Query 046954
Match_columns 146
No_of_seqs 209 out of 2163
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4E-39 1.4E-43 254.4 16.9 142 1-143 121-265 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 2.6E-38 9E-43 249.4 17.4 141 1-142 96-239 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 2E-38 6.8E-43 251.7 16.2 142 1-143 91-235 (381)
4 2onk_A Molybdate/tungstate ABC 100.0 4.2E-38 1.4E-42 236.6 14.5 141 1-142 86-226 (240)
5 4g1u_C Hemin import ATP-bindin 100.0 6.4E-38 2.2E-42 238.8 15.5 131 1-132 101-237 (266)
6 3gfo_A Cobalt import ATP-bindi 100.0 3.4E-38 1.2E-42 241.3 12.7 131 1-132 101-233 (275)
7 1z47_A CYSA, putative ABC-tran 100.0 1.7E-37 5.7E-42 244.6 16.8 142 1-143 103-247 (355)
8 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-37 7.9E-42 243.9 17.3 142 1-143 98-242 (353)
9 3d31_A Sulfate/molybdate ABC t 100.0 1.6E-37 5.4E-42 244.3 15.8 141 1-143 88-229 (348)
10 2yyz_A Sugar ABC transporter, 100.0 2.3E-37 8E-42 244.2 16.5 142 1-143 91-235 (359)
11 3tif_A Uncharacterized ABC tra 100.0 2.3E-37 7.7E-42 231.9 14.7 130 1-131 99-233 (235)
12 1v43_A Sugar-binding transport 100.0 4.1E-37 1.4E-41 243.8 16.8 142 1-143 99-243 (372)
13 1g29_1 MALK, maltose transport 100.0 3.5E-37 1.2E-41 244.3 16.1 142 1-143 97-241 (372)
14 2it1_A 362AA long hypothetical 100.0 2.3E-37 7.9E-42 244.4 14.9 142 1-143 91-235 (362)
15 1b0u_A Histidine permease; ABC 100.0 1.1E-36 3.7E-41 231.4 16.9 140 1-142 109-253 (262)
16 2olj_A Amino acid ABC transpor 100.0 1.5E-36 5.3E-41 230.8 17.2 140 1-142 116-259 (263)
17 1g6h_A High-affinity branched- 100.0 1.6E-36 5.6E-41 229.8 13.2 127 1-129 98-239 (257)
18 2pcj_A ABC transporter, lipopr 100.0 5.1E-36 1.7E-40 223.0 14.8 123 1-126 98-222 (224)
19 1vpl_A ABC transporter, ATP-bi 100.0 5.1E-36 1.7E-40 227.2 13.8 129 1-131 104-234 (256)
20 1ji0_A ABC transporter; ATP bi 100.0 8.8E-36 3E-40 223.8 14.5 130 1-132 97-228 (240)
21 2yz2_A Putative ABC transporte 100.0 9.9E-36 3.4E-40 226.6 14.2 130 1-131 95-226 (266)
22 2nq2_C Hypothetical ABC transp 100.0 1.9E-35 6.5E-40 223.6 15.5 129 1-131 82-216 (253)
23 2qi9_C Vitamin B12 import ATP- 100.0 6.1E-35 2.1E-39 220.4 15.2 127 1-132 89-222 (249)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-35 5.8E-40 226.7 12.2 130 1-132 115-252 (279)
25 2ixe_A Antigen peptide transpo 100.0 1.5E-34 5.1E-39 220.6 11.7 135 1-137 108-250 (271)
26 3nh6_A ATP-binding cassette SU 100.0 8.1E-34 2.8E-38 219.9 15.3 126 1-133 143-278 (306)
27 2ff7_A Alpha-hemolysin translo 100.0 1.2E-33 4.1E-38 213.0 15.3 125 1-133 98-233 (247)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 1.4E-34 4.7E-39 218.5 10.0 127 1-128 96-229 (250)
29 2pjz_A Hypothetical protein ST 100.0 4.3E-34 1.5E-38 217.3 11.3 125 1-131 89-214 (263)
30 2zu0_C Probable ATP-dependent 100.0 5.2E-34 1.8E-38 217.2 10.3 110 20-130 141-252 (267)
31 2ghi_A Transport protein; mult 100.0 5.2E-33 1.8E-37 211.0 13.0 129 1-137 108-247 (260)
32 1mv5_A LMRA, multidrug resista 100.0 3.4E-33 1.2E-37 210.0 10.9 125 1-132 91-226 (243)
33 3gd7_A Fusion complex of cysti 100.0 6.5E-33 2.2E-37 220.9 9.9 134 1-143 109-254 (390)
34 2pze_A Cystic fibrosis transme 100.0 8.1E-32 2.8E-36 200.9 13.7 132 1-140 84-226 (229)
35 2yl4_A ATP-binding cassette SU 100.0 3.2E-31 1.1E-35 220.8 17.0 127 1-132 433-570 (595)
36 3b5x_A Lipid A export ATP-bind 100.0 2.3E-31 7.9E-36 221.1 16.1 127 1-134 432-569 (582)
37 2cbz_A Multidrug resistance-as 100.0 3.7E-32 1.3E-36 203.7 9.9 99 36-137 121-222 (237)
38 3qf4_A ABC transporter, ATP-bi 100.0 3E-31 1E-35 220.8 15.3 126 1-133 432-567 (587)
39 4a82_A Cystic fibrosis transme 100.0 3.2E-31 1.1E-35 220.2 14.9 129 1-137 430-569 (578)
40 3b60_A Lipid A export ATP-bind 100.0 2.8E-31 9.4E-36 220.7 13.9 126 1-133 432-568 (582)
41 3j16_B RLI1P; ribosome recycli 100.0 1.6E-31 5.6E-36 222.9 12.5 113 19-132 445-559 (608)
42 3ux8_A Excinuclease ABC, A sub 100.0 5.6E-31 1.9E-35 221.8 15.7 135 1-141 506-649 (670)
43 3qf4_B Uncharacterized ABC tra 100.0 2.4E-31 8.2E-36 221.7 13.2 129 1-137 444-583 (598)
44 1sgw_A Putative ABC transporte 100.0 2E-32 6.9E-37 202.5 5.3 117 1-121 94-210 (214)
45 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-30 4.5E-35 215.0 12.7 127 1-129 346-474 (538)
46 3ux8_A Excinuclease ABC, A sub 100.0 1.9E-30 6.5E-35 218.6 12.8 116 24-141 184-307 (670)
47 2bbs_A Cystic fibrosis transme 100.0 5E-30 1.7E-34 197.3 12.6 122 1-132 114-247 (290)
48 3pih_A Uvrabc system protein A 100.0 7.9E-30 2.7E-34 220.1 15.0 122 20-143 783-913 (916)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 6.1E-30 2.1E-34 211.1 12.8 112 19-131 379-492 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 1.3E-29 4.6E-34 211.5 13.6 112 19-131 449-562 (607)
51 4f4c_A Multidrug resistance pr 100.0 2.9E-30 9.8E-35 230.3 9.2 129 1-134 1168-1306(1321)
52 4f4c_A Multidrug resistance pr 100.0 3.8E-29 1.3E-33 223.0 13.6 127 1-134 507-643 (1321)
53 3bk7_A ABC transporter ATP-bin 100.0 1.1E-28 3.8E-33 205.9 13.2 97 21-119 208-304 (607)
54 2iw3_A Elongation factor 3A; a 100.0 2.4E-28 8.1E-33 211.6 15.6 121 1-130 512-633 (986)
55 3g5u_A MCG1178, multidrug resi 100.0 8.9E-29 3E-33 220.2 13.0 129 1-135 1122-1261(1284)
56 2r6f_A Excinuclease ABC subuni 100.0 5E-28 1.7E-32 208.7 14.7 120 21-142 824-952 (972)
57 2vf7_A UVRA2, excinuclease ABC 100.0 3.1E-28 1.1E-32 208.7 13.1 121 20-142 708-837 (842)
58 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-28 1.2E-32 200.6 12.8 97 21-119 138-234 (538)
59 3g5u_A MCG1178, multidrug resi 100.0 3.1E-28 1.1E-32 216.8 13.1 126 1-133 479-614 (1284)
60 2ygr_A Uvrabc system protein A 99.9 1.3E-27 4.6E-32 206.6 14.5 120 21-142 842-970 (993)
61 3j16_B RLI1P; ribosome recycli 99.9 1.3E-27 4.4E-32 199.4 13.6 101 19-121 199-299 (608)
62 3ozx_A RNAse L inhibitor; ATP 99.9 2.5E-27 8.7E-32 195.4 12.0 97 21-120 118-214 (538)
63 3pih_A Uvrabc system protein A 99.9 4.1E-27 1.4E-31 203.2 12.4 109 22-132 444-560 (916)
64 2r6f_A Excinuclease ABC subuni 99.9 7.5E-27 2.6E-31 201.4 12.7 107 24-132 486-600 (972)
65 2iw3_A Elongation factor 3A; a 99.9 3.8E-27 1.3E-31 204.1 9.2 104 19-126 877-981 (986)
66 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.6E-26 5.4E-31 162.0 9.7 84 36-121 51-142 (148)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.2E-26 4.1E-31 183.4 9.6 85 37-123 274-364 (365)
68 2ygr_A Uvrabc system protein A 99.9 2.7E-26 9.2E-31 198.5 12.2 108 24-133 503-618 (993)
69 2vf7_A UVRA2, excinuclease ABC 99.9 3.9E-25 1.3E-29 189.6 14.3 107 25-133 362-476 (842)
70 4aby_A DNA repair protein RECN 99.9 3.4E-23 1.2E-27 164.9 11.4 80 43-125 296-381 (415)
71 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.1E-25 2.1E-29 178.3 -5.8 101 22-131 218-337 (460)
72 4ad8_A DNA repair protein RECN 99.9 4.2E-22 1.4E-26 163.4 10.7 80 38-120 392-474 (517)
73 3kta_B Chromosome segregation 99.9 1.6E-21 5.3E-26 139.8 10.6 82 36-120 58-145 (173)
74 3qkt_A DNA double-strand break 99.9 6.3E-22 2.2E-26 154.7 8.9 80 36-117 242-327 (339)
75 1e69_A Chromosome segregation 99.9 1.3E-21 4.5E-26 151.9 9.1 91 36-129 213-310 (322)
76 2o5v_A DNA replication and rep 99.8 1.1E-21 3.8E-26 154.7 6.1 86 37-130 259-354 (359)
77 4gp7_A Metallophosphoesterase; 99.8 1.7E-20 5.9E-25 133.5 2.9 68 40-108 81-164 (171)
78 1ye8_A Protein THEP1, hypothet 99.8 6.1E-20 2.1E-24 131.8 5.3 81 35-123 69-159 (178)
79 3auy_A DNA double-strand break 99.8 3.2E-19 1.1E-23 140.9 8.3 77 38-117 276-359 (371)
80 1w1w_A Structural maintenance 99.8 1E-18 3.5E-23 140.3 10.1 78 38-117 329-410 (430)
81 1tf7_A KAIC; homohexamer, hexa 99.7 1.1E-17 3.7E-22 137.5 4.2 85 34-120 345-444 (525)
82 3b85_A Phosphate starvation-in 99.6 1.1E-17 3.8E-22 122.8 -1.8 65 46-121 108-172 (208)
83 3thx_A DNA mismatch repair pro 99.6 3.1E-15 1.1E-19 129.8 7.7 91 39-130 718-811 (934)
84 1cr0_A DNA primase/helicase; R 99.6 1.2E-14 4.3E-19 110.8 9.8 82 39-121 126-237 (296)
85 1tq4_A IIGP1, interferon-induc 99.5 3.6E-16 1.2E-20 125.3 -2.5 97 21-120 136-255 (413)
86 1znw_A Guanylate kinase, GMP k 99.5 1.6E-16 5.3E-21 115.8 -5.1 80 26-117 119-202 (207)
87 2o8b_B DNA mismatch repair pro 99.5 8.3E-14 2.9E-18 122.0 9.0 83 38-122 847-930 (1022)
88 3thx_B DNA mismatch repair pro 99.4 1.4E-13 4.6E-18 119.4 6.7 76 36-113 729-805 (918)
89 2w0m_A SSO2452; RECA, SSPF, un 99.4 3.9E-13 1.3E-17 98.0 8.2 78 42-119 103-192 (235)
90 1nlf_A Regulatory protein REPA 99.4 1.4E-12 4.8E-17 98.8 7.7 80 24-107 101-185 (279)
91 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.2E-13 4E-18 107.7 0.1 67 45-120 225-291 (330)
92 3b9q_A Chloroplast SRP recepto 99.3 3.5E-13 1.2E-17 103.9 2.4 84 27-121 190-284 (302)
93 2ehv_A Hypothetical protein PH 99.3 2.5E-12 8.7E-17 94.8 5.5 73 44-117 119-206 (251)
94 2og2_A Putative signal recogni 99.2 2.4E-12 8.2E-17 101.4 3.5 83 28-121 248-341 (359)
95 2v9p_A Replication protein E1; 99.2 1.4E-14 4.7E-19 111.9 -9.6 82 21-130 183-264 (305)
96 2cvh_A DNA repair and recombin 99.2 3.5E-11 1.2E-15 87.1 8.6 101 19-119 59-185 (220)
97 2obl_A ESCN; ATPase, hydrolase 99.2 1.6E-13 5.4E-18 107.7 -6.4 81 38-130 167-253 (347)
98 1tf7_A KAIC; homohexamer, hexa 99.2 9.6E-12 3.3E-16 102.1 3.9 69 49-118 126-209 (525)
99 4a74_A DNA repair and recombin 99.2 2E-11 6.8E-16 88.9 5.1 102 19-120 73-201 (231)
100 3sop_A Neuronal-specific septi 99.2 6.2E-13 2.1E-17 101.0 -3.2 62 34-104 90-151 (270)
101 1wb9_A DNA mismatch repair pro 99.2 1.2E-11 4.2E-16 106.0 4.4 86 40-127 667-753 (800)
102 1ewq_A DNA mismatch repair pro 99.1 3.2E-11 1.1E-15 103.0 5.9 77 41-124 634-716 (765)
103 1z6g_A Guanylate kinase; struc 99.1 1.6E-13 5.5E-18 100.9 -7.8 92 20-116 105-207 (218)
104 1pzn_A RAD51, DNA repair and r 99.1 5.6E-11 1.9E-15 93.1 4.2 108 19-126 179-309 (349)
105 3aez_A Pantothenate kinase; tr 99.1 1.8E-13 6.2E-18 106.0 -10.2 108 1-120 136-246 (312)
106 2dpy_A FLII, flagellum-specifi 99.0 2.6E-12 8.8E-17 103.6 -5.1 79 40-130 256-342 (438)
107 3asz_A Uridine kinase; cytidin 98.9 1E-12 3.6E-17 95.2 -10.5 85 19-104 67-162 (211)
108 2eyu_A Twitching motility prot 98.9 4.7E-10 1.6E-14 84.7 3.4 60 49-117 87-146 (261)
109 2i3b_A HCR-ntpase, human cance 98.9 2.6E-11 8.8E-16 87.5 -5.1 81 37-124 78-168 (189)
110 3jvv_A Twitching mobility prot 98.8 1.4E-09 4.9E-14 85.4 2.3 58 52-118 188-245 (356)
111 1pui_A ENGB, probable GTP-bind 98.8 4.8E-09 1.7E-13 75.2 4.5 74 21-95 128-202 (210)
112 1n0w_A DNA repair protein RAD5 98.8 2.6E-08 8.8E-13 72.9 7.7 101 19-119 72-209 (243)
113 2qnr_A Septin-2, protein NEDD5 98.7 3.7E-10 1.3E-14 86.7 -4.8 61 36-104 107-168 (301)
114 2jeo_A Uridine-cytidine kinase 98.6 2.9E-09 9.8E-14 79.1 -1.5 83 20-120 97-180 (245)
115 3lda_A DNA repair protein RAD5 98.5 4.1E-07 1.4E-11 72.5 9.0 102 19-120 226-364 (400)
116 2bdt_A BH3686; alpha-beta prot 98.4 1.7E-10 5.8E-15 82.2 -11.2 80 44-130 96-182 (189)
117 3ec2_A DNA replication protein 98.4 1.7E-07 5.7E-12 66.0 4.3 48 56-104 96-144 (180)
118 1lw7_A Transcriptional regulat 98.4 6.6E-09 2.3E-13 81.5 -3.6 90 40-132 256-355 (365)
119 2r6a_A DNAB helicase, replicat 98.3 3.2E-06 1.1E-10 68.0 9.0 80 40-121 293-401 (454)
120 2dr3_A UPF0273 protein PH0284; 98.2 7.1E-06 2.4E-10 59.8 9.3 60 59-118 127-196 (247)
121 1rj9_A FTSY, signal recognitio 98.2 3.7E-07 1.3E-11 70.2 2.3 56 43-103 203-258 (304)
122 3szr_A Interferon-induced GTP- 98.2 1.6E-06 5.4E-11 72.4 5.0 73 56-128 142-233 (608)
123 2ewv_A Twitching motility prot 98.1 1.2E-06 4E-11 69.1 2.0 58 50-116 199-256 (372)
124 2kjq_A DNAA-related protein; s 98.0 7.7E-06 2.6E-10 56.3 5.8 45 56-102 79-124 (149)
125 1sxj_E Activator 1 40 kDa subu 98.0 3E-06 1E-10 65.3 3.8 55 57-114 131-186 (354)
126 2zr9_A Protein RECA, recombina 98.0 2.5E-05 8.4E-10 61.1 8.9 79 48-126 125-237 (349)
127 2bbw_A Adenylate kinase 4, AK4 97.9 4.9E-07 1.7E-11 66.8 -2.3 50 35-91 145-199 (246)
128 2qag_C Septin-7; cell cycle, c 97.9 1.3E-06 4.3E-11 70.0 -1.2 57 42-104 118-178 (418)
129 1nij_A Hypothetical protein YJ 97.8 6.9E-07 2.4E-11 68.9 -2.8 55 42-109 141-195 (318)
130 1udx_A The GTP-binding protein 97.8 6.2E-06 2.1E-10 66.0 1.3 60 37-101 247-306 (416)
131 1odf_A YGR205W, hypothetical 3 97.7 5.8E-07 2E-11 68.7 -5.8 41 37-77 129-169 (290)
132 2xau_A PRE-mRNA-splicing facto 97.6 2.4E-05 8.3E-10 67.0 2.8 73 40-113 188-262 (773)
133 2ius_A DNA translocase FTSK; n 97.5 2.1E-06 7E-11 70.4 -4.4 90 24-115 248-361 (512)
134 3euj_A Chromosome partition pr 97.5 0.00014 4.9E-09 59.2 5.9 73 38-117 375-464 (483)
135 1ni3_A YCHF GTPase, YCHF GTP-b 97.3 2.6E-07 8.8E-12 73.5 -12.1 65 60-127 139-208 (392)
136 1s96_A Guanylate kinase, GMP k 97.2 0.00048 1.7E-08 50.2 5.5 58 54-130 101-158 (219)
137 2f1r_A Molybdopterin-guanine d 97.1 6.3E-06 2.2E-10 58.2 -5.8 50 42-91 103-162 (171)
138 4a1f_A DNAB helicase, replicat 97.0 0.0011 3.6E-08 51.7 5.6 56 41-101 108-164 (338)
139 2ce7_A Cell division protein F 97.0 0.0018 6E-08 52.6 7.0 62 45-106 93-167 (476)
140 2px0_A Flagellar biosynthesis 97.0 0.00045 1.5E-08 52.7 3.3 74 47-124 171-247 (296)
141 1zp6_A Hypothetical protein AT 96.9 9.9E-05 3.4E-09 51.8 -0.9 45 37-89 104-148 (191)
142 1vma_A Cell division protein F 96.6 0.002 6.9E-08 49.3 4.4 59 22-89 151-212 (306)
143 2e87_A Hypothetical protein PH 96.6 0.0037 1.3E-07 48.5 6.0 64 38-104 227-293 (357)
144 1ls1_A Signal recognition part 96.5 0.0089 3E-07 45.3 7.2 55 44-100 164-219 (295)
145 1lw7_A Transcriptional regulat 96.4 0.0017 5.9E-08 50.5 3.2 41 42-88 296-341 (365)
146 3e70_C DPA, signal recognition 95.9 0.023 8E-07 43.8 6.9 68 48-122 231-307 (328)
147 2gza_A Type IV secretion syste 95.7 0.0022 7.7E-08 50.0 0.5 68 44-120 236-303 (361)
148 2z43_A DNA repair and recombin 95.6 0.019 6.5E-07 43.9 5.4 100 19-118 155-289 (324)
149 3bh0_A DNAB-like replicative h 95.4 0.032 1.1E-06 42.5 6.0 54 43-101 134-189 (315)
150 2qag_B Septin-6, protein NEDD5 95.3 0.0088 3E-07 47.9 2.9 57 42-102 161-218 (427)
151 1u94_A RECA protein, recombina 95.3 0.15 5.3E-06 39.6 9.9 74 49-122 128-235 (356)
152 1jcn_A Inosine monophosphate d 95.2 4.3E-05 1.5E-09 62.5 -11.2 69 55-129 28-99 (514)
153 2oap_1 GSPE-2, type II secreti 95.1 5.5E-06 1.9E-10 67.9 -16.7 59 41-112 399-459 (511)
154 3hr8_A Protein RECA; alpha and 95.1 0.34 1.2E-05 37.7 11.2 70 49-118 126-229 (356)
155 1oix_A RAS-related protein RAB 95.0 0.015 5.2E-07 40.5 3.0 37 49-87 152-188 (191)
156 2z4s_A Chromosomal replication 95.0 0.043 1.5E-06 43.8 5.9 68 59-127 193-263 (440)
157 1in4_A RUVB, holliday junction 94.8 0.0025 8.6E-08 49.0 -1.6 56 36-112 156-211 (334)
158 1fnn_A CDC6P, cell division co 94.5 0.048 1.6E-06 41.7 5.0 50 59-109 124-175 (389)
159 1g5t_A COB(I)alamin adenosyltr 94.3 0.049 1.7E-06 39.1 4.3 71 48-120 106-181 (196)
160 1lvg_A Guanylate kinase, GMP k 94.2 0.0023 7.7E-08 45.6 -2.9 57 53-118 116-173 (198)
161 2eyu_A Twitching motility prot 94.0 1.8E-05 6.2E-10 59.4 -15.0 58 41-102 171-239 (261)
162 3b9p_A CG5977-PA, isoform A; A 93.8 0.11 3.9E-06 38.5 5.6 61 44-104 97-170 (297)
163 2qm8_A GTPase/ATPase; G protei 93.7 0.03 1E-06 43.1 2.4 46 41-90 209-260 (337)
164 1v5w_A DMC1, meiotic recombina 93.7 0.1 3.5E-06 40.2 5.3 101 19-119 170-309 (343)
165 2rcn_A Probable GTPase ENGC; Y 93.5 0.013 4.6E-07 45.8 0.0 34 22-57 295-328 (358)
166 2q6t_A DNAB replication FORK h 93.3 0.22 7.6E-06 39.6 6.8 67 52-118 300-397 (444)
167 3c8u_A Fructokinase; YP_612366 92.9 0.00052 1.8E-08 49.1 -8.2 58 40-112 109-168 (208)
168 2x8a_A Nuclear valosin-contain 92.9 0.00044 1.5E-08 52.0 -9.0 48 36-85 131-190 (274)
169 2f9l_A RAB11B, member RAS onco 92.9 0.077 2.6E-06 36.9 3.2 37 51-89 130-166 (199)
170 2ewv_A Twitching motility prot 92.3 4.7E-05 1.6E-09 59.9 -15.6 59 42-104 283-352 (372)
171 2yv5_A YJEQ protein; hydrolase 91.2 0.016 5.6E-07 44.0 -2.1 37 19-55 264-300 (302)
172 3szr_A Interferon-induced GTP- 90.9 0.14 4.9E-06 42.5 3.1 81 40-122 162-252 (608)
173 1p9r_A General secretion pathw 90.8 0.0037 1.3E-07 49.9 -6.3 39 22-65 276-314 (418)
174 2b8t_A Thymidine kinase; deoxy 90.7 0.71 2.4E-05 33.5 6.4 52 60-117 89-150 (223)
175 1jjv_A Dephospho-COA kinase; P 90.6 0.018 6E-07 40.7 -2.3 71 43-118 60-132 (206)
176 1xp8_A RECA protein, recombina 90.4 1.5 5.1E-05 34.1 8.4 72 49-120 139-244 (366)
177 2qtf_A Protein HFLX, GTP-bindi 90.3 0.21 7.3E-06 38.9 3.4 66 22-91 281-354 (364)
178 2i1q_A DNA repair and recombin 90.1 0.72 2.4E-05 34.7 6.2 101 19-119 156-291 (322)
179 4ag6_A VIRB4 ATPase, type IV s 90.0 0.54 1.9E-05 36.4 5.6 60 59-119 261-335 (392)
180 3k1j_A LON protease, ATP-depen 89.3 0.079 2.7E-06 43.9 0.3 46 41-87 182-227 (604)
181 2qby_A CDC6 homolog 1, cell di 87.9 0.076 2.6E-06 40.4 -0.7 47 60-106 128-176 (386)
182 1l8q_A Chromosomal replication 87.8 1 3.5E-05 33.7 5.7 44 58-102 96-140 (324)
183 2w58_A DNAI, primosome compone 87.3 0.71 2.4E-05 32.0 4.2 50 58-108 113-165 (202)
184 3bh0_A DNAB-like replicative h 87.1 3.4 0.00012 31.1 8.2 67 52-118 169-265 (315)
185 1ega_A Protein (GTP-binding pr 85.2 0.49 1.7E-05 35.6 2.6 65 43-114 101-170 (301)
186 1q57_A DNA primase/helicase; d 85.1 5.5 0.00019 31.9 8.9 68 49-117 341-440 (503)
187 2r8r_A Sensor protein; KDPD, P 84.8 0.7 2.4E-05 33.8 3.2 48 53-101 77-125 (228)
188 2orv_A Thymidine kinase; TP4A 84.3 1.9 6.5E-05 31.6 5.3 53 58-117 88-150 (234)
189 3cmw_A Protein RECA, recombina 84.1 4.2 0.00014 37.9 8.5 73 49-121 797-903 (1706)
190 3t34_A Dynamin-related protein 84.0 0.86 2.9E-05 35.0 3.5 61 42-105 154-215 (360)
191 4dgh_A Sulfate permease family 83.7 6.7 0.00023 25.2 7.7 47 58-105 46-93 (130)
192 1xx6_A Thymidine kinase; NESG, 83.6 2.8 9.5E-05 29.5 5.8 52 60-117 81-142 (191)
193 2q6t_A DNAB replication FORK h 83.2 4.4 0.00015 32.0 7.5 56 41-101 263-318 (444)
194 3bos_A Putative DNA replicatio 82.9 1.3 4.6E-05 30.9 4.0 44 58-102 102-147 (242)
195 2yhs_A FTSY, cell division pro 82.9 1.9 6.4E-05 35.2 5.2 51 48-105 398-450 (503)
196 1njg_A DNA polymerase III subu 82.6 0.78 2.7E-05 31.9 2.6 42 60-104 126-167 (250)
197 1b9m_A Protein (mode); DNA-bin 82.2 0.36 1.2E-05 35.3 0.7 40 21-62 54-93 (265)
198 4dgf_A Sulfate transporter sul 80.7 9.2 0.00031 24.7 7.6 45 59-104 50-95 (135)
199 2j9r_A Thymidine kinase; TK1, 80.4 4.4 0.00015 29.2 6.0 52 60-117 101-162 (214)
200 1sxj_D Activator 1 41 kDa subu 79.5 1.5 5E-05 32.9 3.4 42 60-104 133-174 (353)
201 3bgw_A DNAB-like replicative h 78.7 4.9 0.00017 31.9 6.3 54 43-101 263-318 (444)
202 3h4m_A Proteasome-activating n 78.3 1.9 6.6E-05 31.4 3.6 55 50-104 100-167 (285)
203 3cmw_A Protein RECA, recombina 78.3 11 0.00036 35.4 9.0 70 51-120 450-553 (1706)
204 2zts_A Putative uncharacterize 78.1 6.4 0.00022 27.6 6.3 61 57-117 132-206 (251)
205 3oiz_A Antisigma-factor antago 77.9 3.6 0.00012 25.4 4.3 44 58-102 41-85 (99)
206 2qgz_A Helicase loader, putati 77.6 1.5 5.2E-05 33.0 2.9 50 58-108 212-264 (308)
207 3cmu_A Protein RECA, recombina 77.4 7 0.00024 37.2 7.6 73 49-121 448-554 (2050)
208 3cf0_A Transitional endoplasmi 77.4 3.1 0.00011 30.9 4.6 57 50-106 98-167 (301)
209 3io5_A Recombination and repai 77.2 11 0.00037 29.1 7.6 78 25-104 74-173 (333)
210 3llo_A Prestin; STAS domain, c 76.2 13 0.00045 24.1 7.7 45 59-104 62-107 (143)
211 3bgw_A DNAB-like replicative h 75.8 11 0.00037 29.9 7.6 75 42-118 290-394 (444)
212 4a1f_A DNAB helicase, replicat 73.5 6.7 0.00023 30.1 5.6 64 42-107 137-210 (338)
213 3ny7_A YCHM protein, sulfate t 71.7 11 0.00038 23.8 5.6 45 59-105 44-89 (118)
214 2vhj_A Ntpase P4, P4; non- hyd 71.0 19 0.00066 27.6 7.6 57 45-102 167-235 (331)
215 2orw_A Thymidine kinase; TMTK, 70.8 4.6 0.00016 27.9 3.8 52 60-117 76-137 (184)
216 3d8b_A Fidgetin-like protein 1 69.3 11 0.00038 28.6 6.0 56 49-104 165-232 (357)
217 3lnc_A Guanylate kinase, GMP k 69.1 0.063 2.2E-06 38.6 -6.4 65 57-121 145-213 (231)
218 3llm_A ATP-dependent RNA helic 68.7 5.2 0.00018 28.4 3.9 65 44-111 162-228 (235)
219 1x52_A Pelota homolog, CGI-17; 68.6 8.7 0.0003 25.1 4.6 64 41-108 37-102 (124)
220 3o63_A Probable thiamine-phosp 67.9 20 0.0007 26.0 7.0 60 53-113 49-116 (243)
221 1zxx_A 6-phosphofructokinase; 67.7 15 0.0005 28.1 6.3 49 49-103 174-224 (319)
222 3kl4_A SRP54, signal recogniti 67.2 5.3 0.00018 31.8 3.9 38 51-88 170-210 (433)
223 1iy2_A ATP-dependent metallopr 66.8 0.041 1.4E-06 40.8 -8.1 29 40-70 167-195 (278)
224 2chg_A Replication factor C sm 66.0 6.3 0.00022 26.7 3.7 43 59-104 101-143 (226)
225 1pfk_A Phosphofructokinase; tr 65.8 16 0.00056 27.8 6.3 48 49-102 175-224 (320)
226 2kln_A Probable sulphate-trans 65.0 9.7 0.00033 24.4 4.3 44 60-104 47-91 (130)
227 1th8_B Anti-sigma F factor ant 64.6 21 0.00073 21.8 5.9 51 53-104 34-86 (116)
228 3f6p_A Transcriptional regulat 63.8 20 0.00067 21.8 5.5 39 57-101 43-81 (120)
229 2dy1_A Elongation factor G; tr 63.8 12 0.00042 31.2 5.7 44 56-105 95-138 (665)
230 1ypw_A Transitional endoplasmi 62.5 5.7 0.00019 34.1 3.4 58 49-106 286-353 (806)
231 1ixz_A ATP-dependent metallopr 62.3 0.039 1.3E-06 40.2 -8.8 30 40-71 143-172 (254)
232 3co5_A Putative two-component 59.1 22 0.00076 22.9 5.3 40 60-101 75-114 (143)
233 2qz4_A Paraplegin; AAA+, SPG7, 58.7 28 0.00096 24.5 6.2 54 51-104 89-156 (262)
234 3lxx_A GTPase IMAP family memb 58.0 33 0.0011 24.0 6.4 44 58-101 110-154 (239)
235 2ka5_A Putative anti-sigma fac 57.6 33 0.0011 21.7 8.1 47 56-103 47-94 (125)
236 3hu3_A Transitional endoplasmi 57.2 9.6 0.00033 30.7 3.8 54 52-105 289-352 (489)
237 2hqs_H Peptidoglycan-associate 56.2 29 0.00098 22.0 5.3 44 58-101 2-45 (118)
238 1jr3_D DNA polymerase III, del 56.1 11 0.00039 28.1 3.9 46 55-102 71-116 (343)
239 3hkx_A Amidase; alpha-beta-BET 56.1 35 0.0012 24.9 6.5 73 53-125 46-129 (283)
240 4h3d_A 3-dehydroquinate dehydr 55.3 11 0.00039 27.7 3.6 58 40-103 91-149 (258)
241 3u61_B DNA polymerase accessor 54.7 15 0.0005 27.2 4.2 42 60-104 105-147 (324)
242 3cmu_A Protein RECA, recombina 53.8 40 0.0014 32.2 7.6 53 52-104 800-870 (2050)
243 1jr3_A DNA polymerase III subu 53.3 7 0.00024 29.3 2.3 43 59-104 118-160 (373)
244 3bt7_A TRNA (uracil-5-)-methyl 53.0 21 0.00072 27.3 5.0 40 60-108 295-334 (369)
245 3v2d_F 50S ribosomal protein L 52.6 32 0.0011 24.5 5.5 55 48-104 105-162 (210)
246 1u0l_A Probable GTPase ENGC; p 51.6 1.1 3.8E-05 33.6 -2.5 27 19-45 268-294 (301)
247 3i42_A Response regulator rece 51.1 33 0.0011 20.8 5.0 42 58-102 45-86 (127)
248 2a9o_A Response regulator; ess 50.3 37 0.0013 20.1 6.5 38 58-101 43-80 (120)
249 4fcw_A Chaperone protein CLPB; 50.0 19 0.00065 26.2 4.2 35 52-87 110-145 (311)
250 3t8y_A CHEB, chemotaxis respon 49.6 50 0.0017 21.3 6.5 38 58-101 69-106 (164)
251 1w4r_A Thymidine kinase; type 49.3 32 0.0011 24.3 5.0 52 58-116 89-150 (195)
252 1m3s_A Hypothetical protein YC 48.8 30 0.001 23.2 4.8 41 79-120 93-134 (186)
253 3cu5_A Two component transcrip 48.4 47 0.0016 20.7 5.8 40 58-102 47-86 (141)
254 4b4t_L 26S protease subunit RP 48.3 42 0.0014 26.6 6.1 68 49-121 263-343 (437)
255 1d2n_A N-ethylmaleimide-sensit 48.2 28 0.00095 24.9 4.8 57 52-108 116-182 (272)
256 2qzj_A Two-component response 48.1 34 0.0011 21.3 4.7 38 58-101 46-83 (136)
257 1tk9_A Phosphoheptose isomeras 48.0 28 0.00096 23.4 4.5 40 79-119 124-164 (188)
258 2p65_A Hypothetical protein PF 47.8 3.9 0.00013 27.1 0.0 46 59-104 114-163 (187)
259 1e9r_A Conjugal transfer prote 47.8 9.4 0.00032 29.7 2.2 44 60-107 279-322 (437)
260 1zgz_A Torcad operon transcrip 47.7 43 0.0015 20.0 6.8 39 58-102 44-82 (122)
261 2ftc_D Mitochondrial ribosomal 47.4 48 0.0016 22.9 5.6 50 48-101 73-125 (175)
262 3nhm_A Response regulator; pro 47.2 46 0.0016 20.2 5.7 43 57-102 44-86 (133)
263 1vim_A Hypothetical protein AF 47.1 35 0.0012 23.4 5.0 61 59-120 72-144 (200)
264 3syl_A Protein CBBX; photosynt 46.7 64 0.0022 23.2 6.7 41 60-102 130-178 (309)
265 3grc_A Sensor protein, kinase; 46.7 49 0.0017 20.4 6.1 46 57-105 47-92 (140)
266 1iqp_A RFCS; clamp loader, ext 46.5 19 0.00066 26.2 3.7 43 59-104 109-151 (327)
267 4b4t_J 26S protease regulatory 46.3 38 0.0013 26.7 5.5 56 50-105 231-299 (405)
268 2qp9_X Vacuolar protein sortin 45.8 73 0.0025 24.0 7.0 53 51-103 134-197 (355)
269 1ne7_A Glucosamine-6-phosphate 45.5 18 0.00062 26.8 3.4 41 41-81 200-255 (289)
270 2v1u_A Cell division control p 45.4 11 0.00036 28.3 2.2 44 60-103 130-177 (387)
271 1mb3_A Cell division response 45.4 46 0.0016 19.8 5.0 42 58-102 43-84 (124)
272 3gt7_A Sensor protein; structu 45.3 48 0.0016 21.0 5.2 40 58-100 49-88 (154)
273 2vo9_A EAD500, L-alanyl-D-glut 45.2 29 0.00099 24.0 4.2 30 70-100 30-59 (179)
274 2rjn_A Response regulator rece 44.4 57 0.002 20.5 5.9 41 58-103 49-89 (154)
275 1tmy_A CHEY protein, TMY; chem 44.4 48 0.0017 19.7 5.2 40 58-102 45-84 (120)
276 2wji_A Ferrous iron transport 44.3 62 0.0021 20.9 5.7 42 59-108 80-123 (165)
277 1jbe_A Chemotaxis protein CHEY 43.8 51 0.0018 19.8 5.1 41 58-101 47-87 (128)
278 1xhf_A DYE resistance, aerobic 43.7 50 0.0017 19.7 7.0 39 58-102 45-83 (123)
279 3gl9_A Response regulator; bet 43.4 43 0.0015 20.3 4.6 43 56-101 42-84 (122)
280 3f6c_A Positive transcription 43.3 54 0.0018 19.9 5.9 42 58-104 44-85 (134)
281 3m0z_A Putative aldolase; MCSG 42.6 8.4 0.00029 28.2 1.1 64 19-88 147-211 (249)
282 2r6a_A DNAB helicase, replicat 42.5 84 0.0029 24.6 7.1 55 41-100 266-320 (454)
283 3q6v_A Beta-lactamase; metallo 42.4 19 0.00066 24.9 3.1 38 61-102 35-72 (233)
284 2i2w_A Phosphoheptose isomeras 42.4 29 0.00099 24.1 4.0 40 79-119 145-185 (212)
285 1sbo_A Putative anti-sigma fac 42.1 54 0.0018 19.5 8.9 51 53-104 35-87 (110)
286 1jql_B DNA polymerase III, del 42.1 16 0.00055 23.8 2.4 43 56-101 72-114 (140)
287 4b4t_K 26S protease regulatory 42.0 57 0.002 25.8 6.0 56 50-105 255-323 (428)
288 1sxj_B Activator 1 37 kDa subu 41.8 17 0.00058 26.4 2.7 42 60-104 107-148 (323)
289 3kyj_B CHEY6 protein, putative 41.7 37 0.0013 21.2 4.2 35 60-100 60-94 (145)
290 4a3s_A 6-phosphofructokinase; 41.7 36 0.0012 25.8 4.6 47 50-101 175-222 (319)
291 3m6y_A 4-hydroxy-2-oxoglutarat 41.7 8.8 0.0003 28.5 1.1 63 19-87 170-233 (275)
292 3c3m_A Response regulator rece 41.7 60 0.0021 20.0 5.8 42 58-102 45-86 (138)
293 1s8n_A Putative antiterminator 41.6 76 0.0026 21.2 6.4 18 58-75 56-73 (205)
294 3t6k_A Response regulator rece 41.0 62 0.0021 19.9 5.9 43 57-102 45-87 (136)
295 2zay_A Response regulator rece 40.4 61 0.0021 20.1 5.1 41 59-102 51-91 (147)
296 1zh2_A KDP operon transcriptio 40.4 51 0.0017 19.5 4.6 38 58-101 43-80 (121)
297 1ls1_A Signal recognition part 40.2 0.7 2.4E-05 34.7 -5.2 42 78-123 24-65 (295)
298 1fs5_A Glucosamine-6-phosphate 39.8 22 0.00075 25.8 3.1 38 41-78 200-252 (266)
299 4b4t_M 26S protease regulatory 39.7 48 0.0017 26.3 5.2 68 49-121 263-343 (434)
300 2jjq_A Uncharacterized RNA met 39.5 86 0.0029 24.5 6.6 42 60-108 353-394 (425)
301 3lua_A Response regulator rece 39.4 63 0.0022 19.8 5.0 42 59-102 49-90 (140)
302 1h4x_A SPOIIAA, anti-sigma F f 39.0 65 0.0022 19.6 5.7 43 60-103 41-84 (117)
303 1ujc_A Phosphohistidine phosph 38.8 36 0.0012 22.5 3.8 26 79-104 86-111 (161)
304 1dbw_A Transcriptional regulat 38.5 62 0.0021 19.4 4.8 40 58-102 45-84 (126)
305 1xp2_A EAD500, PLY500, L-alany 38.1 45 0.0015 23.3 4.2 30 70-100 30-59 (179)
306 2j48_A Two-component sensor ki 37.3 61 0.0021 18.8 6.1 41 59-102 44-84 (119)
307 1a5t_A Delta prime, HOLB; zinc 37.3 14 0.00048 27.7 1.7 43 59-104 107-149 (334)
308 1jbk_A CLPB protein; beta barr 37.3 14 0.00049 24.1 1.6 46 59-104 114-162 (195)
309 3cz5_A Two-component response 37.2 76 0.0026 19.9 6.0 40 58-102 49-88 (153)
310 3eul_A Possible nitrate/nitrit 37.1 76 0.0026 19.8 5.6 40 58-102 59-98 (152)
311 4eyb_A Beta-lactamase NDM-1; m 36.7 37 0.0013 24.4 3.9 42 60-105 83-125 (270)
312 3hjg_A Putative alpha-ribazole 36.7 45 0.0015 23.1 4.2 27 77-103 125-151 (213)
313 3b2n_A Uncharacterized protein 36.5 73 0.0025 19.4 5.7 40 58-102 47-86 (133)
314 3k53_A Ferrous iron transport 36.5 4.6 0.00016 29.4 -1.1 48 69-116 144-191 (271)
315 3t15_A Ribulose bisphosphate c 36.4 59 0.002 23.8 5.0 14 58-71 97-110 (293)
316 3n53_A Response regulator rece 36.3 57 0.0019 20.1 4.4 42 58-102 44-85 (140)
317 1svm_A Large T antigen; AAA+ f 36.2 0.4 1.4E-05 37.6 -7.3 36 36-71 276-312 (377)
318 3k7i_B IHH, HHG-2, indian hedg 36.1 15 0.00052 25.8 1.5 33 58-90 69-101 (187)
319 3n70_A Transport activator; si 36.0 23 0.0008 22.8 2.5 40 60-102 76-115 (145)
320 3hrx_A Probable enoyl-COA hydr 36.0 65 0.0022 23.1 5.1 38 63-100 12-51 (254)
321 1srr_A SPO0F, sporulation resp 35.8 70 0.0024 19.1 6.4 39 58-101 45-83 (124)
322 1p6q_A CHEY2; chemotaxis, sign 35.7 51 0.0017 19.9 4.0 42 58-102 49-90 (129)
323 2hig_A 6-phospho-1-fructokinas 35.6 34 0.0012 27.7 3.7 49 49-103 277-327 (487)
324 1we3_A CPN60(groel); chaperoni 35.4 26 0.00088 28.7 3.1 42 58-105 213-254 (543)
325 2gwr_A DNA-binding response re 35.4 1.1E+02 0.0037 21.0 6.1 38 58-101 47-84 (238)
326 1k68_A Phytochrome response re 35.3 62 0.0021 19.6 4.4 40 59-101 54-93 (140)
327 3p8k_A Hydrolase, carbon-nitro 35.3 49 0.0017 24.1 4.4 71 54-124 47-127 (281)
328 2aiz_P Outer membrane protein 35.0 91 0.0031 20.1 5.9 46 57-102 25-70 (134)
329 3etn_A Putative phosphosugar i 34.9 70 0.0024 22.3 5.0 41 79-120 120-163 (220)
330 2rdm_A Response regulator rece 34.9 75 0.0026 19.1 6.1 38 60-102 50-88 (132)
331 1h2e_A Phosphatase, YHFR; hydr 34.8 56 0.0019 22.4 4.5 27 78-104 126-153 (207)
332 2a6p_A Possible phosphoglycera 34.8 49 0.0017 22.8 4.2 27 78-104 128-155 (208)
333 3cnb_A DNA-binding response re 34.8 78 0.0027 19.3 5.6 42 58-102 52-93 (143)
334 3lte_A Response regulator; str 34.7 76 0.0026 19.1 5.8 43 57-102 47-89 (132)
335 2qxy_A Response regulator; reg 34.7 80 0.0027 19.3 5.8 39 58-102 46-84 (142)
336 2i4r_A V-type ATP synthase sub 34.6 33 0.0011 21.5 2.9 28 76-103 36-63 (102)
337 3lxw_A GTPase IMAP family memb 34.5 49 0.0017 23.5 4.2 57 47-104 89-150 (247)
338 2z83_A Helicase/nucleoside tri 34.5 18 0.0006 28.6 1.9 68 41-113 2-70 (459)
339 3t6o_A Sulfate transporter/ant 34.4 82 0.0028 19.4 6.1 50 55-104 41-92 (121)
340 3tsm_A IGPS, indole-3-glycerol 34.4 1.4E+02 0.0047 22.0 8.0 51 53-109 135-185 (272)
341 1qkk_A DCTD, C4-dicarboxylate 34.0 81 0.0028 19.8 5.0 39 59-102 46-84 (155)
342 3mca_B Protein DOM34, elongati 33.9 1E+02 0.0035 24.0 6.1 63 41-107 290-354 (390)
343 3rrv_A Enoyl-COA hydratase/iso 33.8 67 0.0023 23.5 4.9 37 63-99 40-78 (276)
344 2oqr_A Sensory transduction pr 33.8 1.1E+02 0.0037 20.7 7.0 41 58-104 46-86 (230)
345 3r7a_A Phosphoglycerate mutase 33.8 49 0.0017 23.1 4.1 26 78-103 155-184 (237)
346 3h5i_A Response regulator/sens 33.6 84 0.0029 19.3 6.6 38 59-102 49-87 (140)
347 3ilh_A Two component response 33.5 83 0.0028 19.2 6.7 41 59-102 59-101 (146)
348 3eie_A Vacuolar protein sortin 33.4 76 0.0026 23.4 5.3 53 52-104 102-165 (322)
349 2f6q_A Peroxisomal 3,2-trans-e 33.4 73 0.0025 23.3 5.1 38 63-101 38-77 (280)
350 2a7k_A CARB; crotonase, antibi 33.3 87 0.003 22.3 5.4 31 63-93 12-44 (250)
351 3q9s_A DNA-binding response re 33.2 52 0.0018 23.2 4.2 40 56-101 77-116 (249)
352 3rsi_A Putative enoyl-COA hydr 33.2 78 0.0027 22.9 5.2 37 63-99 21-59 (265)
353 1xwi_A SKD1 protein; VPS4B, AA 33.1 1.4E+02 0.0049 22.0 6.8 53 51-103 96-159 (322)
354 2kpt_A Putative secreted prote 33.0 92 0.0031 20.6 5.1 36 64-100 16-51 (148)
355 1gml_A T-complex protein 1 sub 33.0 80 0.0027 21.5 4.9 47 58-105 25-90 (178)
356 3hv2_A Response regulator/HD d 33.0 91 0.0031 19.5 6.1 40 58-102 56-95 (153)
357 2xhz_A KDSD, YRBH, arabinose 5 33.0 71 0.0024 21.1 4.7 40 79-119 110-150 (183)
358 1a6d_A Thermosome (alpha subun 32.9 43 0.0015 27.3 4.0 47 58-105 231-296 (545)
359 2qvg_A Two component response 32.9 86 0.0029 19.2 5.4 41 59-102 58-98 (143)
360 3hdv_A Response regulator; PSI 32.9 84 0.0029 19.1 5.3 40 59-102 50-90 (136)
361 3cg4_A Response regulator rece 32.8 85 0.0029 19.1 5.1 42 58-102 49-90 (142)
362 3hno_A Pyrophosphate-dependent 32.7 35 0.0012 27.0 3.3 47 50-101 196-247 (419)
363 1jeo_A MJ1247, hypothetical pr 32.6 35 0.0012 22.8 3.0 38 79-118 96-134 (180)
364 2pbp_A Enoyl-COA hydratase sub 32.6 93 0.0032 22.3 5.5 27 64-90 18-46 (258)
365 3r9t_A ECHA1_1; ssgcid, seattl 32.5 83 0.0028 22.8 5.2 37 63-99 21-59 (267)
366 3a10_A Response regulator; pho 32.5 77 0.0026 18.5 6.0 40 58-102 43-82 (116)
367 1mj3_A Enoyl-COA hydratase, mi 32.4 84 0.0029 22.6 5.2 27 64-90 20-48 (260)
368 3kht_A Response regulator; PSI 32.3 82 0.0028 19.4 4.7 41 58-101 49-89 (144)
369 4b4t_H 26S protease regulatory 32.2 31 0.0011 27.8 3.0 58 48-105 290-360 (467)
370 2gno_A DNA polymerase III, gam 32.1 18 0.00061 27.1 1.5 42 60-104 82-123 (305)
371 3to5_A CHEY homolog; alpha(5)b 32.0 1E+02 0.0035 19.8 5.4 69 22-102 28-97 (134)
372 3fj1_A Putative phosphosugar i 31.9 76 0.0026 24.0 5.1 42 78-120 104-146 (344)
373 4e7p_A Response regulator; DNA 31.9 94 0.0032 19.3 5.5 41 57-102 63-103 (150)
374 3tlf_A Enoyl-COA hydratase/iso 31.6 76 0.0026 23.0 4.9 38 63-100 23-62 (274)
375 4b4t_I 26S protease regulatory 31.6 54 0.0018 26.2 4.2 67 50-121 265-344 (437)
376 1uiy_A Enoyl-COA hydratase; ly 31.5 1E+02 0.0034 22.0 5.5 27 64-90 12-40 (253)
377 3cfy_A Putative LUXO repressor 31.5 92 0.0032 19.1 5.3 40 58-102 46-85 (137)
378 1f89_A 32.5 kDa protein YLR351 31.4 43 0.0015 24.3 3.5 70 57-126 42-127 (291)
379 3eua_A Putative fructose-amino 31.3 86 0.0029 23.4 5.3 41 79-120 88-129 (329)
380 1mvo_A PHOP response regulator 31.3 89 0.003 18.9 6.6 39 58-101 45-83 (136)
381 3l3s_A Enoyl-COA hydratase/iso 31.3 1E+02 0.0034 22.3 5.5 38 63-100 19-57 (263)
382 3fdu_A Putative enoyl-COA hydr 31.1 90 0.0031 22.6 5.2 38 63-100 17-56 (266)
383 2d00_A V-type ATP synthase sub 31.1 49 0.0017 20.8 3.3 27 78-104 31-57 (109)
384 1lv7_A FTSH; alpha/beta domain 31.0 1.3E+02 0.0045 21.0 6.0 54 52-105 96-162 (257)
385 3td3_A Outer membrane protein 30.9 99 0.0034 19.3 5.0 39 63-101 15-53 (123)
386 3heb_A Response regulator rece 30.9 53 0.0018 20.6 3.6 42 58-102 57-98 (152)
387 1nzy_A Dehalogenase, 4-chlorob 30.8 92 0.0031 22.5 5.2 38 63-100 15-54 (269)
388 2ej5_A Enoyl-COA hydratase sub 30.8 93 0.0032 22.3 5.2 27 64-90 16-44 (257)
389 3c7t_A Ecdysteroid-phosphate p 30.6 60 0.0021 23.1 4.2 26 79-104 167-195 (263)
390 3hdg_A Uncharacterized protein 30.6 93 0.0032 18.9 5.1 40 58-102 49-88 (137)
391 3sho_A Transcriptional regulat 30.5 94 0.0032 20.6 5.0 41 79-120 101-142 (187)
392 2jk1_A HUPR, hydrogenase trans 30.4 95 0.0033 19.0 5.3 39 58-101 42-80 (139)
393 3mbk_A Ubiquitin-associated an 30.3 65 0.0022 23.0 4.3 25 79-103 168-195 (264)
394 3d4i_A STS-2 protein; PGM, 2H- 30.2 63 0.0021 23.2 4.2 26 79-104 177-205 (273)
395 3crn_A Response regulator rece 30.0 95 0.0032 18.8 6.0 40 58-102 45-84 (132)
396 2qr3_A Two-component system re 30.0 95 0.0032 18.8 4.9 39 58-101 45-88 (140)
397 4fzw_C 1,2-epoxyphenylacetyl-C 30.0 1E+02 0.0035 22.4 5.4 38 63-100 27-66 (274)
398 1qhf_A Protein (phosphoglycera 29.8 65 0.0022 22.6 4.2 27 78-104 155-184 (240)
399 3iog_A Beta-lactamase; hydrola 29.8 31 0.0011 23.6 2.4 37 62-102 33-69 (227)
400 1ex9_A Lactonizing lipase; alp 29.7 1.3E+02 0.0045 21.6 5.9 52 53-104 31-84 (285)
401 3trr_A Probable enoyl-COA hydr 29.6 88 0.003 22.5 4.9 38 63-100 19-58 (256)
402 3i47_A Enoyl COA hydratase/iso 29.6 1E+02 0.0035 22.4 5.3 31 63-93 16-48 (268)
403 1fzt_A Phosphoglycerate mutase 29.6 52 0.0018 22.6 3.5 27 78-104 137-166 (211)
404 2q35_A CURF; crotonase, lyase; 29.6 99 0.0034 22.0 5.1 20 70-89 24-43 (243)
405 1sfl_A 3-dehydroquinate dehydr 29.4 1.2E+02 0.004 21.7 5.5 58 40-102 75-134 (238)
406 2f48_A Diphosphate--fructose-6 29.3 72 0.0025 26.2 4.8 59 45-103 252-314 (555)
407 1a6d_B Thermosome (beta subuni 29.3 64 0.0022 26.2 4.5 47 58-105 232-297 (543)
408 3gow_A PAAG, probable enoyl-CO 29.3 90 0.0031 22.4 4.9 38 63-100 12-51 (254)
409 2w1v_A Nitrilase-2, nitrilase 29.2 66 0.0023 23.1 4.2 69 55-123 30-108 (276)
410 2iut_A DNA translocase FTSK; n 29.1 31 0.0011 28.5 2.5 41 63-104 346-389 (574)
411 3fkj_A Putative phosphosugar i 29.1 1E+02 0.0035 23.3 5.4 41 78-119 102-143 (347)
412 1k66_A Phytochrome response re 29.0 90 0.0031 19.1 4.4 17 59-75 61-77 (149)
413 3mm4_A Histidine kinase homolo 28.9 1.3E+02 0.0046 20.2 6.4 39 60-101 119-159 (206)
414 2qai_A V-type ATP synthase sub 28.8 49 0.0017 21.0 3.0 29 76-104 31-59 (111)
415 2dpm_A M.dpnii 1, protein (ade 28.8 1.7E+02 0.0057 21.5 6.4 50 61-111 188-251 (284)
416 3qxz_A Enoyl-COA hydratase/iso 28.8 97 0.0033 22.4 5.0 38 63-100 19-58 (265)
417 2yva_A DNAA initiator-associat 28.7 97 0.0033 20.8 4.8 40 79-119 123-166 (196)
418 3lke_A Enoyl-COA hydratase; ny 28.7 1E+02 0.0036 22.2 5.2 31 63-93 16-48 (263)
419 3vfd_A Spastin; ATPase, microt 28.7 1.2E+02 0.004 23.0 5.7 20 51-70 198-217 (389)
420 3t8b_A 1,4-dihydroxy-2-naphtho 28.6 98 0.0034 23.4 5.2 38 63-100 69-108 (334)
421 1dmg_A Ribosomal protein L4; a 28.6 82 0.0028 22.7 4.5 52 48-102 104-158 (225)
422 3cvj_A Putative phosphoheptose 28.5 57 0.002 23.0 3.7 40 79-119 122-173 (243)
423 2qv0_A Protein MRKE; structura 28.5 1E+02 0.0036 18.8 5.7 40 58-102 53-92 (143)
424 3qxi_A Enoyl-COA hydratase ECH 28.5 94 0.0032 22.5 4.9 37 63-99 27-65 (265)
425 3t3w_A Enoyl-COA hydratase; ss 28.3 94 0.0032 22.7 4.9 38 63-100 32-71 (279)
426 1e58_A Phosphoglycerate mutase 28.2 71 0.0024 22.5 4.2 26 78-103 157-185 (249)
427 4dad_A Putative pilus assembly 28.1 1.1E+02 0.0037 18.8 5.2 39 59-102 66-104 (146)
428 3cf2_A TER ATPase, transitiona 28.0 56 0.0019 28.1 4.0 57 50-106 287-353 (806)
429 3qmj_A Enoyl-COA hydratase, EC 28.0 98 0.0033 22.2 4.9 31 63-93 18-50 (256)
430 3pe8_A Enoyl-COA hydratase; em 27.9 94 0.0032 22.4 4.8 31 63-93 21-53 (256)
431 1i3c_A Response regulator RCP1 27.8 88 0.003 19.5 4.3 17 59-75 60-76 (149)
432 3n1g_B Desert hedgehog protein 27.8 89 0.0031 21.5 4.3 31 59-89 62-92 (170)
433 3q58_A N-acetylmannosamine-6-p 27.6 1.6E+02 0.0056 20.8 6.1 51 54-109 95-145 (229)
434 2pl1_A Transcriptional regulat 27.3 99 0.0034 18.1 5.6 40 58-102 42-81 (121)
435 3h1g_A Chemotaxis protein CHEY 27.3 1.1E+02 0.0036 18.5 4.9 40 60-102 51-90 (129)
436 1p2f_A Response regulator; DRR 27.3 1.4E+02 0.0049 19.9 5.7 38 59-101 42-79 (220)
437 3pea_A Enoyl-COA hydratase/iso 27.2 1.3E+02 0.0043 21.7 5.4 38 63-100 18-56 (261)
438 4fzw_A 2,3-dehydroadipyl-COA h 27.1 1E+02 0.0034 22.2 4.9 37 63-99 17-55 (258)
439 4hyl_A Stage II sporulation pr 27.0 1.1E+02 0.0037 18.5 5.4 49 54-104 36-85 (117)
440 3eod_A Protein HNR; response r 26.8 82 0.0028 18.9 3.9 40 57-101 48-87 (130)
441 1sxj_C Activator 1 40 kDa subu 26.7 56 0.0019 24.2 3.5 43 59-104 109-151 (340)
442 4f47_A Enoyl-COA hydratase ECH 26.6 1.2E+02 0.004 22.1 5.2 37 63-99 32-70 (278)
443 3gp3_A 2,3-bisphosphoglycerate 26.4 64 0.0022 22.9 3.6 26 79-104 165-193 (257)
444 3oc7_A Enoyl-COA hydratase; se 26.4 1.1E+02 0.0036 22.1 4.9 38 63-100 23-62 (267)
445 3g64_A Putative enoyl-COA hydr 26.4 1.1E+02 0.0036 22.3 4.9 37 63-99 29-67 (279)
446 2www_A Methylmalonic aciduria 26.4 39 0.0013 25.6 2.5 53 45-106 229-289 (349)
447 3qre_A Enoyl-COA hydratase, EC 26.3 1.2E+02 0.004 22.5 5.2 38 63-100 42-81 (298)
448 2poc_A D-fructose-6- PH, isome 26.3 1.1E+02 0.0037 23.2 5.1 42 78-120 110-152 (367)
449 4di1_A Enoyl-COA hydratase ECH 26.3 1.3E+02 0.0045 22.0 5.4 38 63-100 36-74 (277)
450 3qja_A IGPS, indole-3-glycerol 26.3 1.9E+02 0.0066 21.1 6.4 49 53-108 128-177 (272)
451 3nra_A Aspartate aminotransfer 26.3 98 0.0034 23.0 4.8 19 53-71 172-190 (407)
452 4dcu_A GTP-binding protein ENG 26.1 71 0.0024 25.0 4.1 55 47-106 89-144 (456)
453 1dci_A Dienoyl-COA isomerase; 26.1 1E+02 0.0034 22.4 4.7 38 63-100 16-55 (275)
454 1ys7_A Transcriptional regulat 25.9 1.5E+02 0.0053 19.9 5.8 39 58-101 49-87 (233)
455 1tue_A Replication protein E1; 25.9 87 0.003 22.4 4.2 58 59-120 102-178 (212)
456 3swx_A Probable enoyl-COA hydr 25.9 1.3E+02 0.0043 21.7 5.2 29 63-91 21-51 (265)
457 3h81_A Enoyl-COA hydratase ECH 25.9 1E+02 0.0034 22.6 4.7 29 63-91 37-67 (278)
458 2hhj_A Bisphosphoglycerate mut 25.7 66 0.0023 23.1 3.6 27 78-104 162-191 (267)
459 3zxn_A RSBS, anti-sigma-factor 25.7 1.3E+02 0.0044 18.9 7.6 54 55-109 36-91 (123)
460 2qsj_A DNA-binding response re 25.6 84 0.0029 19.6 3.9 39 59-102 49-87 (154)
461 1pjh_A Enoyl-COA isomerase; EC 25.4 1.1E+02 0.0039 22.2 4.9 36 63-98 21-58 (280)
462 3myb_A Enoyl-COA hydratase; ss 25.3 1E+02 0.0036 22.6 4.7 38 63-100 38-77 (286)
463 3r9q_A Enoyl-COA hydratase/iso 25.2 1.2E+02 0.004 22.0 4.9 38 63-100 23-62 (262)
464 3cg0_A Response regulator rece 25.1 1.2E+02 0.0041 18.3 6.7 39 58-102 52-91 (140)
465 2lpm_A Two-component response 25.0 72 0.0025 20.3 3.3 66 20-101 22-87 (123)
466 4hbz_A Putative phosphohistidi 25.0 74 0.0025 21.8 3.6 58 43-105 67-124 (186)
467 3sll_A Probable enoyl-COA hydr 25.0 1.2E+02 0.004 22.3 5.0 38 63-100 36-75 (290)
468 4eml_A Naphthoate synthase; 1, 24.7 1.2E+02 0.0041 22.1 4.9 38 63-100 22-61 (275)
469 1ojl_A Transcriptional regulat 24.7 79 0.0027 23.2 4.0 42 60-102 96-146 (304)
470 2r5f_A Transcriptional regulat 24.7 16 0.00053 26.8 0.0 30 42-71 229-259 (264)
471 3p9d_G T-complex protein 1 sub 24.7 1.1E+02 0.0039 24.8 5.2 47 58-105 236-301 (550)
472 3o1n_A 3-dehydroquinate dehydr 24.6 78 0.0027 23.4 3.9 57 40-103 111-169 (276)
473 4a8j_C Elongator complex prote 24.5 28 0.00095 26.1 1.4 42 59-103 148-196 (280)
474 1hzd_A AUH, AU-binding protein 24.5 92 0.0032 22.6 4.2 19 71-89 34-52 (272)
475 3kqf_A Enoyl-COA hydratase/iso 24.5 1.1E+02 0.0038 22.0 4.7 32 63-94 21-54 (265)
476 2xbl_A Phosphoheptose isomeras 24.5 84 0.0029 21.1 3.8 40 79-119 130-170 (198)
477 2uzf_A Naphthoate synthase; ly 24.3 1.4E+02 0.0047 21.7 5.2 28 64-91 26-55 (273)
478 2g1p_A DNA adenine methylase; 24.2 2.1E+02 0.0071 20.9 6.2 49 62-111 176-238 (278)
479 3fdb_A Beta C-S lyase, putativ 24.1 1.1E+02 0.0038 22.3 4.8 17 54-70 144-160 (377)
480 3jte_A Response regulator rece 24.1 1.3E+02 0.0044 18.3 6.1 40 58-102 47-86 (143)
481 1kp8_A Groel protein; chaperon 24.0 30 0.001 28.3 1.6 42 58-105 214-255 (547)
482 1qvr_A CLPB protein; coiled co 24.0 40 0.0014 28.9 2.4 33 54-87 653-686 (854)
483 3bs4_A Uncharacterized protein 23.9 2.1E+02 0.0072 20.8 7.2 52 66-117 148-212 (260)
484 3lao_A Enoyl-COA hydratase/iso 23.9 1.3E+02 0.0044 21.6 4.9 37 63-99 24-63 (258)
485 2gnp_A Transcriptional regulat 23.9 17 0.00057 26.7 0.0 30 42-71 226-256 (266)
486 3oon_A Outer membrane protein 23.8 1.3E+02 0.0045 18.7 4.5 39 64-102 19-57 (123)
487 3fxa_A SIS domain protein; str 23.8 78 0.0027 21.4 3.6 40 79-119 106-146 (201)
488 2b4a_A BH3024; flavodoxin-like 23.7 1.3E+02 0.0044 18.2 4.7 39 59-102 59-98 (138)
489 3gbx_A Serine hydroxymethyltra 23.6 1.3E+02 0.0044 22.4 5.1 37 53-94 161-198 (420)
490 3p9d_A T-complex protein 1 sub 23.6 83 0.0029 25.7 4.2 44 60-104 241-303 (559)
491 3t89_A 1,4-dihydroxy-2-naphtho 23.5 1.3E+02 0.0044 22.1 4.9 38 63-100 40-79 (289)
492 1iok_A Chaperonin 60; chaperon 23.4 18 0.00063 29.6 0.2 42 58-105 215-256 (545)
493 3c97_A Signal transduction his 23.2 1.3E+02 0.0046 18.2 6.8 42 58-102 52-96 (140)
494 1nri_A Hypothetical protein HI 23.2 1.4E+02 0.0049 22.0 5.1 40 79-119 154-194 (306)
495 2j5i_A P-hydroxycinnamoyl COA 23.1 1.2E+02 0.004 22.1 4.6 7 70-76 67-73 (276)
496 1x92_A APC5045, phosphoheptose 23.1 1.3E+02 0.0045 20.1 4.7 40 79-119 127-170 (199)
497 3p5m_A Enoyl-COA hydratase/iso 23.1 99 0.0034 22.2 4.1 37 63-99 18-56 (255)
498 1rii_A 2,3-bisphosphoglycerate 23.1 99 0.0034 22.3 4.2 27 78-104 157-186 (265)
499 3igs_A N-acetylmannosamine-6-p 23.0 2E+02 0.007 20.3 6.1 51 54-109 95-145 (232)
500 2qni_A AGR_C_517P, uncharacter 23.0 1E+02 0.0035 21.5 4.1 27 78-104 138-166 (219)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-39 Score=254.43 Aligned_cols=142 Identities=37% Similarity=0.564 Sum_probs=124.6
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++....+.+ ...+++.++++.+|+. ++.++++.+|||||||||+|||||+++|++|||||||+|||+.++
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 7899999986554432 2245688899999996 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..++++|++++++.|+|||+||||++++.++||||++|++|++++.|+++++.. +.+++...|+.
T Consensus 200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~ 265 (366)
T 3tui_C 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265 (366)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 999999999987779999999999999999999999999999999999988754 45566665543
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.6e-38 Score=249.38 Aligned_cols=141 Identities=32% Similarity=0.459 Sum_probs=123.0
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|++..++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+
T Consensus 96 tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 96 TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 7899999987654332 2245688999999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC-CCHHHHHHh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 142 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 142 (146)
..+.+.+.++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++... .......|.
T Consensus 175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~~~ 239 (359)
T 3fvq_A 175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFI 239 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHHhc
Confidence 9999999888777799999999999999999999999999999999999987643 334444444
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-38 Score=251.68 Aligned_cols=142 Identities=32% Similarity=0.493 Sum_probs=125.3
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|++..++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~ 169 (381)
T 3rlf_A 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (381)
T ss_dssp CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 78999999876554322 245688999999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +.+.+...|++
T Consensus 170 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 170 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 999999999987779999999999999999999999999999999999998754 44556666653
No 4
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-38 Score=236.62 Aligned_cols=141 Identities=33% Similarity=0.436 Sum_probs=119.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||+||+.++...++.....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.
T Consensus 86 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~ 164 (240)
T 2onk_A 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp CHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred cHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 68999998754332212245688899999996 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHHHh
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+.+.|++++++.|+|||++|||++++..+||++++|++|++++.|+++++..........|+
T Consensus 165 ~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 226 (240)
T 2onk_A 165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCchHHHHHHh
Confidence 99999999765699999999999999999999999999999999999887532233333443
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.4e-38 Score=238.75 Aligned_cols=131 Identities=29% Similarity=0.415 Sum_probs=117.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLAN------EPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD 74 (146)
||+||+.++...+......+++.++++.+++. ++.++++.+|||||||||+|||||++ +|++|||||||+|||
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD 179 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179 (266)
T ss_dssp BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCC
T ss_pred CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCC
Confidence 68999998765443333456788999999996 57899999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.++..+.+.|++++++.|+|||+||||++++..+||||++|++|++++.|+++++..
T Consensus 180 ~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 180 LYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9999999999999987656899999999999999999999999999999999988754
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.4e-38 Score=241.26 Aligned_cols=131 Identities=29% Similarity=0.473 Sum_probs=116.5
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++....+.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 68999998765443321 235688899999995 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..+++.|++++++.|+|||+||||++++..+||||++|++|++++.|+++++..
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999973449999999999999999999999999999999999988754
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-37 Score=244.65 Aligned_cols=142 Identities=32% Similarity=0.486 Sum_probs=123.4
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 103 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 181 (355)
T 1z47_A 103 TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181 (355)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 78999999865443221 245688999999995 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 182 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 182 RELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 999999999987669999999999999999999999999999999999998754 33445555553
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.3e-37 Score=243.88 Aligned_cols=142 Identities=32% Similarity=0.429 Sum_probs=123.3
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r 176 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 78999999865443221 245688999999995 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 177 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999999999976669999999999999999999999999999999999998754 33445555553
No 9
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.6e-37 Score=244.34 Aligned_cols=141 Identities=30% Similarity=0.524 Sum_probs=123.4
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||+||+.|+...++.+.. +++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+..
T Consensus 88 tv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~ 165 (348)
T 3d31_A 88 NVKKNLEFGMRMKKIKDP-KRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165 (348)
T ss_dssp CHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 789999998654433222 6788999999996 68899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 166 l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 9999999987679999999999999999999999999999999999998754 33345555554
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-37 Score=244.18 Aligned_cols=142 Identities=30% Similarity=0.447 Sum_probs=123.3
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 91 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (359)
T 2yyz_A 91 TVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169 (359)
T ss_dssp CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 78999999865443221 235688999999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 170 MIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999977669999999999999999999999999999999999998754 33445555553
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.3e-37 Score=231.86 Aligned_cols=130 Identities=32% Similarity=0.483 Sum_probs=109.8
Q ss_pred ChHHHhhcCcccc---CCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCH
Q 046954 1 TVADNIRYGPQLR---GKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 1 tv~eni~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 75 (146)
||+||+.++.... ... ...+++.++++.+++.....++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 6899998864332 111 12345778899999964345899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
.++..+.+.|++++++.|+|||+||||++. ..+||||++|++|++++.++++++.
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999999976569999999999985 4899999999999999998887653
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.1e-37 Score=243.80 Aligned_cols=142 Identities=27% Similarity=0.415 Sum_probs=122.6
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 99 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 177 (372)
T 1v43_A 99 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177 (372)
T ss_dssp CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 78999999865443322 235688899999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|++++++.|.|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 178 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 178 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999987669999999999999999999999999999999999998754 33445555543
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.5e-37 Score=244.26 Aligned_cols=142 Identities=30% Similarity=0.472 Sum_probs=123.2
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 175 (372)
T 1g29_1 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175 (372)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 78999999865443321 235688899999995 688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 176 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 999999999987669999999999999999999999999999999999998754 33445555543
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.3e-37 Score=244.45 Aligned_cols=142 Identities=36% Similarity=0.509 Sum_probs=123.2
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.|+...++.+. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+..+
T Consensus 91 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (362)
T 2it1_A 91 TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169 (362)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 78999999865443321 235688899999996 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
..+.+.|++++++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +...+...|++
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 999999999977669999999999999999999999999999999999998754 33345555543
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-36 Score=231.44 Aligned_cols=140 Identities=35% Similarity=0.506 Sum_probs=118.6
Q ss_pred ChHHHhhcCc-cccCCC--ccHHHHHHHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH
Q 046954 1 TVADNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 76 (146)
Q Consensus 1 tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 76 (146)
||+||+.++. ..++.. ...+++.++++.+++. ++ .++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 187 (262)
T 1b0u_A 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187 (262)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 6899998853 222222 1234678899999996 57 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
++..+.+.|++++++ |+|||+||||++++..+||+|++|++|++++.|+++++.. +.......|+
T Consensus 188 ~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 188 LVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 999999999999765 9999999999999999999999999999999999988753 3334444443
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-36 Score=230.81 Aligned_cols=140 Identities=38% Similarity=0.534 Sum_probs=118.9
Q ss_pred ChHHHhhcCc-cccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
||+||+.++. ...+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 6899998853 222222 1234678899999995 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHh
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 142 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~ 142 (146)
+..+.+.|++++++ |+|||++|||++++..+||+|++|++|++++.|+++++.. +.......|+
T Consensus 195 ~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
T 2olj_A 195 VGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 259 (263)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHHH
Confidence 99999999999765 9999999999999999999999999999999999988753 3334444443
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-36 Score=229.80 Aligned_cols=127 Identities=24% Similarity=0.468 Sum_probs=112.5
Q ss_pred ChHHHhhcCccc--cC-----------CC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954 1 TVADNIRYGPQL--RG-----------KK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL 65 (146)
Q Consensus 1 tv~eni~~~~~~--~~-----------~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 65 (146)
||.||+.++... .+ .. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll 176 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIV 176 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 689999886532 11 11 1234678899999995 67899999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccc
Q 046954 66 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 129 (146)
Q Consensus 66 lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 129 (146)
|||||+|||+.++..+.+.|++++++ |+|||++|||++++..+||+|++|++|++++.|++++
T Consensus 177 LDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 177 MDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999764 9999999999999999999999999999999999887
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.1e-36 Score=223.04 Aligned_cols=123 Identities=34% Similarity=0.458 Sum_probs=108.8
Q ss_pred ChHHHhhcCccccCCC--ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++...++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 98 TALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 6889998865433322 1235678899999996 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
..+.+.|++++++ |+|||++|||++.+ .+||++++|++|++++.|+
T Consensus 177 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 177 KRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 9999999999765 99999999999987 8999999999999998886
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-36 Score=227.16 Aligned_cols=129 Identities=26% Similarity=0.425 Sum_probs=113.8
Q ss_pred ChHHHhhcCccccCCCc--cHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++...++... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 104 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 182 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182 (256)
T ss_dssp BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHH
Confidence 68899988654333221 134678899999995 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|+++++ .|+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus 183 ~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 183 REVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 999999999975 4999999999999999999999999999999999988774
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.8e-36 Score=223.80 Aligned_cols=130 Identities=29% Similarity=0.431 Sum_probs=112.4
Q ss_pred ChHHHhhcCccccC-CCccHHHHHHHHHHcC-CChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRG-KKLTENEVYKLLSLAD-LDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~-~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++..... .....+.+.++++.++ +. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 175 (240)
T 1ji0_A 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175 (240)
T ss_dssp BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 68999988642211 1122345778889984 84 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
..+.+.|+++++ .|+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus 176 ~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 176 SEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999975 59999999999999999999999999999999999887753
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.9e-36 Score=226.57 Aligned_cols=130 Identities=27% Similarity=0.358 Sum_probs=114.5
Q ss_pred ChHHHhhcCcccc-CCCccHHHHHHHHHHcCCCh-hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLR-GKKLTENEVYKLLSLADLDS-SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
||+||+.++.... ......+++.++++.+|+.. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 174 (266)
T 2yz2_A 95 RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174 (266)
T ss_dssp SHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHH
Confidence 6899999875332 11223567889999999951 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
..+.+.|++++++ |+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus 175 ~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 175 TDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999765 999999999999999999999999999999999887764
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-35 Score=223.64 Aligned_cols=129 Identities=27% Similarity=0.357 Sum_probs=113.0
Q ss_pred ChHHHhhcCcccc-C----CC-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQLR-G----KK-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~~-~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+||+.++.... + .. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 6899999875321 1 11 1235678899999995 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.++..+.+.|.+++++.|+|||++|||++++..+||++++|++|+ ++.|+++++.
T Consensus 161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999976558999999999999999999999999999 8999888764
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.1e-35 Score=220.45 Aligned_cols=127 Identities=25% Similarity=0.352 Sum_probs=113.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC-------EEEeeCCCCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE-------VLLLDEPTSAL 73 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~-------llllDEPt~~L 73 (146)
||+||+.++... .. ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+ +|||||||+||
T Consensus 89 tv~e~l~~~~~~-~~--~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 89 PVWHYLTLHQHD-KT--RTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp BHHHHHHTTCSS-TT--CHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred cHHHHHHHhhcc-CC--cHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence 688999886321 11 256788899999995 57899999999999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 74 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 74 D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+.++..+.+.|++++++ |+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus 165 D~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 165 DVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999765 9999999999999999999999999999999999887753
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-35 Score=226.74 Aligned_cols=130 Identities=28% Similarity=0.366 Sum_probs=112.6
Q ss_pred ChHHHhhcCccc----cCC-C-ccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQL----RGK-K-LTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~----~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||+||+.++... ++. . ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD 193 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 688999886421 111 1 1234678899999995 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeE--EEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTI--VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tv--i~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
+.+++.+.+.|++++++ |+|| |+||||++++..+||+|++|++|++++.|+++++..
T Consensus 194 ~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 194 FIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999765 9999 999999999999999999999999999999887643
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-34 Score=220.64 Aligned_cols=135 Identities=27% Similarity=0.354 Sum_probs=108.8
Q ss_pred ChHHHhhcCccccCC-Ccc-----HHHHHHHHHHc--CCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 046954 1 TVADNIRYGPQLRGK-KLT-----ENEVYKLLSLA--DLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA 72 (146)
Q Consensus 1 tv~eni~~~~~~~~~-~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~ 72 (146)
||+||+.++...... ... ...+.++++.+ |+. .+.++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 108 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~ 186 (271)
T 2ixe_A 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186 (271)
T ss_dssp BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 689999987532211 000 01134556666 563 456788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 73 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 73 LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
||+.++..+.+.|++++++.|+|||+||||++.+.. ||+|++|++|++++.|+++++......+
T Consensus 187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 250 (271)
T 2ixe_A 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMERGGCY 250 (271)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCcHHH
Confidence 999999999999999865458999999999998865 9999999999999999998875433333
No 26
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.1e-34 Score=219.88 Aligned_cols=126 Identities=35% Similarity=0.506 Sum_probs=105.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.++... ...+++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 143 Tv~eNi~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt 218 (306)
T 3nh6_A 143 TIADNIRYGRVT----AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT 218 (306)
T ss_dssp EHHHHHHTTSTT----CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred cHHHHHHhhccc----CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 689999987532 12345556666665531 1234556799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
++||+.+...+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 219 s~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 219 SALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp SCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999863 7999999999999976 999999999999999999987654
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.2e-33 Score=213.05 Aligned_cols=125 Identities=35% Similarity=0.509 Sum_probs=106.2
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC-----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++.. ....+++.++++.+++. ++.++ ++.+|||||||||+|||||+.+|++||||||
T Consensus 98 tv~enl~~~~~----~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEP 172 (247)
T 2ff7_A 98 SIIDNISLANP----GMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA 172 (247)
T ss_dssp BHHHHHTTTCT----TCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred cHHHHHhccCC----CCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 68899988631 12345667778888874 34443 4589999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+|||+.++..+.+.|+++. + |+|||+|||+++.+. .||++++|++|++++.|+++++...
T Consensus 173 ts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 173 TSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp CSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHTS
T ss_pred cccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999994 4 999999999999886 5999999999999999999887543
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.4e-34 Score=218.47 Aligned_cols=127 Identities=27% Similarity=0.363 Sum_probs=104.7
Q ss_pred ChHHHhhcCccc-cCC--C--ccHHHHHHHHHHcCCChhhhcCCcCC-CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 046954 1 TVADNIRYGPQL-RGK--K--LTENEVYKLLSLADLDSSFLSKTGAE-ISVGQAQRVALARTLANEPEVLLLDEPTSALD 74 (146)
Q Consensus 1 tv~eni~~~~~~-~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 74 (146)
||.||+.++... .+. . ...+++.++++.+++..++.++++.+ |||||||||+|||||+.+|++|||||||+|||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 578888775421 111 1 11345778999999953578899999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh-cCeEEEEECCEEEEeeCcc
Q 046954 75 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPD 128 (146)
Q Consensus 75 ~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 128 (146)
+.++..+.+.|+++++ .|+|||++|||++++..+ ||++++|++|++++.|+++
T Consensus 176 ~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 176 IDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999864 599999999999999888 5999999999999999876
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-34 Score=217.35 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=110.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.||+.++...+ ....+++.++++.+++..++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 89 tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (263)
T 2pjz_A 89 TVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166 (263)
T ss_dssp BHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred cHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence 6889998865332 23456788999999995247899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcC-eEEEEECCEEEEeeCccccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNGEIVEVLKPDLLS 131 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d-~v~~l~~G~i~~~g~~~~~~ 131 (146)
+.+.|++++ . |||++|||++++.++|| ++++|++|++++.|+++++.
T Consensus 167 l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 167 ISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999873 2 99999999999999999 99999999999999987764
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.2e-34 Score=217.21 Aligned_cols=110 Identities=24% Similarity=0.342 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCChhhhcCCcC-CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGA-EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~-~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
+++.++++.+++...+.++++. +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+
T Consensus 141 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvii 219 (267)
T 2zu0_C 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFII 219 (267)
T ss_dssp HHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEE
T ss_pred HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE
Confidence 4577899999995346788887 5999999999999999999999999999999999999999999999864 4999999
Q ss_pred EecCHHHHHhh-cCeEEEEECCEEEEeeCcccc
Q 046954 99 VSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 99 itH~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+|||++++..+ ||++++|++|++++.|+++++
T Consensus 220 vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 220 VTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp ECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred EeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 99999999886 899999999999999998765
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.2e-33 Score=210.96 Aligned_cols=129 Identities=32% Similarity=0.484 Sum_probs=106.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh-----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF-----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++.. . ...+++.++++.+++. ++ .++++.+|||||||||+|||||+.+|++||||||
T Consensus 108 tv~enl~~~~~--~--~~~~~~~~~l~~~~l~-~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 182 (260)
T 2ghi_A 108 TIKYNILYGKL--D--ATDEEVIKATKSAQLY-DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182 (260)
T ss_dssp EHHHHHHTTCT--T--CCHHHHHHHHHHTTCH-HHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CHHHHHhccCC--C--CCHHHHHHHHHHhCCH-HHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 68899988632 1 1244566777777763 22 2356789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
|+|||+.++..+.+.|++++ + |+|||+|||+++.+. .||+|++|++|++++.|+++++......+
T Consensus 183 ts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 247 (260)
T 2ghi_A 183 TSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKLNGEY 247 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred cccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 99999999999999999985 3 899999999999885 59999999999999999998875433333
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-33 Score=209.96 Aligned_cols=125 Identities=34% Similarity=0.539 Sum_probs=106.2
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++... ....+++.++++.+++. ++.+ +++.+|||||||||+|||||+++|++||||||
T Consensus 91 tv~enl~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP 166 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166 (243)
T ss_dssp EHHHHTTSCTTS---CSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred cHHHHHhhhccC---CCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 688999886321 12345677888888875 3443 34679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+|||+.++..+.+.|++++ + |+|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 167 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 167 TASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp SCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999986 4 999999999999885 599999999999999999887754
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.98 E-value=6.5e-33 Score=220.90 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=114.1
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCC-----------CChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAE-----------ISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.+.. ....+++.++++.+++. ++.++++.+ |||||||||+|||||+.+|++||||||
T Consensus 109 tv~enl~~~~-----~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 109 TFRKNLDPNA-----AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182 (390)
T ss_dssp EHHHHHCTTC-----CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred CHHHHhhhcc-----ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5788886432 12356788899999995 688999988 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc-CCCHHHHHHhh
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 143 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 143 (146)
|++||+..+..+.+.|+++. .++|+|++|||++.+ ..||||++|++|+|++.|+++++.. +.+.+...|++
T Consensus 183 ts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 183 SAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp HHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred ccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 99999999999999999864 389999999998655 5699999999999999999999864 44556666654
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.98 E-value=8.1e-32 Score=200.91 Aligned_cols=132 Identities=23% Similarity=0.376 Sum_probs=100.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChh----------hhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.++... ...+....++.+++... ..++++.+|||||||||+|||||+.+|+++||||||
T Consensus 84 tv~enl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 84 TIKENIIFGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp CHHHHHHTTSCC-----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred CHHHHhhccCCc-----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 789999886421 12223344444454210 122346899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHHHHH
Q 046954 71 SALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 140 (146)
Q Consensus 71 ~~LD~~~~~~~~~~-l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 140 (146)
+|||+.++..+.+. +.++. + |+|||++||+++++. .||++++|++|++++.|+++++......+...
T Consensus 159 s~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 226 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQNLQPDFSSK 226 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 99999999999997 45553 3 899999999999886 59999999999999999998875433334333
No 35
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=3.2e-31 Score=220.77 Aligned_cols=127 Identities=35% Similarity=0.557 Sum_probs=106.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++.... ....++++.++++.+++. ++.+ +++.+||||||||++|||||+++|+++|||||
T Consensus 433 tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEp 510 (595)
T 2yl4_A 433 SIAENIAYGADDP-SSVTAEEIQRVAEVANAV-AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEA 510 (595)
T ss_dssp BHHHHHHTTSSST-TTSCHHHHHHHHHHTTCH-HHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CHHHHHhhcCCCc-cccCHHHHHHHHHHcCCH-HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 6899999875321 113456788888888874 2322 23589999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|++||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 511 ts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 511 TSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp CSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC---
T ss_pred ccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999864 899999999999886 599999999999999999998754
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=2.3e-31 Score=221.14 Aligned_cols=127 Identities=35% Similarity=0.502 Sum_probs=108.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcC-----------CcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSK-----------TGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
|++||+.++.. ....++++.++++.+++. ++.++ ++.+||||||||++|||||+++|+++|||||
T Consensus 432 tv~eni~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEp 507 (582)
T 3b5x_A 432 TIANNIAYAAE---GEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEA 507 (582)
T ss_pred cHHHHHhccCC---CCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 78999998641 112356677888888774 33333 4579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|++||+.+++.+.+.|+++. + |+|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 508 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 508 TSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred cccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999985 3 899999999999886 69999999999999999999886543
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=3.7e-32 Score=203.75 Aligned_cols=99 Identities=27% Similarity=0.445 Sum_probs=87.5
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHH---HHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV---KLKKKHGMTIVMVSHSIKQIQRIADV 112 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~---~l~~~~g~tvi~itH~~~~~~~~~d~ 112 (146)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|. ++. .|+|||++||+++.+. .||+
T Consensus 121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~-~~d~ 197 (237)
T 2cbz_A 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLP-QVDV 197 (237)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGG-GSSE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHH-hCCE
Confidence 467889999999999999999999999999999999999999999999985 443 3899999999999874 7999
Q ss_pred EEEEECCEEEEeeCccccccCCCHH
Q 046954 113 VCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 113 v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
+++|++|++++.|+++++......+
T Consensus 198 v~~l~~G~i~~~g~~~~~~~~~~~~ 222 (237)
T 2cbz_A 198 IIVMSGGKISEMGSYQELLARDGAF 222 (237)
T ss_dssp EEEEETTEEEEEECHHHHHHHTSHH
T ss_pred EEEEeCCEEEEeCCHHHHhhccHHH
Confidence 9999999999999998875443333
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=3e-31 Score=220.77 Aligned_cols=126 Identities=30% Similarity=0.509 Sum_probs=104.7
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.++... ..++++.++++..++.+ ...++++.+||||||||++|||||+++|+++||||||
T Consensus 432 tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp EHHHHHTTTCSS----CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred cHHHHHhccCCC----CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 689999886421 23344555555554421 2345678899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
++||+.+.+.+.+.++++. .|+|+|+|||+++.+. .||||++|++|++++.|+++++...
T Consensus 508 s~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 508 SSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999974 3899999999999885 7999999999999999999988654
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=3.2e-31 Score=220.17 Aligned_cols=129 Identities=35% Similarity=0.486 Sum_probs=106.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++.. ...++++.++++..++. ++.+ +++.+||||||||++|||||+++|+++|||||
T Consensus 430 tv~eni~~~~~----~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEp 504 (578)
T 4a82_A 430 TVKENILLGRP----TATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504 (578)
T ss_dssp BHHHHHGGGCS----SCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 68999988632 12345667777777663 2222 34568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
|++||+.+...+.+.++++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++......+
T Consensus 505 ts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~~~~~~~ 569 (578)
T 4a82_A 505 TSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQGAY 569 (578)
T ss_dssp TTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred cccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 99999999999999999885 3799999999999985 49999999999999999999986544433
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=2.8e-31 Score=220.68 Aligned_cols=126 Identities=33% Similarity=0.476 Sum_probs=107.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++.. ....++++.++++.+++. ++.+ +++.+||||||||++|||||+++|+++|||||
T Consensus 432 tv~eni~~~~~---~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEp 507 (582)
T 3b60_A 432 TVANNIAYART---EEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507 (582)
T ss_dssp BHHHHHHTTTT---SCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred CHHHHHhccCC---CCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 68999998641 112456678888888874 3333 34689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|++||+.++..+.+.++++. + |+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 508 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 508 TSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp TSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999985 3 899999999999885 6999999999999999999987543
No 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-31 Score=222.93 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=104.5
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
...+.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||+
T Consensus 445 ~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 445 PQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp HHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45567889999996 57899999999999999999999999999999999999999999999999999997666999999
Q ss_pred EecCHHHHHhhcCeEEEEEC--CEEEEeeCcccccc
Q 046954 99 VSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSE 132 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 132 (146)
||||++++..+||||++|++ |+++..|+|+++..
T Consensus 524 vtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 524 VEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp ECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999999999999999996 89999999988754
No 42
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=5.6e-31 Score=221.81 Aligned_cols=135 Identities=30% Similarity=0.409 Sum_probs=109.6
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPIS 77 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~ 77 (146)
||.||+.+.... ....+..+.+..+++.....++++.+|||||||||+|||||+++| ++|||||||+|||+.+
T Consensus 506 tv~e~l~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~ 581 (670)
T 3ux8_A 506 TVEDALDFFASI----PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 581 (670)
T ss_dssp BHHHHHHHTTTC----HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH
T ss_pred CHHHHHHHHHHh----hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH
Confidence 355666554211 122456677888898644568899999999999999999999887 5999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRF 141 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~ 141 (146)
+..+.++|+++++ .|+|||+||||++.+ .+||||++| ++|+|++.|+++++......+...|
T Consensus 582 ~~~i~~~l~~l~~-~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~~~ 649 (670)
T 3ux8_A 582 IARLLDVLHRLVD-NGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 649 (670)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-CCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccHHHHH
Confidence 9999999999975 499999999999987 569999999 8999999999998865444444444
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.4e-31 Score=221.71 Aligned_cols=129 Identities=33% Similarity=0.555 Sum_probs=106.8
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCC-----------cCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKT-----------GAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++... ..++++.++++.+++. ++.++. +.+||||||||++|||||+++|+++|||||
T Consensus 444 tv~eni~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEp 518 (598)
T 3qf4_B 444 TVKENLKYGNPG----ATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518 (598)
T ss_dssp BHHHHHHSSSTT----CCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 689999986321 1234566677776663 334443 368999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCCHH
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 137 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 137 (146)
|++||+.+...+.+.++++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++......+
T Consensus 519 ts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 583 (598)
T 3qf4_B 519 TSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFY 583 (598)
T ss_dssp CTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHTTCHH
T ss_pred ccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCCCHH
Confidence 99999999999999999985 38999999999999865 9999999999999999999986544333
No 44
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=2e-32 Score=202.51 Aligned_cols=117 Identities=24% Similarity=0.346 Sum_probs=99.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.||+.++...++.....+++.++++.+++. ++ ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~ 171 (214)
T 1sgw_A 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 171 (214)
T ss_dssp BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHH
T ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence 68899988644332112356788899999996 46 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
+.+.|++++++ |+|||++||+++++..+||+++++ .|+|
T Consensus 172 l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 172 VLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999754 899999999999999999998865 5555
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.3e-30 Score=215.00 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=105.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
||.+|+.+..... .......+.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 346 tv~~~l~~~~~~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~ 423 (538)
T 3ozx_A 346 TVQQYLENASKDA-LSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI 423 (538)
T ss_dssp BHHHHHHHHCSST-TCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred CHHHHHHHhhhhc-cchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 5677876532111 111234567788999995 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC--CEEEEeeCccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDL 129 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~ 129 (146)
+.++|++++++.|+|||+||||++++..+||||++|++ |.+...+++..
T Consensus 424 i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 424 VAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHH
Confidence 99999999876799999999999999999999999986 44555555543
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=1.9e-30 Score=218.56 Aligned_cols=116 Identities=24% Similarity=0.388 Sum_probs=100.6
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.+++.+|+.....++++.+|||||||||+|||||+++|+ +|||||||+|||+.++..+.++|+++++ .|.|||+|||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtH 262 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEH 262 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeC
Confidence 358889986434689999999999999999999999998 9999999999999999999999999975 5999999999
Q ss_pred CHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHH
Q 046954 102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRF 141 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~ 141 (146)
|++.+. .||+|++| ++|++++.|+++++..........+
T Consensus 263 d~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 307 (670)
T 3ux8_A 263 DEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY 307 (670)
T ss_dssp CHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred CHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence 999765 59999999 8999999999988755433343333
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=5e-30 Score=197.35 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=94.9
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhh-----------cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------SKTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+. +... ....+..+++.+++. +.. ++++.+|||||||||+|||||+.+|++||||||
T Consensus 114 tv~enl~-~~~~-----~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 114 TIKENII-GVSY-----DEYRYRSVIKACQLE-EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp BHHHHHH-TTCC-----CHHHHHHHHHHTTCH-HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred cHHHHhh-Cccc-----chHHHHHHHHHhChH-HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 6788987 4211 122334455555553 222 234579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccccc
Q 046954 70 TSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l-~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
|+|||+.++..+.+.+ .++. + |+|||++||+++.+. .||++++|++|++++.|+++++..
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~-~-~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhh-C-CCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999974 4553 3 899999999999885 599999999999999999887743
No 48
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=7.9e-30 Score=220.08 Aligned_cols=122 Identities=29% Similarity=0.431 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
.++.++++.+|+.....++++.+|||||||||+|||||+.+| ++|||||||+|||+...+.+++.|.++++ .|.||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TV 861 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTV 861 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 456778999999643467889999999999999999999875 79999999999999999999999999975 59999
Q ss_pred EEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHhh
Q 046954 97 VMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 143 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 143 (146)
|+||||++.+. .||+|++| ++|+|++.|+++++.....+++..|++
T Consensus 862 IvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~ 913 (916)
T 3pih_A 862 IVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913 (916)
T ss_dssp EEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHHT
T ss_pred EEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHHH
Confidence 99999999885 49999999 899999999999987665678777764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=6.1e-30 Score=211.07 Aligned_cols=112 Identities=26% Similarity=0.355 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||+
T Consensus 379 ~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~ 457 (538)
T 1yqt_A 379 NFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457 (538)
T ss_dssp HHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34577889999995 67899999999999999999999999999999999999999999999999999997656999999
Q ss_pred EecCHHHHHhhcCeEEEEEC--CEEEEeeCccccc
Q 046954 99 VSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLS 131 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~ 131 (146)
||||++++..+||||++|++ |+++..|+++++.
T Consensus 458 vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 458 VEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 99999999999999999986 7888889987764
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.3e-29 Score=211.45 Aligned_cols=112 Identities=25% Similarity=0.348 Sum_probs=102.8
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+.+.++++.+++. ++.++++.+|||||||||+|||||+++|++|||||||+|||+.++..+.++|++++++.|.|||+
T Consensus 449 ~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 527 (607)
T 3bk7_A 449 NFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527 (607)
T ss_dssp HHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34577889999996 57899999999999999999999999999999999999999999999999999997666999999
Q ss_pred EecCHHHHHhhcCeEEEEEC--CEEEEeeCccccc
Q 046954 99 VSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLS 131 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~ 131 (146)
||||++++..+||||++|++ |+++..|+++++.
T Consensus 528 vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 528 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 99999999999999999986 7888889987764
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=2.9e-30 Score=230.26 Aligned_cols=129 Identities=33% Similarity=0.542 Sum_probs=109.3
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.++... ...+++++.++++..++.+.. ....+.+||||||||++|||||+++|++|||||||
T Consensus 1168 TIreNI~~gld~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaT 1245 (1321)
T 4f4c_A 1168 SIAENIIYGLDP--SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 1245 (1321)
T ss_dssp EHHHHHSSSSCT--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred cHHHHHhccCCC--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcc
Confidence 689999988532 223567788888888773211 12235689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+.+.+.+.|+++. .|+|+|+|+|.++.+.. ||+|+||++|+|++.|+++++...+
T Consensus 1246 SaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1246 SALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp CSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999875 38999999999999875 9999999999999999999986543
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=3.8e-29 Score=223.03 Aligned_cols=127 Identities=35% Similarity=0.527 Sum_probs=108.2
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhh----------hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
|++|||.||.. ..+++++.++++..++.+.. ....+.+||||||||++||||++++|+++||||||
T Consensus 507 TI~eNI~~g~~----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 507 TIEENISLGKE----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp EHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred chhHHHhhhcc----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 68999999742 23567788888887763211 22346789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 134 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 134 (146)
|+||+.+...+.+.|.++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+.+++....
T Consensus 583 SaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 583 SALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp TTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 99999999999999999864 899999999999885 59999999999999999999986543
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.1e-28 Score=205.91 Aligned_cols=97 Identities=24% Similarity=0.433 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||+||
T Consensus 208 ~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivs 285 (607)
T 3bk7_A 208 KFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVE 285 (607)
T ss_dssp CHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467889999996 578999999999999999999999999999999999999999999999999999976 499999999
Q ss_pred cCHHHHHhhcCeEEEEECC
Q 046954 101 HSIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G 119 (146)
||++++..+||||++|+++
T Consensus 286 Hdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 286 HDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp SCHHHHHHHCSEEEEEESC
T ss_pred cChHHHHhhCCEEEEECCC
Confidence 9999999999999999865
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=2.4e-28 Score=211.60 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=105.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHH
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 80 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~ 80 (146)
|+.+|+.+ ...+ . .+++.++++.+|+...+.++++.+|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus 512 tv~e~l~~--~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~ 586 (986)
T 2iw3_A 512 SVLDFVFE--SGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW 586 (986)
T ss_dssp BHHHHHHT--TCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH
T ss_pred cHHHHHHH--hhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence 46677765 1111 1 56788899999996457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEE-EeeCcccc
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 130 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 130 (146)
+.+.|++ .|.|||+||||++++..+||+|++|++|+++ ..|+++++
T Consensus 587 l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 587 LVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999987 3899999999999999999999999999996 57887665
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=8.9e-29 Score=220.24 Aligned_cols=129 Identities=35% Similarity=0.572 Sum_probs=105.0
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCChhhhc-----------CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLS-----------KTGAEISVGQAQRVALARTLANEPEVLLLDEP 69 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgG~~qrv~ia~al~~~p~llllDEP 69 (146)
||+||+.++..... ...+++.+.++..++. ++.+ ..+.+|||||||||+|||||+.+|++||||||
T Consensus 1122 ti~eNi~~~~~~~~--~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEp 1198 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRV--VSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198 (1284)
T ss_dssp BHHHHHTCCCSSCC--CCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESC
T ss_pred cHHHHHhccCCCCC--CCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 68999998743221 2345566666665552 2222 23568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccCCC
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 135 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 135 (146)
|++||+.+.+.+.+.|++.. .|+|+|+|||+++++.. ||||++|++|++++.|+++++.....
T Consensus 1199 Ts~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A 1199 TSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp SSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred cccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999998863 48999999999999854 99999999999999999999865543
No 56
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=5e-28 Score=208.69 Aligned_cols=120 Identities=32% Similarity=0.438 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
+..++++.++|.....++++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|.++++ .|.|||
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 902 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 902 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 45678999999632578899999999999999999999865 99999999999999999999999999975 599999
Q ss_pred EEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954 98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+||||++++ .+||+|++| ++|++++.|+++++......+...|+
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~l 952 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHHH
Confidence 999999987 579999999 79999999999987654333444443
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=3.1e-28 Score=208.73 Aligned_cols=121 Identities=29% Similarity=0.412 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC---CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 96 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~---p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tv 96 (146)
.++.++++.++|.....++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..+.++|.++++ .|.||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tV 786 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTV 786 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 45778899999963246889999999999999999999996 799999999999999999999999999975 59999
Q ss_pred EEEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954 97 VMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 97 i~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
|+||||++++ ..||+|++| ++|+|++.|+++++......++..|+
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 9999999999 789999999 79999999999988654333444443
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=3.5e-28 Score=200.59 Aligned_cols=97 Identities=23% Similarity=0.429 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||+||
T Consensus 138 ~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vs 215 (538)
T 1yqt_A 138 KLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVE 215 (538)
T ss_dssp CHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 467889999996 578999999999999999999999999999999999999999999999999999976 599999999
Q ss_pred cCHHHHHhhcCeEEEEECC
Q 046954 101 HSIKQIQRIADVVCLLVNG 119 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G 119 (146)
||++++..+||||++|++|
T Consensus 216 Hd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 216 HDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp SCHHHHHHHCSEEEEEEEE
T ss_pred CCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999865
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=3.1e-28 Score=216.77 Aligned_cols=126 Identities=38% Similarity=0.570 Sum_probs=103.5
Q ss_pred ChHHHhhcCccccCCCccHHHHHHHHHHcCCCh----------hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 1 TVADNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 1 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
||+||+.++.. ....+++.++++..++.+ ......+.+||||||||++|||||+.+|++|||||||
T Consensus 479 ti~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt 554 (1284)
T 3g5u_A 479 TIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554 (1284)
T ss_dssp CHHHHHHHHCS----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 78999998742 123445555555554421 1123456799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCccccccC
Q 046954 71 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 133 (146)
|+||+.+.+.+.+.++++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 555 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 555 SALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999998874 38999999999999966 999999999999999999887543
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=1.3e-27 Score=206.56 Aligned_cols=120 Identities=27% Similarity=0.382 Sum_probs=103.5
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC---CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
+..++++.+||.....++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|.++++ .|.|||
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 920 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVI 920 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 45678899999532578899999999999999999999865 99999999999999999999999999975 599999
Q ss_pred EEecCHHHHHhhcCeEEEE------ECCEEEEeeCccccccCCCHHHHHHh
Q 046954 98 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL 142 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 142 (146)
+||||++++ ..||+|++| ++|++++.|+++++......+...|+
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~~l 970 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFL 970 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTTCHHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCHHHHHHHH
Confidence 999999987 579999999 68999999999887544334555544
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-27 Score=199.44 Aligned_cols=101 Identities=23% Similarity=0.416 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||+
T Consensus 199 ~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~ 276 (608)
T 3j16_B 199 PEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVIC 276 (608)
T ss_dssp HHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEE
T ss_pred HHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 35688899999996 578999999999999999999999999999999999999999999999999999975 4999999
Q ss_pred EecCHHHHHhhcCeEEEEECCEE
Q 046954 99 VSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 99 itH~~~~~~~~~d~v~~l~~G~i 121 (146)
||||++++..+||||++|++|..
T Consensus 277 vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 277 VEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp ECSCHHHHHHHCSEEEEEESCTT
T ss_pred EeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999988754
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.5e-27 Score=195.41 Aligned_cols=97 Identities=22% Similarity=0.386 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++ + |+|||+||
T Consensus 118 ~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vs 194 (538)
T 3ozx_A 118 KKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVD 194 (538)
T ss_dssp CHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEEC
T ss_pred HHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEE
Confidence 466789999995 57899999999999999999999999999999999999999999999999999995 4 89999999
Q ss_pred cCHHHHHhhcCeEEEEECCE
Q 046954 101 HSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G~ 120 (146)
||++++..+||+|++|++|.
T Consensus 195 Hdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEEEEEEET
T ss_pred eChHHHHhhCCEEEEecCCc
Confidence 99999999999999998754
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=4.1e-27 Score=203.25 Aligned_cols=109 Identities=29% Similarity=0.402 Sum_probs=97.6
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
..+.+..+|+.....++++.+|||||+|||+|||||+++|+ +|||||||+|||+.....+.++|+++++ .|.|||+|
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivV 522 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVV 522 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEE
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEE
Confidence 44567788986323688999999999999999999999887 9999999999999999999999999975 59999999
Q ss_pred ecCHHHHHhhcCeEEEE------ECCEEEEeeCcccccc
Q 046954 100 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE 132 (146)
Q Consensus 100 tH~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 132 (146)
|||++.+.. ||+|++| ++|++++.|+++++..
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999988765 9999999 8999999999998754
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=7.5e-27 Score=201.42 Aligned_cols=107 Identities=26% Similarity=0.396 Sum_probs=96.5
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
+.+..+||+.-..++++.+|||||+|||+||++|+.+| ++|||||||+|||+...+.+++.|+++++ .|.|||+|+|
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeH 564 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEH 564 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 35788999532268999999999999999999999985 99999999999999999999999999964 6999999999
Q ss_pred CHHHHHhhcCeEEEE------ECCEEEEeeCcccccc
Q 046954 102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE 132 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 132 (146)
|++++. .||+|++| ++|++++.|+++++..
T Consensus 565 dl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 565 DEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp CHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred CHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 999875 69999999 7999999999998754
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=3.8e-27 Score=204.10 Aligned_cols=104 Identities=22% Similarity=0.318 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCChhh-hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 046954 19 ENEVYKLLSLADLDSSF-LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 97 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi 97 (146)
.+++.++++.+|+...+ .++++++|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++ |.|||
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVI 952 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVI 952 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEE
Confidence 45678899999996444 58899999999999999999999999999999999999999999998887653 67999
Q ss_pred EEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 98 MVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 98 ~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
+||||++++..+||++++|++|+++..|+
T Consensus 953 iISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 953 IITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred EEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999987765
No 66
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.94 E-value=1.6e-26 Score=162.00 Aligned_cols=84 Identities=29% Similarity=0.355 Sum_probs=75.4
Q ss_pred hcCCcCCCChhHHHHHHHH------HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 36 LSKTGAEISVGQAQRVALA------RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia------~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|||++||++ .+..+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG-GGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH-HHHHh
Confidence 4678899999999999876 899999999999999999999999999999999865 489999999998 56789
Q ss_pred cCeEEEE--ECCEE
Q 046954 110 ADVVCLL--VNGEI 121 (146)
Q Consensus 110 ~d~v~~l--~~G~i 121 (146)
||++++| ++|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 56643
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=1.2e-26 Score=183.40 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=78.8
Q ss_pred cCCcCCCChhHHHHHHHHHHHh------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 37 SKTGAEISVGQAQRVALARTLA------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
++++.+|||||||||+||+||+ .+|++|||||||+|||+..+..+.+.|.++++ .|.|||+||||++. ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence 5678899999999999999999 79999999999999999999999999999965 59999999999988 6789
Q ss_pred CeEEEEECCEEEE
Q 046954 111 DVVCLLVNGEIVE 123 (146)
Q Consensus 111 d~v~~l~~G~i~~ 123 (146)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=2.7e-26 Score=198.47 Aligned_cols=108 Identities=29% Similarity=0.381 Sum_probs=96.0
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcC--CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~--p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
+.+..+||..-..++++.+|||||+|||+||++|+.+ |++|||||||++||+...+.+++.|+++++ .|.|||+|+|
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeH 581 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEH 581 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECC
Confidence 3477889852126899999999999999999999999 589999999999999999999999999965 6999999999
Q ss_pred CHHHHHhhcCeEEEE------ECCEEEEeeCccccccC
Q 046954 102 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 133 (146)
|++++. .||+|++| ++|++++.|+++++...
T Consensus 582 dl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 582 DEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 999875 79999999 79999999999887543
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=3.9e-25 Score=189.61 Aligned_cols=107 Identities=31% Similarity=0.415 Sum_probs=96.3
Q ss_pred HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 25 LLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 25 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
.+..+|+..-..++++.+|||||+|||+||++|+.+| ++|||||||++||+...+.+.++|+++++ .|.|||+|+|+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 5778899532268999999999999999999999999 59999999999999999999999999975 69999999999
Q ss_pred HHHHHhhcCeEEEE------ECCEEEEeeCccccccC
Q 046954 103 IKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 133 (146)
Q Consensus 103 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 133 (146)
++.+ ..||+|++| ++|++++.|+++++...
T Consensus 441 l~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 441 LDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9866 579999999 79999999999988654
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=3.4e-23 Score=164.86 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE----
Q 046954 43 ISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL---- 116 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l---- 116 (146)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|++++ + |.|||+|||+++.+ .+||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~-~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIA-ARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999996 3 89999999999765 679999999
Q ss_pred ECCEEEEee
Q 046954 117 VNGEIVEVL 125 (146)
Q Consensus 117 ~~G~i~~~g 125 (146)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999987653
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.1e-25 Score=178.26 Aligned_cols=101 Identities=12% Similarity=0.168 Sum_probs=84.8
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHH--HhcCCCE----EEeeC-CCCCCCHHHHHHHHHHHHHHHHhcCC
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALART--LANEPEV----LLLDE-PTSALDPISTQNIEDVLVKLKKKHGM 94 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~a--l~~~p~l----lllDE-Pt~~LD~~~~~~~~~~l~~l~~~~g~ 94 (146)
+..+++.+|+. +..+ +.+|||||||||+|||| |+.+|++ +|||| ||++||+. ...+.+++ ++.|.
T Consensus 218 ~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~ 289 (460)
T 2npi_A 218 KQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNV 289 (460)
T ss_dssp BCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTC
T ss_pred HHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCC
Confidence 44567888886 3444 78999999999999999 9999999 99999 99999999 44444443 34588
Q ss_pred eEEEEecCHH------HHHhhcCe-----EEEEE-CCEEEEeeCccccc
Q 046954 95 TIVMVSHSIK------QIQRIADV-----VCLLV-NGEIVEVLKPDLLS 131 (146)
Q Consensus 95 tvi~itH~~~------~~~~~~d~-----v~~l~-~G~i~~~g~~~~~~ 131 (146)
|+|+|||+.+ ++..+||| |++|+ +|+++ .|+++++.
T Consensus 290 tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 290 NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999999987 88899999 99999 99999 88887664
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.87 E-value=4.2e-22 Score=163.43 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=73.3
Q ss_pred CCcCCC-ChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 38 KTGAEI-SVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 38 ~~~~~L-SgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
+++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+. +||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEE
Confidence 456788 999999999999999999 99999999999999999999999999974 899999999998775 699999
Q ss_pred EEECCE
Q 046954 115 LLVNGE 120 (146)
Q Consensus 115 ~l~~G~ 120 (146)
+|++|.
T Consensus 469 ~~~~~~ 474 (517)
T 4ad8_A 469 KVEKQV 474 (517)
T ss_dssp EEECCE
T ss_pred EEeccc
Confidence 996653
No 73
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.86 E-value=1.6e-21 Score=139.78 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=70.5
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhc----CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 36 LSKTGAEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
..+++..||||||||++||++++. +|+++||||||+|||+.+...+.+.|+++.+ +.++|+|||+... ..+||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-~~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-MANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-HTTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-HHhCC
Confidence 345678999999999999999974 4699999999999999999999999999853 5789999999754 57899
Q ss_pred eEEEE--ECCE
Q 046954 112 VVCLL--VNGE 120 (146)
Q Consensus 112 ~v~~l--~~G~ 120 (146)
+++.+ .+|.
T Consensus 135 ~i~~v~~~~g~ 145 (173)
T 3kta_B 135 KIIGVSMRDGV 145 (173)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCE
Confidence 99855 4664
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.86 E-value=6.3e-22 Score=154.74 Aligned_cols=80 Identities=28% Similarity=0.357 Sum_probs=71.6
Q ss_pred hcCCcCCCChhHHH------HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 36 LSKTGAEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 36 ~~~~~~~LSgG~~q------rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
.++++.+||||||| |+++|++++.+|++|||||||++||+..+..+.+.|.++.+ .|.|||+||||.+ +..+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-HHHh
Confidence 45678999999999 67788888899999999999999999999999999999865 4889999999965 6789
Q ss_pred cCeEEEEE
Q 046954 110 ADVVCLLV 117 (146)
Q Consensus 110 ~d~v~~l~ 117 (146)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999985
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=1.3e-21 Score=151.90 Aligned_cols=91 Identities=22% Similarity=0.301 Sum_probs=75.9
Q ss_pred hcCCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 36 LSKTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
.+.++.+||||||||++||+||+ .+|+++||||||++||+..+..+.+.|.++. + |.++|++||+++ +..+||
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~-~~~~~d 289 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKI-VMEAAD 289 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTT-GGGGCS
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHH-HHhhCc
Confidence 45667899999999999999997 6889999999999999999999999999984 3 899999999964 667899
Q ss_pred eE--EEEECCEE-EEeeCccc
Q 046954 112 VV--CLLVNGEI-VEVLKPDL 129 (146)
Q Consensus 112 ~v--~~l~~G~i-~~~g~~~~ 129 (146)
++ ++|.+|.- +...+.++
T Consensus 290 ~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 290 LLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEEEESSSCEEEEECCC--
T ss_pred eEEEEEEeCCEEEEEEEEcch
Confidence 87 88888864 33334433
No 76
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=1.1e-21 Score=154.72 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=77.8
Q ss_pred cCCcC-CCChhHHHHHHHHHHHh---------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 37 SKTGA-EISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 37 ~~~~~-~LSgG~~qrv~ia~al~---------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
++++. .||||||||++||++|+ .+|++|||||||++||+..+..+.+.+.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc-
Confidence 45666 79999999999999999 8999999999999999999999999998762 699999994 44
Q ss_pred HhhcCeEEEEECCEEEEeeCcccc
Q 046954 107 QRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 107 ~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=1.7e-20 Score=133.46 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=62.5
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------------STQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~----------------~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
....|+|||||++||||++.+|++++|||||++||+. ....+.+.|++++++ |.|+|++|||+
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 4567999999999999999999999999999999999 568999999998765 99999999999
Q ss_pred HHHHh
Q 046954 104 KQIQR 108 (146)
Q Consensus 104 ~~~~~ 108 (146)
+++..
T Consensus 160 ~~~~~ 164 (171)
T 4gp7_A 160 EEVEE 164 (171)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99876
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=6.1e-20 Score=131.84 Aligned_cols=81 Identities=9% Similarity=0.210 Sum_probs=70.1
Q ss_pred hhcCCcCCCChhHHHHHHHHHH-----HhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe---cCHH
Q 046954 35 FLSKTGAEISVGQAQRVALART-----LANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKKHGMTIVMVS---HSIK 104 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~a-----l~~~p~llllDE--Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it---H~~~ 104 (146)
..++++.+||||||||++||+| ++.+|+++|||| ||++||+...+.+.+.+.+ .+.|+|++| |+.+
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~ 144 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHP 144 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCch
Confidence 3566788999999999999996 999999999999 9999999999999888765 377788888 5999
Q ss_pred HHHhhcCeEEEEECCEEEE
Q 046954 105 QIQRIADVVCLLVNGEIVE 123 (146)
Q Consensus 105 ~~~~~~d~v~~l~~G~i~~ 123 (146)
++..+|+| .+|++++
T Consensus 145 ~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 145 LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHTC----TTCEEEE
T ss_pred HHHHHHhc----CCcEEEE
Confidence 99999998 5566654
No 79
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.78 E-value=3.2e-19 Score=140.92 Aligned_cols=77 Identities=27% Similarity=0.419 Sum_probs=68.9
Q ss_pred CCcCCCChhHHHHH------HHHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhc
Q 046954 38 KTGAEISVGQAQRV------ALARTLANE-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 110 (146)
Q Consensus 38 ~~~~~LSgG~~qrv------~ia~al~~~-p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~ 110 (146)
.++..|||||+||+ ++|++++.+ |+++||||||++||+..+..+.+.|.++. + +.+||+|||+++ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHH-HHhhC
Confidence 56679999999988 567899999 99999999999999999999999999874 2 569999999986 67899
Q ss_pred CeEEEEE
Q 046954 111 DVVCLLV 117 (146)
Q Consensus 111 d~v~~l~ 117 (146)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=1e-18 Score=140.26 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCcCCCChhHHHHHHHHHHHh----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954 38 KTGAEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v 113 (146)
+++..|||||||+++||++|+ .+|+++||||||++||+..+..+.+.|.++.+ .|.++|+|||+... ...||++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~ 406 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDAL 406 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEE
Confidence 445679999999999999999 58999999999999999999999999998853 37899999999654 5679999
Q ss_pred EEEE
Q 046954 114 CLLV 117 (146)
Q Consensus 114 ~~l~ 117 (146)
+++.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=1.1e-17 Score=137.47 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=78.4
Q ss_pred hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEecCH-----
Q 046954 34 SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI-----STQNIEDVLVKLKKKHGMTIVMVSHSI----- 103 (146)
Q Consensus 34 ~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~-----~~~~~~~~l~~l~~~~g~tvi~itH~~----- 103 (146)
.+.+.++.+|||||+||+++|+++..+|+++|+| ||++||+. .+..+.++++.+++ .|+|+|++||+.
T Consensus 345 ~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~ 422 (525)
T 1tf7_A 345 KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGA 422 (525)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCC
T ss_pred EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCc
Confidence 3566778899999999999999999999999999 99999999 99999999999864 599999999998
Q ss_pred -----HHHHhhcCeEEEEECCE
Q 046954 104 -----KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 104 -----~~~~~~~d~v~~l~~G~ 120 (146)
..+..+||+|++|++|+
T Consensus 423 ~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 423 HSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CSSCSSCCTTTCSEEEEEEEEE
T ss_pred ccccCcccceeeeEEEEEEEEE
Confidence 77888999999999886
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=1.1e-17 Score=122.81 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 46 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 46 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
||||||+|||||+.+|++|||||||++ ++..+.+.|+++ + .|+||| +|||++++.. ....++|..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC----------------CCH
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 999999999999999999999999999 899999999988 4 489999 9999987654 344567754
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.57 E-value=3.1e-15 Score=129.84 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=75.2
Q ss_pred CcCCCChhHHHHHHHHHHH--hcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 39 TGAEISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 39 ~~~~LSgG~~qrv~ia~al--~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ ..++..+.++.|+++|++||+.+.+ .+||++..
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~ 796 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPT 796 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccce
Confidence 3457899999999999988 999999999999999999999888 6677777654599999999997654 78999999
Q ss_pred EECCEEEEeeCcccc
Q 046954 116 LVNGEIVEVLKPDLL 130 (146)
Q Consensus 116 l~~G~i~~~g~~~~~ 130 (146)
+++|++...++.+++
T Consensus 797 v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 797 VNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEEETTEE
T ss_pred eEeeEEEEEecCCcE
Confidence 999999888777654
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.56 E-value=1.2e-14 Score=110.82 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=66.1
Q ss_pred CcCCCChhH-HHHHHHHHHHhcCCCEEEeeCCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEecCH--H----
Q 046954 39 TGAEISVGQ-AQRVALARTLANEPEVLLLDEPTS---A---LDP-ISTQNIEDVLVKLKKKHGMTIVMVSHSI--K---- 104 (146)
Q Consensus 39 ~~~~LSgG~-~qrv~ia~al~~~p~llllDEPt~---~---LD~-~~~~~~~~~l~~l~~~~g~tvi~itH~~--~---- 104 (146)
.+..+|.++ +|++. |+++..+|+++|+||||+ + +|. .....+.+.|++++++.|+|||++||+. +
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~ 204 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKA 204 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-------
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccc
Confidence 446789999 67777 999999999999999999 5 555 6778899999999877799999999995 5
Q ss_pred ----------------HHHhhcCeEEEEECCEE
Q 046954 105 ----------------QIQRIADVVCLLVNGEI 121 (146)
Q Consensus 105 ----------------~~~~~~d~v~~l~~G~i 121 (146)
.+..+||+|++|++|+.
T Consensus 205 ~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 205 HEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----------CCC---CHHHHCSEEEEEEEC--
T ss_pred cccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 68889999999999875
No 85
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.52 E-value=3.6e-16 Score=125.26 Aligned_cols=97 Identities=7% Similarity=0.043 Sum_probs=80.2
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChh--HHHHHHHHHHHhc----------CCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVG--QAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKL 88 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG--~~qrv~ia~al~~----------~p~llllDEPt~~LD~~~~~~~~~~l~~l 88 (146)
++.++++.+++. +. +..+. ||+| |+||++||++|+. +|+++++||||+|||+..+..+.+.++++
T Consensus 136 ~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 136 PPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 467888988884 33 33343 9999 9999999999999 99999999999999999999999999998
Q ss_pred HH----hc----CCeEEEEecCHHH--HHhhcCeEE-EEECCE
Q 046954 89 KK----KH----GMTIVMVSHSIKQ--IQRIADVVC-LLVNGE 120 (146)
Q Consensus 89 ~~----~~----g~tvi~itH~~~~--~~~~~d~v~-~l~~G~ 120 (146)
.+ +. ..+|+++||+++. +.+++|++. .|..|+
T Consensus 213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 52 22 3678899999987 999999985 555554
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.51 E-value=1.6e-16 Score=115.85 Aligned_cols=80 Identities=9% Similarity=0.092 Sum_probs=68.7
Q ss_pred HHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 26 LSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 26 l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~L----D~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
++.+|+ ..+.++++..|| +|+.+|++++|||||+++ |+..++.+.+.+++++++.|.|+|++||
T Consensus 119 l~~~gl-~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH 186 (207)
T 1znw_A 119 VDLAGA-RAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR 186 (207)
T ss_dssp CCHHHH-HHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS
T ss_pred eCHHHH-HHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC
Confidence 445555 346677888888 999999999999999998 7889999999999997666999999999
Q ss_pred CHHHHHhhcCeEEEEE
Q 046954 102 SIKQIQRIADVVCLLV 117 (146)
Q Consensus 102 ~~~~~~~~~d~v~~l~ 117 (146)
|++++..+||||++|.
T Consensus 187 dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 187 RLESACAELVSLLVGT 202 (207)
T ss_dssp SHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999984
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.48 E-value=8.3e-14 Score=121.96 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=70.5
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~-~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
...+.+|+++++ +++|++++.+|+++|||||++|+|+... ..++.++..++++.|+++|++||+++.+..++|++.++
T Consensus 847 ~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 847 SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence 345677887775 9999999999999999999999999985 55788999987545899999999999999999999887
Q ss_pred ECCEEE
Q 046954 117 VNGEIV 122 (146)
Q Consensus 117 ~~G~i~ 122 (146)
+|++.
T Consensus 926 -~g~~~ 930 (1022)
T 2o8b_B 926 -LGHMA 930 (1022)
T ss_dssp -EEEEE
T ss_pred -cCeEE
Confidence 58876
No 88
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.43 E-value=1.4e-13 Score=119.38 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=62.2
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v 113 (146)
.....+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+. .++..+.++.|+++|++||+++.+ .++|+.
T Consensus 729 l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 729 IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp -----CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 445678899999999999999 8999999999999999999999987 777777655699999999998765 566654
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.43 E-value=3.9e-13 Score=97.96 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecCH--------HHHHhh
Q 046954 42 EISVGQAQRVALARTLANEPE--VLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHSI--------KQIQRI 109 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~--llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~~--------~~~~~~ 109 (146)
..|.++.++...+.+...+|+ ++++||||+++ |+.....+.+.|++++++.|+|||+++|+. ..+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 348999988888888888999 99999999887 999999999999999877799999999999 458899
Q ss_pred cCeEEEEECC
Q 046954 110 ADVVCLLVNG 119 (146)
Q Consensus 110 ~d~v~~l~~G 119 (146)
||+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999865
No 90
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.36 E-value=1.4e-12 Score=98.78 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=62.1
Q ss_pred HHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEE
Q 046954 24 KLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS--ALDPIST---QNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 24 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~--~LD~~~~---~~~~~~l~~l~~~~g~tvi~ 98 (146)
.+++.+.+. +..++++..||+||+|++ ++++.+|+++++|||++ ++|+... ..+++.|.+++++.|+|||+
T Consensus 101 ~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 101 AVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp HHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345666664 345678899999998764 68889999999999999 9998554 88888899987667999999
Q ss_pred EecCHHHHH
Q 046954 99 VSHSIKQIQ 107 (146)
Q Consensus 99 itH~~~~~~ 107 (146)
++|+.....
T Consensus 177 i~H~~~~~~ 185 (279)
T 1nlf_A 177 LHHASKGAA 185 (279)
T ss_dssp EEEC-----
T ss_pred EecCCCccc
Confidence 999987653
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.33 E-value=1.2e-13 Score=107.75 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 45 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 45 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
|||+||++||+||..+|+++++|||++. .+.+.|+.+.. .+.|+|+++|+.+ +...+||+++|.+|.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 8999999999999999999999999982 35677777753 2458999999998 778899999998885
No 92
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.32 E-value=3.5e-13 Score=103.88 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=68.2
Q ss_pred HHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec---
Q 046954 27 SLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH--- 101 (146)
Q Consensus 27 ~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH--- 101 (146)
+.+|+. +..++++.+|| |||++||||++.+|+ +|+|| ||+|||+..+ ++++.++.|.|+|++||
T Consensus 190 dt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~ 258 (302)
T 3b9q_A 190 DTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDG 258 (302)
T ss_dssp CCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSS
T ss_pred hcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCC
Confidence 334553 34456677899 999999999999999 99999 9999999865 34555456999999999
Q ss_pred ------CHHHHHhhcCeEEEEECCEE
Q 046954 102 ------SIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 102 ------~~~~~~~~~d~v~~l~~G~i 121 (146)
.++.+..++..|.++..|+.
T Consensus 259 ~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 259 SARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp CSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCccChheehHHHHCCCEEEEeCCCC
Confidence 67778788899999999974
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.29 E-value=2.5e-12 Score=94.83 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCC-----HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH---------Hhh
Q 046954 44 SVGQAQRVALARTLANEPEVLLLDEPTSALD-----PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI---------QRI 109 (146)
Q Consensus 44 SgG~~qrv~ia~al~~~p~llllDEPt~~LD-----~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~---------~~~ 109 (146)
+.++.........-..+|+++++||||+++| +..++.+.++++.+++ .|+|||++||+++.+ ..+
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCCCcccccccChhhE
Confidence 3444444444445568999999999999997 6677779999998865 599999999999998 688
Q ss_pred c-CeEEEEE
Q 046954 110 A-DVVCLLV 117 (146)
Q Consensus 110 ~-d~v~~l~ 117 (146)
| |+|++|+
T Consensus 198 ~aD~vi~l~ 206 (251)
T 2ehv_A 198 IARGVIVLD 206 (251)
T ss_dssp GCSEEEEEE
T ss_pred eeeEEEEEe
Confidence 8 9999995
No 94
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.25 E-value=2.4e-12 Score=101.43 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=67.4
Q ss_pred HcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC--EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec----
Q 046954 28 LADLDSSFLSKTGAEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---- 101 (146)
Q Consensus 28 ~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~--llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH---- 101 (146)
.+|+. +..++++.+|| +||++||||++.+|+ +|+|| ||+|||+..+. +++.+..|.|+|++||
T Consensus 248 t~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 248 TSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp CCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTC
T ss_pred hcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCccc
Confidence 34553 34455677899 999999999999999 99999 99999998653 4455446999999999
Q ss_pred -----CHHHHHhhcCeEEEEECCEE
Q 046954 102 -----SIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 102 -----~~~~~~~~~d~v~~l~~G~i 121 (146)
.++.+..++..|.++..|+.
T Consensus 317 ~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 317 ARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp SCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ccccHHHHHHHHhCCCEEEEeCCCC
Confidence 56777788899999999964
No 95
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.24 E-value=1.4e-14 Score=111.92 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.+.+.++.+ ++. ..+ +..|||||||| |||++.+|++|| |++||+.+...+.. +|
T Consensus 183 ~~~~~i~~~-L~~-gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------lt 236 (305)
T 2v9p_A 183 ACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LH 236 (305)
T ss_dssp HHHHHHHHT-TTG-GGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GT
T ss_pred HHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------Hh
Confidence 345555553 432 234 77999999999 999999999999 99999999988852 18
Q ss_pred cCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 101 HSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
|++..+ ..||+| +|++|++++.|+++++
T Consensus 237 H~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 237 SRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp TTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred CCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 998765 679999 9999999999998776
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.23 E-value=3.5e-11 Score=87.12 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCCh-hhh-cCCcCCCChhH--HHHHHHHHHHhcC-CCEEEeeCCCCCCCHHH--------HHHHHHHH
Q 046954 19 ENEVYKLLSLADLDS-SFL-SKTGAEISVGQ--AQRVALARTLANE-PEVLLLDEPTSALDPIS--------TQNIEDVL 85 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~-~~~-~~~~~~LSgG~--~qrv~ia~al~~~-p~llllDEPt~~LD~~~--------~~~~~~~l 85 (146)
..++....+.+++.. .+. +..+.++|+++ +|+++.+++++.+ |+++++|||++.+|+.. ...+.+.|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L 138 (220)
T 2cvh_A 59 PERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVL 138 (220)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHH
Confidence 345555566666531 111 22345667765 5678888899986 99999999999999743 24566668
Q ss_pred HHHHHhcCCeEEEEecCHH-------------HHHhhcCeEEEEECC
Q 046954 86 VKLKKKHGMTIVMVSHSIK-------------QIQRIADVVCLLVNG 119 (146)
Q Consensus 86 ~~l~~~~g~tvi~itH~~~-------------~~~~~~d~v~~l~~G 119 (146)
++++++.|++||+++|... .+..+||++++|+..
T Consensus 139 ~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 139 LWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 8887777999999999865 678899999999865
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.18 E-value=1.6e-13 Score=107.73 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH-hcCC-----eEEEEecCHHHHHhhcC
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGM-----TIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~-~~g~-----tvi~itH~~~~~~~~~d 111 (146)
..+..||+|| |+|++| +.+|++ |+|+|+.....+.+++.++.+ +.|. ||+++|||++ ..+||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d 234 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD 234 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence 4578899999 899999 678876 999999999999999999864 3577 9999999998 67899
Q ss_pred eEEEEECCEEEEeeCcccc
Q 046954 112 VVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 112 ~v~~l~~G~i~~~g~~~~~ 130 (146)
+++++.+|+|+.+++.+++
T Consensus 235 ~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 235 EVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHCSEEEEBCHHHHTT
T ss_pred heEEeeCcEEEEeCCHHHc
Confidence 9999999999999887664
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.18 E-value=9.6e-12 Score=102.09 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=58.8
Q ss_pred HHHHHHHHHh-cCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH---------HhhcCeE
Q 046954 49 QRVALARTLA-NEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI---------QRIADVV 113 (146)
Q Consensus 49 qrv~ia~al~-~~p~llllDEPt~-----~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~---------~~~~d~v 113 (146)
+...+..+|. .+|+++++||||+ ++|+..++.+.++++.+++ .|+|||++||+++++ ..+||+|
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEE
Confidence 4455566664 6899999999998 4699999999999999976 599999999999984 5569999
Q ss_pred EEEEC
Q 046954 114 CLLVN 118 (146)
Q Consensus 114 ~~l~~ 118 (146)
++|++
T Consensus 205 i~L~~ 209 (525)
T 1tf7_A 205 VILRN 209 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.18 E-value=2e-11 Score=88.94 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCChh-hhcC--CcCCCChhHH-HHHHHHHHHhc-------CCCEEEeeCCCCCCCHHH----------
Q 046954 19 ENEVYKLLSLADLDSS-FLSK--TGAEISVGQA-QRVALARTLAN-------EPEVLLLDEPTSALDPIS---------- 77 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~-~~~~--~~~~LSgG~~-qrv~ia~al~~-------~p~llllDEPt~~LD~~~---------- 77 (146)
..++..+.+.+++... ..+. .....+++++ +.+..+++++. +|+++++|||++++|+..
T Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~ 152 (231)
T 4a74_A 73 PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 152 (231)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence 4456667777777521 1111 1234455544 34666666665 999999999999999842
Q ss_pred --HHHHHHHHHHHHHhcCCeEEEEec----CHHHHHhhcCeEEEEECCE
Q 046954 78 --TQNIEDVLVKLKKKHGMTIVMVSH----SIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 78 --~~~~~~~l~~l~~~~g~tvi~itH----~~~~~~~~~d~v~~l~~G~ 120 (146)
...+++.|.+++++.|+|||++|| +...+..+||++++|++|+
T Consensus 153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 237888888887777999999999 4445999999999999763
No 100
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.17 E-value=6.2e-13 Score=100.98 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=51.6
Q ss_pred hhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 34 SFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 34 ~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+.+..+.+|||||+||+++|||++. ++++|||+.|||+.. .++++.+.+ . .++|++.|..+
T Consensus 90 ~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D 151 (270)
T 3sop_A 90 QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGG
T ss_pred HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEeccc
Confidence 35566778999999999999999886 999999999999987 456666654 3 88999988765
No 101
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.17 E-value=1.2e-11 Score=106.03 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=65.6
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
.+.+|+++++ ++.+...+.+|+++|||||++|+|+.....+ ..++..+.++.|.++|++||+.+.+ .+||++..+.+
T Consensus 667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n 744 (800)
T 1wb9_A 667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVAN 744 (800)
T ss_dssp ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEE
T ss_pred hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEE
Confidence 3457777765 4444556899999999999999999887776 7788888753589999999999765 58999888888
Q ss_pred CEEEEeeCc
Q 046954 119 GEIVEVLKP 127 (146)
Q Consensus 119 G~i~~~g~~ 127 (146)
|++......
T Consensus 745 ~~~~~~~~~ 753 (800)
T 1wb9_A 745 VHLDALEHG 753 (800)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEEcC
Confidence 887655433
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.15 E-value=3.2e-11 Score=102.99 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCChhHHHHHHHHHHH--hcCCCEEEeeCC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEE
Q 046954 41 AEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al--~~~p~llllDEP---t~~LD~~~~-~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~ 114 (146)
..+|+|+++++.+++++ +.+|+++||||| |++||+.+. ..+.+.|.+ .|.++|++||+.+.+ .++ .-
T Consensus 634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~-~~~--~~ 706 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELT-ALG--LP 706 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHH-TCC--CT
T ss_pred hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-Hhh--hh
Confidence 46899999999999999 999999999999 999999876 467777654 389999999998765 455 22
Q ss_pred EEECCEEEEe
Q 046954 115 LLVNGEIVEV 124 (146)
Q Consensus 115 ~l~~G~i~~~ 124 (146)
.+.++++...
T Consensus 707 ~v~n~~~~~~ 716 (765)
T 1ewq_A 707 RLKNLHVAAR 716 (765)
T ss_dssp TEEEEEEEEE
T ss_pred cceEEEEEEE
Confidence 3344554433
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.14 E-value=1.6e-13 Score=100.88 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHH-----HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh---
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVAL-----ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--- 91 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~i-----a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--- 91 (146)
..+.++++...+. ..+ .+|||||+||++| +++++.+|++++||||++++|..+...+.+.+.+..++
T Consensus 105 ~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~ 179 (218)
T 1z6g_A 105 SEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHE 179 (218)
T ss_dssp HHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3455666654431 222 4789999999999 89999999999999999999999999999988877543
Q ss_pred ---cCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 92 ---HGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 92 ---~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
.+...|+++|+++++...+++++.-
T Consensus 180 ~h~~~~d~iiv~~~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 180 ANLLNFNLSIINDDLTLTYQQLKNYLLN 207 (218)
T ss_dssp HTTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred hcccCCCEEEECCCHHHHHHHHHHHHHH
Confidence 4678899999999998888877643
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.09 E-value=5.6e-11 Score=93.14 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCChh-hhcC--CcC-CCChhHHHHHHHHHHHh-------cCCCEEEeeCCCCCCCHHH----------
Q 046954 19 ENEVYKLLSLADLDSS-FLSK--TGA-EISVGQAQRVALARTLA-------NEPEVLLLDEPTSALDPIS---------- 77 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~-~~~~--~~~-~LSgG~~qrv~ia~al~-------~~p~llllDEPt~~LD~~~---------- 77 (146)
.+++....+.+++... ..+. ... .-|.+++|++.++++++ .+|+++|+||||+++|+..
T Consensus 179 ~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~ 258 (349)
T 1pzn_A 179 PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 258 (349)
T ss_dssp HHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHH
Confidence 3455556666666421 1111 111 12688999999999999 6899999999999999863
Q ss_pred --HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeC
Q 046954 78 --TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 78 --~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
...++..|.+++++.|+|||+++|....+...++.......|++++.+.
T Consensus 259 ~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 259 QKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 4667777788877779999999999876654444455566676655443
No 105
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.08 E-value=1.8e-13 Score=105.95 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=74.3
Q ss_pred ChHHHhhcCccccCC--CccHHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHH
Q 046954 1 TVADNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 78 (146)
Q Consensus 1 tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 78 (146)
|+.+|+.+... ++. ....+.+.+.++.++ . ...+.++.+|||||+||+++|++++.+|++||+|||++.+|+..
T Consensus 136 t~~e~~~~~~~-~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~- 211 (312)
T 3aez_A 136 AELQRRNLMHR-KGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT- 211 (312)
T ss_dssp HHHHHTTCTTC-TTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-
T ss_pred cHHHHHHHHHh-cCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-
Confidence 45677765321 222 123456777888776 3 34456678999999999999999999999999999999998622
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHH-HhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQI-QRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~~-~~~~d~v~~l~~G~ 120 (146)
..+.+..+ ..|+++|+.+.. ..+.+|.+.+++|.
T Consensus 212 -------~~l~~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 -------LMVSDLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -------CCGGGGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -------HHHHHhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 11222233 457788887653 45567777777764
No 106
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.04 E-value=2.6e-12 Score=103.64 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=70.1
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH---hcCC-----eEEEEecCHHHHHhhcC
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK---KHGM-----TIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~---~~g~-----tvi~itH~~~~~~~~~d 111 (146)
+..||+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ +.|. ||+++|||++ ..+||
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad 323 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIAD 323 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhc
Confidence 56899999 999999 888887 999999999999999999865 2364 9999999998 67899
Q ss_pred eEEEEECCEEEEeeCcccc
Q 046954 112 VVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 112 ~v~~l~~G~i~~~g~~~~~ 130 (146)
++++|.+|+++..+++.++
T Consensus 324 ~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 324 SARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHSSEEEEECHHHHHT
T ss_pred eEEEEeCcEEEEeCCHHHc
Confidence 9999999999998887665
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.93 E-value=1e-12 Score=95.20 Aligned_cols=85 Identities=9% Similarity=-0.079 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhH----HHHHHHHHHHhcCCCEEEeeCCCCC-------CCHHHHHHHHHHHHH
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQ----AQRVALARTLANEPEVLLLDEPTSA-------LDPISTQNIEDVLVK 87 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~----~qrv~ia~al~~~p~llllDEPt~~-------LD~~~~~~~~~~l~~ 87 (146)
.+++.+.++.+++. +..+.++.++|+|+ +||+++|++++.+|.++++||||++ ||+.....+.+.+.+
T Consensus 67 ~~~~~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 67 LALYLEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp HHHHHHHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 45667777877775 34566788999997 4788999999999999999999999 999999999999988
Q ss_pred HHHhcCCeEEEEecCHH
Q 046954 88 LKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 88 l~~~~g~tvi~itH~~~ 104 (146)
..++.|.|++.++|++.
T Consensus 146 ~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 146 DVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHSCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 65456999999999853
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.92 E-value=4.7e-10 Score=84.68 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE
Q 046954 49 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 117 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~ 117 (146)
-+++||+||.++|+++++|||| |+.+...++ +. +. .|.+|++++|+.+ +...+||++.|.
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 4899999999999999999999 988865443 33 33 4999999999987 567788876654
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.86 E-value=2.6e-11 Score=87.55 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=57.4
Q ss_pred cCCcCCCChhHHHHH-HHHH---HHhcCCCEEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE----EecCHHHH
Q 046954 37 SKTGAEISVGQAQRV-ALAR---TLANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKKHGMTIVM----VSHSIKQI 106 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv-~ia~---al~~~p~llllDE--Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~----itH~~~~~ 106 (146)
.++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+++. . ..++|+ ++|+.+
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~-- 150 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP-- 150 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--
Confidence 344557999999888 4444 6899999999999 899999976555555543 3 344553 349864
Q ss_pred HhhcCeEEEEECCEEEEe
Q 046954 107 QRIADVVCLLVNGEIVEV 124 (146)
Q Consensus 107 ~~~~d~v~~l~~G~i~~~ 124 (146)
..+.|+|..+.+|+|+..
T Consensus 151 ~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 151 LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CTTHHHHHTTCCSEEEEC
T ss_pred hHHHHHHeecCCcEEEEe
Confidence 345677777788998764
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.79 E-value=1.4e-09 Score=85.44 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 52 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 52 ~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
+||+||.++|++|++|||+ |+.... .+.+.+. .|++|++++|+.+.+ ..+||++.|..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 9999999999999999999 655543 3344444 499999999999877 67999988744
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.78 E-value=4.8e-09 Score=75.19 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHH-HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQR-VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 95 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr-v~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t 95 (146)
++..++...+++.-....++..+|+||+|+ +..+++++.+|+++++|||||++|+.+...+++.|.++..+ |.+
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 455667777775323356788899999999 89999999999999999999999999999999999998653 543
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.75 E-value=2.6e-08 Score=72.89 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCh-hhhcC--CcCCCChhHHHH-HHHHHHHh--cCCCEEEeeCCCCCCCHH-------H-----HHH
Q 046954 19 ENEVYKLLSLADLDS-SFLSK--TGAEISVGQAQR-VALARTLA--NEPEVLLLDEPTSALDPI-------S-----TQN 80 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~-~~~~~--~~~~LSgG~~qr-v~ia~al~--~~p~llllDEPt~~LD~~-------~-----~~~ 80 (146)
..+....++.+++.. ...+. .....+..+... +.-+..++ .+|+++++|||++.+|+. . ...
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~ 151 (243)
T 1n0w_A 72 PERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 151 (243)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHH
Confidence 344555666677642 11111 123456655432 23233333 589999999999999985 3 345
Q ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHh-------------------hcCeEEEEECC
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSIKQIQR-------------------IADVVCLLVNG 119 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~~~~~~-------------------~~d~v~~l~~G 119 (146)
+...|.+++++.|+|||+++|....... +||.+++|+.|
T Consensus 152 ~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 152 FLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 6666777777779999999997765543 79999999876
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.66 E-value=3.7e-10 Score=86.74 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=49.9
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~-LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+.++.++|||||||+.+|||++ ++++||||++ ||+... +.++++.++.+.++|+++||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 34677899999999999999886 9999999984 999873 5666665445789999999973
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.59 E-value=2.9e-09 Score=79.08 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+.+.+.++.+. +..+.++..||+||+||+++ ++++.+|+++|+|||....+.. +.++ .+.+|+++
T Consensus 97 ~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~ 161 (245)
T 2jeo_A 97 DLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVD 161 (245)
T ss_dssp HHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEE
T ss_pred HHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEE
Confidence 33455555431 23456778999999999988 6888999999999999888764 2222 37899999
Q ss_pred ecCH-HHHHhhcCeEEEEECCE
Q 046954 100 SHSI-KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 100 tH~~-~~~~~~~d~v~~l~~G~ 120 (146)
||+. .....+++++ ++|+
T Consensus 162 th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 162 TDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp CCHHHHHHHHHHHHT---C---
T ss_pred CCHHHHHHHHHHHHH---HcCC
Confidence 9974 4444555545 6674
No 115
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.51 E-value=4.1e-07 Score=72.47 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCChh-hh-cCCcCCCChhHHHH--HHHHHHH--hcCCCEEEeeCCCCCCCHHHH------------HH
Q 046954 19 ENEVYKLLSLADLDSS-FL-SKTGAEISVGQAQR--VALARTL--ANEPEVLLLDEPTSALDPIST------------QN 80 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~-~~-~~~~~~LSgG~~qr--v~ia~al--~~~p~llllDEPt~~LD~~~~------------~~ 80 (146)
..++....+.+++... .. +-.......++.+. +.-+..+ ..+|+++++|||++.+|+... ..
T Consensus 226 ~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~ 305 (400)
T 3lda_A 226 PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK 305 (400)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHH
Confidence 4556667778887521 11 11222233344333 3333333 257999999999999997543 67
Q ss_pred HHHHHHHHHHhcCCeEEEEecCH-------------------HHHHhhcCeEEEEECCE
Q 046954 81 IEDVLVKLKKKHGMTIVMVSHSI-------------------KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 81 ~~~~l~~l~~~~g~tvi~itH~~-------------------~~~~~~~d~v~~l~~G~ 120 (146)
++..|++++++.|+|||+|+|.. ..+..++|.+++|++|+
T Consensus 306 il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 306 FMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 88889999888899999999982 23577899999998764
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.44 E-value=1.7e-10 Score=82.15 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHH------HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEE
Q 046954 44 SVGQAQRVALAR------TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLL 116 (146)
Q Consensus 44 SgG~~qrv~ia~------al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l 116 (146)
|+|++|++.++. +++.+|+...+|+ ++|+..... ++.+..+. +.+.++|.+||. ++.+.++||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--
Confidence 888888888888 8899998888884 899988888 88888774 347899999999 999999999999
Q ss_pred ECCEEEEeeCcccc
Q 046954 117 VNGEIVEVLKPDLL 130 (146)
Q Consensus 117 ~~G~i~~~g~~~~~ 130 (146)
++|+++..|+++-+
T Consensus 169 ~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 169 TNPRFIFCMAGDPL 182 (189)
T ss_dssp HCGGGSCC------
T ss_pred hCCcEEEeecCCch
Confidence 99999999988654
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.44 E-value=1.7e-07 Score=66.03 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=41.5
Q ss_pred HHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 56 TLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 56 al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
..+.+|++|++|||++ ++|+..+..+.+++.+..+ .|+++|++||...
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 3456999999999995 9999999999999988764 5899999999864
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.42 E-value=6.6e-09 Score=81.49 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=68.1
Q ss_pred cCCCChhHHHHHHHHHHHh-cCCCEEEeeC---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 40 GAEISVGQAQRVALARTLA-NEPEVLLLDE---PT------SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~-~~p~llllDE---Pt------~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.|.++.++.|.++++++|. ....++
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~ 334 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRY 334 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHH
Confidence 4456778888888888774 6999999999 65 58999999999999999876568999999976 577788
Q ss_pred cCeEEEEECCEEEEeeCcccccc
Q 046954 110 ADVVCLLVNGEIVEVLKPDLLSE 132 (146)
Q Consensus 110 ~d~v~~l~~G~i~~~g~~~~~~~ 132 (146)
++++.++++ ++..++++++.+
T Consensus 335 ~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 335 NQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHHHHH--HhcccchhHhhc
Confidence 888887755 555667777644
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.28 E-value=3.2e-06 Score=68.05 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=62.4
Q ss_pred cCCCChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEec--------
Q 046954 40 GAEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDP--------ISTQNIEDVLVKLKKKHGMTIVMVSH-------- 101 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~--~~p~llllDEPt~~LD~--------~~~~~~~~~l~~l~~~~g~tvi~itH-------- 101 (146)
...+|.++.+ +.++.++ .+|+++++|+++...+. .....+...|+.++++.|++||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~ 370 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR 370 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 4578999876 5566665 78999999999987743 34467778888888888999999999
Q ss_pred -C--HH--------HHHhhcCeEEEEECCEE
Q 046954 102 -S--IK--------QIQRIADVVCLLVNGEI 121 (146)
Q Consensus 102 -~--~~--------~~~~~~d~v~~l~~G~i 121 (146)
+ +. .+...||.|++|..++.
T Consensus 371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 32 47788999999987654
No 120
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.24 E-value=7.1e-06 Score=59.78 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=48.4
Q ss_pred cCCCEEEeeCCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------HHhhcCeEEEEEC
Q 046954 59 NEPEVLLLDEPTSAL--DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVN 118 (146)
Q Consensus 59 ~~p~llllDEPt~~L--D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~--------~~~~~d~v~~l~~ 118 (146)
.+|+++++|+|++.+ |+.....++..+.+++++.|+|||+++|.... +..+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 689999999999988 66566677777777766779999999998776 5688999999974
No 121
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.23 E-value=3.7e-07 Score=70.22 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
++...+||++||||++.+|+.++| .||+.+...+.+.++++.+..|.|+|++||+.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 455669999999999999995544 55655556677777777665699999999984
No 122
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.17 E-value=1.6e-06 Score=72.42 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=55.7
Q ss_pred HHhcCCCEEEeeCC------CCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHH--------HHhh----cCeEEEE
Q 046954 56 TLANEPEVLLLDEP------TSALDPISTQNIEDVLVKLKK-KHGMTIVMVSHSIKQ--------IQRI----ADVVCLL 116 (146)
Q Consensus 56 al~~~p~llllDEP------t~~LD~~~~~~~~~~l~~l~~-~~g~tvi~itH~~~~--------~~~~----~d~v~~l 116 (146)
+....|+++|+||| |+|||+..+..+.+++.++.+ ..+.++++++|+++. +..+ ...|+++
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 33457999999999 999999999999999999643 347889999999762 2222 2457888
Q ss_pred ECCEEEEeeCcc
Q 046954 117 VNGEIVEVLKPD 128 (146)
Q Consensus 117 ~~G~i~~~g~~~ 128 (146)
.++.++..|+.+
T Consensus 222 TK~Dlv~~g~~~ 233 (608)
T 3szr_A 222 TKPDLVDKGTED 233 (608)
T ss_dssp ECGGGSSSSSTT
T ss_pred cchhhcCcccHH
Confidence 888877766654
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.06 E-value=1.2e-06 Score=69.12 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 50 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
+.+|+++|..+|+++++|||+ |+.... ..++.. ..|.+++.++|+.+ +...+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~--~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA--ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH--TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH--hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 579999999999999999999 776543 334433 34899999999965 66777776433
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.05 E-value=7.7e-06 Score=56.35 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEEecC
Q 046954 56 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT-IVMVSHS 102 (146)
Q Consensus 56 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t-vi~itH~ 102 (146)
+++.+|++|++|||++ ++...+..+++++.++.+ .|++ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 4577999999999998 666668999999998865 4788 8888884
No 125
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=3e-06 Score=65.27 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=42.0
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH-HhhcCeEE
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI-QRIADVVC 114 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~-~~~~d~v~ 114 (146)
+..+|+++|+|||++ ||+.+...+.+.+.+.. .+.++|++||++..+ ..+.+|+.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~~ 186 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKSQCL 186 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHTTSE
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHhhce
Confidence 466899999999999 99999999999998864 378999999997532 23344543
No 126
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.02 E-value=2.5e-05 Score=61.07 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcC--CCEEEeeCCCCCC----------CH---HHHHHHHHHHHHH---HHhcCCeEEEEecCHH-----
Q 046954 48 AQRVALARTLANE--PEVLLLDEPTSAL----------DP---ISTQNIEDVLVKL---KKKHGMTIVMVSHSIK----- 104 (146)
Q Consensus 48 ~qrv~ia~al~~~--p~llllDEPt~~L----------D~---~~~~~~~~~l~~l---~~~~g~tvi~itH~~~----- 104 (146)
.+-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+.++ +++.|++||+++|...
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~ 204 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVM 204 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence 3456778888755 9999999999998 32 1223444555544 3567999999999643
Q ss_pred -----------HHHhhcCeEEEEECCEEEEeeC
Q 046954 105 -----------QIQRIADVVCLLVNGEIVEVLK 126 (146)
Q Consensus 105 -----------~~~~~~d~v~~l~~G~i~~~g~ 126 (146)
.+..+||.++.++.+++...|+
T Consensus 205 ~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 205 FGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567899999998876654443
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.92 E-value=4.9e-07 Score=66.85 Aligned_cols=50 Identities=24% Similarity=0.182 Sum_probs=43.5
Q ss_pred hhcCCcCCCChhHHHHHHHHHHH-hcCCCEEEee----CCCCCCCHHHHHHHHHHHHHHHHh
Q 046954 35 FLSKTGAEISVGQAQRVALARTL-ANEPEVLLLD----EPTSALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 35 ~~~~~~~~LSgG~~qrv~ia~al-~~~p~llllD----EPt~~LD~~~~~~~~~~l~~l~~~ 91 (146)
..++++.+||| |+ +|+ +.+|+++++| |||++||+.+...+.+.+.++.++
T Consensus 145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 44677889999 55 777 9999999999 999999999999999999988653
No 128
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.86 E-value=1.3e-06 Score=70.03 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=42.6
Q ss_pred CCChhHHHHHHHHHHHhcCCC---EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 42 EISVGQAQRVALARTLANEPE---VLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~---llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.++.+++||++|||+++.+|+ ++++|||| .+||+... .+++.+. . +..+|+|.|..+
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~D 178 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEccc
Confidence 356677889999999999999 99999999 69998874 4455554 3 788888888765
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.84 E-value=6.9e-07 Score=68.86 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
++|+||+||+..+++++.+|+++ ||| ..+.+.+++++ .+.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHH
Confidence 79999999999889999999987 998 77888888874 389999999965444333
No 130
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.75 E-value=6.2e-06 Score=65.98 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=47.5
Q ss_pred cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
+.++.+||+|++|++.+|++|+..|.++++ +.+|+... ...+.+.+..++.|.+++++|.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 345678999999999999999999999999 99999877 4455555544445778777663
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.66 E-value=5.8e-07 Score=68.66 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=33.4
Q ss_pred cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHH
Q 046954 37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 77 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 77 (146)
..+...+||||+||+.+|++.+.+|+++|+|||++++|+..
T Consensus 129 p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 129 PKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred ccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 34557899999999999733333999999999999999853
No 132
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.60 E-value=2.4e-05 Score=66.96 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=58.3
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHhhcCeE
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMV-SHSIKQIQRIADVV 113 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~i-tH~~~~~~~~~d~v 113 (146)
+.-+|.|+.+|..+++.++.+++++|+|||.. +||......+++.+..... ...+|+++ ||+.+.+.++++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 44578999999999999999999999999996 9998877666666655432 24677774 99998888888753
No 133
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.55 E-value=2.1e-06 Score=70.44 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=58.2
Q ss_pred HHHHHcCCChhhhc---CCcCCCChhHHHHH----------HHHHHHhcCCC-EEEeeCCCCCCCHHHHHHHHHHHHHH-
Q 046954 24 KLLSLADLDSSFLS---KTGAEISVGQAQRV----------ALARTLANEPE-VLLLDEPTSALDPISTQNIEDVLVKL- 88 (146)
Q Consensus 24 ~~l~~~~l~~~~~~---~~~~~LSgG~~qrv----------~ia~al~~~p~-llllDEPt~~LD~~~~~~~~~~l~~l- 88 (146)
+++...|+. ++.. +....+|+||+|+. ++++++...|. ++++||+++.++.. ...+.+.|.++
T Consensus 248 ~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~La 325 (512)
T 2ius_A 248 KLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLA 325 (512)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHH
Confidence 455666653 2221 22235788887752 35666778898 89999999988733 34455555554
Q ss_pred --HHhcCCeEEEEecCHH-------HHHhhcCeEEE
Q 046954 89 --KKKHGMTIVMVSHSIK-------QIQRIADVVCL 115 (146)
Q Consensus 89 --~~~~g~tvi~itH~~~-------~~~~~~d~v~~ 115 (146)
.+..|.++|++||++. ....+.+||.+
T Consensus 326 r~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 326 QKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 3445889999999987 44566677655
No 134
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.50 E-value=0.00014 Score=59.15 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=57.0
Q ss_pred CCcCCCChhHHHHHHHHH--HHhc---------------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 38 KTGAEISVGQAQRVALAR--TLAN---------------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~--al~~---------------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+..+.+||||+|-.-+|. ++++ .-.++++||. +-+|....+..+++++++ |.-+|++|
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiat 449 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAA 449 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEEC
Confidence 346789999999654444 3322 1258999999 999999999999998764 89999999
Q ss_pred cCHHHHHhhcCeEEEEE
Q 046954 101 HSIKQIQRIADVVCLLV 117 (146)
Q Consensus 101 H~~~~~~~~~d~v~~l~ 117 (146)
-+ .+..+.|.++.+-
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 88 6777788887764
No 135
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.32 E-value=2.6e-07 Score=73.49 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=56.7
Q ss_pred CC--CEEEeeCCCCCCCHHHHHHHHHHHHHH-HHhcCCeEEEEecCHHHHHhhcCeEE-EEECC-EEEEeeCc
Q 046954 60 EP--EVLLLDEPTSALDPISTQNIEDVLVKL-KKKHGMTIVMVSHSIKQIQRIADVVC-LLVNG-EIVEVLKP 127 (146)
Q Consensus 60 ~p--~llllDEPt~~LD~~~~~~~~~~l~~l-~~~~g~tvi~itH~~~~~~~~~d~v~-~l~~G-~i~~~g~~ 127 (146)
+| ++.++|||+.++|+...+..++.+.+. .+ .|.|++ +|.+..+..+|+++. +|++| +++..++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 89 999999999999999999999999887 54 477764 999999999999999 99999 88765543
No 136
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00048 Score=50.23 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=45.5
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEEeeCcccc
Q 046954 54 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 130 (146)
Q Consensus 54 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 130 (146)
+..++..++++||| ||+.+...+.+.+. .+.+|+++||+++++.+ |+ +.+| .++++++
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVI 158 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence 45566678999999 99999999999875 38999999999998876 33 6667 3455544
No 137
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.08 E-value=6.3e-06 Score=58.23 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCEE-------EeeCCCC---CCCHHHHHHHHHHHHHHHHh
Q 046954 42 EISVGQAQRVALARTLANEPEVL-------LLDEPTS---ALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~ll-------llDEPt~---~LD~~~~~~~~~~l~~l~~~ 91 (146)
.|||||+||++||||++.+|++. .-|.|.. -+|......+.+.+.+..++
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 49999999999999999999873 2345432 24455667788887766554
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.00 E-value=0.0011 Score=51.69 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=46.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEec
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSH 101 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~-g~tvi~itH 101 (146)
+.||.++++|+..|...+.+++++|.|+|... ...+...++++.++. |..+|+|-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 57999999999999999999999999998754 336677777777666 788888864
No 139
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.98 E-value=0.0018 Score=52.64 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeCCC----------CCCCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHHH
Q 046954 45 VGQAQRVALARTLANEPEVLLLDEPT----------SALDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 45 gG~~qrv~ia~al~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~~ 106 (146)
+++++|..+++|....|.+|++||+. +|.|......+.+++..+- ...+..||.+||.++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67788999999999999999999993 4677776666667766653 23478999999998643
No 140
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.97 E-value=0.00045 Score=52.65 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH--HhcCCeEEE-EecCHHHHHhhcCeEEEEECCEEEE
Q 046954 47 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVM-VSHSIKQIQRIADVVCLLVNGEIVE 123 (146)
Q Consensus 47 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~--~~~g~tvi~-itH~~~~~~~~~d~v~~l~~G~i~~ 123 (146)
..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ...+..+++ .+|..+.+.++++++..+..|.++.
T Consensus 171 ~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 171 EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 334555554 4999999999 99999877765555443322 112333444 4999999999999887777777765
Q ss_pred e
Q 046954 124 V 124 (146)
Q Consensus 124 ~ 124 (146)
.
T Consensus 247 t 247 (296)
T 2px0_A 247 T 247 (296)
T ss_dssp E
T ss_pred e
Confidence 3
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.89 E-value=9.9e-05 Score=51.78 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=37.4
Q ss_pred cCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954 37 SKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 89 (146)
Q Consensus 37 ~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~ 89 (146)
+.++..+|+|++|+++++|++.++|+++ +|+...+.+.+.+..+.
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 3456689999999999999999999876 68888888888777664
No 142
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.002 Score=49.34 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHH---HHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRV---ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 89 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv---~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~ 89 (146)
...+.+..+++ . ...+|+|+.+++ ++++++..+|+++|+|+|.. ......+++.+.++.
T Consensus 151 L~~~~~~~gl~--~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 151 LKIWGERVGAT--V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHTCE--E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc--E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 34556666663 1 236789999999 89999999999999999974 344555555555543
No 143
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0037 Score=48.46 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=50.0
Q ss_pred CCcCCCChhHHHHHHHHHHHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe--cCHH
Q 046954 38 KTGAEISVGQAQRVALARTLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS--HSIK 104 (146)
Q Consensus 38 ~~~~~LSgG~~qrv~ia~al~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it--H~~~ 104 (146)
.++..+|+|++|.+. +.+...++-++++| +|.+++|......+...+..... +..+|++. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 445678999998776 55555677789999 99999999998888887776542 78888888 8864
No 144
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.45 E-value=0.0089 Score=45.33 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCC-CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 44 SVGQAQRVALARTLANEPEVLLLDEP-TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 44 SgG~~qrv~ia~al~~~p~llllDEP-t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+..+.+|.+++.+...+++++|+||| +.++|......+......+. ...+++++.
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~~ 219 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVLD 219 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEEe
Confidence 34456788999998899999999999 99999988888877766653 234444443
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.45 E-value=0.0017 Score=50.48 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHH---hc--CCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 046954 42 EISVGQAQRVALARTL---AN--EPEVLLLDEPTSALDPISTQNIEDVLVKL 88 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al---~~--~p~llllDEPt~~LD~~~~~~~~~~l~~l 88 (146)
.+|+|++||.+++++| .. ++.++++|||+ ....+.+.+..+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~------~~~r~~~~i~~i 341 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS------YLDRYNQVKAVI 341 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS------HHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC------HHHHHHHHHHHH
Confidence 5899999999999999 66 89999999996 344444444443
No 146
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.87 E-value=0.023 Score=43.79 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH---------HHHHhhcCeEEEEEC
Q 046954 48 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI---------KQIQRIADVVCLLVN 118 (146)
Q Consensus 48 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~---------~~~~~~~d~v~~l~~ 118 (146)
.+.-.+++++..++.++++|.++. ..+.+.++.+.+..+.|+|++||.- +.+....-.|.++..
T Consensus 231 ~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~ 303 (328)
T 3e70_C 231 DEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGV 303 (328)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeC
Confidence 444558899988888888885554 4566667777666799999999953 234455667888888
Q ss_pred CEEE
Q 046954 119 GEIV 122 (146)
Q Consensus 119 G~i~ 122 (146)
|+-+
T Consensus 304 Ge~v 307 (328)
T 3e70_C 304 GQGY 307 (328)
T ss_dssp SSST
T ss_pred CCCc
Confidence 8654
No 147
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.67 E-value=0.0022 Score=50.02 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCE
Q 046954 44 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 44 SgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~ 120 (146)
+++..++..|+.++..+|+.+++|||.. ....+.+..+.. ...|++.++|..+ +...++|+..+..|.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 3666788999999999999999999986 245566776643 2357899999965 777788888887663
No 148
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.58 E-value=0.019 Score=43.87 Aligned_cols=100 Identities=11% Similarity=0.163 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCChh-hhcC-C-cCCCChhH-HHHHHHHHHHh---cCCCEEEeeCCCCCCCH--------H----HHH
Q 046954 19 ENEVYKLLSLADLDSS-FLSK-T-GAEISVGQ-AQRVALARTLA---NEPEVLLLDEPTSALDP--------I----STQ 79 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~-~~~~-~-~~~LSgG~-~qrv~ia~al~---~~p~llllDEPt~~LD~--------~----~~~ 79 (146)
.+++...++.++++.. +.++ . ....+..+ .+.+..++.++ .+|+++++|+.++-... . ...
T Consensus 155 ~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~ 234 (324)
T 2z43_A 155 WERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLN 234 (324)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHH
Confidence 4566666777777421 1111 1 11233332 35667777777 67999999999876532 1 134
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCHHH----------------HHhhcCeEEEEEC
Q 046954 80 NIEDVLVKLKKKHGMTIVMVSHSIKQ----------------IQRIADVVCLLVN 118 (146)
Q Consensus 80 ~~~~~l~~l~~~~g~tvi~itH~~~~----------------~~~~~d~v~~l~~ 118 (146)
++...|++++++.|++||++.|-... +...+|.++.|+.
T Consensus 235 ~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 235 KHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 55666777777789999999886432 3446777788764
No 149
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.35 E-value=0.032 Score=42.50 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe--EEEEec
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT--IVMVSH 101 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t--vi~itH 101 (146)
||.++++|+..|...+.++++++.|+|... ...+...++++.++.|.. +|+|.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999998643 345666777776666777 888865
No 150
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.35 E-value=0.0088 Score=47.92 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH-HHHhcCCeEEEEecC
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHS 102 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~-l~~~~g~tvi~itH~ 102 (146)
.|+-.+ +.|+++|..+++++++|+|+..|.+.....+.+.+.+ +. ..|.+|++++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 455555 7899999999999999999999999999999999987 64 569999999975
No 151
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.33 E-value=0.15 Score=39.59 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=47.8
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCCHH-------------HHHHHHHH---HHHHHHhcCCeEEEEecCHH------
Q 046954 49 QRVALARTLA--NEPEVLLLDEPTSALDPI-------------STQNIEDV---LVKLKKKHGMTIVMVSHSIK------ 104 (146)
Q Consensus 49 qrv~ia~al~--~~p~llllDEPt~~LD~~-------------~~~~~~~~---l~~l~~~~g~tvi~itH~~~------ 104 (146)
+...+++.++ .+|+++++|.+++-.... ..+.+.+. |..++++.|++||++.|-..
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 4456666664 689999999999876421 11233344 44445677999999998543
Q ss_pred ----------HHHhhcCeEEEEECCEEE
Q 046954 105 ----------QIQRIADVVCLLVNGEIV 122 (146)
Q Consensus 105 ----------~~~~~~d~v~~l~~G~i~ 122 (146)
.+..++|-++.++..+..
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 245678888888776543
No 152
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=95.22 E-value=4.3e-05 Score=62.48 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=52.7
Q ss_pred HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH--HhhcCeEEEEECCEEEEe-eCccc
Q 046954 55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI--QRIADVVCLLVNGEIVEV-LKPDL 129 (146)
Q Consensus 55 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~--~~~~d~v~~l~~G~i~~~-g~~~~ 129 (146)
|||..| ++||+ ||++.+|| .+..+.. ++.+..++++.+++|+++.+ .++++++..+..+.++.. +++++
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~ 99 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEF 99 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHH
Confidence 899999 99999 99999999 4433332 34445578899999999998 888999988877777643 34443
No 153
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.13 E-value=5.5e-06 Score=67.90 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE--EecCHHHHHhhcCe
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM--VSHSIKQIQRIADV 112 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~--itH~~~~~~~~~d~ 112 (146)
..+|+||+||.+++. + | ++|||+...+.+++.+.++.+ .|.|+++ +||+++++...|+.
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcCC
Confidence 457999998876641 1 7 999999988888888777754 4889885 99999999988864
No 154
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.12 E-value=0.34 Score=37.72 Aligned_cols=70 Identities=7% Similarity=0.066 Sum_probs=48.8
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCC-H---------------HHHHHHHHHHHHHHHhcCCeEEEEecC--------
Q 046954 49 QRVALARTLA--NEPEVLLLDEPTSALD-P---------------ISTQNIEDVLVKLKKKHGMTIVMVSHS-------- 102 (146)
Q Consensus 49 qrv~ia~al~--~~p~llllDEPt~~LD-~---------------~~~~~~~~~l~~l~~~~g~tvi~itH~-------- 102 (146)
+-+.+++.++ .+|+++++|.-++-.. . ....+++..|..++++.|++||++.|-
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 4456666665 5799999998665543 1 122344555667777789999999987
Q ss_pred --------HHHHHhhcCeEEEEEC
Q 046954 103 --------IKQIQRIADVVCLLVN 118 (146)
Q Consensus 103 --------~~~~~~~~d~v~~l~~ 118 (146)
...+..++|-++.++.
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEe
Confidence 2336678899999985
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.02 E-value=0.015 Score=40.54 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 49 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
+.+.+|++++.+|+++++| ||++|..+...+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999998865
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.00 E-value=0.043 Score=43.81 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=45.5
Q ss_pred cCCCEEEeeCCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEE-EECCEEEEeeCc
Q 046954 59 NEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCL-LVNGEIVEVLKP 127 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~-~~~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~-l~~G~i~~~g~~ 127 (146)
.+|++|++||+..-.+. ..+..++..+..+.. .|+.+|++||+. ..+..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38999999999877664 678889999988864 589999999983 222222222222 345655554444
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.85 E-value=0.0025 Score=48.95 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=44.2
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCe
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 112 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~ 112 (146)
...++..||+|++||+.++ .+||+.+...+.++|++.++..+ ++|+.+.+..++++
T Consensus 156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 4566789999999998554 78999999999999999876545 36887777777664
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.53 E-value=0.048 Score=41.74 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=38.5
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHhh
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--HGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--~g~tvi~itH~~~~~~~~ 109 (146)
.+|.++++||+... |+.....+...+.++... .+.++|+++|+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45889999999876 888888888888766431 378999999998655443
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.32 E-value=0.049 Score=39.09 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHHHHHHHHHh--cCCCEEEeeCCCC--CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEEECCE
Q 046954 48 AQRVALARTLA--NEPEVLLLDEPTS--ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 48 ~qrv~ia~al~--~~p~llllDEPt~--~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l~~G~ 120 (146)
+.....++..+ .+.+++||||.+. .++......++++|.+. -.+..||+++++ +..+.+.||-|--|+.-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 33444455556 4579999999976 35555566788887753 247899999988 456788999998886543
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.24 E-value=0.0023 Score=45.58 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=43.2
Q ss_pred HHH-HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEEC
Q 046954 53 LAR-TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 118 (146)
Q Consensus 53 ia~-al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~ 118 (146)
.++ +++.+|++++||||++++|..+.+.+.+.|....++ +.+.|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence 455 678888899999999999999999999999887643 233452 1 56898877653
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.01 E-value=1.8e-05 Score=59.40 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCE--EEeeCCCCCCCHHHH---------HHHHHHHHHHHHhcCCeEEEEecC
Q 046954 41 AEISVGQAQRVALARTLANEPEV--LLLDEPTSALDPIST---------QNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~l--lllDEPt~~LD~~~~---------~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..+|+| ||+++++++..+|++ +|+||+|+.+|...+ ....+.+..+. .|.|.+.+.|.
T Consensus 171 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~g~t~~~~a~r 239 (261)
T 2eyu_A 171 LPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK--QGLITLEDAME 239 (261)
T ss_dssp ECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH--TTSSCHHHHHH
T ss_pred EecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence 357888 899999999999999 999999999997632 23444555543 38776655443
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.81 E-value=0.11 Score=38.48 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHH----------HHHHHHHHHHHHHHh---cCCeEEEEecCHH
Q 046954 44 SVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------STQNIEDVLVKLKKK---HGMTIVMVSHSIK 104 (146)
Q Consensus 44 SgG~~qrv~ia~al~~~p~llllDEPt~~LD~~----------~~~~~~~~l~~l~~~---~g~tvi~itH~~~ 104 (146)
+++++.+..+..+...+|.+|++||+.+.++.. ....++..+..+... .+..+|.+|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 467788888899989999999999998776532 222344444332110 2456788888753
No 163
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.71 E-value=0.03 Score=43.15 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=40.8
Q ss_pred CCCChhHHHHHHHHHHHhc------CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Q 046954 41 AEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~------~p~llllDEPt~~LD~~~~~~~~~~l~~l~~ 90 (146)
..+|+|++|++..+++++. .|+++. +|++|..+...+++.|.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999987 688876 999999999999999998754
No 164
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.67 E-value=0.1 Score=40.18 Aligned_cols=101 Identities=8% Similarity=0.120 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCChh-hhcC-C-cCCCChhH-HHHHHHHHHHh----cCCCEEEeeCCCCCCCHH------------HH
Q 046954 19 ENEVYKLLSLADLDSS-FLSK-T-GAEISVGQ-AQRVALARTLA----NEPEVLLLDEPTSALDPI------------ST 78 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~-~~~~-~-~~~LSgG~-~qrv~ia~al~----~~p~llllDEPt~~LD~~------------~~ 78 (146)
.+++...++.+++... ..++ . ....++.+ .+.+..++.++ .+++++++|+.++-.... ..
T Consensus 170 ~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l 249 (343)
T 1v5w_A 170 PDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 249 (343)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHH
Confidence 4556666677776421 1111 1 11233433 34455555665 679999999999866432 13
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHH-------------------HHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIKQ-------------------IQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~~-------------------~~~~~d~v~~l~~G 119 (146)
..+...|++++++.|++||+++|.... +..++|-++.|+..
T Consensus 250 ~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~ 309 (343)
T 1v5w_A 250 AQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKG 309 (343)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEc
Confidence 456666777777789999999996542 33456778888743
No 165
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.48 E-value=0.013 Score=45.77 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.7
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTL 57 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al 57 (146)
+.++++.+++. .+.+.++.+|| ||+||++||+++
T Consensus 295 ~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 295 FVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp SGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC
Confidence 45677888885 57889999999 999999999875
No 166
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.30 E-value=0.22 Score=39.57 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=47.6
Q ss_pred HHHHHHh--cCCCEEEeeCCCCCCCH----------HHHHHHHHHHHHHHHhcCCeEEEEecCHH---------------
Q 046954 52 ALARTLA--NEPEVLLLDEPTSALDP----------ISTQNIEDVLVKLKKKHGMTIVMVSHSIK--------------- 104 (146)
Q Consensus 52 ~ia~al~--~~p~llllDEPt~~LD~----------~~~~~~~~~l~~l~~~~g~tvi~itH~~~--------------- 104 (146)
+.++.+. .+|+++++|..+.-... .....+...|+.++++.|++||+++|--.
T Consensus 300 ~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dl 379 (444)
T 2q6t_A 300 ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDL 379 (444)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGG
T ss_pred HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHh
Confidence 3444444 58999999988764432 12346777788888888999999998211
Q ss_pred ----HHHhhcCeEEEEEC
Q 046954 105 ----QIQRIADVVCLLVN 118 (146)
Q Consensus 105 ----~~~~~~d~v~~l~~ 118 (146)
.+...||.|++|..
T Consensus 380 r~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 380 RESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCTTGGGCSEEEEEEE
T ss_pred cchhHHHHhCCEEEEEec
Confidence 35678999999953
No 167
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.95 E-value=0.00052 Score=49.13 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=39.0
Q ss_pred cCCCChhHHHHHHHH-HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH-HHhhcCe
Q 046954 40 GAEISVGQAQRVALA-RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADV 112 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia-~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~-~~~~~d~ 112 (146)
...+|+||+|+++++ ++++.++.++++|||... ++.. .--.+++++++.+. +.+...|
T Consensus 109 ~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~--------------~l~~-~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 109 ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR--------------DLTA-IWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG--------------GGGG-TCSEEEEECCCHHHHHHHHHHH
T ss_pred cccCCCCCceEEcCCCcEEEECCceeccCCchhH--------------HHHH-hcCEEEEEeCCHHHHHHHHHHH
Confidence 346799999999998 888888888888888410 1111 12366777777665 4555555
No 168
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.92 E-value=0.00044 Score=51.99 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC------------CCCHHHHHHHHHHH
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTS------------ALDPISTQNIEDVL 85 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~------------~LD~~~~~~~~~~l 85 (146)
.++.+.+|||||+|++.|++|+.++|++| |||+. --|...+..+++.+
T Consensus 131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 44556789999999999999999999975 99874 23566666665544
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.87 E-value=0.077 Score=36.93 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954 51 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 89 (146)
Q Consensus 51 v~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~ 89 (146)
...|++++.+|++.++| ||++|..+...+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
No 170
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.32 E-value=4.7e-05 Score=59.90 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCE--EEeeCCCCCCCHHH---H-----H-HHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 42 EISVGQAQRVALARTLANEPEV--LLLDEPTSALDPIS---T-----Q-NIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~l--lllDEPt~~LD~~~---~-----~-~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+|+| ||+++++++..+|++ +|+||+|+.||... . + ...+.+..+ . .|.|.+.+.|.+.
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~-~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY-K-QGLITLEDAMEAS 352 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT-T-TSSSCTTTTTSSC
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH-H-CCCCCHHHHHHHc
Confidence 45888 889999999999999 99999999998651 1 2 233334433 3 3888877777654
No 171
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.23 E-value=0.016 Score=43.95 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHH
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALAR 55 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~ 55 (146)
..++.++++.++++....++++..|||.++++++|||
T Consensus 264 ~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 264 GCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp TCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568899999999744778899999998899999986
No 172
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.86 E-value=0.14 Score=42.51 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=54.9
Q ss_pred cCCCChh-HHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH---------hh
Q 046954 40 GAEISVG-QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ---------RI 109 (146)
Q Consensus 40 ~~~LSgG-~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~---------~~ 109 (146)
.+.|+.+ ++|...+++.++.+|.-++++.+++++|..+. ...++++++....+.||+++||- +.+. -+
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK~-Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTKP-DLVDKGTEDKVVDVV 239 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEECG-GGSSSSSTTCCCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecch-hhcCcccHHHHHHHH
Confidence 5566544 45888899999999999999999999998854 46777777754435788888882 3332 22
Q ss_pred cCeEEEEECCEEE
Q 046954 110 ADVVCLLVNGEIV 122 (146)
Q Consensus 110 ~d~v~~l~~G~i~ 122 (146)
.++++.++.|-++
T Consensus 240 ~~~~~~l~~g~~~ 252 (608)
T 3szr_A 240 RNLVFHLKKGYMI 252 (608)
T ss_dssp --CCSCCSSCEEC
T ss_pred hCcccccCceEEE
Confidence 3445556666553
No 173
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.78 E-value=0.0037 Score=49.89 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEE
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLL 65 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 65 (146)
+...+..+++.. +. .+.+|||||+|| |||+++.+|++..
T Consensus 276 ~i~rL~~lgl~~-~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 276 AVTRLRDMGIEP-FL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHHHTCCH-HH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHcCCcH-HH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 334566778853 32 567899999999 9999999999875
No 174
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.75 E-value=0.71 Score=33.46 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=38.6
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec---------C-HHHHHhhcCeEEEEE
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH---------S-IKQIQRIADVVCLLV 117 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH---------~-~~~~~~~~d~v~~l~ 117 (146)
+|+++++||-.. |+.. +.+.+..+++ .|..||++.| . ...+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 4455566665 4999999999 2 456777999998753
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.60 E-value=0.018 Score=40.66 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH--HhhcCeEEEEEC
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI--QRIADVVCLLVN 118 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~--~~~~d~v~~l~~ 118 (146)
.|.|+.+|..++..+..+|+.+... .+.++|.....+.+.+... .+.++|+.+|.+.+. ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999988888654333 3355666666655554332 255888889987665 677899998854
No 176
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.39 E-value=1.5 Score=34.10 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCCeEEEEecCHHH-----
Q 046954 49 QRVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVKL---KKKHGMTIVMVSHSIKQ----- 105 (146)
Q Consensus 49 qrv~ia~al~--~~p~llllDEPt~~LD-~------------~~~~~~~~~l~~l---~~~~g~tvi~itH~~~~----- 105 (146)
+.+.+++.++ .+++++++|..++-.. . ...+.+.+.++++ +++.+++||++.|-...
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 4456667665 5789999999887541 0 1123344555554 56779999999886431
Q ss_pred -----------HHhhcCeEEEEECCE
Q 046954 106 -----------IQRIADVVCLLVNGE 120 (146)
Q Consensus 106 -----------~~~~~d~v~~l~~G~ 120 (146)
+..++|-++.|+.++
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEEES
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 356788888887554
No 177
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.26 E-value=0.21 Score=38.86 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHHcCCChh---hhcCCcCCCChhHHHHHHHH----HHH-hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh
Q 046954 22 VYKLLSLADLDSS---FLSKTGAEISVGQAQRVALA----RTL-ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 22 ~~~~l~~~~l~~~---~~~~~~~~LSgG~~qrv~ia----~al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~ 91 (146)
+..+++.+++... ....++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...+.+.|.++...
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 3456666654311 11344667898888888877 555 434454 899999999999999999886543
No 178
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.11 E-value=0.72 Score=34.75 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCChh-hhcC-CcC-CCChhH-HHHHHHHHHHh---cCCCEEEeeCCCCCCC--------HH----HHH
Q 046954 19 ENEVYKLLSLADLDSS-FLSK-TGA-EISVGQ-AQRVALARTLA---NEPEVLLLDEPTSALD--------PI----STQ 79 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~-~~~~-~~~-~LSgG~-~qrv~ia~al~---~~p~llllDEPt~~LD--------~~----~~~ 79 (146)
.+++...++.++++.. +.++ .+. ..+..+ .+-+..++.++ .+|+++++|.-++-.. .. ...
T Consensus 156 ~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~ 235 (322)
T 2i1q_A 156 PERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLG 235 (322)
T ss_dssp HHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHH
Confidence 4566666677776421 1111 111 223332 23344455555 4689999998775431 11 124
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCH---H-------------HHHhhcCeEEEEECC
Q 046954 80 NIEDVLVKLKKKHGMTIVMVSHSI---K-------------QIQRIADVVCLLVNG 119 (146)
Q Consensus 80 ~~~~~l~~l~~~~g~tvi~itH~~---~-------------~~~~~~d~v~~l~~G 119 (146)
++...|+.++++.|++||++.|-. + .+...+|.++.|+..
T Consensus 236 ~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 236 RHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 556667777778899999988732 1 366788999999744
No 179
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.98 E-value=0.54 Score=36.44 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=45.7
Q ss_pred cCCCEEEeeCCCCCCC---HHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH------------hhcCeEEEEECC
Q 046954 59 NEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ------------RIADVVCLLVNG 119 (146)
Q Consensus 59 ~~p~llllDEPt~~LD---~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~------------~~~d~v~~l~~G 119 (146)
..|.++++||--.-++ +.....+.+.+++.+ +.|..++++||++..+. ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999988884 667777888888875 57999999999987543 445566666544
No 180
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.27 E-value=0.079 Score=43.89 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
+.+|+|++|++..++....++.+|++||... |++..+..+.+.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999988 899999988888875
No 181
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.90 E-value=0.076 Score=40.37 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=27.7
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH--HhcCCeEEEEecCHHHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~--~~~g~tvi~itH~~~~~ 106 (146)
.|.++++||+....+......+..++..+. ...+.++|++||+....
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 388999999987653321223333333331 23367899999987643
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.80 E-value=1 Score=33.73 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=32.6
Q ss_pred hcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..+|++|++||+.. ..+...+..+...+..+.. .|..+|++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 35799999999865 3344778888889888764 46777777663
No 183
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.34 E-value=0.71 Score=31.99 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=26.6
Q ss_pred hcCCCEEEeeCCCC-CCCHHHHHHHH-HHHHHHHHhcCCeEEEEec-CHHHHHh
Q 046954 58 ANEPEVLLLDEPTS-ALDPISTQNIE-DVLVKLKKKHGMTIVMVSH-SIKQIQR 108 (146)
Q Consensus 58 ~~~p~llllDEPt~-~LD~~~~~~~~-~~l~~l~~~~g~tvi~itH-~~~~~~~ 108 (146)
+.++++|++||+-. .++...+..++ .++...... +..+|++|+ ++..+..
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~-~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFE-NLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHT-TCCEEEEESSCHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCCCHHHHHH
Confidence 45678999999933 34443344344 455554333 455555555 5555443
No 184
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.11 E-value=3.4 Score=31.09 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=45.7
Q ss_pred HHHHHHh--cCCC--EEEeeCCCCCC------C-HHHHHHHHHHHHHHHHhcCCeEEEEecCH-----------------
Q 046954 52 ALARTLA--NEPE--VLLLDEPTSAL------D-PISTQNIEDVLVKLKKKHGMTIVMVSHSI----------------- 103 (146)
Q Consensus 52 ~ia~al~--~~p~--llllDEPt~~L------D-~~~~~~~~~~l~~l~~~~g~tvi~itH~~----------------- 103 (146)
+.++.+. .+++ ++++|--+.-- + ......+...|+.++++.|++||+++|--
T Consensus 169 ~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr 248 (315)
T 3bh0_A 169 SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLR 248 (315)
T ss_dssp HHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGT
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhh
Confidence 3444444 3688 99999543211 1 13345667778888888899999999932
Q ss_pred --HHHHhhcCeEEEEEC
Q 046954 104 --KQIQRIADVVCLLVN 118 (146)
Q Consensus 104 --~~~~~~~d~v~~l~~ 118 (146)
..++..||-|++|..
T Consensus 249 ~sg~ie~~aD~vi~L~r 265 (315)
T 3bh0_A 249 ESGQLEQDADIIEFLYR 265 (315)
T ss_dssp TTSHHHHHCSEEEEEEE
T ss_pred hhhhhHhhCCEEEEEec
Confidence 136778999999963
No 185
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.17 E-value=0.49 Score=35.58 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHHh--cCCCEEEeeCCCCCCCHHH-HHHHHHHHHHHHHhcCC--eEEEEecCHHHHHhhcCeEE
Q 046954 43 ISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPIS-TQNIEDVLVKLKKKHGM--TIVMVSHSIKQIQRIADVVC 114 (146)
Q Consensus 43 LSgG~~qrv~ia~al~--~~p~llllDEPt~~LD~~~-~~~~~~~l~~l~~~~g~--tvi~itH~~~~~~~~~d~v~ 114 (146)
+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++++..|. .+.+++|+-..+..+.|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566666 78889998 7899887 67788888888765454 55666777666666666543
No 186
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.11 E-value=5.5 Score=31.87 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=46.5
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCC--------HHHHHHHHHHHHHHHHhcCCeEEEEecCHH--------------
Q 046954 49 QRVALARTLA--NEPEVLLLDEPTSALD--------PISTQNIEDVLVKLKKKHGMTIVMVSHSIK-------------- 104 (146)
Q Consensus 49 qrv~ia~al~--~~p~llllDEPt~~LD--------~~~~~~~~~~l~~l~~~~g~tvi~itH~~~-------------- 104 (146)
+.+..++.++ .+|+++++|=-+ .+. ......+...|+.++++.|++||+++|--.
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3444455543 479999999433 221 123346777788888888999999988431
Q ss_pred --------HHHhhcCeEEEEE
Q 046954 105 --------QIQRIADVVCLLV 117 (146)
Q Consensus 105 --------~~~~~~d~v~~l~ 117 (146)
.+...||-|+.|.
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 3567799999996
No 187
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.81 E-value=0.7 Score=33.80 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=30.3
Q ss_pred HHHHHhcCCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 53 LARTLANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 53 ia~al~~~p~llllDEPt~~-LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
+..++..+|+++|+|||-.. .+.......++.+..+.. .|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 33445578999999997642 443333334444444443 4889999988
No 188
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.35 E-value=1.9 Score=31.62 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=39.9
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC----------HHHHHhhcCeEEEEE
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS----------IKQIQRIADVVCLLV 117 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~----------~~~~~~~~d~v~~l~ 117 (146)
+.+.+++++||-.-..+ +.+++..+.. .|+.||+..++ ...+..+||.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999988754 4555554543 59999999999 445668899997763
No 189
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.10 E-value=4.2 Score=37.94 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=48.5
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHH---HHHhcCCeEEEEecCH-------
Q 046954 49 QRVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVK---LKKKHGMTIVMVSHSI------- 103 (146)
Q Consensus 49 qrv~ia~al~--~~p~llllDEPt~~LD-~------------~~~~~~~~~l~~---l~~~~g~tvi~itH~~------- 103 (146)
+....++.++ .+|+++++|+..+-.. . ...+.+.+.+++ ++++.|++||+++|-.
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 4445555443 6899999999887652 1 123345445544 4667899999998821
Q ss_pred ---------HHHHhhcCeEEEEECCEE
Q 046954 104 ---------KQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 104 ---------~~~~~~~d~v~~l~~G~i 121 (146)
..+...+|-++.++++..
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEeccc
Confidence 246778899999975543
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=83.95 E-value=0.86 Score=34.95 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHH
Q 046954 42 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIKQ 105 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g-~tvi~itH~~~~ 105 (146)
+.++.++++..+++..+.+|+++|+.-..+..|... .....+++.+.. .| .+++++|. ++.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~-~~~~~i~V~nK-~Dl 215 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDP-SGDRTFGVLTK-IDL 215 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCT-TCTTEEEEEEC-GGG
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcc-cCCCEEEEEeC-Ccc
Confidence 356788999999999999999888874444455443 445566666643 35 46666665 443
No 191
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=83.69 E-value=6.7 Score=25.19 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=40.7
Q ss_pred hcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
..+|+.+++| .....+|..+...+.++.+++.+ .|..++++.-....
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHK-RGIKVLISGANSRV 93 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEECCCHHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence 4678999999 99999999999999999999875 59999998777543
No 192
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=83.59 E-value=2.8 Score=29.45 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH----------HHHHhhcCeEEEEE
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI----------KQIQRIADVVCLLV 117 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~----------~~~~~~~d~v~~l~ 117 (146)
+.+++++||--- +|+.. .+.+..+... |+.||+..++. ..+..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999654 66543 4566666654 89999999854 56778999996654
No 193
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.16 E-value=4.4 Score=31.97 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=42.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
+.||..+.+++.-|...+.+.++++.|+|... + ..+...++++.++.|..+|+|-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--L---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--H---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--H---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 47999999999988888888889999887443 3 34566667776666888888743
No 194
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.89 E-value=1.3 Score=30.91 Aligned_cols=44 Identities=9% Similarity=0.277 Sum_probs=30.4
Q ss_pred hcCCCEEEeeCCCCCC-CHHHHHHHHHHHHHHHHhcCCe-EEEEecC
Q 046954 58 ANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMT-IVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~L-D~~~~~~~~~~l~~l~~~~g~t-vi~itH~ 102 (146)
+.+|.++++||...-- +......+...+...... +.. +|++++.
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESS
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCC
Confidence 3678999999965432 233377788888887653 655 7777773
No 195
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.85 E-value=1.9 Score=35.19 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHHHHHHHH-hcCCC-EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 48 AQRVALARTL-ANEPE-VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 48 ~qrv~ia~al-~~~p~-llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+|++.+++++ ...|. ++|...|++|.|.. +.++.+.+..|.|.+++|| ++.
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc-CCC
Confidence 5778888866 34574 55555588775443 3455555556899999999 444
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.57 E-value=0.78 Score=31.85 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=30.8
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+|.++++||.-. +++.....+.+.+.+. ..+..+|++|++..
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 478999999766 7887777777766543 13678888888764
No 197
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=82.16 E-value=0.36 Score=35.33 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCC
Q 046954 21 EVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPE 62 (146)
Q Consensus 21 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 62 (146)
++..+-+.+|. .+.++.++.||||+.|+...+++|+..|+
T Consensus 54 ~i~~le~~lg~--~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 54 AINEMNQLSEH--ILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHHTS--CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 46667777887 37889999999999999999999999887
No 198
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=80.71 E-value=9.2 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=39.7
Q ss_pred cCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+|+.+++| .....+|..+...+.++.+++.+ .|..++++.-+..
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 95 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEK-RGTILLLSGVSDR 95 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHH-HTCEEEEESCCHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence 578999999 99999999999999999999875 5899999877654
No 199
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=80.37 E-value=4.4 Score=29.17 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=39.6
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec----------CHHHHHhhcCeEEEEE
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH----------SIKQIQRIADVVCLLV 117 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH----------~~~~~~~~~d~v~~l~ 117 (146)
+.+++++||-.- +|+... +.+..++.. |+.||+..+ -+..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~~V----~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV----EVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH----HHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHH----HHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 479999999876 665432 556666554 999999999 5667888999998764
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.54 E-value=1.5 Score=32.90 Aligned_cols=42 Identities=7% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+++++++|| ...+++.....+.+.+.+.. .+..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 456999999 77889988888888887753 2456777777654
No 201
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.71 E-value=4.9 Score=31.94 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCe--EEEEec
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT--IVMVSH 101 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~t--vi~itH 101 (146)
|+..+.+++.-|...+.+.++++.|+|. +++ ..+...++++.++.|.. +|+|-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8889999998888888788898888874 443 34555666666556777 777743
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.32 E-value=1.9 Score=31.38 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCC----------CCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHH
Q 046954 50 RVALARTLANEPEVLLLDEPTSA----------LDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIK 104 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~----------LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~ 104 (146)
+-.+..+....|.++++||.-.- -+......+..++..+. ...+..+|.+|+.++
T Consensus 100 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 33455566678999999997432 36667777877777663 112457788888664
No 203
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.30 E-value=11 Score=35.35 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=46.9
Q ss_pred HHHHHHHh--cCCCEEEeeCCCCCCCH-------------HHHHHHHHHHHHH---HHhcCCeEEEEecCH---------
Q 046954 51 VALARTLA--NEPEVLLLDEPTSALDP-------------ISTQNIEDVLVKL---KKKHGMTIVMVSHSI--------- 103 (146)
Q Consensus 51 v~ia~al~--~~p~llllDEPt~~LD~-------------~~~~~~~~~l~~l---~~~~g~tvi~itH~~--------- 103 (146)
..+++.++ .+|+++++|..++-... ...+.+.+.++++ +++.|++||+++|-.
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~ 529 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 529 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCC
Confidence 34555554 57999999998876641 1223344444444 567799999998842
Q ss_pred -------HHHHhhcCeEEEEECCE
Q 046954 104 -------KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 104 -------~~~~~~~d~v~~l~~G~ 120 (146)
..+..++|-++.+....
T Consensus 530 ~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 530 PETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp CEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CccCCCCcceeeeCCEEEEEEecc
Confidence 24678899988887654
No 204
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.14 E-value=6.4 Score=27.61 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=44.7
Q ss_pred HhcCCCEEEeeCCCC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH----------HHhhcCeEEEEE
Q 046954 57 LANEPEVLLLDEPTS----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ----------IQRIADVVCLLV 117 (146)
Q Consensus 57 l~~~p~llllDEPt~----~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~----------~~~~~d~v~~l~ 117 (146)
-..+|+++++|--+. .-+......+...|+.++++.|+++++++|-... ...+||-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 346899999995432 2256667788888899888899999999986422 345789888885
No 205
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=77.87 E-value=3.6 Score=25.41 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=37.9
Q ss_pred hcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..+|+.+++| .....+|..+...+.++.+++.+ .|..+.++.-+
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~ 85 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRR-EGAEVRIVGMN 85 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHH-TTCEEEEESHH
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 3578999999 99999999999999999999875 58888887644
No 206
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=77.61 E-value=1.5 Score=33.00 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=27.2
Q ss_pred hcCCCEEEeeCCCC-CCCHHHHHHHHH-HHHHHHHhcCCeEEEEecC-HHHHHh
Q 046954 58 ANEPEVLLLDEPTS-ALDPISTQNIED-VLVKLKKKHGMTIVMVSHS-IKQIQR 108 (146)
Q Consensus 58 ~~~p~llllDEPt~-~LD~~~~~~~~~-~l~~l~~~~g~tvi~itH~-~~~~~~ 108 (146)
+.++++|++||.-. .++...+..++. ++.....+ +..+|++|+. ++....
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~-~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLE-ELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHH-TCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHHHH
Confidence 45789999999832 445555554544 66554333 5667777764 444433
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.40 E-value=7 Score=37.16 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHHHHHh--cCCCEEEeeCCCCCCC-H------------HHHHHHHHHHHHH---HHhcCCeEEEEecCHH------
Q 046954 49 QRVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVKL---KKKHGMTIVMVSHSIK------ 104 (146)
Q Consensus 49 qrv~ia~al~--~~p~llllDEPt~~LD-~------------~~~~~~~~~l~~l---~~~~g~tvi~itH~~~------ 104 (146)
|-..+++.++ .+|+++++|.-++-.. . ...+.+.+.++++ +++.|++||+++|-..
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 4456677664 5799999998876552 1 1233455555555 5678999999988422
Q ss_pred ----------HHHhhcCeEEEEECCEE
Q 046954 105 ----------QIQRIADVVCLLVNGEI 121 (146)
Q Consensus 105 ----------~~~~~~d~v~~l~~G~i 121 (146)
.+..++|-++.|+....
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 36788999999876543
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.39 E-value=3.1 Score=30.91 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCEEEeeCCCC-------------CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 50 RVALARTLANEPEVLLLDEPTS-------------ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~-------------~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
+-.+..|....|.++++||--+ +........++..+..+....+..||.+|+.++.+
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3445566667899999999642 22233345555555443323367888999987543
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.24 E-value=11 Score=29.06 Aligned_cols=78 Identities=10% Similarity=0.189 Sum_probs=45.8
Q ss_pred HHHHcCCChhhhcCCcCCCChhHHHHHHHHHHH--h--cCCCEEEeeCCCCCCC-----H----------HHHHHHHHHH
Q 046954 25 LLSLADLDSSFLSKTGAEISVGQAQRVALARTL--A--NEPEVLLLDEPTSALD-----P----------ISTQNIEDVL 85 (146)
Q Consensus 25 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al--~--~~p~llllDEPt~~LD-----~----------~~~~~~~~~l 85 (146)
.++.+|++. .+-...+=.-++++.+.++.++ + .+|+++++|--++-.. - ...+.+.+.|
T Consensus 74 ra~~lGvd~--d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~L 151 (333)
T 3io5_A 74 YLRSMGVDP--ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLF 151 (333)
T ss_dssp HHHHTTCCG--GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHH
T ss_pred HHHHhCCCH--HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHH
Confidence 366777752 1222222234566656777776 3 4799999997766531 0 1233444444
Q ss_pred HH---HHHhcCCeEEEEecCHH
Q 046954 86 VK---LKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 86 ~~---l~~~~g~tvi~itH~~~ 104 (146)
++ ++++.|+++|+|-|-..
T Consensus 152 rkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 152 RIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHhCCEEEEECCeee
Confidence 44 56678999999999865
No 210
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=76.24 E-value=13 Score=24.07 Aligned_cols=45 Identities=11% Similarity=0.323 Sum_probs=38.9
Q ss_pred cCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+++.+++| .....+|..+...+.++.+++.+ .|..+.++.-...
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 107 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGD-VGIYVYLAGCSAQ 107 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEESCCHH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 368899999 99999999999999999999875 5889998877654
No 211
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.82 E-value=11 Score=29.91 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHh--cCCC--EEEeeCCCCCC-------CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH------
Q 046954 42 EISVGQAQRVALARTLA--NEPE--VLLLDEPTSAL-------DPISTQNIEDVLVKLKKKHGMTIVMVSHSIK------ 104 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~--~~p~--llllDEPt~~L-------D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~------ 104 (146)
.+|-.+- .+.++.+. .+|+ ++++|--..-- .......+...|+.++++.|++||+++|--.
T Consensus 290 ~~s~~~i--~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~ 367 (444)
T 3bgw_A 290 GQSVNYI--WSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQ 367 (444)
T ss_dssp SCBHHHH--HHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSS
T ss_pred CCCHHHH--HHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccC
Confidence 3555442 23344443 4899 99999543211 1223446667788888889999999999311
Q ss_pred -------------HHHhhcCeEEEEEC
Q 046954 105 -------------QIQRIADVVCLLVN 118 (146)
Q Consensus 105 -------------~~~~~~d~v~~l~~ 118 (146)
.++..||-|++|..
T Consensus 368 ~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 368 DKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp CCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred CCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 37788999999863
No 212
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=73.47 E-value=6.7 Score=30.13 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHHHHh--c-CCCEEEeeCCCCCCCHH-------HHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 42 EISVGQAQRVALARTLA--N-EPEVLLLDEPTSALDPI-------STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~--~-~p~llllDEPt~~LD~~-------~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
.+|-. +..+.++.+. . +++++++|--..--.+. ....+...|+.++++.+++||+++|--..++
T Consensus 137 ~~si~--~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e 210 (338)
T 4a1f_A 137 YVRIE--QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLE 210 (338)
T ss_dssp TCCHH--HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGG
T ss_pred CCcHH--HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCcccc
Confidence 45544 3334555554 3 68999999655433322 2567788899999999999999999755443
No 213
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=71.66 E-value=11 Score=23.80 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=39.4
Q ss_pred cCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 59 NEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 59 ~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
.+|+.+++| .....+|..+...+.++.+++. + |..++++.-+...
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~-~-g~~l~l~~~~~~v 89 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLP-E-GCELRVCNVEFQP 89 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCC-T-TCEEEEECCCHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHH-C-CCEEEEecCCHHH
Confidence 678999999 9999999999999999999985 5 8899988777543
No 214
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=70.99 E-value=19 Score=27.61 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=32.7
Q ss_pred hhHHHHHH-HHHHHhcCCCEEEeeCCCCCCCH-----------HHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 45 VGQAQRVA-LARTLANEPEVLLLDEPTSALDP-----------ISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 45 gG~~qrv~-ia~al~~~p~llllDEPt~~LD~-----------~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
.+..+.+. +...+...+ ++++||-.+=-.. ...++++..|..+.++.|+++|++++-
T Consensus 167 ~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 167 TDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CCHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cCHHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 33444443 444555444 9999997653221 122344444544555669999998873
No 215
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.76 E-value=4.6 Score=27.87 Aligned_cols=52 Identities=17% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH----------HHHhhcCeEEEEE
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK----------QIQRIADVVCLLV 117 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~----------~~~~~~d~v~~l~ 117 (146)
+++++++||--. +++. +.+.+..+.++ |..|+++.++.+ ....+||.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 678999999754 5443 55566666654 899999888443 2445699997764
No 216
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.27 E-value=11 Score=28.65 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCEEEeeCC-------CCCCCHHHHHHHHHHHHHHH---H--hcCCeEEEEecCHH
Q 046954 49 QRVALARTLANEPEVLLLDEP-------TSALDPISTQNIEDVLVKLK---K--KHGMTIVMVSHSIK 104 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDEP-------t~~LD~~~~~~~~~~l~~l~---~--~~g~tvi~itH~~~ 104 (146)
.+..+..+-...|.+|++||. ..+.+....+.+.+++..+. . ..+..||.+|+..+
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 344555666678999999998 33334444444444444442 1 12345677788753
No 217
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=69.13 E-value=0.063 Score=38.56 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=34.5
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh----cCCeEEEEecCHHHHHhhcCeEEEEECCEE
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK----HGMTIVMVSHSIKQIQRIADVVCLLVNGEI 121 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~----~g~tvi~itH~~~~~~~~~d~v~~l~~G~i 121 (146)
++..|+..+++|++.+.|..+...+.+.|.....+ ....+++++|+++.+.+-..+++-..+++.
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 35677778889999999888877777766654322 246788889999888777777665444543
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=68.69 E-value=5.2 Score=28.37 Aligned_cols=65 Identities=11% Similarity=-0.005 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHhhcC
Q 046954 44 SVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMV-SHSIKQIQRIAD 111 (146)
Q Consensus 44 SgG~~qrv~ia~al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~i-tH~~~~~~~~~d 111 (146)
+.|.-.+. ....+.+.+++++||.-. ++|........+.+.....+ -.+++++ |.+.+...++.+
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcC
Confidence 44554444 334688999999999976 57776664444444433221 2233333 455555555544
No 219
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=68.63 E-value=8.7 Score=25.09 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=43.3
Q ss_pred CCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 41 AEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
+.-..|-.. +.+|+-..+ .+|+-|+-+..=|+..+..+.+ |.+..++.|..|.++|.+-..-.+
T Consensus 37 g~~~yG~~e---V~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~q 102 (124)
T 1x52_A 37 DRAFYGLKQ---VEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQ 102 (124)
T ss_dssp GGEEESHHH---HHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHH
T ss_pred CcEEECHHH---HHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHH
Confidence 345666653 466666665 4666666655558888889999 555556679999999877555444
No 220
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=67.91 E-value=20 Score=26.01 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHhcCCCEEEeeCCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh-cCeE
Q 046954 53 LARTLANEPEVLLLDEPTSA-------LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVV 113 (146)
Q Consensus 53 ia~al~~~p~llllDEPt~~-------LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~-~d~v 113 (146)
+.+++....+++.|-|+... ++......+...+++++++.|..+|+ -.+.+.+..+ +|-|
T Consensus 49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liI-nd~~~lA~~~gAdGV 116 (243)
T 3o63_A 49 AEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAV-NDRADIARAAGADVL 116 (243)
T ss_dssp HHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEE-ESCHHHHHHHTCSEE
T ss_pred HHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEE-eCHHHHHHHhCCCEE
Confidence 44567788999999999865 88888888888888888776655444 4445666554 3443
No 221
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=67.72 E-value=15 Score=28.09 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEeeC-CCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEEecCH
Q 046954 49 QRVALARTLANEPEVLLLDE-PTSALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSI 103 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDE-Pt~~LD~~~~~~~~~~l~~l~-~~~g~tvi~itH~~ 103 (146)
=-+++..+|+..|+++++=| |++ .+.+.+.+++.. +.++.+||+++--.
T Consensus 174 G~lAl~a~lA~ga~~iliPE~~~~------~~~i~~~i~~~~~~gk~~~iIvvaEG~ 224 (319)
T 1zxx_A 174 GDIAMRVGVACGADAIVIPERPYD------VEEIANRLKQAQESGKDHGLVVVAEGV 224 (319)
T ss_dssp CHHHHHHHHHTTCSEEECTTSCCC------HHHHHHHHHHHHHTTCCCEEEEEETTT
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCC------HHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 35788999999999999954 443 346667777654 33567888887643
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=67.22 E-value=5.3 Score=31.80 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCEEEeeCCC-CC--CCHHHHHHHHHHHHHH
Q 046954 51 VALARTLANEPEVLLLDEPT-SA--LDPISTQNIEDVLVKL 88 (146)
Q Consensus 51 v~ia~al~~~p~llllDEPt-~~--LD~~~~~~~~~~l~~l 88 (146)
-+++.+...+++++|+|+|- .+ .|+....++..+...+
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 34556666799999999997 34 7887777777765554
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.82 E-value=0.041 Score=40.80 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.6
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCC
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt 70 (146)
..+|||||+|++.+++|+.++|++ +|++.
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred HHHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 457899999999999999999987 67653
No 224
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=66.01 E-value=6.3 Score=26.70 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=30.2
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.++.++++||. -.+++.....+.+.+.... .+..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCChh
Confidence 56889999995 4567777777777776532 3566777777653
No 225
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=65.79 E-value=16 Score=27.81 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCEEEeeC-CCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEEecC
Q 046954 49 QRVALARTLANEPEVLLLDE-PTSALDPISTQNIEDVLVKLK-KKHGMTIVMVSHS 102 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDE-Pt~~LD~~~~~~~~~~l~~l~-~~~g~tvi~itH~ 102 (146)
=-+++..+|+..|+++++=| |+. .+.+.+.+++.. +.++.+||+++--
T Consensus 175 G~lAl~a~lA~ga~~iliPE~~~~------~~~i~~~i~~~~~~gk~~~iIvvaEG 224 (320)
T 1pfk_A 175 GDLTLAAAIAGGCEFVVVPEVEFS------REDLVNEIKAGIAKGKKHAIVAITEH 224 (320)
T ss_dssp CHHHHHHHHHTTCSEEECTTSCCC------HHHHHHHHHHHHHTTCSCEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCC------HHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 35788999999999999954 543 246666766654 3356788888764
No 226
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=65.01 E-value=9.7 Score=24.37 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=37.7
Q ss_pred CCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+++.+++| ...+.+|..+...+.++.+++.+ .|..++++.-...
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 91 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLR-RGIVFAMARVKQD 91 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHT-TTEEEEEECCSSH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence 57899999 99999999999999999999865 5888888876643
No 227
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=64.60 E-value=21 Score=21.76 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=40.1
Q ss_pred HHHHHhcC-CCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 53 LARTLANE-PEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 53 ia~al~~~-p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+..++..+ ++.+++| .....+|......+..+.+++.+ .|..+.++.-...
T Consensus 34 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 86 (116)
T 1th8_B 34 VTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKN-VGGQMVVCAVSPA 86 (116)
T ss_dssp HHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHH-TTCCEEEESCCHH
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHH-hCCeEEEEeCCHH
Confidence 33444444 7889999 88999999999999999999865 5888888776643
No 228
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=63.85 E-value=20 Score=21.84 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=22.9
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
--.+|+++|+|=-..+.|- ..+.+.+++ ..+..+|++|.
T Consensus 43 ~~~~~dlii~D~~~p~~~g---~~~~~~lr~---~~~~~ii~~t~ 81 (120)
T 3f6p_A 43 EELQPDLILLDIMLPNKDG---VEVCREVRK---KYDMPIIMLTA 81 (120)
T ss_dssp HTTCCSEEEEETTSTTTHH---HHHHHHHHT---TCCSCEEEEEE
T ss_pred hhCCCCEEEEeCCCCCCCH---HHHHHHHHh---cCCCCEEEEEC
Confidence 3568999999977666543 233344433 33555555554
No 229
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=63.80 E-value=12 Score=31.19 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 56 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 56 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
.-..++.++++| |+.|+++.....+ ..+. ..+..+|++.|.++.
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~----~~~~-~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAW----TVAE-RLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHH----HHHH-HTTCCEEEEEECGGG
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHH----HHHH-HccCCEEEEecCCch
Confidence 346788899999 9999998877332 2232 348899999999875
No 230
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=62.51 E-value=5.7 Score=34.06 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCC------HH----HHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 49 QRVALARTLANEPEVLLLDEPTSALD------PI----STQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDEPt~~LD------~~----~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
-+..+..+....|.++++||+-+.+. .. ....+...+..+....+..+|.+||+++.+
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 34456666778899999999955442 12 223333333332223357888899987544
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=62.28 E-value=0.039 Score=40.20 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.3
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEeeCCCC
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLDEPTS 71 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~ 71 (146)
...|||||+|++.+++|+.++|++ +|++..
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred HHHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 457899999999999999999987 677654
No 232
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=59.12 E-value=22 Score=22.91 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
++.++++||.- .+++..+..+.+.+.+.. ..+..+|++|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAE-RCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHT-TTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCC-CCCEEEEEecC
Confidence 46799999965 678888888888877642 23556666665
No 233
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=58.72 E-value=28 Score=24.46 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCC-----------CHHHHHHHHHHHHHHHH---hcCCeEEEEecCHH
Q 046954 51 VALARTLANEPEVLLLDEPTSAL-----------DPISTQNIEDVLVKLKK---KHGMTIVMVSHSIK 104 (146)
Q Consensus 51 v~ia~al~~~p~llllDEPt~~L-----------D~~~~~~~~~~l~~l~~---~~g~tvi~itH~~~ 104 (146)
-.+..+....|.++++||.-.-. +......+..++..+.. ..+..+|.+|....
T Consensus 89 ~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 89 SLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 34555556679999999986532 33344455555555432 12456677777654
No 234
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=58.02 E-value=33 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=30.6
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~-g~tvi~itH 101 (146)
..+|+++|+..+.+.++......+..++..+.... ..++|+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 45789999999988888876666655554443211 258888888
No 235
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=57.61 E-value=33 Score=21.65 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=39.2
Q ss_pred HHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 56 TLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 56 al~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
++..+++.+++| .....+|......+..+.+++.+ .|..+.++.-..
T Consensus 47 ~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~-~g~~l~l~~~~~ 94 (125)
T 2ka5_A 47 FLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISS-SGGFFALVSPNE 94 (125)
T ss_dssp TTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHH-HTCEEEEECCCH
T ss_pred HhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 344568899999 99999999999999999999865 488888886554
No 236
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=57.23 E-value=9.6 Score=30.67 Aligned_cols=54 Identities=13% Similarity=0.290 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCEEEeeCCC----------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 52 ALARTLANEPEVLLLDEPT----------SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 52 ~ia~al~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
.+..|--..|.+|++||-- +.+.......++..+..+....+..||.+|+..+.
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 4555666788999999961 22223444555555554433335567778887643
No 237
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=56.16 E-value=29 Score=21.98 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=29.6
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
+.-+.-+++|-=.+.|++.....+.++...+....+..|.++.|
T Consensus 2 i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Gh 45 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGH 45 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 34556677777778888888777777766665433556777777
No 238
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=56.13 E-value=11 Score=28.13 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 55 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 55 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..+..+.+++++||+...+.......+.+.+.+.. .+..+|+++.+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~--~~~~~il~~~~ 116 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH--DDLLLIVRGNK 116 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB--TTEEEEEEESC
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 34567789999999977677777777777766542 25566666654
No 239
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=56.07 E-value=35 Score=24.93 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=45.5
Q ss_pred HHHHHhcCCCEEEeeCCCC-CCCHH---------HHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEE
Q 046954 53 LARTLANEPEVLLLDEPTS-ALDPI---------STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEI 121 (146)
Q Consensus 53 ia~al~~~p~llllDEPt~-~LD~~---------~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i 121 (146)
+..|-..+++++++=|-+. |-.+. ......+.|.+++++.|..+++=+.....-.++.+..+++. +|++
T Consensus 46 i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i 125 (283)
T 3hkx_A 46 AARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEV 125 (283)
T ss_dssp HHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECCBCSSCTTTCCBEEEEECTTSCE
T ss_pred HHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEEEEEcCCCCEEEEEEEEcCCCcE
Confidence 3445557899999988543 33332 12356778888888777776655432211024667888887 8988
Q ss_pred EEee
Q 046954 122 VEVL 125 (146)
Q Consensus 122 ~~~g 125 (146)
+...
T Consensus 126 ~~~y 129 (283)
T 3hkx_A 126 LASY 129 (283)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 240
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=55.35 E-value=11 Score=27.66 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=34.1
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 40 GAEISVGQAQRVALARTLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
++...+.+..++.+.+.++...-+=.+| |-+. + ..+.+.+.+.+++.|..||++.||.
T Consensus 91 GG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~--~----~~~~~~l~~~a~~~~~kiI~S~Hdf 149 (258)
T 4h3d_A 91 GGEKLISRDYYTTLNKEISNTGLVDLIDVELFM--G----DEVIDEVVNFAHKKEVKVIISNHDF 149 (258)
T ss_dssp TCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGG--C----HHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhc--c----HHHHHHHHHHHHhCCCEEEEEEecC
Confidence 5567777778888887776543222334 3221 2 2333344444445688999999974
No 241
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=54.66 E-value=15 Score=27.15 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCEEEeeCCCCCCC-HHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllDEPt~~LD-~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+++++++||.-. +. ......+...+.+.. .+..+|++|+...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 688999999854 44 666777777776653 3678888888765
No 242
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=53.77 E-value=40 Score=32.24 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHh--cCCCEEEeeCCCCCC----------------CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 52 ALARTLA--NEPEVLLLDEPTSAL----------------DPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 52 ~ia~al~--~~p~llllDEPt~~L----------------D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
..++.+. .+|+++++|+-.+-- -.....++...|+.++++.+++||+++|-..
T Consensus 800 ~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 800 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 4455554 579999999933221 1223345566788888888999999999643
No 243
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=53.35 E-value=7 Score=29.31 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=29.9
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.++.++++||.- .++......+.+.+.+. ..+..+|++|++..
T Consensus 118 ~~~~vliiDe~~-~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVH-MLSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGG-GSCHHHHHHHHHHHHSC--CSSEEEEEEESCGG
T ss_pred CCeEEEEEECcc-hhcHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 356899999964 46777777777776543 12567788888764
No 244
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=53.02 E-value=21 Score=27.26 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
.++++++|-|..|++....+. +. .+..++++|.++....+
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~-------l~--~~g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKM-------VQ--AYPRILYISCNPETLCK 334 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHH-------HT--TSSEEEEEESCHHHHHH
T ss_pred CCCEEEECcCccccHHHHHHH-------Hh--CCCEEEEEECCHHHHHH
Confidence 579999999999988643332 22 36789999999876543
No 245
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=52.61 E-value=32 Score=24.55 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 48 AQRVALARTLA---NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 48 ~qrv~ia~al~---~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+|.++..||. .+-++++.|+-. ++..-.+.+.++|+.+.-..+..+++|+.|-+
T Consensus 105 ~rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~ 162 (210)
T 3v2d_F 105 VRKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNEL 162 (210)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChh
Confidence 35678888885 455799999864 56667788888888873211356777776533
No 246
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=51.63 E-value=1.1 Score=33.60 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCCh
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISV 45 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSg 45 (146)
..++.++++.++|+.+..++++..||+
T Consensus 268 ~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 268 ECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp SCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456889999999964577888888885
No 247
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=51.07 E-value=33 Score=20.78 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=25.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|-...+.|. ..+.+.+++.....+..||++|-.
T Consensus 45 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HSCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEECC
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEECC
Confidence 478999999987777664 334444443210234566666654
No 248
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=50.33 E-value=37 Score=20.09 Aligned_cols=38 Identities=24% Similarity=0.519 Sum_probs=23.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++++|--..+.|.. .+.+.+++ .....+|++|.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~---~~~~~ii~~s~ 80 (120)
T 2a9o_A 43 AEQPDIIILDLMLPEIDGL---EVAKTIRK---TSSVPILMLSA 80 (120)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHH---HCCCCEEEEES
T ss_pred hCCCCEEEEeccCCCCCHH---HHHHHHHh---CCCCCEEEEec
Confidence 3589999999877666642 34444544 22455555543
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.05 E-value=19 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHhcCC-CEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 52 ALARTLANEP-EVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 52 ~ia~al~~~p-~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
.+..++...| .++++||. ..+++.....+.+.+.+
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 4556666555 79999998 56788888888888765
No 250
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=49.63 E-value=50 Score=21.30 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=22.9
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|. ..+.+.+++. ....+|++|-
T Consensus 69 ~~~~dlvilD~~l~~~~g---~~l~~~lr~~---~~~~ii~~s~ 106 (164)
T 3t8y_A 69 ELKPDVITMDIEMPNLNG---IEALKLIMKK---APTRVIMVSS 106 (164)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHH---SCCEEEEEES
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhc---CCceEEEEec
Confidence 458999999977766664 3344444442 2355555553
No 251
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=49.26 E-value=32 Score=24.25 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=38.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH----------HHHHhhcCeEEEE
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI----------KQIQRIADVVCLL 116 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~----------~~~~~~~d~v~~l 116 (146)
..+.+++++||---= +. +.+.+..+. +.|+.||+...+. ..+..+||+|.-|
T Consensus 89 ~~~~DvIlIDEaQFf--k~----~ve~~~~L~-~~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl 150 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF--PD----IVEFCEAMA-NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 150 (195)
T ss_dssp HHTCSEEEESSGGGC--TT----HHHHHHHHH-HTTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred ccCCCEEEEEchhhh--HH----HHHHHHHHH-HCCCeEEEEecccccccccchhHHHHHHhcCeEEEe
Confidence 567899999998765 22 444556666 4599999999884 3455789998766
No 252
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=48.84 E-value=30 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~ 120 (146)
..+.+.++..+ +.|..+|.+|... ..+.++||.++.+..+.
T Consensus 93 ~~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAK-SLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHH-HCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 45666666654 4688888888863 56788999988876554
No 253
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=48.37 E-value=47 Score=20.69 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=25.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|-...+.|- ..+.+.+++.. .+..||++|..
T Consensus 47 ~~~~dlvllD~~lp~~~g---~~l~~~l~~~~--~~~~ii~ls~~ 86 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDG---IELVDNILKLY--PDCSVIFMSGY 86 (141)
T ss_dssp TSCCSEEEEESCCSSSCH---HHHHHHHHHHC--TTCEEEEECCS
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CCCcEEEEeCC
Confidence 357999999987777664 34455555431 25666766654
No 254
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.31 E-value=42 Score=26.65 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCC----------CCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 49 QRVALARTLANEPEVLLLDEPTSA----------LDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDEPt~~----------LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
-|-.+..|-...|.++++||--+- -|......+..+|..+- ...+..||.+|+.++.+ |. .+
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L----Dp-Al 337 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL----DP-AL 337 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS----CT-TT
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh----CH-HH
Confidence 455666777789999999997542 24445555666666652 12246789999987644 32 23
Q ss_pred EECCEE
Q 046954 116 LVNGEI 121 (146)
Q Consensus 116 l~~G~i 121 (146)
++.|++
T Consensus 338 lRpGRf 343 (437)
T 4b4t_L 338 LRPGRL 343 (437)
T ss_dssp TSTTSE
T ss_pred hCCCcc
Confidence 466765
No 255
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=48.18 E-value=28 Score=24.93 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHh---c--CCeEEEEecCHHHHHh
Q 046954 52 ALARTLANEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLKKK---H--GMTIVMVSHSIKQIQR 108 (146)
Q Consensus 52 ~ia~al~~~p~llllDEPt~-----~LD~~~~~~~~~~l~~l~~~---~--g~tvi~itH~~~~~~~ 108 (146)
.+..+...+|.+|++||.-. ..++.....+.+.|.++... . +..+|.+|+..+.+..
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 34445556789999999421 22333445566666654321 1 2346777887766554
No 256
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=48.11 E-value=34 Score=21.28 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=22.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|. ..+.+.+++ .....||++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~---~~~~~ii~ls~ 83 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDG---WTLCKKIRN---VTTCPIVYMTY 83 (136)
T ss_dssp HCCCSEEEEESEETTEEH---HHHHHHHHT---TCCCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHcc---CCCCCEEEEEc
Confidence 468999999977666553 233344333 22455555554
No 257
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=47.99 E-value=28 Score=23.35 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|... ..+.++||.++.+..|
T Consensus 124 ~~~~~~~~~ak-~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 124 PNVLEALKKAK-ELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHHHHHHHHHH-HCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 34555665554 4588888887754 5678899998877554
No 258
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=47.85 E-value=3.9 Score=27.11 Aligned_cols=46 Identities=9% Similarity=0.155 Sum_probs=25.9
Q ss_pred cCCCEEEeeCCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~L----D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+|.++++||--.-. +......+.+.+..+..+.+..+|.+++...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 357899999953321 0222234555555554444567777776543
No 259
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=47.76 E-value=9.4 Score=29.70 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
.|-++++||-.+-+... .+.+.+... ++.|..++++++++..+.
T Consensus 279 ~~~~~~lDE~~~l~~~~---~l~~~~~~~-R~~g~~~~~~~Qs~~ql~ 322 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLA---SLADALTKG-RKAGLRVVAGLQSTSQLD 322 (437)
T ss_dssp CCEEEEESCGGGSCBCS---SHHHHHHHC-TTTTEEEEEEESCHHHHH
T ss_pred ccEEEEEEcccccccch---hHHHHHHHH-hccCCEEEEEecCHHHHH
Confidence 34689999988755322 355566665 457999999999998765
No 260
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=47.72 E-value=43 Score=19.99 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=24.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|--..+.|.. .+.+.+++ .....+|++|..
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~---~~~~~ii~~s~~ 82 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE---RSTVGIILVTGR 82 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT---TCCCEEEEEESS
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh---cCCCCEEEEECC
Confidence 4679999999877776642 34444443 235566666544
No 261
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=47.44 E-value=48 Score=22.92 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 48 AQRVALARTLA---NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 48 ~qrv~ia~al~---~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.+|.++..||. .+-++++.|+- .++..-.+.+.++|..+. .+..+++|+.
T Consensus 73 ~rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~--~~~~~LiV~~ 125 (175)
T 2ftc_D 73 VRALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRR--WGDSVLLVDL 125 (175)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCC--CCCceEEEEC
Confidence 36778888885 45579999874 455666778888887763 2334555543
No 262
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=47.19 E-value=46 Score=20.21 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=24.6
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
--.+|+++|+|--..+.|. ..+.+.+++.....+.-||++|..
T Consensus 44 ~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 44 LAHPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHSCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEESC
T ss_pred hcCCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeCC
Confidence 3478999999977766653 334444443211124556666554
No 263
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=47.10 E-value=35 Score=23.42 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=39.1
Q ss_pred cCCCEEEeeCCCC-CCCHHH----------HHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCE
Q 046954 59 NEPEVLLLDEPTS-ALDPIS----------TQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 59 ~~p~llllDEPt~-~LD~~~----------~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~ 120 (146)
.+..+..++++.. .+++.. ...+.+.++..+ +.|..+|.+|-.. ..+.++||.++.+..+.
T Consensus 72 ~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak-~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 72 LGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAK-DIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHH-HHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred cCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHH-HCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 3555666655543 233321 355667776654 4588888888764 56788999998876654
No 264
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=46.75 E-value=64 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCCEEEeeCCCCC--------CCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 60 EPEVLLLDEPTSA--------LDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 60 ~p~llllDEPt~~--------LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
++.+|++||--.- .+......+.+.+.+. ..+..+|++|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 6889999997532 3666666666666653 225677777764
No 265
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.69 E-value=49 Score=20.35 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=28.5
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
--..|+++|+|--..+.|. ..+.+.+++.....+..||++|-..+.
T Consensus 47 ~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~~ 92 (140)
T 3grc_A 47 ARRPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANARE 92 (140)
T ss_dssp HHSCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTHHH
T ss_pred HhCCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCCCh
Confidence 3478999999987777664 334444443111235677777776543
No 266
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=46.46 E-value=19 Score=26.17 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=30.0
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.++.++++||.- .+++.....+.+.+.+.. .+..+|+++....
T Consensus 109 ~~~~vliiDe~~-~l~~~~~~~L~~~le~~~--~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFS--SNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CCCeEEEEeCCC-cCCHHHHHHHHHHHHhcC--CCCeEEEEeCCcc
Confidence 468899999964 467777777777776542 2566777776653
No 267
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.32 E-value=38 Score=26.69 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCC----------CHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHH
Q 046954 50 RVALARTLANEPEVLLLDEPTSAL----------DPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~ 105 (146)
|-.+..|-...|.++++||--+-. |....+.+.++|..+- ...+..||.+|+.++.
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 345556667789999999965433 3344555666666652 2235678889987754
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=45.82 E-value=73 Score=23.99 Aligned_cols=53 Identities=9% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCCCH----------HHHHHHHHHHHHHHH-hcCCeEEEEecCH
Q 046954 51 VALARTLANEPEVLLLDEPTSALDP----------ISTQNIEDVLVKLKK-KHGMTIVMVSHSI 103 (146)
Q Consensus 51 v~ia~al~~~p~llllDEPt~~LD~----------~~~~~~~~~l~~l~~-~~g~tvi~itH~~ 103 (146)
-.+..|-...|.+|++||--+-... .....++..+..+.. ..+..||.+|+.+
T Consensus 134 ~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 134 QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred HHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 3444555678999999997643211 112333333333211 2355667778765
No 269
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=45.50 E-value=18 Score=26.80 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCCChhHHHHHHHHHHHhcCC--------------CEEEeeCCCC-CCCHHHHHHH
Q 046954 41 AEISVGQAQRVALARTLANEP--------------EVLLLDEPTS-ALDPISTQNI 81 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p--------------~llllDEPt~-~LD~~~~~~~ 81 (146)
--+-+|+.+.-++.+||-.+. -.+++||.++ .|+......+
T Consensus 200 i~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~ 255 (289)
T 1ne7_A 200 MILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYF 255 (289)
T ss_dssp EEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhh
Confidence 345678888888888887554 3899999997 5765444433
No 270
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=45.42 E-value=11 Score=28.26 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=25.2
Q ss_pred CCCEEEeeCCCCCCCHH-HHHHHHHHHHHHHH---hcCCeEEEEecCH
Q 046954 60 EPEVLLLDEPTSALDPI-STQNIEDVLVKLKK---KHGMTIVMVSHSI 103 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~-~~~~~~~~l~~l~~---~~g~tvi~itH~~ 103 (146)
.|.++++||.-.-.+.. ....+..++..... ..+..+|++|++.
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 36699999986543221 33444444443310 2367899999886
No 271
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=45.35 E-value=46 Score=19.85 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=23.3
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|-...+.|.. .+.+.+++.......-+|++|..
T Consensus 43 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 43 ENKPDLILMDIQLPEISGL---EVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHCCSEEEEESBCSSSBHH---HHHHHHHHSTTTTTSCEEEEC--
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHcCccccCCcEEEEECC
Confidence 3579999999877776642 34444443211124456666543
No 272
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=45.26 E-value=48 Score=21.04 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=23.6
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
-..|+++|+|=-..+.|. ..+.+.|++.....+..||++|
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDG---YALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp TCCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCcCCCCEEEEE
Confidence 467999999987777664 3344444432111245566665
No 273
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=45.20 E-value=29 Score=24.02 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.+||++...+.+.+++....+ .|..+.+++
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~-~Gi~l~i~s 59 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAK-EGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 458999999999999999875 487765554
No 274
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=44.42 E-value=57 Score=20.50 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=25.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
-..|+++|+|-...+.|. ..+.+.+++.. .+.-||++|...
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~ls~~~ 89 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGG---EVFLEQVAKSY--PDIERVVISGYA 89 (154)
T ss_dssp TSCCSEEEEESSCSSSCH---HHHHHHHHHHC--TTSEEEEEECGG
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhC--CCCcEEEEecCC
Confidence 467999999988777664 24445554432 255666666543
No 275
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=44.38 E-value=48 Score=19.66 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=23.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|--..+.|- ..+.+.+++.. .+..+|++|..
T Consensus 45 ~~~~dlil~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 84 (120)
T 1tmy_A 45 ELKPDIVTMDITMPEMNG---IDAIKEIMKID--PNAKIIVCSAM 84 (120)
T ss_dssp HHCCSEEEEECSCGGGCH---HHHHHHHHHHC--TTCCEEEEECT
T ss_pred hcCCCEEEEeCCCCCCcH---HHHHHHHHhhC--CCCeEEEEeCC
Confidence 357999999987666553 34445554432 24455555543
No 276
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=44.30 E-value=62 Score=20.85 Aligned_cols=42 Identities=12% Similarity=0.333 Sum_probs=26.0
Q ss_pred cCCCEEE--eeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 59 NEPEVLL--LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 59 ~~p~lll--lDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
.++++++ +| +++ ...+...+.++.+ .+..+|++.|..+....
T Consensus 80 ~~~~~~i~v~D-~~~------~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 80 EKPDLVVNIVD-ATA------LERNLYLTLQLME-MGANLLLALNKMDLAKS 123 (165)
T ss_dssp HCCSEEEEEEE-TTC------HHHHHHHHHHHHH-TTCCEEEEEECHHHHHH
T ss_pred CCCCEEEEEec-CCc------hhHhHHHHHHHHh-cCCCEEEEEEchHhccc
Confidence 4777544 44 222 2334445555543 48899999999987643
No 277
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=43.85 E-value=51 Score=19.81 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=23.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++++|--..+.|.. .+.+.+++........+|++|.
T Consensus 47 ~~~~dlvi~D~~l~~~~g~---~l~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDGL---ELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp TCCCCEEEEESCCSSSCHH---HHHHHHHC--CCTTCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCcEEEEec
Confidence 4579999999877777642 3444444321112344555554
No 278
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=43.73 E-value=50 Score=19.68 Aligned_cols=39 Identities=5% Similarity=0.169 Sum_probs=24.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|--..+.|.. .+.+.+++. .+..+|++|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~---~~~~ii~~s~~ 83 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ---ANVALMFLTGR 83 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH---CCCEEEEEESC
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC---CCCcEEEEECC
Confidence 4689999999777776642 344444432 35566666543
No 279
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=43.38 E-value=43 Score=20.26 Aligned_cols=43 Identities=9% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 56 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 56 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.--..|+++|+|=-..+.|- ..+.+.+++.....+..||++|-
T Consensus 42 l~~~~~dlvllD~~~p~~~g---~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 42 LSEFTPDLIVLXIMMPVMDG---FTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HTTBCCSEEEECSCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred HHhcCCCEEEEeccCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 33578999999977777764 23334443321112445555553
No 280
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=43.33 E-value=54 Score=19.90 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=25.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
-.+|+++|+|-...+.|. ..+.+.+++.. .+..||++|...+
T Consensus 44 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNG---IQVLETLRKRQ--YSGIIIIVSAKND 85 (134)
T ss_dssp HHCCSEEEEETTCSSSCH---HHHHHHHHHTT--CCSEEEEEECC--
T ss_pred hcCCCEEEEecCCCCCCh---HHHHHHHHhcC--CCCeEEEEeCCCC
Confidence 368999999988777664 33444444421 2456666665443
No 281
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=42.61 E-value=8.4 Score=28.23 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCCh-hHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHH
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEISV-GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 88 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LSg-G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l 88 (146)
-+.+..++..+|.. ...--+.+.|+. -|-+ ++|.|-+.+ .+ .=|||.|+|..+-..+.++..+-
T Consensus 147 vetAiaml~dmG~~-SvKffPm~Gl~~l~E~~--avAka~a~~-g~--~lEPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 147 LETAIALLKDMGGS-SIKYFPMGGLKHRAEFE--AVAKACAAH-DF--WLEPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp HHHHHHHHHHTTCC-EEEECCCTTTTTHHHHH--HHHHHHHHT-TC--EEEEBSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-eeeEeecCCcccHHHHH--HHHHHHHHc-Cc--eECCCCCccHhhHHHHHHHHHHc
Confidence 35566788888885 344444445543 3443 444444443 34 45999999999999999987663
No 282
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=42.46 E-value=84 Score=24.57 Aligned_cols=55 Identities=13% Similarity=0.316 Sum_probs=38.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+.|+..+.+++.-|...+...++++.|+| +++.. .+...++++.++.+..+|++-
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~---~i~~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTP--SIRVS---DIRAKCRRLKQESGLGMIVID 320 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCT--TCCHH---HHHHHHHHHHTTTCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHH---HHHHHHHHHHHHcCCCEEEEc
Confidence 46888888888877777777788888865 45543 344566666655577777774
No 283
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=42.40 E-value=19 Score=24.86 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=26.5
Q ss_pred CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 61 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 61 p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..+|+| +|.++.....+.+.++++. ......|++||-
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 72 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVS-PLPINEVINTNY 72 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHC-CCCEEEEECSSS
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhc-CCCcEEEEECCC
Confidence 4577888 4566777777888887763 235677888885
No 284
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=42.36 E-value=29 Score=24.11 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|... ..+.++||.++.+..|
T Consensus 145 ~~~i~~~~~ak-~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 145 ANVIKAIAAAR-EKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp HHHHHHHHHHH-HHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred HHHHHHHHHHH-HCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 44556666654 4588888888754 5677889998887765
No 285
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=42.13 E-value=54 Score=19.55 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHhcCC-CEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 53 LARTLANEP-EVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 53 ia~al~~~p-~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+..++...| +.+++| .-...+|......+....+++.+ .|..+.++.-...
T Consensus 35 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 87 (110)
T 1sbo_A 35 LRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKI-NGKEFILSSLKES 87 (110)
T ss_dssp HHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHH-TTCEEEEESCCHH
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 334444445 789999 89999999999999999999865 5888888766543
No 286
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=42.12 E-value=16 Score=23.84 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=29.1
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 56 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 56 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.|..+.+++++.+|...+.......+.+.+.... .-|++++.|
T Consensus 72 slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~---~~~~lvi~~ 114 (140)
T 1jql_B 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH---DDLLLIVRG 114 (140)
T ss_dssp CTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC---SSCCEEEEC
T ss_pred CCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC---CCEEEEEEe
Confidence 3467888999999988777666677777766542 234444444
No 287
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.97 E-value=57 Score=25.77 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCEEEeeCCC----------CCCCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHH
Q 046954 50 RVALARTLANEPEVLLLDEPT----------SALDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~ 105 (146)
|-.+..|-...|.++++||-- ++-|....+.+.++|..+- ...|..||.+|+.++.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 334556667889999999962 3345555555666665552 2235678889987653
No 288
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.75 E-value=17 Score=26.42 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+++++++||.- .++......+.+.+.+.. .+..+|++|++..
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYS--NSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccC--CCceEEEEeCChh
Confidence 48899999953 456666666777766542 3567788887754
No 289
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=41.74 E-value=37 Score=21.22 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.|+++|+|--..+.|- ..+.+.+++ .....+++++
T Consensus 60 ~~dlvilD~~l~~~~g---~~~~~~lr~---~~~~~iiil~ 94 (145)
T 3kyj_B 60 NVDLILLDIEMPVMDG---MEFLRHAKL---KTRAKICMLS 94 (145)
T ss_dssp TCCEEEECTTSCCCTT---CHHHHHHHH---HCCCEEC-CB
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHh---cCCCCeEEEE
Confidence 7999999976666553 233344443 2245555555
No 290
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=41.71 E-value=36 Score=25.82 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEec
Q 046954 50 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-HGMTIVMVSH 101 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~-~g~tvi~itH 101 (146)
-++++.+|+..|+++++=|- ..|. ..+.+.+++..++ ++.++|+++-
T Consensus 175 ~lA~~a~la~ga~~iliPE~--~~~~---~~~~~~i~~~~~~g~~~~iivvaE 222 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPEA--DYDM---HEIIARLKRGHERGKKHSIIIVAE 222 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTTB--CCCH---HHHHHHHHHHHTTTCCCEEEEEET
T ss_pred HHHHHHHhccCCCEEEecCC--CCCH---HHHHHHHHHHHHcCCCceEEEEEC
Confidence 57889999999999998653 2333 4566666665433 3567887764
No 291
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=41.71 E-value=8.8 Score=28.46 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCChhhhcCCcCCCC-hhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 19 ENEVYKLLSLADLDSSFLSKTGAEIS-VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~~~LS-gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
-+.+..++..+|.. ...--+.+.|+ --|-+-| |.|-+.+ .+ .=|||.|+|..+-..+.++..+
T Consensus 170 vetAiaml~dmG~~-SvKffPM~Gl~~leEl~av--AkAca~~-g~--~lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 170 IKTAIALVRDMGGN-SLKYFPMKGLAHEEEYRAV--AKACAEE-GF--ALEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp HHHHHHHHHHHTCC-EEEECCCTTTTTHHHHHHH--HHHHHHH-TC--EEEEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-eeeEeecCCcccHHHHHHH--HHHHHHc-Cc--eECCCCCccHhHHHHHHHHHHH
Confidence 35566778888875 34444444553 3444444 4444432 33 4599999999999999988765
No 292
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=41.69 E-value=60 Score=19.98 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=24.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|-. .+.+.+++........||++|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 45 ATPPDLVLLDIMMEPMDGW---ETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEESS
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHcCcccCCCCEEEEECC
Confidence 4679999999877776642 34444443211124556666543
No 293
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=41.60 E-value=76 Score=21.15 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=14.4
Q ss_pred hcCCCEEEeeCCCCCCCH
Q 046954 58 ANEPEVLLLDEPTSALDP 75 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~ 75 (146)
-..|+++|+|=-..+.|.
T Consensus 56 ~~~~dlvi~D~~~p~~~g 73 (205)
T 1s8n_A 56 LHKPDLVIMDVKMPRRDG 73 (205)
T ss_dssp HHCCSEEEEESSCSSSCH
T ss_pred hcCCCEEEEeCCCCCCCh
Confidence 468999999987777664
No 294
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.00 E-value=62 Score=19.95 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=24.6
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
--..|+++|+|=-..+.|- ..+.+.+++.......-||++|-.
T Consensus 45 ~~~~~dlvl~D~~lp~~~g---~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 45 YKNLPDALICDVLLPGIDG---YTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHSCCSEEEEESCCSSSCH---HHHHHHHHHSGGGTTCCEEEEECT
T ss_pred HhCCCCEEEEeCCCCCCCH---HHHHHHHHcCCCcCCccEEEEecC
Confidence 3478999999987777764 334444443211124445555543
No 295
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=40.44 E-value=61 Score=20.08 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=23.2
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|--..+.|. ..+.+.+++.....+.-||++|..
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 58999999987776654 234444443101124555555543
No 296
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=40.44 E-value=51 Score=19.47 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=21.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++++|--..+.|. ..+.+.+++ .....+|++|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~---~~~~~ii~~s~ 80 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDG---IEFIRDLRQ---WSAVPVIVLSA 80 (121)
T ss_dssp HHCCSEEEEESEETTEEH---HHHHHHHHT---TCCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHh---CCCCcEEEEEC
Confidence 458999999976666553 233444432 22445555543
No 297
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=40.20 E-value=0.7 Score=34.72 Aligned_cols=42 Identities=10% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEECCEEEE
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 123 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~~G~i~~ 123 (146)
...+.+.++++. .|+|.+.|++..+.+++|++..+.+|+++.
T Consensus 24 ~~~l~~~l~~l~----~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~ 65 (295)
T 1ls1_A 24 EEDLKATLREIR----RALMDADVNLEVARDFVERVREEALGKQVL 65 (295)
T ss_dssp HHHHHHHHHHHH----HHHHHTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHcccccc
Confidence 345566666664 489999999999999999999988888654
No 298
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=39.83 E-value=22 Score=25.82 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHHHHhcCC--------------CEEEeeCCCC-CCCHHHH
Q 046954 41 AEISVGQAQRVALARTLANEP--------------EVLLLDEPTS-ALDPIST 78 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p--------------~llllDEPt~-~LD~~~~ 78 (146)
--+.+|+.+.-+|.++|-.+. ..+++||.++ .|+....
T Consensus 200 i~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~~~ 252 (266)
T 1fs5_A 200 MILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTL 252 (266)
T ss_dssp EEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHHHH
T ss_pred EEEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccchH
Confidence 345788888888988887542 5799999998 5765443
No 299
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.75 E-value=48 Score=26.26 Aligned_cols=68 Identities=18% Similarity=0.349 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCC----------CCCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHHHHhhcCeEEE
Q 046954 49 QRVALARTLANEPEVLLLDEPTS----------ALDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQIQRIADVVCL 115 (146)
Q Consensus 49 qrv~ia~al~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~~~~~~d~v~~ 115 (146)
-|-.+..|-...|.++++||--+ +-+......+..+|..+- ...+..||.+|+.++.+-. .+
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~-----Al 337 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDP-----AL 337 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCT-----TT
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCH-----hH
Confidence 35556667778899999999421 223344445555555542 1234678889988764422 23
Q ss_pred EECCEE
Q 046954 116 LVNGEI 121 (146)
Q Consensus 116 l~~G~i 121 (146)
++.||+
T Consensus 338 lRpGRf 343 (434)
T 4b4t_M 338 LRSGRL 343 (434)
T ss_dssp CSTTSE
T ss_pred hcCCce
Confidence 456654
No 300
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=39.46 E-value=86 Score=24.52 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
..+++++|-|.+|++.... +.+..++ -..++++|+++....+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~----~~l~~l~---p~givyvsc~p~tlar 394 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLV----KRLNREK---PGVIVYVSCNPETFAR 394 (425)
T ss_dssp TCSEEEECCCTTCSCHHHH----HHHHHHC---CSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCccchHHHHH----HHHHhcC---CCcEEEEECChHHHHh
Confidence 5799999999999986443 3344442 3478999999877654
No 301
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=39.35 E-value=63 Score=19.85 Aligned_cols=42 Identities=5% Similarity=0.168 Sum_probs=23.2
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|=-..+ ......+.+.+++.....+.-||++|..
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEESC
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeCC
Confidence 67999999965440 3344455555555111224555555543
No 302
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=38.98 E-value=65 Score=19.58 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=36.6
Q ss_pred CCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 60 EPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 60 ~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
+++-+++| .....+|......+....+++.+ .|..+.++.-..
T Consensus 41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~ 84 (117)
T 1h4x_A 41 AVTTIIWNFERLSFMDSSGVGLVLGRMRELEA-VAGRTILLNPSP 84 (117)
T ss_dssp SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHT-TTCEEEEESCCH
T ss_pred CCCEEEEECCCCcEechHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 57889999 89999999999999999999865 588888876654
No 303
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=38.75 E-value=36 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
..+.+.+.++.+..+.+|++|+|..-
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~ 111 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL 111 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 56666777765434789999999854
No 304
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=38.46 E-value=62 Score=19.44 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=23.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|--..+.|. ..+.+.+++.. .+..||++|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 84 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSG---VELLRNLGDLK--INIPSIVITGH 84 (126)
T ss_dssp GCCSEEEEEECCSTTSCH---HHHHHHHHHTT--CCCCEEEEECT
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHhcC--CCCCEEEEECC
Confidence 457999999977666664 23444444421 24555555543
No 305
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=38.13 E-value=45 Score=23.29 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 70 TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
-+|||+.....+.+++....+ .|..+.+++
T Consensus 30 v~gLdp~~a~al~~m~~aA~~-~Gi~l~v~s 59 (179)
T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAK-EGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 368999999999999988765 477754443
No 306
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=37.34 E-value=61 Score=18.77 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=23.7
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++++|-...+.|. ..+.+.+++.....+..+|++|..
T Consensus 44 ~~~dlii~d~~~~~~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HCCSEEEEECSTTCCTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 58999999987776654 234444443210024556665543
No 307
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=37.32 E-value=14 Score=27.74 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=29.4
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+++++++||.- .|...+...+.+.+.+-. .+..+|++|++++
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~--~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPP--AETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCC--TTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCC--CCeEEEEEeCChH
Confidence 356899999975 466666666666654421 2567788998875
No 308
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=37.27 E-value=14 Score=24.15 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=25.9
Q ss_pred cCCCEEEeeCCCCCCCH---HHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSALDP---ISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~---~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+|.++++||--.-.+. .....+.+.+..+....+..+|++|+...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 45679999997543321 11123344455554444677888887654
No 309
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.25 E-value=76 Score=19.86 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=24.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.. .+.-||++|..
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~ls~~ 88 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGG---IEATRHIRQWD--GAARILIFTMH 88 (153)
T ss_dssp TTCCSEEEECSCCSSSCH---HHHHHHHHHHC--TTCCEEEEESC
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhC--CCCeEEEEECC
Confidence 457999999987776663 34455555432 24455555543
No 310
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.14 E-value=76 Score=19.83 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=23.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.. ...-||++|-.
T Consensus 59 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 98 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDG---AQVAAAVRSYE--LPTRVLLISAH 98 (152)
T ss_dssp HHCCSEEEEETTCSSSCH---HHHHHHHHHTT--CSCEEEEEESC
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCeEEEEEcc
Confidence 368999999977776663 33444444321 24455555543
No 311
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=36.71 E-value=37 Score=24.43 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-HHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS-IKQ 105 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~-~~~ 105 (146)
+-..+|.|= |.++...+.+.+.+++... ...+-|++||- .+.
T Consensus 83 ~~~~ilIDt---g~~~~~~~~l~~~i~~~~~-~~I~~Ii~TH~H~DH 125 (270)
T 4eyb_A 83 GGRVLVVDT---AWTDDQTAQILNWIKQEIN-LPVALAVVTHAHQDK 125 (270)
T ss_dssp TTEEEEESC---CSSHHHHHHHHHHHHHHTC-CCEEEEEECSSSHHH
T ss_pred CCEEEEEeC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCChhh
Confidence 345777774 4577878888887776431 23455888884 443
No 312
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=36.68 E-value=45 Score=23.14 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 77 STQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 77 ~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
...++...+.++.++...+|++|||..
T Consensus 125 ~~~R~~~~l~~l~~~~~~~vlvVsHg~ 151 (213)
T 3hjg_A 125 FSQRVSRAWSQIINDINDNLLIVTHGG 151 (213)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 345556667776654457999999984
No 313
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=36.50 E-value=73 Score=19.42 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=24.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|- ..+.+.+++. ..+.-||++|..
T Consensus 47 ~~~~dlvilD~~lp~~~g---~~~~~~l~~~--~~~~~ii~ls~~ 86 (133)
T 3b2n_A 47 EYNPNVVILDIEMPGMTG---LEVLAEIRKK--HLNIKVIIVTTF 86 (133)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHT--TCSCEEEEEESC
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHHH--CCCCcEEEEecC
Confidence 358999999977666663 2344444442 124566666544
No 314
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=36.45 E-value=4.6 Score=29.39 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 69 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 69 Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
|+|+.+..+...+++.+.+...+.+.+..+..|..+.+.+.++++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999887655555567778888888888776543
No 315
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=36.35 E-value=59 Score=23.77 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=10.8
Q ss_pred hcCCCEEEeeCCCC
Q 046954 58 ANEPEVLLLDEPTS 71 (146)
Q Consensus 58 ~~~p~llllDEPt~ 71 (146)
...|.++++||--+
T Consensus 97 ~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 97 KGNMCCLFINDLDA 110 (293)
T ss_dssp TSSCCCEEEECCC-
T ss_pred cCCCeEEEEechhh
Confidence 45789999999843
No 316
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.33 E-value=57 Score=20.08 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=19.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|-...+.|. ..+.+.+++.....+.-||++|-.
T Consensus 44 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 44 HHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHCCSEEEEETTC---------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHcCcccCCCCEEEEecC
Confidence 368999999976655442 233334433211024455555544
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=36.24 E-value=0.4 Score=37.60 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=29.2
Q ss_pred hcCCcCCCChhHHHHHHHHHHHhcCCCEEE-eeCCCC
Q 046954 36 LSKTGAEISVGQAQRVALARTLANEPEVLL-LDEPTS 71 (146)
Q Consensus 36 ~~~~~~~LSgG~~qrv~ia~al~~~p~lll-lDEPt~ 71 (146)
.+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 276 ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 276 VTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred cChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 344567789999999998888888888877 888876
No 318
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=36.13 E-value=15 Score=25.76 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=25.9
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~ 90 (146)
..+|+|++-||..+|=|..-...+.+.|..++.
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~ 101 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLAI 101 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHHH
Confidence 458999999999999887777777777666653
No 319
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=35.98 E-value=23 Score=22.83 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
+..+|++||.- .|++..+..+.+.+... ..+..+|++|+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCc
Confidence 66899999985 68888888888888432 224556666654
No 320
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=35.95 E-value=65 Score=23.09 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=28.1
Q ss_pred EEEeeC--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDE--PTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDE--Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+|-||- +-++|++.....+.+.+.++.++...-+|++|
T Consensus 12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVlt 51 (254)
T 3hrx_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLT 51 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 456674 56899999999999999998765454444444
No 321
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=35.81 E-value=70 Score=19.06 Aligned_cols=39 Identities=15% Similarity=0.399 Sum_probs=23.9
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|. ..+.+.+++.. .+..+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 83 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDG---IEILKRMKVID--ENIRVIIMTA 83 (124)
T ss_dssp HHCCSEEEEESCCTTCCH---HHHHHHHHHHC--TTCEEEEEES
T ss_pred ccCCCEEEEecCCCCCCH---HHHHHHHHHhC--CCCCEEEEEc
Confidence 468999999987766664 23444444431 2455665554
No 322
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=35.73 E-value=51 Score=19.88 Aligned_cols=42 Identities=7% Similarity=0.163 Sum_probs=23.8
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|--..+.|.. .+.+.+++.....+..+|++|..
T Consensus 49 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGL---GLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp TSCCSEEEECSSSCSSCHH---HHHHHHTTCTTSTTCEEEECCSC
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHhcCccccCCCEEEEeCC
Confidence 4679999999877776642 33344333110124556666544
No 323
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=35.57 E-value=34 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcC-CCEEEeeC-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 49 QRVALARTLANE-PEVLLLDE-PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 49 qrv~ia~al~~~-p~llllDE-Pt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
=-+++..+|+.. |+++++=| |+ |.. .+.+.+++..+.++.+||+++--.
T Consensus 277 G~LAl~agLA~g~ad~ilIPE~p~---~l~---~i~~~i~~r~~~k~~~IIvVaEGa 327 (487)
T 2hig_A 277 GFIAAQAAVASAQANICLVPENPI---SEQ---EVMSLLERRFCHSRSCVIIVAEGF 327 (487)
T ss_dssp CHHHHHHHHHHTCCSEEECTTSCC---CHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred HHHHHHHHHhhCCCCEEEeCCCCC---CHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence 357899999998 99999865 43 333 566666665444577888887654
No 324
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=35.44 E-value=26 Score=28.68 Aligned_cols=42 Identities=10% Similarity=0.378 Sum_probs=33.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|-+.+. .+++...+.++.+ .|..++++.-+++.
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~-~g~~lvii~~~I~~ 254 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQ-TGKPLLIIAEDVEG 254 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHT-TTCCEEEEESCBCH
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHh-cCCCEEEEcCCccH
Confidence 579999999998663 4567788888865 59999999887654
No 325
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=35.40 E-value=1.1e+02 Score=21.04 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=22.4
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|.. .+.+.+++ ..+..||++|-
T Consensus 47 ~~~~dlvilD~~l~~~~g~---~~~~~lr~---~~~~~ii~lt~ 84 (238)
T 2gwr_A 47 ELRPDLVLLDLMLPGMNGI---DVCRVLRA---DSGVPIVMLTA 84 (238)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHT---TCCCCEEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHh---CCCCcEEEEeC
Confidence 3589999999877666642 33333333 22455555543
No 326
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.31 E-value=62 Score=19.56 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=22.3
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
..|+++|+|--..+.|. ..+.+.+++.....+..+|++|.
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEES
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEec
Confidence 57999999977766653 24444444421002344554443
No 327
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=35.27 E-value=49 Score=24.06 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=42.8
Q ss_pred HHHHhcCCCEEEeeCCCC-CCCHHH--------HHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEEEE
Q 046954 54 ARTLANEPEVLLLDEPTS-ALDPIS--------TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVE 123 (146)
Q Consensus 54 a~al~~~p~llllDEPt~-~LD~~~--------~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i~~ 123 (146)
..|-..+++++++=|-+. |-.+.. .....+.|.+++++.|..+++=+.....-.++.+..+++. +|+++.
T Consensus 47 ~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~ 126 (281)
T 3p8k_A 47 EKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLIN 126 (281)
T ss_dssp HHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEE
T ss_pred HHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEE
Confidence 334456889999988653 333221 1456777888887777776654321111124567778886 898865
Q ss_pred e
Q 046954 124 V 124 (146)
Q Consensus 124 ~ 124 (146)
.
T Consensus 127 ~ 127 (281)
T 3p8k_A 127 E 127 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 328
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=34.99 E-value=91 Score=20.10 Aligned_cols=46 Identities=7% Similarity=0.056 Sum_probs=36.4
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
+..-+.-+.+|-=.+.|++.....+.++...+....+..|.++.|-
T Consensus 25 ~~~~~~~i~F~~~sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~Ght 70 (134)
T 2aiz_P 25 LQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNT 70 (134)
T ss_dssp HTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hhcCcceEEecCCCceeCHHHHHHHHHHHHHHHHCCCceEEEEEEE
Confidence 6777888889988899999998888888777765335678888874
No 329
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=34.89 E-value=70 Score=22.34 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEecC-HHHHHhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKK--HGMTIVMVSHS-IKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~--~g~tvi~itH~-~~~~~~~~d~v~~l~~G~ 120 (146)
..+.+.++..+ + .|..+|.+|.. -+.+.++||.++.+..+.
T Consensus 120 ~~~i~~~~~ak-~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 120 REIVELTQLAH-NLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp HHHHHHHHHHH-HHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred HHHHHHHHHHH-hcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 55666766654 4 58888888865 456788999999886653
No 330
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=34.87 E-value=75 Score=19.08 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=22.5
Q ss_pred CCCEEEeeCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 60 EPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 60 ~p~llllDEPt~~-LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
.|+++|+|--..+ .|. ..+.+.+++.. .+..+|++|..
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 88 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREID--PNMPIVYISGH 88 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHC--TTCCEEEEESS
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcC--CCCCEEEEeCC
Confidence 7999999976664 553 24455555432 24555555543
No 331
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=34.84 E-value=56 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEecCHH
Q 046954 78 TQNIEDVLVKLKKK-HGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~l~~~-~g~tvi~itH~~~ 104 (146)
..++.+.+.++.++ .+.+|++|||..-
T Consensus 126 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~ 153 (207)
T 1h2e_A 126 QQRALEAVQSIVDRHEGETVLIVTHGVV 153 (207)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCHHH
Confidence 34445556666543 3689999999853
No 332
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=34.83 E-value=49 Score=22.81 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEecCHH
Q 046954 78 TQNIEDVLVKLKKK-HGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~l~~~-~g~tvi~itH~~~ 104 (146)
..++...+.++.++ .+.+|++|||..-
T Consensus 128 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~ 155 (208)
T 2a6p_A 128 NDRADSAVALALEHMSSRDVLFVSHGHF 155 (208)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCHHH
Confidence 34455666666543 3679999999854
No 333
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.75 E-value=78 Score=19.27 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=24.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.....+.-||++|..
T Consensus 52 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 52 TVKPDVVMLDLMMVGMDG---FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HTCCSEEEEETTCTTSCH---HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred hcCCCEEEEecccCCCcH---HHHHHHHHhCccccCCcEEEEeCC
Confidence 367999999987766653 234444443111124566666544
No 334
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.69 E-value=76 Score=19.10 Aligned_cols=43 Identities=26% Similarity=0.255 Sum_probs=23.9
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
--.+|+++|+|-...+.|. ..+.+.+++........|++++..
T Consensus 47 ~~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~~~~ 89 (132)
T 3lte_A 47 STFEPAIMTLDLSMPKLDG---LDVIRSLRQNKVANQPKILVVSGL 89 (132)
T ss_dssp HHTCCSEEEEESCBTTBCH---HHHHHHHHTTTCSSCCEEEEECCS
T ss_pred HhcCCCEEEEecCCCCCCH---HHHHHHHHhcCccCCCeEEEEeCC
Confidence 3478999999987777664 233333333211013455555543
No 335
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=34.68 E-value=80 Score=19.35 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=22.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|- ..+ .....+.+.+++.. .+.-||++|..
T Consensus 46 ~~~~dlvi~d~-~~~---~~g~~~~~~l~~~~--~~~pii~ls~~ 84 (142)
T 2qxy_A 46 REKIDLVFVDV-FEG---EESLNLIRRIREEF--PDTKVAVLSAY 84 (142)
T ss_dssp TSCCSEEEEEC-TTT---HHHHHHHHHHHHHC--TTCEEEEEESC
T ss_pred ccCCCEEEEeC-CCC---CcHHHHHHHHHHHC--CCCCEEEEECC
Confidence 46899999997 543 23344555555432 24556666543
No 336
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=34.61 E-value=33 Score=21.48 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
...+++.+.++++.++.+..||++|-++
T Consensus 36 ~~~ee~~~~~~~l~~~~digIIlIte~i 63 (102)
T 2i4r_A 36 TSDEEIVKAVEDVLKRDDVGVVIMKQEY 63 (102)
T ss_dssp CSHHHHHHHHHHHHHCSSEEEEEEEGGG
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 3456788888888766688999999764
No 337
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=34.54 E-value=49 Score=23.51 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHH
Q 046954 47 QAQRVALARTLA---NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--HGMTIVMVSHSIK 104 (146)
Q Consensus 47 ~~qrv~ia~al~---~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--~g~tvi~itH~~~ 104 (146)
++.+-.+.+++. .+|+++|+--+.+.+... ...+.+.+.++... .+..+|+++|-.+
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~D 150 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKED 150 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHh
Confidence 555566777763 888877766555555543 34555666655322 2678999998654
No 338
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=34.50 E-value=18 Score=28.56 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeE
Q 046954 41 AEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 113 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v 113 (146)
.+++|||+..-.. ..++.+.+.+++-=||. |=... .+..++..+.+ .|..++++++--..+.+.++++
T Consensus 2 ~~~tg~~q~~~~~-~~~l~~~~~vlv~a~TGsGKT~~---~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l 70 (459)
T 2z83_A 2 ASMTGGQQMGRGS-PNMLRKRQMTVLDLHPGSGKTRK---ILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEAL 70 (459)
T ss_dssp --------------CGGGSTTCEEEECCCTTSCTTTT---HHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHT
T ss_pred cccccHHHHHHHH-HHHHhcCCcEEEECCCCCCHHHH---HHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHh
Confidence 4678888755443 33444445555555554 43322 23344444433 3778888989988888776654
No 339
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=34.45 E-value=82 Score=19.45 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=39.6
Q ss_pred HHHh-cCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 55 RTLA-NEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 55 ~al~-~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.++. .+|+.+++| .....+|..+...+....+++.+..|..+.++.-...
T Consensus 41 ~~l~~~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~ 92 (121)
T 3t6o_A 41 AAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPY 92 (121)
T ss_dssp HTTCCSSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCCHH
T ss_pred HHHhhcCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4443 578899999 9999999999999999999885305888888876643
No 340
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=34.40 E-value=1.4e+02 Score=22.02 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 53 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 53 ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
+..|...+.+.++|+= +.|+...-+.+.+.. ++.|..+++-.|+.+++.+.
T Consensus 135 i~ea~~~GAD~VlLi~--a~L~~~~l~~l~~~a----~~lGl~~lvevh~~eEl~~A 185 (272)
T 3tsm_A 135 VYEARSWGADCILIIM--ASVDDDLAKELEDTA----FALGMDALIEVHDEAEMERA 185 (272)
T ss_dssp HHHHHHTTCSEEEEET--TTSCHHHHHHHHHHH----HHTTCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEEcc--cccCHHHHHHHHHHH----HHcCCeEEEEeCCHHHHHHH
Confidence 6667788999999974 467765544444443 34599999999999998754
No 341
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.02 E-value=81 Score=19.75 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=24.2
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|-...+.|. ..+.+.+++.. .+.-||++|..
T Consensus 46 ~~~dliild~~l~~~~g---~~~~~~l~~~~--~~~pii~ls~~ 84 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDG---LALFRKILALD--PDLPMILVTGH 84 (155)
T ss_dssp TCCSEEEEESCCSSSCH---HHHHHHHHHHC--TTSCEEEEECG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CCCCEEEEECC
Confidence 57999999987776654 34455555432 24556666543
No 342
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=33.90 E-value=1e+02 Score=24.00 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHHHHHhcCC--CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Q 046954 41 AEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 107 (146)
Q Consensus 41 ~~LSgG~~qrv~ia~al~~~p--~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~ 107 (146)
+.-..|.+. ...|+-.++ .+|+-|+-+..-|+..++.+.+++... ++.|..|.+++.+-..-.
T Consensus 290 g~a~YG~~e---V~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~~L~e~~-~~~Gg~V~ivs~~~~~G~ 354 (390)
T 3mca_B 290 RKAWYGPNH---VLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGV-KEINCPVYIFSSLHESGK 354 (390)
T ss_dssp TSEEESHHH---HHHHHHTTCBSSCEEEETTCCCSCHHHHHHHHHHHHHH-HHTTCCEEEECTTSHHHH
T ss_pred CcEEECHHH---HHHHHHcCCCeEEEEecccccCCChhHHHHHHHHHHHH-HhcCCEEEEECCCCCchh
Confidence 344566553 234444443 599999999888998888888666655 456888888887644433
No 343
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=33.78 E-value=67 Score=23.52 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=23.6
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-||-|- +.||+.....+.+.+.++.++...-+|++
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 78 (276)
T 3rrv_A 40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVI 78 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 45566664 77888888888888877754434333333
No 344
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=33.77 E-value=1.1e+02 Score=20.68 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=25.3
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
-..|+++|+|--..+.|. ..+.+.+++. .+..||++|...+
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~~~~~l~~~---~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 46 RAGADIVLLDLMLPGMSG---TDVCKQLRAR---SSVPVIMVTARDS 86 (230)
T ss_dssp HHCCSEEEEESSCSSSCH---HHHHHHHHHH---CSCSEEEEECCHH
T ss_pred ccCCCEEEEECCCCCCCH---HHHHHHHHcC---CCCCEEEEeCCCc
Confidence 358999999987766664 2344455442 3555666665443
No 345
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=33.76 E-value=49 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHh----cCCeEEEEecCH
Q 046954 78 TQNIEDVLVKLKKK----HGMTIVMVSHSI 103 (146)
Q Consensus 78 ~~~~~~~l~~l~~~----~g~tvi~itH~~ 103 (146)
..++...+.++.++ .+.+|++|||-.
T Consensus 155 ~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 184 (237)
T 3r7a_A 155 STRIKAEIDKISEEAAKDGGGNVLVVVHGL 184 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCHH
Confidence 34555666666442 478999999974
No 346
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=33.61 E-value=84 Score=19.31 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=22.4
Q ss_pred cCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|--.. +.|. ..+.+.+++. .+.-||++|..
T Consensus 49 ~~~dlvi~D~~l~~~~~g---~~~~~~l~~~---~~~~ii~ls~~ 87 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDG---VQTALAIQQI---SELPVVFLTAH 87 (140)
T ss_dssp CCCSEEEEESSCSSSCCH---HHHHHHHHHH---CCCCEEEEESS
T ss_pred CCCCEEEEeccCCCCCCH---HHHHHHHHhC---CCCCEEEEECC
Confidence 5799999997654 4553 3344444442 24555555544
No 347
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=33.48 E-value=83 Score=19.21 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=24.8
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH--HhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~--~~~g~tvi~itH~ 102 (146)
..|+++|+|=-..+.|. ..+.+.+++.. ......+|++|..
T Consensus 59 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 59 RWPSIICIDINMPGING---WELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp CCCSEEEEESSCSSSCH---HHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 67999999987777664 34445555421 1224566666543
No 348
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=33.43 E-value=76 Score=23.36 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCEEEeeCCCCCCC----------HHHHHHHHHHHHHHHH-hcCCeEEEEecCHH
Q 046954 52 ALARTLANEPEVLLLDEPTSALD----------PISTQNIEDVLVKLKK-KHGMTIVMVSHSIK 104 (146)
Q Consensus 52 ~ia~al~~~p~llllDEPt~~LD----------~~~~~~~~~~l~~l~~-~~g~tvi~itH~~~ 104 (146)
.+..+-..+|.+|++||--+-.. ......++..+..+.. ..+..||.+|+.++
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 44555667899999999753222 1223344444443321 22455666777643
No 349
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=33.40 E-value=73 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=26.9
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
++-||-| -+.|+......+.+.+.++..+... +|++|-
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg 77 (280)
T 2f6q_A 38 KIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTG 77 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeC
Confidence 3556765 5889988888888888888655456 555553
No 350
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=33.33 E-value=87 Score=22.33 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcC
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
++-||-| -+.|++.....+.+.+.++..+..
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~ 44 (250)
T 2a7k_A 12 VITLDHPNKHNPFSRTLETSVKDALARANADDS 44 (250)
T ss_dssp EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3456655 477777777777777777754333
No 351
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=33.19 E-value=52 Score=23.15 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=22.3
Q ss_pred HHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 56 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 56 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
.--..|+++|+|=-..+. .-..+.+.|++ ..+..||++|-
T Consensus 77 ~~~~~~DlvllD~~lp~~---~G~~l~~~lr~---~~~~~iI~lt~ 116 (249)
T 3q9s_A 77 AREDHPDLILLDLGLPDF---DGGDVVQRLRK---NSALPIIVLTA 116 (249)
T ss_dssp HHHSCCSEEEEECCSCHH---HHHHHHHHHHT---TCCCCEEEEES
T ss_pred HhcCCCCEEEEcCCCCCC---CHHHHHHHHHc---CCCCCEEEEEC
Confidence 345689999999765442 33344444443 22445555553
No 352
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=33.16 E-value=78 Score=22.88 Aligned_cols=37 Identities=14% Similarity=0.352 Sum_probs=23.5
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-|+-| -+.|+......+.+.+.++..+...-+|++
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 59 (265)
T 3rsi_A 21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAIL 59 (265)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 4556655 377888888888888877754434334433
No 353
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=33.15 E-value=1.4e+02 Score=21.99 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCEEEeeCCCCC-------CCHHHHHHHHHHHHHHHH----hcCCeEEEEecCH
Q 046954 51 VALARTLANEPEVLLLDEPTSA-------LDPISTQNIEDVLVKLKK----KHGMTIVMVSHSI 103 (146)
Q Consensus 51 v~ia~al~~~p~llllDEPt~~-------LD~~~~~~~~~~l~~l~~----~~g~tvi~itH~~ 103 (146)
-.+..+-...|.+|++||.-+- ......+.+.+++..+-. ..+..||.+|..+
T Consensus 96 ~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 96 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp HHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 3444555678999999997532 122233333344444421 1245666677754
No 354
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=33.04 E-value=92 Score=20.62 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.8
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 64 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 64 lllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.+.|+ ..-|++..+..|.+.+.++.++.|.-|.++|
T Consensus 16 ~V~D~-A~vLs~~~~~~L~~~l~~l~~~tg~qi~Vvt 51 (148)
T 2kpt_A 16 NVTDY-TGQISSSDITNIQAAIDDVKASEQKVIFVVF 51 (148)
T ss_dssp SEEES-SSCSCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred eeeeC-CCCCCHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 35564 6779999999999999999877776665553
No 355
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=33.02 E-value=80 Score=21.55 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=32.5
Q ss_pred hcCCCEEEeeCCCCCCCH-------------------HHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEPTSALDP-------------------ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~-------------------~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|=|..-=-+ ..++.+.+.++++.+ .|..|+++.-.++.
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~-~g~nVVl~~k~I~d 90 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQ-LKPDVVITEKGISD 90 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHT-TCCSEEEESSCBCH
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhh-cCCcEEEECCcccH
Confidence 479999999977653222 134456777777764 59999999877664
No 356
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=33.01 E-value=91 Score=19.50 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=25.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.. .+..||++|-.
T Consensus 56 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 95 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDG---PTLLARIHQQY--PSTTRILLTGD 95 (153)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHHC--TTSEEEEECCC
T ss_pred cCCCCEEEEeCCCCcCcH---HHHHHHHHhHC--CCCeEEEEECC
Confidence 468999999987776664 34444554421 25666666654
No 357
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=32.97 E-value=71 Score=21.15 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|.+. ..+.++||.++.+..+
T Consensus 110 ~~~~~~~~~ak-~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 110 SEITALIPVLK-RLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp HHHHHHHHHHH-TTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred HHHHHHHHHHH-HCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 34556666554 4588777777754 5788899999888654
No 358
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=32.89 E-value=43 Score=27.30 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=34.2
Q ss_pred hcCCCEEEeeCC-------------CCCCCH------HHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEP-------------TSALDP------ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEP-------------t~~LD~------~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|-| .+..+. ..++.+...+.++.+ .|.-++++.-+++.
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~~ 296 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKK-SGANVVLCQKGIDD 296 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEESSCBCH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEECCCccH
Confidence 689999999999 333333 234456778888875 59999999877664
No 359
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=32.88 E-value=86 Score=19.17 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=23.5
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|--..+.|. ..+.+.+++.....+.-+|++|..
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 57999999977766653 234444443211124556666544
No 360
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.85 E-value=84 Score=19.06 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=22.9
Q ss_pred cC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NE-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~-p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
.. |+++|+|--..+.|. ..+.+.+++.. ..+.-||++|..
T Consensus 50 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~~ii~~s~~ 90 (136)
T 3hdv_A 50 QKRIGLMITDLRMQPESG---LDLIRTIRASE-RAALSIIVVSGD 90 (136)
T ss_dssp CTTEEEEEECSCCSSSCH---HHHHHHHHTST-TTTCEEEEEESS
T ss_pred CCCCcEEEEeccCCCCCH---HHHHHHHHhcC-CCCCCEEEEeCC
Confidence 44 899999987777664 23334443321 124556666644
No 361
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.83 E-value=85 Score=19.14 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.......-||++|..
T Consensus 49 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 49 KGFSGVVLLDIMMPGMDG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp TCCCEEEEEESCCSSSCH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 467999999977766553 234444443101124556666654
No 362
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=32.67 E-value=35 Score=27.04 Aligned_cols=47 Identities=34% Similarity=0.324 Sum_probs=31.1
Q ss_pred HHHHHHHHh-----cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 50 RVALARTLA-----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 50 rv~ia~al~-----~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-++++.+|+ ..|+++++=|--- |. +.+.+.+++..++.+.+||+++-
T Consensus 196 ~lAl~aglA~~~~~~gad~ilIPE~~f--~~---~~~~~~i~~~~~~~~~~iIvVaE 247 (419)
T 3hno_A 196 WIAAAGGLASSPEREIPVVILFPEISF--DK---QKFLAKVDSCVKKFGYCSVVVSE 247 (419)
T ss_dssp HHHHGGGGGCCSSSCCCEEEECTTSCC--CH---HHHHHHHHHHHHHHSCEEEEEET
T ss_pred HHHHHHHHhcccCCCCceEEEeCCCCC--CH---HHHHHHHHHHHHhCCCEEEEEeC
Confidence 467888888 5899888865322 33 45666666654445778887763
No 363
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=32.65 E-value=35 Score=22.77 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEEC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVN 118 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~ 118 (146)
..+.+.++..+ +.|..+|.+|... . +.++||.++.+..
T Consensus 96 ~~~~~~~~~ak-~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 96 ESVLTVAKKAK-NINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHHHH-TTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHHHH-HCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 45666776654 4688888888753 5 7789999888754
No 364
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=32.60 E-value=93 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=14.5
Q ss_pred EEeeCC--CCCCCHHHHHHHHHHHHHHHH
Q 046954 64 LLLDEP--TSALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 64 lllDEP--t~~LD~~~~~~~~~~l~~l~~ 90 (146)
+-||-| -+.|+......+.+.+.++..
T Consensus 18 itlnrp~~~Nal~~~~~~~L~~al~~~~~ 46 (258)
T 2pbp_A 18 IELARPDVLNALSRQMVAEIVAAVEAFDR 46 (258)
T ss_dssp EEECCGGGTTCCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhh
Confidence 344444 355666666666666555543
No 365
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=32.52 E-value=83 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=24.5
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-||-| -+.||......+.+.+.++.++...-+|++
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 59 (267)
T 3r9t_A 21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVL 59 (267)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 4556655 688888888888888888765434333333
No 366
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.47 E-value=77 Score=18.53 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=24.4
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|-...+.|. ..+.+.+++.. .+..+|++|..
T Consensus 43 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 82 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISG---LEVAGEIRKKK--KDAKIILLTAY 82 (116)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHHHC--TTCCEEEEESC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHccC--CCCeEEEEECC
Confidence 367999999987776664 24455555432 24455555544
No 367
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=32.38 E-value=84 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=16.1
Q ss_pred EEeeCC--CCCCCHHHHHHHHHHHHHHHH
Q 046954 64 LLLDEP--TSALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 64 lllDEP--t~~LD~~~~~~~~~~l~~l~~ 90 (146)
+-||-| -+.|++.....+.+.+.++.+
T Consensus 20 itlnrp~~~Nal~~~~~~~L~~al~~~~~ 48 (260)
T 1mj3_A 20 IQLNRPKALNALCNGLIEELNQALETFEE 48 (260)
T ss_dssp EEECCGGGTTCBCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHHh
Confidence 445544 466666666666666666544
No 368
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=32.26 E-value=82 Score=19.38 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=22.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|. ..+.+.+++.....+.-||++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANG---FEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp TCCCSEEEECTTCGGGCH---HHHHHHHHSSSTTTTCCEEEEET
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcccccCCCEEEEeC
Confidence 467999999976665543 33444444310112455666553
No 369
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.16 E-value=31 Score=27.76 Aligned_cols=58 Identities=9% Similarity=0.210 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCC----------CHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHH
Q 046954 48 AQRVALARTLANEPEVLLLDEPTSAL----------DPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 48 ~qrv~ia~al~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~ 105 (146)
.-|-.+..|-...|.++++||--+-. +......+..+|..+- ...+..||.+|+.++.
T Consensus 290 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 290 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 34556777778899999999987543 2344555666666652 1224577888887653
No 370
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=32.11 E-value=18 Score=27.08 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=29.9
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+.+++|+||+-. |.......+.+.|.+.. .+..+|++|+++.
T Consensus 82 ~~kvviIdead~-lt~~a~naLLk~LEep~--~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCER-MTQQAANAFLKALEEPP--EYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGGG-BCHHHHHHTHHHHHSCC--TTEEEEEEESCGG
T ss_pred CceEEEeccHHH-hCHHHHHHHHHHHhCCC--CCeEEEEEECChH
Confidence 347999999854 66777777777766532 2677888888875
No 371
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.97 E-value=1e+02 Score=19.76 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEE-Ee
Q 046954 22 VYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM-VS 100 (146)
Q Consensus 22 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~-it 100 (146)
+...++..|.. .+..-+.|+. ++...--.+|+++|+|==.-++|-. .+.+.|+......+.-||+ ++
T Consensus 28 l~~~L~~~G~~------~v~~a~~g~~---al~~~~~~~~DlillD~~MP~mdG~---el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 28 VKNLLRDLGFN------NTQEADDGLT---ALPMLKKGDFDFVVTDWNMPGMQGI---DLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHTTCC------CEEEESSHHH---HHHHHHHHCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHcCCc------EEEEECCHHH---HHHHHHhCCCCEEEEcCCCCCCCHH---HHHHHHHhCCCCCCCeEEEEEC
Confidence 45566666642 1223345554 2333445789999999888888853 3444444321112344544 44
Q ss_pred cC
Q 046954 101 HS 102 (146)
Q Consensus 101 H~ 102 (146)
|.
T Consensus 96 ~~ 97 (134)
T 3to5_A 96 EA 97 (134)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 372
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=31.88 E-value=76 Score=23.95 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCE
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~ 120 (146)
...+.+.++..+ +.|..+|.+|.+. +.+.+.||.++.+..|.
T Consensus 104 T~e~l~a~~~ak-~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 104 SPDIVAMTRNAG-RDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp CHHHHHHHHHHH-HTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CHHHHHHHHHHH-HCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 456667777654 4699999998764 46888999999988774
No 373
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=31.88 E-value=94 Score=19.34 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=24.5
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
--..|+++|+|--..+.|. ..+.+.+++.. .+.-||++|..
T Consensus 63 ~~~~~dlii~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~ls~~ 103 (150)
T 4e7p_A 63 EKESVDIAILDVEMPVKTG---LEVLEWIRSEK--LETKVVVVTTF 103 (150)
T ss_dssp TTSCCSEEEECSSCSSSCH---HHHHHHHHHTT--CSCEEEEEESC
T ss_pred hccCCCEEEEeCCCCCCcH---HHHHHHHHHhC--CCCeEEEEeCC
Confidence 3467999999977766653 33444444421 24556655544
No 374
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=31.61 E-value=76 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=28.3
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+|-||-|- +.||......+.+.+.++.++...-+|++|
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 62 (274)
T 3tlf_A 23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVT 62 (274)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 46778774 899999999999999998754444444443
No 375
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.61 E-value=54 Score=26.16 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCC----------CCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHHHHhhcCeEEEE
Q 046954 50 RVALARTLANEPEVLLLDEPTSA----------LDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQIQRIADVVCLL 116 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~----------LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~~~~~~d~v~~l 116 (146)
|-.+..|-...|.++++||--+- -+......+..+|..+- ...+..||.+|+.++.+-. .++
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp-----ALl 339 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP-----ALI 339 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT-----TSS
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH-----HHh
Confidence 55566666788999999996532 23445566666666552 1235678899998875432 234
Q ss_pred ECCEE
Q 046954 117 VNGEI 121 (146)
Q Consensus 117 ~~G~i 121 (146)
+-||+
T Consensus 340 RpGRf 344 (437)
T 4b4t_I 340 RPGRI 344 (437)
T ss_dssp CTTTE
T ss_pred cCCce
Confidence 66765
No 376
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=31.53 E-value=1e+02 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=15.4
Q ss_pred EEeeCC--CCCCCHHHHHHHHHHHHHHHH
Q 046954 64 LLLDEP--TSALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 64 lllDEP--t~~LD~~~~~~~~~~l~~l~~ 90 (146)
+-||-| .+.|++.....+.+.+.++.+
T Consensus 12 itlnrp~~~Nal~~~~~~~L~~al~~~~~ 40 (253)
T 1uiy_A 12 VFLNDPERRNPLSPEMALSLLQALDDLEA 40 (253)
T ss_dssp EEECCGGGTCCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHHh
Confidence 345544 366666666666666666543
No 377
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=31.50 E-value=92 Score=19.12 Aligned_cols=40 Identities=10% Similarity=0.304 Sum_probs=24.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|- ..+.+.+++. .....||++|..
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~--~~~~~ii~ls~~ 85 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSG---EDVLDWINQN--DIPTSVIIATAH 85 (137)
T ss_dssp HHCCSEEEECSBCSSSBH---HHHHHHHHHT--TCCCEEEEEESS
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhc--CCCCCEEEEEec
Confidence 458999999987766664 2344444432 124556666643
No 378
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=31.36 E-value=43 Score=24.29 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=42.2
Q ss_pred HhcCCCEEEeeCCCC-CCCHHHH------------HHHHHHHHHHHHhcCCeEEEEecCHHHH--HhhcCeEEEEE-CCE
Q 046954 57 LANEPEVLLLDEPTS-ALDPIST------------QNIEDVLVKLKKKHGMTIVMVSHSIKQI--QRIADVVCLLV-NGE 120 (146)
Q Consensus 57 l~~~p~llllDEPt~-~LD~~~~------------~~~~~~l~~l~~~~g~tvi~itH~~~~~--~~~~d~v~~l~-~G~ 120 (146)
-..+++++++=|-+. |.+.... ....+.|.+++++.|..+++=+.-...- .++.+..+++. +|+
T Consensus 42 ~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~ 121 (291)
T 1f89_A 42 EQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGK 121 (291)
T ss_dssp HCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSC
T ss_pred ccCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEeceeecccCCCCceEEEEEEECCCCc
Confidence 346788999988665 5544321 3456778888877777766532110000 14567778885 898
Q ss_pred EEEeeC
Q 046954 121 IVEVLK 126 (146)
Q Consensus 121 i~~~g~ 126 (146)
++..-.
T Consensus 122 i~~~y~ 127 (291)
T 1f89_A 122 LIDKHR 127 (291)
T ss_dssp EEEEEE
T ss_pred EEeEEe
Confidence 765433
No 379
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=31.30 E-value=86 Score=23.43 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~ 120 (146)
..+.+.++..+ +.|..+|.+|.+. +.+.+.||.++.+..|.
T Consensus 88 ~e~l~a~~~ak-~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 88 PETVKAAAFAR-GKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred HHHHHHHHHHH-HCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 45556666554 4599999888764 46888999999888774
No 380
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=31.30 E-value=89 Score=18.88 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=23.4
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|-...+.|. ..+.+.+++.. ....+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~ 83 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDG---IEVCKQLRQQK--LMFPILMLTA 83 (136)
T ss_dssp HHCCSEEEEESSCSSSCH---HHHHHHHHHTT--CCCCEEEEEC
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHcCC--CCCCEEEEEC
Confidence 358999999987777764 23444444421 2445555544
No 381
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=31.26 E-value=1e+02 Score=22.27 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.1
Q ss_pred EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-|+-|- +.|++.....+.+.+.++..+.+.-+|++|
T Consensus 19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 57 (263)
T 3l3s_A 19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIH 57 (263)
T ss_dssp EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 46677665 899999999999999998654444444443
No 382
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=31.10 E-value=90 Score=22.60 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=24.8
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-|+-| -+.|+......+.+.+.++.++...-+|++|
T Consensus 17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 56 (266)
T 3fdu_A 17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLR 56 (266)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4556666 5788888888888888887654344444443
No 383
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=31.09 E-value=49 Score=20.83 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+++.+.++++.++.+..||++|-++.
T Consensus 31 ~ee~~~~~~~l~~~~digIIlIte~~a 57 (109)
T 2d00_A 31 AEEAQSLLETLVERGGYALVAVDEALL 57 (109)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEEETTTC
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeHHHH
Confidence 466777788877666889988887654
No 384
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.00 E-value=1.3e+02 Score=20.98 Aligned_cols=54 Identities=13% Similarity=0.298 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCEEEeeCC-------C---CCCCHHHHHHHHHHHHHHH---HhcCCeEEEEecCHHH
Q 046954 52 ALARTLANEPEVLLLDEP-------T---SALDPISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 52 ~ia~al~~~p~llllDEP-------t---~~LD~~~~~~~~~~l~~l~---~~~g~tvi~itH~~~~ 105 (146)
.+..|....|.++++||- . .+-.......+..++..+- ...+..||.+|+.++.
T Consensus 96 ~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp HHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 344455567889999996 1 1111222233444444442 1234678888888753
No 385
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=30.95 E-value=99 Score=19.32 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=25.0
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 63 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 63 llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-+.+|-=.+.|++.....+.++...+....+..|.++.|
T Consensus 15 ~v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~i~I~Gh 53 (123)
T 3td3_A 15 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGH 53 (123)
T ss_dssp EEECCTTCCCCCGGGHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred EEEeCCCChhcCHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 355666667777777777766666665433456777777
No 386
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.94 E-value=53 Score=20.62 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=23.5
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.|++.....+..||++|..
T Consensus 57 ~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTG---IDILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp TTCBEEEEECSBCSSSBH---HHHHHHHHHSTTTTTSCEEEEESC
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHhcccccCCCEEEEecC
Confidence 467999999987776653 334444444111124445555543
No 387
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=30.83 E-value=92 Score=22.52 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=26.9
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-||-| -+.|++.....+.+.+.++..+...-+|++|
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 54 (269)
T 1nzy_A 15 EITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMIT 54 (269)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEE
Confidence 4567777 5899999999999999888654344444443
No 388
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=30.77 E-value=93 Score=22.31 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=15.1
Q ss_pred EEeeCC--CCCCCHHHHHHHHHHHHHHHH
Q 046954 64 LLLDEP--TSALDPISTQNIEDVLVKLKK 90 (146)
Q Consensus 64 lllDEP--t~~LD~~~~~~~~~~l~~l~~ 90 (146)
+-||-| -+.|++.....+.+.+.++..
T Consensus 16 itlnrp~~~Nal~~~~~~~L~~al~~~~~ 44 (257)
T 2ej5_A 16 LTLNRPDQLNAFTEQMNAEVTKALKQAGA 44 (257)
T ss_dssp EEECCGGGTTCBCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHhh
Confidence 334443 466666666666666666543
No 389
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=30.60 E-value=60 Score=23.14 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecCHH
Q 046954 79 QNIEDVLVKLKKK---HGMTIVMVSHSIK 104 (146)
Q Consensus 79 ~~~~~~l~~l~~~---~g~tvi~itH~~~ 104 (146)
.++...+.++.++ .+.+|++|||..-
T Consensus 167 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 195 (263)
T 3c7t_A 167 KRGEVAMQAAVNDTEKDGGNVIFIGHAIT 195 (263)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 3444666666543 3679999999853
No 390
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=30.58 E-value=93 Score=18.87 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=24.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.. .+.-||++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 88 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGG---LEMLDRIKAGG--AKPYVIVISAF 88 (137)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHTT--CCCEEEECCCC
T ss_pred ccCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCcEEEEecC
Confidence 468999999977766653 23444444421 24556666654
No 391
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=30.49 E-value=94 Score=20.62 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEEECCE
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGE 120 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l~~G~ 120 (146)
..+.+.++..+ +.|..+|.+|.. -..+.++||.++.+..+.
T Consensus 101 ~~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 101 RDTVAALAGAA-ERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred HHHHHHHHHHH-HCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 44566666554 458888888865 456788999999886653
No 392
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=30.43 E-value=95 Score=18.96 Aligned_cols=39 Identities=5% Similarity=0.021 Sum_probs=23.3
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|- ..+.+.+++.. .+..+|++|.
T Consensus 42 ~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~--~~~~ii~~s~ 80 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTG---VDFLTEVRERW--PETVRIIITG 80 (139)
T ss_dssp HSCEEEEEEESCCSSSCH---HHHHHHHHHHC--TTSEEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHHhC--CCCcEEEEeC
Confidence 467999999987777764 24444444431 2445555543
No 393
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=30.31 E-value=65 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecCH
Q 046954 79 QNIEDVLVKLKKK---HGMTIVMVSHSI 103 (146)
Q Consensus 79 ~~~~~~l~~l~~~---~g~tvi~itH~~ 103 (146)
.++...+.++.++ .+.+|++|||..
T Consensus 168 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 195 (264)
T 3mbk_A 168 NRSFQVTKEIISECKSKGNNILIVAHAS 195 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEEEECTT
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecHH
Confidence 4555566666442 368999999984
No 394
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=30.21 E-value=63 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecCHH
Q 046954 79 QNIEDVLVKLKKK---HGMTIVMVSHSIK 104 (146)
Q Consensus 79 ~~~~~~l~~l~~~---~g~tvi~itH~~~ 104 (146)
.++...+.++.++ .+.+|++|||..-
T Consensus 177 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 205 (273)
T 3d4i_A 177 ERCAVSMGQIINTCPQDMGITLIVSHSSA 205 (273)
T ss_dssp HHHHHHHHHHHTTSTTCCSEEEEEECTTH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEechHH
Confidence 3444556665433 3689999999853
No 395
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.05 E-value=95 Score=18.81 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=24.1
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|- ..+.+.+++.. .+..+|++|..
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~ 84 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEG---TELLEKAHKLR--PGMKKIMVTGY 84 (132)
T ss_dssp HSCCSEEEECSBCSSSBH---HHHHHHHHHHC--TTSEEEEEESC
T ss_pred cCCCCEEEEecCCCCCch---HHHHHHHHhhC--CCCcEEEEecc
Confidence 468999999977766664 23444444431 24566665543
No 396
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.02 E-value=95 Score=18.81 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=21.8
Q ss_pred hcCCCEEEeeCCCC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~-----~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--.. +.|. ..+.+.+++.. .+.-||++|.
T Consensus 45 ~~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~--~~~~ii~ls~ 88 (140)
T 2qr3_A 45 EENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQY--RDLPVVLFTA 88 (140)
T ss_dssp HSCEEEEEEETTTTC-----CCH---HHHHHHHHHHC--TTCCEEEEEE
T ss_pred cCCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhC--cCCCEEEEEC
Confidence 36799999997665 5543 24444444432 2445555553
No 397
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=30.00 E-value=1e+02 Score=22.43 Aligned_cols=38 Identities=11% Similarity=0.372 Sum_probs=27.3
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.|-||-|- ++|+......+.+.+.++.++...-+|++|
T Consensus 27 ~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVlt 66 (274)
T 4fzw_C 27 TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLT 66 (274)
T ss_dssp EEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 46677774 789999999999999988765454444444
No 398
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=29.79 E-value=65 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=17.0
Q ss_pred HHHHHHHHHH-HHHh--cCCeEEEEecCHH
Q 046954 78 TQNIEDVLVK-LKKK--HGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~-l~~~--~g~tvi~itH~~~ 104 (146)
..++...+.+ +.++ .+.+|++|||-.-
T Consensus 155 ~~R~~~~l~~~i~~~~~~~~~vlvVsHg~~ 184 (240)
T 1qhf_A 155 IDRLLPYWQDVIAKDLLSGKTVMIAAHGNS 184 (240)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEeCHHH
Confidence 4455555555 4322 3789999999853
No 399
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=29.79 E-value=31 Score=23.65 Aligned_cols=37 Identities=8% Similarity=0.266 Sum_probs=24.2
Q ss_pred CEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 62 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 62 ~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..+|+| +|..+.....+.+.++++. ......|++||-
T Consensus 33 ~~iLiD---~G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 69 (227)
T 3iog_A 33 GVTVVG---ATWTPDTARELHKLIKRVS-RKPVLEVINTNY 69 (227)
T ss_dssp CEEEES---CCSSHHHHHHHHHHHHTTC-CSCEEEEECSSS
T ss_pred eEEEEE---CCCChHHHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 477778 4556667777777776642 124567888885
No 400
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=29.65 E-value=1.3e+02 Score=21.59 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHH
Q 046954 53 LARTLANE-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIK 104 (146)
Q Consensus 53 ia~al~~~-p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g-~tvi~itH~~~ 104 (146)
++..|..+ -.++.+|=|..|-.......+.+.+..+.+..+ .-++++.|.+.
T Consensus 31 ~~~~L~~~G~~v~~~d~~g~g~s~~~~~~~~~~i~~~~~~~~~~~v~lvGhS~G 84 (285)
T 1ex9_A 31 IPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHG 84 (285)
T ss_dssp HHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHHHHHHHCCSCEEEEEETTH
T ss_pred HHHHHHhCCCEEEEEeCCCCCCchhhHHHHHHHHHHHHHHhCCCCEEEEEECHh
Confidence 45556544 789999999888877777777777777654433 67999999975
No 401
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=29.65 E-value=88 Score=22.52 Aligned_cols=38 Identities=11% Similarity=0.386 Sum_probs=25.7
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-||-| -+.|+......+.+.+.++.++...-+|++|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 58 (256)
T 3trr_A 19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIIT 58 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4666766 4788888888888888887654344344433
No 402
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=29.59 E-value=1e+02 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=20.2
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcC
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
+|-|+-|- +.|+......+.+.+.++..+..
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~ 48 (268)
T 3i47_A 16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTN 48 (268)
T ss_dssp EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 35566553 67777777777777777654433
No 403
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=29.58 E-value=52 Score=22.63 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHH---hcCCeEEEEecCHH
Q 046954 78 TQNIEDVLVKLKK---KHGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~l~~---~~g~tvi~itH~~~ 104 (146)
..++...+.++.. ..+.+|++|||..-
T Consensus 137 ~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 166 (211)
T 1fzt_A 137 AERVLPYYKSTIVPHILKGEKVLIAAHGNS 166 (211)
T ss_dssp HHHHHHHHHHHHTTHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEeChHH
Confidence 3456666666542 13779999999853
No 404
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=29.56 E-value=99 Score=22.02 Aligned_cols=20 Identities=5% Similarity=0.237 Sum_probs=10.8
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 046954 70 TSALDPISTQNIEDVLVKLK 89 (146)
Q Consensus 70 t~~LD~~~~~~~~~~l~~l~ 89 (146)
.+.|++.....+.+.+.++.
T Consensus 24 ~Nal~~~~~~~L~~al~~~~ 43 (243)
T 2q35_A 24 RNGFSPSIVEGLRHCFSVVA 43 (243)
T ss_dssp TSBSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 35555555555555555554
No 405
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=29.39 E-value=1.2e+02 Score=21.71 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=36.0
Q ss_pred cCCCChhHHHHHHHHHHHhc--CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 40 GAEISVGQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
++..++.+..++.+-+..+. .|+++=+ |=+...+..... +++... ++.|..||++.||
T Consensus 75 GG~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~~~~~~~~~~---~l~~~~-~~~~~kvI~S~Hd 134 (238)
T 1sfl_A 75 GGYGQFTNDSYLNLISDLANINGIDMIDI-EWQADIDIEKHQ---RIITHL-QQYNKEVIISHHN 134 (238)
T ss_dssp TSCBCCCHHHHHHHHHHGGGCTTCCEEEE-ECCTTSCHHHHH---HHHHHH-HHTTCEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEE-EccCCCChHHHH---HHHHHH-HhcCCEEEEEecC
Confidence 45667778889998888875 4776544 444322443333 333333 3457889999997
No 406
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=29.34 E-value=72 Score=26.21 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhcCCCEEEeeC-CC-CCCCHHH-HHHHHHHHHH-HHHhcCCeEEEEecCH
Q 046954 45 VGQAQRVALARTLANEPEVLLLDE-PT-SALDPIS-TQNIEDVLVK-LKKKHGMTIVMVSHSI 103 (146)
Q Consensus 45 gG~~qrv~ia~al~~~p~llllDE-Pt-~~LD~~~-~~~~~~~l~~-l~~~~g~tvi~itH~~ 103 (146)
|..-=-+++..+|+..|+++++=| |+ ...+... ...+.+.+.+ ..+.++.+||+|+--.
T Consensus 252 GR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~ 314 (555)
T 2f48_A 252 GRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGL 314 (555)
T ss_dssp CTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTG
T ss_pred CcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 333335789999999999999966 32 2344333 3666677654 3334567888886544
No 407
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=29.31 E-value=64 Score=26.22 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=34.3
Q ss_pred hcCCCEEEeeCC-------------CCCCCH------HHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEP-------------TSALDP------ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEP-------------t~~LD~------~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|-| .+..+. ..++.+...+.++.+ .|..++++.-+++.
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~~ 297 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKS-VGANVVITQKGIDD 297 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEESSCBCH
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEECCCcCH
Confidence 689999999999 444443 234446777888865 59999999887664
No 408
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=29.28 E-value=90 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.1
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.+-||-|- +.||+.....+.+.+.++.++...-+|++|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVlt 51 (254)
T 3gow_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLT 51 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 46677774 899999999999999988654444444443
No 409
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=29.21 E-value=66 Score=23.10 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=40.8
Q ss_pred HHHhcCCCEEEeeCCCC-CCCHHHH--------HHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcCeEEEEE-CCEEEE
Q 046954 55 RTLANEPEVLLLDEPTS-ALDPIST--------QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVE 123 (146)
Q Consensus 55 ~al~~~p~llllDEPt~-~LD~~~~--------~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d~v~~l~-~G~i~~ 123 (146)
.|-..+++++++=|-+. |.++... ....+.|.+++++.+..+++=+.....-.++.+..+++. +|+++.
T Consensus 30 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~ 108 (276)
T 2w1v_A 30 EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLV 108 (276)
T ss_dssp HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEETTEEEEEEEEECTTSCEEE
T ss_pred HHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEecceeecCCCcEEEEEEEECCCCcEEE
Confidence 44456889999988653 4332211 245677788877777777642211000124567778886 898754
No 410
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=29.09 E-value=31 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.448 Sum_probs=25.7
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHH---HHhcCCeEEEEecCHH
Q 046954 63 VLLLDEPTSALDPISTQNIEDVLVKL---KKKHGMTIVMVSHSIK 104 (146)
Q Consensus 63 llllDEPt~~LD~~~~~~~~~~l~~l---~~~~g~tvi~itH~~~ 104 (146)
++++||...-+.... ..+.+.|.++ .+..|..+|++|..+.
T Consensus 346 vvVIDE~~~L~~~~~-~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 346 VVVVDEFADMMMIVG-KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEESCCTTHHHHTC-HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEEEeCHHHHhhhhh-HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 899999975443211 2233333333 3456899999999875
No 411
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=29.05 E-value=1e+02 Score=23.31 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECC
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNG 119 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G 119 (146)
...+.+.++..+ +.|..+|.+|.+. +.+.+.||.++.+..|
T Consensus 102 T~e~l~a~~~ak-~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 102 TAETVAAARVAR-EKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp CHHHHHHHHHHH-HHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred cHHHHHHHHHHH-HCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 345566666654 4599898888754 4688899999999887
No 412
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.98 E-value=90 Score=19.08 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.7
Q ss_pred cCCCEEEeeCCCCCCCH
Q 046954 59 NEPEVLLLDEPTSALDP 75 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~ 75 (146)
..|+++|+|--..+.|.
T Consensus 61 ~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCcEEEEECCCCCCCH
Confidence 67999999987777664
No 413
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=28.92 E-value=1.3e+02 Score=20.17 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=23.4
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHh--cCCeEEEEec
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKK--HGMTIVMVSH 101 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~--~g~tvi~itH 101 (146)
.|+++|+|=-..+.|- ..+.+.|++.... ...-||++|-
T Consensus 119 ~~dlillD~~lp~~~G---~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDG---YEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCH---HHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 7999999977766664 3455555553211 2455555554
No 414
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=28.85 E-value=49 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 76 ISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 76 ~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
....++.+.++++.++.+..||++|-++.
T Consensus 31 t~~ee~~~~~~~l~~~~digIIlIte~ia 59 (111)
T 2qai_A 31 ESVERARNKLRELLERDDVGIILITERLA 59 (111)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcHHHH
Confidence 34577888888887666899999998754
No 415
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=28.79 E-value=1.7e+02 Score=21.50 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCEEEeeCCCC--------------CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 61 PEVLLLDEPTS--------------ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 61 p~llllDEPt~--------------~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
-+++.+|-|-. +-+.....++.+.++++.+ .|.-++++-++-.++.++..
T Consensus 188 ~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~-~g~~~~lS~~d~~~i~~ly~ 251 (284)
T 2dpm_A 188 GDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSD-TGAYVMLSNSSSALVEELYK 251 (284)
T ss_dssp TCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHT-TTCEEEEEEESCHHHHHHTT
T ss_pred CCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCCHHHHHHHc
Confidence 36888888753 3566778899999999864 58899999999888877654
No 416
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=28.76 E-value=97 Score=22.38 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=28.1
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-||-|- +.||......+.+.+.++.++...-+|++|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 58 (265)
T 3qxz_A 19 VLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLT 58 (265)
T ss_dssp EEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 46677764 899999999999999998765444444443
No 417
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=28.74 E-value=97 Score=20.75 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecC-HHHHHhh---cCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRI---ADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~---~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|.. -..+.++ +|.++.+..+
T Consensus 123 ~~~i~~~~~ak-~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 123 RDIVKAVEAAV-TRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred HHHHHHHHHHH-HCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 44555665554 468888888876 4567788 8988776543
No 418
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=28.72 E-value=1e+02 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=20.8
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcC
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
++-|+-| -+.|++.....+.+.+.++.++..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~ 48 (263)
T 3lke_A 16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETS 48 (263)
T ss_dssp EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSS
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3455554 577888888888888877754433
No 419
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=28.69 E-value=1.2e+02 Score=22.98 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCEEEeeCCC
Q 046954 51 VALARTLANEPEVLLLDEPT 70 (146)
Q Consensus 51 v~ia~al~~~p~llllDEPt 70 (146)
-.+..+-..+|.+|++||--
T Consensus 198 ~~~~~a~~~~~~il~iDEid 217 (389)
T 3vfd_A 198 ALFAVARELQPSIIFIDQVD 217 (389)
T ss_dssp HHHHHHHHSSSEEEEEETGG
T ss_pred HHHHHHHhcCCeEEEEECch
Confidence 33444556788999999983
No 420
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=28.64 E-value=98 Score=23.45 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=29.1
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+|-||-|- ++|++.....+.+.+.++..+...-+|++|
T Consensus 69 ~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVlt 108 (334)
T 3t8b_A 69 RVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLT 108 (334)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 57777775 899999999999999998765454444444
No 421
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=28.60 E-value=82 Score=22.66 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=35.1
Q ss_pred HHHHHHHHHHh---cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 48 AQRVALARTLA---NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 48 ~qrv~ia~al~---~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
.+|.++..||. .+-++++.|+- .++....+.+.++|+.+.-. +..+++|+.+
T Consensus 104 ~rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~-~~~~LiV~~~ 158 (225)
T 1dmg_A 104 MKKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQLS-DKKTLIVLPW 158 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCT-TSCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCC-CCCEEEEECC
Confidence 46778888885 45578899875 56777778888888887421 1445666544
No 422
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=28.48 E-value=57 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCHH------------HHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSIK------------QIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~~------------~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|...+ .+.++||.++...-+
T Consensus 122 ~~~i~~~~~Ak-~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~~~~~ 173 (243)
T 3cvj_A 122 TVPVEMAIESR-NIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDNGAP 173 (243)
T ss_dssp HHHHHHHHHHH-HHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEECCCC
T ss_pred HHHHHHHHHHH-HCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEECCCC
Confidence 44556666554 46999999988754 467889988876543
No 423
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=28.47 E-value=1e+02 Score=18.78 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=22.8
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++. .....||++|..
T Consensus 53 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~--~~~~~ii~~s~~ 92 (143)
T 2qv0_A 53 HNKVDAIFLDINIPSLDG---VLLAQNISQF--AHKPFIVFITAW 92 (143)
T ss_dssp HCCCSEEEECSSCSSSCH---HHHHHHHTTS--TTCCEEEEEESC
T ss_pred hCCCCEEEEecCCCCCCH---HHHHHHHHcc--CCCceEEEEeCC
Confidence 367999999976666553 2344444332 113445666554
No 424
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=28.46 E-value=94 Score=22.49 Aligned_cols=37 Identities=11% Similarity=0.486 Sum_probs=23.3
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-||-|- +.|+......+.+.+.++..+...-+|++
T Consensus 27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 65 (265)
T 3qxi_A 27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGIL 65 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35566553 77888888888888877755434333333
No 425
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=28.27 E-value=94 Score=22.69 Aligned_cols=38 Identities=11% Similarity=0.393 Sum_probs=26.6
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.+-||-| -+.||+.....+.+.+.++.++...-+|++|
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 71 (279)
T 3t3w_A 32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLR 71 (279)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4667766 4889999999999998888654444444444
No 426
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=28.23 E-value=71 Score=22.50 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=16.9
Q ss_pred HHHHHHHHHH-HHH--hcCCeEEEEecCH
Q 046954 78 TQNIEDVLVK-LKK--KHGMTIVMVSHSI 103 (146)
Q Consensus 78 ~~~~~~~l~~-l~~--~~g~tvi~itH~~ 103 (146)
..++...+.+ +.+ ..+.+|++|||-.
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 185 (249)
T 1e58_A 157 IDRVIPYWNETILPRMKSGERVIIAAHGN 185 (249)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcChH
Confidence 4455555655 432 1478999999984
No 427
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=28.07 E-value=1.1e+02 Score=18.84 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=23.3
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|=-..+.| ...+.+.+++.. .+..||++|-.
T Consensus 66 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~~~ii~lt~~ 104 (146)
T 4dad_A 66 DAFDILMIDGAALDTA---ELAAIEKLSRLH--PGLTCLLVTTD 104 (146)
T ss_dssp TTCSEEEEECTTCCHH---HHHHHHHHHHHC--TTCEEEEEESC
T ss_pred CCCCEEEEeCCCCCcc---HHHHHHHHHHhC--CCCcEEEEeCC
Confidence 7899999997665533 344455555432 24556666543
No 428
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.98 E-value=56 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCC----------CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 50 RVALARTLANEPEVLLLDEPTSAL----------DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 50 rv~ia~al~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
|-.+..|--+.|.+|++||--+=. +.....+++..+..+....+..||.+|.+++.+
T Consensus 287 r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 345666777889999999954311 122333444445544334467788888887644
No 429
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=27.97 E-value=98 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=19.3
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcC
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
.+-|+-|- +.||+.....+.+.+.++.++..
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~ 50 (256)
T 3qmj_A 18 TLTLNRPEALNAFNEALYDATAQALLDAADDPQ 50 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 34556553 67777777777777777654333
No 430
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=27.85 E-value=94 Score=22.43 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=20.1
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcC
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHG 93 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g 93 (146)
++-|+-|- +.|+......+.+.+.++.++..
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~ 53 (256)
T 3pe8_A 21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDD 53 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 35566553 67777777777777777754333
No 431
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=27.82 E-value=88 Score=19.51 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.5
Q ss_pred cCCCEEEeeCCCCCCCH
Q 046954 59 NEPEVLLLDEPTSALDP 75 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~ 75 (146)
..|+++|+|--..+.|-
T Consensus 60 ~~~dlillD~~lp~~~g 76 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDG 76 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCCEEEEeCCCCCCcH
Confidence 36999999987777764
No 432
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=27.81 E-value=89 Score=21.54 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=20.7
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHH
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLK 89 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~ 89 (146)
.+|++++-||-.+|-|..-...+.+.|..|+
T Consensus 62 ~n~divFrDee~tg~~~~Md~rl~d~L~~L~ 92 (170)
T 3n1g_B 62 YNPDIIFKDEENSGADRLMTERCKERVNALA 92 (170)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHHHHHHHHH
T ss_pred CCCCcEEecccccCCcccCCHHHHHHHHHHH
Confidence 3999999999965555555555555555554
No 433
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=27.61 E-value=1.6e+02 Score=20.78 Aligned_cols=51 Identities=10% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 54 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 54 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
-.+...+.+++++|-. ..++|.....+ ++... +.|..++...|..+++.+.
T Consensus 95 ~~~~~aGad~I~l~~~-~~~~p~~l~~~---i~~~~-~~g~~v~~~v~t~eea~~a 145 (229)
T 3q58_A 95 DALAQAGADIIAFDAS-FRSRPVDIDSL---LTRIR-LHGLLAMADCSTVNEGISC 145 (229)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHH---HHHHH-HTTCEEEEECSSHHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCChHHHHHH---HHHHH-HCCCEEEEecCCHHHHHHH
Confidence 3456789999999964 44566444444 44443 3489999999999988654
No 434
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.32 E-value=99 Score=18.13 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=23.0
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++++|--..+.|. ..+.+.+++. .....+|++|..
T Consensus 42 ~~~~dlil~D~~l~~~~g---~~~~~~l~~~--~~~~~ii~~s~~ 81 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDG---LSLIRRWRSN--DVSLPILVLTAR 81 (121)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHHT--TCCSCEEEEESC
T ss_pred ccCCCEEEEecCCCCCCH---HHHHHHHHhc--CCCCCEEEEecC
Confidence 468999999976666664 2344444432 124555555543
No 435
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=27.30 E-value=1.1e+02 Score=18.48 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=21.9
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
+|+++|+|=-..+.|- ..+.+.+++........||++|..
T Consensus 51 ~~dlvi~D~~~p~~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNG---LDLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp TCCEEEECSCCSSSCH---HHHHHHHHTSTTCTTCCEEEEESC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCeEEEEeCC
Confidence 6999999977766664 234444433211123445555543
No 436
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=27.30 E-value=1.4e+02 Score=19.95 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=23.8
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
..|+++|+|--..+.|. ..+.+.+++.. .+.-||++|.
T Consensus 42 ~~~dlvllD~~lp~~~g---~~~~~~lr~~~--~~~~ii~lt~ 79 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSG---YEICRMIKETR--PETWVILLTL 79 (220)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHHC--TTSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCcEEEEEc
Confidence 88999999977766654 24445554432 2455665554
No 437
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=27.16 E-value=1.3e+02 Score=21.70 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=26.6
Q ss_pred EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-||-|- +.||......+.+.+.++.++...-+|++|
T Consensus 18 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 56 (261)
T 3pea_A 18 VATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIH 56 (261)
T ss_dssp EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 45566555 889999999999999988654444444443
No 438
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=27.15 E-value=1e+02 Score=22.23 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=23.0
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+|-||-| -++|+......+.+.+.++..+...-+|++
T Consensus 17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 55 (258)
T 4fzw_A 17 LLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVI 55 (258)
T ss_dssp EEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 4556655 367888777777777777755434333333
No 439
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=27.03 E-value=1.1e+02 Score=18.55 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHhcCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 54 ARTLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 54 a~al~~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
..++...+ .+++| .....+|......+..+.+++.+ .|..+.++.-...
T Consensus 36 ~~~~~~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 85 (117)
T 4hyl_A 36 LPRVTAKG-KMILDLREVSYMSSAGLRVLLSLYRHTSN-QQGALVLVGVSEE 85 (117)
T ss_dssp GGGCCTTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred HHHHccCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 33334445 89999 89999999999999999999865 5888888766543
No 440
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.75 E-value=82 Score=18.91 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=19.2
Q ss_pred HhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 57 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 57 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
--.+|+++|+|-...+.|. ..+.+.+++.. ....+|++|.
T Consensus 48 ~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~t~ 87 (130)
T 3eod_A 48 GGFTPDLMICDIAMPRMNG---LKLLEHIRNRG--DQTPVLVISA 87 (130)
T ss_dssp TTCCCSEEEECCC-----C---HHHHHHHHHTT--CCCCEEEEEC
T ss_pred hcCCCCEEEEecCCCCCCH---HHHHHHHHhcC--CCCCEEEEEc
Confidence 3467999999976555442 33444444321 2344544443
No 441
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.67 E-value=56 Score=24.22 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=29.5
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
.+++++++||.- .+.......+...+.+.. .+..+|+++....
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~~ 151 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH 151 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCcc
Confidence 357999999975 456677777777776643 2556777776653
No 442
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=26.64 E-value=1.2e+02 Score=22.09 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=23.5
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-|+-| -+.|+......+.+.+.++.++...-+|++
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 70 (278)
T 4f47_A 32 IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL 70 (278)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 3556655 378888888888888887755434333333
No 443
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=26.43 E-value=64 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHH---hcCCeEEEEecCHH
Q 046954 79 QNIEDVLVKLKK---KHGMTIVMVSHSIK 104 (146)
Q Consensus 79 ~~~~~~l~~l~~---~~g~tvi~itH~~~ 104 (146)
.++...+.++.. ..+.+|++|||-.-
T Consensus 165 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 193 (257)
T 3gp3_A 165 ARVLPLWNESIAPAVKAGKQVLIAAHGNS 193 (257)
T ss_dssp HHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcHH
Confidence 445555555432 24789999999843
No 444
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=26.42 E-value=1.1e+02 Score=22.14 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=27.5
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-|+-|- +.|++.....+.+.+.++.++...-+|++|
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 62 (267)
T 3oc7_A 23 RLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLA 62 (267)
T ss_dssp EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 56777774 889999999999999988654444444443
No 445
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=26.40 E-value=1.1e+02 Score=22.34 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=25.2
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
+|-||-| -+.||......+.+.+.++..+...-+|++
T Consensus 29 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 67 (279)
T 3g64_A 29 TVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVL 67 (279)
T ss_dssp EEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 4666766 378888888888888888765434334443
No 446
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=26.37 E-value=39 Score=25.64 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHh--------cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 45 VGQAQRVALARTLA--------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 45 gG~~qrv~ia~al~--------~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
+++++.-.+..++- .+|+++. +|+++..+...+++.|.++... +..+|.+...
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~----iSA~~g~Gi~~L~~~I~~~~~~-----~~~~~~~~~~ 289 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIR----ISARSGEGISEMWDKMKDFQDL-----MLASGELTAK 289 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEE----CCTTTCTTHHHHHHHHHHHHHH-----HHHHSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEE----EecCCCCCHHHHHHHHHHHHHH-----HhhCchHHHH
Confidence 44455555555542 2566554 9999999999999999987643 2456776654
No 447
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=26.33 E-value=1.2e+02 Score=22.48 Aligned_cols=38 Identities=8% Similarity=0.303 Sum_probs=28.4
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+|-||-|- +.|++.....+.+.+.++..+...-+|++|
T Consensus 42 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 81 (298)
T 3qre_A 42 IITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLT 81 (298)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 56777764 899999999999999998765444444444
No 448
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=26.32 E-value=1.1e+02 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECCE
Q 046954 78 TQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGE 120 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G~ 120 (146)
...+.+.++..+ +.|..+|.+|.+. +.+.+.||.++.+..|.
T Consensus 110 T~e~l~a~~~Ak-~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 152 (367)
T 2poc_A 110 TADSILALQYCL-ERGALTVGIVNSVGSSMSRQTHCGVHINAGP 152 (367)
T ss_dssp CHHHHHHHHHHH-HTTCEEEEEESSTTSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHH-HCCCCEEEEECCCCChHHHhCCEEEEcCCCC
Confidence 345666666654 4698888888764 57888999999887663
No 449
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=26.32 E-value=1.3e+02 Score=21.95 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=24.6
Q ss_pred EEEeeCCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt-~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+|-||-|- +.|+......+.+.+.++..+...-+|++|
T Consensus 36 ~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 74 (277)
T 4di1_A 36 TLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLF 74 (277)
T ss_dssp EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 45566553 788888888888888887654444444443
No 450
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=26.27 E-value=1.9e+02 Score=21.10 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHhcCCCEEEe-eCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHh
Q 046954 53 LARTLANEPEVLLL-DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 108 (146)
Q Consensus 53 ia~al~~~p~llll-DEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~ 108 (146)
+..|...+.+.++| +- .|++.....+.+. +++.|..+++..|+.+++..
T Consensus 128 v~~A~~~GAD~VlLi~a---~l~~~~l~~l~~~----a~~lGl~~lvev~t~ee~~~ 177 (272)
T 3qja_A 128 IHEARAHGADMLLLIVA---ALEQSVLVSMLDR----TESLGMTALVEVHTEQEADR 177 (272)
T ss_dssp HHHHHHTTCSEEEEEGG---GSCHHHHHHHHHH----HHHTTCEEEEEESSHHHHHH
T ss_pred HHHHHHcCCCEEEEecc---cCCHHHHHHHHHH----HHHCCCcEEEEcCCHHHHHH
Confidence 34445677887766 32 3444443333333 34469999999999988764
No 451
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=26.27 E-value=98 Score=22.95 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=10.9
Q ss_pred HHHHHhcCCCEEEeeCCCC
Q 046954 53 LARTLANEPEVLLLDEPTS 71 (146)
Q Consensus 53 ia~al~~~p~llllDEPt~ 71 (146)
+..++-.+++++++..|.+
T Consensus 172 l~~~l~~~~~~v~~~~p~n 190 (407)
T 3nra_A 172 LEEAFKAGARVFLFSNPNN 190 (407)
T ss_dssp HHHHHHTTCCEEEEESSCT
T ss_pred HHHHHhhCCcEEEEcCCCC
Confidence 3344444667777776654
No 452
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=26.12 E-value=71 Score=24.99 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Q 046954 47 QAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 106 (146)
Q Consensus 47 ~~qrv~ia~al~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~ 106 (146)
+.+....+...+.+++++|+..... ++.... ..+.+.++ +.++.+|++.+..+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~----~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY----RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT----TCCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH----HcCCCEEEEEECccch
Confidence 7778888888889999777765543 455443 44444443 3578888888877754
No 453
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=26.08 E-value=1e+02 Score=22.38 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=24.7
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-||-| -+.|++.....+.+.+.++.++...-+|++|
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 55 (275)
T 1dci_A 16 HVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVS 55 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 4667766 4788888888888888887544343333333
No 454
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=25.92 E-value=1.5e+02 Score=19.89 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=23.7
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 101 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH 101 (146)
-..|+++|+|--..+.|.. .+.+.+++.. .+.-||++|.
T Consensus 49 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~~--~~~~ii~lt~ 87 (233)
T 1ys7_A 49 ENRPDAIVLDINMPVLDGV---SVVTALRAMD--NDVPVCVLSA 87 (233)
T ss_dssp HSCCSEEEEESSCSSSCHH---HHHHHHHHTT--CCCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhcC--CCCCEEEEEc
Confidence 4689999999877666642 3444444321 2455666554
No 455
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=25.91 E-value=87 Score=22.35 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=32.4
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhc---------------CCeEEEEecC-H---HHHHhhcCeEEEEECC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH---------------GMTIVMVSHS-I---KQIQRIADVVCLLVNG 119 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~---------------g~tvi~itH~-~---~~~~~~~d~v~~l~~G 119 (146)
.+.++++|||... ...+.+.+.++.+.... ..-+|++|.. + .....+.+|+.++.-.
T Consensus 102 ~~~kIiiLDEad~----~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~ 177 (212)
T 1tue_A 102 TDTKVAMLDDATT----TCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP 177 (212)
T ss_dssp TTCSSEEEEEECH----HHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECC
T ss_pred CCCCEEEEECCCc----hhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcC
Confidence 4678999999973 33344444555543211 1244555543 1 1234577898888755
Q ss_pred E
Q 046954 120 E 120 (146)
Q Consensus 120 ~ 120 (146)
.
T Consensus 178 ~ 178 (212)
T 1tue_A 178 N 178 (212)
T ss_dssp S
T ss_pred C
Confidence 3
No 456
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=25.86 E-value=1.3e+02 Score=21.71 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=17.9
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHh
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~ 91 (146)
.+-|+-| -+.|+......+.+.+.++.++
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d 51 (265)
T 3swx_A 21 VIGLNRPAKRNAFDKTMLEELALALGEYETD 51 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhhC
Confidence 3455555 3667777777777777666543
No 457
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=25.86 E-value=1e+02 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=19.8
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHh
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~ 91 (146)
+|.||-|- +.|+......+.+.+.++..+
T Consensus 37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d 67 (278)
T 3h81_A 37 IITLNRPQALNALNSQVMNEVTSAATELDDD 67 (278)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhC
Confidence 45566554 778888777777777777543
No 458
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=25.71 E-value=66 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=17.3
Q ss_pred HHHHHHHHHH-HHHh--cCCeEEEEecCHH
Q 046954 78 TQNIEDVLVK-LKKK--HGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~-l~~~--~g~tvi~itH~~~ 104 (146)
..++...+.+ +.++ .+.+|++|||-.-
T Consensus 162 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 191 (267)
T 2hhj_A 162 LERLLPYWNERIAPEVLRGKTILISAHGNS 191 (267)
T ss_dssp HHHHHHHHHHHTHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcCcHH
Confidence 4455555555 4332 4789999999843
No 459
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=25.67 E-value=1.3e+02 Score=18.90 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=44.6
Q ss_pred HHHh-cCCCEEEee-CCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 55 RTLA-NEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 55 ~al~-~~p~llllD-EPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
..+. .+++.+++| .-..-+|......+.+..+.++. .|..++++.=.++.+..+
T Consensus 36 ~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l-~G~~~~l~Gi~p~va~~l 91 (123)
T 3zxn_A 36 HNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAEL-LGLPFVLTGIKPAVAITL 91 (123)
T ss_dssp HHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHH-HTCCEEEECCCHHHHHHH
T ss_pred HHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHH
Confidence 3443 578999999 88999999999999999999864 599999998888766544
No 460
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=25.64 E-value=84 Score=19.61 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=18.0
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
..|+++|+|--..+.| ...+.+.+++.. .+.-||++|..
T Consensus 49 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~~~ii~ls~~ 87 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAE---AIDGLVRLKRFD--PSNAVALISGE 87 (154)
T ss_dssp CCCSEEEECC---------CHHHHHHHHHHC--TTSEEEEC---
T ss_pred CCCCEEEEeCCCCCCc---hHHHHHHHHHhC--CCCeEEEEeCC
Confidence 5799999997655443 233444444432 24566665544
No 461
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=25.36 E-value=1.1e+02 Score=22.18 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=22.7
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVM 98 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~ 98 (146)
++-||-| -+.|++.....+.+.+.++..+...-+|+
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vV 58 (280)
T 1pjh_A 21 IIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTI 58 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEE
Confidence 3456655 47888888888888887775433333333
No 462
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=25.30 E-value=1e+02 Score=22.59 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=27.3
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-|+-|- +.||+.....+.+.+.++..+...-+|++|
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 77 (286)
T 3myb_A 38 TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLA 77 (286)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 56777775 799999999999999988654444444443
No 463
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=25.25 E-value=1.2e+02 Score=21.96 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=27.6
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
.+-|+-|- +.|+......+.+.+.++.++...-+|++|
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 62 (262)
T 3r9q_A 23 TVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLW 62 (262)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 46667663 899999999999999998755444444444
No 464
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=25.08 E-value=1.2e+02 Score=18.31 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=23.0
Q ss_pred hcCCCEEEeeCCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~-~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--.. +.|. ..+.+.+++. .+.-||++|..
T Consensus 52 ~~~~dlii~d~~~~~~~~g---~~~~~~l~~~---~~~~ii~ls~~ 91 (140)
T 3cg0_A 52 DLRPDIALVDIMLCGALDG---VETAARLAAG---CNLPIIFITSS 91 (140)
T ss_dssp HHCCSEEEEESSCCSSSCH---HHHHHHHHHH---SCCCEEEEECC
T ss_pred hCCCCEEEEecCCCCCCCH---HHHHHHHHhC---CCCCEEEEecC
Confidence 36799999997664 4553 2444555543 24555555543
No 465
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=25.04 E-value=72 Score=20.27 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCChhhhcCCcCCCChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 20 NEVYKLLSLADLDSSFLSKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
..+...|+..|.. -...-+.|+. ++..+--..|+++|+|==.-+.|-.. +.+.++ + .+.-||++
T Consensus 22 ~~l~~~L~~~G~~------v~~~a~~g~e---Al~~~~~~~~DlvllDi~mP~~~G~e---l~~~lr---~-~~ipvI~l 85 (123)
T 2lpm_A 22 MLIEDTLCELGHE------VAATASRMQE---ALDIARKGQFDIAIIDVNLDGEPSYP---VADILA---E-RNVPFIFA 85 (123)
T ss_dssp HHHHHHHHHHCCC------CCBCSCCHHH---HHHHHHHCCSSEEEECSSSSSCCSHH---HHHHHH---H-TCCSSCCB
T ss_pred HHHHHHHHHCCCE------EEEEECCHHH---HHHHHHhCCCCEEEEecCCCCCCHHH---HHHHHH---c-CCCCEEEE
Confidence 3455667666642 1223455654 23333457899999998777777542 333333 2 36666666
Q ss_pred ec
Q 046954 100 SH 101 (146)
Q Consensus 100 tH 101 (146)
|=
T Consensus 86 Ta 87 (123)
T 2lpm_A 86 TG 87 (123)
T ss_dssp CT
T ss_pred ec
Confidence 64
No 466
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=25.02 E-value=74 Score=21.78 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 43 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 43 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+|.--++=..=|.++....++-+.++-.. - ....+.+.+.++. +...++++|.|++..
T Consensus 67 ~~Spa~Ra~qTa~~~~~~~~~~~~~~ly~-~---~~~~~l~~i~~~~-~~~~~vllvGHnP~l 124 (186)
T 4hbz_A 67 VCSTAARTRQTLAATGISAQVRYRDELYG-G---GVDEILAEVAAVP-ADASTVLVVGHAPTI 124 (186)
T ss_dssp EEESSHHHHHHHHHHTCCSEEEEEGGGTT-C---CHHHHHHHHHTSC-TTCSEEEEEECTTHH
T ss_pred ccCcchhHHHHHHhhcccccccccccccc-c---ChHHHHHHHHhcc-CCCCeeeecccCCCH
Confidence 34443333344556666666666555332 2 3445666666654 346799999999753
No 467
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=25.01 E-value=1.2e+02 Score=22.31 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=28.2
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
+|-||-| -+.|+......+.+.+.++..+...-+|++|
T Consensus 36 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 75 (290)
T 3sll_A 36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVIT 75 (290)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 5667877 4899999999999999998654444444443
No 468
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=24.75 E-value=1.2e+02 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.450 Sum_probs=28.0
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-|+-|- +.||......+.+.+.++..+...-+|++|
T Consensus 22 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 61 (275)
T 4eml_A 22 KIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLT 61 (275)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 46677775 899999999999999998754444344433
No 469
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=24.74 E-value=79 Score=23.24 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCCEEEeeCCCCCCCHHHHHHHHHHHHHHH---------HhcCCeEEEEecC
Q 046954 60 EPEVLLLDEPTSALDPISTQNIEDVLVKLK---------KKHGMTIVMVSHS 102 (146)
Q Consensus 60 ~p~llllDEPt~~LD~~~~~~~~~~l~~l~---------~~~g~tvi~itH~ 102 (146)
+..+|++||.- .|.+..+..+...+.+.. ...+..+|++|+.
T Consensus 96 ~~g~L~LDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEIG-DISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESCT-TCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEeccc-cCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 46799999954 567777777777765421 0124678888876
No 470
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=24.71 E-value=16 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHHhcC-CCEEEeeCCCC
Q 046954 42 EISVGQAQRVALARTLANE-PEVLLLDEPTS 71 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~-p~llllDEPt~ 71 (146)
-+.+|..+--+|..||-.+ ...|+.||.++
T Consensus 229 ~vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 259 (264)
T 2r5f_A 229 GLAGGVRKVQAIKGALLGGYLDVLITDVGTA 259 (264)
T ss_dssp EECCCGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred EEEcCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 4688888887887777665 58999999875
No 471
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=24.71 E-value=1.1e+02 Score=24.83 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=33.4
Q ss_pred hcCCCEEEeeCCCC-------------CCCH------HHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEPTS-------------ALDP------ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEPt~-------------~LD~------~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|-|.. ..+. ...+.+.+.+.++.+ .|..+|++.-.++.
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~-~g~~vVi~~~~I~d 301 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEE-TGANIVLSKLPIGD 301 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHT-TTCSEEEESSCCCH
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEECCCccH
Confidence 78999999999842 2221 123456677888874 59999999887653
No 472
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=24.57 E-value=78 Score=23.36 Aligned_cols=57 Identities=16% Similarity=0.325 Sum_probs=33.9
Q ss_pred cCCCChhHHHHHHHHHHHhc-C-CCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Q 046954 40 GAEISVGQAQRVALARTLAN-E-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 40 ~~~LSgG~~qrv~ia~al~~-~-p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~ 103 (146)
++..++.+..++.+-+..+. + |+++=++ =+ .+. ..+.+++... ++.|..||++.||.
T Consensus 111 GG~~~~~~~~~~~ll~~~l~~g~~dyIDvE-l~--~~~---~~~~~l~~~a-~~~~~kvI~S~Hdf 169 (276)
T 3o1n_A 111 GGEQALTTGQYIDLNRAAVDSGLVDMIDLE-LF--TGD---DEVKATVGYA-HQHNVAVIMSNHDF 169 (276)
T ss_dssp TCSBCCCHHHHHHHHHHHHHHTCCSEEEEE-GG--GCH---HHHHHHHHHH-HHTTCEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCEEEEE-Cc--CCH---HHHHHHHHHH-HhCCCEEEEEeecC
Confidence 45566667788888877664 3 7776544 22 122 2233333333 34588899999974
No 473
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=24.54 E-value=28 Score=26.11 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=28.6
Q ss_pred cCCCEEEeeCC------CCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCH
Q 046954 59 NEPEVLLLDEP------TSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSI 103 (146)
Q Consensus 59 ~~p~llllDEP------t~~LD~~~~~~~-~~~l~~l~~~~g~tvi~itH~~ 103 (146)
..+.++|+|-| |.++++. ++ .+.|..+.+.-+.+|+.+++|.
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~---~L~~~~I~~L~k~~~~lvvt~saD~ 196 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCS---ELNNKFITPLLRQCKVLIIVSNSDI 196 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHH---HHHHHTHHHHHHTCSEEEEEEECGG
T ss_pred CCCeEEEEcChHHHHHhccCCCHH---HHHHHHHHHHHHhcceEEEEeccCc
Confidence 35679999999 3345544 44 5666666555567888888886
No 474
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=24.48 E-value=92 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 046954 71 SALDPISTQNIEDVLVKLK 89 (146)
Q Consensus 71 ~~LD~~~~~~~~~~l~~l~ 89 (146)
+.|+......+.+.+.++.
T Consensus 34 Nal~~~~~~~L~~al~~~~ 52 (272)
T 1hzd_A 34 NSLSKNLIKMLSKAVDALK 52 (272)
T ss_dssp TCBCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 475
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=24.46 E-value=1.1e+02 Score=22.04 Aligned_cols=32 Identities=9% Similarity=0.299 Sum_probs=22.2
Q ss_pred EEEeeCC--CCCCCHHHHHHHHHHHHHHHHhcCC
Q 046954 63 VLLLDEP--TSALDPISTQNIEDVLVKLKKKHGM 94 (146)
Q Consensus 63 llllDEP--t~~LD~~~~~~~~~~l~~l~~~~g~ 94 (146)
.|-||-| .+.|++.....+.+.+.++.++...
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~v 54 (265)
T 3kqf_A 21 KISLNRERQANSLSLALLEELQNILTQINEEANT 54 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTC
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCc
Confidence 4566666 3788888888888888887644333
No 476
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=24.46 E-value=84 Score=21.05 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|.. -..+.++||.++.+..+
T Consensus 130 ~~~~~~~~~ak-~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 130 PNILAAFREAK-AKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHHHHHHHH-HCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 34555665554 458888888764 34677889988876544
No 477
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=24.27 E-value=1.4e+02 Score=21.65 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=16.9
Q ss_pred EEeeCC--CCCCCHHHHHHHHHHHHHHHHh
Q 046954 64 LLLDEP--TSALDPISTQNIEDVLVKLKKK 91 (146)
Q Consensus 64 lllDEP--t~~LD~~~~~~~~~~l~~l~~~ 91 (146)
+-||-| -+.|+......+.+.+.++.++
T Consensus 26 itlnrp~~~Nal~~~~~~~L~~al~~~~~d 55 (273)
T 2uzf_A 26 VTINRPEVRNAFTPKTVAEMIDAFSRARDD 55 (273)
T ss_dssp EEECCGGGTTCCCHHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 445544 4667777777777766666543
No 478
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=24.17 E-value=2.1e+02 Score=20.87 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=37.7
Q ss_pred CEEEeeCCCCC--------------CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhhcC
Q 046954 62 EVLLLDEPTSA--------------LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 111 (146)
Q Consensus 62 ~llllDEPt~~--------------LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~~d 111 (146)
+++.+|-|-.. -+.....++.+.++++.+ .|.-++++-+|-.++.++..
T Consensus 176 ~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~-~~~~~~lS~~d~~~i~~ly~ 238 (278)
T 2g1p_A 176 SVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE-RHIPVLISNHDTMLTREWYQ 238 (278)
T ss_dssp EEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHH-TTCCEEEEEECCHHHHHHTT
T ss_pred CEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCeEEEEcCCCHHHHHHhc
Confidence 68899988632 355667889999999864 58899999999888876654
No 479
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=24.15 E-value=1.1e+02 Score=22.35 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=9.7
Q ss_pred HHHHhcCCCEEEeeCCC
Q 046954 54 ARTLANEPEVLLLDEPT 70 (146)
Q Consensus 54 a~al~~~p~llllDEPt 70 (146)
..++-.+++++++-.|.
T Consensus 144 ~~~l~~~~~~v~i~~p~ 160 (377)
T 3fdb_A 144 EKGFQAGARSILLCNPY 160 (377)
T ss_dssp HHHHHTTCCEEEEESSB
T ss_pred HHHhccCCCEEEEeCCC
Confidence 33444456666666664
No 480
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.11 E-value=1.3e+02 Score=18.34 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=24.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|. ..+.+.+++.. .+..||++|-.
T Consensus 47 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~ls~~ 86 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSG---MDILREIKKIT--PHMAVIILTGH 86 (143)
T ss_dssp TTTCCEEEEESCCSSSCH---HHHHHHHHHHC--TTCEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCcH---HHHHHHHHHhC--CCCeEEEEECC
Confidence 358999999987776664 33444454432 24555555543
No 481
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=24.01 E-value=30 Score=28.34 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=32.4
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|-+.+..+ ++...+.++.+ .|+.++++.-+++.
T Consensus 214 lenp~Ill~d~~Is~~~-----~l~~~le~i~~-~g~~lvIi~~~I~~ 255 (547)
T 1kp8_A 214 LESPFILLADKKISNIR-----EMLPVLEAVAK-AGKPLLIIAEDVEG 255 (547)
T ss_dssp EESCEEECEESEECCGG-----GTHHHHHHHHG-GGCCEEEEESEECH
T ss_pred ecCceEEEEcCcCCCHH-----HHHHHHHHHHh-cCCCEEEECCCcCH
Confidence 57999999999877543 46778888765 58999998777553
No 482
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.96 E-value=40 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHhcC-CCEEEeeCCCCCCCHHHHHHHHHHHHH
Q 046954 54 ARTLANE-PEVLLLDEPTSALDPISTQNIEDVLVK 87 (146)
Q Consensus 54 a~al~~~-p~llllDEPt~~LD~~~~~~~~~~l~~ 87 (146)
..++-.. +.++++||.- .+++.....+.+.|.+
T Consensus 653 ~~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 653 TEAVRRRPYSVILFDEIE-KAHPDVFNILLQILDD 686 (854)
T ss_dssp HHHHHHCSSEEEEESSGG-GSCHHHHHHHHHHHTT
T ss_pred HHHHHhCCCeEEEEeccc-ccCHHHHHHHHHHhcc
Confidence 3444444 4799999994 5777777777776654
No 483
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=23.93 E-value=2.1e+02 Score=20.77 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=30.0
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHH-------HHhcCCeEEEEecCH------HHHHhhcCeEEEEE
Q 046954 66 LDEPTSALDPISTQNIEDVLVKL-------KKKHGMTIVMVSHSI------KQIQRIADVVCLLV 117 (146)
Q Consensus 66 lDEPt~~LD~~~~~~~~~~l~~l-------~~~~g~tvi~itH~~------~~~~~~~d~v~~l~ 117 (146)
+|--+...++.....+...+... .+..|.|.++++.+. ..+..+||-|+.|+
T Consensus 148 ldsl~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~~~~~~~~~~~l~~laD~VI~lr 212 (260)
T 3bs4_A 148 MSGYLEVFTPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWEGVKDKRVLLSVYRRADYVLKTR 212 (260)
T ss_dssp GGGGGGTSCHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEESCSCHHHHHHHHHHCSEEEEEE
T ss_pred cchHHHHhChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEECCCcccccccceEEEeeEEEEEE
Confidence 67666667776654544444332 331455555554342 34556899999994
No 484
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=23.92 E-value=1.3e+02 Score=21.58 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=24.9
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCC-eEEEE
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGM-TIVMV 99 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~-tvi~i 99 (146)
++-|+-|- +.|+......+.+.+.++..+... .||+.
T Consensus 24 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVlt 63 (258)
T 3lao_A 24 LIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLF 63 (258)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 45667663 788888888888888887654343 33433
No 485
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=23.91 E-value=17 Score=26.68 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHHhcC-CCEEEeeCCCC
Q 046954 42 EISVGQAQRVALARTLANE-PEVLLLDEPTS 71 (146)
Q Consensus 42 ~LSgG~~qrv~ia~al~~~-p~llllDEPt~ 71 (146)
-+.+|..+--+|..||-.+ ...|+.||.|+
T Consensus 226 ~vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 256 (266)
T 2gnp_A 226 AVAYGDTKVSSILSVLRANLVNHLITDKNTI 256 (266)
T ss_dssp EECCSGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred EEecChhhHHHHHHHHhcCCCCEEEECHHHH
Confidence 4578887777777777665 58999999876
No 486
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=23.79 E-value=1.3e+02 Score=18.68 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=22.4
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 046954 64 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 102 (146)
Q Consensus 64 lllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~ 102 (146)
+++|-=.+.|++.....+.++...+....+..|.++.|-
T Consensus 19 i~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~Ght 57 (123)
T 3oon_A 19 IEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHT 57 (123)
T ss_dssp EEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEECC
T ss_pred EEeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEEe
Confidence 455555666666666666666555543333456666664
No 487
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.75 E-value=78 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecC-HHHHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|.+ -+.+.++||.++.+..+
T Consensus 106 ~~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 146 (201)
T 3fxa_A 106 GELLNLIPACK-TKGSTLIGVTENPDSVIAKEADIFFPVSVS 146 (201)
T ss_dssp HHHHTTHHHHH-HHTCEEEEEESCTTSHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHH-HcCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence 44556666654 458888888875 44678899999988765
No 488
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.71 E-value=1.3e+02 Score=18.23 Aligned_cols=39 Identities=8% Similarity=0.261 Sum_probs=24.1
Q ss_pred cCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEe-cC
Q 046954 59 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS-HS 102 (146)
Q Consensus 59 ~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~it-H~ 102 (146)
..|+++|+|--..+.|.. .+.+.+++. ..+.-+|++| ..
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~~--~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKEQ--TKQPSVLILTTGR 98 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTTS--SSCCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhh--CCCCCEEEEECCC
Confidence 579999999877766642 344444331 1256677776 54
No 489
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=23.64 E-value=1.3e+02 Score=22.36 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=21.5
Q ss_pred HHHHHhc-CCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 046954 53 LARTLAN-EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 94 (146)
Q Consensus 53 ia~al~~-~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~ 94 (146)
+..++-. +|+++++-+|..+.... ++.|.+++++.|.
T Consensus 161 l~~~i~~~~~~~v~~~~~~~~~~~~-----l~~l~~l~~~~~~ 198 (420)
T 3gbx_A 161 MAKLAKEHKPKMIIGGFSAYSGVVD-----WAKMREIADSIGA 198 (420)
T ss_dssp HHHHHHHHCCSEEEECCTTCCSCCC-----HHHHHHHHHHTTC
T ss_pred HHHHHHhcCCeEEEEecCccCCccC-----HHHHHHHHHHcCC
Confidence 3344443 58888888887764221 3455666665553
No 490
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=23.57 E-value=83 Score=25.69 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCEEEeeCCCC--------------CCCH-----HHHHHHHHHHHHHHHhcCCeEEEEecCHH
Q 046954 60 EPEVLLLDEPTS--------------ALDP-----ISTQNIEDVLVKLKKKHGMTIVMVSHSIK 104 (146)
Q Consensus 60 ~p~llllDEPt~--------------~LD~-----~~~~~~~~~l~~l~~~~g~tvi~itH~~~ 104 (146)
+|+++++|-|.. .-|. ..++.+...+.++.+ .|.-++++.-+++
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~-~g~~lvI~~~~I~ 303 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIID-AGAQVVLTTKGID 303 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHT-TCCSEEEESSCCC
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh-hCCCEEEEcCCCC
Confidence 999999998852 2232 233457788888875 5999999987765
No 491
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=23.54 E-value=1.3e+02 Score=22.14 Aligned_cols=38 Identities=11% Similarity=0.454 Sum_probs=25.3
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMVS 100 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~it 100 (146)
++-|+-|- +.|+......+.+.+.++..+.+.-+|++|
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 79 (289)
T 3t89_A 40 KITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILT 79 (289)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 45677664 788888888888888887654344344443
No 492
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=23.41 E-value=18 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=25.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 105 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~ 105 (146)
+.+|+++++|-+.+..+. +...+.++.+ .|..++++.-+++.
T Consensus 215 ~en~~Ill~d~~I~~~~~-----l~~~le~i~~-~g~~lvIi~~~I~~ 256 (545)
T 1iok_A 215 LEDAYILLHEKKLSSLQP-----MVPLLESVIQ-SQKPLLIVAEDVEG 256 (545)
T ss_dssp EEEEEEEECSSCBCCCCC-----------------CCCCEEEESCBC-
T ss_pred ecCCeEEEEcCCcCCHHH-----HHHHHHHHHh-cCCCEEEECCCcCH
Confidence 579999999999887654 5677777765 58999999887654
No 493
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=23.22 E-value=1.3e+02 Score=18.25 Aligned_cols=42 Identities=10% Similarity=0.290 Sum_probs=25.2
Q ss_pred hcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHH---hcCCeEEEEecC
Q 046954 58 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK---KHGMTIVMVSHS 102 (146)
Q Consensus 58 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~---~~g~tvi~itH~ 102 (146)
-..|+++|+|--..+.|-. .+.+.+++... .....++++|..
T Consensus 52 ~~~~dlvllD~~lp~~~g~---~~~~~l~~~~~~~~~~~~~ii~~s~~ 96 (140)
T 3c97_A 52 NRQFDVIIMDIQMPVMDGL---EAVSEIRNYERTHNTKRASIIAITAD 96 (140)
T ss_dssp HSCCSEEEECTTCCSSCHH---HHHHHHHHHHHHHTCCCCCCEEEESS
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHhhhhhcCCCceEEEEEeCc
Confidence 4689999999877777642 34445544311 124456666654
No 494
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=23.16 E-value=1.4e+02 Score=21.98 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCH-HHHHhhcCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~~-~~~~~~~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|.+. +.+.++||.++...-|
T Consensus 154 ~~vi~al~~Ak-~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g 194 (306)
T 1nri_A 154 PYVIAGLQYAK-SLGALTISIASNPKSEMAEIADIAIETIVG 194 (306)
T ss_dssp HHHHHHHHHHH-HHTCEEEEEESSTTCHHHHHSSEEEECCCC
T ss_pred HHHHHHHHHHH-HCCCEEEEEECCCCChHHHhCCEEEEcCCC
Confidence 34556666554 4598888888764 5788899998888655
No 495
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=23.11 E-value=1.2e+02 Score=22.07 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.6
Q ss_pred CCCCCHH
Q 046954 70 TSALDPI 76 (146)
Q Consensus 70 t~~LD~~ 76 (146)
++|.|..
T Consensus 67 caG~Dl~ 73 (276)
T 2j5i_A 67 TAGMDLK 73 (276)
T ss_dssp BCCBCHH
T ss_pred cCCcChh
Confidence 4455554
No 496
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=23.10 E-value=1.3e+02 Score=20.14 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecC-HHHHHhh---cCeEEEEECC
Q 046954 79 QNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRI---ADVVCLLVNG 119 (146)
Q Consensus 79 ~~~~~~l~~l~~~~g~tvi~itH~-~~~~~~~---~d~v~~l~~G 119 (146)
..+.+.++..+ +.|..+|.+|.. -..+.++ ||.++.+..+
T Consensus 127 ~~~i~~~~~ak-~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 127 ANVIQAIQAAH-DREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred HHHHHHHHHHH-HCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 44556666554 468877777775 4578889 9998887654
No 497
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=23.10 E-value=99 Score=22.19 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=24.7
Q ss_pred EEEeeCCC--CCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 046954 63 VLLLDEPT--SALDPISTQNIEDVLVKLKKKHGMTIVMV 99 (146)
Q Consensus 63 llllDEPt--~~LD~~~~~~~~~~l~~l~~~~g~tvi~i 99 (146)
++-||-|- +.||......+.+.+.++.++...-+|++
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 56 (255)
T 3p5m_A 18 RIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLL 56 (255)
T ss_dssp EEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 45566664 78888888888888888765434434443
No 498
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=23.06 E-value=99 Score=22.28 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=16.8
Q ss_pred HHHHHHHHHH-HHH--hcCCeEEEEecCHH
Q 046954 78 TQNIEDVLVK-LKK--KHGMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~-l~~--~~g~tvi~itH~~~ 104 (146)
..++...+.+ +.. ..|.+|++|||-..
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 186 (265)
T 1rii_A 157 VARFLPYFTDVIVGDLRVGKTVLIVAHGNS 186 (265)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeChHH
Confidence 3445555555 432 14789999999854
No 499
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=23.00 E-value=2e+02 Score=20.29 Aligned_cols=51 Identities=10% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHhcCCCEEEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHhh
Q 046954 54 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 109 (146)
Q Consensus 54 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~l~~~~g~tvi~itH~~~~~~~~ 109 (146)
-.++..+.+++++|-. ..++|.....+ ++... +.|..++...|..+++.+.
T Consensus 95 ~~~~~~Gad~V~l~~~-~~~~p~~l~~~---i~~~~-~~g~~v~~~v~t~eea~~a 145 (232)
T 3igs_A 95 DALAQAGAAIIAVDGT-ARQRPVAVEAL---LARIH-HHHLLTMADCSSVDDGLAC 145 (232)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSCHHHH---HHHHH-HTTCEEEEECCSHHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCCHHHHHHH---HHHHH-HCCCEEEEeCCCHHHHHHH
Confidence 3456789999999954 44566444444 44443 3489999999999988654
No 500
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=22.99 E-value=1e+02 Score=21.46 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEecCHH
Q 046954 78 TQNIEDVLVKLKKKH--GMTIVMVSHSIK 104 (146)
Q Consensus 78 ~~~~~~~l~~l~~~~--g~tvi~itH~~~ 104 (146)
..++.+.+.++.++. +.+|++|||..-
T Consensus 138 ~~Rv~~~l~~l~~~~~~~~~vlvVsHg~~ 166 (219)
T 2qni_A 138 QARIVEAVKAVLDRHDARQPIAFVGHGGV 166 (219)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCHHH
Confidence 355566677765432 259999999853
Done!