84 35-119 943-1036(1042)
398 COG1245 Predicted ATPase, RNas 99.8 5.8E-18 1.3E-22 135.8 10.1 95 22-118 194-288 (591)
399 TIGR00634 recN DNA repair prot 99.7 5.7E-18 1.2E-22 141.5 10.0 77 41-120 439-519 (563)
400 cd03227 ABC_Class2 ABC-type Cl 99.7 1.4E-17 3E-22 118.8 10.0 76 41-118 76-155 (162)
401 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.7E-17 3.6E-22 122.1 8.6 88 35-125 84-172 (200)
402 PHA02562 46 endonuclease subun 99.7 1.5E-17 3.3E-22 138.5 8.0 80 38-121 464-555 (562)
403 PRK10869 recombination and rep 99.7 4.7E-17 1E-21 135.7 10.7 76 42-120 430-509 (553)
404 PRK03918 chromosome segregatio 99.7 1.1E-16 2.4E-21 139.3 10.4 80 37-118 783-868 (880)
405 PRK01156 chromosome segregatio 99.7 5.2E-16 1.1E-20 135.6 13.2 79 38-117 797-883 (895)
406 PRK10246 exonuclease subunit S 99.7 2.3E-16 5.1E-21 139.6 11.1 82 36-118 943-1032(1047)
407 COG0178 UvrA Excinuclease ATPa 99.7 1.5E-15 3.3E-20 128.5 12.4 116 26-143 465-588 (935)
408 COG4178 ABC-type uncharacteriz 99.7 6.7E-16 1.4E-20 128.3 9.8 111 1-117 471-587 (604)
409 TIGR02168 SMC_prok_B chromosom 99.6 5.8E-16 1.3E-20 137.2 8.2 79 36-117 1083-1165(1179)
410 TIGR00606 rad50 rad50. This fa 99.6 1.2E-15 2.6E-20 137.6 9.6 72 39-110 1196-1277(1311)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.6 7.3E-16 1.6E-20 115.3 6.8 96 24-126 75-175 (222)
412 cd03242 ABC_RecF RecF is a rec 99.6 2.3E-15 4.9E-20 115.5 7.4 77 40-121 181-269 (270)
413 KOG0066 eIF2-interacting prote 99.6 2.7E-15 5.8E-20 120.7 7.4 99 19-121 681-779 (807)
414 KOG0066 eIF2-interacting prote 99.6 5.2E-16 1.1E-20 124.7 3.0 100 19-122 389-488 (807)
415 PF00005 ABC_tran: ABC transpo 99.6 5E-15 1.1E-19 102.1 6.3 51 20-71 83-137 (137)
416 TIGR02169 SMC_prok_A chromosom 99.6 9.1E-15 2E-19 129.9 8.7 79 37-118 1069-1151(1164)
417 KOG2355 Predicted ABC-type tra 99.5 1.5E-14 3.3E-19 106.3 6.8 103 20-125 128-230 (291)
418 KOG0065 Pleiotropic drug resis 99.5 7.6E-15 1.6E-19 129.3 5.5 130 1-130 205-349 (1391)
419 PRK02224 chromosome segregatio 99.5 3.8E-14 8.2E-19 123.7 9.6 79 39-119 778-869 (880)
420 COG4615 PvdE ABC-type sideroph 99.5 1.8E-14 3.9E-19 114.4 6.8 106 18-124 420-529 (546)
421 PRK00064 recF recombination pr 99.5 7.2E-14 1.6E-18 111.3 8.8 78 40-121 271-359 (361)
422 cd03243 ABC_MutS_homologs The 99.5 9.7E-14 2.1E-18 102.2 8.7 89 38-129 87-176 (202)
423 smart00534 MUTSac ATPase domai 99.4 5.8E-13 1.3E-17 96.9 8.5 93 26-121 46-139 (185)
424 KOG0060 Long-chain acyl-CoA tr 99.4 1.5E-12 3.2E-17 107.3 10.8 112 1-118 516-641 (659)
425 COG2401 ABC-type ATPase fused 99.4 1.8E-12 3.9E-17 103.7 9.3 102 21-122 485-588 (593)
426 TIGR00611 recf recF protein. A 99.3 4.7E-12 1E-16 101.1 7.8 63 41-107 274-345 (365)
427 COG0419 SbcC ATPase involved i 99.3 1.3E-11 2.8E-16 108.4 10.5 80 38-119 811-898 (908)
428 PF02463 SMC_N: RecF/RecN/SMC 99.3 3.3E-11 7.2E-16 89.4 9.3 88 19-116 120-211 (220)
429 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.9E-11 4E-16 90.5 7.8 74 36-111 85-159 (204)
430 KOG0063 RNAse L inhibitor, ABC 99.3 1E-11 2.2E-16 99.7 6.8 95 22-118 194-288 (592)
431 KOG0063 RNAse L inhibitor, ABC 99.3 1.2E-11 2.6E-16 99.3 6.7 93 24-117 439-531 (592)
432 cd01124 KaiC KaiC is a circadi 99.2 5.5E-11 1.2E-15 85.7 8.1 81 36-117 65-163 (187)
433 TIGR02680 conserved hypothetic 99.2 2.4E-11 5.3E-16 110.2 7.7 65 35-103 1240-1316(1353)
434 PRK00409 recombination and DNA 99.2 4.6E-11 1E-15 103.3 8.0 83 38-123 386-469 (782)
435 cd03284 ABC_MutS1 MutS1 homolo 99.2 4.9E-11 1.1E-15 88.9 6.9 87 41-130 84-179 (216)
436 PRK14079 recF recombination pr 99.2 6.8E-11 1.5E-15 93.9 7.9 76 41-124 262-346 (349)
437 cd03283 ABC_MutS-like MutS-lik 99.2 3.2E-10 7E-15 83.5 9.8 69 46-115 89-162 (199)
438 PF13304 AAA_21: AAA domain; P 99.1 2.5E-10 5.5E-15 83.9 7.6 67 39-106 233-302 (303)
439 KOG0064 Peroxisomal long-chain 99.1 1.3E-10 2.9E-15 95.4 4.6 74 41-120 611-684 (728)
440 cd03281 ABC_MSH5_euk MutS5 hom 99.1 9.2E-10 2E-14 81.9 8.3 66 45-110 93-161 (213)
441 PRK13695 putative NTPase; Prov 99.0 1.8E-09 3.9E-14 77.6 6.3 81 38-124 74-156 (174)
442 TIGR01069 mutS2 MutS2 family p 98.9 2.8E-09 6.1E-14 92.2 7.9 67 38-106 381-448 (771)
443 PF13558 SbcCD_C: Putative exo 98.9 3.5E-09 7.6E-14 68.6 5.6 51 37-87 27-90 (90)
444 TIGR02858 spore_III_AA stage I 98.8 2.4E-08 5.1E-13 76.9 8.2 79 43-131 177-268 (270)
445 PTZ00132 GTP-binding nuclear p 98.8 7.8E-09 1.7E-13 76.4 5.3 50 41-90 149-205 (215)
446 PRK13830 conjugal transfer pro 98.8 1.4E-08 3.1E-13 88.6 7.6 69 58-127 650-728 (818)
447 cd03286 ABC_MSH6_euk MutS6 hom 98.7 1.5E-07 3.2E-12 70.4 9.4 63 48-110 97-160 (218)
448 cd01128 rho_factor Transcripti 98.6 2.9E-08 6.4E-13 75.5 2.1 77 40-122 127-212 (249)
449 PF13175 AAA_15: AAA ATPase do 98.5 4.6E-07 9.9E-12 72.5 7.4 68 38-105 337-414 (415)
450 cd03287 ABC_MSH3_euk MutS3 hom 98.4 1.3E-06 2.9E-11 65.4 8.3 61 47-107 97-158 (222)
451 COG1196 Smc Chromosome segrega 98.4 4.2E-07 9.2E-12 82.1 6.6 73 39-114 1063-1139(1163)
452 KOG0964 Structural maintenance 98.4 2.3E-07 4.9E-12 80.4 3.9 75 40-117 1095-1173(1200)
453 PRK08533 flagellar accessory p 98.4 8.1E-07 1.8E-11 66.8 5.9 74 42-117 95-184 (230)
454 PRK06067 flagellar accessory p 98.4 2.1E-06 4.6E-11 64.4 8.1 76 42-118 100-187 (234)
455 PRK13891 conjugal transfer pro 98.4 6.8E-07 1.5E-11 78.5 6.1 55 53-108 680-735 (852)
456 cd01125 repA Hexameric Replica 98.3 7.4E-07 1.6E-11 67.1 4.9 81 20-104 58-160 (239)
457 TIGR03185 DNA_S_dndD DNA sulfu 98.3 1.3E-06 2.9E-11 74.6 6.0 65 39-108 548-619 (650)
458 COG3910 Predicted ATPase [Gene 98.3 9.7E-06 2.1E-10 59.3 9.0 82 38-121 125-206 (233)
459 COG4637 Predicted ATPase [Gene 98.1 1.7E-05 3.6E-10 62.1 8.5 84 41-126 269-354 (373)
460 cd01120 RecA-like_NTPases RecA 98.1 1.2E-05 2.7E-10 55.7 6.8 66 41-107 66-141 (165)
461 PF13166 AAA_13: AAA domain 98.1 1.7E-05 3.7E-10 68.3 8.9 72 39-110 497-578 (712)
462 TIGR02655 circ_KaiC circadian 98.0 7E-07 1.5E-11 73.9 -1.2 72 35-117 108-190 (484)
463 PRK07721 fliI flagellum-specif 98.0 1.9E-05 4.1E-10 64.7 6.2 87 41-129 222-340 (438)
464 COG0497 RecN ATPase involved i 97.9 0.00013 2.8E-09 61.1 9.5 75 41-118 430-508 (557)
465 KOG0933 Structural maintenance 97.9 1.2E-05 2.6E-10 70.2 3.4 74 37-113 1077-1154(1174)
466 PRK13873 conjugal transfer ATP 97.8 5.3E-05 1.1E-09 66.5 6.8 50 57-107 632-682 (811)
467 KOG0962 DNA repair protein RAD 97.8 5.6E-05 1.2E-09 68.0 6.5 77 41-117 1182-1273(1294)
468 PRK05399 DNA mismatch repair p 97.7 0.00022 4.8E-09 63.0 9.0 69 41-112 665-738 (854)
469 TIGR00152 dephospho-CoA kinase 97.7 3E-05 6.4E-10 56.3 2.6 73 45-120 60-134 (188)
470 PRK13898 type IV secretion sys 97.6 0.00019 4E-09 63.0 7.4 52 56-108 638-690 (800)
471 KOG0996 Structural maintenance 97.5 8.6E-05 1.9E-09 65.9 4.1 76 39-117 1192-1271(1293)
472 COG1195 RecF Recombinational D 97.4 0.0006 1.3E-08 54.5 7.1 76 41-121 274-361 (363)
473 TIGR02788 VirB11 P-type DNA tr 97.4 8.8E-05 1.9E-09 58.1 2.4 71 50-130 208-279 (308)
474 PF09818 ABC_ATPase: Predicted 97.2 0.0019 4.1E-08 52.7 7.8 81 41-121 321-416 (448)
475 cd01131 PilT Pilus retraction 97.1 0.00069 1.5E-08 49.7 4.4 56 52-116 66-121 (198)
476 PRK06793 fliI flagellum-specif 97.1 0.00058 1.2E-08 55.9 3.9 82 39-127 218-306 (432)
477 PRK08699 DNA polymerase III su 97.0 0.00083 1.8E-08 53.1 4.3 44 64-109 116-159 (325)
478 KOG0018 Structural maintenance 96.9 0.0018 4E-08 57.4 5.7 77 38-119 1047-1127(1141)
479 COG4694 Uncharacterized protei 96.9 0.0036 7.7E-08 52.5 6.7 69 42-111 529-605 (758)
480 PRK14088 dnaA chromosomal repl 96.7 0.0032 7E-08 51.7 5.2 69 59-128 193-264 (440)
481 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0029 6.4E-08 46.9 4.5 58 59-117 106-177 (224)
482 PF13514 AAA_27: AAA domain 96.6 0.0068 1.5E-07 55.1 7.2 67 39-107 1022-1096(1111)
483 PF00488 MutS_V: MutS domain V 96.4 0.037 8E-07 41.8 9.1 66 41-106 101-169 (235)
484 COG3044 Predicted ATPase of th 96.4 0.011 2.4E-07 48.2 6.5 82 41-122 319-412 (554)
485 smart00382 AAA ATPases associa 96.3 0.064 1.4E-06 35.2 8.9 62 41-102 59-125 (148)
486 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.017 3.7E-07 42.9 6.5 58 60-117 121-188 (229)
487 TIGR00416 sms DNA repair prote 96.2 0.011 2.3E-07 49.0 5.5 62 59-120 169-247 (454)
488 PRK13764 ATPase; Provisional 96.1 0.034 7.3E-07 47.5 8.1 64 55-126 319-399 (602)
489 cd01122 GP4d_helicase GP4d_hel 96.0 0.026 5.6E-07 42.9 6.4 71 48-118 126-228 (271)
490 KOG0250 DNA repair protein RAD 95.9 0.0089 1.9E-07 53.3 4.0 76 40-116 987-1067(1074)
491 COG4913 Uncharacterized protei 95.8 0.061 1.3E-06 46.7 8.2 74 41-118 989-1077(1104)
492 TIGR01070 mutS1 DNA mismatch r 95.8 0.066 1.4E-06 47.6 8.7 68 42-110 651-721 (840)
493 PRK09302 circadian clock prote 95.7 0.012 2.5E-07 49.2 3.6 58 59-117 129-200 (509)
494 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.047 1E-06 38.9 6.1 67 50-118 83-154 (159)
495 TIGR01420 pilT_fam pilus retra 95.4 0.051 1.1E-06 43.2 6.3 46 52-105 187-232 (343)
496 PRK00454 engB GTP-binding prot 95.4 0.045 9.8E-07 39.2 5.4 67 21-91 126-195 (196)
497 cd01121 Sms Sms (bacterial rad 95.3 0.092 2E-06 42.4 7.3 63 58-120 156-235 (372)
498 PRK04863 mukB cell division pr 95.2 0.018 3.9E-07 53.8 3.3 58 40-102 1363-1437(1486)
499 PRK04296 thymidine kinase; Pro 95.1 0.18 3.9E-06 36.6 7.9 54 59-117 77-140 (190)
500 PRK11823 DNA repair protein Ra 95.0 0.1 2.2E-06 43.1 7.0 59 59-117 155-230 (446)
No 1
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-43 Score=266.33 Aligned_cols=142 Identities=38% Similarity=0.570 Sum_probs=130.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||++|++|++...+.+. .+.++.++++.+||+ ++.++||.+|||||||||+|||||+.+|++||+|||||+|||.+.
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT 177 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence 79999999988776432 356788999999997 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+.++++|+++.++.|.||++|||.|+.+.++||||.+|++|++++.|+..+++ +++++.++.|+.
T Consensus 178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~ 243 (339)
T COG1135 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIG 243 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998875 456777777764
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=253.73 Aligned_cols=141 Identities=35% Similarity=0.515 Sum_probs=124.2
Q ss_pred ChHHHhhcCccc-cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.||+.+++.. .+.+ ..++++.++|+++||. +..+.||.+|||||||||+|||||+.+|+++|+|||||+|||+.
T Consensus 93 TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 93 TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 688999987643 2222 2345678899999996 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..++++.++++++ .|.|.|+|||+|.++.+.||||++|++|+++++|+|++++. +.++-.+.|+.
T Consensus 172 v~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~FL~ 237 (240)
T COG1126 172 VGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237 (240)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHHHHH
Confidence 9999999999986 49999999999999999999999999999999999998764 55666777765
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-41 Score=249.47 Aligned_cols=144 Identities=37% Similarity=0.576 Sum_probs=129.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCCh-hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.|||++.+.+.+.+ ..++++.++++.+||+. ++.+|||++|||||+|||.+||||+.+|+++||||||++|||.+
T Consensus 91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~ 170 (309)
T COG1125 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170 (309)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhh
Confidence 7899999887665432 23567899999999974 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL 144 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 144 (146)
+.++.+.+++++++.|+|||+||||++++.+++|||++|++|++++.++|+++. ++.+++.+.|++.
T Consensus 171 R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999975 4556677777654
No 4
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=249.06 Aligned_cols=142 Identities=35% Similarity=0.598 Sum_probs=129.6
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.||+...+.+. .++++.++++.+||. .|.++||++|||||||||.|||||+.+|++||+|||||+|||--+
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 68999999998877643 345688999999996 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
.++.+.|.++.++.++||+|||||++++.++.|||.+|++|+|++.|+|+++. ++.+.|...|..
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 99999999999888999999999999999999999999999999999999974 555667777753
No 5
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-39 Score=238.69 Aligned_cols=143 Identities=34% Similarity=0.543 Sum_probs=124.4
Q ss_pred hHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH
Q 046954 2 VADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 81 (146)
Q Consensus 2 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~ 81 (146)
|++-+.-++...+.+..++++.++++.+||+..+++++|.+|||||+|||||||||+.+|++||||||||+||+..+.++
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 44444444433333334556889999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhhh
Q 046954 82 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQL 144 (146)
Q Consensus 82 ~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 144 (146)
+++|.+++++.|.|.|+||||+..+..+||||++|++|++++.++..++.. +.+++++.+++.
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a 244 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEA 244 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988754 467777777654
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-39 Score=238.96 Aligned_cols=143 Identities=34% Similarity=0.535 Sum_probs=127.3
Q ss_pred ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||+||+.|+++-+.. +. .++.+..-++.+||.....+.+|++|||||++|++||||++.+|+++++||||+||||.+
T Consensus 101 tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~ 180 (263)
T COG1127 101 TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180 (263)
T ss_pred chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcch
Confidence 799999998764432 21 133455668899997555899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 143 (146)
...+-++|+++++..|.|+++||||++.+..+|||+++|.+|+|+..|+++++....+++.+.|+.
T Consensus 181 a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~ 246 (263)
T COG1127 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246 (263)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhc
Confidence 999999999999889999999999999999999999999999999999999998777888888874
No 7
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-38 Score=238.89 Aligned_cols=141 Identities=41% Similarity=0.579 Sum_probs=124.1
Q ss_pred ChHHHhhcCccccCCC----ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
||.+||+||+...... ..+.++.++|+.+.|+ .+.++||.+|||||||||++||||+..|++||||||+++||..
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~ 171 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHH
Confidence 7999999998654221 2345788999999996 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
.++.+...|+++.++.|.|+++||||.+++.++||||++|++|+|...|+++++.. +..++...|+
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~ 238 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFL 238 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceeccc
Confidence 99999999999998889999999999999999999999999999999999999864 3333433433
No 8
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=233.91 Aligned_cols=131 Identities=37% Similarity=0.559 Sum_probs=120.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+.++|++...+.+. .++++.++++.+|+. ++.+++|.+|||||||||+||.+|+.+|++|||||||||||+.++
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~ 174 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHH
Confidence 78999999987766543 346788999999996 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+++.++++.++.|+|+|++|||++.+..+|||+++|++|+++.+|++.++..
T Consensus 175 ~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999987667999999999999999999999999999999999887754
No 9
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-37 Score=236.70 Aligned_cols=126 Identities=32% Similarity=0.489 Sum_probs=117.0
Q ss_pred HHHHHHHHHHcCCChh--hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 19 ENEVYKLLSLADLDSS--FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
.+++.++|+.+|++.. ..+.||++|||||||||.||.||+.+|++||+||||++||...+.+++++|++++++.|.++
T Consensus 128 ~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~ai 207 (316)
T COG0444 128 KERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL 207 (316)
T ss_pred HHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEE
Confidence 4568889999999743 67999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954 97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL 144 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 144 (146)
|+||||+..+.++||||+||..|+|++.|++++++ ++.|+|++.++..
T Consensus 208 ilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 208 ILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999999999999999999999999998865 6788999888753
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=231.02 Aligned_cols=123 Identities=40% Similarity=0.601 Sum_probs=111.2
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.+++...+.+ ...+++.++++.+||. ++.+++|++|||||||||+|||||+.+|++|||||||++||..++
T Consensus 88 Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR 166 (248)
T COG1116 88 TVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 (248)
T ss_pred hHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence 7899999998765432 2345788999999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC--CEEEEe
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEV 124 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~--G~i~~~ 124 (146)
..+.+.+.++.++.++||++||||++++..++|||++|.+ |+|...
T Consensus 167 ~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~ 214 (248)
T COG1116 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214 (248)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeE
Confidence 9999999999988899999999999999999999999999 555443
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-37 Score=242.68 Aligned_cols=142 Identities=35% Similarity=0.541 Sum_probs=127.7
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.|||+||+...+... .++++.++++.++++ ++.+++|.+|||||||||+|||||+.+|++||||||+|+||..-
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kL 171 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHH
Confidence 79999999988443222 235799999999996 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
+.++..-++++.++.|+|.|+||||-+++..++|||++|++|+|...|+|++++. +.+.+...|++
T Consensus 172 R~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 172 REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 9999999999999899999999999999999999999999999999999999865 34456666665
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-36 Score=229.65 Aligned_cols=131 Identities=35% Similarity=0.460 Sum_probs=115.9
Q ss_pred ChHHHhhcCccccC---C--C-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRG---K--K-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~---~--~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+|-+.+|...+. . + .+.+.+.++++.+|+. ++.++++.+|||||||||.|||||+++|++|||||||++||
T Consensus 92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LD 170 (258)
T COG1120 92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD 170 (258)
T ss_pred EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccC
Confidence 56777877754321 1 1 2234588899999995 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..++.++++++++++++.|+|||+++||++.+.+|||++++|++|++++.|+|+++..
T Consensus 171 i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999998889999999999999999999999999999999999987643
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=226.70 Aligned_cols=129 Identities=32% Similarity=0.457 Sum_probs=115.1
Q ss_pred ChHHHhhcCccccCC------CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK------KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+|.+.++...+.. +.+.+++.++|+++|+. ++.+++.++|||||+|||.|||||+++|++|+|||||+|+|
T Consensus 93 tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD 171 (254)
T COG1121 93 TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171 (254)
T ss_pred CHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCC
Confidence 788999887543211 12346799999999996 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..+.++|++++++ |+||++||||++.+..++|+|++| +++++..|+++++..
T Consensus 172 ~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 172 VAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999876 999999999999999999999999 567889999988754
No 14
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.2e-36 Score=236.83 Aligned_cols=141 Identities=37% Similarity=0.570 Sum_probs=121.6
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++....+.+ ...+++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 6899999875433322 1235678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
..++++|++++++.|.|||+|||+++.+.++||+|++|++|++++.|+++++.. +.++..+.|+
T Consensus 177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~ 241 (343)
T TIGR02314 177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFI 241 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHHHH
Confidence 999999999987669999999999999999999999999999999999988753 3444555554
No 15
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-37 Score=223.17 Aligned_cols=140 Identities=42% Similarity=0.595 Sum_probs=120.8
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
|++||+++|++..+... -++.++..|+...|++ +.+++.+..||||||||++|||||+.+|++||||||||+|||
T Consensus 103 SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 103 SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 68999999988776432 2345777888888864 345567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL 142 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 142 (146)
.+..++.++|.++++ ..|||+|||+|..+.+++|+..++..|++++.|++++++ ++.+..++.|.
T Consensus 183 IsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~~TedYi 248 (253)
T COG1117 183 ISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHKRTEDYI 248 (253)
T ss_pred hhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccHHHHHHHh
Confidence 999999999999974 789999999999999999999999999999999999876 45555666654
No 16
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=245.69 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=126.9
Q ss_pred ChHHHhhcCccccCC---CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.+++.-++..... ...++++.++++.++|+..+.++||++|||||||||+|||||+.+|++|++|||||+||+..
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 567777766544322 12234688899999998778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL 144 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 144 (146)
+.++.++|++++++.|.|.+|||||+..+..+||||++|++|+|++.|+.+.++ .+.+++++.++..
T Consensus 465 qa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 465 QAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888875 4578888887653
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-36 Score=236.32 Aligned_cols=142 Identities=34% Similarity=0.492 Sum_probs=128.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||++|++|++...+.+ ..++++.++.+.+++. ++++++|.+|||||||||+|||||+++|+++|||||+|+||...+
T Consensus 91 tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR 169 (338)
T COG3839 91 TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169 (338)
T ss_pred cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHH
Confidence 7999999999876543 3356789999999995 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+...|+++.++.|.|+|++|||..++..++|||++|++|+|.+.|+|.++.. +.+.+...|++
T Consensus 170 ~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG 235 (338)
T COG3839 170 VLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIG 235 (338)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhcC
Confidence 999999999998889999999999999999999999999999999999999864 44445566654
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-36 Score=223.34 Aligned_cols=121 Identities=37% Similarity=0.562 Sum_probs=105.8
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.|||.+++.+.+.+. ..+++..+++.+|+.+...+++|.+|||||||||+|||||+.+|++|++||||++||..+.
T Consensus 99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~ 178 (226)
T COG1136 99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178 (226)
T ss_pred CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHH
Confidence 78999998776554432 3456788899999974444488999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~ 122 (146)
+.+++++.+++++.|+|+|+||||+..+ .+|||++.|++|++.
T Consensus 179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~ 221 (226)
T COG1136 179 KEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeee
Confidence 9999999999988899999999998766 579999999999953
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=220.64 Aligned_cols=129 Identities=31% Similarity=0.511 Sum_probs=118.5
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.|+..+++... .+.++.++.+.+++. ++.++.++.||.||||||+|||||+++|++++|||||+|||..+.
T Consensus 91 T~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~ 169 (245)
T COG4555 91 TARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169 (245)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHH
Confidence 78999999887776533 356788899999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.+.+.++++++ .|++|||+||.|++++.+||||++|++|+++..|+++.+.
T Consensus 170 r~~~dfi~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 170 RKFHDFIKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred HHHHHHHHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 999999999975 5999999999999999999999999999999999998764
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=223.43 Aligned_cols=130 Identities=28% Similarity=0.403 Sum_probs=115.8
Q ss_pred ChHHHhhcCccccC--------C--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRG--------K--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~--------~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||.+|+..+...+. . ..++..+.++|+++|+. +++..+..+|||||+|||+|||||+++|+++|.|||+
T Consensus 97 sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 97 SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 57899988753321 1 12344577899999995 5788889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
++|||.+.+.+++.|++++++.|.|+|++.|+++.+.+|||||+-|++|+|+++|++.++.
T Consensus 176 asLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred cccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 9999999999999999999989999999999999999999999999999999999998764
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=234.67 Aligned_cols=142 Identities=28% Similarity=0.443 Sum_probs=123.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+ ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 92 tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r 170 (356)
T PRK11650 92 SVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170 (356)
T ss_pred CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 7899999986543322 1235678899999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus 171 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 171 VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 999999999987669999999999999999999999999999999999998754 33445555544
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=233.28 Aligned_cols=142 Identities=30% Similarity=0.484 Sum_probs=123.8
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.|+...++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 94 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r 172 (351)
T PRK11432 94 SLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR 172 (351)
T ss_pred CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 6899999986544322 2245688899999996 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|+|+|+||||.+++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus 173 ~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 173 RSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 999999999987679999999999999999999999999999999999998754 33445566654
No 23
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.1e-35 Score=234.43 Aligned_cols=142 Identities=32% Similarity=0.455 Sum_probs=122.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+ ....++.++++.++|. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r 173 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 6899999986544322 1235688899999996 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKH-GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~-g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 143 (146)
..+.+.|+++.++. |.|+|+||||++++..+||||++|++|++++.|+++++... .+.+...|++
T Consensus 174 ~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 99999999998765 89999999999999999999999999999999999987543 3344444543
No 24
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-35 Score=211.63 Aligned_cols=132 Identities=38% Similarity=0.454 Sum_probs=119.7
Q ss_pred ChHHHhhcCccccC--CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRG--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.+|....- ....+++++.++.++|+. .+.++.|.+|||||||||++||+|+++-++++||||||+|||.-+
T Consensus 87 tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR 165 (231)
T COG3840 87 TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (231)
T ss_pred hhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence 68999999864321 123456789999999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
.++..++.+++++.+.|++||||.++++.+++++++++++|+|.+.|+.+++...
T Consensus 166 ~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999887654
No 25
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-35 Score=233.72 Aligned_cols=141 Identities=36% Similarity=0.572 Sum_probs=121.6
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++....+.. ...+++.++++.++|+ .+.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 7899999876544322 1245688899999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
..+.+.+.+++++.|+|||++|||++++.++||||++|++|++++.|+++++.. +.+++...|+
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 999999999976668999999999999999999999999999999999988753 3344444443
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.7e-35 Score=233.20 Aligned_cols=142 Identities=37% Similarity=0.536 Sum_probs=123.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+ ....++.++++.++++ ++.++++.+|||||||||+|||||+.+|+++||||||++||+..+
T Consensus 92 tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r 170 (353)
T TIGR03265 92 TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR 170 (353)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 6899999986543322 2245688999999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus 171 ~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 999999999987679999999999999999999999999999999999998764 33445555543
No 27
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.2e-35 Score=229.44 Aligned_cols=143 Identities=24% Similarity=0.402 Sum_probs=121.3
Q ss_pred ChHHHhhcCccccC--CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRG--KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.+|+.++..... .. ...+++.++++.+++.....++++++|||||+|||+|||||+.+|++||+||||++||+.
T Consensus 116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~ 195 (331)
T PRK15079 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195 (331)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 57888876543221 11 123457788999999545789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
++..+.++|+++.++.|.|+|+||||++.+..+||||++|.+|++++.|+++++. ++.+++...++.
T Consensus 196 ~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 196 IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 9999999999998766999999999999999999999999999999999998875 455677776653
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.9e-35 Score=232.31 Aligned_cols=142 Identities=32% Similarity=0.510 Sum_probs=122.9
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 102 tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r 180 (375)
T PRK09452 102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180 (375)
T ss_pred CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 68999999865433221 234678899999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|++++.|+++++.. +.+.+...|++
T Consensus 181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g 246 (375)
T PRK09452 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG 246 (375)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999987679999999999999999999999999999999999988754 33445555554
No 29
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=239.88 Aligned_cols=125 Identities=30% Similarity=0.486 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCChhhh-cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 19 ENEVYKLLSLADLDSSFL-SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
.+++.++++.+|++.... ++||++|||||||||.||+||+.+|++||+||||++||+..+.+++++|++++++.|+++|
T Consensus 130 ~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l 209 (539)
T COG1123 130 RKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL 209 (539)
T ss_pred HHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 456788999999974333 4699999999999999999999999999999999999999999999999999988999999
Q ss_pred EEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+||||+..+.++||||+||++|++++.|+++++. ++.|+|+..++.
T Consensus 210 ~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 210 FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred EEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHh
Confidence 9999999999999999999999999999999975 567788777654
No 30
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.6e-35 Score=226.33 Aligned_cols=129 Identities=35% Similarity=0.547 Sum_probs=117.2
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.|.+..++.+ ...+++.++++.++|.. ..++++++||+|||||++||+||+++|+++||||||+||||.++
T Consensus 94 T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~ 172 (293)
T COG1131 94 TVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESR 172 (293)
T ss_pred cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHH
Confidence 7899999988777643 23567999999999974 55888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
..++++|++++++.|+||+++||.+++++.+||||++|++|++++.|+++++
T Consensus 173 ~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 173 REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999876448999999999999999999999999999999988765
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=229.56 Aligned_cols=142 Identities=35% Similarity=0.498 Sum_probs=121.8
Q ss_pred ChHHHhhcCcccc----CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR----GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||.||+.|+.... ... ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 90 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD 168 (353)
T PRK10851 90 TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168 (353)
T ss_pred cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 6899999876432 111 1235678899999996 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
+.++..+.+.|+++.++.|+|+|++|||++++..+||||++|++|++++.|+++++.. +.+.+...|++
T Consensus 169 ~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 169 AQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 9999999999999987668999999999999999999999999999999999988754 33445555543
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-34 Score=217.99 Aligned_cols=136 Identities=37% Similarity=0.522 Sum_probs=115.1
Q ss_pred ChHHHhhcCccccC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.||+.++..... .. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 67889887643221 11 1134577889999996 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
+..+.+.|++++++.|+|||++||+++++..+||++++|++|++++.|+++++....+++
T Consensus 172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 231 (235)
T cd03261 172 SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPL 231 (235)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCCChh
Confidence 999999999997645899999999999999999999999999999999988775443333
No 33
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=226.36 Aligned_cols=125 Identities=27% Similarity=0.468 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++.++++.+|+.....++++++|||||+|||+|||||+.+|++||+||||++||+.++..++++|.+++++.|.|+|+
T Consensus 131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 210 (327)
T PRK11308 131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF 210 (327)
T ss_pred HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34678899999996446799999999999999999999999999999999999999999999999999998767999999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
||||+..+.++||+|++|++|+|++.|+++++. ++.+++++.++.
T Consensus 211 iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 211 ISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999998875 456778777664
No 34
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-34 Score=229.65 Aligned_cols=142 Identities=31% Similarity=0.495 Sum_probs=122.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.|+....+.+ ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r 185 (377)
T PRK11607 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR 185 (377)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 6899999986543322 1235678899999996 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|.|+|++|||++++..+|||+++|++|++++.|+++++... .+.+...|++
T Consensus 186 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 186 DRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 9999999998876799999999999999999999999999999999999887543 3344455543
No 35
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-34 Score=207.59 Aligned_cols=124 Identities=31% Similarity=0.476 Sum_probs=113.4
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||++|++...+.+. .++++.++|+.+||. +..+..|.+|||||||||+||||++++|++||.||||.+|||...
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 79999999988776543 356788999999996 678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
..+++++.++.+ .|+||++.|||.+.+..+..|++.|++|+++.+..
T Consensus 174 ~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 174 WEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999986 59999999999999999999999999999987543
No 36
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-34 Score=225.05 Aligned_cols=125 Identities=28% Similarity=0.468 Sum_probs=112.5
Q ss_pred HHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 19 ENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
.+++.++++.+|+.. ...++++++|||||||||+|||||+.+|++||+||||++||+.++..++++|++++++.|.|+
T Consensus 128 ~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~ti 207 (326)
T PRK11022 128 RQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMAL 207 (326)
T ss_pred HHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 356788999999962 356889999999999999999999999999999999999999999999999999987679999
Q ss_pred EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
|+||||++.+.++||||++|.+|+|++.|+++++. ++.++++..++.
T Consensus 208 l~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 208 VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence 99999999999999999999999999999998875 456677776653
No 37
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=223.09 Aligned_cols=131 Identities=32% Similarity=0.529 Sum_probs=115.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+....+.. ...+++.++++.+|+..++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 122 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~ 201 (305)
T PRK13651 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGV 201 (305)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 6889998876443322 12356788999999964578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..+.+.|.++++ .|+|||+||||++.+.++||||++|++|++++.|+++++..
T Consensus 202 ~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 202 KEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999975 59999999999999999999999999999999999887643
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=227.75 Aligned_cols=142 Identities=32% Similarity=0.493 Sum_probs=121.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 91 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~ 169 (369)
T PRK11000 91 SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (369)
T ss_pred CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 6899999875433322 1234678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|.|+|++|||++++..+||++++|++|++++.|+++++.. +.+.+...|++
T Consensus 170 ~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999976568999999999999999999999999999999999988754 33445555544
No 39
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.5e-34 Score=227.81 Aligned_cols=141 Identities=31% Similarity=0.537 Sum_probs=121.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++....+.. ....++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 122 Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 122 TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 6899998875433322 1234678899999996 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
..+.+.|.+++++.|+|||+||||++++.++||||++|++|++++.|+++++.. +...+...|.
T Consensus 201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 265 (382)
T TIGR03415 201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265 (382)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHHh
Confidence 999999999986669999999999999999999999999999999999988753 3344555554
No 40
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=225.05 Aligned_cols=144 Identities=32% Similarity=0.472 Sum_probs=125.9
Q ss_pred ChHHHhhcCccccCCC----ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
||.+-|.-|+...... ...+++.++++.+|++..-.++||+++|||||||++||||++.+|++++||||||+||..
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 4555565555443321 224568889999999977889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL 144 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 144 (146)
.+.++.++|+++.++.|.+-+|||||+..+..+||+|+||++|+||+.|+.++++ ++.++|++.++++
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L~~a 529 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAA 529 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999875 5677888877654
No 41
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6e-34 Score=223.79 Aligned_cols=124 Identities=27% Similarity=0.428 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 20 NEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 20 ~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
+++.++++.++++. ...++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.++|++++++.|.|+|
T Consensus 137 ~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til 216 (330)
T PRK09473 137 EESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAII 216 (330)
T ss_pred HHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45778899999963 2457899999999999999999999999999999999999999999999999999876699999
Q ss_pred EEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+||||++.+.++||||++|++|+|++.|+++++. .+.+++...++.
T Consensus 217 ~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 217 MITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred EEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999998875 456778877764
No 42
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4e-34 Score=222.75 Aligned_cols=129 Identities=32% Similarity=0.478 Sum_probs=113.8
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.+....++... ...++.++++.+++. ...++++++||||||||++||+||+++|++|||||||+|||+.++
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 68899987554443321 234577889999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.++++|+++++ .|+|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 175 ~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 175 HLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999975 4999999999999999999999999999999999988763
No 43
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-34 Score=205.44 Aligned_cols=141 Identities=35% Similarity=0.462 Sum_probs=119.6
Q ss_pred ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.||+.-++. ..+.+ ...++++.+|.++|+. +..+.||..|||||+||++|||||+.+|+++++|||||+|||+-
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPEl 187 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL 187 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHH
Confidence 46677655432 22222 2345688899999996 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
.-++++.++++++ +|+|.+++||.|.++...+..|++|++|.|-++|+|++++. +..+-.+.|+.
T Consensus 188 VgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 188 VGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred HHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCCHHHHHHHH
Confidence 9999999999986 59999999999999999999999999999999999999864 44455566654
No 44
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-34 Score=220.21 Aligned_cols=131 Identities=35% Similarity=0.567 Sum_probs=114.2
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++....+... ..+++.++++.++|...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~ 181 (290)
T PRK13634 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGR 181 (290)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 67899988654332221 2345788999999964567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.++|++++++.|.|||++|||++++.++||||++|++|++++.|+++++.
T Consensus 182 ~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 182 KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999997656999999999999999999999999999999999987753
No 45
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.6e-34 Score=222.51 Aligned_cols=141 Identities=32% Similarity=0.539 Sum_probs=120.1
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.|+...++... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+++||||||+|||+.++
T Consensus 58 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~ 136 (325)
T TIGR01187 58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136 (325)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 68899988754332221 234678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
..+.+.|+++.++.|+|+|+|||+++++..+||++++|++|+++..|+++++... ...+...|+
T Consensus 137 ~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~ 201 (325)
T TIGR01187 137 DQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201 (325)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHhc
Confidence 9999999999876699999999999999999999999999999999999887543 334444444
No 46
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=213.68 Aligned_cols=141 Identities=28% Similarity=0.569 Sum_probs=122.7
Q ss_pred ChHHHhhcCcccc-------C-------CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEe
Q 046954 1 TVADNIRYGPQLR-------G-------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLL 66 (146)
Q Consensus 1 tv~eni~~~~~~~-------~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 66 (146)
||.||+..+...+ . .....+++..+|+++||. +..+++.++||+|||+|+.|||||+.+|++|+|
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL 173 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence 7889998874311 0 011245688899999996 689999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954 67 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 67 DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 143 (146)
|||.+||.+.....+.+.|++++++.|.||++|.|||+.+..+||||+||+.|+++++|+|+++.++ +...++|++
T Consensus 174 DEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d-p~VieAYLG 249 (250)
T COG0411 174 DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN-PRVIEAYLG 249 (250)
T ss_pred cCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC-HHhHHHhcC
Confidence 9999999999999999999999876689999999999999999999999999999999999998754 445667664
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=222.78 Aligned_cols=140 Identities=39% Similarity=0.570 Sum_probs=118.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++...++.. ...+++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 6789998865433322 1234677899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHH
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 141 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 141 (146)
..+.+.|++++++.|+|||++||+++++.++||++++|++|++++.|+++++... .......|
T Consensus 177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 240 (343)
T PRK11153 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHH
Confidence 9999999999765689999999999999999999999999999999998877432 23344434
No 48
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=226.32 Aligned_cols=141 Identities=38% Similarity=0.583 Sum_probs=120.0
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 6889998875433322 1234677899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
..+.+.|.+++++.|+|||++||+++++.++||++++|++|++++.|+++++.. +.+.+...|+
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~ 265 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHH
Confidence 999999999976568999999999999999999999999999999999888743 3344544444
No 49
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=218.19 Aligned_cols=131 Identities=34% Similarity=0.550 Sum_probs=114.1
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCC-hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||++|+.++....+... ..+++.++++.+|+. .++.++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 68899987654333221 234578899999995 246789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+..+.++|.+++++.|.|||++||+++++..+||||++|++|++++.|+++++.
T Consensus 180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999997656899999999999999999999999999999999987753
No 50
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.9e-34 Score=220.35 Aligned_cols=128 Identities=30% Similarity=0.490 Sum_probs=113.0
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.+....++.. ...+++.++++.+++. +..++++.+|||||||||+||+||+++|++|||||||+|||+.++
T Consensus 82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 6789988765443322 1234678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.+++.|+++++ .|+|||++||+++++.++||+|++|++|+++..|+++++
T Consensus 161 ~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 161 RAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999975 499999999999999999999999999999999998765
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-33 Score=211.19 Aligned_cols=140 Identities=37% Similarity=0.537 Sum_probs=116.7
Q ss_pred ChHHHhhcCccccCC----C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK----K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||.||+.++....+. . ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD 168 (239)
T cd03296 90 TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168 (239)
T ss_pred CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 678999876432211 1 1124567889999995 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 141 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 141 (146)
+.+++.+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|+++++.. +..+....+
T Consensus 169 ~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 236 (239)
T cd03296 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSF 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCCcHHHHHH
Confidence 9999999999999976558999999999999999999999999999999999887743 233444443
No 52
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=214.10 Aligned_cols=126 Identities=32% Similarity=0.505 Sum_probs=118.0
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++.++++.+|+..+..+++|++|||||+||++|||||+.+|+++++|||+|+||...+.++.++|.+++++.|.|.+|
T Consensus 86 ~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 86 RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred HHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 35688999999998778999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL 144 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 144 (146)
||||++.+..+||||.+|..|+|++.|+.+++. ++.|++++.++.+
T Consensus 166 IsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 166 ISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred EEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 999999999999999999999999999998865 5678998887754
No 53
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=220.39 Aligned_cols=124 Identities=27% Similarity=0.494 Sum_probs=111.6
Q ss_pred HHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 20 NEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 20 ~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
+++.++++.+||.. ...++++.+|||||+|||+|||||+.+|++||+||||++||+.++..+.++|+++.++.|.|+|
T Consensus 134 ~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii 213 (330)
T PRK15093 134 RRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTIL 213 (330)
T ss_pred HHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 46788999999963 3468899999999999999999999999999999999999999999999999999865699999
Q ss_pred EEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+||||++.+.++||||++|++|+|++.|+++++. .+.+++.+.++.
T Consensus 214 ~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 214 LISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR 260 (330)
T ss_pred EEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999998874 455677776654
No 54
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=217.56 Aligned_cols=130 Identities=36% Similarity=0.540 Sum_probs=113.8
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.|+....+.+ ....++.++++.+++...+.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~ 180 (288)
T PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180 (288)
T ss_pred hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHH
Confidence 6789998875433322 12345778899999953467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.++++ .|.|||++|||++++..+||||++|++|++++.|+++++.
T Consensus 181 ~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 181 IEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999975 4999999999999999999999999999999999988764
No 55
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.2e-33 Score=213.56 Aligned_cols=142 Identities=28% Similarity=0.383 Sum_probs=119.3
Q ss_pred ChHHHhhcCcccc-CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++.... ... ...+++.++++.+++...+.++++.+|||||||||+|||||+++|++|||||||++||+.+
T Consensus 106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~ 185 (265)
T TIGR02769 106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL 185 (265)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 5677876543211 111 1234677899999995346788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+..+.+.|.+++++.|+|||++||+++.+..+||++++|++|++++.|+++++....+++.+.+.
T Consensus 186 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCCCCHHHHHHH
Confidence 99999999999765589999999999999999999999999999999999888665666666554
No 56
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.9e-33 Score=222.81 Aligned_cols=131 Identities=30% Similarity=0.463 Sum_probs=114.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||+||+.++..........+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 91 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~ 169 (354)
T TIGR02142 91 SVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169 (354)
T ss_pred cHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 68899988653221111234578899999996 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+.|++++++.|+|+|++||+++++..+||++++|++|+++..|+++++..
T Consensus 170 l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999976568999999999999999999999999999999999887643
No 57
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-33 Score=208.82 Aligned_cols=129 Identities=30% Similarity=0.473 Sum_probs=111.6
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+++|+.++...++... ..+++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~ 167 (220)
T cd03265 89 TGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167 (220)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 57888877543332211 234678899999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
..+.+.|.+++++.|+|||++||+++++..+||++++|++|+++..++++++
T Consensus 168 ~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 168 AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999765589999999999999999999999999999988877653
No 58
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-33 Score=213.29 Aligned_cols=142 Identities=32% Similarity=0.557 Sum_probs=118.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 6788887754322211 1234577889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++.+ +...+...|+.
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 262 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFR 262 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence 999999999976558999999999999999999999999999999999888753 33445555543
No 59
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=221.20 Aligned_cols=127 Identities=31% Similarity=0.494 Sum_probs=114.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||+||+.++.. ....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus 92 tv~enl~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~ 166 (352)
T PRK11144 92 KVRGNLRYGMA----KSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred cHHHHHHhhhh----hhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 67888887642 12345688899999996 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+.|++++++.|+|+|+||||++++..+||++++|++|+++..|+++++..
T Consensus 167 l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999987668999999999999999999999999999999999988754
No 60
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-33 Score=208.23 Aligned_cols=141 Identities=45% Similarity=0.677 Sum_probs=118.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.++..... ....++.++++.+++..++.++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 92 tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 169 (241)
T PRK14250 92 TVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169 (241)
T ss_pred hHHHHHhcchhhcC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 57788876533221 2234677889999995346788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
+.+.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++.. +.+++...|+.
T Consensus 170 l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (241)
T PRK14250 170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ 233 (241)
T ss_pred HHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHHh
Confidence 9999999876458999999999999999999999999999999999887753 33456666653
No 61
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=235.05 Aligned_cols=143 Identities=29% Similarity=0.426 Sum_probs=121.0
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.+|+.++....+. . ...+++.++++.+|++....++++++|||||||||+|||||+.+|++|||||||++||+.+
T Consensus 419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~ 498 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498 (623)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 577888765432221 1 1234678899999995346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+..+.++|++++++.|.|||+||||++++..+||||++|++|++++.|+++++. .+.+++...++.
T Consensus 499 ~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 999999999998766999999999999999999999999999999999998875 445667666653
No 62
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-33 Score=214.98 Aligned_cols=131 Identities=31% Similarity=0.498 Sum_probs=113.6
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+|+.....++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~ 181 (286)
T PRK13646 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181 (286)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 5789998865332221 12345778899999953467889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.++|++++++.|+|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 182 ~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 182 RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999997656899999999999999999999999999999999987753
No 63
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-33 Score=206.18 Aligned_cols=124 Identities=42% Similarity=0.626 Sum_probs=106.8
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+++|+.++....+.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~ 166 (213)
T cd03259 88 TVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166 (213)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5788887754322211 1234577889999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|
T Consensus 167 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999997655899999999999999999999999999997654
No 64
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=221.16 Aligned_cols=127 Identities=35% Similarity=0.547 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954 18 TENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t 95 (146)
.++++.++|+.+|+.+ ...+.||++|||||||||.||.||+++|++||.||||++||...+.+|+++|+++.++.|.+
T Consensus 131 Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa 210 (534)
T COG4172 131 ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMA 210 (534)
T ss_pred HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcE
Confidence 3567888999999963 35688999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhhh
Q 046954 96 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQL 144 (146)
Q Consensus 96 vi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 144 (146)
+++||||+..+.++||||+||.+|++++.|+.+.++ .+.++|++.++..
T Consensus 211 ~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 211 ILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred EEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 999999999999999999999999999999998875 5678999887754
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-33 Score=208.89 Aligned_cols=130 Identities=30% Similarity=0.445 Sum_probs=111.5
Q ss_pred ChHHHhhcCccc--------cCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQL--------RGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~--------~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+.+|+.++... .+. ....+++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 678888765321 011 11234577889999995 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+|||+.++..+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999997655899999999999999999999999999999999887763
No 66
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-33 Score=217.61 Aligned_cols=130 Identities=30% Similarity=0.516 Sum_probs=112.9
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+... ...++.++++.+++...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~ 212 (320)
T PRK13631 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212 (320)
T ss_pred hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 68899988753222211 2345778899999963578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.++++ .|.|||+|||+++++.++||||++|++|++++.|+++++.
T Consensus 213 ~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 213 HEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999875 4999999999999999999999999999999999988754
No 67
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-33 Score=213.21 Aligned_cols=128 Identities=32% Similarity=0.507 Sum_probs=112.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.++....+.. ...+++..+++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 174 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 6789998764332221 1234577889999995 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
..+.+.|++++++ |.|||++||+++++.++|||+++|++|++++.|+++++
T Consensus 175 ~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 175 ETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999764 99999999999999999999999999999999988654
No 68
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.7e-33 Score=220.03 Aligned_cols=129 Identities=33% Similarity=0.492 Sum_probs=113.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++... ..+++.++++.+++. +..++++.+||||||||++||+||+++|+++||||||+|||+.++
T Consensus 130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r 208 (340)
T PRK13536 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208 (340)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 67899986544433221 234567889999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..++++|+++++ .|+|||++||+++++.++||+|++|++|+++..|+++++.
T Consensus 209 ~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 209 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999975 5999999999999999999999999999999999988763
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.5e-33 Score=222.51 Aligned_cols=130 Identities=27% Similarity=0.370 Sum_probs=114.4
Q ss_pred ChHHHhhcCcccc----C--CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR----G--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~----~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|++||+.++...+ . .....+++.++++.+++. ++.++++.+|||||||||+|||||+++|++|||||||+|||
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD 171 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 6889998864321 1 112245688899999996 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..++++|+++++ .|+|||++||+++++.++|||+++|++|+++..|+++++..
T Consensus 172 ~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 172 INHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999986 58999999999999999999999999999999999987643
No 70
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6.4e-33 Score=212.33 Aligned_cols=140 Identities=29% Similarity=0.405 Sum_probs=115.8
Q ss_pred ChHHHhhcCccccC-CCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRG-KKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++..... ... ...++.++++.+++. +..++++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 67888877532211 111 123567789999996 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF 141 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 141 (146)
+..+.+.|++++++.|.|||++||+++++.++||++++|++|++++.|+++++.....+....|
T Consensus 179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 242 (269)
T PRK11831 179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQF 242 (269)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHHHHH
Confidence 9999999999976558999999999999999999999999999999999888754333333333
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-33 Score=205.67 Aligned_cols=127 Identities=39% Similarity=0.585 Sum_probs=109.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++...++.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 89 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 89 TVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 6788888764332221 1234678899999995 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE--CCEEEEeeCcc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKPD 128 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~--~G~i~~~g~~~ 128 (146)
..+.+.|+++.++.|.|||++||+++++..+||++++|+ +|++++.++.+
T Consensus 168 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 168 EQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999866568999999999999999999999999 79999887754
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.8e-33 Score=208.80 Aligned_cols=129 Identities=32% Similarity=0.477 Sum_probs=111.1
Q ss_pred ChHHHhhcCcccc--------CC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+.+|+.++.... +. ....+++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5788887653211 10 11234677889999995 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+|||+.++..+.+.|.+++++.|+|||++||+++++.++||++++|++|++++.|+++++
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999765589999999999999999999999999999999988776
No 73
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=202.58 Aligned_cols=139 Identities=27% Similarity=0.498 Sum_probs=120.7
Q ss_pred ChHHHhhcCccccCCCc----cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKKL----TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
||.||+...+....... .+.+.+++++.+++. +..+.+..+||||||+|+.|||||+.+|+++||||||+|.||.
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi 173 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence 78999988776654221 223467899999995 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+...+.++++.++. .|..|+++.|+..+...+|||.+++.+|++.++|+++++.++ +...+.|+
T Consensus 174 aV~dIq~iI~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n-~~Vr~~YL 237 (243)
T COG1137 174 AVIDIQRIIKHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN-EDVRRVYL 237 (243)
T ss_pred hHHHHHHHHHHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC-hhhhhhcc
Confidence 99999999999975 599999999999999999999999999999999999998653 23334444
No 74
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-33 Score=214.06 Aligned_cols=130 Identities=32% Similarity=0.544 Sum_probs=112.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....... ...+++.++++.+++...+.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~ 181 (287)
T PRK13641 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181 (287)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 5788988754322221 12345788899999953478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.++++ .|.|||++||+++++.++||++++|++|+++..|+++++.
T Consensus 182 ~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 182 KEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999975 4999999999999999999999999999999999987653
No 75
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-33 Score=212.88 Aligned_cols=129 Identities=29% Similarity=0.501 Sum_probs=112.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.++....+.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 176 (279)
T PRK13650 98 TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176 (279)
T ss_pred cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 6889998875433222 1234678899999995 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|+|||++||+++.+ .+|||+++|++|+++..|+++++.
T Consensus 177 ~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 177 LELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999765699999999999998 579999999999999999987754
No 76
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=206.21 Aligned_cols=142 Identities=32% Similarity=0.430 Sum_probs=118.5
Q ss_pred ChHHHhhcCcccc-C-CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++.... . .....+++.++++.++++ ++.++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus 87 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 87 TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 6788997753211 1 111234678899999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQL 144 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 144 (146)
..+.+.|.++.++.|.|+|++||+++++.++||++++|++|++++.|+++++... ......|++.
T Consensus 166 ~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~-~~~~~~~~~~ 230 (232)
T PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG-KASASALLGI 230 (232)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-hhHHHHhhcc
Confidence 9999999998765589999999999999999999999999999999998877543 2344555443
No 77
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.7e-33 Score=208.43 Aligned_cols=129 Identities=30% Similarity=0.563 Sum_probs=111.7
Q ss_pred ChHHHhhcCccccCC------------CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeC
Q 046954 1 TVADNIRYGPQLRGK------------KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDE 68 (146)
Q Consensus 1 tv~eni~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE 68 (146)
||.||+.++...... ....+++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 169 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 678898876432211 11133577889999996 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 69 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 69 Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
||+|||+.++..+.+.|.++++ .|+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 170 PAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999976 5899999999999999999999999999999999887764
No 78
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-32 Score=205.53 Aligned_cols=127 Identities=48% Similarity=0.697 Sum_probs=108.2
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCChhhhcCC--cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLSKT--GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||.||+.++....+... ..+++.++++.+++. +..+++ +.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 174 (227)
T cd03260 96 SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174 (227)
T ss_pred cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 68899987643332111 234677889999996 455555 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
.++..+.+.|+++++ . .|||++||+++++..+||++++|++|++++.|+++++
T Consensus 175 ~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 175 ISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999975 3 8999999999999999999999999999999887653
No 79
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.6e-33 Score=228.76 Aligned_cols=144 Identities=29% Similarity=0.427 Sum_probs=120.5
Q ss_pred ChHHHhhcCccccC--CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRG--KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
||.||+.++...+. .. ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 459 (529)
T PRK15134 380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459 (529)
T ss_pred cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence 67888887543221 11 123457789999999634678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhhh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQL 144 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 144 (146)
+++.+.+.|++++++.|.|||+||||++++..+||++++|++|++++.|+++++.. +.+++...++..
T Consensus 460 ~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
T PRK15134 460 VQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLAL 528 (529)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChHHHHHhhc
Confidence 99999999999976558999999999999999999999999999999999988753 445666666543
No 80
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-32 Score=212.65 Aligned_cols=130 Identities=29% Similarity=0.475 Sum_probs=113.7
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.++....+.+. ..+++..+++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 67899987643322221 234578889999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|.|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999997655899999999999999999999999999999999987754
No 81
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-33 Score=204.84 Aligned_cols=124 Identities=34% Similarity=0.532 Sum_probs=106.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.++..........+++.++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 169 (214)
T cd03297 91 NVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169 (214)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 57788876532211111234577899999995 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|
T Consensus 170 l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999997655899999999999999999999999999998754
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-32 Score=207.56 Aligned_cols=142 Identities=38% Similarity=0.599 Sum_probs=117.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCCh-hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++....+.. ...+++.++++.+++.. .+.++++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 170 (242)
T cd03295 91 TVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 6788988754332221 12345778899999963 36789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+..+.+.|.+++++.|+|||++||+++++..+||+|++|++|++++.|+++++.. ..+++...|.
T Consensus 171 ~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 236 (242)
T cd03295 171 RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFV 236 (242)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHHHh
Confidence 9999999999976458999999999999999999999999999999998877643 2334555554
No 83
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.8e-33 Score=215.16 Aligned_cols=129 Identities=33% Similarity=0.481 Sum_probs=111.5
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 93 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 171 (303)
T TIGR01288 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171 (303)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 67888876433322211 123567789999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|+++++ .|.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 172 ~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 172 HLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999975 5999999999999999999999999999999999987763
No 84
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.1e-32 Score=204.08 Aligned_cols=124 Identities=32% Similarity=0.523 Sum_probs=107.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+++|+.++....+.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 166 (213)
T cd03301 88 TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166 (213)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 6788988764332221 1234577889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.+.+.|++++++.|.|||++||+++++..+||++++|++|++++.|
T Consensus 167 ~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999997655899999999999999999999999999998764
No 85
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-32 Score=206.18 Aligned_cols=130 Identities=39% Similarity=0.562 Sum_probs=112.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++...++.. ...+.+.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence 5788887754322221 1234577889999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999997655899999999999999999999999999999998877653
No 86
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1e-32 Score=206.91 Aligned_cols=129 Identities=31% Similarity=0.443 Sum_probs=110.5
Q ss_pred ChHHHhhcCccc--cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQL--RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~--~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.||+.++... .... ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 70 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 70 TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred CHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 678898775321 1111 1133577889999996 5788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
++..+.+.|.+++++.|+|||++||+++++..+||++++|++|+++..|+...+
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999999765689999999999999999999999999999988876554
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-32 Score=202.03 Aligned_cols=118 Identities=27% Similarity=0.455 Sum_probs=104.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.++..... ....++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.
T Consensus 88 tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 164 (205)
T cd03226 88 SVREELLLGLKELD--AGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164 (205)
T ss_pred cHHHHHhhhhhhcC--ccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHH
Confidence 67888877643222 2235688899999996 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~ 122 (146)
+.+.|+++++ .|.|+|++||+++++..+||++++|++|+++
T Consensus 165 l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 165 VGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999975 4899999999999999999999999999974
No 88
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-33 Score=195.54 Aligned_cols=139 Identities=34% Similarity=0.467 Sum_probs=117.9
Q ss_pred ChHHHhhcC-ccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYG-PQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~-~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||.||+.-+ ....+.+. ...++.++++++.+. ++.|++|-+|||||+|||+|||||+.+|++|++||||++|||+-
T Consensus 98 tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 98 TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 466776543 22333332 234677899999996 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF 141 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 141 (146)
..++.++|++++. .|+|-+++||..+.+.+.+.+|++|++|+|++.|+.+-+.++..+..+.|
T Consensus 177 taqvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~y 239 (242)
T COG4161 177 TAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNY 239 (242)
T ss_pred HHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccHHHHHHH
Confidence 9999999999974 69999999999999999999999999999999999988876654443444
No 89
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-32 Score=202.06 Aligned_cols=124 Identities=34% Similarity=0.454 Sum_probs=107.1
Q ss_pred ChHHHhhcCcccc-CC-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLR-GK-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++.... .. ....+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred cHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 6789998764321 11 12244678899999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
..+.+.|++++++.|.|||++||+++++..+||++++|++|++++.|
T Consensus 165 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 165 AEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999997656899999999999999999999999999997653
No 90
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-32 Score=211.76 Aligned_cols=131 Identities=33% Similarity=0.542 Sum_probs=111.7
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+... ..+++..+++.++++.++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 107 tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 186 (289)
T PRK13645 107 TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE 186 (289)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 57888887543222111 1234667889999953578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.++.++.|+|||++||+++++.++||++++|++|++++.|+++++.
T Consensus 187 ~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999997655899999999999999999999999999999999887653
No 91
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.3e-32 Score=204.08 Aligned_cols=119 Identities=28% Similarity=0.455 Sum_probs=103.6
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 6788888764332221 1234678899999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
..+.+.|.++++ .|.|||++||+++++..+||++++|++|++
T Consensus 175 ~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 175 RDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999975 489999999999999999999999999975
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.3e-32 Score=201.70 Aligned_cols=121 Identities=29% Similarity=0.552 Sum_probs=106.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.++...+.. ..+++.++++.+++. +..++++.+|||||||||+||||++.+|+++||||||+|||+.++..
T Consensus 88 tv~e~l~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 164 (208)
T cd03268 88 TARENLRLLARLLGI--RKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164 (208)
T ss_pred cHHHHHHHHHHhcCC--cHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHH
Confidence 678888775432221 345678899999995 57788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.+.|.++++ .|.|+|++||+++++..+||++++|++|++++.|
T Consensus 165 l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 165 LRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999976 5899999999999999999999999999998654
No 93
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-32 Score=208.80 Aligned_cols=130 Identities=31% Similarity=0.507 Sum_probs=112.9
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.+|+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~ 173 (277)
T PRK13652 95 TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173 (277)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 67888876543222211 134577889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|++++++.|.|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus 174 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999999997655899999999999999999999999999999999988764
No 94
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.2e-32 Score=203.86 Aligned_cols=130 Identities=28% Similarity=0.523 Sum_probs=112.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++...++.. ....++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 5788887754322221 1234567889999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+.+.|+++++ .|+|||++||+++.+..+||++++|++|+++..|+.+++..
T Consensus 170 ~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 170 QDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999975 48999999999999999999999999999999998877643
No 95
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.5e-32 Score=202.34 Aligned_cols=125 Identities=38% Similarity=0.537 Sum_probs=104.1
Q ss_pred ChHHHhhcCccccCCCcc--H-HH-HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKKLT--E-NE-VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~--~-~~-~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+++|+.++......... . .. +.++++.+++...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 179 (228)
T cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179 (228)
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 578888765432221111 1 12 2468889998534678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
++..+.+.|.+++++.|.|||++||+++.+..+||++++|++|+++..|
T Consensus 180 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999997655899999999999999999999999999997653
No 96
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.8e-32 Score=205.63 Aligned_cols=141 Identities=35% Similarity=0.497 Sum_probs=115.2
Q ss_pred ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|++||+.++.. ..... ...+++.++++.+|+.....++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 108 sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 187 (257)
T PRK10619 108 TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187 (257)
T ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 57888876432 11111 1234677889999996323478899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++.+.+.|+++++ .|+|||++||+++++..+||||++|++|++++.|+++++.. +.+.....|+
T Consensus 188 ~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 252 (257)
T PRK10619 188 VGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFL 252 (257)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhCccCHHHHHHh
Confidence 9999999999975 49999999999999999999999999999999999887643 2234444444
No 97
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.4e-32 Score=204.78 Aligned_cols=139 Identities=35% Similarity=0.482 Sum_probs=114.8
Q ss_pred ChHHHhhcCccc-cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++... .... ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 179 (250)
T PRK11264 101 TVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179 (250)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 578888764321 1111 1234577889999996 56788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 141 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 141 (146)
+..+.+.|.++++ .|.|||++||+++++.++||++++|++|++++.|+++++.. +.+.....|
T Consensus 180 ~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 243 (250)
T PRK11264 180 VGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQF 243 (250)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence 9999999999975 48999999999999999999999999999999999888643 233444444
No 98
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.5e-32 Score=202.04 Aligned_cols=142 Identities=28% Similarity=0.386 Sum_probs=114.9
Q ss_pred ChHHHhhcCccccCC-C-ccHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGK-K-LTENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~-~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.+|+.+.....+. . ...+++.++++.+++.. ++.++++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 455666544322221 1 12345788999999952 4678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.+.|.+++++.|+|||++||+++++..+||++++|++|+++..|+++++.. +.......|+
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 226 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLL 226 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHHHHH
Confidence 99999999999976558999999999999999999999999999999999988753 2334444443
No 99
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-32 Score=205.08 Aligned_cols=141 Identities=40% Similarity=0.610 Sum_probs=116.6
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+||+.++....+. . ...+.+..+++.+++. .+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 103 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 182 (254)
T PRK14273 103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182 (254)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence 688999876433221 1 1234567788888873 134688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+.++..+.+.|.+++ + +.|||++||+++++.++|||+++|++|+++..|+++++. .+.+++...|+.
T Consensus 183 ~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 250 (254)
T PRK14273 183 PISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTEEYIS 250 (254)
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHhhc
Confidence 999999999999995 3 799999999999999999999999999999999988875 445556655553
No 100
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8e-32 Score=204.96 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++
T Consensus 129 ~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~i 208 (258)
T PRK11701 129 ATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV 208 (258)
T ss_pred HHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 45678899999953367889999999999999999999999999999999999999999999999999876558999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
||+++++..+||++++|++|++++.|+++++.. +.+++...|+
T Consensus 209 sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 252 (258)
T PRK11701 209 THDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQLLV 252 (258)
T ss_pred eCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHHH
Confidence 999999999999999999999999999888743 3344555444
No 101
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.8e-32 Score=203.59 Aligned_cols=130 Identities=37% Similarity=0.575 Sum_probs=111.8
Q ss_pred ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.+|+.++.. ..+.. ...+++.++++.+|++ +..++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 67888877532 11111 1234577889999995 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+..+.+.|.++++ .|+|+|++||+++++..+||++++|++|++++.|+++++..
T Consensus 172 ~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 172 RHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 9999999999875 48999999999999999999999999999999998887643
No 102
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-32 Score=205.65 Aligned_cols=112 Identities=23% Similarity=0.535 Sum_probs=103.1
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
..+.++++.+|+. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|+|||++
T Consensus 132 ~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~ 210 (255)
T PRK11300 132 DRAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLI 210 (255)
T ss_pred HHHHHHHHhCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 3467788999995 578999999999999999999999999999999999999999999999999999976458999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
||+++++.++||++++|++|+++..|+++++..
T Consensus 211 sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 211 EHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred eCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 999999999999999999999999999887643
No 103
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.4e-32 Score=212.30 Aligned_cols=127 Identities=33% Similarity=0.513 Sum_probs=112.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++.. ...+++.++++.+|+. +..++++..||||||||++|||||+++|+++||||||+|||+.++
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 6789988765444322 1234678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.+++.+++++ + ++|||++||+++++.++||||++|++|+++..|+++++
T Consensus 170 ~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 170 VEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred HHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999985 3 79999999999999999999999999999999998876
No 104
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=230.15 Aligned_cols=131 Identities=30% Similarity=0.428 Sum_probs=113.9
Q ss_pred ChHHHhhcCcccc-CCC--ccHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLR-GKK--LTENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||.||+.++.... +.. ...+++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 122 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~ 201 (623)
T PRK10261 122 TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDV 201 (623)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCH
Confidence 6889998765432 221 12356788999999952 357899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
.++..+.++|++++++.|+|||+||||++++..+||||++|++|++++.|+++++.
T Consensus 202 ~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 202 TIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999998666999999999999999999999999999999999987764
No 105
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6e-32 Score=204.39 Aligned_cols=140 Identities=42% Similarity=0.607 Sum_probs=115.5
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+. . ...+++..+++.+++.. +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 97 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 176 (247)
T TIGR00972 97 SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176 (247)
T ss_pred CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 678898875433221 1 12345778899999951 45788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|+++++ ++|||++||+++++..+||++++|++|+++..|+++++.. +.+.....|+
T Consensus 177 ~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
T TIGR00972 177 PIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKRTEDYI 243 (247)
T ss_pred HHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHHh
Confidence 9999999999999864 4899999999999999999999999999999999887643 3344444443
No 106
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.4e-32 Score=202.41 Aligned_cols=128 Identities=28% Similarity=0.423 Sum_probs=108.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHc-CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 79 (146)
|+.+|+.++............+..+++.+ ++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.++.
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 169 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence 57888887643322111233456677777 464 4678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
.+.+.|+++++ .|+|||++||+++++..+||++++|++|+++..|+++++
T Consensus 170 ~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 170 EIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999975 589999999999999999999999999999988877654
No 107
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-32 Score=209.16 Aligned_cols=130 Identities=38% Similarity=0.568 Sum_probs=111.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+... ..+.+.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 181 (280)
T PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR 181 (280)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 67888877543222211 1234677889999963457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.+.+.|.++++ .|+|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 182 ~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 182 KELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999975 4899999999999999999999999999999999887653
No 108
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-32 Score=204.78 Aligned_cols=140 Identities=39% Similarity=0.608 Sum_probs=115.1
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
|+.||+.++....+... ..+++.++++.+++. .+..++++.+|||||+|||+|||||+.+|+++||||||+|||+
T Consensus 108 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 108 SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 67889987643322211 123467788988873 2356788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
.++..+.+.|++++ + |.|||++||+++++.++||++++|++|++++.|+++++.. +.+.+.+.|+
T Consensus 188 ~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK14268 188 ISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDYI 253 (258)
T ss_pred HHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHHh
Confidence 99999999999985 3 7999999999999999999999999999999999988753 3444555444
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.3e-32 Score=203.04 Aligned_cols=140 Identities=29% Similarity=0.446 Sum_probs=114.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+.. ...+.+.++++.+|+. ...++++.+|||||+||++|||||+.+|+++||||||+|||+.++
T Consensus 90 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 168 (236)
T TIGR03864 90 SVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168 (236)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 5788887654332211 1234577889999996 567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC--CCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~~ 142 (146)
..+.+.|.+++++.|.|+|++||+++++.. ||++++|++|++++.|+++++... .......|.
T Consensus 169 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T TIGR03864 169 AAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALGGADLEAAFL 233 (236)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence 999999999975458999999999999975 999999999999999988776432 123444444
No 110
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.5e-32 Score=201.60 Aligned_cols=127 Identities=32% Similarity=0.551 Sum_probs=109.7
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++...++... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 169 (220)
T cd03263 91 TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169 (220)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHH
Confidence 57888877543332211 234577889999995 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.+.+.|.++++ +.|||++||+++.+.++||++++|++|++++.|+++++
T Consensus 170 ~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 170 RAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999864 59999999999999999999999999999998887654
No 111
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-31 Score=203.73 Aligned_cols=125 Identities=23% Similarity=0.421 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
...+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.++.++.|.|+|+
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34577889999995346788999999999999999999999999999999999999999999999999987655899999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
+||+++++..+||++++|++|++++.|+++++.. +.+++.+.|++
T Consensus 205 vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~~~~~~~~~l~ 250 (253)
T TIGR02323 205 VTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVS 250 (253)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999999998887643 34556666654
No 112
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-31 Score=203.56 Aligned_cols=124 Identities=28% Similarity=0.431 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCChh--hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 19 ENEVYKLLSLADLDSS--FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~--~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
.+++.++++.+++... +.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.||
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ti 194 (254)
T PRK10418 115 DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGM 194 (254)
T ss_pred HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEE
Confidence 3567889999999631 46888999999999999999999999999999999999999999999999999976568999
Q ss_pred EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
|++||+++++..+||++++|++|+++..|+++++... .+++...|.
T Consensus 195 l~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
T PRK10418 195 LLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLV 241 (254)
T ss_pred EEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999999999998887543 233444443
No 113
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.7e-32 Score=201.84 Aligned_cols=119 Identities=36% Similarity=0.509 Sum_probs=102.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 6788888764433221 1234677899999996 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
..+.+.|++++++.|+|||++||+++++. +||++++|++|++
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999997645899999999999987 9999999999974
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.4e-32 Score=204.14 Aligned_cols=141 Identities=38% Similarity=0.551 Sum_probs=116.7
Q ss_pred ChHHHhhcCccc-cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.+|+.++... .+.. ...+.+.++++.+++. +..++++.+|||||+||++|||||+.+|+++||||||+|||+.+
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 181 (252)
T TIGR03005 103 TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181 (252)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 577888764221 1111 1234577889999995 57888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+..+.+.|.+++++.|.|+|++||+++++..+||++++|++|++++.|+++++.. +.++....|+
T Consensus 182 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T TIGR03005 182 VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERTREFL 247 (252)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 9999999999976558999999999999999999999999999999999887643 3344555554
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-31 Score=204.69 Aligned_cols=123 Identities=36% Similarity=0.530 Sum_probs=108.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.++.. . ....++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++..
T Consensus 97 tv~enl~~~~~--~--~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 171 (257)
T PRK11247 97 KVIDNVGLGLK--G--QWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171 (257)
T ss_pred cHHHHHHhccc--c--hHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 57888877531 1 1245678899999996 57789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 128 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 128 (146)
+.+.|.++.++.|.|||++||+++++..+||+|++|++|+++.+++.+
T Consensus 172 l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999987656899999999999999999999999999999888754
No 116
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=208.61 Aligned_cols=127 Identities=32% Similarity=0.494 Sum_probs=116.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||+.|+.|+.+.. .......+.+.+|+. ++.+++|..|||||||||+|+|||+..|++|+||||.|+||..-+++
T Consensus 92 tVrgNL~YG~~~~----~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 92 TVRGNLRYGMWKS----MRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred EEecchhhhhccc----chHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 5778888876432 345678899999995 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
++..+.++.++.+.-|++|||.++++.++||+|++|++|++.+.|..+++.+
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999989999999999999999999999999999999999888754
No 117
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.98 E-value=5.4e-32 Score=200.94 Aligned_cols=123 Identities=31% Similarity=0.512 Sum_probs=106.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++.. ...+++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus 94 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 172 (218)
T cd03266 94 TARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172 (218)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHH
Confidence 6788887654333221 1234677899999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.+.+.|.++++ .|+|||++||+++++..+||++++|++|++++.|
T Consensus 173 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 173 RALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999965 4899999999999999999999999999997643
No 118
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.3e-31 Score=202.89 Aligned_cols=140 Identities=35% Similarity=0.555 Sum_probs=114.9
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+.. ...+.+.++++.+++.. +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 99 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 178 (250)
T PRK14245 99 SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178 (250)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 5788887754332211 12345678889898842 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|+++. + ++|||++||+++++.++||++++|++|++++.|+++++.+ +.++....|+
T Consensus 179 ~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14245 179 PISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYI 245 (250)
T ss_pred HHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCChHHHHhh
Confidence 999999999999984 3 7999999999999999999999999999999999988753 3344444554
No 119
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=7.1e-32 Score=206.70 Aligned_cols=129 Identities=29% Similarity=0.427 Sum_probs=110.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 35677766533222111 123567789999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.++++ .|.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 173 ~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 173 TQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999975 4899999999999999999999999999999999887653
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.4e-32 Score=205.44 Aligned_cols=131 Identities=29% Similarity=0.402 Sum_probs=112.3
Q ss_pred ChHHHhhcCcccc-C----C-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR-G----K-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~-~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++.... . . ....+++..+++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 179 (265)
T PRK10575 101 TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 5788888753211 0 1 11234577899999995 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+++.+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 180 ~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999976558999999999999999999999999999999998877643
No 121
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=4.4e-32 Score=203.94 Aligned_cols=130 Identities=31% Similarity=0.435 Sum_probs=108.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHc-CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 79 (146)
||.+|+.++..........+.+.++++.+ ++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++.
T Consensus 96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~ 174 (237)
T PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174 (237)
T ss_pred cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHH
Confidence 57888877532211111223456667777 464 4567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
.+.+.|+++++ .|.|||++||+++++.++||++++|++|+++..|+++++..
T Consensus 175 ~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 175 QIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999875 49999999999999999999999999999999999988753
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.98 E-value=9.4e-32 Score=204.80 Aligned_cols=131 Identities=32% Similarity=0.445 Sum_probs=112.0
Q ss_pred ChHHHhhcCccccCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCC
Q 046954 1 TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA------NEPEVLLLDEPTSA 72 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~------~~p~llllDEPt~~ 72 (146)
|++||+.++...... .....++.++++.+++. ++.++++.+|||||||||+|||||+ .+|++|||||||+|
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~ 170 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170 (258)
T ss_pred CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCccc
Confidence 678898875432211 11234577889999995 5788999999999999999999999 59999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
||+.++..+.+.|++++++.|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 171 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 171 LDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 999999999999999974458999999999999999999999999999999998877643
No 123
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.98 E-value=9.3e-32 Score=205.72 Aligned_cols=123 Identities=24% Similarity=0.399 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+++.++++.+++.....++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++
T Consensus 127 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviiv 206 (267)
T PRK15112 127 KQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206 (267)
T ss_pred HHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 45778899999953467888999999999999999999999999999999999999999999999999976558999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
||+++++..+||++++|++|+++..|+++++... .++....++
T Consensus 207 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred eCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999998877543 344444444
No 124
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.98 E-value=1.3e-31 Score=204.17 Aligned_cols=129 Identities=26% Similarity=0.402 Sum_probs=111.8
Q ss_pred ChHHHhhcCcccc--------C--CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLR--------G--KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~--------~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+.+|+.++.... . ......++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 180 (262)
T PRK09984 102 SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180 (262)
T ss_pred cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCcc
Confidence 5788887653210 0 011234578899999995 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+|||+.+++.+.+.|++++++.|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus 181 ~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999765589999999999999999999999999999999998876
No 125
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=9e-32 Score=198.70 Aligned_cols=142 Identities=29% Similarity=0.390 Sum_probs=117.3
Q ss_pred ChHHHhhcCccccCC-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954 1 TVADNIRYGPQLRGK-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 79 (146)
||.||+.++...... .......+.+++.|-.-.+..+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+
T Consensus 94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~ 173 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173 (237)
T ss_pred cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence 799999998654332 1111114555555532135788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHhh
Q 046954 80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 143 (146)
++.+.|++++++.|.||++|.++...+.+++||.++|++|+|+.+|+.+++... +...+.|++
T Consensus 174 ~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~-~~v~~~yLg 236 (237)
T COG0410 174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD-PDVREAYLG 236 (237)
T ss_pred HHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC-HHHHHHhhC
Confidence 999999999877689999999999999999999999999999999999998653 335555553
No 126
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.3e-32 Score=207.27 Aligned_cols=129 Identities=33% Similarity=0.506 Sum_probs=111.7
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++....+... ..+++.++++.+++. ++.++++.+|||||+||++|||||+.+|++|||||||+|||+.++
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 68899987643332211 124577889999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|+|||++||+++++. +||++++|++|++++.|+++++.
T Consensus 180 ~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 180 EQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999997655899999999999985 79999999999999999987653
No 127
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.98 E-value=8.8e-32 Score=199.27 Aligned_cols=121 Identities=34% Similarity=0.509 Sum_probs=103.2
Q ss_pred ChHHHhhcCccccC----C--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRG----K--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~----~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++..... . ....+++..+++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 164 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 67899887543211 1 11234677899999995 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~ 124 (146)
+.++..+.+.|+++++ .|.|||++||+++++.++||++++|++| +++.
T Consensus 165 ~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 165 PKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 9999999999999976 5899999999999999999999999886 4443
No 128
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.1e-31 Score=206.71 Aligned_cols=129 Identities=29% Similarity=0.479 Sum_probs=111.9
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.|+....+.. ...+++..+++.+|+. .+.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~ 180 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 4678888765432221 1234578889999995 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|.|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 181 ~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 181 REVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999976569999999999999976 9999999999999999988764
No 129
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.3e-31 Score=201.91 Aligned_cols=140 Identities=34% Similarity=0.489 Sum_probs=114.9
Q ss_pred ChHHHhhcCc-cccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++. ...+.. ....++.++++.+|+. .+.++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 98 tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~ 176 (242)
T PRK11124 98 TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHH
Confidence 5778886432 111211 1234577889999996 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+..+.+.|.++.+ .|+|+|++||+++++..+||++++|++|++++.|+++++..+.+.....++
T Consensus 177 ~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 240 (242)
T PRK11124 177 TAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKNYL 240 (242)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCcccHHHHHhh
Confidence 9999999999865 589999999999999999999999999999999998877544344444443
No 130
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.98 E-value=1.9e-31 Score=198.85 Aligned_cols=125 Identities=30% Similarity=0.544 Sum_probs=109.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+++|+.++....+ ....++.++++.+++. ++.++++.+|||||+||++||||++.+|+++||||||+|||+.+++.
T Consensus 86 t~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~ 162 (223)
T TIGR03740 86 TARENLKVHTTLLG--LPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE 162 (223)
T ss_pred CHHHHHHHHHHHcC--CCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHH
Confidence 57888876543322 1345678899999996 57888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 129 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 129 (146)
+.+.|.++++ .|.|||++||+++++.++||++++|++|+++..|++.+
T Consensus 163 l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 163 LRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999975 48999999999999999999999999999999888754
No 131
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1e-31 Score=206.28 Aligned_cols=129 Identities=34% Similarity=0.572 Sum_probs=112.0
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+++. ++.++++.+|||||+||++|||||+.+|+++||||||+|||+.++
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 5788887653222211 1234577889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++ |.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 174 ~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 174 SQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999754 999999999999999999999999999999999988764
No 132
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.1e-31 Score=198.54 Aligned_cols=122 Identities=26% Similarity=0.452 Sum_probs=105.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+.....+.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 166 (211)
T cd03264 88 TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER 166 (211)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5788887754332221 1234577889999995 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
..+.+.|+++++ +.|||++||+++++.++|||+++|++|++++.|
T Consensus 167 ~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 167 IRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999974 589999999999999999999999999998654
No 133
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.98 E-value=2.2e-31 Score=203.77 Aligned_cols=123 Identities=33% Similarity=0.475 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++.|.|+|++
T Consensus 129 ~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiiv 208 (268)
T PRK10419 129 ARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI 208 (268)
T ss_pred HHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 35778899999953467889999999999999999999999999999999999999999999999999976558999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
||+++++..+||++++|++|++++.|+++++....+++...+.
T Consensus 209 sH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 251 (268)
T PRK10419 209 THDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ 251 (268)
T ss_pred ECCHHHHHHhCCEEEEEECCEEeeeCChhhccCCCCHHHHHHH
Confidence 9999999999999999999999999999887655555655554
No 134
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.9e-31 Score=202.92 Aligned_cols=126 Identities=33% Similarity=0.513 Sum_probs=108.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 164 (255)
T PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164 (255)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 6788987754322221 1234578899999996 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE--CCEEEEeeCc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKP 127 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~--~G~i~~~g~~ 127 (146)
..+.+.|.+++++.|+|||++||+++++..+||++++|+ +|++++.++.
T Consensus 165 ~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 165 EQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999865558999999999999999999999998 5999988764
No 135
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.5e-31 Score=205.88 Aligned_cols=129 Identities=32% Similarity=0.525 Sum_probs=111.8
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.||+.++....+.. ...+++..+++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 176 (279)
T PRK13635 98 TVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176 (279)
T ss_pred cHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 6889998764333221 1234578899999996 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|.|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 177 ~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 177 REVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 99999999998655899999999999987 59999999999999999877653
No 136
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.98 E-value=2e-31 Score=197.53 Aligned_cols=125 Identities=31% Similarity=0.454 Sum_probs=107.6
Q ss_pred ChHHHhhcCcccc-C-CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++.... . ......++.++++.+++. +..++++.+|||||+||++||||++.+|+++||||||++||+.++
T Consensus 86 t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 164 (213)
T TIGR01277 86 TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164 (213)
T ss_pred cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 5788987653211 1 111234677899999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
..+.+.|.++.++.|.|||++||+++++..+||++++|++|++++.|+
T Consensus 165 ~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 165 EEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999976558999999999999999999999999999988764
No 137
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=9.8e-32 Score=222.02 Aligned_cols=129 Identities=33% Similarity=0.470 Sum_probs=112.0
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+++|+.++....+.+ ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 126 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~ 204 (520)
T TIGR03269 126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTA 204 (520)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence 5788887754332221 1234678899999996 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
..+.+.|++++++.|+|||+||||++.+.++||+|++|++|+++..|+++++
T Consensus 205 ~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 205 KLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH
Confidence 9999999999766699999999999999999999999999999988887654
No 138
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.9e-31 Score=204.79 Aligned_cols=128 Identities=32% Similarity=0.456 Sum_probs=110.3
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+.. ...+++.++++.+++. .+.++++.+|||||+||++|||||+.+|+++||||||+|||+.++
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 172 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 5788888764332221 1234577889999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|+++++ .|.|||++||+++++ ..||++++|++|++++.|+++++.
T Consensus 173 ~~l~~~l~~l~~-~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 173 IAVLERIKKLHE-KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999975 599999999999998 469999999999999999887753
No 139
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.8e-31 Score=200.20 Aligned_cols=124 Identities=27% Similarity=0.428 Sum_probs=105.8
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+|+. +..++++.+||||||||++||||++.+|++|||||||+|||+.++
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 6788987754322211 1234578899999996 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
..+.+.|.+++++.|+|||++||+++++.. +|++++|++|++++.++
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 999999999975458999999999999887 57999999999988765
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.2e-31 Score=202.23 Aligned_cols=129 Identities=29% Similarity=0.438 Sum_probs=111.0
Q ss_pred ChHHHhhcCccc----cCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQL----RGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~----~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++... .+. .....++.++++.+++. ++.++++.+|||||+||++||||++.+|++|||||||+|||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 170 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 578888875311 111 11234577889999995 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.++..+.+.|.++++ .|+|||++||+++++.++||++++|++|+++..|+++++.
T Consensus 171 ~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 171 INHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999875 4899999999999999999999999999999998887764
No 141
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=203.44 Aligned_cols=130 Identities=29% Similarity=0.372 Sum_probs=111.3
Q ss_pred ChHHHhhcCcccc-----CC-CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR-----GK-KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++.... .. .....++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||
T Consensus 97 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 5778887652111 01 11234577889999995 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.++..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++.
T Consensus 176 ~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 176 ISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999997645899999999999999999999999999999999887764
No 142
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.4e-31 Score=199.91 Aligned_cols=142 Identities=35% Similarity=0.576 Sum_probs=117.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+++. .+.++++.+|||||+||++||||++.+|++++|||||+|||+.++
T Consensus 87 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~ 165 (235)
T cd03299 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165 (235)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHH
Confidence 5778887654322211 1234567889999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 143 (146)
..+.+.|++++.+.|+|+|++||+++++..+||++++|++|++++.|+++++... ..+....+.+
T Consensus 166 ~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd03299 166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLG 231 (235)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCcccHHHHHHhC
Confidence 9999999998765589999999999999999999999999999999988776432 2345555544
No 143
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.9e-31 Score=200.66 Aligned_cols=141 Identities=37% Similarity=0.562 Sum_probs=116.1
Q ss_pred ChHHHhhcCccccCC----CccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGK----KLTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|++||+.++....+. ....+++..+++.+++.. ...++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 678999876433221 112335678899999842 3467888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
|+.++..+.+.|.++. + |+|+|++||+++++.++||++++|++|++++.|+++++.. +..++...|++
T Consensus 174 D~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (246)
T PRK14269 174 DPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLS 242 (246)
T ss_pred CHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCCcHHHHHHhh
Confidence 9999999999999985 3 8999999999999999999999999999999999888753 33445555554
No 144
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.6e-31 Score=200.67 Aligned_cols=130 Identities=39% Similarity=0.613 Sum_probs=110.4
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+.. ...+++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD 181 (253)
T PRK14242 102 SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181 (253)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6789998764332211 12345777889988842 24578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..+.+.|++++ + +.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 182 ~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 182 PIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999995 3 7899999999999999999999999999999999887643
No 145
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.6e-31 Score=201.19 Aligned_cols=140 Identities=37% Similarity=0.517 Sum_probs=114.9
Q ss_pred ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.||+.++...... . ...+++.++++.+++.. +..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L 177 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 678999875432211 1 11345778899999842 3468889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
|+.++..+.+.|.+++ + |.|+|++||+++++..+||++++|++|++++.|+++++... .+++.+.|.
T Consensus 178 D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14247 178 DPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEKYV 245 (250)
T ss_pred CHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCccHHHHHHh
Confidence 9999999999999985 3 79999999999999999999999999999999998876432 334545443
No 146
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.5e-31 Score=197.59 Aligned_cols=122 Identities=31% Similarity=0.548 Sum_probs=105.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~ 164 (210)
T cd03269 86 KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164 (210)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 6788887754332221 1234577889999996 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~ 124 (146)
..+.+.|+++++ .|.|||++||+++++.++||++++|++|++++.
T Consensus 165 ~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 165 ELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 999999999875 489999999999999999999999999999764
No 147
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=9.7e-32 Score=191.25 Aligned_cols=122 Identities=36% Similarity=0.515 Sum_probs=110.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|..||+.+++.+.+.. .....+.++++.+||. .....||++|||||+|||+||||++..|++|+.||||.+||..+.
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg 182 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence 4579999998877632 3345688999999996 578889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~ 124 (146)
+++.+++..+.++.|.|.++||||+..+.+ |+|++-|+.|+++++
T Consensus 183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 183 DKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 999999999999999999999999998877 999999999999753
No 148
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.4e-31 Score=199.53 Aligned_cols=141 Identities=33% Similarity=0.546 Sum_probs=116.9
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++...++.. ...+++..+++.+++. ++.++.+.+||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus 88 t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 166 (232)
T cd03300 88 TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5678887654332211 1234577889999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
..+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+.+++... .+++...|+
T Consensus 167 ~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 231 (232)
T cd03300 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231 (232)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCchHHHHHhc
Confidence 9999999999764589999999999999999999999999999999988776432 334555554
No 149
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.8e-31 Score=199.74 Aligned_cols=128 Identities=30% Similarity=0.479 Sum_probs=108.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcC-CChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLAD-LDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 79 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 79 (146)
|+.+|+.++...+.. ...+.+.++++.++ +. ...++++.+|||||+||++|||||+.+|+++||||||+|||+.++.
T Consensus 91 tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~ 168 (230)
T TIGR03410 91 TVEENLLTGLAALPR-RSRKIPDEIYELFPVLK-EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168 (230)
T ss_pred cHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 577888765433221 11233566777776 43 4678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 80 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 80 ~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
.+.+.|.+++++.|+|+|++||+++++..+||++++|++|++++.|+++++
T Consensus 169 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999998764589999999999999999999999999999999998876
No 150
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-31 Score=200.75 Aligned_cols=130 Identities=25% Similarity=0.487 Sum_probs=111.7
Q ss_pred ChHHHhhcCccccC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++..... .. .....+.++++.+++. ...++++.+|||||+||++||||++.+|++|||||||+|||+.+
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 57888877543221 11 1234577889999995 56788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+..+.+.+.++++ .|.|+|++||+++++..+||++++|++|++++.|+++++..
T Consensus 173 ~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 173 VIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999875 58999999999999999999999999999999999887643
No 151
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=1.6e-31 Score=197.54 Aligned_cols=118 Identities=37% Similarity=0.601 Sum_probs=101.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+.. ....++.++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||+|||+.++
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 170 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR 170 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5778887653322211 1234577889999995 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
..+.+.|.+++++ |+|||++||+++++..+||++++|++|+
T Consensus 171 ~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 171 RELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999764 8999999999999999999999999985
No 152
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=2.3e-31 Score=197.93 Aligned_cols=120 Identities=28% Similarity=0.477 Sum_probs=102.1
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.++....... ...+++.++++.++++ +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 5788887653222111 1234577889999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~ 122 (146)
..+.+.|.+++++.|.|||++||+++++.. +|++++|++|+++
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999976558999999999998865 7999999999975
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=203.71 Aligned_cols=129 Identities=32% Similarity=0.488 Sum_probs=111.1
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+... ..+++..+++.+++. .+.++++.+|||||+||++|||||+.+|++|||||||+|||+.++
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~ 176 (277)
T PRK13642 98 TVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176 (277)
T ss_pred CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 67889987643222211 124567889999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.|.|||++||+++++. .||++++|++|++++.|+++++.
T Consensus 177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999997655999999999999986 59999999999999999987764
No 154
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=2.1e-31 Score=200.67 Aligned_cols=129 Identities=23% Similarity=0.350 Sum_probs=110.8
Q ss_pred ChHHHhhcCcccc--------CC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+.||+.++.... +. .....++..+++.+++. +..++++.+|||||+|||+||||++.+|++|||||||
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 6788887753211 01 11234577889999996 5778899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+|||+.++..+.+.|+++++ +.|||++||+++++..+||++++|++|++++.|+++++..
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 172 AGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred cCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999964 6899999999999999999999999999999998887753
No 155
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.1e-31 Score=207.11 Aligned_cols=140 Identities=41% Similarity=0.592 Sum_probs=114.7
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+++|+.|+....+... ..+.+..+++.+++.. ...++++.+||||||||++||||++.+|++|||||||++||
T Consensus 178 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD 257 (329)
T PRK14257 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257 (329)
T ss_pred cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 68899998653322111 1223567788887632 24578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 142 (146)
+.+...+.+.|.++.+ ++|+|+|||+++++.++||||++|++|++++.|+++++. .+.++....|+
T Consensus 258 ~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~~~~~~~~ 324 (329)
T PRK14257 258 PIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYI 324 (329)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHHh
Confidence 9999999999999864 699999999999999999999999999999999999974 34444445554
No 156
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-31 Score=199.47 Aligned_cols=141 Identities=38% Similarity=0.602 Sum_probs=115.6
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|++||+.++....+... ..+++.++++.+++. ....++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14251 100 SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179 (251)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCC
Confidence 67899977543222111 124567788888883 134678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
+.++..+.+.|.++. + +.|||++||+++++.++||++++|++|+++..|+++++. .+.+.+.+.|++
T Consensus 180 ~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14251 180 PISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITSDYLN 247 (251)
T ss_pred HHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence 999999999999985 3 689999999999999999999999999999999988864 344556666654
No 157
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=2.3e-31 Score=198.88 Aligned_cols=123 Identities=28% Similarity=0.378 Sum_probs=105.9
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~ 178 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 6788988764333221 1123567788899995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.+.+.|.+++++ |.|||++||+++++..+||++++|++|++++.|
T Consensus 179 ~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 179 EKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999764 899999999999999999999999999998654
No 158
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-31 Score=200.79 Aligned_cols=140 Identities=37% Similarity=0.552 Sum_probs=114.1
Q ss_pred ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.||+.++....+. . ....++..+++.+++.. ...++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 180 (253)
T PRK14267 101 TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180 (253)
T ss_pred cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 678888775432211 1 11235677888888742 3467889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
|+.++..+.+.|+++++ ++|||++||+++++..+||++++|++|++++.|+++++.. +.+++...|+
T Consensus 181 D~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK14267 181 DPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYV 248 (253)
T ss_pred CHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHh
Confidence 99999999999999863 6899999999999999999999999999999999888743 3334555554
No 159
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-31 Score=198.97 Aligned_cols=140 Identities=36% Similarity=0.565 Sum_probs=113.6
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+... ..+++..+++.+++.. +..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14239 101 SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180 (252)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 67899987643222111 1345667788888732 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|+++.+ +.|||++||+++++..+||++++|++|++++.|+++++.. +.......|+
T Consensus 181 ~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14239 181 PISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDYI 247 (252)
T ss_pred HHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 9999999999999853 6899999999999999999999999999999999888743 3344444443
No 160
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-31 Score=199.47 Aligned_cols=140 Identities=40% Similarity=0.627 Sum_probs=115.0
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+.. ....++.++++.+++. ....++++.+||||||||++||||++.+|+++||||||+|||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14270 100 SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179 (251)
T ss_pred cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6789998764332211 1134566788888873 134678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 142 (146)
+.++..+.+.|+++.+ +.|+|++||+++++.++|||+++|++|++++.|+++++. .+.++....|+
T Consensus 180 ~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14270 180 PISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYI 246 (251)
T ss_pred HHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCCChHHHHhh
Confidence 9999999999999864 589999999999999999999999999999999998874 33445555554
No 161
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=4.4e-31 Score=197.19 Aligned_cols=129 Identities=32% Similarity=0.458 Sum_probs=109.9
Q ss_pred ChHHHhhcCcccc----CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR----GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++.... ... ...+++..+++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 4678887653211 011 1234577889999996 57788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..+.+.|.++++ .|.|+|++||+++++.++||+++++ +|+++..|+++++..
T Consensus 146 ~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 146 MPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999999999975 4999999999999999999999999 899999999887644
No 162
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.3e-31 Score=200.56 Aligned_cols=140 Identities=39% Similarity=0.619 Sum_probs=114.5
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|++||+.++....+... ..+++..+++.+++.. +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 108 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 187 (259)
T PRK14274 108 SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187 (259)
T ss_pred CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 67899987643332111 1234667888888742 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|.++. + +.|+|++||+++.+.++||++++|++|++++.|+++++.. +.++....|+
T Consensus 188 ~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (259)
T PRK14274 188 PVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTLDYI 254 (259)
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCCHHHHHhh
Confidence 999999999999985 3 7899999999999999999999999999999999988743 3344444444
No 163
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-31 Score=219.30 Aligned_cols=130 Identities=22% Similarity=0.356 Sum_probs=111.1
Q ss_pred ChHHHhhcCcc--ccC---CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQ--LRG---KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~--~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.||+.++.. ... .. ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~L 436 (506)
T PRK13549 357 GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436 (506)
T ss_pred CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence 57888876531 111 01 122457789999999523578999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
|+.+++.+.++|.++++ +|.|||++|||++++.++|||+++|++|+++..|+++++.
T Consensus 437 D~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 437 DVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999976 4999999999999999999999999999999999888763
No 164
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=4.2e-31 Score=200.81 Aligned_cols=129 Identities=29% Similarity=0.393 Sum_probs=111.3
Q ss_pred ChHHHhhcCccc----cCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQL----RGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~----~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||.+|+.++... .... ...+++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 169 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD 169 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 678998875311 1111 1234577889999995 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.++..+.+.|.++++ .|.|||++||+++++.++||+|++|++|++++.|+++++.
T Consensus 170 ~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 170 VRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999975 4899999999999999999999999999999999987764
No 165
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=3.4e-31 Score=199.46 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
+++.++++.+++.....++++. +||||||||++|||||+.+|+++||||||++||+.++..+.+.|.++++ .|.|||+
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~ 199 (243)
T TIGR01978 121 KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLI 199 (243)
T ss_pred HHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEE
Confidence 4577889999996445677776 5999999999999999999999999999999999999999999999975 5899999
Q ss_pred EecCHHHHHhh-cCeEEEEECCEEEEeeCccccc
Q 046954 99 VSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 99 itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+||+++++..+ ||++++|++|++++.|+++++.
T Consensus 200 vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 200 ITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999998 8999999999999999887553
No 166
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.3e-31 Score=199.00 Aligned_cols=140 Identities=34% Similarity=0.534 Sum_probs=114.6
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+. . ...+++.++++.+++.. +..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD 180 (252)
T PRK14256 101 SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180 (252)
T ss_pred cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 578888765432221 1 11345677888888742 24567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 142 (146)
+.++..+.+.|+++++ +.|||++||+++++.++||++++|++|++++.|+++++. .+.++....|+
T Consensus 181 ~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14256 181 PISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYI 247 (252)
T ss_pred HHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence 9999999999999964 689999999999999999999999999999999988864 33445555555
No 167
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=2.3e-31 Score=197.00 Aligned_cols=119 Identities=33% Similarity=0.487 Sum_probs=102.6
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 5788887764332211 1234577889999995 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
..+.+.|+++++ .|.|+|++||+++++..+||++++|++|++
T Consensus 173 ~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 173 WEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999865 489999999999999999999999999974
No 168
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=5.1e-31 Score=196.41 Aligned_cols=121 Identities=30% Similarity=0.396 Sum_probs=104.1
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 57888877543322211 123567889999996 567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~ 123 (146)
..+.+.|.++++ .|.|+|++||+++++..+||++++|++|+++.
T Consensus 174 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 174 EGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999975 48999999999999999999999999999864
No 169
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.7e-31 Score=200.19 Aligned_cols=140 Identities=36% Similarity=0.532 Sum_probs=114.3
Q ss_pred ChHHHhhcCcccc-CCC--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR-GKK--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+++|+.++.... ... ...+++.++++.+++. ....++++.+|||||+||++|||||+.+|++|||||||+|||
T Consensus 109 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 188 (260)
T PRK10744 109 SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188 (260)
T ss_pred cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCC
Confidence 6788988764322 111 1134577889999873 135678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|++++ + +.|||++||+++.+..+||++++|++|++++.|+++++.. +.++....|+
T Consensus 189 ~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 255 (260)
T PRK10744 189 PISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYI 255 (260)
T ss_pred HHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence 999999999999995 3 7899999999999999999999999999999999888743 3344444443
No 170
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-31 Score=218.56 Aligned_cols=129 Identities=27% Similarity=0.479 Sum_probs=112.4
Q ss_pred ChHHHhhcCcccc--C-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLR--G-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~--~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
|++||+.++...+ + .. ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 6889998865322 1 11 1134578899999996 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
.++..+.+.|.++++ .|.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 177 ~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 177 SETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999975 5999999999999999999999999999999999887763
No 171
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.9e-31 Score=200.03 Aligned_cols=140 Identities=34% Similarity=0.551 Sum_probs=113.4
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+++|+.++....... ...+.+..+++.+++.. +..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 117 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 196 (268)
T PRK14248 117 SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196 (268)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccC
Confidence 5788887754322211 11234667788888741 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|+++++ +.|||++||+++++.++||++++|++|++++.|+++++.. +.++....|+
T Consensus 197 ~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 263 (268)
T PRK14248 197 PISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYI 263 (268)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHHH
Confidence 9999999999999853 6899999999999999999999999999999999887643 3344444454
No 172
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=5.8e-31 Score=196.71 Aligned_cols=121 Identities=36% Similarity=0.554 Sum_probs=103.3
Q ss_pred ChHHHhhcCccccCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++...... ....+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 578888765322221 11235678899999996 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~ 123 (146)
..+.+.|++++++.|.|||++||+++++. .||++++|++|++++
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999999997655899999999999885 599999999999875
No 173
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=2.5e-31 Score=196.85 Aligned_cols=118 Identities=36% Similarity=0.545 Sum_probs=101.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 5778887754322211 1234677899999996 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
..+.+.|+++++ .|+|||++||+++++..+||++++|++|+
T Consensus 174 ~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 174 ERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999875 48999999999999999999999999985
No 174
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.6e-31 Score=198.80 Aligned_cols=140 Identities=37% Similarity=0.599 Sum_probs=113.5
Q ss_pred ChHHHhhcCccccCCC----ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK----LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.+|+.++....... ...+.+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 101 tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~L 180 (251)
T PRK14244 101 SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180 (251)
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 5788887753222211 12234677889999852 2356788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
|+.++..+.+.|.++. + |+|||++||+++++.++||++++|++|++++.|+++++.. +.++....|.
T Consensus 181 D~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14244 181 DPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKRYI 248 (251)
T ss_pred CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCChHHHHhc
Confidence 9999999999999985 3 8999999999999999999999999999999999888753 3344444443
No 175
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.4e-31 Score=200.45 Aligned_cols=140 Identities=34% Similarity=0.581 Sum_probs=114.4
Q ss_pred ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.||+.++...++. . ...+++.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 194 (267)
T PRK14235 115 SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194 (267)
T ss_pred cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 678999876432221 1 11345678899999852 2457789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
|+.++..+.+.|+++++ +.|||++||+++.+..+||++++|++|++++.|+++++.. +.++....|+
T Consensus 195 D~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 262 (267)
T PRK14235 195 DPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDPRTQDYI 262 (267)
T ss_pred CHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHh
Confidence 99999999999999863 6899999999999999999999999999999999887643 3344444443
No 176
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.8e-31 Score=217.75 Aligned_cols=130 Identities=24% Similarity=0.412 Sum_probs=111.0
Q ss_pred ChHHHhhcCcccc----C---CC-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 046954 1 TVADNIRYGPQLR----G---KK-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA 72 (146)
Q Consensus 1 tv~eni~~~~~~~----~---~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~ 72 (146)
|+.||+.++.... + .. ...+.+.++++.+++..+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 5778887653211 0 11 11245778999999943467899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
||+.+++.+.++|.++++ .|.|||++|||++++.++||++++|++|++++.|+++++.
T Consensus 427 LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999975 5999999999999999999999999999999999887653
No 177
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=7.4e-31 Score=198.84 Aligned_cols=130 Identities=26% Similarity=0.381 Sum_probs=111.0
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc-------CCCEEEeeCCCCC
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN-------EPEVLLLDEPTSA 72 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~-------~p~llllDEPt~~ 72 (146)
|+.+|+.++....... ...+++.++++.+++. +..++++.+||||||||++|||||+. +|+++||||||+|
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~ 163 (248)
T PRK03695 85 PVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS 163 (248)
T ss_pred cHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCccc
Confidence 5788888753221111 1234678899999995 56789999999999999999999998 6799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
||+.++..+.+.|+++++ .|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 164 LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 164 LDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 999999999999999975 48999999999999999999999999999999998877643
No 178
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=217.66 Aligned_cols=128 Identities=34% Similarity=0.460 Sum_probs=111.4
Q ss_pred ChHHHhhcCcccc---C-CCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR---G-KKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~---~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+||+.++...+ + ... ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 173 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALT 173 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCC
Confidence 6889998864321 1 111 134577889999996 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.++..+.+.|.++++ .|.|||++|||++++..+||+|++|++|+++..|+++++
T Consensus 174 ~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 174 DTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999975 489999999999999999999999999999999988765
No 179
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=3.5e-31 Score=218.69 Aligned_cols=130 Identities=31% Similarity=0.525 Sum_probs=110.3
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCCh----hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDS----SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||.+|+.++....... ...+++.++++.+++.. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 5778887642211111 12345778899999953 257899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
.+++.+.+.|++++++.|.|||++|||++++.++||++++|++|++++.|+++++
T Consensus 461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999765689999999999999999999999999999998887665
No 180
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=200.08 Aligned_cols=140 Identities=36% Similarity=0.572 Sum_probs=113.9
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.||+.++....+.. ...+++.++++.+++. .+..++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 109 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~ 188 (269)
T PRK14259 109 SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPI 188 (269)
T ss_pred hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 6789998765432221 1234566778888763 23568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-----------CEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----------GEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-----------G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.++|.+++ + +.|||++||+++++..+||++++|++ |++++.|+++++.. +.+++...++
T Consensus 189 ~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 264 (269)
T PRK14259 189 STLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYI 264 (269)
T ss_pred HHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCcCChHHHHHH
Confidence 9999999999985 3 78999999999999999999999996 67899999988743 3445555554
No 181
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=1.5e-30 Score=195.82 Aligned_cols=142 Identities=37% Similarity=0.563 Sum_probs=118.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++.. ...+.+.++++.+++. .+.++.+.+||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus 88 t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 166 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVR 166 (237)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5788887654332221 1234577889999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|.+++++.|+|||++||+++++.++||++++|++|++++.|+.+++.. +..++...|++
T Consensus 167 ~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 167 KELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 999999999876448999999999999999999999999999999999888753 33455555554
No 182
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-31 Score=201.74 Aligned_cols=129 Identities=30% Similarity=0.519 Sum_probs=109.9
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++........ ....+.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~ 178 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 67899987643222111 223577889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|.+++++.+.|||++||+++.+. +||++++|++|+++..|+++++.
T Consensus 179 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999997643599999999999985 79999999999999998877653
No 183
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=7.1e-31 Score=197.56 Aligned_cols=124 Identities=29% Similarity=0.457 Sum_probs=105.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+....++.. ...+++..+++.+++. +..++++.+||||||||++||+||+.+|+++||||||+|||+.++
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 189 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ 189 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 5778887654332221 1133567788999995 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.+.+.|.+++++.|.|||++||+++++..+||++++|++|++++.|
T Consensus 190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999997655899999999999999999999999999997654
No 184
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=3.6e-31 Score=219.06 Aligned_cols=113 Identities=29% Similarity=0.466 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 19 ENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
.+++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++.|+||
T Consensus 131 ~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 210 (529)
T PRK15134 131 RGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGL 210 (529)
T ss_pred HHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeE
Confidence 356788999999963 246889999999999999999999999999999999999999999999999999976558999
Q ss_pred EEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 97 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
|+||||++++..+||||++|++|++++.|+++++.
T Consensus 211 i~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 211 LFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999887764
No 185
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=201.38 Aligned_cols=140 Identities=43% Similarity=0.604 Sum_probs=114.3
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+.. ...+.+.++++.+++. .+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 135 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD 214 (286)
T PRK14275 135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214 (286)
T ss_pred CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 6789998764322211 1124466778888873 235678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|+++++ +.|||++||+++++..+||++++|++|+++..|+++++.. +.+++.+.|+
T Consensus 215 ~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~~~~~~~~~~ 281 (286)
T PRK14275 215 PKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTEDYI 281 (286)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence 9999999999999863 6899999999999999999999999999999999887743 3344555544
No 186
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=6.6e-31 Score=216.77 Aligned_cols=127 Identities=28% Similarity=0.446 Sum_probs=111.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.||+.++... .....+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 102 tv~e~l~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~ 178 (510)
T PRK15439 102 SVKENILFGLPK--RQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETER 178 (510)
T ss_pred cHHHHhhccccc--chHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 578888776421 112245678899999996 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.+.|+++++ .|+|||++|||++++..+||+|++|++|++++.|+++++.
T Consensus 179 l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 179 LFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999975 4999999999999999999999999999999999887663
No 187
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=198.93 Aligned_cols=140 Identities=38% Similarity=0.560 Sum_probs=113.1
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+. . ...+.+.++++.+++. .+..++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus 101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (258)
T PRK14241 101 SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 (258)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 678888775432221 1 1134567788888873 135678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|.+++ + ++|||++||+++++.++||++++|+ +|++++.|+++++.. +.+.....|+
T Consensus 181 ~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK14241 181 PISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPTQKATEDYI 253 (258)
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhCcCcHHHHHHH
Confidence 999999999999995 3 6899999999999999999999997 799999999887643 2334444443
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=196.85 Aligned_cols=141 Identities=37% Similarity=0.583 Sum_probs=114.6
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+... ..+.+..+++.+++.. ++.++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 179 (251)
T PRK14249 100 SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179 (251)
T ss_pred cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 67899987643322211 1234566777777641 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
+.++..+.++|.++. + +.|||++||+++++..+||++++|++|++++.|+++++.. +..+....|+.
T Consensus 180 ~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14249 180 PVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTEDYIT 247 (251)
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCCChHHHHHHh
Confidence 999999999999984 3 8999999999999999999999999999999999888743 34444555554
No 189
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.3e-31 Score=200.34 Aligned_cols=130 Identities=30% Similarity=0.419 Sum_probs=110.0
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....... ...+++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||+.++
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~ 178 (269)
T PRK13648 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178 (269)
T ss_pred cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 4567777654322211 1234567889999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..+.+.|.+++++.|+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 179 ~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 179 QNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999876558999999999999975 99999999999999999877643
No 190
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=197.76 Aligned_cols=132 Identities=34% Similarity=0.550 Sum_probs=110.9
Q ss_pred ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+. .. ..+.+.++++.+++.. +..++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 103 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD 182 (261)
T PRK14258 103 SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182 (261)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 578888765322221 11 1234677888888732 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-----CEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----GEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-----G~i~~~g~~~~~~~ 132 (146)
+.++..+.+.|.+++++.|.|||++||+++++.++||+|++|++ |++++.|+++++..
T Consensus 183 ~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 99999999999998754589999999999999999999999999 99999999988754
No 191
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=195.67 Aligned_cols=140 Identities=39% Similarity=0.586 Sum_probs=112.9
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+.. ...+++.++++.+++.. +..++++.+|||||+|||+|||||+.+|+++||||||+|||
T Consensus 98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 177 (249)
T PRK14253 98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177 (249)
T ss_pred cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 5788887754322211 11234566788887742 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|.++++ +.|||++||+++++..+||++++|++|++++.|+++++.. +.++....|+
T Consensus 178 ~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (249)
T PRK14253 178 PIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYV 244 (249)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCChHHHHHh
Confidence 9999999999999964 5899999999999999999999999999999999887643 3344444444
No 192
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=200.23 Aligned_cols=131 Identities=27% Similarity=0.409 Sum_probs=111.6
Q ss_pred ChHHHhhcCcccc----CC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh---------cCCCEEE
Q 046954 1 TVADNIRYGPQLR----GK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA---------NEPEVLL 65 (146)
Q Consensus 1 tv~eni~~~~~~~----~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~---------~~p~lll 65 (146)
|+.||+.++.... +. ....+.+..+++.+++. ++.++++.+|||||+|||+|||||+ .+|++||
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll 177 (272)
T PRK13547 99 SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177 (272)
T ss_pred cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE
Confidence 6789987753211 10 11234577889999995 5778999999999999999999999 5999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|||||+|||+.++..+.+.|.++.++.|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 178 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 178 LDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999976558999999999999999999999999999999998877643
No 193
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=194.33 Aligned_cols=131 Identities=30% Similarity=0.400 Sum_probs=119.4
Q ss_pred ChHHHhhcCccccC--C--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRG--K--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
||+|-+.||...|. . ..+...+.++++.++|. ++.+++..+||||||||+.||+.++++.++++||||.++||..
T Consensus 91 TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmk 169 (252)
T COG4604 91 TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169 (252)
T ss_pred EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchH
Confidence 68899999864442 2 23345688999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
....+++.|++++++.|+||++|-||++++..|+|.|+-|++|+++..|+++++..
T Consensus 170 Hsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999764
No 194
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=196.47 Aligned_cols=140 Identities=45% Similarity=0.613 Sum_probs=113.4
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+.. ...+++.++++.+++.. +..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 99 t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (250)
T PRK14240 99 SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178 (250)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 5788998764332211 12345677788887631 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|+++. + +.|||++||+++.+..+||++++|++|+++..|+++++.. +.++....|+
T Consensus 179 ~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14240 179 PISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTEDYI 245 (250)
T ss_pred HHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCChHHHHhh
Confidence 999999999999985 3 7899999999999999999999999999999999887643 3344444443
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.4e-31 Score=216.35 Aligned_cols=129 Identities=28% Similarity=0.373 Sum_probs=111.5
Q ss_pred ChHHHhhcCccc----cCC---C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954 1 TVADNIRYGPQL----RGK---K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS 71 (146)
Q Consensus 1 tv~eni~~~~~~----~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~ 71 (146)
||.||+.++... ++. . ...+++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~ 174 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 578898875421 111 1 1134577889999996 56789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
|||+.++..+.+.|+++++ .|+|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 175 ~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 175 SLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999975 4999999999999999999999999999999999887753
No 196
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=9e-31 Score=193.66 Aligned_cols=119 Identities=40% Similarity=0.587 Sum_probs=102.2
Q ss_pred ChHHHhhcCcc-ccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.||+.++.. .++.. ...+++.++++.+++. +..++++.+|||||+||++|||||+.+|+++||||||+|||+.+
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 57788877532 11111 1234577889999995 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
+..+.+.|.++++ .|.|||++||+++++.++||++++|++|++
T Consensus 171 ~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 171 VGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999975 489999999999999999999999999974
No 197
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.3e-31 Score=198.16 Aligned_cols=130 Identities=28% Similarity=0.492 Sum_probs=117.9
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||.|.+.|.+.+.+.+. .+.++..||+++++. .+..+++.+||.|++|++.+..+++++|+++|||||||||||.+.
T Consensus 88 tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~ 166 (300)
T COG4152 88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166 (300)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhH
Confidence 67888888888777653 345688999999996 567888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+.+.+.++++ .|.|||++||.|+.++++||++++|++|+.|..|+.+++..
T Consensus 167 elLk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 167 ELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999975 59999999999999999999999999999999999887643
No 198
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=197.00 Aligned_cols=140 Identities=36% Similarity=0.582 Sum_probs=112.7
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.+|+.++....+.. ...+++..+++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 106 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 185 (264)
T PRK14243 106 SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185 (264)
T ss_pred cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 5788888764322211 12344566777777631 2467789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE---------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.+.|.++++ +.|||++||+++++.++||++++|+ +|++++.|+++++.. +.+.....++
T Consensus 186 ~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 259 (264)
T PRK14243 186 STLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259 (264)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence 99999999999964 5899999999999999999999998 899999999988743 3344444443
No 199
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=195.64 Aligned_cols=140 Identities=37% Similarity=0.602 Sum_probs=114.9
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+||+.++....+.. ..+..+.++++.+++.. ...++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD 181 (253)
T PRK14261 102 SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181 (253)
T ss_pred cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6889998765433211 11234667788887732 24678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|.++++ +.|||++||+++++.++||++++|++|+++..|+++++.. +.+++.+.|+
T Consensus 182 ~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK14261 182 PIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENYI 248 (253)
T ss_pred HHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCcHHHHHHh
Confidence 9999999999999864 6899999999999999999999999999999999888753 3345666555
No 200
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=214.07 Aligned_cols=130 Identities=25% Similarity=0.422 Sum_probs=110.7
Q ss_pred ChHHHhhcCccc-c----C-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 046954 1 TVADNIRYGPQL-R----G-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA 72 (146)
Q Consensus 1 tv~eni~~~~~~-~----~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~ 72 (146)
|+.+|+.++... . + .. ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 578888764311 0 1 11 11345778999999942467899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
||+.++..+.+.|+++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus 426 LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred CCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999975 4999999999999999999999999999999999887763
No 201
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.4e-30 Score=213.74 Aligned_cols=111 Identities=23% Similarity=0.418 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++.++++.+++. ++.++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+.+.|.++++ .|.|||+
T Consensus 113 ~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii 190 (490)
T PRK10938 113 PARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVL 190 (490)
T ss_pred HHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEE
Confidence 34577889999995 578999999999999999999999999999999999999999999999999999976 4999999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+||+++.+.++||++++|++|+++..|+++++.
T Consensus 191 ~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 191 VLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999998877653
No 202
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=194.51 Aligned_cols=140 Identities=44% Similarity=0.647 Sum_probs=113.8
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+++|+.++....+.. ...+.+..+++.+++.. ...++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD 178 (250)
T PRK14262 99 SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178 (250)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 5788888754322211 12234667888888742 24678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
+.++..+.+.|.+++ + ++|+|++||+++.+..+||++++|++|+++..|+++++... .+.+...|+
T Consensus 179 ~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14262 179 PIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTEEYL 245 (250)
T ss_pred HHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCChHHHHHh
Confidence 999999999999986 3 78999999999999999999999999999999998877532 234555544
No 203
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=213.58 Aligned_cols=128 Identities=25% Similarity=0.397 Sum_probs=110.5
Q ss_pred ChHHHhhcCccc-cCC--C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQL-RGK--K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~-~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||.+|+.++... .+. . ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~ 167 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 678998876421 111 1 1124577889999996 467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
.++..+.+.|+++++ .|.|||++||+++++..+||++++|++|+++..|+++++
T Consensus 168 ~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 168 KEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999975 599999999999999999999999999999999988765
No 204
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=194.29 Aligned_cols=130 Identities=38% Similarity=0.609 Sum_probs=107.8
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+... ..+++.+.++.+++. .+..++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14255 101 SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180 (252)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 57888877543222111 123456677777763 135678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..+.+.|.++.+ +.|+|++||+++++.++||+|++|++|+++..|++.++..
T Consensus 181 ~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 181 PISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999964 5899999999999999999999999999999998877653
No 205
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-30 Score=212.06 Aligned_cols=130 Identities=23% Similarity=0.338 Sum_probs=111.4
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.+.....+... ..+.+..+++.+++. ++.++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 67899877543222211 123466788999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..+.+.|.++++ .|.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 180 ~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 180 KKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999864 58999999999999999999999999999999998877643
No 206
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=214.07 Aligned_cols=126 Identities=25% Similarity=0.423 Sum_probs=107.5
Q ss_pred ChHHHhhcCcccc--------CC-C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLR--------GK-K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~--------~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||.+|+.++...+ +. . ....++.++++.+++..+..++++++|||||||||+|||||+.+|++||||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5788887753211 10 1 11234678899999952467899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 127 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~ 127 (146)
|+|||+.++..+.+.|+++++ .|.|||++|||++++..+||++++|++|+++..++.
T Consensus 437 t~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 437 TRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999975 599999999999999999999999999999988766
No 207
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-30 Score=197.58 Aligned_cols=130 Identities=21% Similarity=0.326 Sum_probs=110.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.++....+... ....+..+++.+++. ++.++++.+|||||+||++||||++.+|++|||||||+|||+.++
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~ 179 (264)
T PRK13546 101 TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA 179 (264)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence 57788876533222211 123355678888885 578889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..+.+.|.++++ .|.|+|++||+++++..+||++++|++|+++..|+++++..
T Consensus 180 ~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 180 QKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999864 59999999999999999999999999999999999877644
No 208
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.4e-30 Score=195.15 Aligned_cols=140 Identities=38% Similarity=0.518 Sum_probs=110.7
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+... ..+.+..+++.+++. .+..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 101 t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 180 (252)
T PRK14272 101 SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180 (252)
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 57888876532222111 123345556666652 134678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|++++ + ++|+|++||+++++..+||++++|++|++++.|+++++.. +..+....|+
T Consensus 181 ~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14272 181 PASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDERTEAYV 247 (252)
T ss_pred HHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 999999999999985 3 7999999999999999999999999999999999888643 3344545554
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1.7e-30 Score=213.65 Aligned_cols=129 Identities=28% Similarity=0.489 Sum_probs=109.1
Q ss_pred ChHHHhhcCcccc--C--CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR--G--KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++.... . .. ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 6788988764321 1 11 1134577889999996322367799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.++..+.+.|+++++ .|.|||+||||++++..+||+|++|++|+++..++++++
T Consensus 174 ~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 174 EKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999975 599999999999999999999999999999998887654
No 210
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.9e-30 Score=196.23 Aligned_cols=130 Identities=42% Similarity=0.603 Sum_probs=109.7
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+.. ...+++.++++.+++.. ...++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus 121 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD 200 (272)
T PRK14236 121 SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200 (272)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 6788997754322211 11244677888888842 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..+.+.|.++++ +.|+|++||+++++.++||++++|++|+++..|+++++..
T Consensus 201 ~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 201 PISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999963 6899999999999999999999999999999999887643
No 211
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-30 Score=197.78 Aligned_cols=140 Identities=36% Similarity=0.605 Sum_probs=112.7
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.||+.++....+.. ...+++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 135 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~ 214 (285)
T PRK14254 135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPV 214 (285)
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 5788887654322211 12345778889988741 3568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE-EEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC-LLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.+.|+++++ +.|||++||+++++..+|||++ +|++|++++.|+++++.. ..+.....|+
T Consensus 215 ~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 280 (285)
T PRK14254 215 ATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQRVEDYI 280 (285)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHHHHHHh
Confidence 99999999999974 4799999999999999999975 679999999998887643 3334444444
No 212
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=2.4e-30 Score=213.49 Aligned_cols=111 Identities=21% Similarity=0.415 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+.+.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +|.|||++
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIiv 459 (510)
T PRK15439 381 AVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFI 459 (510)
T ss_pred HHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEE
Confidence 35778899999952357899999999999999999999999999999999999999999999999999976 49999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
|||++++.++||++++|++|+++..|+++++.
T Consensus 460 sHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 460 SSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred CCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999887764
No 213
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=195.32 Aligned_cols=140 Identities=32% Similarity=0.500 Sum_probs=113.6
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+. . ...+.+.++++.+++. .+..++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 103 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 182 (259)
T PRK14260 103 SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 (259)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 678898775432221 1 1123466788888873 135678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-----CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-----NGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-----~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|.++++ ++|||++||+++++..+||++++|+ +|++++.|+++++.. +..+....|+
T Consensus 183 ~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 254 (259)
T PRK14260 183 PIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYV 254 (259)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcCCCChHHHHhh
Confidence 9999999999999863 6899999999999999999999998 599999999988743 3344444544
No 214
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.3e-30 Score=196.03 Aligned_cols=140 Identities=37% Similarity=0.566 Sum_probs=111.3
Q ss_pred ChHHHhhcCccccCCCc---cHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++........ ....+.++++.+++. .+..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 120 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD 199 (271)
T PRK14238 120 SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199 (271)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 57889887543222111 122345566666431 235678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.+.|.++.+ +.|||++||+++++.++||++++|++|+++..|+++++.. +.++....|+
T Consensus 200 ~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 266 (271)
T PRK14238 200 PISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTEDYI 266 (271)
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCCHHHHHHH
Confidence 9999999999999863 7999999999999999999999999999999999888743 3344445454
No 215
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-30 Score=195.53 Aligned_cols=139 Identities=33% Similarity=0.508 Sum_probs=113.5
Q ss_pred ChHHHhhcCccccCC-C--ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+. . ....++.++++.+++.. ...++++.+|||||+||++||||++.+|+++||||||+|||
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD 195 (267)
T PRK14237 116 SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195 (267)
T ss_pred cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 678999876432221 1 12345677888888742 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 141 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 141 (146)
+.++..+.++|.++. + +.|||++||+++++.++||++++|++|++++.|+++++.. +.......+
T Consensus 196 ~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 261 (267)
T PRK14237 196 PISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDY 261 (267)
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHh
Confidence 999999999999985 3 7899999999999999999999999999999999988743 333333434
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-30 Score=196.29 Aligned_cols=140 Identities=35% Similarity=0.565 Sum_probs=112.2
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.+|+.++....+.. ...+.+..+++.+++. .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 116 tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~ 195 (274)
T PRK14265 116 SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPI 195 (274)
T ss_pred cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 5778887754322111 1223456677777763 13567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE---------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.+.|.+++ + +.|||++||+++++.++||++++|+ +|++++.|+++++.. +.+.....|+
T Consensus 196 ~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~ 269 (274)
T PRK14265 196 STRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYI 269 (274)
T ss_pred HHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCCCCHHHHHHh
Confidence 9999999999996 3 6899999999999999999999998 899999999988753 3444444444
No 217
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=188.51 Aligned_cols=127 Identities=35% Similarity=0.553 Sum_probs=113.9
Q ss_pred ChHHHhhcCccccCCCcc--HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKLT--ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|++|++...+.... .+.+...+..+||. +..++++.+|||||||||.|||||+.+|++|+||||+++||.-++
T Consensus 90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tR 168 (259)
T COG4525 90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168 (259)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHH
Confidence 578999999988775432 34577889999996 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC--CEEEEeeCcc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPD 128 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~ 128 (146)
+++.+++.++.++.|+.+++|||+++++.-+++|+++|+. |+|++.-+++
T Consensus 169 e~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999888899999999999999999999999984 6898876664
No 218
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=3.1e-30 Score=192.79 Aligned_cols=126 Identities=31% Similarity=0.410 Sum_probs=104.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.+....+......+++.++++.+++.....++++.+|||||+|||+|||||+.+|+++||||||+|||+.++..
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175 (225)
T ss_pred cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 57888877543322222234577899999995346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEEEEeeCc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVEVLKP 127 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i~~~g~~ 127 (146)
+.+.|.++.++.|.|||++||+++++. .||++++|+ ++..+++|+.
T Consensus 176 l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 176 VNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred HHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhh
Confidence 999999997656899999999999985 699999995 4555566553
No 219
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=3.5e-30 Score=215.32 Aligned_cols=127 Identities=33% Similarity=0.443 Sum_probs=105.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++. ...+++++.++++..++.+ ......+..||||||||++||||++++|++|||||||
T Consensus 438 TI~eNI~~g~----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T 513 (588)
T PRK11174 438 TLRDNVLLGN----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513 (588)
T ss_pred CHHHHhhcCC----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 7899999873 1234566777777666532 1223345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 514 SaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 514 ASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred cCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhcc
Confidence 9999999999999999885 38999999999988765 9999999999999999999886543
No 220
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=193.86 Aligned_cols=140 Identities=37% Similarity=0.575 Sum_probs=113.6
Q ss_pred ChHHHhhcCccccCCC-ccHHHHHHHHHHcCCChh---hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGPQLRGKK-LTENEVYKLLSLADLDSS---FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
|+.||+.++....... ...+++.++++.+++... ..++++.+|||||+||++|||||+.+|++|||||||+|||+.
T Consensus 104 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~ 183 (261)
T PRK14263 104 SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPI 183 (261)
T ss_pred cHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 6788998764332211 123467788999888421 345678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE--------CCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--------NGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~--------~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.+.|++++ + +.|+|++||+++++.++|||+++|+ +|++++.|+++++.. +.+++...|+
T Consensus 184 ~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 256 (261)
T PRK14263 184 ATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSDYI 256 (261)
T ss_pred HHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence 9999999999985 3 7899999999999999999999996 899999999988753 2334444443
No 221
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.9e-30 Score=195.76 Aligned_cols=140 Identities=36% Similarity=0.498 Sum_probs=112.6
Q ss_pred ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+++|+.++...... .. ....+.++++.+++.. +..++.+.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD 195 (276)
T PRK14271 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195 (276)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 578888875422211 11 1223566788888852 23577889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.+++.+.+.|.++++ +.|||++||+++++.++|||+++|++|++++.|+++++.. +.++....|+
T Consensus 196 ~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 262 (276)
T PRK14271 196 PTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYV 262 (276)
T ss_pred HHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 9999999999999864 5899999999999999999999999999999999988753 3344444443
No 222
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=4.3e-30 Score=211.34 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=108.7
Q ss_pred ChHHHhhcCcc--cc---CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQ--LR---GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~--~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.+|+.++.. .. ... ...+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~L 434 (500)
T TIGR02633 355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434 (500)
T ss_pred CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence 57788877531 11 111 113457789999999533568899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|+.++..+.+.|.++++ +|.|||++|||++++.++||++++|++|+++..++.+++
T Consensus 435 D~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 435 DVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred CHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999976 499999999999999999999999999999988766544
No 223
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=6.4e-30 Score=191.02 Aligned_cols=123 Identities=32% Similarity=0.414 Sum_probs=103.0
Q ss_pred ChHHHhhcCccccCC---Cc--cHHHHHH-HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK---KL--TENEVYK-LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~---~~--~~~~~~~-~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++...... .. ....+.. .++.+++. ++.++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD 175 (226)
T cd03234 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175 (226)
T ss_pred cHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCC
Confidence 678999875432211 11 1123444 78888885 56788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCEEEEee
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+.++..+.+.+.++++ .|.|+|++||++ +++.++||++++|++|++++.|
T Consensus 176 ~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 176 SFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999875 489999999998 6899999999999999998754
No 224
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-30 Score=208.61 Aligned_cols=129 Identities=37% Similarity=0.497 Sum_probs=110.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK----------TGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ..+++++.++++..++.+ +.+. .+..|||||+|||++||||+++++++|+||||
T Consensus 410 TireNi~l~~~----~~s~e~i~~al~~a~l~~-~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT 484 (559)
T COG4988 410 TIRENILLARP----DASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT 484 (559)
T ss_pred cHHHHhhccCC----cCCHHHHHHHHHHhcHHH-hhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 68999988732 245677888888887742 3332 34569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
++||.++.+.+.+.|.++++ ++|+|++||++..+.. +|+|++|++|++++.|+++++......+
T Consensus 485 A~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 485 AHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred cCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 99999999999999999975 6999999999998876 8999999999999999999986654433
No 225
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=192.05 Aligned_cols=140 Identities=37% Similarity=0.604 Sum_probs=113.7
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.||+.++....+.. ..++++..+++.+++. .+..++++.+|||||+||++|||||+.+|+++||||||+|||
T Consensus 114 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD 193 (265)
T PRK14252 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193 (265)
T ss_pred hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 5788887764322211 1134566777877763 135678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 142 (146)
+.++..+.+.|.++++ +.|||++||+++++.++||++++|++|++++.|+.+++. .+.+++.+.|+
T Consensus 194 ~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 260 (265)
T PRK14252 194 PIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTEDYI 260 (265)
T ss_pred HHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 9999999999999863 689999999999999999999999999999999988874 33455555554
No 226
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=190.44 Aligned_cols=140 Identities=40% Similarity=0.609 Sum_probs=113.9
Q ss_pred ChHHHhhcCccccCCC---ccHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+.. ..++++.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 99 t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD 178 (250)
T PRK14266 99 SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 (250)
T ss_pred hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 5788887654322211 12345677888888742 34678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+.++..+.++|.+++ + +.|||++||+++++..+||++++|++|++++.|+++++.. +..+....|+
T Consensus 179 ~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14266 179 PISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKRTEDYI 245 (250)
T ss_pred HHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCChHHHHHh
Confidence 999999999999985 3 7899999999999999999999999999999999988743 3344444454
No 227
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=1.4e-29 Score=194.61 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=106.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCC-----------CChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAE-----------ISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
|+++|+.... ....+++.++++.+|+. .+.++++.. ||||||||++||||++.+|+++|||||
T Consensus 92 tv~~nl~~~~-----~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEp 165 (275)
T cd03289 92 TFRKNLDPYG-----KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 165 (275)
T ss_pred hHHHHhhhcc-----CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 5678875321 12345677888999995 567777766 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 166 ts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 166 SAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred cccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999874 38999999999998875 99999999999999999998765
No 228
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.2e-30 Score=186.51 Aligned_cols=130 Identities=28% Similarity=0.377 Sum_probs=112.7
Q ss_pred ChHHHhhcCccccCC--C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc------CCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGK--K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN------EPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt 70 (146)
||+|.+.+|...++. . .+..-+..++...++. .+..+.+.+|||||||||.+||+|++ ++++|+|||||
T Consensus 91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt 169 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT 169 (259)
T ss_pred EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc
Confidence 578888888654432 1 1122267889999995 68999999999999999999999975 55699999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+||+..+...+++.++++++ |..|+.|-||++.+..|||||++|++||+++.|+|++...
T Consensus 170 saLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 170 SALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 999999999999999999975 8999999999999999999999999999999999988654
No 229
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=5.2e-30 Score=216.99 Aligned_cols=126 Identities=36% Similarity=0.539 Sum_probs=106.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ....+++.+++...|..+.. ....+..||||||||++|||||+++|++|||||||
T Consensus 562 SI~eNi~l~~p----~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 562 SIRENIALGNP----EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 68899988742 22345677777666653222 23456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||+.+.+.+.+.|.++.. |+|+|+|||+++.+. .||||++|++|+|+++|+.+++...
T Consensus 638 SaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 638 SALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred cccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999864 899999999999885 5999999999999999999998654
No 230
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-29 Score=191.22 Aligned_cols=139 Identities=36% Similarity=0.532 Sum_probs=114.5
Q ss_pred ChHHHhhcCccccCC-Cc--cHHHHHHHHHHcCCCh---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|+.+|+.++....+. .. ....+.++++.+++.. +..++++..||+|||||++|||||+.+|+++||||||+|||
T Consensus 106 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD 185 (257)
T PRK14246 106 SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185 (257)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 578888876432221 11 1234677889999852 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHH
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 141 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 141 (146)
+.++..+.+.|.+++ + +.|||++||+++++..+||++++|++|++++.|+++++.. +.+++.+.|
T Consensus 186 ~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 186 IVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 999999999999985 3 6999999999999999999999999999999999888753 344565555
No 231
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=208.54 Aligned_cols=125 Identities=29% Similarity=0.416 Sum_probs=107.3
Q ss_pred ChHHHhhcCccc--cC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQL--RG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~--~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||.+|+.++... .+ .. ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCH
Confidence 678999876421 11 11 1234677899999996 467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 127 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~ 127 (146)
.++..+.+.|.++++ .|.|||++|||++++..+||++++|++|+++..++.
T Consensus 174 ~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 174 REIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999975 599999999999999999999999999999876654
No 232
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.4e-30 Score=221.11 Aligned_cols=126 Identities=37% Similarity=0.567 Sum_probs=104.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.||.. ...++++.++++..+..+ ........+||||||||+||||||+.+|++|||||||
T Consensus 442 tI~eNI~~G~~----dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaT 517 (1228)
T KOG0055|consen 442 TIRENIRYGKP----DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEAT 517 (1228)
T ss_pred cHHHHHhcCCC----cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcc
Confidence 68999999842 234555655555443311 1233445689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||+.+.+.+.+.|.+.. .|+|.|+|+|++..+.+ +|+|++|++|+|++.|+++|+...
T Consensus 518 SaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 518 SALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred cccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999975 39999999999999987 999999999999999999998654
No 233
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=2.3e-29 Score=182.28 Aligned_cols=99 Identities=43% Similarity=0.595 Sum_probs=91.8
Q ss_pred HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 25 LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 25 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+++.+++. ++.++++.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.+++++.|.|+|++||+++
T Consensus 81 ~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 81 ALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67888996 56788899999999999999999999999999999999999999999999999997544899999999999
Q ss_pred HHHhhcCeEEEEECCEEEEe
Q 046954 105 QIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 105 ~~~~~~d~v~~l~~G~i~~~ 124 (146)
++.++||++++|++|+++..
T Consensus 160 ~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 160 LAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHhCCEEEEEECCEEEec
Confidence 99999999999999998764
No 234
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=3.6e-29 Score=188.02 Aligned_cols=96 Identities=34% Similarity=0.521 Sum_probs=88.7
Q ss_pred hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++ + |+|||++||+++++. .||+++
T Consensus 131 ~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~ 207 (237)
T cd03252 131 IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRII 207 (237)
T ss_pred hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEE
Confidence 4567889999999999999999999999999999999999999999999999985 4 899999999999985 699999
Q ss_pred EEECCEEEEeeCccccccC
Q 046954 115 LLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 115 ~l~~G~i~~~g~~~~~~~~ 133 (146)
+|++|+++..|+++++...
T Consensus 208 ~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 208 VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred EEECCEEEEEcCHHHHHhc
Confidence 9999999999998877543
No 235
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-29 Score=192.76 Aligned_cols=109 Identities=27% Similarity=0.423 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++++ .|+|||++
T Consensus 121 ~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviiv 198 (272)
T PRK15056 121 QIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVS 198 (272)
T ss_pred HHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 4567788999996 578899999999999999999999999999999999999999999999999999975 48999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
||+++++.++||+++++ +|+++..|+++++.
T Consensus 199 sH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 199 THNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred eCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999877 89999999988764
No 236
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.9e-29 Score=190.15 Aligned_cols=118 Identities=24% Similarity=0.277 Sum_probs=99.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.||+.+...... .......++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||++||+.++..
T Consensus 77 tv~e~l~~~~~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~ 153 (246)
T cd03237 77 TVRDLLSSITKDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM 153 (246)
T ss_pred CHHHHHHHHhhhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 57777765422111 1123456788899995 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
+.+.|++++++.|+|||+|||+++++..+||++++|+++..
T Consensus 154 l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 154 ASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 99999999766689999999999999999999999976543
No 237
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=2.9e-29 Score=190.09 Aligned_cols=109 Identities=27% Similarity=0.394 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.++.++++.+++.....++++. +|||||+|||+|||||+.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||+
T Consensus 128 ~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~ 206 (252)
T CHL00131 128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIIL 206 (252)
T ss_pred HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 3467789999996345677887 5999999999999999999999999999999999999999999999875 4899999
Q ss_pred EecCHHHHHhh-cCeEEEEECCEEEEeeCccc
Q 046954 99 VSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDL 129 (146)
Q Consensus 99 itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 129 (146)
+||+++++..+ ||++++|++|++++.|+++.
T Consensus 207 ~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 207 ITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred EecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 99999999887 89999999999999998874
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.6e-29 Score=194.86 Aligned_cols=111 Identities=42% Similarity=0.604 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCC---hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 20 NEVYKLLSLADLD---SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 20 ~~~~~~l~~~~l~---~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
+.+..+++.+++. ....++++.+|||||+|||+|||||+++|++|||||||+|||+.++..+.++|+++++ +.||
T Consensus 175 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~ti 252 (305)
T PRK14264 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTV 252 (305)
T ss_pred HHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEE
Confidence 4567788888874 1356788999999999999999999999999999999999999999999999999975 4899
Q ss_pred EEEecCHHHHHhhcCeE-EEEECCEEEEeeCcccccc
Q 046954 97 VMVSHSIKQIQRIADVV-CLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~~ 132 (146)
|++||+++.+..+||++ ++|++|++++.|+++++..
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence 99999999999999996 5789999999999887753
No 239
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=2.8e-29 Score=186.64 Aligned_cols=116 Identities=35% Similarity=0.551 Sum_probs=97.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCc-----------CCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTG-----------AEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
|+.||+.++... .....+.++++.+++. ++.++.+ .+||||||||++||||++.+|+++|||||
T Consensus 93 tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEP 167 (220)
T cd03245 93 TLRDNITLGAPL----ADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167 (220)
T ss_pred hHHHHhhcCCCC----CCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 567887765321 1234566778888885 4555543 69999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~ 124 (146)
|+|||+.++..+.+.|.++++ +.|||++||+++.+ ++||++++|++|++++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 168 TSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred cccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 999999999999999999864 48999999999986 79999999999999764
No 240
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.96 E-value=2.3e-29 Score=187.32 Aligned_cols=119 Identities=30% Similarity=0.490 Sum_probs=101.7
Q ss_pred ChHHHhhcCccccC-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
|+.+|+.++..... .. ...+++.++++.+++. +..++++.+||+|||||++|||||+.+|+++||||||+|||+.+
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 57788877543321 11 1234578899999995 57888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
+..+.+.|+++.++.|+|+|++||+++. .++||+|++|++|++
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 177 GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 9999999999976568999999999985 579999999999986
No 241
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=5e-29 Score=188.24 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 21 EVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.+.++++.+++..++.++++. +|||||||||+||||++.+|++|||||||++||+.++..+.+.|+++++ .|+|||++
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~ 201 (248)
T PRK09580 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIV 201 (248)
T ss_pred HHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 456778888885445677775 7999999999999999999999999999999999999999999999875 48999999
Q ss_pred ecCHHHHHhh-cCeEEEEECCEEEEeeCcccc
Q 046954 100 SHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 130 (146)
||+++.+..+ +|++++|++|+++..|+++.+
T Consensus 202 sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 202 THYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred eCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999887 899999999999999887643
No 242
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=189.53 Aligned_cols=128 Identities=34% Similarity=0.512 Sum_probs=101.6
Q ss_pred ChHHHhhcCccccCCCccHH-----HHHHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKLTEN-----EVYKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|++||+.++........... .+.++++.+ ++. ...++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 91 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L 169 (234)
T cd03251 91 TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169 (234)
T ss_pred cHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 67888887643211000000 122344444 453 3467788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+.++..+.+.|.++. + +.|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 170 D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 170 DTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999985 3 8999999999999976 99999999999999988877643
No 243
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=3.6e-29 Score=190.05 Aligned_cols=111 Identities=28% Similarity=0.436 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++..+++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||+
T Consensus 98 ~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 98 KEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176 (251)
T ss_pred HHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35577889999995 57889999999999999999999999999999999999999999999999999987655899999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+||+++++.++||++++|+ |+++..|+++++.
T Consensus 177 vsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 177 VSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred EecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999996 4788999887764
No 244
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-29 Score=203.04 Aligned_cols=126 Identities=33% Similarity=0.558 Sum_probs=108.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++|+.++. ...+++++.++++.+||.+- +.+..+..|||||+||++|||+|++|.+++||||||
T Consensus 427 Tlr~NL~lA~----~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT 502 (573)
T COG4987 427 TLRDNLRLAN----PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPT 502 (573)
T ss_pred HHHHHHhhcC----CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCc
Confidence 6788887763 23457788889999888532 233446789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
.|||+.+.+++++.+.+..+ |+|+|+|||++..++. ||||++|++|+++++|+..++..+
T Consensus 503 egLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 503 EGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred ccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhcc
Confidence 99999999999999999764 9999999999998865 899999999999999999988654
No 245
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=2.6e-29 Score=229.23 Aligned_cols=128 Identities=22% Similarity=0.361 Sum_probs=114.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|++||+.+....++.+. .++.+.++++.+++. ++.++++++||||||||++||+||+.+|+++||||||+|||+.++
T Consensus 2028 Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257 2028 TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 68899987655544322 134567889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.+++.|.+++++ |+|||++||++++++.+||||++|++|+++..|+++++
T Consensus 2107 ~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2107 RMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999764 99999999999999999999999999999999998776
No 246
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=6.1e-29 Score=207.21 Aligned_cols=127 Identities=38% Similarity=0.536 Sum_probs=105.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||++||.++... .+++++.++++..++.+ ......+..||||||||++||||++.+|++++|||||
T Consensus 418 TI~~NI~~g~~~----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT 493 (567)
T COG1132 418 TIRENIALGRPD----ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT 493 (567)
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 789999988432 24456666665554321 1233345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+...+.+.+.++.+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 494 SalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~~ 554 (567)
T COG1132 494 SALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAKG 554 (567)
T ss_pred cccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHcC
Confidence 99999999999999998763 7899999999999987 9999999999999999999986653
No 247
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=4.3e-29 Score=187.67 Aligned_cols=95 Identities=38% Similarity=0.605 Sum_probs=87.7
Q ss_pred hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++ .|+|||++||+++++. +||+++
T Consensus 132 ~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~ 208 (238)
T cd03249 132 LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIA 208 (238)
T ss_pred eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEE
Confidence 3566789999999999999999999999999999999999999999999999985 4899999999999997 899999
Q ss_pred EEECCEEEEeeCcccccc
Q 046954 115 LLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 115 ~l~~G~i~~~g~~~~~~~ 132 (146)
+|++|++++.++.+++..
T Consensus 209 ~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 209 VLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EEECCEEEEeCCHHHHhh
Confidence 999999999988877644
No 248
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.7e-29 Score=204.87 Aligned_cols=110 Identities=22% Similarity=0.371 Sum_probs=99.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+.+..+++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+++.|.++++ +|.|||++
T Consensus 369 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~v 447 (491)
T PRK10982 369 SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIII 447 (491)
T ss_pred HHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEE
Confidence 45677889988853356899999999999999999999999999999999999999999999999999975 59999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|||++++..+|||+++|++|+++..+++..+
T Consensus 448 sHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 448 SSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred CCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999987776543
No 249
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-29 Score=207.96 Aligned_cols=130 Identities=32% Similarity=0.543 Sum_probs=107.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCC-------Ch---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADL-------DS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+|||.||.. ...++++..+.+..+- ++ .....++.+||||||||+||||||+++|.+|||||.|
T Consensus 557 sI~eNI~YG~~----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT 632 (716)
T KOG0058|consen 557 SIRENIAYGLD----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT 632 (716)
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence 68999999975 2344555555544432 11 1234567799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
|+||.++...+.+.|.++.+ ++|||+|.|.++.+++ ||+|+++++|++++.|+.+++.......
T Consensus 633 SALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~gl 696 (716)
T KOG0058|consen 633 SALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPNGL 696 (716)
T ss_pred hhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCcccH
Confidence 99999999999999999864 7999999999999976 9999999999999999999987654333
No 250
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=8.2e-29 Score=207.26 Aligned_cols=129 Identities=32% Similarity=0.485 Sum_probs=107.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++||.++. ..+++++.++++.+|+.+. .....+..||||||||++|||||+.+|+++||||||
T Consensus 430 Ti~~NI~~~~-----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpt 504 (592)
T PRK10790 430 TFLANVTLGR-----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEAT 504 (592)
T ss_pred hHHHHHHhCC-----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 6889998863 2345677788888776421 112335679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++......+
T Consensus 505 s~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~~~~y 568 (592)
T PRK10790 505 ANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAAQGRY 568 (592)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhCCCHH
Confidence 99999999999999999853 799999999998776 49999999999999999999886544433
No 251
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=1.1e-28 Score=206.14 Aligned_cols=126 Identities=27% Similarity=0.519 Sum_probs=108.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK----------TGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...++++.++++.+++. ++.++ .+..||||||||++||||++++|+++||||||
T Consensus 429 ti~~Ni~~~~~----~~~~~~i~~al~~~~l~-~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t 503 (574)
T PRK11160 429 TLRDNLLLAAP----NASDEALIEVLQQVGLE-KLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503 (574)
T ss_pred cHHHHhhcCCC----ccCHHHHHHHHHHcCCH-HHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 68899988632 23566788889998885 34333 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
++||+.+.+.+.+.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 504 s~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 504 EGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 9999999999999999985 38999999999998865 9999999999999999999886543
No 252
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=205.89 Aligned_cols=131 Identities=31% Similarity=0.435 Sum_probs=106.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...+++++.++++.+++.+. ........||||||||++|||||+++|+++||||||
T Consensus 432 Ti~~Ni~~~~~---~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 432 TIANNIAYART---EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred hHHHHHhcCCC---CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 68999988631 11345677777777775321 112234679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++......+
T Consensus 509 saLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 509 SALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 99999999999999999753 799999999998765 59999999999999999999886544333
No 253
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=1.1e-28 Score=209.66 Aligned_cols=124 Identities=32% Similarity=0.497 Sum_probs=104.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. .+++++.++++..++.+.. ....+..||||||||++||||++++|+++||||||
T Consensus 542 TI~eNi~~~~~-----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpT 616 (686)
T TIGR03797 542 SIFENIAGGAP-----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616 (686)
T ss_pred cHHHHHhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 78999988632 3466788888888874321 11234679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+.+.+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 617 S~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 617 SALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred cCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999998775 5799999999988865 9999999999999999999886543
No 254
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.9e-29 Score=186.27 Aligned_cols=95 Identities=37% Similarity=0.569 Sum_probs=87.3
Q ss_pred hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++ + |.|||++||+++.+.. ||+++
T Consensus 130 ~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~ 206 (236)
T cd03253 130 IVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKII 206 (236)
T ss_pred hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEE
Confidence 3456678999999999999999999999999999999999999999999999986 4 8999999999999965 99999
Q ss_pred EEECCEEEEeeCcccccc
Q 046954 115 LLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 115 ~l~~G~i~~~g~~~~~~~ 132 (146)
+|++|+++..|+.+++..
T Consensus 207 ~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 207 VLKDGRIVERGTHEELLA 224 (236)
T ss_pred EEECCEEEeeCCHHHHhh
Confidence 999999999988877654
No 255
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-28 Score=184.07 Aligned_cols=93 Identities=35% Similarity=0.571 Sum_probs=85.0
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
.++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+++ + |.|||++||+++++. .||++++
T Consensus 133 ~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~ 209 (229)
T cd03254 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILV 209 (229)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEE
Confidence 456678999999999999999999999999999999999999999999999985 3 899999999999986 5999999
Q ss_pred EECCEEEEeeCccccc
Q 046954 116 LVNGEIVEVLKPDLLS 131 (146)
Q Consensus 116 l~~G~i~~~g~~~~~~ 131 (146)
|++|+++..++.+++.
T Consensus 210 l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 210 LDDGKIIEEGTHDELL 225 (229)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999888776553
No 256
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.96 E-value=1.2e-28 Score=209.91 Aligned_cols=124 Identities=32% Similarity=0.493 Sum_probs=103.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++. ...+++++.++++..++.+. .....+..||||||||++||||++++|+++||||||
T Consensus 568 Ti~eNi~l~~----~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt 643 (710)
T TIGR03796 568 TVRDNLTLWD----PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT 643 (710)
T ss_pred cHHHHhhCCC----CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence 7899998752 12345667777777766421 122345789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 644 S~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 644 SALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred ccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999875 38999999999998865 999999999999999999988654
No 257
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=6.6e-29 Score=226.62 Aligned_cols=127 Identities=28% Similarity=0.484 Sum_probs=113.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++...++.. ..++++.++++.+|+. +..++++++|||||||||+||+||+.+|+++||||||+|||+.++
T Consensus 1019 TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr 1097 (2272)
T TIGR01257 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 7899999876554432 1235678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++..+
T Consensus 1098 ~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1098 RSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999984 3 99999999999999999999999999999999998765
No 258
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.2e-28 Score=206.10 Aligned_cols=122 Identities=26% Similarity=0.363 Sum_probs=105.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.+|+.++..... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 416 tv~e~l~~~~~~~~---~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~ 491 (590)
T PRK13409 416 TVEDLLRSITDDLG---SSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491 (590)
T ss_pred cHHHHHHHHhhhcC---hHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 67888876532111 223467889999996 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 127 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~ 127 (146)
+.+.|++++++.|.|+|+||||++++..+|||+++|+ |++...|+.
T Consensus 492 l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 492 VAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999987668999999999999999999999995 577776663
No 259
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=5.4e-29 Score=216.40 Aligned_cols=128 Identities=36% Similarity=0.585 Sum_probs=107.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCC-------Ch---hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADL-------DS---SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.||.. . ...+++.++++..+. +. .....++.+||||||||+|||||+++||++|||||.|
T Consensus 1079 TIrENI~YG~~---~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEAT 1154 (1228)
T KOG0055|consen 1079 TIRENIAYGSE---E-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEAT 1154 (1228)
T ss_pred cHHHHHhccCC---C-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccc
Confidence 78999999821 1 345667666665543 21 2234557799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 135 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 135 (146)
|+||.++.+.+.+.|.+.. .|+|+|+|.|.+..+.. ||.|+|+++|+|++.|+.+++.+++.
T Consensus 1155 SALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1155 SALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred hhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCC
Confidence 9999999999999999985 39999999999999976 99999999999999999999876433
No 260
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=2.3e-28 Score=183.07 Aligned_cols=101 Identities=32% Similarity=0.433 Sum_probs=91.5
Q ss_pred HHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 23 YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 23 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.++++.+++.....++++.+|||||||||+|||||+.+| +++||||||+|||+.++..+.+.|.++++ .|.|+|++|
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~it 196 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVE 196 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 467888898633478899999999999999999999998 59999999999999999999999999975 599999999
Q ss_pred cCHHHHHhhcCeEEEE------ECCEEEEee
Q 046954 101 HSIKQIQRIADVVCLL------VNGEIVEVL 125 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l------~~G~i~~~g 125 (146)
|+++++ .+||++++| ++|+|+++|
T Consensus 197 H~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 197 HDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999987 589999999 999999875
No 261
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=1.8e-28 Score=182.16 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=103.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.+....++.. ..+....+.+.++++ ...++++.+||+|||||++||||++.+|+++||||||+++|+.+++.
T Consensus 65 tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 65 TGEENARMMASLYGLD-GDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred cHHHHHHHHHHHcCCC-HHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 6789998765443322 122223344567775 46788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+.+.+.+..+ +.++|++||++..+..+||++++|++|++++.++.++.
T Consensus 143 ~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 143 MQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 9998876543 46899999999999999999999999999998887765
No 262
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=198.27 Aligned_cols=128 Identities=30% Similarity=0.446 Sum_probs=111.0
Q ss_pred ChHHHhhcCccccC---C-C--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRG---K-K--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~---~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||.|||.++..... . . ...+++.++++.+++..+ .+.++++||.||||.|+||||+..+++++|||||||+|+
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt 177 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 68999988755432 1 1 123567788999988533 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC-cccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLL 130 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~-~~~~ 130 (146)
......++++++++++ .|.+||+|||.++++.++||||.||++|+.+.+.+ ..++
T Consensus 178 ~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 178 VKETERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 9999999999999975 59999999999999999999999999999998887 3544
No 263
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.96 E-value=2.5e-28 Score=207.64 Aligned_cols=124 Identities=35% Similarity=0.509 Sum_probs=103.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ..+++++.++++..++.+. .....+..||||||||++||||++.+|+++||||||
T Consensus 554 TI~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~T 629 (694)
T TIGR03375 554 TLRDNIALGAP----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT 629 (694)
T ss_pred hHHHHHhCCCC----CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 68999988632 2346677777777766321 122345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
|+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 630 s~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 630 SAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999863 89999999999887 569999999999999999988764
No 264
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=2.9e-28 Score=181.68 Aligned_cols=115 Identities=24% Similarity=0.330 Sum_probs=96.4
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+.....+.. ...+++.++++.+++...+.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 106 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 185 (224)
T TIGR02324 106 SALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5678887643222211 12345778899999964345788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
+.+.+.|+++++ .|+|||++||+++++..+||+++.+
T Consensus 186 ~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 186 QVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999965 4899999999999999999999876
No 265
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.96 E-value=5e-28 Score=201.50 Aligned_cols=128 Identities=34% Similarity=0.501 Sum_probs=105.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
|++||+.++.. ....++++.++++.+++.+ +.+ .....||||||||++||||++.+|+++|||||
T Consensus 421 Ti~~Ni~~~~~---~~~~~~~i~~~l~~~~l~~-~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEp 496 (571)
T TIGR02203 421 TIANNIAYGRT---EQADRAEIERALAAAYAQD-FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA 496 (571)
T ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHcChHH-HHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 68899987631 1234667778888877742 222 22457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 135 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 135 (146)
|++||+.+.+.+.+.|.++.+ ++|+|+|||++..+ ..||+|++|++|++++.|+.+++.....
T Consensus 497 ts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 497 TSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred cccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 999999999999999998753 79999999999765 5699999999999999999988764433
No 266
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=3e-28 Score=179.34 Aligned_cols=113 Identities=34% Similarity=0.493 Sum_probs=95.7
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR 170 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence 5788887754322211 1234678899999995 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
..+.+.|+++.+ .|.|+|++||+++.+ .+||++++|
T Consensus 171 ~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 171 DEVLDLLLELND-EGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999975 489999999999866 589999875
No 267
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=6.1e-28 Score=184.06 Aligned_cols=121 Identities=27% Similarity=0.409 Sum_probs=101.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~---p~llllDEPt~~LD~~~ 77 (146)
|+.|++.|..... ...++.++++.+||.....++++.+|||||+||++||++|+.+ |+++||||||+|||+..
T Consensus 132 tv~e~~~~~~~~~----~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~ 207 (261)
T cd03271 132 TVEEALEFFENIP----KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD 207 (261)
T ss_pred CHHHHHHHHHhhh----hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH
Confidence 4556655543221 1235667889999963247889999999999999999999996 79999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE------ECCEEEEeeCc
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKP 127 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~ 127 (146)
+..+.+.|.++.+ .|.|+|++||+++++. .||+++.| ++|+|++.|++
T Consensus 208 ~~~l~~~L~~l~~-~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 208 VKKLLEVLQRLVD-KGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999975 5999999999999885 69999999 89999999874
No 268
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=4.6e-28 Score=202.68 Aligned_cols=126 Identities=33% Similarity=0.496 Sum_probs=102.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...++++..+++.+++.+ ......+..||||||||++|||||+++|+++||||||
T Consensus 424 Ti~~Ni~~~~~----~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 424 SIEDNIRVGRP----DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 68999988631 123555666666665531 1122345679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||+.+.+.+.+.|.++. .++|+|+|||+++.+ +.||+|++|++|++++.|+.+++...
T Consensus 500 s~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 500 SALDVETEAKVKAALDELM--KGRTTFIIAHRLSTV-RNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred cCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9999999999999999875 389999999999876 56999999999999999998887543
No 269
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=5.2e-28 Score=179.87 Aligned_cols=117 Identities=28% Similarity=0.473 Sum_probs=96.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhh-----------cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------SKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
|+.||+.+... ...+++.++++.+++. +.. ++++.+||+||+||++|||||+.+|+++|||||
T Consensus 93 tv~enl~~~~~-----~~~~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 166 (221)
T cd03244 93 TIRSNLDPFGE-----YSDEELWQALERVGLK-EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA 166 (221)
T ss_pred hHHHHhCcCCC-----CCHHHHHHHHHHhCcH-HHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 56777764321 1234556666766664 233 457899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
|+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++++|++|++++.|+
T Consensus 167 ~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 167 TASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred cccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 999999999999999999853 6899999999999875 99999999999988765
No 270
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=1.9e-28 Score=207.13 Aligned_cols=128 Identities=27% Similarity=0.282 Sum_probs=108.5
Q ss_pred ChHHHhhcCccccCC---Cc--cHHHHHHHHHHcCCChhhh-----cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGK---KL--TENEVYKLLSLADLDSSFL-----SKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.+....+.. .. ..++++++++.+|+. +.. ++.+++|||||||||+||++|+.+|++++|||||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 789999886533211 11 124577889999995 344 3456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++|++++|++|++++.|+++++
T Consensus 235 sgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 235 SGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred CCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHH
Confidence 99999999999999999986 5999999999998 58899999999999999999998765
No 271
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.5e-28 Score=179.16 Aligned_cols=113 Identities=25% Similarity=0.376 Sum_probs=98.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.++...++. ...+++.++++.+|+. ++.++++.+||||||||++||||++++|+++||||||++||+.++..
T Consensus 90 tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 167 (204)
T PRK13538 90 TALENLRFYQRLHGP-GDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR 167 (204)
T ss_pred cHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 578888776433221 2345678899999995 57789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
+.++|+++++ .|.|+|++||+++++..+.+|++++
T Consensus 168 l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 168 LEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 9999999875 4899999999999999888888877
No 272
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=4.4e-28 Score=179.90 Aligned_cols=115 Identities=20% Similarity=0.277 Sum_probs=98.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.++...++. ...+.+..+++.+++. +..++++.+||||||||++||||++.+|+++||||||++||+.+++.
T Consensus 98 t~~e~l~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (214)
T PRK13543 98 STLENLHFLCGLHGR-RAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175 (214)
T ss_pred cHHHHHHHHHHhcCC-cHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 567887665332221 1234567889999996 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
+.+.|.++++ .|.|+|++||+++++.++||++++++.
T Consensus 176 l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 176 VNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999875 489999999999999999999999864
No 273
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.96 E-value=2.3e-28 Score=205.59 Aligned_cols=128 Identities=27% Similarity=0.409 Sum_probs=110.7
Q ss_pred ChHHHhhcCccccCCC-----ccHHHHHHHHHHcCCChhhhcCCcC------CCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLSKTGA------EISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.|++..+... ...+++.++++.+|+. +..|..++ .|||||||||+||++|+.+|++++||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 7999999876543211 1234578899999995 46677665 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 999999999999999999986 4999999999995 78899999999999999999998764
No 274
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=9e-28 Score=204.27 Aligned_cols=130 Identities=28% Similarity=0.407 Sum_probs=105.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ....+++.++++..++.+ ......+.+||||||||++||||++++|+++||||||
T Consensus 546 ti~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 546 SIRDNIALCNP----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred hHHHHHhcCCC----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 68899987531 223556666666665532 1223446789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++......+
T Consensus 622 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~~~~y 685 (694)
T TIGR01846 622 SALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLALQGLY 685 (694)
T ss_pred cCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHcCChH
Confidence 9999999999999999985 38999999999998865 9999999999999999999886543333
No 275
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=5.8e-28 Score=217.60 Aligned_cols=138 Identities=33% Similarity=0.523 Sum_probs=109.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++.. ...++++.++++..++.+. .....+..||||||||++|||||+++|++|||||||
T Consensus 1311 TIreNI~~g~~----~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaT 1386 (1466)
T PTZ00265 1311 SIYENIKFGKE----DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386 (1466)
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 78999999742 2345677888877766321 122345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC----CEEE-EeeCccccccCCCHHHHHHhh
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN----GEIV-EVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~~~~~~~~~~~~ 143 (146)
|+||+.+.+.+.+.|.++.+..++|+|+|||+++.+.. ||+|++|++ |+++ +.|+.+++.......+..+..
T Consensus 1387 SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 99999999999999999852248999999999998865 999999999 9955 899999986532333344443
No 276
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=6e-28 Score=205.85 Aligned_cols=124 Identities=31% Similarity=0.493 Sum_probs=100.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++.. ...++++.++++..++.+. .....+.+||||||||++||||++++|+++||||||
T Consensus 570 TIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT 645 (711)
T TIGR00958 570 SVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645 (711)
T ss_pred CHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence 78999988742 1235667777777776321 122335689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||+.+.+.+.+ .. . ..++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.+.
T Consensus 646 SaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 646 SALDAECEQLLQE-SR-S--RASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred cccCHHHHHHHHH-hh-c--cCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence 9999999999988 22 2 24899999999999875 4999999999999999999987654
No 277
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=3.8e-28 Score=181.28 Aligned_cols=117 Identities=35% Similarity=0.526 Sum_probs=95.0
Q ss_pred ChHHHhhcCccccCCCc-cH----HHHHHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKL-TE----NEVYKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~-~~----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
|+.+|+.++........ .. ..+.++++.+ |+. ...+.++.+|||||||||+|||||+.+|+++||||||+||
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 181 (226)
T cd03248 103 SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSAL 181 (226)
T ss_pred hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 57888877543211100 00 1134667777 675 4578889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
|+.++..+.+.|+++++ +.|+|++||+++++. .||++++|++|++
T Consensus 182 D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 182 DAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999863 689999999999996 4999999999974
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.5e-28 Score=200.15 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=104.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.+.. ......+++..+++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 400 t~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 476 (530)
T PRK15064 400 TLFDWMSQWR---QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIES 476 (530)
T ss_pred cHHHHHHHhc---cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 4566665321 1112345678899999985346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE-EeeCccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLS 131 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 131 (146)
+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 477 l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 477 LNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99998875 359999999999999999999999999997 777776653
No 279
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=6.9e-28 Score=205.33 Aligned_cols=126 Identities=33% Similarity=0.558 Sum_probs=103.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...+++++.++++..++.+. .....+..||||||||++||||++++|++|||||||
T Consensus 563 TI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T 639 (708)
T TIGR01193 563 SILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST 639 (708)
T ss_pred HHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 68999998631 12345667777777666321 122345789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
++||+.+.+.+.+.|.++ .|+|+|+|||+++.+ +.||+|++|++|++++.|+.+++...
T Consensus 640 s~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 640 SNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred ccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHH-HcCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999875 279999999999877 46999999999999999999887654
No 280
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=9.3e-28 Score=200.29 Aligned_cols=126 Identities=29% Similarity=0.434 Sum_probs=103.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...++++..+++..++.+. ..+..+..||||||||++||||++++|+++||||||
T Consensus 404 ti~~Ni~~~~~----~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 404 TVANNIALGRP----DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 68899987632 1234556666666665321 223445789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 480 s~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred ccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHc
Confidence 9999999999999999975 3899999999998875 5999999999999999999887543
No 281
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.95 E-value=1.3e-27 Score=200.12 Aligned_cols=127 Identities=28% Similarity=0.469 Sum_probs=102.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCC----------hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++... ..++++.++++..++. +...+..+..||||||||++|||||+.+|+++||||||
T Consensus 424 ti~~Ni~~~~~~----~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt 499 (585)
T TIGR01192 424 SIRENIRLGREG----ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT 499 (585)
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 688999886321 1234444444443331 12344567789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++....
T Consensus 500 s~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 500 SALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred cCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999874 3899999999999885 59999999999999999998875543
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=4.7e-28 Score=198.85 Aligned_cols=107 Identities=22% Similarity=0.372 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+++.++++.+++...+.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|.+++++.+.|||++
T Consensus 379 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458 (490)
T ss_pred HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45778999999963267899999999999999999999999999999999999999999999999999976534579999
Q ss_pred ecCHHHHHh-hcCeEEEEECCEEEEeeC
Q 046954 100 SHSIKQIQR-IADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 100 tH~~~~~~~-~~d~v~~l~~G~i~~~g~ 126 (146)
|||++++.+ +||++++|++|++++..+
T Consensus 459 sHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 459 SHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred ecchhhhhhhhheeEEEecCCceEEeec
Confidence 999999987 599999999999876543
No 283
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=4.7e-28 Score=171.95 Aligned_cols=121 Identities=36% Similarity=0.492 Sum_probs=111.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||++|+.|+-..++...+...+...+++++++...+++.+.+||||||||++|+|-|..-|++|+||||||+||+.+++.
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 78999999866665545667788899999998778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
+-++|.++.++++.++++||||.+++.+.+|+++-+..|++
T Consensus 172 ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999888899999999999999999999999999976
No 284
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2.1e-27 Score=175.24 Aligned_cols=88 Identities=32% Similarity=0.471 Sum_probs=81.7
Q ss_pred cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+++. + |.|+|++||+++++.. ||++++|
T Consensus 120 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l 196 (207)
T cd03369 120 SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVM 196 (207)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEE
Confidence 45788999999999999999999999999999999999999999999999984 3 8999999999999876 9999999
Q ss_pred ECCEEEEeeCc
Q 046954 117 VNGEIVEVLKP 127 (146)
Q Consensus 117 ~~G~i~~~g~~ 127 (146)
++|+++..|++
T Consensus 197 ~~g~i~~~g~~ 207 (207)
T cd03369 197 DAGEVKEYDHP 207 (207)
T ss_pred ECCEEEecCCC
Confidence 99999887753
No 285
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=1.4e-27 Score=215.99 Aligned_cols=126 Identities=26% Similarity=0.397 Sum_probs=106.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++|+.++. ...++++.++++..++.+.. ....+..||||||||++|||||+++|++|||||||
T Consensus 1325 TIr~NL~~~~-----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT 1399 (1495)
T PLN03232 1325 TVRFNIDPFS-----EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399 (1495)
T ss_pred cHHHHcCCCC-----CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 7889997652 23466778888887774211 12335689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|+|++.|+++++....
T Consensus 1400 SaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1400 ASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999874 38999999999999977 9999999999999999999986543
No 286
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=1.5e-27 Score=216.57 Aligned_cols=125 Identities=28% Similarity=0.404 Sum_probs=105.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++||.++. ...++++.++++..++.+.. ....+..||||||||++|||||+++|++|||||||
T Consensus 1328 TIreNLd~~~-----~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT 1402 (1622)
T PLN03130 1328 TVRFNLDPFN-----EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT 1402 (1622)
T ss_pred cHHHHhCcCC-----CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7889997652 23466788888877763211 12335689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||..+.+.+.+.|++.. .++|+|+|+|+++.+.. ||||++|++|+|++.|+++++...
T Consensus 1403 SaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1403 AAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999875 38999999999999977 899999999999999999998653
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=1.9e-27 Score=197.50 Aligned_cols=125 Identities=31% Similarity=0.480 Sum_probs=99.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCC----------hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...++++.++++..++. +...+..+..||||||||++||||++++|+++||||||
T Consensus 407 ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 407 TVAENIARFGE----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred cHHHHHhccCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 67899975431 12334444444443331 12345567889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
++||+.+...+.+.|.++.. .|+|+|++||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 483 s~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 483 SNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999853 489999999999876 569999999999999999887653
No 288
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.95 E-value=1.8e-27 Score=175.05 Aligned_cols=110 Identities=27% Similarity=0.376 Sum_probs=96.2
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|++||+.+.... ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.
T Consensus 89 tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 163 (201)
T cd03231 89 SVLENLRFWHAD----HSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163 (201)
T ss_pred CHHHHHHhhccc----ccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 567887764321 1345678899999996 56788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
+.+.|.++++ .|.|+|++||+......+|++++.+
T Consensus 164 l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 164 FAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence 9999999875 4899999999999999999999887
No 289
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=2.1e-27 Score=197.61 Aligned_cols=126 Identities=27% Similarity=0.288 Sum_probs=103.2
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.||+.++...........++..+++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 402 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 481 (552)
T TIGR03719 402 TVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481 (552)
T ss_pred cHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 67888887643222111233456789999995335688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-CEEE-EeeCcccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLL 130 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~ 130 (146)
+.+.|.++. + |||+||||++++..+||++++|++ |+++ ..|+.+++
T Consensus 482 l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 482 LEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred HHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 999999872 4 899999999999999999999987 5876 45666544
No 290
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.95 E-value=3.7e-27 Score=196.52 Aligned_cols=126 Identities=35% Similarity=0.491 Sum_probs=103.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...++++.++++.+++.+. .....+..||||||||++||||++++|+++||||||
T Consensus 429 Ti~~Ni~~~~~----~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 429 SVMENIRYGRP----DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504 (576)
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcc
Confidence 68999987631 1235567777777665311 112345679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
++||+.+.+.+.+.++++.+ ++|+|+|||++..+ ..+|+|++|++|++++.|+.+++...
T Consensus 505 s~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 505 SALDAESEQLVQQALETLMK--GRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred cccCHHHHHHHHHHHHHHhC--CCEEEEEecchHHH-HhCCEEEEEECCEEEeeecHHHHHHc
Confidence 99999999999999999853 89999999999776 56999999999999999998887554
No 291
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.2e-27 Score=197.69 Aligned_cols=127 Identities=25% Similarity=0.266 Sum_probs=104.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.+|+.++............+..+++.+++.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..
T Consensus 404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 483 (556)
T PRK11819 404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRA 483 (556)
T ss_pred CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 67888887643222111233456789999995335688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC-CEEE-EeeCccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLLS 131 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~~ 131 (146)
+.+.|.++. | |||+||||++++..+||++++|++ |++. ..|+.+++.
T Consensus 484 l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~ 532 (556)
T PRK11819 484 LEEALLEFP---G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYE 532 (556)
T ss_pred HHHHHHhCC---C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence 999998862 4 899999999999999999999996 7876 467766553
No 292
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.7e-27 Score=174.44 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=80.0
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHhhcCeEE
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV-SHSIKQIQRIADVVC 114 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i-tH~~~~~~~~~d~v~ 114 (146)
.++++.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.+.|+|++ +|+.+.+.++||+++
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 4677889999999999999999999999999999999999999999999999976546666555 566789999999999
Q ss_pred EEECCEEEEee
Q 046954 115 LLVNGEIVEVL 125 (146)
Q Consensus 115 ~l~~G~i~~~g 125 (146)
+|++|+++..|
T Consensus 192 ~l~~G~i~~~g 202 (202)
T cd03233 192 VLYEGRQIYYG 202 (202)
T ss_pred EEECCEEEecC
Confidence 99999997653
No 293
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-27 Score=191.80 Aligned_cols=133 Identities=30% Similarity=0.456 Sum_probs=111.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||..||.+|. .+...+++.+++++.++.+.+ ....+..|||||||||+||||++.+|+++++||||
T Consensus 440 TIl~NI~YGn----~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT 515 (591)
T KOG0057|consen 440 TILYNIKYGN----PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT 515 (591)
T ss_pred hHHHHhhcCC----CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence 6788888874 344677888999999884321 22345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF 141 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 141 (146)
|+||.++.+.+.+.+.+.. .|+|+|+|-|+++.+.. ||+|++|++|++.+.|+.+++.. +......+
T Consensus 516 S~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~ 582 (591)
T KOG0057|consen 516 SALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA-PSELYADL 582 (591)
T ss_pred cccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence 9999999999999999953 38999999999998876 89999999999999999999876 34443333
No 294
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=8.9e-27 Score=179.68 Aligned_cols=101 Identities=24% Similarity=0.355 Sum_probs=86.0
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l-~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
+++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+ .++. + +.|||++||+++.+ ..||++++|
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~-~~~d~i~~l 231 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHL-KKADKILIL 231 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHH-HhCCEEEEE
Confidence 346799999999999999999999999999999999999999999865 5554 3 78999999999987 579999999
Q ss_pred ECCEEEEeeCccccccCCCHHHHHH
Q 046954 117 VNGEIVEVLKPDLLSEAKHPMALRF 141 (146)
Q Consensus 117 ~~G~i~~~g~~~~~~~~~~~~~~~~ 141 (146)
++|+++..|+++++......+...+
T Consensus 232 ~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 232 HEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred ECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999887754333344443
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=4.3e-27 Score=170.15 Aligned_cols=98 Identities=26% Similarity=0.348 Sum_probs=87.7
Q ss_pred HHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 23 YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 23 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.++++.+++.....++++.+||||||||++||||++.+ |+++||||||++||+.+++.+.+.|+++++ .|.|||++|
T Consensus 68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivS 146 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIE 146 (176)
T ss_pred HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 45788899853236888999999999999999999999 999999999999999999999999999875 599999999
Q ss_pred cCHHHHHhhcCeEEEEECCEEE
Q 046954 101 HSIKQIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G~i~ 122 (146)
|+++++ ..||++++|++|+..
T Consensus 147 H~~~~~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 147 HNLDVL-SSADWIIDFGPGSGK 167 (176)
T ss_pred CCHHHH-HhCCEEEEECCCCCC
Confidence 999987 579999999886653
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=3.6e-27 Score=168.51 Aligned_cols=81 Identities=37% Similarity=0.686 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
+|||||+||++||||++.+|+++||||||++||+.+++.+.+.|+++++ .|.|+|++||+++++.++||++++|++|++
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4999999999999999999999999999999999999999999999975 489999999999999999999999999998
Q ss_pred EE
Q 046954 122 VE 123 (146)
Q Consensus 122 ~~ 123 (146)
++
T Consensus 161 ~~ 162 (163)
T cd03216 161 VG 162 (163)
T ss_pred Ee
Confidence 75
No 297
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-27 Score=195.79 Aligned_cols=108 Identities=28% Similarity=0.316 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||+|
T Consensus 133 ~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiiv 208 (530)
T PRK15064 133 ARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIII 208 (530)
T ss_pred HHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEE
Confidence 45778899999963334578899999999999999999999999999999999999999999999853 48999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEE-EeeCccccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLS 131 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 131 (146)
|||++++.++||+|++|++|+++ +.|+++++.
T Consensus 209 sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 209 SHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred eCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999994 778877653
No 298
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=2.1e-27 Score=172.26 Aligned_cols=78 Identities=32% Similarity=0.568 Sum_probs=75.0
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++++ .|.|+|++||+++++.++||++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999975 489999999999999999999999999974
No 299
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=4.8e-27 Score=178.73 Aligned_cols=95 Identities=29% Similarity=0.480 Sum_probs=87.0
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
.+.++.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++.+.. |||+++
T Consensus 150 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~ 226 (257)
T cd03288 150 VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLV 226 (257)
T ss_pred eccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEE
Confidence 455678999999999999999999999999999999999999999999999874 3 8999999999999876 999999
Q ss_pred EECCEEEEeeCccccccC
Q 046954 116 LVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 116 l~~G~i~~~g~~~~~~~~ 133 (146)
|++|++++.|+++++...
T Consensus 227 l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 227 LSRGILVECDTPENLLAQ 244 (257)
T ss_pred EECCEEEEeCCHHHHHhc
Confidence 999999999998887543
No 300
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=4.3e-27 Score=173.04 Aligned_cols=90 Identities=27% Similarity=0.443 Sum_probs=83.0
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh-hcCeEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-IADVVCLL 116 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~-~~d~v~~l 116 (146)
..+.+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.++++ .|.|+|++||+++.+.. +||++++|
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEE
Confidence 34468999999999999999999999999999999999999999999999875 48999999999999988 79999999
Q ss_pred ECCEEEEeeCcc
Q 046954 117 VNGEIVEVLKPD 128 (146)
Q Consensus 117 ~~G~i~~~g~~~ 128 (146)
++|++++.|+.+
T Consensus 179 ~~G~i~~~~~~~ 190 (200)
T cd03217 179 YDGRIVKSGDKE 190 (200)
T ss_pred ECCEEEEEccHH
Confidence 999999988443
No 301
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=1.7e-27 Score=173.57 Aligned_cols=103 Identities=32% Similarity=0.547 Sum_probs=87.0
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 57888887533222111 134577889999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+.+.|+++++ .|+|||++||++++
T Consensus 164 ~~~~~~l~~~~~-~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQMLAILRRLRA-EGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeecccc
Confidence 999999999975 48999999999875
No 302
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.1e-27 Score=167.18 Aligned_cols=123 Identities=26% Similarity=0.439 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
+..+..|++.+.++....|..|..+||||+||+.|||-|+..|+++++||||.|||...+..++++++.+.++.|.++++
T Consensus 128 R~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~vi 207 (258)
T COG4107 128 RAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred HHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEE
Confidence 45577899999998667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHH
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRF 141 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~ 141 (146)
+|||+..+.-+++|.++|++|++++.|-++.+. .+.++++.-+
T Consensus 208 VTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 208 VTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred EechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHHHH
Confidence 999999999999999999999999999888765 4566776544
No 303
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=196.07 Aligned_cols=128 Identities=30% Similarity=0.388 Sum_probs=109.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.||+.+.....+.. ..++++.++++.+++. ++.++++.+||+||+||++|||||+.+|+++||||||+|||+.++
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 4678887643322211 1234577889999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.+.+.|+++++ .|.|+|++||+++.+. .||++++|++|++++.|++++..
T Consensus 181 ~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 181 EEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 999999999875 4999999999999875 69999999999999999988763
No 304
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=8.6e-27 Score=177.48 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
..+.++++.+++. +..++++.+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++++ .|+|||++
T Consensus 118 ~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIii 195 (255)
T cd03236 118 GKLDELVDQLELR-HVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVV 195 (255)
T ss_pred HHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEE
Confidence 4577889999996 467889999999999999999999999999999999999999999999999999975 48999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEe
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~ 124 (146)
||+++.+..+||+|++| +|++.+.
T Consensus 196 SHd~~~~~~~ad~i~~l-~~~~~~~ 219 (255)
T cd03236 196 EHDLAVLDYLSDYIHCL-YGEPGAY 219 (255)
T ss_pred ECCHHHHHHhCCEEEEE-CCCCCcc
Confidence 99999999999999999 5666543
No 305
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=8.2e-27 Score=172.31 Aligned_cols=112 Identities=26% Similarity=0.306 Sum_probs=95.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.+.....+ ...+++.++++.+++. .+.++++++||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 89 tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 165 (207)
T PRK13539 89 TVAENLEFWAAFLG--GEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVAL 165 (207)
T ss_pred cHHHHHHHHHHhcC--CcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 57788876433222 1234578899999996 46788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
+.+.|.++++ .|.|+|++||+++++.. |+++-++.
T Consensus 166 l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 166 FAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999875 49999999999999876 99888744
No 306
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=9.3e-27 Score=186.97 Aligned_cols=124 Identities=31% Similarity=0.508 Sum_probs=109.5
Q ss_pred ChHHHhhcCcccc-C----CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLR-G----KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||.|||.++.... . .....+++.++.+++|++- ..+.++.+||-|+||||.|.+||.++|++|||||||+-|.|
T Consensus 95 TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP 173 (501)
T COG3845 95 TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173 (501)
T ss_pred chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 7899999986431 1 1123467888999999974 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
.....+++.++++++ .|+|||+|||.++++.++|||+-+|++|+++...+
T Consensus 174 ~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 174 QEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999986 59999999999999999999999999999876655
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=1.3e-26 Score=208.84 Aligned_cols=99 Identities=28% Similarity=0.502 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCChhh-----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 19 ENEVYKLLSLADLDSSF-----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
++++.++++.+++. ++ .+..+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 546 ~~~v~~a~~~~~l~-~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~ 624 (1466)
T PTZ00265 546 DSEVVDVSKKVLIH-DFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624 (1466)
T ss_pred HHHHHHHHHHhCcH-HHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 45677788888774 22 2356789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEecCHHHHHhhcCeEEEEECC
Q 046954 88 LKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 88 l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G 119 (146)
+.++.|+|+|+|||+++.+ +.||+|++|++|
T Consensus 625 ~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 625 LKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 8654589999999999988 579999999986
No 308
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.4e-27 Score=170.41 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=115.3
Q ss_pred ChHHHhhcCccccC----------CCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRG----------KKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.++....+ ....+.+++++|...||. +..++..+.||.||||++.|++.++++|++|++|||+
T Consensus 97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPv 175 (249)
T COG4674 97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175 (249)
T ss_pred cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCcc
Confidence 68999988643211 112245799999999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
+|+......+..++|+.++. +++|++|.|||.++..++++|-+|++|.+..+|+.+++.++
T Consensus 176 AGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 176 AGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred CCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 99999999999999999975 79999999999999999999999999999999999998654
No 309
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.2e-27 Score=197.21 Aligned_cols=108 Identities=25% Similarity=0.361 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
..++..+++.+++.....++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|.++ . | |||+
T Consensus 407 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-g-tvi~ 482 (638)
T PRK10636 407 EQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-G-ALVV 482 (638)
T ss_pred HHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-C-eEEE
Confidence 3467789999999644678899999999999999999999999999999999999999999999999886 2 4 9999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
||||++++..+||+|++|++|+++ +.|+.+++
T Consensus 483 vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 483 VSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999999997 67777665
No 310
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=1.5e-26 Score=209.53 Aligned_cols=125 Identities=25% Similarity=0.409 Sum_probs=105.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcC-CCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANE-PEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~-p~llllDEP 69 (146)
|+++||..+. ..+++++.++++.+++.+.. ....+.+||||||||++|||||+++ |++||||||
T Consensus 1399 TIreNIdp~~-----~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1399 TVRQNVDPFL-----EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473 (1560)
T ss_pred cHHHHhCccc-----CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 7889996531 23467788889888874311 1123468999999999999999995 899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
||+||+.+.+.+.+.|.+.. .++|+|+|+|+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 1474 TSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1474 TANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred CccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999864 38999999999998865 899999999999999999998653
No 311
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=1.8e-26 Score=169.87 Aligned_cols=83 Identities=31% Similarity=0.543 Sum_probs=75.1
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
.++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+. +.++.++ |.|||++||+++.+.. ||+++
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~ 198 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIV 198 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEE
Confidence 4556789999999999999999999999999999999999999999984 5666543 8999999999999987 99999
Q ss_pred EEECCE
Q 046954 115 LLVNGE 120 (146)
Q Consensus 115 ~l~~G~ 120 (146)
+|++|+
T Consensus 199 ~l~~G~ 204 (204)
T cd03250 199 VLDNGR 204 (204)
T ss_pred EEeCCC
Confidence 999985
No 312
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-26 Score=170.03 Aligned_cols=83 Identities=36% Similarity=0.459 Sum_probs=78.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEEC-C
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-G 119 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~-G 119 (146)
+|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++++ .|.|+|++||+++ .+..+||++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999875 4899999999998 47889999999999 9
Q ss_pred EEEEee
Q 046954 120 EIVEVL 125 (146)
Q Consensus 120 ~i~~~g 125 (146)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 998754
No 313
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.94 E-value=1.5e-26 Score=169.41 Aligned_cols=83 Identities=34% Similarity=0.505 Sum_probs=78.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCE
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGE 120 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~ 120 (146)
+|||||+||++|||||+.+|+++||||||++||+.+++.+.+.|.++.+ .|+|+|++||+++ ++..+||++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 8999999999999999999999999999999999999999999999875 4999999999996 7889999999999999
Q ss_pred EEEee
Q 046954 121 IVEVL 125 (146)
Q Consensus 121 i~~~g 125 (146)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 97653
No 314
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=2.4e-26 Score=208.21 Aligned_cols=126 Identities=29% Similarity=0.387 Sum_probs=104.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++|+.... ...++++.++++.+++.+. .....+..||||||||++|||||+++|++|||||||
T Consensus 1375 TIr~NLdp~~-----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT 1449 (1522)
T TIGR00957 1375 SLRMNLDPFS-----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449 (1522)
T ss_pred cHHHHcCccc-----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 6888986321 2346677788887776321 112345679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||||++|++|+|++.|+++++....
T Consensus 1450 SalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1450 AAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999874 38999999999999876 8999999999999999999986543
No 315
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=1.5e-26 Score=208.25 Aligned_cols=126 Identities=24% Similarity=0.319 Sum_probs=107.4
Q ss_pred ChHHHhhcCccccCC---C--ccHHHHHHHHHHcCCChhhhcCCc-----CCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLSKTG-----AEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.+++..+.. + ...+.++++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 789999987543311 1 1123578899999996 5677765 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEEC-CEEEEeeCcc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-GEIVEVLKPD 128 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 128 (146)
+|||+.++..+++.|+++++ .|+|||+++|+++ .+.+++|++++|++ |++++.|++.
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 99999999999999999976 4999999999998 57889999999996 8999999864
No 316
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.3e-26 Score=166.84 Aligned_cols=78 Identities=47% Similarity=0.747 Sum_probs=75.1
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
|||||+||++|||||+.+|+++||||||++||+.++..+.+.|.+++++ |.|+|++||+++++..+||++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999765 89999999999999999999999999974
No 317
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=3.2e-26 Score=170.11 Aligned_cols=113 Identities=27% Similarity=0.474 Sum_probs=88.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++|+.++... ...+..++++.+++... ..+.++..|||||||||+||||++.+|+++||||||
T Consensus 94 t~~~nl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 168 (218)
T cd03290 94 TVEENITFGSPF-----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPF 168 (218)
T ss_pred cHHHHHhhcCcC-----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 567888765321 12233445555555311 124578899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH--HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 71 SALDPISTQNIED--VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 71 ~~LD~~~~~~~~~--~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
++||+.++..+.+ ++..++ +.|.|+|++||+++.+. .||++++|++|+
T Consensus 169 ~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 169 SALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred cccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 9999999999998 566664 45899999999999885 699999999884
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=3.3e-26 Score=193.17 Aligned_cols=126 Identities=25% Similarity=0.249 Sum_probs=102.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.+|+.++...........++..+++.+++..+..++++++|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus 399 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~ 478 (635)
T PRK11147 399 TVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLEL 478 (635)
T ss_pred CHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 57888876532111111134577889999986446788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEEEE-eeCcccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVE-VLKPDLL 130 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i~~-~g~~~~~ 130 (146)
+.+.+.++ +.|||+||||.+++..+||++++|+ +|++.. .|+.+++
T Consensus 479 l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 479 LEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99998775 4599999999999999999999998 899864 4544443
No 319
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=175.10 Aligned_cols=110 Identities=31% Similarity=0.446 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++...+.+.++++ .+.+.+++.||-|||.|+.||.+|+++|++|+|||||-|||..++..+.+.++++++++++||+++
T Consensus 135 ~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllT 213 (325)
T COG4586 135 ERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213 (325)
T ss_pred HHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEE
Confidence 4556677888985 578889999999999999999999999999999999999999999999999999998899999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
||+++.+..+||||++|+.|+++.+|+.+++
T Consensus 214 TH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 (325)
T ss_pred ecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence 9999999999999999999999999887665
No 320
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=2e-26 Score=166.60 Aligned_cols=83 Identities=35% Similarity=0.590 Sum_probs=77.7
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECC
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G 119 (146)
+.+|||||+||++||||++.+|+++||||||++||+.+++.+.+.|.++. + +.|+|++||+++++. .||++++|++|
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g 172 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENG 172 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECC
Confidence 67899999999999999999999999999999999999999999999984 3 899999999999986 69999999999
Q ss_pred EEEEee
Q 046954 120 EIVEVL 125 (146)
Q Consensus 120 ~i~~~g 125 (146)
++++.|
T Consensus 173 ~i~~~~ 178 (178)
T cd03247 173 KIIMQG 178 (178)
T ss_pred EEEecC
Confidence 998653
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.94 E-value=1.5e-26 Score=166.62 Aligned_cols=77 Identities=35% Similarity=0.585 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ .|+|+|++||+++++ .+||++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999975 499999999999988 57999999999974
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=2.8e-26 Score=195.36 Aligned_cols=107 Identities=26% Similarity=0.325 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++..+++.+++.....++++.+|||||||||+||||++.+|++|||||||++||+.++..+.+.+.++ .| |||+
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIi 679 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLM 679 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEE
Confidence 4567889999999644678899999999999999999999999999999999999999999998887664 24 9999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEE-EeeCccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIV-EVLKPDL 129 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 129 (146)
||||++++..+||++++|++|+++ ..|+.++
T Consensus 680 vSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 680 VSHDEHLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred EECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999999999999999999999997 5666544
No 323
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=1.7e-26 Score=207.65 Aligned_cols=127 Identities=27% Similarity=0.394 Sum_probs=108.2
Q ss_pred ChHHHhhcCccccCC---C--ccHHHHHHHHHHcCCChhhhcCCcC----CCChhHHHHHHHHHHHhcCCC-EEEeeCCC
Q 046954 1 TVADNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLSKTGA----EISVGQAQRVALARTLANEPE-VLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgG~~qrv~ia~al~~~p~-llllDEPt 70 (146)
||+||+.+.+..+.. + ...++++++++.+++. +..++.++ .||||||||++||++|+.+|+ +|+|||||
T Consensus 852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 789999987544321 1 1134578899999995 56787776 799999999999999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-HHhhcCeEEEEECC-EEEEeeCccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADVVCLLVNG-EIVEVLKPDL 129 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-~~~~~d~v~~l~~G-~i~~~g~~~~ 129 (146)
+|||+.++..+.+.|+++++ .|+|||+++|+++. +.+.+|++++|++| ++++.|++.+
T Consensus 931 sgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 931 SGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999999999999975 59999999999986 45789999999997 9999998753
No 324
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.6e-26 Score=166.00 Aligned_cols=78 Identities=51% Similarity=0.827 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|+|++||+++++..+||++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999976447999999999999999999999999985
No 325
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=2.5e-26 Score=168.49 Aligned_cols=109 Identities=23% Similarity=0.353 Sum_probs=90.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.+...... ....++.++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 89 tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 165 (198)
T TIGR01189 89 SALENLHFWAAIHG--GAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVAL 165 (198)
T ss_pred cHHHHHHHHHHHcC--CcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 57788876533222 1234577889999995 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
+.+.|.++++ .|.|+|++||+...+ .++|++.
T Consensus 166 l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 166 LAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred HHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence 9999999865 489999999998554 3577654
No 326
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=193.60 Aligned_cols=108 Identities=23% Similarity=0.274 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
..++..+++.+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.+...+.+.|.++ +.|||+
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tvii 201 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLIL 201 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEE
Confidence 3567889999999534678899999999999999999999999999999999999999999999998764 569999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
||||++++..+||+|++|++|+++ ..|+.+.+
T Consensus 202 vsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 202 ISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 999999999999999999999996 45665543
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=3.3e-26 Score=190.58 Aligned_cols=105 Identities=27% Similarity=0.292 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+++..+++.+|++ . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+|
T Consensus 143 ~~~~~~l~~~gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviii 216 (556)
T PRK11819 143 SQLEIAMDALRCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAV 216 (556)
T ss_pred HHHHHHHHhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEE
Confidence 4567788999995 3 68899999999999999999999999999999999999999999999999876 2499999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
|||++++..+||+|++|++|+++ ..|+.+++
T Consensus 217 sHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 217 THDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999986 67777654
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=5.9e-26 Score=205.43 Aligned_cols=124 Identities=27% Similarity=0.458 Sum_probs=100.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.|+.. .+++++.++++..++..++ ....+.+||||||||++||||+.++|+++||||||
T Consensus 694 TIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 694 TVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred cHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 78999999742 2455666777766663221 22345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+||+.+.+.+.+. +.... .|+|+|+|||+++.+ ..||+|++|++|++++.|+.+++..
T Consensus 769 SaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 769 SALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred cccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhH-HhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999988765 44443 489999999999876 5699999999999999999887753
No 329
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=3.5e-26 Score=165.54 Aligned_cols=87 Identities=25% Similarity=0.338 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~ 122 (146)
||||||||++||||++.+|+++||||||++||+.++..+.+.+.+++++.+.|+|++||+++++..+||++++|+++-.+
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999999999999999999999999999999987543489999999999999999999999988655
Q ss_pred Ee--eCccc
Q 046954 123 EV--LKPDL 129 (146)
Q Consensus 123 ~~--g~~~~ 129 (146)
.+ |.|..
T Consensus 152 ~~~~~~~~~ 160 (177)
T cd03222 152 YGIASQPKG 160 (177)
T ss_pred ceeccCCcc
Confidence 33 45543
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=3.1e-26 Score=206.00 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=107.7
Q ss_pred ChHHHhhcCccccC-------CCcc--HHH-HHHHHHHcCCChhhhcCC-----cCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954 1 TVADNIRYGPQLRG-------KKLT--ENE-VYKLLSLADLDSSFLSKT-----GAEISVGQAQRVALARTLANEPEVLL 65 (146)
Q Consensus 1 tv~eni~~~~~~~~-------~~~~--~~~-~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~lll 65 (146)
||+||+.|++..+. .... .++ ++.+++.+||. +..+.+ ++.|||||||||+||++|+.+|++++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 78999998754321 1111 122 35578999996 455544 56799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +.+.+++|+|++|++|++++.|+++++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 99999999999999999999999875699999999996 689999999999999999999998654
No 331
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=9.5e-26 Score=203.97 Aligned_cols=124 Identities=23% Similarity=0.357 Sum_probs=104.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS----------KTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|+++|+.... ...++++.++++.+++.+...+ ..+..||||||||++|||||+++|++|||||||
T Consensus 1307 TIR~NLdp~~-----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaT 1381 (1490)
T TIGR01271 1307 TFRKNLDPYE-----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381 (1490)
T ss_pred CHHHHhCccc-----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 6888986431 2346778889998887432111 123479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+||+.+...+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|+|++.|++.++..
T Consensus 1382 S~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1382 AHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999874 38999999999998876 89999999999999999998764
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=7e-26 Score=189.61 Aligned_cols=97 Identities=27% Similarity=0.436 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.++.++++.+++. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++++ + |.|||+|
T Consensus 191 ~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIiv 267 (590)
T PRK13409 191 GKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVV 267 (590)
T ss_pred HHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEE
Confidence 4577889999996 57899999999999999999999999999999999999999999999999999996 4 9999999
Q ss_pred ecCHHHHHhhcCeEEEEECC
Q 046954 100 SHSIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G 119 (146)
||+++++..+||+|++|++|
T Consensus 268 sHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999874
No 333
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.1e-25 Score=204.39 Aligned_cols=124 Identities=29% Similarity=0.440 Sum_probs=100.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.|+.. .+++++.++++.+++..++ ....+.+|||||||||+||||++++|+++||||||
T Consensus 694 TIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 694 TVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred CHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 79999999742 2355667777776663221 22345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+||+.+.+.+.+ .+..+. .|+|+|+|||++..+. .||+|++|++|++++.|+.+++..
T Consensus 769 SALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 769 SALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred cccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999988865 555553 3899999999998764 599999999999999999888753
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=1.3e-25 Score=191.34 Aligned_cols=107 Identities=29% Similarity=0.337 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.++..++..+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||+|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviiv 397 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVV 397 (718)
T ss_pred HHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEE
Confidence 456677888888645678899999999999999999999999999999999999999999999999775 6799999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
|||.+++..+||+|++|++|++. +.|+.+.+
T Consensus 398 sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 398 SHAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999996 56666544
No 335
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=9.8e-26 Score=187.61 Aligned_cols=104 Identities=27% Similarity=0.287 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++.++++.+++. . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||
T Consensus 142 ~~~~~l~~~~l~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiis 215 (552)
T TIGR03719 142 KLEIAMDALRCP-P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVT 215 (552)
T ss_pred HHHHHHhhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEe
Confidence 355667778874 2 57889999999999999999999999999999999999999999999998875 35999999
Q ss_pred cCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 101 HSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
||++++..+||++++|++|+++ ..|+.+++
T Consensus 216 Hd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 216 HDRYFLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred CCHHHHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 9999999999999999999975 67777654
No 336
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=182.85 Aligned_cols=129 Identities=25% Similarity=0.372 Sum_probs=108.0
Q ss_pred ChHHHhhcCcc-c-c-C--CCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 046954 1 TVADNIRYGPQ-L-R-G--KKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~-~-~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L 73 (146)
+|.+|+.++.. . . . ... ..+.+..+.+.+++...-.+.++.+||||.||||.|||.|+.+|++|||||||.|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 57889887621 1 1 0 111 12346677888888644456788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|..++.+++++|.+++++ |++||++|-++.++..+||||++|++|+++.+-+.+++
T Consensus 433 DVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~ 488 (500)
T COG1129 433 DVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREEA 488 (500)
T ss_pred ccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999874 99999999999999999999999999999987766654
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=1.2e-25 Score=189.71 Aligned_cols=105 Identities=31% Similarity=0.426 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
..++..+++.+|+. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+
T Consensus 136 ~~~~~~~l~~lgl~---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvli 208 (635)
T PRK11147 136 ENRINEVLAQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIF 208 (635)
T ss_pred HHHHHHHHHhCCCC---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEE
Confidence 35678889999984 37889999999999999999999999999999999999999999999999876 359999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEE-eeCcccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVE-VLKPDLL 130 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 130 (146)
||||.+++..+||+|++|++|+++. .|+.+.+
T Consensus 209 vsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 209 ISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 9999999999999999999999974 5766544
No 338
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=3.9e-25 Score=184.14 Aligned_cols=105 Identities=26% Similarity=0.373 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHcCCChhhhcCC------cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH-HHHH
Q 046954 18 TENEVYKLLSLADLDSSFLSKT------GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV-KLKK 90 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~~~~~~~------~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~-~l~~ 90 (146)
.++++.++++.+++.+ +.+.. ...||||||||++||||++.+|+++||||||++||+.+.+.+.+.+. .+.
T Consensus 441 ~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~- 518 (555)
T TIGR01194 441 SLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK- 518 (555)
T ss_pred hHHHHHHHHHHcCCch-hhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-
Confidence 3456778899999863 33322 35799999999999999999999999999999999999999998765 443
Q ss_pred hcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 91 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 91 ~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
..|+|+|+|||+++.+ +.||+|++|++|++++.-
T Consensus 519 ~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 519 RQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred hCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 3489999999999876 579999999999998653
No 339
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=4.4e-25 Score=183.46 Aligned_cols=105 Identities=31% Similarity=0.361 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCChhhhcCC-----cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046954 19 ENEVYKLLSLADLDSSFLSKT-----GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
++.+.++++.+++.. ..+.. +.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+..++.|
T Consensus 422 ~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 500 (547)
T PRK10522 422 PALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500 (547)
T ss_pred HHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 456777888888853 22221 458999999999999999999999999999999999999999999987654458
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 94 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 94 ~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
+|+|+|||+++.+ +.||+|++|++|++++..
T Consensus 501 ~tvi~itH~~~~~-~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 501 KTIFAISHDDHYF-IHADRLLEMRNGQLSELT 531 (547)
T ss_pred CEEEEEEechHHH-HhCCEEEEEECCEEEEec
Confidence 9999999999765 569999999999998763
No 340
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2e-25 Score=166.36 Aligned_cols=106 Identities=29% Similarity=0.427 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-HGMTIVM 98 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~-~g~tvi~ 98 (146)
+++..+++.+|+. ++.+++..+||.||||||.|||||+.+|++||||||++|||..+++.+.+.|.+++.. .+.++|+
T Consensus 150 ~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~ 228 (257)
T COG1119 150 AAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF 228 (257)
T ss_pred HHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEE
Confidence 4577889999995 6899999999999999999999999999999999999999999999999999998753 2689999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
|||..+++....++++.+++|+++..|.
T Consensus 229 VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 229 VTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999998764
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=2.5e-25 Score=159.37 Aligned_cols=76 Identities=36% Similarity=0.460 Sum_probs=70.6
Q ss_pred CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 39 TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.|.++ +.|+|++||+++.. .+||++++|++
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~ 162 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDG 162 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcC
Confidence 46899999999999999999999999999999999999999999999875 58999999999865 68999999987
Q ss_pred C
Q 046954 119 G 119 (146)
Q Consensus 119 G 119 (146)
|
T Consensus 163 ~ 163 (166)
T cd03223 163 E 163 (166)
T ss_pred C
Confidence 6
No 342
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.6e-25 Score=163.96 Aligned_cols=107 Identities=22% Similarity=0.389 Sum_probs=90.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.+....+. ..+++..+++.+++. +..++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 86 tv~~~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~ 161 (195)
T PRK13541 86 TVFENLKFWSEIYN---SAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL 161 (195)
T ss_pred CHHHHHHHHHHhcc---cHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 57788876533221 234677888999995 56788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v 113 (146)
+.+.+.+..+ .|.|+|++||+++.+.. +|-+
T Consensus 162 l~~~l~~~~~-~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 162 LNNLIVMKAN-SGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCccccch-hhee
Confidence 9999987654 58999999999988865 6654
No 343
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=5.4e-25 Score=191.00 Aligned_cols=136 Identities=28% Similarity=0.402 Sum_probs=111.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~ 77 (146)
|+.|++.|...... ..+..+.++.+||.....++++.+|||||+||+.||++|+.+| +++||||||+|||+..
T Consensus 793 tv~E~l~~f~~~~~----i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~ 868 (943)
T PRK00349 793 TVEEALEFFEAIPK----IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED 868 (943)
T ss_pred cHHHHHHHHHhchh----hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH
Confidence 45556555432211 1234567889999632468889999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+..+.+.|.++.+ .|.|||+|||+++.+. .||+|+.| ++|++++.|+++++.....+++..|+
T Consensus 869 ~~~L~~~L~~l~~-~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l 937 (943)
T PRK00349 869 IRKLLEVLHRLVD-KGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYL 937 (943)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHH
Confidence 9999999999975 5999999999999885 79999999 79999999999998654446666665
No 344
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.6e-25 Score=163.42 Aligned_cols=108 Identities=26% Similarity=0.345 Sum_probs=90.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.+|+.++.... .....+.++++.+++. +..++++.+|||||+||++||||++.+|+++||||||+|||+.++..
T Consensus 90 tv~~~~~~~~~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~ 165 (200)
T PRK13540 90 TLRENCLYDIHFS---PGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT 165 (200)
T ss_pred CHHHHHHHHHhcC---cchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 5788887753211 1234678899999996 46788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
+.+.|+++++ .|.|+|++||+...+.. ||.-+
T Consensus 166 l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 166 IITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence 9999999865 48999999999888755 77643
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=6e-25 Score=198.79 Aligned_cols=93 Identities=28% Similarity=0.418 Sum_probs=84.1
Q ss_pred cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
..++..|||||||||+||||++.+|+++||||||++||+.+.+.+.+. +..+. .|+|+|++||+++.+.. ||+|++
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~ 619 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILL 619 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEE
Confidence 456789999999999999999999999999999999999999999985 66664 38999999999998864 999999
Q ss_pred EECCEEEEeeCcccccc
Q 046954 116 LVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 116 l~~G~i~~~g~~~~~~~ 132 (146)
|++|++++.|+.+++..
T Consensus 620 l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 620 LHEGVCYFYGTFSELQA 636 (1490)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999888754
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=8.3e-25 Score=160.60 Aligned_cols=129 Identities=26% Similarity=0.362 Sum_probs=106.2
Q ss_pred ChHHHhhcCcccc---CCC-----ccHHHHHHHHHHcCCC-hhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954 1 TVADNIRYGPQLR---GKK-----LTENEVYKLLSLADLD-SSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS 71 (146)
Q Consensus 1 tv~eni~~~~~~~---~~~-----~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~ 71 (146)
|+.||+.++.... +.. ...+...+.+..+++. +...+.+.+-|||||||-++++.|.++.|++|+|||-|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 7899998864321 111 1122344556665543 346677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954 72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 129 (146)
Q Consensus 72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 129 (146)
+|||.....+++.=.++..+.+.|.+||||+|+.+..|.+|.++|++|+|+.+.+.++
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~ 235 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence 9999999999999999988889999999999999999999999999999998766543
No 347
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.1e-25 Score=159.42 Aligned_cols=75 Identities=43% Similarity=0.682 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++. + ++|+|++||+++++.. ||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999985 3 7999999999999987 99999999985
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=8.2e-25 Score=198.30 Aligned_cols=126 Identities=27% Similarity=0.426 Sum_probs=98.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++... ++++..++++..++.. ...+.++.+||||||||++||||++.+|+++||||||
T Consensus 714 Ti~eNI~~g~~~-----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 714 SLRENILFGKAL-----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cHHHHhhcCCcc-----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 789999987431 1222333333222211 1234667899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~-~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
++||+.+.+.+.+.+.+.. ...|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999987531 1237999999999998865 99999999999999999887643
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.92 E-value=2.2e-25 Score=200.74 Aligned_cols=108 Identities=24% Similarity=0.254 Sum_probs=97.0
Q ss_pred HHHHHHHcCCChhhh-----cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 22 VYKLLSLADLDSSFL-----SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~-----~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
++.+++.+||+ +.. +..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..|+|+
T Consensus 312 ~~~~L~~lGL~-~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv 390 (1470)
T PLN03140 312 TDYTLKILGLD-ICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390 (1470)
T ss_pred HHHHHHHcCCc-cccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence 35678889995 333 556789999999999999999999999999999999999999999999999987668999
Q ss_pred EEEecCH-HHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 97 VMVSHSI-KQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 97 i~itH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|+++|++ .++..++|+|++|++|++++.|+++++
T Consensus 391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHH
Confidence 9999996 588899999999999999999998764
No 350
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.92 E-value=7.6e-25 Score=181.23 Aligned_cols=109 Identities=37% Similarity=0.566 Sum_probs=89.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++||+.++.. ...++++.++++..++.+. .....+.+||||||||++||||++++|+++||||||
T Consensus 411 ti~~Ni~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t 486 (529)
T TIGR02857 411 TIAENIRLARP----DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486 (529)
T ss_pred CHHHHHhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 68999988632 1245667777777776421 122345789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
++||+.+.+.+.+.+.++. .++|+|+|||+++.+. .||+|++|
T Consensus 487 s~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 487 AHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred cccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999985 3899999999998875 69999875
No 351
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.3e-25 Score=187.09 Aligned_cols=128 Identities=30% Similarity=0.450 Sum_probs=113.1
Q ss_pred ChHHHhhcCccccCC-----CccHHHHHHHHHHcCCChhhhcCCcC-----CCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGK-----KLTENEVYKLLSLADLDSSFLSKTGA-----EISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+|++.|.+..+-. ...+++++++++.+|+. ...|..++ .+||||||||+||.-|+++|.+|+|||||
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 799999998765432 12346789999999996 56777665 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+|||..+..++.+.|++++++ |+|||++-|++. .+.++.|++++|.+|++++.|++.++
T Consensus 199 SGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 199 SGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred CCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 999999999999999999987 999999999986 68899999999999999999998754
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.92 E-value=7.7e-25 Score=153.61 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=72.4
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECC
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G 119 (146)
..+||+||+||++|||||+.+|+++||||||++||+.++..+.+.++++ +.|+|++||+++++..+||++++|++|
T Consensus 68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 3459999999999999999999999999999999999999999999876 469999999999999999999999998
Q ss_pred E
Q 046954 120 E 120 (146)
Q Consensus 120 ~ 120 (146)
+
T Consensus 144 ~ 144 (144)
T cd03221 144 K 144 (144)
T ss_pred C
Confidence 5
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.8e-24 Score=155.85 Aligned_cols=124 Identities=26% Similarity=0.435 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++.+.++++|+-.+..+-++..||.||||||++||||+.+|+++|.||..++||..-+.++.+++.++.++.|.+.|+
T Consensus 126 ~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 126 RKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 35688889999997778899999999999999999999999999999999999999999999999999999889999999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHh
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFL 142 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~ 142 (146)
|+.++..+..++|.|+||++|++++.|++.++. .+.++.++++.
T Consensus 206 V~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRli 250 (267)
T COG4167 206 VTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred EechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHH
Confidence 999999999999999999999999999998864 56667666554
No 354
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=7.4e-25 Score=190.37 Aligned_cols=129 Identities=29% Similarity=0.524 Sum_probs=116.8
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|.+|++.+.++.++.+. -.+.++..++.+++. +..+++++.+|||+|+|+++|.|++.+|++++|||||+|+||.++
T Consensus 656 T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~ar 734 (885)
T KOG0059|consen 656 TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKAR 734 (885)
T ss_pred cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHH
Confidence 67899988888777542 234588899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.+++++.++++ .|+++|++||.|++++.+|||+.+|.+|++...|++.++.
T Consensus 735 r~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 735 RHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 999999999976 4679999999999999999999999999999999998764
No 355
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=9.9e-25 Score=189.37 Aligned_cols=105 Identities=30% Similarity=0.460 Sum_probs=95.9
Q ss_pred HHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 24 KLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 24 ~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+.++.+||. ++ .++++.+|||||+|||+||++|+.+| +++||||||+|||+.....+.++|+++++ .|.|||+|+
T Consensus 471 ~~L~~vGL~-~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVe 548 (943)
T PRK00349 471 KFLVDVGLD-YLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVE 548 (943)
T ss_pred HHhhccccC-CCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 367888885 34 68999999999999999999999997 99999999999999999999999999975 599999999
Q ss_pred cCHHHHHhhcCeEEEE------ECCEEEEeeCccccc
Q 046954 101 HSIKQIQRIADVVCLL------VNGEIVEVLKPDLLS 131 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 131 (146)
|+++++. .||+|++| ++|+++..|+++++.
T Consensus 549 H~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 549 HDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999986 69999999 999999999988764
No 356
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.92 E-value=2.7e-24 Score=182.15 Aligned_cols=111 Identities=24% Similarity=0.346 Sum_probs=91.6
Q ss_pred ChHHHhhcCccccC---CCccHHHHHHHHHHcCCChhhhcCC---------cCCCChhHHHHHHHHHHHhcCCCEEEeeC
Q 046954 1 TVADNIRYGPQLRG---KKLTENEVYKLLSLADLDSSFLSKT---------GAEISVGQAQRVALARTLANEPEVLLLDE 68 (146)
Q Consensus 1 tv~eni~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgG~~qrv~ia~al~~~p~llllDE 68 (146)
|++||+.++..... ....++++.++++.+++. ++.+++ +.+||||||||++||||++++|+++||||
T Consensus 530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 68899988643211 112355678889999985 445543 37899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 69 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 69 Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
||++||+.+...+.+.+++ .|+|+|+|||+++.+ ++||++++|+
T Consensus 609 pts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 609 CTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEe
Confidence 9999999999999988765 389999999999986 6799999996
No 357
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=2.4e-24 Score=194.38 Aligned_cols=128 Identities=27% Similarity=0.388 Sum_probs=107.3
Q ss_pred ChHHHhhcCcccc---CC--CccHHHHHHHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHh---cCCCEEEeeCCCC
Q 046954 1 TVADNIRYGPQLR---GK--KLTENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLA---NEPEVLLLDEPTS 71 (146)
Q Consensus 1 tv~eni~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~---~~p~llllDEPt~ 71 (146)
||.|++.++..-. .. ....+++ ++++.+|+. ++ .++++.+|||||+||++||++|+ .+|+++||||||+
T Consensus 764 tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~-~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTs 841 (1809)
T PRK00635 764 NIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD-YLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTT 841 (1809)
T ss_pred CHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc-chhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence 5778887764311 11 1112334 578889995 44 68899999999999999999998 6999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE------CCEEEEeeCcccccc
Q 046954 72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSE 132 (146)
Q Consensus 72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 132 (146)
|||+.....+.+.|.++++ .|.|||+|||+++.+ ++||++++|. +|++++.|+++++..
T Consensus 842 GLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 842 GLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999975 599999999999998 7999999996 789999999988753
No 358
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.1e-24 Score=187.04 Aligned_cols=104 Identities=30% Similarity=0.455 Sum_probs=94.5
Q ss_pred HHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 25 LLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 25 ~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.+..+||. .+ .++++.+|||||+|||.||++|+.+| +++||||||+|||+.....+.+.|+++++ .|.|||+|+|
T Consensus 470 ~L~~vgL~-~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDVGLD-YLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEH 547 (924)
T ss_pred hHhhcccc-ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEC
Confidence 46777885 34 68899999999999999999999986 89999999999999999999999999975 5999999999
Q ss_pred CHHHHHhhcCeEEEE------ECCEEEEeeCccccc
Q 046954 102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLS 131 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 131 (146)
+++++. +||+|++| ++|+|++.|+++++.
T Consensus 548 d~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 548 DEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 999886 89999999 999999999988763
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=5.2e-24 Score=193.19 Aligned_cols=123 Identities=27% Similarity=0.303 Sum_probs=96.7
Q ss_pred ChHHHhhcCccccCCCccHHHH---------HHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEV---------YKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
|++|||.++... ..++. .+.++.+ |+. ...++++.+|||||||||+||||++.+|+++|||||
T Consensus 736 Tv~enI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~-t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 736 TVRGNILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLE-TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred cHHHHHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccch-HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 689999986321 11112 2233333 553 345677899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
|++||+...+.+.+.+..... .|+|+|++||+++.+ ..||+|++|++|++++.|+.+++.
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999988775432222 389999999999988 469999999999999999987764
No 360
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=7.3e-24 Score=183.70 Aligned_cols=108 Identities=30% Similarity=0.424 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc---CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN---EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~---~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
+...+++.+||.....++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.|.++.+ .|.|||
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVI 885 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVV 885 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 345678889996324688899999999999999999997 5999999999999999999999999999975 599999
Q ss_pred EEecCHHHHHhhcCeEEEE------ECCEEEEeeCcccc
Q 046954 98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLL 130 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 130 (146)
++||+++.+. .||+++.| ++|++++.|+++++
T Consensus 886 vi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 886 VIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999885 69999999 79999999988764
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=6.1e-24 Score=188.01 Aligned_cols=125 Identities=30% Similarity=0.482 Sum_probs=103.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+|||.||.. .++++.++.++.+.|..++ ...++-+||||||||+++|||+.++++++|||.|+
T Consensus 597 TvreNILFG~~-----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054|consen 597 TVRENILFGSP-----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred cHHHhhhcCcc-----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence 79999999843 3456667777666664322 23467899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|++|....+.+++-.....- .++|+|++||.+.... .||.|++|++|+|.+.|+.+++..
T Consensus 672 SAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999877554322 3899999999987775 499999999999999999988754
No 362
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.1e-23 Score=149.24 Aligned_cols=78 Identities=45% Similarity=0.684 Sum_probs=74.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
+||+||+||++|||+++.+|++++|||||++||+.++..+.+.+.++.+. ++|++++||+++++..+||+++++++|+
T Consensus 80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 39999999999999999999999999999999999999999999998754 7999999999999999999999999875
No 363
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=169.64 Aligned_cols=91 Identities=32% Similarity=0.484 Sum_probs=84.3
Q ss_pred CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 39 TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
-...||||||||+++||||..+|.+++||||-|+||......+.+.|...++ .|.|+|+|||.++.+ ..+|+|++|++
T Consensus 469 ~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs~L-~~~Dkilvl~~ 546 (580)
T COG4618 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPSAL-ASVDKILVLQD 546 (580)
T ss_pred CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHHHH-hhcceeeeecC
Confidence 3568999999999999999999999999999999999999999999999975 599999999999866 56999999999
Q ss_pred CEEEEeeCccccc
Q 046954 119 GEIVEVLKPDLLS 131 (146)
Q Consensus 119 G~i~~~g~~~~~~ 131 (146)
|++...|+.+++.
T Consensus 547 G~~~~FG~r~eVL 559 (580)
T COG4618 547 GRIAAFGPREEVL 559 (580)
T ss_pred ChHHhcCCHHHHH
Confidence 9999999998863
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1.7e-23 Score=156.04 Aligned_cols=129 Identities=26% Similarity=0.342 Sum_probs=115.5
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|.+||+.+...+.+.. ..++.++++.+..+|. ++.+.|+.++|.||+-|++++.|...+|++||+||-.+-.|+.-+
T Consensus 105 TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence 6789998876665543 2345677888888885 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
++-.+.+.++.+ ++.|+|+||||++.+.++|||+++|++|+++..|+++++.
T Consensus 184 ~K~~~rl~e~~~-~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 184 EKCLERLNELVE-KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHHHHHHHHHH-cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 999999999965 4799999999999999999999999999999999998764
No 365
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=1.7e-23 Score=155.27 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=83.2
Q ss_pred HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954 26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95 (146)
Q Consensus 26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~----------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t 95 (146)
+...++. ++.++++.+||+||+||++||||++. +|+++||||||++||+.++..+.+.+.++++ .|.|
T Consensus 108 l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~t 185 (213)
T cd03279 108 LPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRM 185 (213)
T ss_pred hhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCE
Confidence 3444453 57788999999999999999999985 5789999999999999999999999999975 4899
Q ss_pred EEEEecCHHHHHhhcCeEEEEECCE
Q 046954 96 IVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 96 vi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
+|++||+++.+..+||+++++++|-
T Consensus 186 ii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 186 VGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEEEECchHHHHhhCcEEEEEecCC
Confidence 9999999999999999999999984
No 366
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.90 E-value=8.5e-24 Score=174.97 Aligned_cols=97 Identities=37% Similarity=0.574 Sum_probs=79.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++. ....++++.++++..++.+.. ....+..||||||||++||||++++|+++||||||
T Consensus 423 TI~eNI~~g~----~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T 498 (529)
T TIGR02868 423 TVRDNLRLGR----PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 498 (529)
T ss_pred cHHHHHhccC----CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 7899999863 123466788888888774211 11235679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
|+||+.+.+.+.+.+.++. .++|+|+|||++
T Consensus 499 SaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 499 EHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 9999999999999999874 389999999984
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=165.15 Aligned_cols=92 Identities=40% Similarity=0.565 Sum_probs=86.1
Q ss_pred CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 39 TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
.+-.|||||||||+|||+++.+|++++|||.||+||..+.+.+...|++..+ |+|.++|.|.++.+.. ||.|++|++
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~-adeiivl~~ 472 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIID-ADEIIVLDN 472 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccC-CceEEEeeC
Confidence 3457999999999999999999999999999999999999999999999863 9999999999999987 999999999
Q ss_pred CEEEEeeCccccccC
Q 046954 119 GEIVEVLKPDLLSEA 133 (146)
Q Consensus 119 G~i~~~g~~~~~~~~ 133 (146)
|+|++.|+.+++...
T Consensus 473 g~i~erg~h~~ll~~ 487 (497)
T COG5265 473 GRIVERGTHEELLAA 487 (497)
T ss_pred CEEEecCcHHHHHHc
Confidence 999999999987654
No 368
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=4.3e-23 Score=186.38 Aligned_cols=104 Identities=29% Similarity=0.411 Sum_probs=93.5
Q ss_pred HHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 25 LLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 25 ~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.+..+|+. ++ .++++.+|||||+|||+||+||+.+| +++||||||+|||+..+..+.++|+++++ .|.|||+|||
T Consensus 459 ~L~~vGL~-~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeH 536 (1809)
T PRK00635 459 ILIDLGLP-YLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEH 536 (1809)
T ss_pred HHHhcccc-CCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 45667885 34 58899999999999999999999999 89999999999999999999999999975 4999999999
Q ss_pred CHHHHHhhcCeEEEEE------CCEEEEeeCccccc
Q 046954 102 SIKQIQRIADVVCLLV------NGEIVEVLKPDLLS 131 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~ 131 (146)
|++ +.++||+|++|. +|++++.|+++++.
T Consensus 537 d~~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 537 DEQ-MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred cHH-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 998 568999999996 78999999988764
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=5.2e-23 Score=169.79 Aligned_cols=105 Identities=31% Similarity=0.371 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.++..++.-+|++. . +++.++||||||.||+||+||+.+|++|||||||++||..+...+.+.|+++ .| |+|+|
T Consensus 133 ~~~~~~L~gLg~~~-~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV 206 (530)
T COG0488 133 ARAEEALLGLGFPD-E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV 206 (530)
T ss_pred HHHHHHHhcCCCCc-c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE
Confidence 45667778888863 3 8899999999999999999999999999999999999999999999999875 27 99999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
|||-+++-++|++|+.++.|++. +.|.-+.+
T Consensus 207 SHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 207 SHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred eCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999999875 45555443
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=1.5e-22 Score=148.80 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t 95 (146)
+++.++++. . +..++++.+||||||||++||++++ .+|+++||||||++||+..+..+.+.|+++++ +.|
T Consensus 95 ~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~t 168 (197)
T cd03278 95 GDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQ 168 (197)
T ss_pred hhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCE
Confidence 456667766 2 3567889999999999999999997 46699999999999999999999999999853 789
Q ss_pred EEEEecCHHHHHhhcCeEEEEEC
Q 046954 96 IVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 96 vi~itH~~~~~~~~~d~v~~l~~ 118 (146)
||++||+++.+ .+||+++.+..
T Consensus 169 iIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 169 FIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred EEEEECCHHHH-hhcceEEEEEe
Confidence 99999999876 58999998864
No 371
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.2e-23 Score=166.01 Aligned_cols=92 Identities=38% Similarity=0.579 Sum_probs=86.3
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
.++-.|||||||||+|||+++..|.+++|||.||+||..+.+.+...+.+++. |+|.|+|.|.++.+.. ||.|++++
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~ 746 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVIS 746 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEe
Confidence 34568999999999999999999999999999999999999999999999985 8999999999999976 99999999
Q ss_pred CCEEEEeeCcccccc
Q 046954 118 NGEIVEVLKPDLLSE 132 (146)
Q Consensus 118 ~G~i~~~g~~~~~~~ 132 (146)
+|+|++.|..+++..
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999998754
No 372
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.7e-22 Score=148.66 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cC
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--HG 93 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--~g 93 (146)
..+.++++. . +..++++.+||+|||||++||+|+ +.+|+++||||||+|||+..+..+.+.|.++.++ .+
T Consensus 91 ~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 91 DMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 345566665 2 456888999999999999999999 5899999999999999999999999999998654 24
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 94 MTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 94 ~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
.+||++||+++.+..+ |+|.+|+.|+
T Consensus 167 ~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 167 QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EEEEEECCcccccccc-cceeEEEecC
Confidence 6899999999999886 9999998764
No 373
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-21 Score=144.88 Aligned_cols=108 Identities=27% Similarity=0.420 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
..++.+.++.++++..+++|++. .+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+.+.+++. .|.+++
T Consensus 120 ~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~l 198 (251)
T COG0396 120 IKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVL 198 (251)
T ss_pred HHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEE
Confidence 45677889999998778999987 6999999999999999999999999999999999999999999999975 599999
Q ss_pred EEecCHHHHHhhc--CeEEEEECCEEEEeeCcc
Q 046954 98 MVSHSIKQIQRIA--DVVCLLVNGEIVEVLKPD 128 (146)
Q Consensus 98 ~itH~~~~~~~~~--d~v~~l~~G~i~~~g~~~ 128 (146)
+|||.-..+ .+. |+|.+|-+|+|+..|.++
T Consensus 199 iITHy~rll-~~i~pD~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 199 IITHYQRLL-DYIKPDKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred EEecHHHHH-hhcCCCEEEEEECCEEEecCCHH
Confidence 999996544 555 999999999999999983
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=1.3e-21 Score=148.47 Aligned_cols=97 Identities=29% Similarity=0.318 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHcCCCh-------------------hhhcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCC
Q 046954 18 TENEVYKLLSLADLDS-------------------SFLSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALD 74 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD 74 (146)
..+++.++++.+++.. +..+.++.+||+|||||++||+||+ .+|+++|+||||++||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 3467888999999851 3456789999999999999999998 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
+..+..+.+.|+++. + |.++|+|||+ .++.+.||+++-+.
T Consensus 203 ~~~~~~~~~~l~~~~-~-g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 203 LSHTQNIGRMIKTHF-K-GSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHc-C-CCEEEEEECC-HHHHHhCCEEEEEE
Confidence 999999999999985 3 8999999999 45666799998775
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=5.6e-21 Score=143.91 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=70.5
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 36 LSKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
.+.++.+||||||||++||||++. +|+++|+||||++||+.+++.+.+.|.++++ +.++|++||+. ++.++||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~-~~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP-ELLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHhhCC
Confidence 356788999999999999999973 5899999999999999999999999999853 78899999986 5678999
Q ss_pred eEEEEE
Q 046954 112 VVCLLV 117 (146)
Q Consensus 112 ~v~~l~ 117 (146)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999885
No 376
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-21 Score=140.42 Aligned_cols=103 Identities=23% Similarity=0.373 Sum_probs=91.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|++||+.|...+++. .....+.++++.+||. .+.|.++++||.|||+||+|||-+++.++++||||||++||..+...
T Consensus 91 Ta~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~ 168 (209)
T COG4133 91 TALENLHFWQRFHGS-GNAATIWEALAQVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168 (209)
T ss_pred hHHHHHHHHHHHhCC-CchhhHHHHHHHcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHH
Confidence 789999998766553 2356688899999996 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
+-.++..-+. .|-.||.+||+.-.+
T Consensus 169 l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 169 LTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHHHHhc-CCCEEEEecCCccCC
Confidence 9999999876 488999999997554
No 377
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=4.1e-21 Score=158.62 Aligned_cols=106 Identities=30% Similarity=0.382 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
+..+...|..+++..+...+++..||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.++ .-|||+
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~ 491 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLL 491 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEE
Confidence 5678899999999866678899999999999999999999999999999999999999999999999876 349999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEe-eCccc
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEV-LKPDL 129 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 129 (146)
||||..++.++|++++.+++ ++... |+.++
T Consensus 492 VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~ 522 (530)
T COG0488 492 VSHDRYFLDRVATRIWLVED-KVEEFEGGYED 522 (530)
T ss_pred EeCCHHHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence 99999999999999999998 55443 44443
No 378
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.3e-21 Score=145.38 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCh-------------hh--------hcCCcCCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCCC
Q 046954 19 ENEVYKLLSLADLDS-------------SF--------LSKTGAEISVGQAQRVALARTLANE----PEVLLLDEPTSAL 73 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~-------------~~--------~~~~~~~LSgG~~qrv~ia~al~~~----p~llllDEPt~~L 73 (146)
...+.++++.+|+.. .+ .++++.+||+|||||++||++++.+ |+++|+||||++|
T Consensus 111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L 190 (247)
T cd03275 111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL 190 (247)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence 445677888888731 11 1234489999999999999999875 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
|+..+..+.+.|.++++ .|.++|+|||+.+. ..+||++++|..
T Consensus 191 D~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~-~~~~d~i~~~~~ 233 (247)
T cd03275 191 DNTNVGKVASYIREQAG-PNFQFIVISLKEEF-FSKADALVGVYR 233 (247)
T ss_pred CHHHHHHHHHHHHHhcc-CCcEEEEEECCHHH-HhhCCeEEEEEe
Confidence 99999999999999975 48999999999765 478999988864
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.86 E-value=2.8e-21 Score=142.72 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=74.3
Q ss_pred hcCCcCCCChhHHHH------HHHHHHHhcCCCEEEeeCCCCCCCHHHHH-HHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 36 LSKTGAEISVGQAQR------VALARTLANEPEVLLLDEPTSALDPISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 36 ~~~~~~~LSgG~~qr------v~ia~al~~~p~llllDEPt~~LD~~~~~-~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
.++++.+||+||+|| ++||||++.+|+++++||||++||+..+. .+.+.|.+++++.|.++|++||+++.+ .
T Consensus 109 ~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~ 187 (204)
T cd03240 109 LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV-D 187 (204)
T ss_pred HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-h
Confidence 467889999999996 78999999999999999999999999999 999999998754488999999999876 5
Q ss_pred hcCeEEEEECC
Q 046954 109 IADVVCLLVNG 119 (146)
Q Consensus 109 ~~d~v~~l~~G 119 (146)
.||+++.|++.
T Consensus 188 ~~d~i~~l~~~ 198 (204)
T cd03240 188 AADHIYRVEKD 198 (204)
T ss_pred hCCEEEEEeeC
Confidence 69999998643
No 380
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=3.9e-21 Score=170.38 Aligned_cols=117 Identities=29% Similarity=0.483 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 18 TENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
.++++=++|+..+|.+.. ...-+.++|-||||.+|+||||++++++|+|||+||+.|+.+-..+.+.|++
T Consensus 1241 sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1241 SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 355666777777663211 1123568999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 88 LKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 88 l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
--+ ++|||.|.|+++.+.. ||||+||++|++++.++|.++..+..+.
T Consensus 1321 ~F~--dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1321 EFK--DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred Hhc--CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCCcch
Confidence 653 8999999999999998 8999999999999999999987654443
No 381
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=1.2e-21 Score=144.20 Aligned_cols=126 Identities=27% Similarity=0.490 Sum_probs=112.9
Q ss_pred cHHHHHHHHHHcCCCh--hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954 18 TENEVYKLLSLADLDS--SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~--~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t 95 (146)
.+.++.+++.++|+.+ +....||.+|.-||-|+|.||.|++..|++||.||||+++++.++.+++.+|.++.+..|.|
T Consensus 132 rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt 211 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT 211 (330)
T ss_pred hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence 3567888999999963 34456899999999999999999999999999999999999999999999999998878999
Q ss_pred EEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc-cCCCHHHHHHhh
Q 046954 96 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMALRFLQ 143 (146)
Q Consensus 96 vi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~-~~~~~~~~~~~~ 143 (146)
|++++||+..+.++||++-||..|+-++.++.+++. .+.++++.+++.
T Consensus 212 ILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~ 260 (330)
T COG4170 212 ILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQALIR 260 (330)
T ss_pred EEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHHHHHH
Confidence 999999999999999999999999999999888865 456788877754
No 382
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=1.2e-21 Score=137.31 Aligned_cols=113 Identities=28% Similarity=0.417 Sum_probs=94.4
Q ss_pred ChHHHhhcCccc--cCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQL--RGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
+|.+|+.|.... ++. ..+..+..++++.|++ ...++.|.+||||||-||++-|+|+..|+.++||||||.||..-+
T Consensus 93 sVg~Nl~fAlp~~~KG~-aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR 170 (213)
T COG4136 93 SVGQNLLFALPATLKGN-ARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALR 170 (213)
T ss_pred ccccceEEecCcccccH-HHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHH
Confidence 577888886432 221 2344578899999996 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
.++.+.+..-.+..|.-+++||||...+. ...||+-+
T Consensus 171 ~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 171 DQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 99999987766778999999999998886 45566544
No 383
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=3.9e-21 Score=142.77 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=78.9
Q ss_pred HHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 23 YKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 23 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.++++.++++ +..++++.+||+|||||++||+|++. +|+++++||||+|||+.++..+.+.+.++++ +.++|+
T Consensus 109 ~~~~~~~~L~-~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~ii 185 (212)
T cd03274 109 GEVEQIAQMP-KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIV 185 (212)
T ss_pred CcEEEeeccc-cccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEE
Confidence 3445667775 45677889999999999999999974 5799999999999999999999999999853 679999
Q ss_pred EecCHHHHHhhcCeEEEEEC
Q 046954 99 VSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~ 118 (146)
+||+. ++.++||++++|..
T Consensus 186 vs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 186 ISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred EECcH-HHHHhCCEEEEEEe
Confidence 99995 67789999999964
No 384
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.8e-20 Score=151.46 Aligned_cols=102 Identities=30% Similarity=0.414 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 18 TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
.+++++.-|..+|++.++......+||||||-||+||.+...+|-+|+|||||+.||..+...+.+.|+.+ +-.||
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv 533 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVV 533 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEE
Confidence 46778899999999988888888999999999999999999999999999999999999999999998876 34999
Q ss_pred EEecCHHHHHhhcCeEEEEECCEEEE
Q 046954 98 MVSHSIKQIQRIADVVCLLVNGEIVE 123 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l~~G~i~~ 123 (146)
+||||.+++...|+.+|+.++|++..
T Consensus 534 ~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 534 LVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999864
No 385
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.4e-20 Score=134.29 Aligned_cols=99 Identities=27% Similarity=0.366 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
+.++..++.++++++.+..-.|.++||||||||.|||.++.+=++|+|||||++||..++.-+.++|.+-+ ..|.++|=
T Consensus 129 ~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvG 207 (235)
T COG4778 129 RAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVG 207 (235)
T ss_pred HHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEE
Confidence 45677899999998778889999999999999999999999999999999999999999999999999975 46999999
Q ss_pred EecCHHHHHhhcCeEEEEEC
Q 046954 99 VSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~ 118 (146)
|-||-+.=+..|||++-+..
T Consensus 208 IFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 208 IFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eeccHHHHHHHhhheeeccc
Confidence 99998888889999987753
No 386
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.4e-20 Score=139.85 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=74.7
Q ss_pred hhcCCcCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHhh
Q 046954 35 FLSKTGAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIKQIQRI 109 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g-~tvi~itH~~~~~~~~ 109 (146)
+.+..+.+||+||||++.+++++ +.+|+++|+||||++||+..+..+.+.+.+++++.| .++|++||++..+..+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 44667889999999999877654 589999999999999999999999999999875424 5899999999888888
Q ss_pred cC--eEEEEECCE
Q 046954 110 AD--VVCLLVNGE 120 (146)
Q Consensus 110 ~d--~v~~l~~G~ 120 (146)
+| +|++|++|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 87 689999886
No 387
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=1.8e-21 Score=139.53 Aligned_cols=111 Identities=29% Similarity=0.440 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc-----CC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN-----EP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKH 92 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~-----~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~ 92 (146)
..+..++..++++ +...+...+|||||.|||-+|...++ || +++|+|||.++||...+..+..+|.++++ .
T Consensus 104 ~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~ 181 (248)
T COG4138 104 ELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-Q 181 (248)
T ss_pred HHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-C
Confidence 4567788889996 57889999999999999999998764 45 59999999999999999999999999997 4
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 93 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 93 g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|.+|||++||++.-.+.+|++++|++|++...|..+++..
T Consensus 182 G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 9999999999999999999999999999999999988754
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=3.5e-20 Score=149.28 Aligned_cols=129 Identities=24% Similarity=0.447 Sum_probs=106.8
Q ss_pred ChHHHhhcCcccc------C-CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954 1 TVADNIRYGPQLR------G-KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS 71 (146)
Q Consensus 1 tv~eni~~~~~~~------~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~ 71 (146)
|+.||+.+..... + .. .......++.+.+++-..-...+..+||||.+||+-+||-|..+|++||+.+||.
T Consensus 353 sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTr 432 (501)
T COG3845 353 SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432 (501)
T ss_pred cHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCc
Confidence 5788887764321 1 01 1123466778888874222445678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 72 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 72 ~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|||..+.+.+.+.|.+.++ .|++|+++|-|++++..+||||.+|.+|+++...++++.
T Consensus 433 GLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 433 GLDVGAIEFIHERLLELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred cccHHHHHHHHHHHHHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999975 599999999999999999999999999999988887764
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=147.39 Aligned_cols=107 Identities=32% Similarity=0.356 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++..++.-+|...+..++.+.+||||+|.|+++||+|..+|++|||||||++||+.+..-+-+.|.++- ..++++++
T Consensus 200 k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~s 276 (614)
T KOG0927|consen 200 KAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVS 276 (614)
T ss_pred HHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEe
Confidence 445555555555567888999999999999999999999999999999999999999999999988762 22899999
Q ss_pred cCHHHHHhhcCeEEEEECCE-EEEeeCcccc
Q 046954 101 HSIKQIQRIADVVCLLVNGE-IVEVLKPDLL 130 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G~-i~~~g~~~~~ 130 (146)
|.-+++-.+|..|+.|.+++ +.+.|+.+.+
T Consensus 277 h~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 277 HSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred cchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 99999999999999999999 5567777655
No 390
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=6.6e-19 Score=127.63 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 43 ISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 43 LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
||+||+||++||++++ .+|+++++|||+++||+..+..+.+.+.++.+ .|.++|++||+++.+ ..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999999875 489999999998876 57999999875
No 391
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2.7e-20 Score=163.08 Aligned_cols=127 Identities=28% Similarity=0.366 Sum_probs=108.1
Q ss_pred ChHHHhhcCccccCCC-----ccHHHHHHHHHHcCCChhhhcCCcC----CCChhHHHHHHHHHHHhcCC-CEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLSKTGA----EISVGQAQRVALARTLANEP-EVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgG~~qrv~ia~al~~~p-~llllDEPt 70 (146)
||+|-+.|.+.++..+ ...+.++++++.++|+ ++.+.-++ .||..||+|+.||--|+.+| .+|+|||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 7999999987766321 1225688899999995 46665444 49999999999999999999 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEE-CCEEEEeeCccc
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLV-NGEIVEVLKPDL 129 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~~ 129 (146)
||||.++...+++.++++++ .|.||+++-|+++ .+.+..||+++|+ .|+.++.|+..+
T Consensus 959 SGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999997 5999999999987 4778899999997 568999998754
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.5e-19 Score=146.14 Aligned_cols=106 Identities=27% Similarity=0.370 Sum_probs=93.0
Q ss_pred HHHH-HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 21 EVYK-LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 21 ~~~~-~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++.. +|.-+|.+.+...++.++||||.|.|+++||||..+|++|||||||+.||..+...+.+.|..+ +.|+|+|
T Consensus 176 ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liV 251 (582)
T KOG0062|consen 176 EIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIV 251 (582)
T ss_pred HHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEE
Confidence 3444 7778888877788899999999999999999999999999999999999999999999988764 5799999
Q ss_pred ecCHHHHHhhcCeEEEEECCEE-EEeeCcccc
Q 046954 100 SHSIKQIQRIADVVCLLVNGEI-VEVLKPDLL 130 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~ 130 (146)
|||-++.-..|..|+.+++-++ .+.|+-+++
T Consensus 252 SHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 252 SHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred eccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999999988777 345666555
No 393
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.7e-18 Score=146.11 Aligned_cols=121 Identities=29% Similarity=0.426 Sum_probs=103.5
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
+....|..+||..-.+.++..+|||||.|||-+|.-|.... -++||||||+||=..-.+++++.|.++.. .|.|||
T Consensus 801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTVi 879 (935)
T COG0178 801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVI 879 (935)
T ss_pred HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 34456677888644467888999999999999999998777 89999999999999999999999999986 599999
Q ss_pred EEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHhh
Q 046954 98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 143 (146)
+|.|+++.+. .||.|+=| ..|+|++.|+|+++.....+++..|++
T Consensus 880 VIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk 930 (935)
T COG0178 880 VIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK 930 (935)
T ss_pred EEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence 9999998774 59999887 568999999999986555667777764
No 394
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1e-18 Score=134.38 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 42 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
+|||||+||+++|++++. +|+++++|||+++||+.....+.+.|.++.+ +.|+|++||++.. ..+||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~-~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV-AAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH-HHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999863 7899999999985 57899999998
Q ss_pred CCEE
Q 046954 118 NGEI 121 (146)
Q Consensus 118 ~G~i 121 (146)
+|..
T Consensus 247 ~~~~ 250 (276)
T cd03241 247 KEVE 250 (276)
T ss_pred EecC
Confidence 8754
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=8.9e-19 Score=140.45 Aligned_cols=93 Identities=28% Similarity=0.453 Sum_probs=86.4
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
++++-++|+ .+.++++.+|||||.|||+||.||..++++++||||+|.||.+.+-.+.+.|+++....++|.++|.||+
T Consensus 438 ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 438 EIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred hhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 456667774 6889999999999999999999999999999999999999999999999999999887889999999999
Q ss_pred HHHHhhcCeEEEEE
Q 046954 104 KQIQRIADVVCLLV 117 (146)
Q Consensus 104 ~~~~~~~d~v~~l~ 117 (146)
..+--++||+++++
T Consensus 517 ~~~dyvsDr~ivF~ 530 (591)
T COG1245 517 YMIDYVSDRLIVFE 530 (591)
T ss_pred ehhhhhhceEEEEe
Confidence 99999999999984
No 396
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=4.2e-19 Score=144.34 Aligned_cols=107 Identities=26% Similarity=0.366 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 18 TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
..+.+..++.++|+..+-.+.+..+||+|||.||.+|+.++..|.+|+|||||++||..+...+.+.|.++ .-+||
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv 560 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVV 560 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCcee
Confidence 34668889999999866677888999999999999999999999999999999999999999999998775 34999
Q ss_pred EEecCHHHHHhhcCeEEEEECCEEE-EeeCcc
Q 046954 98 MVSHSIKQIQRIADVVCLLVNGEIV-EVLKPD 128 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 128 (146)
++|||+..+.+++++|++..+|.+. ..|+..
T Consensus 561 ~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 561 LVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred eeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 9999999999999999999999874 345543
No 397
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=3.2e-18 Score=151.38 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=77.9
Q ss_pred hhcCCcCCCChhHHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 35 FLSKTGAEISVGQAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al~~----------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
..++++.+|||||++||+||+||+. +|++||+||||+|||+.+...+++.|.++.. .|++|++|||+++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 3456789999999999999999986 7999999999999999999999999999975 6999999999999
Q ss_pred HHHhhcCeEEEEECC
Q 046954 105 QIQRIADVVCLLVNG 119 (146)
Q Consensus 105 ~~~~~~d~v~~l~~G 119 (146)
+...++|+|.|++.|
T Consensus 1022 ~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1022 FRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHhhCCEEEEEECC
Confidence 999999999999765
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.75 E-value=5.8e-18 Score=135.81 Aligned_cols=95 Identities=28% Similarity=0.466 Sum_probs=87.9
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.+++.++++|. ...++.+.+|||||.||++||.|++++++++++|||+|-||...+-...+.++++++. +++||+|.|
T Consensus 194 ~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEH 271 (591)
T COG1245 194 FDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEH 271 (591)
T ss_pred HHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEec
Confidence 56778888995 6889999999999999999999999999999999999999999999999999999865 899999999
Q ss_pred CHHHHHhhcCeEEEEEC
Q 046954 102 SIKQIQRIADVVCLLVN 118 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l~~ 118 (146)
|+..+.-++|-|.++..
T Consensus 272 DLavLD~lsD~vhI~YG 288 (591)
T COG1245 272 DLAVLDYLSDFVHILYG 288 (591)
T ss_pred hHHHHHHhhheeEEEec
Confidence 99999999999988853
No 399
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.75 E-value=5.7e-18 Score=141.54 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCCChhHHHHHHHHHHHhcC----CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 41 AEISVGQAQRVALARTLANE----PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~----p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
..|||||+||++||++++.. |+++|||||++|||+.....+.+.|.++.+ +.+||+|||++..+. +||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEE
Confidence 47899999999999999985 699999999999999999999999999963 899999999998774 89999999
Q ss_pred ECCE
Q 046954 117 VNGE 120 (146)
Q Consensus 117 ~~G~ 120 (146)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9875
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=1.4e-17 Score=118.79 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=69.6
Q ss_pred CCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 41 AEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
.+||+||+||+++|++|+. +|+++|+|||++|+|+.....+.+.+.++.++ |.++|++||+++.+. .+|+++.|
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l 153 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHI 153 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEE
Confidence 4799999999999999987 78999999999999999999999999998765 899999999998775 58999998
Q ss_pred EC
Q 046954 117 VN 118 (146)
Q Consensus 117 ~~ 118 (146)
+.
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 64
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.73 E-value=1.7e-17 Score=122.07 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=76.2
Q ss_pred hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954 35 FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v 113 (146)
..+...+++|+||+|++.+++++ .+|+++++|||++|+|+..+..+. ..+.++.+ .|.++|++||+. .+..++|++
T Consensus 84 ~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~-~l~~~~d~~ 160 (200)
T cd03280 84 SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG-ELKAYAYKR 160 (200)
T ss_pred hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH-HHHHHHhcC
Confidence 34556789999999999999884 899999999999999999999996 46777754 589999999985 567899999
Q ss_pred EEEECCEEEEee
Q 046954 114 CLLVNGEIVEVL 125 (146)
Q Consensus 114 ~~l~~G~i~~~g 125 (146)
+.|++|++..++
T Consensus 161 ~~l~~g~l~~~~ 172 (200)
T cd03280 161 EGVENASMEFDP 172 (200)
T ss_pred CCeEEEEEEEec
Confidence 999999998763
No 402
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.72 E-value=1.5e-17 Score=138.47 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=70.7
Q ss_pred CCcCCCChhHHHHHHHHHHHh----------cCCCEEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 38 KTGAEISVGQAQRVALARTLA----------NEPEVLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~----------~~p~llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
.++.+|||||+||++||+||+ .+|+++|||||| ++||+.+...+.+.|.++ + |.+||+|||+....
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~~~~ 540 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKDHDP 540 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECchhch
Confidence 356899999999999999987 599999999998 789999999999999998 3 88999999997655
Q ss_pred HhhcCeEEEEEC-CEE
Q 046954 107 QRIADVVCLLVN-GEI 121 (146)
Q Consensus 107 ~~~~d~v~~l~~-G~i 121 (146)
..+|++++|.+ |+.
T Consensus 541 -~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 -QKFDRHLKMEKVGRF 555 (562)
T ss_pred -hhhhcEEEEEEECCe
Confidence 56899999986 554
No 403
>PRK10869 recombination and repair protein; Provisional
Probab=99.72 E-value=4.7e-17 Score=135.67 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=69.9
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 42 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
.|||||+||++||++++. +|+++|+|||++|||+.+...+.+.|+++++ +.+||+|||++..+ .+||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence 589999999999999997 6899999999999999999999999999963 79999999999866 7899999998
Q ss_pred CCE
Q 046954 118 NGE 120 (146)
Q Consensus 118 ~G~ 120 (146)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 864
No 404
>PRK03918 chromosome segregation protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=139.34 Aligned_cols=80 Identities=28% Similarity=0.363 Sum_probs=69.9
Q ss_pred cCCcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 37 SKTGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 37 ~~~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
+.++..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+.. .+.+||+|||+++ +..+|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~-~~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEE-LKDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHhC
Confidence 3567899999999 45566678899999999999999999999999999999865 4789999999987 45789
Q ss_pred CeEEEEEC
Q 046954 111 DVVCLLVN 118 (146)
Q Consensus 111 d~v~~l~~ 118 (146)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999983
No 405
>PRK01156 chromosome segregation protein; Provisional
Probab=99.68 E-value=5.2e-16 Score=135.59 Aligned_cols=79 Identities=29% Similarity=0.422 Sum_probs=68.9
Q ss_pred CCcCCCChhHHHHHHH------HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-C-CeEEEEecCHHHHHhh
Q 046954 38 KTGAEISVGQAQRVAL------ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-G-MTIVMVSHSIKQIQRI 109 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~i------a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~-g-~tvi~itH~~~~~~~~ 109 (146)
.++..|||||+++++| |++++.+|++++|||||++||+.....+.++|....+.. | .++|+|||++..+ .+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 3578999999999975 589999999999999999999999999999998654433 3 4899999999876 68
Q ss_pred cCeEEEEE
Q 046954 110 ADVVCLLV 117 (146)
Q Consensus 110 ~d~v~~l~ 117 (146)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 406
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.68 E-value=2.3e-16 Score=139.59 Aligned_cols=82 Identities=28% Similarity=0.257 Sum_probs=75.7
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhc--------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 36 LSKTGAEISVGQAQRVALARTLAN--------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~--------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
.++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+ .|++|++|||......
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHH
Confidence 347889999999999999999996 8999999999999999999999999999975 5999999999999999
Q ss_pred hhcCeEEEEEC
Q 046954 108 RIADVVCLLVN 118 (146)
Q Consensus 108 ~~~d~v~~l~~ 118 (146)
++..+|.|-+.
T Consensus 1022 ~i~~qi~V~k~ 1032 (1047)
T PRK10246 1022 RIPVQIKVKKI 1032 (1047)
T ss_pred hccceEEEEEC
Confidence 98888888875
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.5e-15 Score=128.46 Aligned_cols=116 Identities=28% Similarity=0.408 Sum_probs=98.8
Q ss_pred HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
|-.+||+.--++|...+|||||.||+.+|.-+-.+=- +++||||+.||=+....++++.|+++++ .|-|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH
Confidence 4456776333678889999999999999999977653 8999999999999999999999999975 699999999998
Q ss_pred HHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHhh
Q 046954 104 KQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 104 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 143 (146)
+.+. .||+|+=| +.|+|++.|+++++....++++..|+.
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLs 588 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLS 588 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhc
Confidence 7665 59999866 678999999999998766677777763
No 408
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.65 E-value=6.7e-16 Score=128.32 Aligned_cols=111 Identities=24% Similarity=0.336 Sum_probs=86.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK------TGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
|.+|-+.++.... ...++++.++|.++||+ ++.++ --..||+|||||+++||.++++|++++|||.|++||
T Consensus 471 tLre~l~YP~~~~--~~~d~~l~~vL~~vgL~-~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 471 TLREALCYPNAAP--DFSDAELVAVLHKVGLG-DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred cHHHHHhCCCCCC--CCChHHHHHHHHHcCcH-HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 3455555543221 13467788899999995 34332 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
+.+...+.+.+++-. .+.|||-|+|.. .+..+.++.+-+.
T Consensus 548 e~~e~~l~q~l~~~l--p~~tvISV~Hr~-tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEEL--PDATVISVGHRP-TLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhC--CCCEEEEeccch-hhHHHHhhheeec
Confidence 999999999998854 389999999996 4556777765554
No 409
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.63 E-value=5.8e-16 Score=137.16 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=69.9
Q ss_pred hcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 36 LSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
.+.++.+|||||+++++||++++ .+|+++||||||++||+.+...+.++|..+++ +.++|+|||++..+ .+||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhh
Confidence 45678899999999999999985 67799999999999999999999999999864 57899999999876 6799
Q ss_pred eEEEEE
Q 046954 112 VVCLLV 117 (146)
Q Consensus 112 ~v~~l~ 117 (146)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 987653
No 410
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.2e-15 Score=137.61 Aligned_cols=72 Identities=26% Similarity=0.451 Sum_probs=65.6
Q ss_pred CcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH----hcCCeEEEEecCHHHHHh
Q 046954 39 TGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK----KHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 39 ~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~----~~g~tvi~itH~~~~~~~ 108 (146)
.++.||||||| |++||+|++.+|++|+|||||+|||+.+...+.+.|..+.. ..|.+||+|||+++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 45789999999 99999999999999999999999999999999999988742 237899999999999998
Q ss_pred hc
Q 046954 109 IA 110 (146)
Q Consensus 109 ~~ 110 (146)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 86
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=7.3e-16 Score=115.28 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=76.0
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al--~~~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.++..+++.+ .....+|.|+++++.+++++ +.+|+++||||| |+++|+.+... ..+..+.++.|.++|+
T Consensus 75 ~il~~~~l~d----~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vli 148 (222)
T cd03285 75 CILARVGASD----SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLF 148 (222)
T ss_pred eeEeeecccc----chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEE
Confidence 3445555532 22567999999999999999 899999999999 89999988853 3345554334899999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
+||+ .++.++||++..+++|++...++
T Consensus 149 sTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 149 ATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred Eech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9996 77889999999999999977654
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=2.3e-15 Score=115.51 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=66.4
Q ss_pred cCCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 40 GAEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
...+|+||+|+++||++|+ .+|+++|+||||++||+..+..+.+.+.++ + .+++++|+...+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence 3458999999999999986 799999999999999999999999998764 3 4677777777787877
Q ss_pred ---CeEEEEECCEE
Q 046954 111 ---DVVCLLVNGEI 121 (146)
Q Consensus 111 ---d~v~~l~~G~i 121 (146)
.+++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.7e-15 Score=120.66 Aligned_cols=99 Identities=31% Similarity=0.349 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+.+...|-.+||..+--.-....|||||+-||++|-.-+..|++|||||||++||.++...+.+.|.++ +-.||+
T Consensus 681 yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~ 756 (807)
T KOG0066|consen 681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIM 756 (807)
T ss_pred hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEE
Confidence 3445666777777543223356799999999999999999999999999999999999999999998876 448999
Q ss_pred EecCHHHHHhhcCeEEEEECCEE
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i 121 (146)
||||-..+.+..=..||+++-.|
T Consensus 757 VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 757 VSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred EecccceeeecCceEEEEccCCh
Confidence 99998887775556777766544
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.2e-16 Score=124.71 Aligned_cols=100 Identities=28% Similarity=0.375 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
+.++..+|.-+|.+....+++...+|||.|.||++||||...|-+|+|||||+.||..+...+-+.|.-+. +|.++
T Consensus 389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLI 464 (807)
T KOG0066|consen 389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLI 464 (807)
T ss_pred hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEE
Confidence 45677788888888777888889999999999999999999999999999999999999999988888763 59999
Q ss_pred EecCHHHHHhhcCeEEEEECCEEE
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i~ 122 (146)
||||-.++...|..|+.|++-++-
T Consensus 465 VSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 465 VSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred EecccchHHHHHHHHhhhhhhhhh
Confidence 999999999999999999988874
No 415
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.57 E-value=5e-15 Score=102.09 Aligned_cols=51 Identities=39% Similarity=0.642 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCChhhhcCCc----CCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954 20 NEVYKLLSLADLDSSFLSKTG----AEISVGQAQRVALARTLANEPEVLLLDEPTS 71 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~----~~LSgG~~qrv~ia~al~~~p~llllDEPt~ 71 (146)
.++..+++.+++. ++.++.+ .+||+|||||++||+||+.+|+++|||||||
T Consensus 83 ~~~~~~l~~l~~~-~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 83 ERIEEVLKKLGLE-DLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHTTHG-GGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccc-cccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4577788888874 3444444 9999999999999999999999999999997
No 416
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.56 E-value=9.1e-15 Score=129.88 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred cCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954 37 SKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~ 112 (146)
..++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.+ +.++|+|||+...+ .+||+
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-Hhcce
Confidence 45678999999999999999985 7899999999999999999999999999853 57899999998655 78999
Q ss_pred EEEEEC
Q 046954 113 VCLLVN 118 (146)
Q Consensus 113 v~~l~~ 118 (146)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987754
No 417
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.54 E-value=1.5e-14 Score=106.31 Aligned_cols=103 Identities=28% Similarity=0.403 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-+.+.+.++++ ...+-+.+|-|||+||.|++.|++.=++|+|||-|-.||.-++..+++.+++-+.+.|+||++.
T Consensus 128 ~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYA 204 (291)
T KOG2355|consen 128 ERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYA 204 (291)
T ss_pred hHhhhhhhheecc---ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEE
Confidence 4455666666664 2334578999999999999999999999999999999999999999999999998889999999
Q ss_pred ecCHHHHHhhcCeEEEEECCEEEEee
Q 046954 100 SHSIKQIQRIADVVCLLVNGEIVEVL 125 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l~~G~i~~~g 125 (146)
||-.+-.+.+...++.++.|+++-.-
T Consensus 205 THIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 205 THIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred eeeccchhhcchhEEEecCCeeeecc
Confidence 99999999999999999999998643
No 418
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=7.6e-15 Score=129.34 Aligned_cols=130 Identities=23% Similarity=0.292 Sum_probs=107.2
Q ss_pred ChHHHhhcCccccCC-----CccH-H----HHHHHHHHcCCChh----hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEe
Q 046954 1 TVADNIRYGPQLRGK-----KLTE-N----EVYKLLSLADLDSS----FLSKTGAEISVGQAQRVALARTLANEPEVLLL 66 (146)
Q Consensus 1 tv~eni~~~~~~~~~-----~~~~-~----~~~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 66 (146)
||+|.+.|.++..+. ...+ + ..+.+++.+||+.. .-|...+..|||||+||.+|-+++.+|+++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 678888887765442 1112 2 24467899999521 22344578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 67 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 67 DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
||+|.|||..+.-++.+.++++++..+.|++++-++.. ++..+.|.|++|.+|+++..|+.++.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHH
Confidence 99999999999999999999999877889999888865 58889999999999999999998764
No 419
>PRK02224 chromosome segregation protein; Provisional
Probab=99.53 E-value=3.8e-14 Score=123.69 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=68.5
Q ss_pred CcCCCChhHHH------HHHHHHHHhcC-----C-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEecCHHH
Q 046954 39 TGAEISVGQAQ------RVALARTLANE-----P-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM-TIVMVSHSIKQ 105 (146)
Q Consensus 39 ~~~~LSgG~~q------rv~ia~al~~~-----p-~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~-tvi~itH~~~~ 105 (146)
++..||||||+ |++++++++.+ | +++|+||||++||+.....+.++|..+.. .|. +||+|||++..
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence 36799999999 89999998864 3 67999999999999999999999999874 364 89999999988
Q ss_pred HHhhcCeEEEEECC
Q 046954 106 IQRIADVVCLLVNG 119 (146)
Q Consensus 106 ~~~~~d~v~~l~~G 119 (146)
+. .||+++.+...
T Consensus 857 ~~-~ad~~~~~~~~ 869 (880)
T PRK02224 857 VG-AADDLVRVEKD 869 (880)
T ss_pred HH-hcCeeEEeecC
Confidence 75 69999999654
No 420
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.8e-14 Score=114.40 Aligned_cols=106 Identities=30% Similarity=0.397 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHcCCCh--hhhcCC--cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046954 18 TENEVYKLLSLADLDS--SFLSKT--GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 18 ~~~~~~~~l~~~~l~~--~~~~~~--~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
..+.+..+++++.+.. .+.|.. +-.||.|||+|+++.-|++-+-+++++||=.+.-||.-++.+.+.+.-+.++.|
T Consensus 420 s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG 499 (546)
T COG4615 420 SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG 499 (546)
T ss_pred ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC
Confidence 4567888888877642 122332 347999999999999999999999999999999999999999999888777889
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEECCEEEEe
Q 046954 94 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 94 ~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~ 124 (146)
+||+.|||| +.-...|||++.+++|++++.
T Consensus 500 KTI~aIsHD-d~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 500 KTIFAISHD-DHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred CeEEEEecC-chhhhhHHHHHHHhcCceeec
Confidence 999999999 556678999999999999875
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.51 E-value=7.2e-14 Score=111.33 Aligned_cols=78 Identities=26% Similarity=0.353 Sum_probs=68.6
Q ss_pred cCCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 40 GAEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
...+|.||+|++.+|++|+ .+|+++|||||+++||+..+..+.+.+.++ +..++++||+.+.+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhh
Confidence 3589999999999999996 699999999999999999999999988653 458999999988776664
Q ss_pred --CeEEEEECCEE
Q 046954 111 --DVVCLLVNGEI 121 (146)
Q Consensus 111 --d~v~~l~~G~i 121 (146)
++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999987
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.50 E-value=9.7e-14 Score=102.15 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
...+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+.. ++..+. +.+.++|++||+.+.+. .++++..+
T Consensus 87 ~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l 163 (202)
T cd03243 87 DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFHELAD-LPEQVPGV 163 (202)
T ss_pred CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChHHHHH-HhhcCCCe
Confidence 345677777776 566678889999999999999999999888765 456565 45899999999987665 68899999
Q ss_pred ECCEEEEeeCccc
Q 046954 117 VNGEIVEVLKPDL 129 (146)
Q Consensus 117 ~~G~i~~~g~~~~ 129 (146)
..|++...++..+
T Consensus 164 ~~~~~~~~~~~~~ 176 (202)
T cd03243 164 KNLHMEELITTGG 176 (202)
T ss_pred EEEEEEEEecCCe
Confidence 9999988776543
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.44 E-value=5.8e-13 Score=96.87 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=64.7
Q ss_pred HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHH
Q 046954 26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+..++.. +..++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||+++
T Consensus 46 l~~~~~~-d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 46 FTRIGAS-DSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEEeCCC-CchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 3445553 34556677899988874333332 3499999999999999999887765 5566665424899999999995
Q ss_pred HHHhhcCeEEEEECCEE
Q 046954 105 QIQRIADVVCLLVNGEI 121 (146)
Q Consensus 105 ~~~~~~d~v~~l~~G~i 121 (146)
+.+++++---++++++
T Consensus 124 -l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 124 -LTKLADEHPGVRNLHM 139 (185)
T ss_pred -HHHHhhcCccceEEEE
Confidence 6677875333444443
No 424
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=107.26 Aligned_cols=112 Identities=24% Similarity=0.347 Sum_probs=83.7
Q ss_pred ChHHHhhcCccc---cCCCccHHHHHHHHHHcCCChhhhcC-----------CcCCCChhHHHHHHHHHHHhcCCCEEEe
Q 046954 1 TVADNIRYGPQL---RGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQRVALARTLANEPEVLLL 66 (146)
Q Consensus 1 tv~eni~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~ia~al~~~p~llll 66 (146)
|.+|.+.++... .....+++++...|+.+++. ++..+ -...||+||+||+++||.+.++|++-+|
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~-hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiL 594 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLG-HLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAIL 594 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHHHHHHhhhh-hHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEe
Confidence 456666665321 11223455677666666553 22222 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 67 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 67 DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
||-||++|......+.+.+++ .|+|.|-|+|.-. ..++-|.++-|..
T Consensus 595 DE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS-L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 595 DECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS-LWKFHDYVLRMDG 641 (659)
T ss_pred echhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH-HHhhhhEEEEecC
Confidence 999999999999888887654 4999999999976 5567899999964
No 425
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=103.71 Aligned_cols=102 Identities=27% Similarity=0.478 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCChh-hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 21 EVYKLLSLADLDSS-FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 21 ~~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
.+.+++.+.|+.+. +..+++++||-|||.|+.||++++..|.+++.||-.|.||+.+...+..-|.+++++.|.|++++
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35678888898643 34566789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHhh-cCeEEEEECCEEE
Q 046954 100 SHSIKQIQRI-ADVVCLLVNGEIV 122 (146)
Q Consensus 100 tH~~~~~~~~-~d~v~~l~~G~i~ 122 (146)
||+.+..-.+ -|.++.+.-|...
T Consensus 565 ThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 565 THRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred ecCHHHHhccCCceeEEeeccccc
Confidence 9999998888 5999988777653
No 426
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=4.7e-12 Score=101.06 Aligned_cols=63 Identities=32% Similarity=0.451 Sum_probs=57.5
Q ss_pred CCCChhHHHHHHHHHHHhc---------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 41 AEISVGQAQRVALARTLAN---------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~---------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
..+|.||+|++.||.+|+. +|+++|||||+++||+..+..+.+.|.+. |.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 3689999999999999999 99999999999999999999999998753 679999999987654
No 427
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.3e-11 Score=108.40 Aligned_cols=80 Identities=29% Similarity=0.365 Sum_probs=68.8
Q ss_pred CCcCCCChhHHHHHHHHHHHh------cC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 38 KTGAEISVGQAQRVALARTLA------NE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~------~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
+++.+|||||+=.++||.+|+ .+ -++++|||||..||+.....+.++|..+... +.+|++|||+.++. ..
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~-e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELK-ER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHH-Hh
Confidence 578899999999888887764 45 6999999999999999999999999999764 89999999997655 56
Q ss_pred cCeEEEEECC
Q 046954 110 ADVVCLLVNG 119 (146)
Q Consensus 110 ~d~v~~l~~G 119 (146)
+|.++.++..
T Consensus 889 ~~~~i~V~k~ 898 (908)
T COG0419 889 ADVRIRVKKD 898 (908)
T ss_pred CCeEEEEEec
Confidence 8888777643
No 428
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.27 E-value=3.3e-11 Score=89.42 Aligned_cols=88 Identities=27% Similarity=0.337 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~ 94 (146)
...+...+....+. +..||||||..++||.-|+ .++++++||||.++||...+..+.++|.++.+ +.
T Consensus 120 ~~~~~~~l~~~~i~-------~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~ 190 (220)
T PF02463_consen 120 LKDLEELLPEVGIS-------PEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QS 190 (220)
T ss_dssp HHHHHHHHHCTTTT-------TTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TS
T ss_pred cccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 34455666665553 2289999999999997663 56789999999999999999999999999853 68
Q ss_pred eEEEEecCHHHHHhhcCeEEEE
Q 046954 95 TIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 95 tvi~itH~~~~~~~~~d~v~~l 116 (146)
-+|++||+.... ..+|+.+.+
T Consensus 191 Q~ii~Th~~~~~-~~a~~~~~v 211 (220)
T PF02463_consen 191 QFIITTHNPEMF-EDADKLIGV 211 (220)
T ss_dssp EEEEE-S-HHHH-TT-SEEEEE
T ss_pred cccccccccccc-ccccccccc
Confidence 999999997655 568886655
No 429
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=1.9e-11 Score=90.45 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=59.1
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
..+..+.+|+|++|+ ..+.+++.+|+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+.+...++
T Consensus 85 ~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 85 MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence 345567899999976 455668899999999999999999776665 455666664 59999999999998876653
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.27 E-value=1e-11 Score=99.68 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=84.3
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
...+++.+.|. ...++-+.+||||+-||.+||++.++..+++++|||.+-||...+-.-...|+.+.. .+.=||+|.|
T Consensus 194 ~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEH 271 (592)
T KOG0063|consen 194 KEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEH 271 (592)
T ss_pred HHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEe
Confidence 34556666664 467888899999999999999999999999999999999999999999999999975 4889999999
Q ss_pred CHHHHHhhcCeEEEEEC
Q 046954 102 SIKQIQRIADVVCLLVN 118 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l~~ 118 (146)
|++...-++|-+.+|..
T Consensus 272 DLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 272 DLSVLDYLSDFICCLYG 288 (592)
T ss_pred echHHHhhhcceeEEec
Confidence 99999999999998854
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.26 E-value=1.2e-11 Score=99.27 Aligned_cols=93 Identities=25% Similarity=0.343 Sum_probs=80.1
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
..++-+.++ +..++.+..||||++|||++|.+|-..+++++.|||.+-||.+.+..-...++++-=..++|-.+|.||+
T Consensus 439 dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdf 517 (592)
T KOG0063|consen 439 DVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDF 517 (592)
T ss_pred hhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHH
Confidence 344555553 5677888999999999999999999999999999999999999999999998886434578999999999
Q ss_pred HHHHhhcCeEEEEE
Q 046954 104 KQIQRIADVVCLLV 117 (146)
Q Consensus 104 ~~~~~~~d~v~~l~ 117 (146)
-.+--++|||++.+
T Consensus 518 ImaTYladrvivf~ 531 (592)
T KOG0063|consen 518 IMATYLADRVIVFE 531 (592)
T ss_pred HHHHhhcceeEEEe
Confidence 88888999999874
No 432
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.22 E-value=5.5e-11 Score=85.74 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=67.9
Q ss_pred hcCCcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-
Q 046954 36 LSKTGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ- 105 (146)
Q Consensus 36 ~~~~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD---~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~- 105 (146)
.+..+..+|+|++| ......+...+|+++++|||++.+| ......+.+.+..+++ .|.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~ 143 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLE 143 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCC
Confidence 44567789999998 5555555678999999999999999 8888888889988875 59999999998765
Q ss_pred --------HHhhcCeEEEEE
Q 046954 106 --------IQRIADVVCLLV 117 (146)
Q Consensus 106 --------~~~~~d~v~~l~ 117 (146)
+..+||.|+.|+
T Consensus 144 ~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 144 GTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcccCcCceeEeeeEEEEEE
Confidence 678899999887
No 433
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.22 E-value=2.4e-11 Score=110.16 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=56.2
Q ss_pred hhcCCcCCCChhHHHHHH----HHHH--------HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 35 FLSKTGAEISVGQAQRVA----LART--------LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~----ia~a--------l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
+.++.++.|||||||+++ +|++ +..+|++++|||||+|+|+.+...++++|.++ |.++|++||.
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSER 1315 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccc
Confidence 344457899999999996 5655 55899999999999999999999999999876 7899999998
Q ss_pred H
Q 046954 103 I 103 (146)
Q Consensus 103 ~ 103 (146)
+
T Consensus 1316 ~ 1316 (1353)
T TIGR02680 1316 E 1316 (1353)
T ss_pred h
Confidence 5
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.20 E-value=4.6e-11 Score=103.34 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
...+++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ .|.++|++||+.+.....+++..+.
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhcCCCeE
Confidence 34678999999999999998 8999999999999999999998865 5666654 5899999999998887777766554
Q ss_pred ECCEEEE
Q 046954 117 VNGEIVE 123 (146)
Q Consensus 117 ~~G~i~~ 123 (146)
++.+..
T Consensus 464 -~~~~~~ 469 (782)
T PRK00409 464 -NASVEF 469 (782)
T ss_pred -EEEEEE
Confidence 555544
No 435
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.19 E-value=4.9e-11 Score=88.90 Aligned_cols=87 Identities=23% Similarity=0.252 Sum_probs=63.2
Q ss_pred CCCChhHHHH----HHHHHHH--hcCCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 41 AEISVGQAQR----VALARTL--ANEPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 41 ~~LSgG~~qr----v~ia~al--~~~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
.++|.|+.+. ..+++++ +.+|+++||||| |+++|.... ...++..+.+..+.++|++||+. ++..++|
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~ 160 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEG 160 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhh
Confidence 4678887664 3466665 469999999999 888887552 23444545433388999999996 5567899
Q ss_pred eEEEEECCEEEEeeCcccc
Q 046954 112 VVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 112 ~v~~l~~G~i~~~g~~~~~ 130 (146)
++..+.+|++...++.+++
T Consensus 161 ~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 161 KLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred cCCCeEEEEEEEEeeCCeE
Confidence 9888889998777666654
No 436
>PRK14079 recF recombination protein F; Provisional
Probab=99.19 E-value=6.8e-11 Score=93.94 Aligned_cols=76 Identities=30% Similarity=0.292 Sum_probs=62.3
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 41 AEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
..+|+||++++.+|+.|+ .+|+++|||||+++||+..+..+.+.|... ..++|.+|+ ....++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~----~~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE----APPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC----CCCCCc
Confidence 368999999999999999 899999999999999999999999887543 224444343 446799
Q ss_pred eEEEEECCEEEEe
Q 046954 112 VVCLLVNGEIVEV 124 (146)
Q Consensus 112 ~v~~l~~G~i~~~ 124 (146)
+++.+++|++.-+
T Consensus 334 ~~~~~~~~~~~~~ 346 (349)
T PRK14079 334 LTLRIEAGVFTPE 346 (349)
T ss_pred eEEEEeccEecCC
Confidence 9999999987543
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.16 E-value=3.2e-10 Score=83.48 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHhh--cCeEEE
Q 046954 46 GQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRI--ADVVCL 115 (146)
Q Consensus 46 G~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~~~~~~--~d~v~~ 115 (146)
.+.+|+.-+...+. +|+++|+|||++|+|+.....+. .++.++.+ .|.++|++||+++.+... .++|-.
T Consensus 89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~~~~~~v~~ 162 (199)
T cd03283 89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence 34455555555555 99999999999999999998775 46788764 589999999999988765 444544
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.12 E-value=2.5e-10 Score=83.89 Aligned_cols=67 Identities=24% Similarity=0.434 Sum_probs=55.3
Q ss_pred CcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 39 TGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
+...+|.|++|.+.++.++...+ .++++|||-++|.|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 45678999999999998888777 89999999999999999999999988765 589999999997643
No 439
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.07 E-value=1.3e-10 Score=95.36 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=62.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
..||||+|||+++||.+.++|++.+|||.|++..+.....+.+..++ .|.+.|-|||.+... ++-..++-. +|+
T Consensus 611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrpslw-k~h~~ll~~-dg~ 684 (728)
T KOG0064|consen 611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPSLW-KYHTHLLEF-DGE 684 (728)
T ss_pred hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCccHH-HHHHHHHhc-cCC
Confidence 46999999999999999999999999999999999888888877554 599999999998755 555655554 443
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=9.2e-10 Score=81.89 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHh-c-CCeEEEEecCHHHHHhhc
Q 046954 45 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKK-H-GMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 45 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~-~-g~tvi~itH~~~~~~~~~ 110 (146)
.-+-||++++++++.+|+++|+|||++|+|+.....+ ..+++++.+. . +.++|++||+.+.+....
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 3457999999999999999999999999999765444 5688888653 1 358999999999887653
No 441
>PRK13695 putative NTPase; Provisional
Probab=98.96 E-value=1.8e-09 Score=77.57 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
++...+||+++-++.+++..+.+|+++++||| +.++|+. +.+.+.++. +.|.++|+++|+ ..+..++|++..
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~ 147 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKS 147 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhc
Confidence 34567999999999999999999999999995 4445443 456666655 358999999999 466678999999
Q ss_pred EECCEEEEe
Q 046954 116 LVNGEIVEV 124 (146)
Q Consensus 116 l~~G~i~~~ 124 (146)
+.+|+|.+.
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999998654
No 442
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.94 E-value=2.8e-09 Score=92.23 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=58.0
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
...+++|+|+++++.|++++ .+|.++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+..
T Consensus 381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 34678999999999998876 78999999999999999999999 466777754 699999999998754
No 443
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.90 E-value=3.5e-09 Score=68.58 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=39.0
Q ss_pred cCCcCCCChhHH-HHHHHHHHH------hc------CCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 37 SKTGAEISVGQA-QRVALARTL------AN------EPEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 37 ~~~~~~LSgG~~-qrv~ia~al------~~------~p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
.+..+.+||||+ ..+.+|.++ .. .|++++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456789999999 444444433 22 3799999999999999999999999864
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.81 E-value=2.4e-08 Score=76.87 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--H-----------Hhh
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--I-----------QRI 109 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--~-----------~~~ 109 (146)
|.+=.|.......+.+++|+++++|||++ .+.+..++..+. .|+++|++||+.+. + ..+
T Consensus 177 ~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEA 248 (270)
T ss_pred cccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCc
Confidence 33333444445555568999999999974 344555555553 49999999997655 4 367
Q ss_pred cCeEEEEECCEEEEeeCccccc
Q 046954 110 ADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 110 ~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
++|+++|++|+ ..|+++++.
T Consensus 249 ~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 249 FERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred eEEEEEEecCC--CCCceeecc
Confidence 89999999887 667776654
No 445
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.80 E-value=7.8e-09 Score=76.40 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=44.8
Q ss_pred CCCChh--HHHHHHHHHHHhcCCCEEEeeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 046954 41 AEISVG--QAQRVALARTLANEPEVLLLDEPT-----SALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 41 ~~LSgG--~~qrv~ia~al~~~p~llllDEPt-----~~LD~~~~~~~~~~l~~l~~ 90 (146)
+..||+ +++++.||++++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 344444 899999999999999999999999 99999999999999999863
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.80 E-value=1.4e-08 Score=88.58 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=61.1
Q ss_pred hcCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH---------hhcCeEEEEECCEEEEeeCc
Q 046954 58 ANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ---------RIADVVCLLVNGEIVEVLKP 127 (146)
Q Consensus 58 ~~~p~llllDEPt~~L-D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~---------~~~d~v~~l~~G~i~~~g~~ 127 (146)
..+|+++++|||+.+| |+.....+.+.++.+++ .|.+++++||+++.+. ..|+++++|.+|++...++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 79999999999999875 5899999999999886 57999999999998665543
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=1.5e-07 Score=70.38 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 48 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 48 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
-+++.-....+.+|+++|+|||++|+++.....+... +..+.+..+.++|++||+++.+..++
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 4444444444689999999999999999999999888 66666434899999999999888775
No 448
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.56 E-value=2.9e-08 Score=75.52 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=63.8
Q ss_pred cCCCChhH--------HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 40 GAEISVGQ--------AQRVALARTLANEPEVLLLDEPTSALDPISTQN-IEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 40 ~~~LSgG~--------~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~-~~~~l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
+..+|||+ +||+++||++..++++.+| ||+.+|..+... +. +..+.. .+.|.|+++|++.... .+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la~~~-~~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLAERR-IF 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHhhCC-CC
Confidence 45679999 9999999999999999999 999999655543 44 455542 4789999999998775 58
Q ss_pred CeEEEEECCEEE
Q 046954 111 DVVCLLVNGEIV 122 (146)
Q Consensus 111 d~v~~l~~G~i~ 122 (146)
|.|.+|+.|++.
T Consensus 201 paI~vl~s~sr~ 212 (249)
T cd01128 201 PAIDILKSGTRK 212 (249)
T ss_pred CeEEEcCCCCcc
Confidence 999999999974
No 449
>PF13175 AAA_15: AAA ATPase domain
Probab=98.49 E-value=4.6e-07 Score=72.50 Aligned_cols=68 Identities=24% Similarity=0.381 Sum_probs=57.7
Q ss_pred CCcCCCChhHHHHHHHHHHHh------cC-CC---EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 38 KTGAEISVGQAQRVALARTLA------NE-PE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~------~~-p~---llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
-+..++|.|.++.+.|+..+. .+ +. ++++|||-+.|-|..++.+.+.|.++....+..||++||.+..
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 356789999999888877653 12 22 9999999999999999999999999987568999999999864
No 450
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.44 E-value=1.3e-06 Score=65.41 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 47 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 47 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
+-+++.-+..-+.+|.++|+|||.+|.|+.....+ ..++..+.+..+.++|++||+.+...
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 34444444445678999999999999997777765 56677776534889999999988754
No 451
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.44 E-value=4.2e-07 Score=82.09 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=63.4
Q ss_pred CcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 39 TGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
....||||||-.++||..++ ...++++|||--++||..+...+..+|++.. .+.-.|+|||...... .||+++
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~-~ad~l~ 1139 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTME-AADRLV 1139 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHH-HHHHHe
Confidence 45679999999999999875 5668999999999999999999999999986 3899999999976654 578854
No 452
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=2.3e-07 Score=80.42 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=64.9
Q ss_pred cCCCChhHHHHHHHHHHHh---cCC-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 40 GAEISVGQAQRVALARTLA---NEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~---~~p-~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
..+||||||--||||..++ ++| +++|+||.-++||+..+..+..+|+++++ ..-+|++|..++.+ ..||.++-
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~--~aQFI~TTFRpEll-~vAdKfyg 1171 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD--SAQFITTTFRPELL-SVADKFYG 1171 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh--ccceEeecccHHHH-HHHHhhhc
Confidence 3489999999999999886 455 79999999999999999999999999986 47899999998766 57999775
Q ss_pred EE
Q 046954 116 LV 117 (146)
Q Consensus 116 l~ 117 (146)
..
T Consensus 1172 V~ 1173 (1200)
T KOG0964|consen 1172 VK 1173 (1200)
T ss_pred ee
Confidence 54
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.38 E-value=8.1e-07 Score=66.81 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------
Q 046954 42 EISVGQAQRVALARTLA----NEPEVLLLDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-------- 105 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~----~~p~llllDEPt~~L----D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-------- 105 (146)
.+|+++.++-.+.+.+- .+|+++++||||+++ |+...+.+.+.++.+++ .|.|+++ ||+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~~~ 172 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVLTI 172 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eeccccccccccee
Confidence 46777666555555443 379999999999999 88888999999999875 4776655 555443
Q ss_pred HHhhcCeEEEEE
Q 046954 106 IQRIADVVCLLV 117 (146)
Q Consensus 106 ~~~~~d~v~~l~ 117 (146)
+..+||-|+.|+
T Consensus 173 ~~~~~DgvI~L~ 184 (230)
T PRK08533 173 LRTAATMLIRLE 184 (230)
T ss_pred EEEeeeEEEEEE
Confidence 234556677665
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.37 E-value=2.1e-06 Score=64.37 Aligned_cols=76 Identities=21% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHHHHHhc--CCCEEEeeCCCCC---CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-------HHhh
Q 046954 42 EISVGQAQRVALARTLAN--EPEVLLLDEPTSA---LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-------IQRI 109 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~--~p~llllDEPt~~---LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-------~~~~ 109 (146)
..|.++++.+..+..++. +|+++++||||+. .|......+...++.+++ .|.|+++++|+... +..+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhh
Confidence 357788999999999887 9999999999964 455555566666766664 58999999997654 5566
Q ss_pred cCeEEEEEC
Q 046954 110 ADVVCLLVN 118 (146)
Q Consensus 110 ~d~v~~l~~ 118 (146)
+|-++.|+.
T Consensus 179 ~DgvI~L~~ 187 (234)
T PRK06067 179 CDVYLKLRA 187 (234)
T ss_pred eEEEEEEEe
Confidence 777777763
No 455
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.37 E-value=6.8e-07 Score=78.51 Aligned_cols=55 Identities=27% Similarity=0.457 Sum_probs=50.1
Q ss_pred HHHHHhcCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 53 LARTLANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 53 ia~al~~~p~llllDEPt~~L-D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhh
Confidence 677888999999999999999 79999999999999875 58999999999999876
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.34 E-value=7.4e-07 Score=67.12 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHH----------------HHhcCCCEEEeeCCCCC------CCHHH
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR----------------TLANEPEVLLLDEPTSA------LDPIS 77 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~----------------al~~~p~llllDEPt~~------LD~~~ 77 (146)
+++..+...+++. +..++.. ..+|+.|++.+++ +...+|+++++| |+++ +|+..
T Consensus 58 ~Rl~~i~~~~~~~-~~~~rl~--~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~ 133 (239)
T cd01125 58 RRLEAILQHLEPD-DAGDRLF--IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGA 133 (239)
T ss_pred HHHHHHHhhcCCc-CcccceE--EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHH
Confidence 3455566656543 2223322 2356666666554 446899999999 7764 79999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
...+++.|.+++++.|++|++++|..-
T Consensus 134 ~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 134 MDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 999999999998877999999999863
No 457
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.29 E-value=1.3e-06 Score=74.63 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=48.8
Q ss_pred CcCCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 39 TGAEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
++..|||||+|-++||..++. +.++ ++||||+.||+..+..+.. .+..+ +.-||+.|||-+.-..
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~~~ 619 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVDEK 619 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhCHH
Confidence 457899999999877765432 3555 5699999999999999875 54432 5689999999665443
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.26 E-value=9.7e-06 Score=59.33 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=64.5
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
+.....|.||-=.--+.+.+ ++.-++|||||-++|.|.-+-.++..|.++++. |.-+|+.||.+-...-=.-+|+-++
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence 34567899997555555554 566899999999999999999999999999875 9999999999855443346677777
Q ss_pred CCEE
Q 046954 118 NGEI 121 (146)
Q Consensus 118 ~G~i 121 (146)
.+-+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 6654
No 459
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.14 E-value=1.7e-05 Score=62.13 Aligned_cols=84 Identities=24% Similarity=0.380 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 41 AEISVGQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
..||-|+.+-+++|.+|.+ .|.++++|||-.+|=|..-..+...+...++. + -||++||....+..+--+-++.-+
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~-s-Qv~VsTHS~rLl~~~e~~~v~~~~ 346 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR-S-QVIVSTHSPRLLNAVEEHSVFWLD 346 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc-c-eEEEEeCCHHHHhhccccceEEec
Confidence 4899999999999999975 67899999999999999999999999998753 4 999999999988766555444445
Q ss_pred CEEEEeeC
Q 046954 119 GEIVEVLK 126 (146)
Q Consensus 119 G~i~~~g~ 126 (146)
+..-..|.
T Consensus 347 ~~e~~~ga 354 (373)
T COG4637 347 REEGTFGA 354 (373)
T ss_pred cccccccc
Confidence 44333443
No 460
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.11 E-value=1.2e-05 Score=55.70 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCC----------CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTS----------ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
...+.+..+++..+++...+|+++++|||++ +.|....+.+.+++... ++.+.++|+++|......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCccc
Confidence 3455666777888999999999999999995 44555556666665555 446999999999875443
No 461
>PF13166 AAA_13: AAA domain
Probab=98.10 E-value=1.7e-05 Score=68.28 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=59.3
Q ss_pred CcCCCChhHHHHHHHHH--HHhc-------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHh
Q 046954 39 TGAEISVGQAQRVALAR--TLAN-------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~--al~~-------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~-~~g~tvi~itH~~~~~~~ 108 (146)
+...||-|||.-+++|- |.+. +..++++|-|.|+||...+..+...|.++.. ....-||+-|||+.+...
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~ 576 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE 576 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence 35789999999999986 3334 6789999999999999999999999999851 126899999999887654
Q ss_pred hc
Q 046954 109 IA 110 (146)
Q Consensus 109 ~~ 110 (146)
+.
T Consensus 577 l~ 578 (712)
T PF13166_consen 577 LK 578 (712)
T ss_pred HH
Confidence 43
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.01 E-value=7e-07 Score=73.92 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=55.0
Q ss_pred hhcCCcCCCChhHHHHHHHH--HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-------
Q 046954 35 FLSKTGAEISVGQAQRVALA--RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ------- 105 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia--~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~------- 105 (146)
+.++.+..+|+|++|||.|+ .++...|+.. +..++.+.++++.+++ .|+|+|+++|+++.
T Consensus 108 ~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~ 176 (484)
T TIGR02655 108 LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARY 176 (484)
T ss_pred HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEecCcccccccccC
Confidence 44455567889999999888 5555555433 5678889999988864 69999999998764
Q ss_pred -H-HhhcCeEEEEE
Q 046954 106 -I-QRIADVVCLLV 117 (146)
Q Consensus 106 -~-~~~~d~v~~l~ 117 (146)
+ ..+||.|+.|+
T Consensus 177 ~~~e~laDgVI~L~ 190 (484)
T TIGR02655 177 GVEEFVSDNVVILR 190 (484)
T ss_pred CceeEeeeeEEEEE
Confidence 2 66889999887
No 463
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.96 E-value=1.9e-05 Score=64.68 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCChhHHHHHHHHH-HH----h-cCCC-EEEee-----------------CC--CCCCCHHHHHHHHHHHHHHHH-hcC
Q 046954 41 AEISVGQAQRVALAR-TL----A-NEPE-VLLLD-----------------EP--TSALDPISTQNIEDVLVKLKK-KHG 93 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~-al----~-~~p~-llllD-----------------EP--t~~LD~~~~~~~~~~l~~l~~-~~g 93 (146)
.+=|-++|-+...+. ++ . ++-+ ++++| || |+|+||.....+.+++.++.+ +.|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 456777777665332 22 1 2333 67778 75 679999999999999999864 247
Q ss_pred C-----eEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954 94 M-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 129 (146)
Q Consensus 94 ~-----tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 129 (146)
. ||++.+||+++ .+||++..+.+|+|+.+++..+
T Consensus 302 sIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 302 SITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 5 99999999985 8899999999999998887643
No 464
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00013 Score=61.11 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=61.8
Q ss_pred CCCChhHHHHHHHHHHH--hcC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 41 AEISVGQAQRVALARTL--ANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al--~~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
..-||||--|+++|.-. +.. .+.||+||--+|+.-.....|-+.|+++.+ ..-|++|||-+..+. ++|.=+.+
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~--~~QVl~VTHlPQVAa-~ad~H~~V 506 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE--HHQVLCVTHLPQVAA-MADTHFLV 506 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc--CceEEEEecHHHHHh-hhcceEEE
Confidence 45799999999998744 333 569999999999999999999999999974 789999999987664 57775555
Q ss_pred EC
Q 046954 117 VN 118 (146)
Q Consensus 117 ~~ 118 (146)
++
T Consensus 507 ~K 508 (557)
T COG0497 507 EK 508 (557)
T ss_pred EE
Confidence 44
No 465
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=1.2e-05 Score=70.24 Aligned_cols=74 Identities=31% Similarity=0.294 Sum_probs=58.3
Q ss_pred cCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954 37 SKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~ 112 (146)
....++||||||-.||++..|+ ..++++||||--|+||......|..+|+.-- .+.-+|+||=--.. ...||+
T Consensus 1077 KeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--~~sQFIVVSLKeGM-F~NANv 1153 (1174)
T KOG0933|consen 1077 KESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--THSQFIVVSLKEGM-FNNANV 1153 (1174)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC--CCCeEEEEEchhhc-cccchh
Confidence 3456799999999999887664 4668999999999999999999999999854 36778888765333 234555
Q ss_pred E
Q 046954 113 V 113 (146)
Q Consensus 113 v 113 (146)
+
T Consensus 1154 L 1154 (1174)
T KOG0933|consen 1154 L 1154 (1174)
T ss_pred h
Confidence 4
No 466
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.81 E-value=5.3e-05 Score=66.46 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=43.8
Q ss_pred HhcCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 57 LANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD-~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
+-.+|+++++|||+.+|| +..+..+.+.++.+++ .|.+++++||+++.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHh
Confidence 346899999999999999 7889999999999865 5999999999998664
No 467
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.78 E-value=5.6e-05 Score=67.96 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=60.9
Q ss_pred CCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH----HhcCCeEEEEecCHHHHHh--
Q 046954 41 AEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK----KKHGMTIVMVSHSIKQIQR-- 108 (146)
Q Consensus 41 ~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~----~~~g~tvi~itH~~~~~~~-- 108 (146)
+.-|.|||- |+|+|=.+..+..+|-|||||++||..+..-+...+.++. ++.+.-.|+||||-.++..
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~ 1261 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLG 1261 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhh
Confidence 356999976 6677888899999999999999999999988887766643 3347889999999888764
Q ss_pred ---hcCeEEEEE
Q 046954 109 ---IADVVCLLV 117 (146)
Q Consensus 109 ---~~d~v~~l~ 117 (146)
++++++-+.
T Consensus 1262 ~~~~~e~~yr~~ 1273 (1294)
T KOG0962|consen 1262 RSAYPEYFYRVK 1273 (1294)
T ss_pred hcccchheeeec
Confidence 345556554
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.71 E-value=0.00022 Score=62.97 Aligned_cols=69 Identities=25% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHHhc--CCCEEEeeCC---CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954 41 AEISVGQAQRVALARTLAN--EPEVLLLDEP---TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~--~p~llllDEP---t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~ 112 (146)
..+|.-+.....++.+|-. ++.++|+||| |+.+|. ....+.++..+.+..|.+++++||.. ++..++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile~l~~~~~~~~l~aTH~~-el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAEYLHDKIGAKTLFATHYH-ELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHHHHHhcCCceEEEEechH-HHHHHhhh
Confidence 4567777888888888765 9999999999 888883 33456667777654468999999994 55566765
No 469
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.67 E-value=3e-05 Score=56.29 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--HHhhcCeEEEEECCE
Q 046954 45 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--IQRIADVVCLLVNGE 120 (146)
Q Consensus 45 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--~~~~~d~v~~l~~G~ 120 (146)
.|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+... .|.+|++.+|.+.+ ...+||+++++..+.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 488999999999999999988887 78999999999999988753 46799999999965 778999999988763
No 470
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.63 E-value=0.00019 Score=62.99 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=45.6
Q ss_pred HHhcCCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 56 TLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 56 al~~~p~llllDEPt~~LD-~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
.+..+|.++++|||...|| +.....+.+.++.+++ .|.+++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHh
Confidence 3457899999999999999 8889999999999865 58999999999988654
No 471
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=8.6e-05 Score=65.94 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=64.4
Q ss_pred CcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 39 TGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
.+..||||+|-.-+||..++. ..++++|||--|+||..+.-.+...|++.. .+.-+|+||=.-+ ..++++|.+
T Consensus 1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT--kNAQFIIISLRnn-MFELa~rLv 1268 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT--KNAQFIIISLRNN-MFELANRLV 1268 (1293)
T ss_pred hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc--cCCeEEEEEehhh-HHHHHhhhe
Confidence 468999999999999998873 568999999999999999999999999854 4788999988754 456899977
Q ss_pred EEE
Q 046954 115 LLV 117 (146)
Q Consensus 115 ~l~ 117 (146)
-+.
T Consensus 1269 GIY 1271 (1293)
T KOG0996|consen 1269 GIY 1271 (1293)
T ss_pred eeE
Confidence 664
No 472
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.0006 Score=54.53 Aligned_cols=76 Identities=29% Similarity=0.398 Sum_probs=61.7
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 41 AEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
...|-||++-+++|.-|+ ..++|||||+-+|-||+.-+..+++. .. .+.-+++++-+.+.+...-.
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~----~~~Q~fvT~t~~~~~~~~~~ 348 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE----LGVQVFVTTTDLEDIDDNLD 348 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc----cCCeEEEEccCHHHhhhhhh
Confidence 468999999999988775 47899999999999999999999988 32 26677777777777774444
Q ss_pred ---eEEEEECCEE
Q 046954 112 ---VVCLLVNGEI 121 (146)
Q Consensus 112 ---~v~~l~~G~i 121 (146)
+++.+.+|+|
T Consensus 349 ~~~~~f~V~~g~i 361 (363)
T COG1195 349 ENAQMFHVEDGKI 361 (363)
T ss_pred ccceEEEEeccee
Confidence 6888888886
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.42 E-value=8.8e-05 Score=58.10 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcc
Q 046954 50 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM-TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 128 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~-tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 128 (146)
.-.+..+|-.+|+++++|||.+ ....++++.+.. |. +++.++|..+ +....+|+..|..|++...|.+.
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~--g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~ 277 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT--GHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDF 277 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc--CCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCH
Confidence 3467778999999999999996 345666776653 54 5699999988 55668999999999888777766
Q ss_pred cc
Q 046954 129 LL 130 (146)
Q Consensus 129 ~~ 130 (146)
+.
T Consensus 278 ~~ 279 (308)
T TIGR02788 278 AY 279 (308)
T ss_pred HH
Confidence 54
No 474
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.20 E-value=0.0019 Score=52.74 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=67.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH---------------HHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS---------------TQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~---------------~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
.+=||-.-|=..|.-||=..+++||+||=|++--.-- ..-+.+.++.+.++.|.+.|+|+=-...
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd 400 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD 400 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence 3569999999999999999999999999999753332 3334666777777789999999988888
Q ss_pred HHhhcCeEEEEECCEE
Q 046954 106 IQRIADVVCLLVNGEI 121 (146)
Q Consensus 106 ~~~~~d~v~~l~~G~i 121 (146)
....||+|+.|++=+-
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 9999999999988654
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.00069 Score=49.68 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 52 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 52 ~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
+++++|..+|+++++|||. |+.....+. +.+. .|..++.++|..+.. ...+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G~~v~~t~Ha~~~~-~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TGHLVMSTLHTNSAA-KTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cCCEEEEEecCCcHH-HHHhHHHhh
Confidence 5788999999999999996 555433333 3343 499999999998755 456777655
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.09 E-value=0.00058 Score=55.92 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=62.8
Q ss_pred CcCCCChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 39 TGAEISVGQAQRVALARTLA-------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al~-------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
...+.|.|+|+|++.+.+.+ .++-++++|+||...|+. +++...+.+... .|.+..+.||..... +
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~L~----E 290 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKKLL----E 290 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchhHH----H
Confidence 35788999999999999887 789999999999999996 666666666653 388888888854444 4
Q ss_pred eEEEEECCEEEEeeCc
Q 046954 112 VVCLLVNGEIVEVLKP 127 (146)
Q Consensus 112 ~v~~l~~G~i~~~g~~ 127 (146)
|.-..+.|.|...++.
T Consensus 291 Rag~~~~GSiT~~~tv 306 (432)
T PRK06793 291 RSGKTQKGSITGIYTV 306 (432)
T ss_pred HhccCCCcceEEEEEE
Confidence 4444578998765543
No 477
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.00083 Score=53.11 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=37.8
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 64 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 64 lllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
+++|||+.+||+.++..+.+.|.+.. .+.++|++||+++.+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 55789999999999999999999974 378999999999866543
No 478
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.0018 Score=57.36 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=63.2
Q ss_pred CCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954 38 KTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v 113 (146)
++...||||+|--.++|.-++. .+++.+|||--|+||-.+...+...|+ . .+.-+|+||=-..+.. -+|-.
T Consensus 1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~-~~~Q~IvISLK~~~y~-kadaL 1121 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---S-SNFQFIVISLKEEFYQ-KADAL 1121 (1141)
T ss_pred CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---c-CCceEEEEeccHHHhh-hhhce
Confidence 4567899999999999998874 358999999999999999999999988 2 3788888888766554 47877
Q ss_pred EEEECC
Q 046954 114 CLLVNG 119 (146)
Q Consensus 114 ~~l~~G 119 (146)
+-+-.+
T Consensus 1122 VGvyr~ 1127 (1141)
T KOG0018|consen 1122 VGVYRD 1127 (1141)
T ss_pred eeeccC
Confidence 666544
No 479
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.0036 Score=52.49 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHHHHh---cCC-----CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 42 EISVGQAQRVALARTLA---NEP-----EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~---~~p-----~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
.||-|++.-++++-=|+ -+| +++++|.|.+++|..........++..+. +++-|++-||+-.++..+.+
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t-~~kQviVLtHntYF~rd~~~ 605 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT-NIKQVIVLTHNTYFYRDITL 605 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh-CceEEEEEeccceehHHHHh
Confidence 49999999888765443 344 58899999999999999999999999986 59999999999777665543
No 480
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.70 E-value=0.0032 Score=51.73 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=52.3
Q ss_pred cCCCEEEeeCCCCCCCHH-HHHHHHHHHHHHHHhcCCeEEEEe-cCHHHHHhhcCeEE-EEECCEEEEeeCcc
Q 046954 59 NEPEVLLLDEPTSALDPI-STQNIEDVLVKLKKKHGMTIVMVS-HSIKQIQRIADVVC-LLVNGEIVEVLKPD 128 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~-~~~~~~~~l~~l~~~~g~tvi~it-H~~~~~~~~~d~v~-~l~~G~i~~~g~~~ 128 (146)
.+|++|++|||...+|.. .+..++..+..+.+ .|+.+|+++ |++..+..+.+|+. -+..|-++...+|+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence 479999999999988765 45778899988865 477777766 88888877777765 36677776665664
No 481
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.68 E-value=0.0029 Score=46.95 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=44.0
Q ss_pred cCCCEEEeeC-----CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC---------HHHHHhhcCeEEEEE
Q 046954 59 NEPEVLLLDE-----PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS---------IKQIQRIADVVCLLV 117 (146)
Q Consensus 59 ~~p~llllDE-----Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~---------~~~~~~~~d~v~~l~ 117 (146)
.+++.+++|- |+.+.|...+..+.++++.+++ .|.|+++++|. +..+..+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 4789999993 2334455667788888888864 69999999995 244678899999995
No 482
>PF13514 AAA_27: AAA domain
Probab=96.62 E-value=0.0068 Score=55.12 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=52.7
Q ss_pred CcCCCChhHHH------HHHHHHHH-hcCCCE-EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 39 TGAEISVGQAQ------RVALARTL-ANEPEV-LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 39 ~~~~LSgG~~q------rv~ia~al-~~~p~l-lllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
++..||.|.+= |++++..+ ..++++ +|+|+||.+.|..-...++++|.++++ ..-||+-||+...+.
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~--~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSR--RRQVIYFTCHEHLVE 1096 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhcc--CCeEEEEeccHHHHH
Confidence 45689999965 55555555 345554 999999999999999999999999975 568888888866553
No 483
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.44 E-value=0.037 Score=41.81 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred CCCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HHHhcCCeEEEEecCHHHH
Q 046954 41 AEISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al--~~~p~llllDEPt~~LD~~~~~~~~~~l~~-l~~~~g~tvi~itH~~~~~ 106 (146)
..+|.=+.-...++..+ +.+..++|+||+..|=++.....+...+.+ +.+..+..++++||..+..
T Consensus 101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA 169 (235)
T ss_dssp TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence 34665555555555555 456779999999999999999888666555 4432488999999998753
No 484
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=96.42 E-value=0.011 Score=48.21 Aligned_cols=82 Identities=13% Similarity=0.219 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH----------HHHHHHHHHHHHhc--CCeEEEEecCHHHHHh
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST----------QNIEDVLVKLKKKH--GMTIVMVSHSIKQIQR 108 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~----------~~~~~~l~~l~~~~--g~tvi~itH~~~~~~~ 108 (146)
..=||-+.+-..|=+++=...+.+++||=+++-..-.+ +.+..+..+..... +.++|.+|--++....
T Consensus 319 gdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla 398 (554)
T COG3044 319 GDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLA 398 (554)
T ss_pred CCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhh
Confidence 46799999999999999999999999999987643322 22333333332222 4899999999999999
Q ss_pred hcCeEEEEECCEEE
Q 046954 109 IADVVCLLVNGEIV 122 (146)
Q Consensus 109 ~~d~v~~l~~G~i~ 122 (146)
.+||+++|++-+-.
T Consensus 399 ~aDRaIvMeDhrpk 412 (554)
T COG3044 399 VADRAIVMEDHRPK 412 (554)
T ss_pred hcceEEEecccCcc
Confidence 99999999998744
No 485
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.29 E-value=0.064 Score=35.21 Aligned_cols=62 Identities=32% Similarity=0.362 Sum_probs=48.8
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHH-----HHHHHHHhcCCeEEEEecC
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-----VLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~-----~l~~l~~~~g~tvi~itH~ 102 (146)
...++++..+..+.++-..+|.++++||+..-.+......... .........+..+|+++|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4567888888899999988899999999999999998887765 1222233457889999984
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.28 E-value=0.017 Score=42.91 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH--------HHHhhcCeEEEEE
Q 046954 60 EPEVLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHSIK--------QIQRIADVVCLLV 117 (146)
Q Consensus 60 ~p~llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~--------~~~~~~d~v~~l~ 117 (146)
+|+.+++|-|+.-+ ++...+.+...+.++.++.|+|+++++|... .+..+||.|+.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57888999887643 4444455555555555567999999999643 2456788888887
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.20 E-value=0.011 Score=48.95 Aligned_cols=62 Identities=19% Similarity=0.396 Sum_probs=46.9
Q ss_pred cCCCEEEeeCCCCCC---------CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------HHhhcCeEEEEECCE
Q 046954 59 NEPEVLLLDEPTSAL---------DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVNGE 120 (146)
Q Consensus 59 ~~p~llllDEPt~~L---------D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--------~~~~~d~v~~l~~G~ 120 (146)
.+|+++++|.-++-. +....+.+...|.+++++.|.|+++++|.... +..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 589999999765422 12335566667888878889999999996543 677899999998664
No 488
>PRK13764 ATPase; Provisional
Probab=96.11 E-value=0.034 Score=47.55 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=49.3
Q ss_pred HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec---------------CHHHHHhhcCeEEEEECC
Q 046954 55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---------------SIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 55 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH---------------~~~~~~~~~d~v~~l~~G 119 (146)
.+|.++|+++++||.=. ..+ ++++..++. .|..++-+-| ++..+..++|+|+++++|
T Consensus 319 ~lLR~rPD~IivGEiRd---~Et----~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G 390 (602)
T PRK13764 319 ILLLVRPDYTIYDEMRK---TED----FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDG 390 (602)
T ss_pred HHHhhCCCEEEECCCCC---HHH----HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCC
Confidence 34789999999999974 332 444444443 3888999999 888899999999999999
Q ss_pred EE--EEeeC
Q 046954 120 EI--VEVLK 126 (146)
Q Consensus 120 ~i--~~~g~ 126 (146)
+| +++++
T Consensus 391 ~I~~v~~~~ 399 (602)
T PRK13764 391 EVSKVYDLE 399 (602)
T ss_pred EEEEEEeee
Confidence 99 44444
No 489
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.98 E-value=0.026 Score=42.94 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=50.0
Q ss_pred HHHHHHHHHHh--cCCCEEEeeCCCCCCCHH--------HHHHHHHHHHHHHHhcCCeEEEEecCHH-------------
Q 046954 48 AQRVALARTLA--NEPEVLLLDEPTSALDPI--------STQNIEDVLVKLKKKHGMTIVMVSHSIK------------- 104 (146)
Q Consensus 48 ~qrv~ia~al~--~~p~llllDEPt~~LD~~--------~~~~~~~~l~~l~~~~g~tvi~itH~~~------------- 104 (146)
...+..++.++ .+|+++++|.++.-.+.. ....+...|+.++++.|+||++++|--.
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~ 205 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEV 205 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCc
Confidence 34445555554 479999999876644331 2346667788888888999999998421
Q ss_pred ---------HHHhhcCeEEEEEC
Q 046954 105 ---------QIQRIADVVCLLVN 118 (146)
Q Consensus 105 ---------~~~~~~d~v~~l~~ 118 (146)
.+...||-|+.|+.
T Consensus 206 ~~~d~~gs~~i~~~aD~vi~l~r 228 (271)
T cd01122 206 SLSDFRGSAAIGQLADNVIALER 228 (271)
T ss_pred eEEeccCcHhHhhhccEEEEEEe
Confidence 46678899998864
No 490
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.93 E-value=0.0089 Score=53.31 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=60.5
Q ss_pred cCCCChhHHHHHHHHHHH----hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEEecCHHHHHhhcCeEE
Q 046954 40 GAEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT-IVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al----~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t-vi~itH~~~~~~~~~d~v~ 114 (146)
...||||||--+.+|..| +...++..|||----+|..+++..+++|.+.+.+.+.- |+++=||+..+.. .|.|.
T Consensus 987 ~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~-~~~i~ 1065 (1074)
T KOG0250|consen 987 TRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNS-DDGIV 1065 (1074)
T ss_pred ccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhcc-ccceE
Confidence 468999999988888777 46889999999999999999999999999998776654 4555577877754 34444
Q ss_pred EE
Q 046954 115 LL 116 (146)
Q Consensus 115 ~l 116 (146)
+.
T Consensus 1066 v~ 1067 (1074)
T KOG0250|consen 1066 VF 1067 (1074)
T ss_pred Ee
Confidence 43
No 491
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.061 Score=46.71 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCCChhHHHHHH---HHHHHh--------cCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC--HHH
Q 046954 41 AEISVGQAQRVA---LARTLA--------NEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS--IKQ 105 (146)
Q Consensus 41 ~~LSgG~~qrv~---ia~al~--------~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~--~~~ 105 (146)
..+|||||++++ +|.+|. ..| ..+||||.|+--|+.....++..+.++ |.-.+++|-. +..
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f----glh~v~iTPlk~I~~ 1064 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF----GLHAVFITPLKEIRL 1064 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc----CceEEEechHHHHHH
Confidence 579999999986 455553 234 379999999999999999999998765 7778888864 445
Q ss_pred HHhhcCeEEEEEC
Q 046954 106 IQRIADVVCLLVN 118 (146)
Q Consensus 106 ~~~~~d~v~~l~~ 118 (146)
+..+...+++.++
T Consensus 1065 l~~~v~S~ivVh~ 1077 (1104)
T COG4913 1065 LRHHVRSAIVVHR 1077 (1104)
T ss_pred HHhhccceEEEec
Confidence 5566656666654
No 492
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=95.77 E-value=0.066 Score=47.55 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 42 EISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al--~~~p~llllDEPt~~LD~~~~~~~~~~l-~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
.+|.=+.-...++..| +.++.++|+||+..|-|+.....+...+ ..+.+..|..++++||..+.. .++
T Consensus 651 g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~-~l~ 721 (840)
T TIGR01070 651 GRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT-ALE 721 (840)
T ss_pred CcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH-HHh
Confidence 3454445555556555 5788999999998888887777765544 444432588999999997654 344
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.69 E-value=0.012 Score=49.18 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=45.6
Q ss_pred cCCCEEEee---CCCCCCCHHH--HHHHHHHHHHHHHhcCCeEEEEecCHH---------HHHhhcCeEEEEE
Q 046954 59 NEPEVLLLD---EPTSALDPIS--TQNIEDVLVKLKKKHGMTIVMVSHSIK---------QIQRIADVVCLLV 117 (146)
Q Consensus 59 ~~p~llllD---EPt~~LD~~~--~~~~~~~l~~l~~~~g~tvi~itH~~~---------~~~~~~d~v~~l~ 117 (146)
.+|+.+++| .|++++|... +..+.+++..++ +.|+|+|+++|... ....+||.|+.|+
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk-~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLK-QKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHH-hCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 589999999 4667788766 677888877775 46999999999864 2345789999997
No 494
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.65 E-value=0.047 Score=38.93 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=51.0
Q ss_pred HHHHHHHHh--cCCCEEEeeCCCCC--CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHhhcCeEEEEEC
Q 046954 50 RVALARTLA--NEPEVLLLDEPTSA--LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN 118 (146)
Q Consensus 50 rv~ia~al~--~~p~llllDEPt~~--LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-~~~~~~d~v~~l~~ 118 (146)
-...|+..+ .+.++++|||-... ++......+.++|+.. ..+..+|++.+++. .+.++||.|--|+.
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r--p~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK--PEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC--CCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 334445444 45799999999876 6667788899988763 34889999999955 58889999988865
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.42 E-value=0.051 Score=43.22 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 52 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 52 ~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+++++|-++|+++++||+. |+.+....++. + ..|++++.+.|-.+.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA----A-ETGHLVFGTLHTNSA 232 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-HcCCcEEEEEcCCCH
Confidence 5778899999999999997 88877654442 3 359999999998443
No 496
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.37 E-value=0.045 Score=39.16 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHH--HHHHHhc-CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVA--LARTLAN-EPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~--ia~al~~-~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~ 91 (146)
.+.++++..++.--+...++..+|+|++|++. +++.+-. +++++ |+|++|..+...+.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 34556666665422344567789999999877 5555543 34443 99999999999999999987653
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.26 E-value=0.092 Score=42.39 Aligned_cols=63 Identities=17% Similarity=0.376 Sum_probs=46.0
Q ss_pred hcCCCEEEeeCCCC----CCC-----HHHHHHHHHHHHHHHHhcCCeEEEEecCHH--------HHHhhcCeEEEEECCE
Q 046954 58 ANEPEVLLLDEPTS----ALD-----PISTQNIEDVLVKLKKKHGMTIVMVSHSIK--------QIQRIADVVCLLVNGE 120 (146)
Q Consensus 58 ~~~p~llllDEPt~----~LD-----~~~~~~~~~~l~~l~~~~g~tvi~itH~~~--------~~~~~~d~v~~l~~G~ 120 (146)
-.+|+++++|+-.+ .+| ....+.+...|.+++++.|.+++++.|-.. .++.++|.|+.++.++
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~ 235 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence 35999999999533 222 234456667777888888999999998432 3688899999997553
No 498
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.18 E-value=0.018 Score=53.79 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=44.2
Q ss_pred cCCCChhHHHHHHHHHHHh--------c--------CC-CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 40 GAEISVGQAQRVALARTLA--------N--------EP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~--------~--------~p-~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
.+.||||||.....+..++ . -| .+|+|||. +++|..+...++++++.+ |.-.||+|-.
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~----~~q~i~~tP~ 1437 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL----DMQLLIAAPE 1437 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc----CCcEEEechh
Confidence 5789999998877766554 2 22 45699999 999999999999998743 6666666643
No 499
>PRK04296 thymidine kinase; Provisional
Probab=95.10 E-value=0.18 Score=36.63 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=39.7
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC---------H-HHHHhhcCeEEEEE
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS---------I-KQIQRIADVVCLLV 117 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~---------~-~~~~~~~d~v~~l~ 117 (146)
.+++++++||-- -++. +++.++++.++ ..|++||++.++ . ..+..+||.|..|+
T Consensus 77 ~~~dvviIDEaq-~l~~---~~v~~l~~~l~-~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 77 EKIDCVLIDEAQ-FLDK---EQVVQLAEVLD-DLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCEEEEEccc-cCCH---HHHHHHHHHHH-HcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 478999999992 2443 33566666655 459999999999 3 35678899998774
No 500
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.03 E-value=0.1 Score=43.15 Aligned_cols=59 Identities=17% Similarity=0.423 Sum_probs=44.6
Q ss_pred cCCCEEEeeCCCCCCC---------HHHHHHHHHHHHHHHHhcCCeEEEEecC--------HHHHHhhcCeEEEEE
Q 046954 59 NEPEVLLLDEPTSALD---------PISTQNIEDVLVKLKKKHGMTIVMVSHS--------IKQIQRIADVVCLLV 117 (146)
Q Consensus 59 ~~p~llllDEPt~~LD---------~~~~~~~~~~l~~l~~~~g~tvi~itH~--------~~~~~~~~d~v~~l~ 117 (146)
.+|+++++|+.++-.. ....+.+...|.+++++.|.++++++|- ...+..++|.|+.++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le 230 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE 230 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence 5899999999875432 2234556666778877889999999994 234788899999997
Done!