BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046956
         (574 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/531 (69%), Positives = 448/531 (84%), Gaps = 1/531 (0%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL+K C   + L QVH+ II+KGL QDH +++ F++LC+SL+   SY+T+VFN + +P+T
Sbjct: 30  TLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSN-FSYTTSVFNGVSSPST 88

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            LWNT +KGYS+N       ++F+R+ R +AVPDK+T+P +IKACS V  V+EG A H +
Sbjct: 89  VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGS 148

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            +R GV  DVFV TSLIDLYGK  EI CARKVFDEM ERNVVSWTAMI GYAS  DLVEA
Sbjct: 149 AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 208

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           + +FD MPE++ VSWNA+I G VK GDLRSAR++FDEMP RNVVS+TTMIDGYAK GDM 
Sbjct: 209 RKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMA 268

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SAR +FE AP+RDVVAWSALISGY QNGQP+EAVKIF +MCS+NV+PDEFI+VSLMSACS
Sbjct: 269 SARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACS 328

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+G+L+L+ WVD Y+ +S +D+ RAHVIAAL+DMNAKCG+MDRA +LFE MP RD++SYC
Sbjct: 329 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 388

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SM++GLSIHG G QAVSLF RML+EGLTPD+VAFT++LTACS  GLV++G  +FE+M+  
Sbjct: 389 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 448

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y+IVPSP+HYACMVDLLGR G LK AYELL SMPVEPHA AWGALLGACKL+ DIELGE+
Sbjct: 449 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 508

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VA++LFELEPQNAG+YVLLSNIYA A++WLDV L+R+KM+ERG+RKIPGCS
Sbjct: 509 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 559


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/558 (63%), Positives = 452/558 (81%), Gaps = 2/558 (0%)

Query: 16  CSSMLPNCSRSAPINFPKPSCLLSALT-LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH 74
           C S     +  A    PK +  L +++ L+K CK    LHQVH+H+I+KGLEQD  LV  
Sbjct: 7   CFSRFHTTTSFAKTTNPKSNVSLYSISALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQ 66

Query: 75  FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134
           FIS  +S+A  +SYST+VF+R+++P+TFLWN+L+ GY    +F+++ +++VR+ RE+  P
Sbjct: 67  FISASNSVA-HISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAP 125

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D+YTFP ++K C+    + EG A+H +++R GVDED++V TSL++LYGK   I CARKVF
Sbjct: 126 DRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVF 185

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
           D M ERNVVSWTAMIVGY+S+G+LVEAK +FDLMPER+  SWNA+IGG +K+GD++SA +
Sbjct: 186 DGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEK 245

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
            FDEMPE+NVVS+TTMIDGYAK GDM SAR+LF+ AP+RD++AWSALISGY QNGQP+EA
Sbjct: 246 AFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEA 305

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           VK F +M S+NV+PD+F+L SLM ACSQ+GNLDL+ WVDSY +R  +DL  AHV AAL+D
Sbjct: 306 VKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALID 365

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           MNAKCGNM+RA  LFE MP RD++SYCS+++GLSIHGHG QAVSLF+RML E LTPD+VA
Sbjct: 366 MNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVA 425

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           FT++LTACS  GLV++GW +FE M+  Y++VPS +HYAC+VDLL R+G LK AYEL+ S+
Sbjct: 426 FTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSV 485

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
           PV+ HA AWGALLGACKLY D EL E+VA+RL E+EP+NAG+YVLLSNIYA ADRWLDV 
Sbjct: 486 PVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVS 545

Query: 555 LVRSKMKERGLRKIPGCS 572
            VR++M ERGLRKIPGCS
Sbjct: 546 AVRNQMNERGLRKIPGCS 563


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/531 (66%), Positives = 444/531 (83%), Gaps = 5/531 (0%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           LIK CK   HLHQ H+HII KGLEQDH +++HF+S+    +T +SYST++FNR++NP+TF
Sbjct: 15  LIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSI----STSVSYSTSIFNRLLNPSTF 70

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           L+N LLK +S+NS+FI+ F++F R+ + E A+ DKYT+PL+IK CS+ L ++EG  +H +
Sbjct: 71  LYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGS 130

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            IR GV +DV+VG+SLI  YGK KEI  ARKVFDE+PERNVVSWTAM+ GYASVGDL  A
Sbjct: 131 AIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENA 190

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           K VF+ MPER+  SWNA+I GL K GDL  AR++FDEM ERNVVS+T MIDGYAKVGDM 
Sbjct: 191 KRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMA 250

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SAR+LF+ AP++DVVAWSALISGY++N QP+EAVKIF +M S NV+PDEFI+VSLMSACS
Sbjct: 251 SARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACS 310

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+GN DL+ WVDSYLS++ +D  +AHV+AAL+DM+AKCGNM++A +LF+ MP+RD++  C
Sbjct: 311 QLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCC 370

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           S+I+GLSIHG G +AV LF+RML EGL PD VAFT++LTACS  GL+EDGW FF+ M+N 
Sbjct: 371 SLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNK 430

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y++VPSP HYACMVDLL R G L++AY+LL SMP++PHA AWGALLGACKL+ D+EL E 
Sbjct: 431 YSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREE 490

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VANRL ELEP+ AGSYVLLSNIYA+A++WLDV +VR +MKERG+RKIPGCS
Sbjct: 491 VANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCS 541


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/531 (66%), Positives = 429/531 (80%), Gaps = 16/531 (3%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL+K C   + L QVH+ II+KGL QDH L++ F++LC+SL+   SY+T+VFN + +P+T
Sbjct: 30  TLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSN-FSYTTSVFNGVSSPST 88

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            LWNT +KGYS+N       ++F+R+ R +AVPDK+T+P +IKACS V  V+EG A H +
Sbjct: 89  VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGS 148

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            +R GV  DVFV TSLIDLYGK  EI CARKVFDEM ERNVVSWTAMI GYAS  DLVEA
Sbjct: 149 AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 208

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           + +FD MPE++ VSWNA+I G VK GDLRSAR++FDEMP RNVVS+TTMIDGYAK GDM 
Sbjct: 209 RKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMA 268

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SAR +FE AP+RDVVAWSALI               F      NV+PDEFI+VSLMSACS
Sbjct: 269 SARFVFEEAPERDVVAWSALI---------------FRVCAEWNVKPDEFIMVSLMSACS 313

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+G+L+L+ WVD Y+ +S +D+ RAHVIAAL+DMNAKCG+MDRA +LFE MP RD++SYC
Sbjct: 314 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 373

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SM++GLSIHG G QAVSLF RML+EGLTPD+VAFT++LTACS  GLV++G  +FE+M+  
Sbjct: 374 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 433

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y+IVPSP+HYACMVDLLGR G LK AYELL SMPVEPHA AWGALLGACKL+ DIELGE+
Sbjct: 434 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 493

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VA++LFELEPQNAG+YVLLSNIYA A++WLDV L+R+KM+ERG+RKIPGCS
Sbjct: 494 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 544


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/558 (60%), Positives = 436/558 (78%), Gaps = 3/558 (0%)

Query: 17  SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI 76
           S+ + + S S+P      +   S  TL+K CK + HL QVH+ II +GLEQDH LV  FI
Sbjct: 12  STSMRSISHSSPFRLHSAA---SITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFI 68

Query: 77  SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           S  H+L + LSY+++VF+R++ P+T LWNTL+K + Q + F    + F R+    A+PD 
Sbjct: 69  SRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDS 128

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
           +T+P VIKACS     REG ++H +  R GVD+D++VGTSLID+YGK  EI+ ARKVFD 
Sbjct: 129 FTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDG 188

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256
           M +RNVVSWTAM+VGY +VGD+VEA+ +FD MP R+  SWN+++ G VK+GDL  AR +F
Sbjct: 189 MSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVF 248

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           D MPE+NVVS+TTMIDGYAK GDM +AR LF+ + ++DVVAWSALISGY QNG P++A++
Sbjct: 249 DAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALR 308

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F +M   NV+PDEFILVSLMSA +Q+G+L+L+ WVDSY+S+  +DL + HVIAAL+DMN
Sbjct: 309 VFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMN 368

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCGNM+RA +LF+  P RDVV YCSMI+GLSIHG G +AV+LF+RML EGLTPDEVAFT
Sbjct: 369 AKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFT 428

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
           ++LTACS  GLV++G  +F++M+  Y I P P+HYACMVDLL R+GH++ AYEL+  +P 
Sbjct: 429 VILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPW 488

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           EPHA AWGALLGACKLY D ELGE+VANRLFELEP NA +YVLLS+IYA A+RW+DV LV
Sbjct: 489 EPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLV 548

Query: 557 RSKMKERGLRKIPGCSSL 574
           RSKM+ER +RKIPG S +
Sbjct: 549 RSKMRERRVRKIPGSSKI 566


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/531 (62%), Positives = 405/531 (76%), Gaps = 50/531 (9%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL+K C   + L QVH+ II+KGL QDH +++ F++LC+SL+   SY+T+VFN + +P+T
Sbjct: 78  TLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSN-FSYTTSVFNGVSSPST 136

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            LWNT +KGYS+N       ++F+R+ R +AVPDK+T+P +IKACS V  V+EG A H +
Sbjct: 137 VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGS 196

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            +R GV  DVFV TSLIDLYGK  EI CARKVFDEM ERNVVSWTAMI GYAS  DLVEA
Sbjct: 197 AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 256

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           + +FD MPE++ VSWNA+I G VK GDLRSAR++FDEMP RN                  
Sbjct: 257 RKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN------------------ 298

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
                      RDVVAWSALISG                    NV+PDEFI+VSLMSACS
Sbjct: 299 -----------RDVVAWSALISG--------------------NVKPDEFIMVSLMSACS 327

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+G+L+L+ WVD Y+ +S +D+ RAHVIAAL+DMNAKCG+MDRA +LFE MP RD++SYC
Sbjct: 328 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 387

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SM++GLSIHG G QAVSLF RML+EGLTPD+VAFT++LTACS  GLV++G  +FE+M+  
Sbjct: 388 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 447

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y+IVPSP+HYACMVDLLGR G LK AYELL SMPVEPHA AWGALLGACKL+ DIELGE+
Sbjct: 448 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 507

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VA++LFELEPQNAG+YVLLSNIYA A++WLDV L+R+KM+ERG+RKIPGCS
Sbjct: 508 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 558


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/537 (59%), Positives = 413/537 (76%), Gaps = 1/537 (0%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
           LLS  TL K CK + HL+Q+H+ II+KGLEQD +L++ FIS   S ++ LSYS++VF R+
Sbjct: 10  LLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERV 69

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREG 155
            +P T+LWN L+KGYS    F E  +I +R++R   A PD+YTFPLV+K CS+   VR G
Sbjct: 70  PSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVG 129

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
           +++H  V+R G D+DV VGTS +D YGK K++  ARKVF EMPERN VSWTA++V Y   
Sbjct: 130 SSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKS 189

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
           G+L EAK++FDLMPER+  SWNAL+ GLVK GDL +A++LFDEMP+R+++SYT+MIDGYA
Sbjct: 190 GELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYA 249

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K GDM SAR LFE A   DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI+V 
Sbjct: 250 KGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 309

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           LMSACSQ+G  +L   VDSYL +     S  +V+ AL+DMNAKCG+MDRAA+LFE MP R
Sbjct: 310 LMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQR 369

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D+VSYCSM++G++IHG G +A+ LF++M+ EG+ PDEVAFT++L  C    LVE+G R+F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           E M+  Y+I+ SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L+ +
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E+ E+VA  LFELEPQ+AGSYVLLSNIYA  DRW DV  +R KM E G+ KI G S
Sbjct: 490 TEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/527 (60%), Positives = 408/527 (77%), Gaps = 4/527 (0%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
           CK + HL+Q+H+ II+KGLEQD +L++ FIS   S ++ LSYS++VF R+  P T+LWN 
Sbjct: 20  CKSEIHLNQIHARIIRKGLEQDQNLISIFIS---SSSSSLSYSSSVFERVPYPGTYLWNH 76

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
           L+KGYS    F E  ++ +R++R   A PD+YTFPLV+K CS+    R G+ +H  V+R 
Sbjct: 77  LIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRI 136

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G D+DV +GTS +D YGK K++  ARKVF EMPERNVVSWTA+IV Y   G+L EAK +F
Sbjct: 137 GFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMF 196

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           DLMPER+  +WNAL+ GLVK GDL +AR+LFDEMP+R+++SYT+MIDGYAK GDM SAR 
Sbjct: 197 DLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSARD 256

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LFE A   DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI+V LMSACSQ+G 
Sbjct: 257 LFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGC 316

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            +L   VDSYL +S    S  +VI AL+DMNAKCG+MDRAA+LFE MP RD+VSYCSM++
Sbjct: 317 FELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMME 376

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G++IHG G +AV LF++M+ EG+ PDEVAFT++L  CS   LVE+G R+FE M+  Y+I+
Sbjct: 377 GMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSIL 436

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
            SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L+ + E+ E+VA +
Sbjct: 437 ASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARQ 496

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LFELEPQ+AGSYVLLSNIYA  DRW D+  +R KM E G++KI G S
Sbjct: 497 LFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRS 543


>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
          Length = 622

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/541 (49%), Positives = 374/541 (69%), Gaps = 7/541 (1%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP---LSYS 89
           +PS  L+  TL+ +C     L Q+H+ II  GL   H+L+A F + C +L  P    S+ 
Sbjct: 80  RPSVALA--TLLGRCCTVRCLAQLHARIILLGLHNHHALLARFTTACDALECPSVAASFI 137

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
            A+ +    P   L N +L   ++++      T F  L+R+ A+PD ++FP +++AC+ V
Sbjct: 138 AALTDSHAAP-LRLRNAVLASLARHAPLHAALTEF-NLLRQAALPDSFSFPCLLRACARV 195

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +  G A+HAA IR GV  D+F+ T+LI  YG+      AR +F ++   + VSWTA+I
Sbjct: 196 SCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARALFYQIDIPSEVSWTAII 255

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
           V Y + G +++A+ +FD MP+R+ V WN ++ G VK GDL  AR+LFDEMPER   + T+
Sbjct: 256 VAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTS 315

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I GYAK G+M +AR LF+   DRDV +WSA+ISGYAQNG P EA++ F +   + + PD
Sbjct: 316 LIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPD 375

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           E ++V LMSACSQ+GN+ L++W++ Y+++  +D++ AHV+A LV+MNAKCGN++RA  LF
Sbjct: 376 ELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLF 435

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E+MP RDV SYCS+++G  +HG   +AV LF RML EGLTPD   FTIVLTAC H GLVE
Sbjct: 436 ESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVE 495

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G +FF+ M+NVY +VPS EHYAC+V+LLGR G L+ AY L+ SMP +PH  AWGALLG 
Sbjct: 496 EGKKFFDIMKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAWGALLGG 555

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CKL+ +IELG++ A +LFE+EP NAG+YV LSN+YA  DRW DV  VR++M  + + KI 
Sbjct: 556 CKLHCNIELGKIAAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIA 615

Query: 570 G 570
           G
Sbjct: 616 G 616


>gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 548

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/532 (50%), Positives = 374/532 (70%), Gaps = 6/532 (1%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL---SYSTAVFNRIVN 98
           TL+ +C+    L Q+H+ I++ GL   HSL+A F + C +LA+P    S+ +A+ +  V 
Sbjct: 14  TLLGRCRTARCLAQLHARIVRLGLHNHHSLLARFAAACDALASPSVADSFLSALPSHAVP 73

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            +  + NT+L   S++S        F  +IR  A PD ++FP +++AC+HV     GTA+
Sbjct: 74  LS--IRNTVLASLSRHSSLRAALAQF-NMIRRTAGPDAFSFPPLLRACAHVPCTSTGTAL 130

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HAA IR G+D D+FV T+LI  YG+ +    AR +FD M   + VSWTA+I+ Y + G++
Sbjct: 131 HAAAIRLGLDADLFVRTALIQFYGRCRAAGAARALFDSMTIPSDVSWTAIIIVYVNSGEI 190

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           V A+ +FD +P R+ V WNA++ G VK GDL SA +LF+EMP +   ++T++I GYAK G
Sbjct: 191 VAARELFDRIPHRNLVHWNAMVDGYVKCGDLESAGRLFEEMPRKTAAAHTSLIGGYAKAG 250

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           +M  A+ LF+   DRDV AWSA+ISGYAQNG P EA +IF++   +++ PDE ++V+LM+
Sbjct: 251 NMEGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIFNEFHKQDICPDEPVIVALMA 310

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           ACSQ+GN+ L+ W++ Y+    +D++ AHV+A L++MNAKCGNM+RA  LFE+MP RDV 
Sbjct: 311 ACSQLGNIMLARWIEGYIGSYSIDINNAHVLAGLINMNAKCGNMERATVLFESMPVRDVF 370

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           SYCSM++G  +HG   +AV LF RML EGL+PD   FT+VLTAC+H GLVE+  ++F  M
Sbjct: 371 SYCSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVVLTACNHAGLVEEAKKYFGMM 430

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           +NVY+IVPS +HYAC+V LLGR G L+ AYE++ SMP EPHA +WGALLG C L  D EL
Sbjct: 431 KNVYSIVPSGDHYACLVSLLGRFGILRDAYEIIKSMPGEPHAGSWGALLGGCILQCDTEL 490

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           G++ A +LFE+EP NAG+YV LSNIYA  DRW DV  +R++M  +GL KI G
Sbjct: 491 GKIAAKKLFEIEPDNAGNYVTLSNIYANIDRWTDVSKIRAEMSRKGLTKIAG 542


>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
 gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
          Length = 545

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/531 (48%), Positives = 363/531 (68%), Gaps = 3/531 (0%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL+ +C+    L Q+H+ I++ GL   H+L+A F + C +L+ P   S A     V    
Sbjct: 14  TLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDALSCP---SVAASLLSVAVPV 70

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            L N +L   ++++   +    F  L    + PD ++FP ++ AC+   S+  G ++HAA
Sbjct: 71  RLRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAA 130

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            IR GVD D+FV T+LI  YG+    + AR +FD +   + VSWTA++  Y + GD++ A
Sbjct: 131 AIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTA 190

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           + +FD +P R+ V WNA++ G VK GDL  AR+LFDEMPER   +YT++I GY   G+M 
Sbjct: 191 RELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMG 250

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           +AR+LF+   DRD+ AWS +ISG AQNG P EA++IF++   + + PDE ++V LMSACS
Sbjct: 251 AARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACS 310

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+GN+ L+ W++ Y+    +D++  HV+A L++MNAKCGNM+RA  LFE+M  RDV SYC
Sbjct: 311 QLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYC 370

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SM++G  +HG   +AV LF +ML EG+TPD  AFT+VLTACSH GLVE+G R+F+ M+N 
Sbjct: 371 SMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNE 430

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y IVPS +HYAC+V LLGR G L+ AYEL+ SMP EPH  AWGALLG CK + DIELG++
Sbjct: 431 YMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKI 490

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            A +LFE+EP+NAG+YV LSNIYA  DRW +V   R++M  RG+ KI GC+
Sbjct: 491 AAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCT 541


>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
 gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
          Length = 545

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/531 (48%), Positives = 365/531 (68%), Gaps = 3/531 (0%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL+ +C+    L Q+H+ I++ GL   H+L+A F + C +L+ P   ++ +   +  P  
Sbjct: 14  TLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAACDTLSCPSVVASLL--SVAVP-V 70

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            L N +L   ++++   +    F  L    + PD ++FP ++ AC+   S+  G ++HAA
Sbjct: 71  RLRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAA 130

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            IR GVD D+FV T+LI  YG+    + AR +FD +   + VSWTA++  Y + GD++ A
Sbjct: 131 AIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTA 190

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           + +FD +P R+ V WNA++ G VK GDL  AR+LFDEMPER   +YT++I GY   G+M 
Sbjct: 191 RELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMG 250

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           +AR+LF+   DRD+ AWS +ISG AQNG P EA++IF++   + + PDE ++V LMSACS
Sbjct: 251 AARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACS 310

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+GN+ L+ W++ Y+    +D++  HV+A L++MNAKCGNM+RA  LFE+M  RDV SYC
Sbjct: 311 QLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYC 370

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SM++G  +HG   +AV LF +ML EG+TPD  AFT+VLTACSH GLVE+G R+F+ M+N 
Sbjct: 371 SMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNE 430

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y IVPS +HYAC+V LLGR G L+ AYEL+ SMP EPH  AWGALLG CK + DIELG++
Sbjct: 431 YMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKI 490

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            A +LFE+EP+NAG+YV LSNIYA  DRW +V   R++M  RG+ KI GC+
Sbjct: 491 AAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCT 541


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 357/571 (62%), Gaps = 13/571 (2%)

Query: 6   EPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLL---SALTLIKKCKLQTHLHQVHSHIIK 62
           +P  P   KSCS+ +   +       PKP   L     ++L++ CK    +HQ+ + II 
Sbjct: 11  KPFDPPGGKSCSTEIDYLA-------PKPPHRLLEERFISLLQSCKTSKQVHQIQAQIIA 63

Query: 63  KGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT 122
            G + +  +    +++C +L   ++Y+  +F++I +PN  LWN++ +GY+Q+  + EV  
Sbjct: 64  NGFQYNEYITPKLVTICATLKR-MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVF 122

Query: 123 IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
           +F ++   +  P+ +TFP+V+K+C  + ++ EG  +H  +I+ G   + FVGT+LID+Y 
Sbjct: 123 LFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYS 182

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
               +  A K+F EM ERNVV+WT+MI GY    DLV A+ +FDL PER  V WN ++ G
Sbjct: 183 AGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSG 242

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
            ++ GD+  AR+LF EMP R+V+ + T++ GYA  G++ +   LFE  P+R++ +W+ALI
Sbjct: 243 YIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALI 302

Query: 303 SGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
            GYA NG   E +  F  M S+ +V P++  LV+++SAC+++G LDL  WV  Y   S +
Sbjct: 303 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL 362

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
                +V  AL+DM AKCG ++ A  +F  M  +D++S+ ++I GL++H  G  A++LF 
Sbjct: 363 K-GNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFF 421

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
           +M + G  PD + F  +L AC+H+GLVEDG+ +F++M + Y I+P  EHY CMVD+L R 
Sbjct: 422 QMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARA 481

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541
           G L+ A   +  MPVE     W  LLGAC++Y ++EL EL   RL ELEP+N  +YV+LS
Sbjct: 482 GRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLS 541

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           NIY  A RW DV  ++  M++ G +K+PGCS
Sbjct: 542 NIYGDAGRWEDVARLKVAMRDTGFKKLPGCS 572


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/533 (42%), Positives = 337/533 (63%), Gaps = 3/533 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           +TL++ CK    LHQ+ + I+  GLE +  +  +FI+ C S    + ++  +F++I  PN
Sbjct: 16  ITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTC-SRFKRIHHARKLFDKIPQPN 74

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           T  WN + +GY QN    +   +F  L R   +P+ +TFP++IK+C  +  VREG  +H 
Sbjct: 75  TATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHC 134

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
              + G   + FV TSLID+Y K+  +  A KVF EM ERNVV WTA+I GY   GD+V 
Sbjct: 135 CATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVS 194

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
            + +FDL PER  V W+ LI G ++  ++ +AR+LFD+MP R+ +S+  M++GYA  G++
Sbjct: 195 GRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEV 254

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSA 339
                +F+  P+R+V +W+ LI GY +NG   E ++ F  M    +V P++F LV+++SA
Sbjct: 255 EMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSA 314

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           CS++G LD+  WV  Y + S        V   L+DM AKCG ++ A  +F  +  +D++S
Sbjct: 315 CSRLGALDMGKWVHVY-AESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIIS 373

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + ++I GL+IHGH   A+ +FDRM SEG  PD V F  +L+AC+H+GLV+DG+ +F++M 
Sbjct: 374 WNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMV 433

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           + Y+IVP  EHY CMVDLLGR G L  A   +  MP+EP A  W ALLGAC+LY ++E+ 
Sbjct: 434 DHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIA 493

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EL   RL ELEP N  ++V++SNIY    R  DV  ++  M++ G RK+PGCS
Sbjct: 494 ELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCS 546


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/575 (41%), Positives = 352/575 (61%), Gaps = 45/575 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNPN 100
           LI KC  + HL Q+H+H+++ GL  D        + C +L++P  L Y+  VF++I  PN
Sbjct: 36  LIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTAC-ALSSPSSLDYACKVFDQIPRPN 94

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            + WNTL++ ++ + + I+   +F++++ E +  P+ YTFP VIKA + V S+  G AIH
Sbjct: 95  LYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIH 154

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V++     D+F+  SLI  Y    ++  A  VF ++ E+++VSW +MI G+   G   
Sbjct: 155 GMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPE 214

Query: 220 EAKTVFDLM------PERSNV----------------SW-----------------NALI 240
           EA  +F  M      P R  +                 W                 NA++
Sbjct: 215 EALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAML 274

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
              VK G L  AR+LFD+M E+++VS+TTMIDGYAKVGD  +AR +F+  P  D+ AW+A
Sbjct: 275 DMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNA 334

Query: 301 LISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           LIS Y QNG+P EA+ IF ++  +KN +P+E  L S ++AC+Q+G +DL  W+  Y+ + 
Sbjct: 335 LISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ 394

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + L+  H+  +L+DM +KCG++++A E+F ++  RDV  + +MI GL++HGHGR A+ L
Sbjct: 395 GIKLN-FHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDL 453

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M    + P+ V FT +L ACSH GLV++G  FF  M+ VY +VP  +HYACMVD+LG
Sbjct: 454 FSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILG 513

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G L+ A EL+  MP+ P AS WGALLGAC++Y ++EL E+  +RL E +  N G+YVL
Sbjct: 514 RAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVL 573

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LSNIYA A +W  V  +R  MK  GL K PGCSS+
Sbjct: 574 LSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSI 608


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/530 (40%), Positives = 340/530 (64%), Gaps = 3/530 (0%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           ++ CK    +HQ+ + II  G + +  +    +++C +L   ++Y+  +F++I +PN  L
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKR-MTYARQLFDQIPDPNIAL 166

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN++ +GY+Q+  + EV  +F ++   +  P+ +TFP+V+K+C  + ++ EG  +H  +I
Sbjct: 167 WNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI 226

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G   + FVGT+LID+Y     +  A K+F EM ERNVV+WT+MI GY    DLV A+ 
Sbjct: 227 KCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARR 286

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
           +FDL PER  V WN ++ G ++ GD+  AR+LF EMP R+V+ + T++ GYA  G++ + 
Sbjct: 287 LFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEAL 346

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQ 342
             LFE  P+R++ +W+ALI GYA NG   E +  F  M S+ +V P++  LV+++SAC++
Sbjct: 347 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 406

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G LDL  WV  Y   S +     +V  AL+DM AKCG ++ A  +F  M  +D++S+ +
Sbjct: 407 LGALDLGKWVHVYAESSGLK-GNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNT 465

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I GL++H  G  A++LF +M + G  PD + F  +L AC+H+GLVEDG+ +F++M + Y
Sbjct: 466 LIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDY 525

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I+P  EHY CMVD+L R G L+ A   +  MPVE     W  LLGAC++Y ++EL EL 
Sbjct: 526 LIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELA 585

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             RL ELEP+N  +YV+LSNIY  A RW DV  ++  M++ G +K+PGCS
Sbjct: 586 LQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCS 635


>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 359

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/330 (65%), Positives = 270/330 (81%)

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
           E + PDKYT+P +I+  S    ++EG  +H + IR GV +DV+VG+SL+D YGK KEI  
Sbjct: 6   EHSWPDKYTYPSLIRVFSSEFRLKEGGIVHGSAIRCGVSDDVYVGSSLVDFYGKCKEILS 65

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           ARK+FDEM ++NVVSWTAM+VGY +VGDL  A+ +FD MPER+  SWNA+I G VK GDL
Sbjct: 66  ARKMFDEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWVKAGDL 125

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             AR++FDEMPERNVVS+T MIDGYAK GDMT+AR LFE AP RDV+AWSALISGYAQNG
Sbjct: 126 LLARKVFDEMPERNVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNG 185

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           QP+EAV+IF +M SKNV+PDE+I+VSLMSACSQ+G+LDL+ W D YLS+S +D+ + HVI
Sbjct: 186 QPNEAVRIFLEMESKNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSSIDIGQTHVI 245

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
           AAL+DMNAKCGNM+RA +LFE MP RD+++YCSMI+GLSIHG   QAV LF+RML+E L 
Sbjct: 246 AALIDMNAKCGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLI 305

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           PDE AFT+VLTACS  GLV++G  +FE M+
Sbjct: 306 PDEAAFTVVLTACSRGGLVDEGRHYFETMK 335



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 42/260 (16%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           ++L+    K  ++ SAR++FDEM ++NVVS+T M+ GY  VGD+ +A  LF+  P+R++ 
Sbjct: 51  SSLVDFYGKCKEILSARKMFDEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLK 110

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+A+I G+ + G    A K+F +M  +NV       VS                     
Sbjct: 111 SWNAMIDGWVKAGDLLLARKVFDEMPERNV-------VSF-------------------- 143

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
                          ++D  AK G+M  A +LFE  P RDV+++ ++I G + +G   +A
Sbjct: 144 -------------TVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQPNEA 190

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-ACMV 475
           V +F  M S+ + PDE     +++ACS +G + D  R+ +   +  +I     H  A ++
Sbjct: 191 VRIFLEMESKNVKPDEYIMVSLMSACSQLGSL-DLARWADCYLSKSSIDIGQTHVIAALI 249

Query: 476 DLLGRTGHLKSAYELLNSMP 495
           D+  + G+++ A +L   MP
Sbjct: 250 DMNAKCGNMERAKKLFEEMP 269



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  ++ +  +F R    +   W+ L+ GY+QN +  E   IF+ +  +   PD+Y  
Sbjct: 150 YAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIM 209

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
             ++ ACS + S+         + +  +D     V  +LID+  K   +  A+K+F+EMP
Sbjct: 210 VSLMSACSQLGSLDLARWADCYLSKSSIDIGQTHVIAALIDMNAKCGNMERAKKLFEEMP 269

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQ 254
           +R+++++ +MI G +  G   +A  +F+ M   S      ++  ++    + G +   R 
Sbjct: 270 KRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPDEAAFTVVLTACSRGGLVDEGRH 329

Query: 255 LFDEMPERNVVSY 267
            F+ M    V S+
Sbjct: 330 YFETMKTSEVCSF 342


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 346/578 (59%), Gaps = 42/578 (7%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH--FISLCHSLATPLSYST 90
           +P CL S L+ I     Q    QVH+ I+  GL     ++A    IS  +  AT   Y  
Sbjct: 2   EPRCLFSKLSTISLSVKQAK--QVHALILIHGLSHLEPILARQILISASNYSATVAQYVH 59

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           +V +   +P++F W   ++  +Q+ +F E F ++V++ R    P  +     +KAC+ + 
Sbjct: 60  SVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIA 119

Query: 151 SVREGTAIHAAVIRWGVD---EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
               G +IH  V ++G     + ++V T+L+D Y K  ++  ARK+FDEM ERNVVSW +
Sbjct: 120 YRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNS 179

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+ GY   GDLV A+ VFD +P++  +SWN++I G  + GD+  A  LF +MPERN  S+
Sbjct: 180 MLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASW 239

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY---------------------- 305
             MI G+ + GD+ SARS F+A P ++ V+W  +ISGY                      
Sbjct: 240 NAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLL 299

Query: 306 ---------AQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
                    AQN +P+EA+ +F++M +   NVQPDE  L S++SACSQ+G+L    W++S
Sbjct: 300 LFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIES 359

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ R  +++   H+  AL+D+ AKCG++D+A ELF  +  +D+V+Y +MI G  I+G   
Sbjct: 360 YMRRLGIEMD-GHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAI 418

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            A+ LFD M+   + P+ + F  +LTA +H GLVE+G+R F +M+  Y +VPS +HY  M
Sbjct: 419 DAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIM 477

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDL GR G L+ A EL+ SMP++PHA  WGALL AC+L++++E GE+ A   FELEP   
Sbjct: 478 VDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTT 537

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G   LLSNIYA+ +RW DV  +R   KE+G  KIPGCS
Sbjct: 538 GYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCS 575


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 336/575 (58%), Gaps = 40/575 (6%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVN 98
           +LTL+  CK   +L Q+HS IIK GL      ++  I  C  S    LSY+  +F  I  
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN F+WNT+++G S +S  +     +VR++     P+ YTFP ++K+C+ V + +EG  I
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQI 154

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V++ G++ D FV TSLI++Y +  E+  A  VF +   R+ VS+TA+I GY   G L
Sbjct: 155 HGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCL 214

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS------------ 266
            +A+ +F+ +P R  VSWNA+I G  + G    A   F EM   NV              
Sbjct: 215 DDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSAC 274

Query: 267 ---------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
                                         +ID Y+K GD+  AR LFE   ++D+++W+
Sbjct: 275 AQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWN 334

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            +I GY+      EA+ +F  M   NV+P++   VS++ AC+ +G LDL  W+ +Y+ + 
Sbjct: 335 VMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK 394

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + L+   +  +L+DM AKCGN++ A ++F  M  + + S+ +MI GL++HGH   A+ L
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M  EG  PD++ F  VL+ACSH GLVE G + F +M   Y I P  +HY CM+DLLG
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G    A  L+ +M ++P  + WG+LLGAC+++ ++ELGE  A  LFELEP+N G+YVL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LSNIYATA RW DV  +R+K+ ++G++K+PGCSS+
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSI 609


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/577 (40%), Positives = 349/577 (60%), Gaps = 45/577 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP-LSYSTAVFNRIVNP 99
           L+LI +C     L Q+H+ +++ GL  D    +  I+       P L Y+  VF++I +P
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAI 158
           N + WNTL++ Y+ +S   +   IF+R++ +    PDK+TFP +IKA S +  +  G A 
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  VI+  +  DVF+  SLI  Y K  E+    +VF  +P R+VVSW +MI  +   G  
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCP 218

Query: 219 VEAKTVFDLMPERSNVS-----------------------W-----------------NA 238
            EA  +F  M E  NV                        W                 NA
Sbjct: 219 EEALELFQEM-ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNA 277

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           ++    K G +  A++LFD+MPE+++VS+TTM+ GYAK+G+  +A+ +F+A P++D+ AW
Sbjct: 278 MLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAW 337

Query: 299 SALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           +ALIS Y Q G+P EA+++F ++  SK  +PDE  LVS +SAC+Q+G +DL  W+  Y+ 
Sbjct: 338 NALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIK 397

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +  M L+  H+  +L+DM  KCG++ +A  +F ++  +DV  + +MI GL++HGHG+ A+
Sbjct: 398 KQGMKLN-CHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 456

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           +LF +M  + + P+ V FT +L ACSHVGLVE+G  FF  M+ VY ++P  +HYACMVD+
Sbjct: 457 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDI 516

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR G L+ A EL+  MP+ P AS WGALLGAC ++ ++ L E   ++L ELEP N G+Y
Sbjct: 517 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 576

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VLLSNIYA A +W  V  +R  M++ GL+K PGCSS+
Sbjct: 577 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 613


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/482 (43%), Positives = 320/482 (66%), Gaps = 2/482 (0%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF++I  PN  +WN + +GYSQN    +V  +F ++   + +P+ +TFP+++K+C  + +
Sbjct: 7   VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           ++EG  +H  VI+ G   + FV T+LID+Y     I  A +VF EM ERNV++WTAMI G
Sbjct: 67  LKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMING 126

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y +  DLV A+ +FDL PER  V WN +I G ++  D+  AR+LFD+MP ++V+S+ T++
Sbjct: 127 YITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVL 186

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDE 330
           +GYA  GD+ +   LFE  P+R+V +W+ALI GY +NG   E +  F  M     V P++
Sbjct: 187 NGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPND 246

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             LV+++SAC+++G LDL  WV  Y + SH      +V  AL+DM AKCG ++ A ++F+
Sbjct: 247 ATLVNVLSACARLGALDLGKWVHVY-AESHGYKGNVYVRNALMDMYAKCGVVETALDVFK 305

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
           +M N+D++S+ ++I GL++HGHG  A++LF  M   G  PD + F  +L AC+H+GLVED
Sbjct: 306 SMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVED 365

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G+ +F++M + Y+IVP  EHY C+VDLLGR G L  A + +  MP+E  A  W ALLGAC
Sbjct: 366 GFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGAC 425

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           ++Y ++EL EL   +L E EP+N  +YV+LSNIY    RW DV  ++  M++ G +K+PG
Sbjct: 426 RVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPG 485

Query: 571 CS 572
           CS
Sbjct: 486 CS 487



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 162/365 (44%), Gaps = 82/365 (22%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPE--------RSNVS 235
           A KVFD++PE N   W AM  GY+      +   +F      D+MP         +S V 
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63

Query: 236 WNALIGG---------------------LVKI----GDLRSARQLFDEMPERNVVSYTTM 270
            NAL  G                     L+ +    G + +A ++F EM ERNV+++T M
Sbjct: 64  INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I+GY    D+ +AR LF+ AP+RD+V W+ +ISGY +      A ++F  M +K+V    
Sbjct: 124 INGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWN 183

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
            +L                   + Y S                      G++     LFE
Sbjct: 184 TVL-------------------NGYASN---------------------GDVMACERLFE 203

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVE 449
            MP R+V S+ ++I G + +G   + +S F RML +G + P++     VL+AC+ +G ++
Sbjct: 204 EMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALD 263

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G ++       +    +      ++D+  + G +++A ++  SM  +   S W  ++G 
Sbjct: 264 LG-KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLIS-WNTIIGG 321

Query: 510 CKLYS 514
             ++ 
Sbjct: 322 LAVHG 326



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M +A  +F+  P+ +   W+A+  GY+QN    + + +F  M   +V P+ F    ++ +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C ++  L     V  ++ +S    +   V   L+DM A  G +  A  +F  M  R+V++
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFR-ANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIA 119

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP--DEVAFTIVLTACSHVGLVEDGWRFFEA 457
           + +MI G         A  LFD      L P  D V +  +++       V      F+ 
Sbjct: 120 WTAMINGYITCCDLVTARRLFD------LAPERDIVLWNTMISGYIEAKDVIRARELFDK 173

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           M N          +  +++     G + +   L   MP E +  +W AL+G 
Sbjct: 174 MPN-----KDVMSWNTVLNGYASNGDVMACERLFEEMP-ERNVFSWNALIGG 219


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/577 (41%), Positives = 349/577 (60%), Gaps = 45/577 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD-HSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+ I KC     L +VH+ +++ GL  D  S    F +   S  + L Y+  +F++I  P
Sbjct: 29  LSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQP 88

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAI 158
           N + WNTL++ Y+ +S   + F IF+ L+ + E +P+K+TFP VIKA S + + R GTA+
Sbjct: 89  NLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAV 148

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   I+     D+++  SL+  YG   ++S A ++F  +  ++VVSW +MI  +A  G+ 
Sbjct: 149 HGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQ-GNC 207

Query: 219 VEAKTVFDLMPERSNV-----------------------SW-----------------NA 238
            E      L  ER NV                        W                 NA
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNA 267

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           ++    K G +  A++LFDEMPER+V S+T M+DGYAK+GD  +AR +F A P +++ AW
Sbjct: 268 MLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAW 327

Query: 299 SALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           + LIS Y QNG+P EA+ IF+++  SK  +PDE  LVS +SAC+Q+G +DL  W+  Y+ 
Sbjct: 328 NVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIK 387

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           R  + L+  H+I++LVDM AKCG++++A E+F ++  RDV  + +MI GL +HG G+ A+
Sbjct: 388 REGIVLN-CHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAI 446

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LF  M    + P+ V FT VL ACSH GLV++G  FF  M+ VY +VP  +HYACMVD+
Sbjct: 447 DLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDI 506

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR G L+ A EL+N M   P AS WGALLGAC L+ ++ELGEL +++L +LEP+N G+ 
Sbjct: 507 LGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAI 566

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VLLSNIYA   RW  V  +R  M++  L+K PGCSS+
Sbjct: 567 VLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSI 603


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 349/578 (60%), Gaps = 42/578 (7%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS--LATPLSYST 90
           +P CL S L+ I     Q    QVH+ I+  GL     ++A  I L  S   AT   Y  
Sbjct: 2   EPRCLFSKLSTISLSVKQAK--QVHALILIHGLSHLEPILARQILLSASNYSATVAQYVH 59

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           +V +   +P++F W   ++  +Q+ +F E F ++V++ R    P  +     +KAC+ + 
Sbjct: 60  SVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIA 119

Query: 151 SVREGTAIHAAVIRWGVD---EDVFVGTSLIDLYGKRKEISCARKVFDEM---------- 197
               G +IH  V ++G     + ++V T+L+D Y K  ++  ARK+FDEM          
Sbjct: 120 YRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNS 179

Query: 198 ---------------------PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
                                P+++V+SW +MI GYA  GD+ +A ++F  MPER+  SW
Sbjct: 180 MLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASW 239

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA+I G V+ GD+ SAR  FD MP+RN VS+ TMI GY+K GD+ SA  LF+    +D++
Sbjct: 240 NAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLL 299

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            ++A+I+ YAQN +P EA+K+F++M +   NVQPDE  L S++SACSQ+G+L    W++S
Sbjct: 300 LFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIES 359

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ R  +++   H+  AL+D+ AKCG++D+A ELF  +  +D+V+Y +MI G  I+G   
Sbjct: 360 YMRRLGIEMD-GHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAI 418

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            A+ LFD M+   + P+ + F  +LTA +H GLVE+G+  F +M+  Y +VPS +HY  M
Sbjct: 419 DAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKK-YNLVPSVDHYGIM 477

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDL GR G L+ A EL+ SMP++PHA  WGALL AC+L++++E GE+ A   FELEP   
Sbjct: 478 VDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTT 537

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G   LLSNIYA+ +RW DV  +R   KE+G  KIPGCS
Sbjct: 538 GYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCS 575


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 344/547 (62%), Gaps = 15/547 (2%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++L++ C     LHQ+ + I+  GLE +  +   FI+ C  L   +  +  VF++   PN
Sbjct: 26  ISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGG-IRRARRVFDKTAQPN 84

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
              WN + +GY+Q +  ++V  +F R+ R  A P+ +TFP+V+K+C+   + +EG  +H 
Sbjct: 85  GATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHC 144

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEI--SCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            V + G   + FVG +LI +Y  R  +  + A KVF EM ++NV +WTA++  + +  D+
Sbjct: 145 VVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDM 204

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           V A+ +FDL P+R  V WN ++ G +++GD+ +AR+LFD MP+R+V+S+ T++ GYA  G
Sbjct: 205 VSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNG 264

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-----------CSKNVQ 327
           ++ S   LFE  P R+V +W+ LI GY +NG   EA++ F  M               V 
Sbjct: 265 EVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVV 324

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           P+++ +V++++ACS++G+L++  WV  Y + S        V  AL+DM AKCG +++A +
Sbjct: 325 PNDYTVVAVLTACSRLGDLEMGKWVHVY-AESIGYKGNLFVGNALIDMYAKCGVIEKALD 383

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ +  +D++++ ++I GL++HGH   A+SLF+RM   G  PD V F  +L+AC+H+GL
Sbjct: 384 VFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGL 443

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V +G   F++M + Y+IVP  EHY CMVDLLGR G +  A +++  MP+EP A  W ALL
Sbjct: 444 VRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALL 503

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GAC++Y ++E+ EL   RL ELEP N G++V++SNIY    R  DV  ++  M++ G RK
Sbjct: 504 GACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRK 563

Query: 568 IPGCSSL 574
           +PGCS +
Sbjct: 564 VPGCSVI 570


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/555 (40%), Positives = 345/555 (62%), Gaps = 8/555 (1%)

Query: 26  SAPINFP----KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           S PI  P    K   L   ++ + +C     + Q+H+ ++K  L ++ S V   +    S
Sbjct: 2   SVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRE-SFVGQKLIAAFS 60

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
           L   ++ +  VFN+I +P+  L+NTL++ + +NS  +  F++F  +       D +T+P 
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPF 120

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--RKEISCARKVFDEMPE 199
           ++KACS  + VR    IHA V + G   D+FV  SLID Y K     ++ ARKVF+ M E
Sbjct: 121 LLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAE 180

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           R+ VSW +MI G   VG+L EA+ +FD MPER  VSWN ++ G VK G++ +A +LF++M
Sbjct: 181 RDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKM 240

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P RNVVS++TM+ GY+K GDM  AR LF+  P +++V W+ +ISGYA+ G   +A+ +++
Sbjct: 241 PARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYN 300

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M    ++ D+  ++S++SAC+  G L L   V + + R+    S   V  AL+DM AKC
Sbjct: 301 QMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTP-VSNALIDMYAKC 359

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G+++ A  +F  M  +DVVS+ ++I+GL++HGHG +A+ LF RM  EG  PD+V F  VL
Sbjct: 360 GSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVL 419

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
            AC+H G V++G  +F AM+  Y + P  EHY CMVDLLGR G LK A+ L++SMP+EP+
Sbjct: 420 CACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPN 479

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A  WG LLGAC+++S   L E V +RL + E  ++G+  +LSNIYA A  W +   +R +
Sbjct: 480 AIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLR 539

Query: 560 MKERGLRKIPGCSSL 574
           MK   ++K  G SS+
Sbjct: 540 MKSTSIQKPSGGSSI 554


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/533 (40%), Positives = 335/533 (62%), Gaps = 3/533 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++L++ CK    L +V + II  G + +  +  + ++    L   ++++  +F+   +P 
Sbjct: 29  ISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGL-KQMAHARHLFDHFPDPK 87

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             LWN + +GY  N+ + EV  +F ++   +  P+ +TFPLV+K+C+ + +  EG  IH 
Sbjct: 88  VELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHC 147

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            VI+ G++ + FV T+LID+Y   + I  A K+F  M ERN+V+WT+MI GY     +  
Sbjct: 148 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL 207

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A+ +FDL PER  V WN ++ G ++IGD+++AR+LFD MP R+ +S+ TM++GYA  GD+
Sbjct: 208 ARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDV 267

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSA 339
            +   LFE  P+R+V +W+ LI GYA NG   E ++ F  M     V P++  LV+++SA
Sbjct: 268 EACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSA 327

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+++G LDL  WV  Y +      S  +V  AL+DM +KCG ++ A E+FE+M  +D+++
Sbjct: 328 CARLGALDLGKWVHVYAATIGFKGS-IYVGNALIDMYSKCGLIENAMEVFESMDLKDLIT 386

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + SMI GL+ HG G  A++LF +M   G  PD + F  VL +C+H+GLVE+G  +F +M 
Sbjct: 387 WNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMV 446

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           N Y+I P  EHY CMVDL GR G L  A E +  MP+E  A  W ALLGAC++Y +I+L 
Sbjct: 447 NEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLA 506

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EL   +L  LEP+N  +YVLLSNIY    RW DV  ++  M++ G +K+PGCS
Sbjct: 507 ELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCS 559


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/533 (40%), Positives = 335/533 (62%), Gaps = 3/533 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++L++ CK    L +V + II  G + +  +  + ++    L   ++++  +F+   +P 
Sbjct: 71  ISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQ-MAHARHLFDHFPDPK 129

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             LWN + +GY  N+ + EV  +F ++   +  P+ +TFPLV+K+C+ + +  EG  IH 
Sbjct: 130 VELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHC 189

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            VI+ G++ + FV T+LID+Y   + I  A K+F  M ERN+V+WT+MI GY     +  
Sbjct: 190 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL 249

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A+ +FDL PER  V WN ++ G ++IGD+++AR+LFD MP R+ +S+ TM++GYA  GD+
Sbjct: 250 ARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDV 309

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSA 339
            +   LFE  P+R+V +W+ LI GYA NG   E ++ F  M     V P++  LV+++SA
Sbjct: 310 EACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSA 369

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+++G LDL  WV  Y +      S  +V  AL+DM +KCG ++ A E+FE+M  +D+++
Sbjct: 370 CARLGALDLGKWVHVYAATIGFKGS-IYVGNALIDMYSKCGLIENAMEVFESMDLKDLIT 428

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + SMI GL+ HG G  A++LF +M   G  PD + F  VL +C+H+GLVE+G  +F +M 
Sbjct: 429 WNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMV 488

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           N Y+I P  EHY CMVDL GR G L  A E +  MP+E  A  W ALLGAC++Y +I+L 
Sbjct: 489 NEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLA 548

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EL   +L  LEP+N  +YVLLSNIY    RW DV  ++  M++ G +K+PGCS
Sbjct: 549 ELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCS 601


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 329/568 (57%), Gaps = 40/568 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVN 98
           +LTL+  CK   +L Q+HS IIK GL      ++  I  C  S    LSY+  +F  I  
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN F+WNT+++G S +S  +     +VR++     P+ YTFP ++K+C+ V + +EG  I
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQI 154

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V++ G++ D FV TSLI++Y +  E+  A  VF +   R+ VS+TA+I GY   G L
Sbjct: 155 HGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCL 214

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS------------ 266
            +A+ +F+ +P R  VSWNA+I G  + G    A   F EM   NV              
Sbjct: 215 DDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSAC 274

Query: 267 ---------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
                                         +ID Y+K GD+  AR LFE   ++D+++W+
Sbjct: 275 AQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWN 334

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            +I GY+      EA+ +F  M   NV+P++   VS++ AC+ +G LDL  W+ +Y+ + 
Sbjct: 335 VMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKK 394

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + L+   +  +L+DM AKCGN++ A ++F  M  + + S+ +MI GL++HGH   A+ L
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M  EG  PD++ F  VL+ACSH GLVE G + F +M   Y I P  +HY CM+DLLG
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G    A  L+ +M ++P  + WG+LLGAC+++ ++ELGE  A  LFELEP+N G+YVL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRK 567
           LSNIYATA RW DV  +R+K+ ++G++K
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKK 602


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/536 (41%), Positives = 334/536 (62%), Gaps = 10/536 (1%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS---LCHSLATPLSYSTAVFNRIVNPN 100
           + KC    H+ +VH+ IIK+ L  D  +    IS   LCH +    + +  VFN+I +PN
Sbjct: 30  LHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQM----NLAVNVFNQIQDPN 85

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             L+NTL++ + QNS+ ++ F  F  + +     D +T+P ++KAC+    +     IH 
Sbjct: 86  VHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHC 145

Query: 161 AVIRWGVDEDVFVGTSLIDLYGK--RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            V ++G   D+FV  SLID Y K     ++ A K+F EM E+++VSW +MI G    GDL
Sbjct: 146 HVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDL 205

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             A+ +FD M ER  VSWN ++ G VK G++  A  LF++MPERNVVS++TM+ GY K G
Sbjct: 206 GRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTG 265

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           DM  AR LF+  P +++V W+ +ISG+A+ G   EA  +++ M +  ++PD+  L+S+++
Sbjct: 266 DMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILA 325

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC++ G L L   V + + +  +  S  +V  ALVDM AKCG +D+A  +F  M  RD+V
Sbjct: 326 ACAESGLLVLGKKVHASIKKIRIKCS-VNVSNALVDMYAKCGRVDKALSIFNEMSMRDLV 384

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+  M++GL++HGHG +A+ LF +M  EG  PD+V    +L AC+H G V+ G  +F +M
Sbjct: 385 SWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSM 444

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           +  + IVP  EHY CM+DLLGR G L+ A+ L+ SMP+EP+   WG LLGAC++++ + L
Sbjct: 445 ERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPL 504

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            E V +RL  LE  + G+Y +LSNI+A A  W  V  +R +MK  G++K  G SS+
Sbjct: 505 AEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSI 560


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/595 (37%), Positives = 342/595 (57%), Gaps = 65/595 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L +I  CK    L  +H+ ++ +        V + +   +S      Y+  VF+ I  PN
Sbjct: 6   LHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPN 65

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            +LW +L+ GY +N ++ E F++F+++ RE      +T   V+KA + +   + G A++ 
Sbjct: 66  AYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYG 125

Query: 161 AVIRWGVDEDVFVGTSLIDL-------------------------------YGKRKEISC 189
            V+++G   D+ V  S++DL                               YG    +  
Sbjct: 126 FVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDI 185

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD- 248
           ARK FD MPERNVVSWT+MI GY   GD+ EA+ +FD MP +   SWN ++ G + IGD 
Sbjct: 186 ARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDC 245

Query: 249 ------------------------------LRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                                         L SA+  FD MP +NV+S+  M+DGY K G
Sbjct: 246 VNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNG 305

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D   AR LF+  P +++V WS +I GYA+NGQP +A+++F     ++++PDE  ++ ++S
Sbjct: 306 DTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIIS 365

Query: 339 ACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           ACSQ+G +D + + + +Y+  S   LS   V  +L+DM AKCG++++A ++FE    +D+
Sbjct: 366 ACSQLGIIDAAESIIHNYVGPSL--LSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDL 423

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           + Y +MI  L+ HG GR A+ LFD+M    + PD V F  VLTAC+H GLV++G ++F+ 
Sbjct: 424 LCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQ 483

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M   + I PS +HYAC+VDLLGR G L+ AY L+ +MP+ PH+  WGALL AC+++ +++
Sbjct: 484 MTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQ 543

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L E+ A  LF++EP N+G+Y+LLSNIYA A RW  V  VR+K++E  +RK  G S
Sbjct: 544 LAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSS 598


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 346/575 (60%), Gaps = 41/575 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVN 98
           +L L+ KC+      Q+H+HIIK GL      ++  I     S +  +SY+ ++FN I  
Sbjct: 32  SLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN F+WN++++G S +         FVR+I     P+ YTFP ++K+C+ + S  EG  I
Sbjct: 92  PNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI 151

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA V++ G   DVF+ TSLI++Y +  E++ A+ VFD+   R+ +S+TA+I GYA  G +
Sbjct: 152 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 211

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-------VSYTT-- 269
             A+ +FD MP +  VSWNA+I G  ++G  + A  LF++M + NV       VS  +  
Sbjct: 212 DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSAC 271

Query: 270 ------------------------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
                                         +ID Y+K GD+ +AR LF+   +RDV++W+
Sbjct: 272 AQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWN 331

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            +I GY       EA+ +F +M +  V+P E   +S++ +C+ +G +DL  W+ +Y++++
Sbjct: 332 VMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKN 391

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             +     +  +L+D+ AKCGN+  A ++F+ M  + + S+ +MI GL++HG   +A  L
Sbjct: 392 -FNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFEL 450

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M S+G+ P+E+ F  +L+AC H GLV+ G +FF +M   Y I P  +HY CM+DLLG
Sbjct: 451 FSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLG 510

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G  + A  LL +M V+P  + WG+LLGAC+ +  +ELGELVA RLFELEP N G+YVL
Sbjct: 511 RAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVL 570

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LSNIYA A +W DV  +R+++ +RG++K+PGC+++
Sbjct: 571 LSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTI 605


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/538 (39%), Positives = 345/538 (64%), Gaps = 6/538 (1%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L  + KC     + Q+H+ II++ L +D  +    IS   SL    + +  VFN++  PN
Sbjct: 23  LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISAL-SLCRQTNLAVRVFNQVQEPN 81

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             L N+L++ ++QNS+  + F +F  + R     D +T+P ++KACS    +     +H 
Sbjct: 82  VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISC--ARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            + + G+  D++V  +LID Y +   +    A K+F++M ER+ VSW +M+ G    G+L
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
            +A+ +FD MP+R  +SWN ++ G  +  ++  A +LF++MPERN VS++TM+ GY+K G
Sbjct: 202 RDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAG 261

Query: 279 DMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           DM  AR +F+  P   ++VV W+ +I+GYA+ G   EA ++   M +  ++ D   ++S+
Sbjct: 262 DMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISI 321

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           ++AC++ G L L   + S L RS++  S A+V+ AL+DM AKCGN+ +A ++F  +P +D
Sbjct: 322 LAACTESGLLSLGMRIHSILKRSNLG-SNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           +VS+ +M+ GL +HGHG++A+ LF RM  EG+ PD+V F  VL +C+H GL+++G  +F 
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           +M+ VY +VP  EHY C+VDLLGR G LK A +++ +MP+EP+   WGALLGAC++++++
Sbjct: 441 SMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEV 500

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++ + V + L +L+P + G+Y LLSNIYA A+ W  V  +RSKMK  G+ K  G SS+
Sbjct: 501 DIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 339/550 (61%), Gaps = 5/550 (0%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P  F     L   L+ + KC     + Q+H+ I+K  L  D  +V   IS   SL   + 
Sbjct: 11  PSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLIS-AFSLCRQML 69

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
            +T  FN++  PN  L+NT+++ +S NS+  + F  F  + R+    D +TFP ++K C+
Sbjct: 70  LATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCT 129

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE--ISCARKVFDEM-PERNVVS 204
             + +    ++HA + ++G   DVFV  SLID Y K     IS A+K+F  M   R+VVS
Sbjct: 130 GNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVS 189

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           W +MI G A  G   EA+ VFD MPE+  +SWN ++ G VK+G +  A +LFDEMPERNV
Sbjct: 190 WNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNV 249

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           VS++TM+ GY K GDM  AR LF+  P +++V+W+ ++SG+A+ G   EA+ +F  M   
Sbjct: 250 VSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKA 309

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            ++ D   ++S+++AC++ G L L   + + +  ++   +   +  ALVDM AKCG ++ 
Sbjct: 310 CLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCT-TEISNALVDMYAKCGRLNI 368

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A ++F  + N+DVVS+ +M++GL++HGHG +A+ LF RM  EG +P++V    VL AC+H
Sbjct: 369 AYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTH 428

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GL++DG R+F  M+  Y +VP  EHY CMVDLLGR G L+ A  L+ +MP+ P+A  WG
Sbjct: 429 AGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWG 488

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
            LLGAC++++ +EL   V + L ELEP ++G++ +LSNIYA A  W  V   R +M+  G
Sbjct: 489 TLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIG 548

Query: 565 LRKIPGCSSL 574
            +K  G SS+
Sbjct: 549 TKKPSGASSI 558


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/596 (39%), Positives = 337/596 (56%), Gaps = 86/596 (14%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            HL Q+H+ II   L   +  VA  I+ C  L  P  Y+  +FN  +NPN F++ ++L+ 
Sbjct: 15  NHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           YS      +V  ++ ++      PD + +P++IK+         G   HA V++ G   D
Sbjct: 75  YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSD 129

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDE---------------------------------M 197
            FV  ++ID+Y +   I  ARKVFDE                                 M
Sbjct: 130 AFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVM 189

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
           PERNV++WTAM+ GYA V DL  A+  FD MPERS VSWNA++ G  + G    A +LFD
Sbjct: 190 PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFD 249

Query: 258 EM------PER---------------------------------NVVSYTTMIDGYAKVG 278
           EM      P+                                  N    T ++D YAK G
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFG 309

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLM 337
           D+ SAR LF   P R+VV W+++I+GYAQNGQ   A+++F +M + K + PDE  +VS++
Sbjct: 310 DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 369

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           SAC  +G L+L NWV  +L+ + + LS   H   A++ M ++CG+M+ A  +F+ M  RD
Sbjct: 370 SACGHLGALELGNWVVRFLTENQIKLSISGH--NAMIFMYSRCGSMEDAKRVFQEMATRD 427

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VVSY ++I G + HGHG +A++L   M   G+ PD V F  VLTACSH GL+E+G + FE
Sbjct: 428 VVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFE 487

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           ++++     P+ +HYACMVDLLGR G L+ A   +  MP+EPHA  +G+LL A +++  +
Sbjct: 488 SIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQV 542

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELGEL AN+LFELEP N+G+++LLSNIYA+A RW DV  +R  MK+ G++K  G S
Sbjct: 543 ELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWS 598


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/555 (41%), Positives = 341/555 (61%), Gaps = 14/555 (2%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLA 83
           P  F +   L   L  + KC     ++Q+H+ ++K  L QD      L+A F SLC  LA
Sbjct: 12  PTWFSRRRLLEEKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAF-SLCRHLA 70

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAVPDKYTFPLV 142
           + ++    VFN + +PN  L+N++++ ++ NS    + F  F ++ +    PD +T+P +
Sbjct: 71  SAVN----VFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFL 126

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--RKEISCARKVFDEMPER 200
           +KACS   S+     IHA V + G   D+FV  SLID Y +     +  A  +F  M ER
Sbjct: 127 LKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEER 186

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           +VV+W +MI G    G+L  A  +FD MP+R  VSWN ++ G  K G++ +A +LF+ MP
Sbjct: 187 DVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMP 246

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            RN+VS++TM+ GY+K GDM  AR LF+  P ++VV W+ +I+GYA+ G   EA +++  
Sbjct: 247 WRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGK 306

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M    ++PD+  L+S+++AC++ G L L   + + + R       A V+ A +DM AKCG
Sbjct: 307 MEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCG-AKVLNAFIDMYAKCG 365

Query: 381 NMDRAAELFE-TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
            +D A ++F   M  +DVVS+ SMI+G ++HGHG +A+ LF  M+ EG  PD   F  +L
Sbjct: 366 CLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLL 425

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
            AC+H GLV +G ++F +M+ VY IVP  EHY CM+DLLGR GHLK A+ LL SMP+EP+
Sbjct: 426 CACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPN 485

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A   G LL AC++++D++L   V  +LF+LEP + G+Y LLSNIYA A  W++V  VR +
Sbjct: 486 AIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQ 545

Query: 560 MKERGLRKIPGCSSL 574
           MK  G  K  G SS+
Sbjct: 546 MKNTGGEKPSGASSI 560


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/555 (40%), Positives = 341/555 (61%), Gaps = 14/555 (2%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLA 83
           P  F +   L   L  + KC     ++Q+H+ ++K  L QD      L+A F SLC  LA
Sbjct: 12  PTWFSRQRLLEEKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAF-SLCRHLA 70

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAVPDKYTFPLV 142
           + ++    VFN + +PN  L+N++++ ++ N+    + F  F ++ +    PD +T+P +
Sbjct: 71  SAVN----VFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFL 126

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--RKEISCARKVFDEMPER 200
           +KAC+   S+     IHA V ++G   D+FV  SLID Y +     +  A  +F  M ER
Sbjct: 127 LKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKER 186

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           +VV+W +MI G    G+L  A  +FD MPER  VSWN ++ G  K G++  A +LF+ MP
Sbjct: 187 DVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMP 246

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           +RN+VS++TM+ GY+K GDM  AR LF+  P ++VV W+ +I+GYA+ G   EA +++  
Sbjct: 247 QRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGK 306

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M    ++PD+  L+S+++AC++ G L L   + + + R         V+ A +DM AKCG
Sbjct: 307 MEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCG-TKVLNAFIDMYAKCG 365

Query: 381 NMDRAAELFE-TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
            +D A ++F   M  +DVVS+ SMI+G ++HGHG +A+ LF RM+ EG  PD   F  +L
Sbjct: 366 CLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLL 425

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
            AC+H GLV +G ++F +M+ VY IVP  EHY CM+DLLGR GHLK A+ LL SMP+EP+
Sbjct: 426 CACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPN 485

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A   G LL AC++++D++    V  +LF++EP + G+Y LLSNIYA A  W++V  VR +
Sbjct: 486 AIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQ 545

Query: 560 MKERGLRKIPGCSSL 574
           M   G +K  G SS+
Sbjct: 546 MMNTGGQKPSGASSI 560


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 336/554 (60%), Gaps = 39/554 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPL---SYSTAVFNRIVNPNTFLWNTLLKGY 111
           Q H+ II  G      L+   I L  +   P     Y  ++   + +P++F W   ++ +
Sbjct: 41  QTHACIIINGFNNLEPLLVRQI-LLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRYF 99

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           SQ  +F E   ++V++ R+   P  +     ++A +       G +IHA   ++G    V
Sbjct: 100 SQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCV 159

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVV---------------------------- 203
           +V T+L+DLY K  +++ A+KVFDE+ E+NVV                            
Sbjct: 160 YVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKK 219

Query: 204 ---SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
              SW +MI GYA +GD+  A  +F  MPE++  SWNALI G V  GD++SA + FD MP
Sbjct: 220 DVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMP 279

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           ERN VS+ TMI GY+K GD+ SA  LF+    +D++ ++A+IS +AQN QP +A+ +FS+
Sbjct: 280 ERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSE 339

Query: 321 MCS--KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
           M     N+QPD+  L S++SACSQ+G+L  ++W++SY++    ++    ++ AL+D+ AK
Sbjct: 340 MLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDD-QLVTALLDLYAK 398

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG++D+A ELF  +  +DVV+Y +MI G  I+G    A+ LFD M+   + P+   FT +
Sbjct: 399 CGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGL 458

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           LTAC+H GLV++G+RFF +M++ + +VPS +HYA MVDLLGR G L+ AYEL+ SMP++P
Sbjct: 459 LTACNHAGLVKEGYRFFSSMKD-HGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQP 517

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
           H+  WGALL AC +++++ELGE+ A   F LE      Y LL+NIY++A RW DV  +R 
Sbjct: 518 HSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRK 577

Query: 559 KMKERGLRKIPGCS 572
             KE+ L K+ GCS
Sbjct: 578 LWKEKKLAKLSGCS 591


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 326/577 (56%), Gaps = 42/577 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVN 98
           +LTL+  CK    L Q+HS IIK GL   H  ++  I  C  S    LSY+ ++F  I N
Sbjct: 31  SLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRN 90

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN  +WN +++G S +         +V +I     P++YTFP + K+C+ +    EG  +
Sbjct: 91  PNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQV 150

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA V++ G++ + FV TSLI++Y +  E+  AR VFD+   R+ VS+TA+I GYAS G L
Sbjct: 151 HAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFL 210

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV-SYTTM------- 270
            EA+ +FD +P R  VSWNA+I G  + G +  A   F+EM    V  + +TM       
Sbjct: 211 DEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSAC 270

Query: 271 --------------------------------IDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                                           ID Y K GD+  A +LFE   D++VV+W
Sbjct: 271 AQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSW 330

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           + +I GY       EA+ +F  M   N+ P++   +S++ AC+ +G LDL  WV +Y+ +
Sbjct: 331 NVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDK 390

Query: 359 SHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +   +     +  +L+DM AKCG++  A  +F+ M  + + ++ +MI G ++HGH   A+
Sbjct: 391 NMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTAL 450

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LF RM SEG  PD++ F  VLTAC H GL+  G R+F +M   Y + P   HY CM+DL
Sbjct: 451 GLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDL 510

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
            GR G    A  L+ +M ++P  + W +LLGAC+++  IEL E VA  LFELEP+N  +Y
Sbjct: 511 FGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAY 570

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VLLSNIYA A RW DV  +R+++ +  ++K+PGCSS+
Sbjct: 571 VLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSI 607


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/550 (40%), Positives = 335/550 (60%), Gaps = 14/550 (2%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV--AHFISLC-HSLATPLSYSTAVFN 94
           LS L+ ++ CK    L Q+H+ IIK     D  L       +LC  SL     Y+ ++  
Sbjct: 23  LSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLA 82

Query: 95  RIVNPNTFLWNTLLKGY-SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           ++  PN  L+N +++G  + N+  IE   ++ +++ +  VPD YT P V+KAC+   +VR
Sbjct: 83  QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 142

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           EG  +H   I+ G+  DV+V  +L+ +Y     I  ARKVFD  P+R++VSWT MI GY 
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202

Query: 214 SVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-- 267
            +G   E   +F  M     +   ++   ++    ++GDLR  R+L   +   + V+   
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262

Query: 268 ---TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                ++D Y K GD   AR +F+  P ++VV+W+++ISG AQ GQ  E++ +F  M   
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+PD+  LV+++++C+ +G L+L  WV +YL R+ +  +   +  ALVDM AKCG++D+
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR-ADGFIGNALVDMYAKCGSIDQ 381

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F+ M  +DV SY +MI GL++HG G +A+ LF  M   G+ PDEV F  VLTACSH
Sbjct: 382 ACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSH 441

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           VGLVE+G ++FE M  +Y + P  EHY CMVDLLGR G +  A E + +MP+EP A   G
Sbjct: 442 VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLG 501

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGACK++  +ELGE V  ++ ++EP+  G+YVL+SNIY++A+RW D   +R  MKER 
Sbjct: 502 ALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERN 561

Query: 565 LRKIPGCSSL 574
           L K PGCSS+
Sbjct: 562 LEKTPGCSSI 571


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 340/566 (60%), Gaps = 37/566 (6%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH--SLATPLSYSTAVFNRIVNP 99
           TL+KKC    H  Q+H+ II   L     +  H I LC   +  T  +Y  ++ + + NP
Sbjct: 8   TLMKKCSTVKHAKQIHAQIITNNLTHLEPIFIHRILLCDITNYKTISNYILSILHHLRNP 67

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           ++F W  +++ +SQ  +F+E  +++V++ R    P  +    ++K+C+ V     G  IH
Sbjct: 68  DSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVEDDLCGLLIH 127

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V ++G D  V+V T+L+DLY K  ++  ARKVFDEMP++NVVSW +++ GY   G+L 
Sbjct: 128 GHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGGNLD 187

Query: 220 EAKTVFD-------------------------------LMPERSNVSWNALIGGLVKIGD 248
           E +  FD                                MPER+  SWN +I G V  G 
Sbjct: 188 EGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCGS 247

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           +  AR+LFD MP RN VS  TMI GY+K GD+ SAR LF+   D+D+++++A+I+ YAQ+
Sbjct: 248 IVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQS 307

Query: 309 GQPDEAVKIFSDMCS--KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
            +P EA+ +F+ M     ++ PD+  L S++SACSQ+GNL+   W++S ++   + L   
Sbjct: 308 SKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDD- 366

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
           H+  AL+D+ AKCG++D+A ELF  +  RDVV+Y +MI G  I+G    AV LF+RM  E
Sbjct: 367 HLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMAGE 426

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
            + P+ V +T +LTA +H GL E+G+R F +M++   IVPS +HY  MVDLLGR G L  
Sbjct: 427 CIIPNLVTYTGILTAYNHAGLAEEGYRCFISMKD-NGIVPSVDHYGIMVDLLGRAGWLDE 485

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           AY+L+  MP++P+   WGALL AC+L+ +++LGE+      +LE + AG Y LLS IYAT
Sbjct: 486 AYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGYYSLLSGIYAT 545

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
             +W D   + + ++ + + KIPGCS
Sbjct: 546 VGKWNDAKKLTTGVEGKKIIKIPGCS 571


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/573 (38%), Positives = 337/573 (58%), Gaps = 40/573 (6%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVN 98
            L +++ C     L Q+ + +   G+      V+  I+ C  + +  L Y+  +FNR+  
Sbjct: 160 TLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQ 219

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PNTF+WNT+++GY    + I  F+ FV + +     D  +F   +KAC    +V EG ++
Sbjct: 220 PNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESV 279

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           +  V + G D ++ V   LI  Y +R  +  AR+VFDE  +++VV+WT MI GYA+    
Sbjct: 280 YCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCS 339

Query: 219 VEAKTVFDLM----------------------------------PERSNVS-----WNAL 239
            EA  VF+LM                                   E  N+       NAL
Sbjct: 340 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNAL 399

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +   VK   L  AR+LFD M  ++V S+T+M++GYAK GD+ SAR  F+  P ++ V WS
Sbjct: 400 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 459

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+I+GY+QN +P E++K+F +M  + V P E  LVS++SAC Q+  L+L +W+  Y    
Sbjct: 460 AMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVG 519

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            +      +  A+VDM AKCG++D A E+F TMP R+++S+ +MI G + +G  +QA+++
Sbjct: 520 KIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINV 579

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           FD+M + G  P+ + F  +LTACSH GL+ +G  +F+ M+  Y I P   HYACMVDLLG
Sbjct: 580 FDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLG 639

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           RTG L+ AY+L+ +MP++P  +AWGALL AC+++ ++EL  L A+ L  L+P+++G YVL
Sbjct: 640 RTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVL 699

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+N  A   +W DV  VRS MK++G++KIPG S
Sbjct: 700 LANTCANDRKWSDVRRVRSLMKDKGVKKIPGYS 732


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/577 (38%), Positives = 343/577 (59%), Gaps = 44/577 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD-HSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           ++LI +C     L Q H+H+I+ G+  D +S    F     S    L Y+  VF+ I  P
Sbjct: 35  ISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQP 94

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA--VPDKYTFPLVIKACSHVLSVREGTA 157
           N+F WNTL++ Y+     +     F+ ++  E+   P+KYTFP +IKA + V S+  G +
Sbjct: 95  NSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 154

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H   I+  V  DVFV  SLI  Y    ++  A KVF  + E++VVSW +MI G+   G 
Sbjct: 155 LHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 214

Query: 218 LVEAKTVFDLM------------------------------------PERSNVSW---NA 238
             +A  +F  M                                      R NV+    NA
Sbjct: 215 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANA 274

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           ++    K G +  A++LFD M E++ V++TTM+DGYA   D  +AR +  A P +D+VAW
Sbjct: 275 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAW 334

Query: 299 SALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           +ALIS Y QNG+P+EA+ +F ++   KN++ ++  LVS +SAC+QVG L+L  W+ SY+ 
Sbjct: 335 NALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIK 394

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           ++ + ++  +V +AL+ M +KCG++++A E+F ++  RDV  + +MI GL++HG G +AV
Sbjct: 395 KNGIKMN-FYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAV 453

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            +F +M    + P+ V FT V  ACSH GLV++    F  M++ Y IVP  +HYAC+VD+
Sbjct: 454 DMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDV 513

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR+G+L+ A + + +MP+ P  S WGALLGACK+++++ L E+   RL ELEP+N G++
Sbjct: 514 LGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAH 573

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VLLSNIYA + +W +V  +R  M+  GL+K PGCSS+
Sbjct: 574 VLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/587 (36%), Positives = 339/587 (57%), Gaps = 48/587 (8%)

Query: 32  PKPSCLLS-----ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC--HSLAT 84
           P P+ L S      L+LIK CK    L Q+HS  I  GL  +  + A  I+ C  H L  
Sbjct: 9   PPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGD 68

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            + Y+  VF+ +  PN F+WN ++KGYS+        +++  ++    +PD+YT+P ++K
Sbjct: 69  -MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLK 127

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
             +   +V+ G  +H  +++ G   +VFV  +LI LY    E+S AR VFD   + +VV+
Sbjct: 128 RFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVT 187

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMP----------------------------------- 229
           W  MI GY       E+  +FD M                                    
Sbjct: 188 WNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK 247

Query: 230 ----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
               E   V  NALI      GD+ +A  +FD M  R+V+S+T ++ G+  +G +  AR+
Sbjct: 248 DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARN 307

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            F+  P+RD V+W+A+I GY Q  +  E + +F +M + N++PDEF +VS+++AC+ +G 
Sbjct: 308 YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGA 367

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+L  W+ +Y+ ++ + +  + V  AL+DM   CGN+++A  +F  MP+RD +S+ ++I 
Sbjct: 368 LELGEWIKAYIDKNEIKID-SFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIF 426

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL+I+G+G +A+ +F +ML   +TPDEV    VL AC+H G+V+ G +FF  M   + I 
Sbjct: 427 GLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIE 486

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+  HY CMVDLLGR GHLK A+E++ +MPV+P++  WG+LLGAC+++ D E+ E+ A +
Sbjct: 487 PNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQ 546

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + ELEP+N   YVLL NIYA  +RW  +  VR  M +RG++K PGCS
Sbjct: 547 ILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCS 593


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/541 (41%), Positives = 332/541 (61%), Gaps = 11/541 (2%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           +T + KC    H+ Q+H+ +IK  L QD  +    I+  +SL   LS +  VFN++ +PN
Sbjct: 26  ITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIA-SYSLTNNLSSAVNVFNQVPDPN 84

Query: 101 TFLWNTLLKGYS---QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC---SHVLSVRE 154
             L+N L++ YS     S  +  F + +++  +  + D +T+P ++K C   S  LS+ +
Sbjct: 85  VHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVK 144

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
              +HA V + G   D+FV  SLID Y +  ++  A KVF  M ER+VVSW +M+ G   
Sbjct: 145 --MVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVK 202

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
            GDL  A  VFD MPER  VSWN ++ G  K G++  A +LF+ M ER++VS++TM+ GY
Sbjct: 203 NGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGY 262

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           +K GDM  AR LF+  P +++V W+ +ISGYA+ GQ  EA+ +  +M    ++ D+   +
Sbjct: 263 SKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFI 322

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S+++AC++ G L L   +     RS    S   V+ + +DM AKCG +D A  +F  M  
Sbjct: 323 SILAACAESGMLGLGKKMHDSFLRSRFRCS-TKVLNSFIDMYAKCGCVDDAFRVFNGMKT 381

Query: 395 -RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +D+VS+ SMI G  IHGHG +++ LF+ M+ EG  PD   F  +L AC+H GLV +G  
Sbjct: 382 EKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRG 441

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           +F +MQ VY IVP  EHY CMVDLLGR GHLK A+ L+ SMP EP+A   G LLGAC+++
Sbjct: 442 YFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMH 501

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
           +D++L   V+  LF+L P + G++ LLSNIYA +  W++V  VR +M + G +K  G SS
Sbjct: 502 NDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSS 561

Query: 574 L 574
           +
Sbjct: 562 I 562


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/543 (40%), Positives = 328/543 (60%), Gaps = 13/543 (2%)

Query: 41  LTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           L++IK C  Q+ L    +VH  II +G E D  +V   ++  ++    L  +  VF+R+ 
Sbjct: 124 LSVIKACGSQSDLQAGRKVHEDIIARGFESD-VIVGTALASMYTKCGSLENARQVFDRMP 182

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
             +   WN ++ GYSQN +  E   +F  +      P+  T   V+  C+H+L++ +G  
Sbjct: 183 KRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ 242

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH   IR G++ DV V   L+++Y K   ++ A K+F+ MP R+V SW A+I GY+    
Sbjct: 243 IHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQ 302

Query: 218 LVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTT 269
             EA   F+ M  R    ++++  +++     +  L   +Q+         E N V    
Sbjct: 303 HHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNA 362

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +++ YAK G++ SA  LFE  P ++VVAW+A+ISGY+Q+G P EA+ +F +M ++ ++PD
Sbjct: 363 LVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPD 422

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
            F +VS++ AC+    L+    +  Y  RS  + S   V   LVD+ AKCGN++ A +LF
Sbjct: 423 SFAIVSVLPACAHFLALEQGKQIHGYTIRSGFE-SNVVVGTGLVDIYAKCGNVNTAQKLF 481

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E MP +DVVS+ +MI    IHGHG  A++LF +M   G   D +AFT +LTACSH GLV+
Sbjct: 482 ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVD 541

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G ++F+ M++ Y + P  EHYAC+VDLLGR GHL  A  ++ +M +EP A+ WGALLGA
Sbjct: 542 QGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGA 601

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+++ +IELGE  A  LFEL+P NAG YVLLSNIYA A RW DV  +R  MKE+G++K P
Sbjct: 602 CRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQP 661

Query: 570 GCS 572
           GCS
Sbjct: 662 GCS 664



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 229/436 (52%), Gaps = 25/436 (5%)

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           +  N  +W   + GY +N  + +   ++ ++ R    PDK  F  VIKAC     ++ G 
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H  +I  G + DV VGT+L  +Y K   +  AR+VFD MP+R+VVSW A+I GY+  G
Sbjct: 141 KVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNG 200

Query: 217 DLVEAKTVFDLM------PERSN-VSWNALIGGLVKIGDLRSARQL----FDEMPERNVV 265
              EA  +F  M      P  S  VS   +   L+    L   +Q+         E +V+
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLA---LEQGKQIHCYAIRSGIESDVL 257

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
               +++ YAK G++ +A  LFE  P RDV +W+A+I GY+ N Q  EA+  F+ M  + 
Sbjct: 258 VVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           ++P+   +VS++ AC+ +  L+    +  Y  RS  + S   V  ALV+M AKCGN++ A
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFE-SNDVVGNALVNMYAKCGNVNSA 376

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            +LFE MP ++VV++ ++I G S HGH  +A++LF  M ++G+ PD  A   VL AC+H 
Sbjct: 377 YKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF 436

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHAS 501
             +E G +      + Y I    E        +VD+  + G++ +A +L   MP E    
Sbjct: 437 LALEQGKQI-----HGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVV 490

Query: 502 AWGALLGACKLYSDIE 517
           +W  ++ A  ++   E
Sbjct: 491 SWTTMILAYGIHGHGE 506



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 210/424 (49%), Gaps = 24/424 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  S L+S + +           Q+H + I+ G+E D  +V   +++ ++    ++ +  
Sbjct: 219 PNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNM-YAKCGNVNTAHK 277

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F R+   +   WN ++ GYS NS+  E    F R+      P+  T   V+ AC+H+ +
Sbjct: 278 LFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +G  IH   IR G + +  VG +L+++Y K   ++ A K+F+ MP++NVV+W A+I G
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP----ERN 263
           Y+  G   EA  +F  M  +     + +  +++        L   +Q+         E N
Sbjct: 398 YSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESN 457

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VV  T ++D YAK G++ +A+ LFE  P++DVV+W+ +I  Y  +G  ++A+ +FS M  
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              + D     ++++ACS  G +D        +   +    +    A LVD+  + G++D
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577

Query: 384 RAAELFETM---PNRDVVSYCSMIKGLSIHGH---GRQAVS-LFDRMLSEGLTPDEVAFT 436
            A  + + M   P+ +V  + +++    IH +   G QA   LF+      L PD   + 
Sbjct: 578 EANGIIKNMSLEPDANV--WGALLGACRIHCNIELGEQAAKHLFE------LDPDNAGYY 629

Query: 437 IVLT 440
           ++L+
Sbjct: 630 VLLS 633


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 342/561 (60%), Gaps = 8/561 (1%)

Query: 12  KHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL 71
           K +S  S  PN   + P N P+       L+L   CK   HL QVH+ II          
Sbjct: 78  KLQSSMSRTPNPLTNPPSN-PQ------ILSLFNPCKTLRHLKQVHAQIITHHNSPFQLS 130

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131
               +S      T L+Y+  +F+ + NP   L+N+L++  S +   +E   ++  +++  
Sbjct: 131 ALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSG 190

Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
             PD  T+P VIKAC+       G  +H  V++ G + D ++ +SLI LY   K++  A+
Sbjct: 191 LKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAK 250

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
           ++F+    R+VVSW AMI GY    ++  A+ VFD M  R  +SWN +I G   +G +  
Sbjct: 251 QLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDE 310

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           A++LFDEMPERN+VS+ +M+ G+ K G++  A  LF   P RDVV+W+++++ YAQ G+P
Sbjct: 311 AKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKP 370

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           +EA+ +F  M +  V+P E  +VSL+SAC+ +G LD    + +Y++ + ++++   V  A
Sbjct: 371 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTA 429

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           LVDM AKCG +  A ++F  M ++DV+++ ++I G++IHG+ ++A  LF  M   G+ P+
Sbjct: 430 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPN 489

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           ++ F  +L+ACSH G+V++G +  + M + Y I P  EHY C++DLL R G L+ A EL+
Sbjct: 490 DITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELI 549

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MP+EP+ SA GALLG C+++ + ELGE+V  RL  L+P ++G Y+LLSNIYA A +W 
Sbjct: 550 GTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWD 609

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D   VR+ MK  G+ K+PG S
Sbjct: 610 DARKVRNLMKVNGISKVPGVS 630


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 340/576 (59%), Gaps = 43/576 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD-HSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           ++LI++C     L Q H H+I+ G   D +S    F     S    L Y+  VF+ I  P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAI 158
           N+F WNTL++ Y+     +     F+ ++ E +  P+KYTFP +IKA + V S+  G ++
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   ++  V  DVFV  SLI  Y    ++  A KVF  + E++VVSW +MI G+   G  
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 219 VEAKTVFDLM------------------------------------PERSNVSW---NAL 239
            +A  +F  M                                      R NV+    NA+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +    K G +  A++LFD M E++ V++TTM+DGYA   D  +AR +  + P +D+VAW+
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWN 333

Query: 300 ALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           ALIS Y QNG+P+EA+ +F ++   KN++ ++  LVS +SAC+QVG L+L  W+ SY+ +
Sbjct: 334 ALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK 393

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             + ++  HV +AL+ M +KCG+++++ E+F ++  RDV  + +MI GL++HG G +AV 
Sbjct: 394 HGIRMN-FHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVD 452

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           +F +M    + P+ V FT V  ACSH GLV++    F  M++ Y IVP  +HYAC+VD+L
Sbjct: 453 MFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVL 512

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR+G+L+ A + + +MP+ P  S WGALLGACK+++++ L E+   RL ELEP+N G++V
Sbjct: 513 GRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHV 572

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LLSNIYA   +W +V  +R  M+  GL+K PGCSS+
Sbjct: 573 LLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 355/567 (62%), Gaps = 19/567 (3%)

Query: 25  RSAPINFPKPSCLLS-----ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC 79
           RS P+   +   L S      L+L+++ K + +L Q+H+ +++  LE + +L   FI+ C
Sbjct: 135 RSQPMRGNQQQSLWSPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATC 194

Query: 80  HSLA------TPLS---YSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
            S+A       PL+   ++  +F+ R    + FL N+++K Y    ++ E F ++  L R
Sbjct: 195 SSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRR 254

Query: 130 EEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
             +  PD +TF ++ K+C+  +++ EG  IH+ V+  G   D++  T+L+D+Y K  ++ 
Sbjct: 255 NTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMD 314

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD 248
           CARK+FDEM +R+ VSWTA+I GY   GD+  A  +FD M E+ + ++N +I   VK+GD
Sbjct: 315 CARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGD 374

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           + SAR+LFDEMPER+VVS+T MI GY+  G++ SARSLF+A P++++ +W+A+ISGY QN
Sbjct: 375 MCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQN 434

Query: 309 GQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
            QP EA+K+F +M S  +++PDE  +VS++ A + +G LDL  WV  ++ R  +D +  +
Sbjct: 435 KQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRA-TN 493

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  AL+DM AKCG + ++  +F+ MP ++  S+ ++I   +I+G  ++A+ LF  M  +G
Sbjct: 494 VGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG 553

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
             P+E+    VL+AC+H GLVE+G R+F+AM+  + + P  EHY CMVDLLGR G L+ A
Sbjct: 554 FMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQEA 612

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
            +L+ SMP E +     + L AC    D+   E V     ++E  N G+Y++L N+YA  
Sbjct: 613 EKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANE 672

Query: 548 DRWLDVCLVRSKMKERGLRKIPGCSSL 574
            RW +   V+  M+  G++K  GCS++
Sbjct: 673 KRWKEADEVKGLMRRNGVKKEAGCSAI 699


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 334/592 (56%), Gaps = 63/592 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+K+C+    L  +H+H++  G      L  + +   +S    +SY+  +F+    PN+F
Sbjct: 9   LLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSF 68

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LW  L+ G+++N+++   F  F+++ RE  VP  +T   V+KA S +  +++G  ++   
Sbjct: 69  LWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLA 128

Query: 163 IRWGVDEDVFVGTSLIDL-------------------------------YGKRKEISCAR 191
           +R G + D+ V   +I+L                               YG    +  AR
Sbjct: 129 VRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIAR 188

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW--------------- 236
           K+FD M ERNV+SWT+MI GY   GDL+EA+ +F+ MPE+   SW               
Sbjct: 189 KLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVA 248

Query: 237 ----------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                           N +I G  K G++ +A++ FD M ERNV S+  +IDGY KVGD+
Sbjct: 249 ARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDV 308

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            +ARS+F+  P++++VAWS +I GYA+ G P  ++K++     + ++PDE   + ++SAC
Sbjct: 309 DAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISAC 368

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           SQ+G  D +  V        +      V+ +L+DM AKCGN++RA ++FE +  +D+  Y
Sbjct: 369 SQLGVPDTAESVICDFVGPSL-FPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCY 427

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I   + HG    A+SLF  M    + PD VAF  VLTAC+H GLV +G R F  M +
Sbjct: 428 STVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMID 487

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I PS +HYACMVD+LGR G L+ A+ L+ SMPV P+A+ WGALL AC+++ +++L E
Sbjct: 488 EYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAE 547

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             A  LF++EP N+G+YVLL NIYA A +W D   VR+ ++E  +RK  G S
Sbjct: 548 AAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSS 599


>gi|242073008|ref|XP_002446440.1| hypothetical protein SORBIDRAFT_06g016100 [Sorghum bicolor]
 gi|241937623|gb|EES10768.1| hypothetical protein SORBIDRAFT_06g016100 [Sorghum bicolor]
          Length = 349

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 255/343 (74%)

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MP R+ V WN ++ G VK GDL  A++LFDEMPER   + T++I GYAK G+M  AR LF
Sbjct: 1   MPHRNAVHWNLMVDGYVKCGDLEGAKRLFDEMPERTATACTSLIGGYAKTGNMEIARLLF 60

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   DRD+ +WS +ISGYAQNG P EA++ F +   + + PDE ++V LMSACSQ+GN+ 
Sbjct: 61  DKLEDRDLFSWSVMISGYAQNGYPGEALRTFDEFQGQGIHPDELLVVGLMSACSQLGNIR 120

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L+ W++ Y+++  +D+  AHV+A LV+MNAKCGN++RA  LFE+MP RDV SYCS+++G 
Sbjct: 121 LARWIEDYVTKYSIDMKNAHVLAGLVNMNAKCGNLERATVLFESMPVRDVFSYCSLMQGH 180

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HG   +AV LF +ML EGL+PD  AFT+VLTACSH GLVE+  +FF+ M+NVY IVPS
Sbjct: 181 CLHGSANKAVELFSQMLLEGLSPDNAAFTVVLTACSHAGLVEEAKKFFDMMKNVYLIVPS 240

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY C+V LLGR G L+ AY+L+ SMP +PH  AWGALLG CKL+ +IELG++ A +LF
Sbjct: 241 GEHYGCLVSLLGRCGMLEDAYQLIMSMPGKPHPGAWGALLGGCKLHCNIELGKIAAKKLF 300

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           E+EP NAG+YV LSN+YA  DRW DV  VR +M  + + KI G
Sbjct: 301 EIEPDNAGNYVSLSNMYANIDRWGDVSEVRDEMTGKRITKIAG 343



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 130/275 (47%), Gaps = 41/275 (14%)

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           ++D Y K  ++  A+++FDEMPER   + T++I GYA  G++  A+ +FD + +R   SW
Sbjct: 12  MVDGYVKCGDLEGAKRLFDEMPERTATACTSLIGGYAKTGNMEIARLLFDKLEDRDLFSW 71

Query: 237 NALIGGLVKIGDLRSARQLFDEMP------------------------------ERNVVS 266
           + +I G  + G    A + FDE                                E  V  
Sbjct: 72  SVMISGYAQNGYPGEALRTFDEFQGQGIHPDELLVVGLMSACSQLGNIRLARWIEDYVTK 131

Query: 267 YTT----------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           Y+           +++  AK G++  A  LFE+ P RDV ++ +L+ G+  +G  ++AV+
Sbjct: 132 YSIDMKNAHVLAGLVNMNAKCGNLERATVLFESMPVRDVFSYCSLMQGHCLHGSANKAVE 191

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +FS M  + + PD      +++ACS  G ++ +      +   ++ +        LV + 
Sbjct: 192 LFSQMLLEGLSPDNAAFTVVLTACSHAGLVEEAKKFFDMMKNVYLIVPSGEHYGCLVSLL 251

Query: 377 AKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIH 410
            +CG ++ A +L  +MP +    ++ +++ G  +H
Sbjct: 252 GRCGMLEDAYQLIMSMPGKPHPGAWGALLGGCKLH 286



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++ + + F W+ ++ GY+QN    E    F     +   PD+     ++ ACS + +
Sbjct: 59  LFDKLEDRDLFSWSVMISGYAQNGYPGEALRTFDEFQGQGIHPDELLVVGLMSACSQLGN 118

Query: 152 VREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +R    I   V ++ +D ++  V   L+++  K   +  A  +F+ MP R+V S+ +++ 
Sbjct: 119 IRLARWIEDYVTKYSIDMKNAHVLAGLVNMNAKCGNLERATVLFESMPVRDVFSYCSLMQ 178

Query: 211 GYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVV- 265
           G+   G   +A  +F  M        N ++  ++      G +  A++ FD M    ++ 
Sbjct: 179 GHCLHGSANKAVELFSQMLLEGLSPDNAAFTVVLTACSHAGLVEEAKKFFDMMKNVYLIV 238

Query: 266 ----SYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISG 304
                Y  ++    + G +  A  L  + P +    AW AL+ G
Sbjct: 239 PSGEHYGCLVSLLGRCGMLEDAYQLIMSMPGKPHPGAWGALLGG 282



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 49/212 (23%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +T +F  +   + F + +L++G+  +    +   +F +++ E   PD   F +V+ A
Sbjct: 155 LERATVLFESMPVRDVFSYCSLMQGHCLHGSANKAVELFSQMLLEGLSPDNAAFTVVLTA 214

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV-- 203
           CSH   V E                                   A+K FD M    ++  
Sbjct: 215 CSHAGLVEE-----------------------------------AKKFFDMMKNVYLIVP 239

Query: 204 ---SWTAMIVGYASVGDLVEAKTVFDLMPERSN-VSWNALIGGL-----VKIGDLRSARQ 254
               +  ++      G L +A  +   MP + +  +W AL+GG      +++G + +A++
Sbjct: 240 SGEHYGCLVSLLGRCGMLEDAYQLIMSMPGKPHPGAWGALLGGCKLHCNIELGKI-AAKK 298

Query: 255 LFDEMPER--NVVSYTTMIDGYAKVGDMTSAR 284
           LF+  P+   N VS + M     + GD++  R
Sbjct: 299 LFEIEPDNAGNYVSLSNMYANIDRWGDVSEVR 330


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 341/596 (57%), Gaps = 47/596 (7%)

Query: 25  RSAPINFPKPSCLLSA---LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           RS    F  P+  LS    ++ +K CK  THL Q+H+ I + GL QD   +   ++ C  
Sbjct: 22  RSKFSTFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTD 81

Query: 82  -LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
                L+Y+  +F  I  P   ++N ++K +++   +     +F +L  +   PD +T+P
Sbjct: 82  PFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYP 141

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            V KA  ++  V +   +   V + G++ D +V  SLID+Y +       + +FDEMP+R
Sbjct: 142 FVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDR 201

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVF-------DLMPE----------------------- 230
           +V+SW  MI GY       +A  VF        LMP+                       
Sbjct: 202 DVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKI 261

Query: 231 ----RSNVSWNALIGGLV-----KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
               R NV +  +IG  +     K G L  AR +F+EMP +NV+ +TTM+ GYA  G++ 
Sbjct: 262 HHYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELE 321

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            AR LFE +P RDVV W+A+I+GY Q  + DEAV +F +M  + V+PD+FI+VSL++ C+
Sbjct: 322 EARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCA 381

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q G ++   W+  ++  + + +  A V  AL++M AKCG +++A E+F  +  +D  S+ 
Sbjct: 382 QTGAIEQGKWIHEFIDENRIPID-AVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWT 440

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           S+I GL+++G   +A+ LF +M   G+ PD++ F  VL+ACSH GLVE+G +FF +M+  
Sbjct: 441 SIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRME 500

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA---WGALLGACKLYSDIEL 518
           Y I P  EHY C+VDLLGR G L  A EL+  +P E  A     +G+LL AC++Y ++E+
Sbjct: 501 YQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEM 560

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           GE VA +L + E  ++  + LL+NIYA ADRW DV  VR KMK+ G++K PGCSS+
Sbjct: 561 GERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSI 616


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/579 (36%), Positives = 338/579 (58%), Gaps = 46/579 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
           +L+L+  CK    L  +H+ +IK GL   +  ++  I    S+ +P    L+Y+ +VF+ 
Sbjct: 5   SLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEF--SVLSPHFDGLTYAISVFDS 62

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  PN  +WNT+ +G++ +S  +    ++V +I    VP+ YTFP ++KAC+   + REG
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREG 122

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH  V++ G D D++V TSLI +Y K      ARKVFD+   R+VVS+TA+I GYAS 
Sbjct: 123 QQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASN 182

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS--------- 266
           G +  A+ +FD +P +  VSWNALI G  + G+ + A +LF EM + NV           
Sbjct: 183 GYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVL 242

Query: 267 ------------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                                            +ID Y K G++ +A  LFE    +DV+
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVI 302

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ LI GY       EA+ +F +M      P+E  ++S++ AC+ +G +D+  W+  Y+
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYI 362

Query: 357 SRSHMDLSR-AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
            +    +S  + +  +L+DM AKCG+++ A ++F++M NR + S+ +MI G ++HG    
Sbjct: 363 DKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANP 422

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  +F RM  +G+ PD++ F  +L+ACSH G+++ G   F +M   Y I P  EHY CM+
Sbjct: 423 AFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMI 482

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLG +G  K A E++NSM ++P    W +LL ACK++ ++ELGE  A  L ++EP+N+G
Sbjct: 483 DLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSG 542

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SYVLLSNIYATA RW +V   R+ + ++G++K+PGCSS+
Sbjct: 543 SYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSI 581


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/542 (39%), Positives = 324/542 (59%), Gaps = 2/542 (0%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           PK       L+L++K K  + + Q+H+ +I   L  D    +  +    S    ++Y+  
Sbjct: 6   PKLQLKNPLLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAEL 65

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF +I  PN+F+ NT++K Y+++S        +  + R+  + D YT+P V+KAC  +  
Sbjct: 66  VFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCG 125

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + EG  +    ++ G   DVFV   LI +Y +  E   AR VFD   E+++VSW +M+ G
Sbjct: 126 LLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGG 185

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGL-VKIGDLRSARQLFDEMPERNVVSYTTM 270
           Y   G++  A+ +FD MPER  VSW+ +I G   K+G++  AR  FD MP R++VS+ +M
Sbjct: 186 YVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSM 245

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           IDGYAKVG+M  AR +F+    ++V++WS +I GYAQ+    EA+ +F  M  + ++PD 
Sbjct: 246 IDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDR 305

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             +V  +SACSQ+G LD   W+  Y+ R+ M L    V  ALVDM  KCG+ D A  +F 
Sbjct: 306 VSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIV-VQTALVDMYLKCGSRDEARRIFN 364

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
           +MP R+VVS+  MI GL ++G G++A+  F +M  E +  D++ F  VL ACSH  LV +
Sbjct: 365 SMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTE 424

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G   F  M+ VY + P  EHY C+VDLLGR G L     ++ SMP++P+A+ WG+LL AC
Sbjct: 425 GLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLAC 484

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ ++ L E+V  RL EL+  ++G YVL+SNIYA    W  +  +R  MKER ++K  G
Sbjct: 485 RIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIG 544

Query: 571 CS 572
            S
Sbjct: 545 RS 546


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/563 (39%), Positives = 339/563 (60%), Gaps = 42/563 (7%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH--FISLCHSLATPLSYSTAVFN 94
           L+S L+ I     Q    QVH+ I+  GL     ++A    JS  +  AT   Y  +V +
Sbjct: 2   LISKLSTISLSVKQAK--QVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHSVLH 59

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
              +P++F W   ++  +Q+ +F E F ++V++ R    P  +     +KAC+ +     
Sbjct: 60  HSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMG 119

Query: 155 GTAIHAAVIRWGVD---EDVFVGTSLIDLYGKRKEISCARKVFDEM-------------- 197
           G +IH  V ++G     + ++V T+L+D Y K  ++  ARK+FDEM              
Sbjct: 120 GLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 179

Query: 198 -----------------PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240
                            P+++V+SW +MI GYA  GD+ +A ++F  MPER+  SWNA+I
Sbjct: 180 YLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMI 239

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
            G V+ GD+ SAR  FD MP+ N VS+ TMI GY+K GD+ SA  LF+    +D++ ++A
Sbjct: 240 SGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNA 299

Query: 301 LISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +I+ YAQN +P EA+K+F++M +   NVQPDE  L S++SACSQ+G+L    W++SY+ R
Sbjct: 300 MIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRR 359

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             +++   H+  AL+D+ AKCG++D+A ELF  +  +D+V+Y +MI G  I+G    A+ 
Sbjct: 360 LGIEMD-GHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIK 418

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LFD M+   + P+ + F  +LTA +H GLVE+G+R F +M+  Y +VPS +HY  MVDLL
Sbjct: 419 LFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLL 477

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR G L+ A EL+ SMP++PHA  WGALL AC+L++++E GE+ A   FELEP   G   
Sbjct: 478 GRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXS 537

Query: 539 LLSNIYATADRWLDVCLVRSKMK 561
           LLSNIYA+ +RW DV  +R   K
Sbjct: 538 LLSNIYASGERWDDVKRLRKSPK 560


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 341/593 (57%), Gaps = 50/593 (8%)

Query: 26  SAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           S   +F K SC+     L+K CK   HL Q+ + I++ G  Q    +  F+  C   +  
Sbjct: 25  STSSHFTKKSCIF----LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIG 80

Query: 86  -LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVI 143
            L Y+  +FN I  P  F++N ++K +++N  F +   +F R +REE + PD +T+P V 
Sbjct: 81  NLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLF-RQLREEGLSPDNFTYPFVF 139

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           KA   +  VREG  ++  V++ G++ D +V  SL+D+Y +   +   R+VF+EMP+R+VV
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVS---------------------------- 235
           SW  +I GY       +A  VF  M ++S++                             
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259

Query: 236 -----------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
                       NAL+    K G L  AR++F++MP + V+ +T+M+ GY   G +  AR
Sbjct: 260 VREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEAR 319

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LFE +P RDVV W+A+I+GY Q  + D+AV +F +M  K V PD F LV+L++ C+Q+G
Sbjct: 320 ELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLG 379

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            L+   W+  Y+  + + +  A V  AL++M AKCG ++++ E+F  +  +D  S+ S+I
Sbjct: 380 TLEQGKWIHGYIDENKIMID-AVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSII 438

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            GL+++G   +A+ LF  M+  G+ PD++ F  VL+ACSH GLVE+G + F +M  VY I
Sbjct: 439 CGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQI 498

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGEL 521
            P  EHY C++DLLGR G L  A EL+   P    E     +GALL AC+ + ++E+GE 
Sbjct: 499 EPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGER 558

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VA RL  +E  ++  + LL+NIYA+ADRW DV  VR KMK+ G++K+PGCSS+
Sbjct: 559 VAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 611


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 329/538 (61%), Gaps = 10/538 (1%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           LI+      HL  +H+ +++ GL++D  L+   +    +     +YS  + ++   PN F
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNT-NYSFRILDQTKEPNIF 74

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           L+NT+++G   N  F E   I+  + +E   PD +TFP V+KAC+ VL    G  +H+ V
Sbjct: 75  LFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLV 134

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G + D FV  SLI+LY K   I  A KVFD++P++N  SWTA I GY  VG   EA 
Sbjct: 135 VKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAI 194

Query: 223 TVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGY 274
            +F  + E      + S   ++    + GDLRS   + + + E    RNV   T ++D Y
Sbjct: 195 DMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFY 254

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K G+M  ARS+F+   ++++V+WS++I GYA NG P EA+ +F  M ++ ++PD + +V
Sbjct: 255 GKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMV 314

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
            ++ +C+++G L+L +W  + ++ +   L  + +  AL+DM AKCG MDRA E+F  M  
Sbjct: 315 GVLCSCARLGALELGDWASNLINGNEF-LDNSVLGTALIDMYAKCGRMDRAWEVFRGMRK 373

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           +D V + + I GL++ GH + A+ LF +M   G+ PD   F  +L AC+H GLVE+G R+
Sbjct: 374 KDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRY 433

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           F +M+ V+ + P  EHY CMVDLLGR G L  A++L+ SMP+E +A  WGALLG C+L+ 
Sbjct: 434 FNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHR 493

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           D +L E+V  +L  LEP ++G+YVLLSNIYA + +W +   +RS M ERG++KIPG S
Sbjct: 494 DTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYS 551


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 330/558 (59%), Gaps = 46/558 (8%)

Query: 61  IKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSR 116
           IK GL   +  ++  +  C  + TP    L Y+ +VF  I  PN   WNT+++G++ +S 
Sbjct: 1   IKIGLHNTNYALSKLLDFC--ILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSD 58

Query: 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176
            I    ++V +I     P+ YTFP + K+C+   + +EG  IHA ++++G+  D+ V TS
Sbjct: 59  PISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTS 118

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           LI +Y +   +  A KVFD    R+VVS+TAMI GYAS G++ +A+ +FD +P +  VSW
Sbjct: 119 LISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSW 178

Query: 237 NALIGGLVKIGDLRSARQLFDEM------PER---------------------------- 262
           NA+I G  +IG  + A +LF+EM      P+                             
Sbjct: 179 NAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN 238

Query: 263 -----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                N+     +ID Y+K G+M  A  LFE    +DV++W+ LI GYA      EA+ +
Sbjct: 239 HGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLV 298

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL-SRAHVIAALVDMN 376
           F +M      P++  ++S++ AC+ +G +D+  W+  Y+ +    + +   +  +L+DM 
Sbjct: 299 FQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMY 358

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCGN++ A ++F+T+ N+ + S  +MI G ++HG    A  L  RM  +G+ PD++ F 
Sbjct: 359 AKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFV 418

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            +L+ACSH GL + G + F++M   Y I P  EHY CM+DLLGR+G  K A EL+NSM +
Sbjct: 419 GLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTM 478

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           EP    WG+LL ACK++ ++ELGEL+A +L ++EP+N GSYVLLSNIYAT+ RW DV  V
Sbjct: 479 EPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARV 538

Query: 557 RSKMKERGLRKIPGCSSL 574
           R+ + ++GL+K+PGCSS+
Sbjct: 539 RTLLNDKGLKKVPGCSSI 556


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 335/536 (62%), Gaps = 4/536 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L L+++C+ +  L Q+H+ I++  ++ + +++  FI+ C  L++         NR    +
Sbjct: 6   LFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHRGD 65

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIH 159
           TFL N+++K +    +  + FT++  L RE   VPD +TF ++ K C+  ++V EG   H
Sbjct: 66  TFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETH 125

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V++ G   D++V T+L+D+Y K   +  ARKVF++MP+R++VSWTA+I GY   GD+ 
Sbjct: 126 GHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMG 185

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A  +F LMP R + ++N LI G VK+GD+ SAR LFDEMPERNV+S+T+MI GY   GD
Sbjct: 186 NAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGD 245

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV-QPDEFILVSLMS 338
           + SAR LF+A P++++V+W+A+I GY QN QP EA+K+F ++ S  V +P+E  +VS++ 
Sbjct: 246 VLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILP 305

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           A + +G L+L  WV  ++ R  +D +  +V  +LVDM  KCG + +A ++F  +P ++  
Sbjct: 306 AIATLGALELGEWVHRFVQRKKLDAA-VNVCTSLVDMYLKCGEISKARKVFSEIPKKETA 364

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ ++I G +++G   +A+  F  M  EG+ P+++  T VL+ACSH GLVE+G   F+AM
Sbjct: 365 TWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAM 424

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
                + P  EHY C+VDLLGR G L  A  L+ SMP E +     +   AC   +D+  
Sbjct: 425 IE-SGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTR 483

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            + V N+   +EP N G YV++ N+YA  +RW DV  +   M+ RG +K  G S++
Sbjct: 484 AQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAI 539


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 346/567 (61%), Gaps = 40/567 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL--CHSLATPLSYSTAVFNRIVN 98
           +TL+KKC       Q+H+HI+  G      L+ H + L    +  T  +Y+ ++ + +  
Sbjct: 7   ITLMKKCSTVKQAKQIHAHILINGFTFLRPLLIHRMLLWDVTNYRTMANYAYSMLHHLHI 66

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P++F W  +++ +SQ   F E  +++V++ R    P  +     +K+C+ +  +  G +I
Sbjct: 67  PDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLCGMSI 126

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM--------------------- 197
           H  V  +G +  V+V T+L+DLY K  ++  ARKVFDEM                     
Sbjct: 127 HGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGNL 186

Query: 198 ----------PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIG 247
                     P ++V+SW +MI GYA  G++ +A T+F  MPER+  SWNA+I G +  G
Sbjct: 187 DEAQYLFSEIPGKDVISWNSMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFIDCG 246

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            L SAR+ FD MP RN VS+ TMI GY+K GD+ SAR LF+    +D+++++A+I+ YAQ
Sbjct: 247 SLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQ 306

Query: 308 NGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           N +P EA+++F+DM  ++  V PD+  L S++SACSQ+G+L+   W++S+++   + L  
Sbjct: 307 NSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDD 366

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            H+  AL+D+ AKCG++D+A ELF  +  RD+V+Y +MI G  I+G    A+ LF++ML+
Sbjct: 367 -HLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLA 425

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
           E + P+ V +T +LTA +H GLVE G++ F +M++ Y +VPS +HY  MVDL GR G+L 
Sbjct: 426 ECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKD-YGLVPSIDHYGIMVDLFGRAGYLD 484

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            AY+L+ +MP++P+A  WGALL AC+L++++ELGE+      +LE    G   LLS+IYA
Sbjct: 485 EAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCSLLSSIYA 544

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCS 572
           T ++W D   +R  M+    +   GCS
Sbjct: 545 TVEKWDDAKKLRKGMEG---KDFTGCS 568



 Score = 38.5 bits (88), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L S ++   +     H   + SH+   G+  D  L    I L ++    +  +  
Sbjct: 329 PDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDDHLATALIDL-YAKCGSIDKAYE 387

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +   ++ ++ G   N +  +   +F +++ E   P+  T+  ++ A +H   
Sbjct: 388 LFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGL 447

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIV 210
           V +G     ++  +G+   +     ++DL+G+   +  A K+   MP + N   W A+++
Sbjct: 448 VEKGYQCFNSMKDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLL 507


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/538 (38%), Positives = 343/538 (63%), Gaps = 6/538 (1%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L  + KC     + Q+H+ II++ L QD  +    IS   SL    + +  VFN++  PN
Sbjct: 23  LQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISAL-SLCRQTNLALRVFNQVQEPN 81

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             L N+L++ ++ NS+  + F +F  + R     D +T+P ++KACS +  +     +H 
Sbjct: 82  VHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHN 141

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISC--ARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            + + G+  D++V  +LID Y +   +    A K+F++M ER+ VSW +M+ G    G+L
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
            +A+ +FD MP+R  +SWN ++ G  +  ++  A +LF++MPERN VS++TM+ GY+K G
Sbjct: 202 RDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAG 261

Query: 279 DMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           DM  AR +F+  P   ++VV W+ +I+GYA+ G   EA K+   M +  ++ D    +S+
Sbjct: 262 DMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISI 321

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           ++AC++ G L L     S + +S+++ S A V+ AL+DM AKCG++ +A ++F  MP +D
Sbjct: 322 LAACAESGLLSLGMRAHSIIKKSNLN-SNASVLNALLDMYAKCGSLKKAFDVFNDMPKKD 380

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           +VS+ +M+ GL +HGHG++A+ LF RM  EG+ PD+V F  VL +C+H GL+++G  +F 
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFY 440

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           +M+ VY +VP  EHY C+VDLLGR G LK A +++ +MP+EP+   WGALLGAC++++++
Sbjct: 441 SMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEV 500

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++ + V + L +L+P + G+Y LLSNIYA A+ W  V  +RSKMK  G+ K  G SS+
Sbjct: 501 DIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/541 (39%), Positives = 340/541 (62%), Gaps = 15/541 (2%)

Query: 44  IKKCKLQT--HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT----PLS---YSTAVFN 94
           I +C+ ++   L Q+H+ I++  L  + +L+  F++ C SLA     PL+   ++   FN
Sbjct: 22  ILQCRTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAIINHARRFFN 81

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA---VPDKYTFPLVIKACSHVLS 151
                +TFL N+++  +    +F + FT+F R +R +A    PD YTF  ++K C+  ++
Sbjct: 82  ATHTRDTFLCNSMIAAHFAARQFSQPFTLF-RDLRRQAPPFTPDGYTFTALVKGCATRVA 140

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
             EGT +H  V++ GV  D++V T+L+D+Y K   +  ARKVFDEM  R+ VSWTA+IVG
Sbjct: 141 TGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVG 200

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           YA  GD+ EA+ +FD M +R  V++NA+I G VK+G +  AR+LF+EM ERNVVS+T+M+
Sbjct: 201 YARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMV 260

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GY   GD+ +A+ +F+  P+++V  W+A+I GY QN +  +A+++F +M + +V+P+E 
Sbjct: 261 SGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEV 320

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            +V ++ A + +G LDL  W+  +  R  +D S A +  AL+DM AKCG + +A   FE 
Sbjct: 321 TVVCVLPAVADLGALDLGRWIHRFALRKKLDRS-ARIGTALIDMYAKCGEITKAKLAFEG 379

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  R+  S+ ++I G +++G  ++A+ +F RM+ EG  P+EV    VL+AC+H GLVE+G
Sbjct: 380 MTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEG 439

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
            R+F AM+  + I P  EHY CMVDLLGR G L  A  L+ +MP + +     + L AC 
Sbjct: 440 RRWFNAMER-FGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACG 498

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
            ++D+   E V   + +++   AG+YV+L N+YAT  RW DV  V+  MK+RG  K   C
Sbjct: 499 YFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVAC 558

Query: 572 S 572
           S
Sbjct: 559 S 559


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/530 (40%), Positives = 322/530 (60%), Gaps = 10/530 (1%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
             L  +H+ +++  L+QD+ L+ + I  C       +YS  VF+++  PN FLWNT+++G
Sbjct: 30  NQLKHIHARLLRLHLDQDNYLL-NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
                 F +   ++  +     +P+ +T P V+KAC+  L VR G  IH+ +++ G D D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           VFV TSL+ LY K      A KVFD++P++NVVSWTA+I GY S G   EA   F  + E
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208

Query: 231 RS----NVSWNALIGGLVKIGDLRSA----RQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
                 + S   ++    ++GD  S     R + D    RNV   T+++D Y K G++  
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  +F A P++D+V+WS +I GYA NG P +A+ +F  M S+N++PD + +V ++SAC+ 
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G LDL  W  S + R+   LS   +  AL+DM +KCG++ +A E+F  M  +D V + +
Sbjct: 329 LGALDLGIWASSLMDRNEF-LSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNA 387

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           M+ GLS++GH +   SLF  +   G+ PDE  F  +L  C+H G V +G +FF  M+ V+
Sbjct: 388 MMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVF 447

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
           ++ PS EHY CMVDLLGR G L  A++L+N+MP++P+A  WGALLG CKL+ D  L E V
Sbjct: 448 SLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQV 507

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +L ELEP N+G+YV LSNIY+   RW +   +RS MKE+ ++KI  CS
Sbjct: 508 LKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACS 557


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/530 (40%), Positives = 322/530 (60%), Gaps = 10/530 (1%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
             L  +H+ +++  L+QD+ L+ + I  C       +YS  VF+++  PN FLWNT+++G
Sbjct: 30  NQLKHIHARLLRLHLDQDNYLL-NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
                 F +   ++  +     +P+ +T P V+KAC+  L VR G  IH+ +++ G D D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           VFV TSL+ LY K      A KVFD++P++NVVSWTA+I GY S G   EA   F  + E
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208

Query: 231 RS----NVSWNALIGGLVKIGDLRSA----RQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
                 + S   ++    ++GD  S     R + D    RNV   T+++D Y K G++  
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  +F A P++D+V+WS +I GYA NG P +A+ +F  M S+N++PD + +V ++SAC+ 
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G LDL  W  S + R+   LS   +  AL+DM +KCG++ +A E+F  M  +D V + +
Sbjct: 329 LGALDLGIWASSLMDRNEF-LSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNA 387

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           M+ GLS++GH +   SLF  +   G+ PDE  F  +L  C+H G V +G +FF  M+ V+
Sbjct: 388 MMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVF 447

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
           ++ PS EHY CMVDLLGR G L  A++L+N+MP++P+A  WGALLG CKL+ D  L E V
Sbjct: 448 SLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQV 507

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +L ELEP N+G+YV LSNIY+   RW +   +RS MKE+ ++KI  CS
Sbjct: 508 LKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACS 557


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/550 (41%), Positives = 332/550 (60%), Gaps = 30/550 (5%)

Query: 44  IKKC-----KLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIV 97
           +KKC     K      Q H  +++ GL QD  L+   + S  H  AT   Y+T VF +  
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAAT--QYATVVFAQTP 62

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS---HVLSVRE 154
           +PN FL+NTL++G   N  F +  +++  + +    PD +TFP V+KAC+   H   V  
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHV-- 120

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G ++H+ VI+ G D DVFV T L+ LY K   ++ ARKVFDE+PE+NVVSWTA+I GY  
Sbjct: 121 GLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIE 180

Query: 215 VGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVS 266
            G   EA  +F  + E      + +   ++    ++GDL S R +   M E     NV  
Sbjct: 181 SGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFV 240

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
            T+++D YAK G M  AR +F+   ++DVV WSALI GYA NG P EA+ +F +M  +NV
Sbjct: 241 ATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENV 300

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD----LSRAHVIAALVDMNAKCGNM 382
           +PD + +V + SACS++G L+L NW     +R  MD    LS   +  AL+D  AKCG++
Sbjct: 301 RPDCYAMVGVFSACSRLGALELGNW-----ARGLMDGDEFLSNPVLGTALIDFYAKCGSV 355

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
            +A E+F+ M  +D V + ++I GL++ GH   A  +F +M+  G+ PD   F  +L  C
Sbjct: 356 AQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGC 415

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           +H GLV+DG R+F  M +V+++ P+ EHY CMVDL  R G L  A +L+ SMP+E ++  
Sbjct: 416 THAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIV 475

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           WGALLG C+L+ D +L E V  +L ELEP N+G YVLLSNIY+ + RW +   +RS + +
Sbjct: 476 WGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQ 535

Query: 563 RGLRKIPGCS 572
           +G++K+PGCS
Sbjct: 536 KGMQKLPGCS 545


>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/423 (47%), Positives = 290/423 (68%), Gaps = 7/423 (1%)

Query: 155 GTAIHAAVIRWGVD---EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           G +IH  V ++G     + ++V T+L+D Y K  ++  ARK+FDEM ERNVVSW +M+ G
Sbjct: 3   GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 62

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   GD+ +A ++F  MPER+  SWNA+I G V+ GD+ SAR  FD MP++N VS+ TMI
Sbjct: 63  YLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMI 122

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPD 329
            GY+K GD+ SA  LF+    +D++ ++A+I+ YAQN +P+EA+ +F++M +   NVQPD
Sbjct: 123 SGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPD 182

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           E  L S++SACSQ+G+L    W++SY+ R  +++   H+  AL+D+ AKCG++D+A ELF
Sbjct: 183 EMTLASVISACSQLGDLRFGPWIESYMRRLGIEMD-GHLATALLDLYAKCGSIDKAYELF 241

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             +  +D+V+Y +MI G  I+G    A+ LFD M+   + P+ + F  +LTA +H GLVE
Sbjct: 242 HGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVE 301

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G+R F +M+  Y +VPS +HY  MVDL GR G L+ A EL+ SMP++PHA  WGALL A
Sbjct: 302 EGYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLA 360

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+L++++E GE+ A   FELEP   G   LLSNIYA+ +RW DV  +R   KE+G  KIP
Sbjct: 361 CRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIP 420

Query: 570 GCS 572
           GCS
Sbjct: 421 GCS 423



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 11/222 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE--EAVPDKYTFPLVIKACSHV 149
           +F+++   +  L+N ++  Y+QNSR  E   +F  ++       PD+ T   VI ACS +
Sbjct: 137 LFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQL 196

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +R G  I + + R G++ D  + T+L+DLY K   I  A ++F  + ++++V++TAMI
Sbjct: 197 GDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMI 256

Query: 210 VGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           +G    G  ++A  +FD M +     +++++  L+      G +    + F  M + N+V
Sbjct: 257 LGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLV 316

Query: 266 ----SYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALI 302
                Y  M+D + + G +  A  L ++ P +     W AL+
Sbjct: 317 PSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALL 358


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 322/542 (59%), Gaps = 2/542 (0%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           PK       L+L++  K  + + Q+H+ +I   L  D    +  +    S    ++Y+  
Sbjct: 6   PKLQLKNPLLSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAEL 65

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF +I  PN+F+ NT++K Y+++S        +  + ++  + D YT+P V+KAC  +  
Sbjct: 66  VFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCG 125

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + EG  +    ++ G   DVFV   LI +Y +  E   AR VFD   E+++VSW +M+ G
Sbjct: 126 LLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGG 185

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGL-VKIGDLRSARQLFDEMPERNVVSYTTM 270
           Y   G++  A+ +FD MPER  VSW+ +I G   K+G++  AR  FD MP R++VS+ +M
Sbjct: 186 YVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSM 245

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           IDGYAKVG+M  AR +F+    ++V++WS +I GYA +    EA+ +F  M  + ++PD 
Sbjct: 246 IDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDR 305

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             +V  +SACSQ+G LD   W+  Y+ R+ M L    V  ALVDM  KCG+ D A  +F 
Sbjct: 306 VSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIV-VQTALVDMYLKCGSXDEARXIFN 364

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
           +MP R+VVS+  MI GL ++G G++A+  F +M  E +  D++ F  VL ACSH  LV +
Sbjct: 365 SMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTE 424

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G   F  M+ VY + P  EHY C+VDLLGR G L     ++ SMP++P+A+ WG+LL AC
Sbjct: 425 GLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLAC 484

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ ++ L E+V  RL EL+  ++G YVL+SNIYA    W  +  +R  MKER ++K  G
Sbjct: 485 RIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIG 544

Query: 571 CS 572
            S
Sbjct: 545 RS 546


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 340/579 (58%), Gaps = 46/579 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
           +L+L+  CK    L  +H+ +IK GL   +  ++  I  C  + +P    L Y+ +VF  
Sbjct: 5   SLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFC--VLSPHFDGLPYAISVFET 62

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  PN  +WNT+ +G++ +S  +    ++V +I    +P+ YTFP ++K+C+   + REG
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREG 122

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH  V++ G D D++V TSLI +Y +   +  ARKVFD+   R+VVS+TA+I GYAS 
Sbjct: 123 QQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASK 182

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-------VSYT 268
           G +  A+ +FD +P +  VSWNA+I G  + G+ + A +LF EM + NV       VS  
Sbjct: 183 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 242

Query: 269 T--------------------------------MIDGYAKVGDMTSARSLFEAAPDRDVV 296
           +                                +ID Y K G++ +A  LFE    +DV+
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVI 302

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ LI GY       EA+ +F +M      P++  ++S++ AC+ +G +++  W+  Y+
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYI 362

Query: 357 SRSHMDLSRAHV-IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           ++    ++ A     +L+DM AKCG+++ A ++F+++ NR + S+ +MI G ++HG    
Sbjct: 363 NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANA 422

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  +F RM    + PD++ F  +L+ACSH G+++ G   F +M+  Y I P  EHY CM+
Sbjct: 423 AFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMI 482

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLG +G  K A E++N+M +EP    W +LL ACK+Y+++ELGE  A  L ++EP+N G
Sbjct: 483 DLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPG 542

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SYVLLSNIYATA RW +V  +R+ + ++G++K+PGCSS+
Sbjct: 543 SYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSI 581


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 337/574 (58%), Gaps = 41/574 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT-PLSYSTAVFNRIV 97
           S ++L++KCK    L Q+HSH IK GL  D       I+ C +  +  + Y+  VF+ I 
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P  F+WNT++KGYS+ +      ++++ ++     PD++TFP ++K  +  ++++ G  
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKV 128

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +    ++ G D ++FV  + I ++   + +  ARKVFD      VV+W  M+ GY  V  
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQ 188

Query: 218 LVEAKTVFDLMP---------------------------------------ERSNVSWNA 238
             ++K +F  M                                        ER+ +  N 
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENV 248

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           LI      G++  A+ +FD M  R+V+S+T+++ G+A +G +  AR  F+  P+RD V+W
Sbjct: 249 LIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSW 308

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+I GY +  +  EA+ +F +M   NV+PDEF +VS+++AC+ +G L+L  WV +Y+ +
Sbjct: 309 TAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDK 368

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
           + +  +   V  AL+DM  KCGN+ +A ++F+ M ++D  ++ +MI GL+I+GHG +A++
Sbjct: 369 NSIK-NDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALA 427

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           +F  M+   +TPDE+ +  VL AC+H G+VE G  FF +M   + I P+  HY CMVDLL
Sbjct: 428 MFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLL 487

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR G L+ A+E++ +MPV+P++  WG+LLGAC+++ +++L E+ A ++ ELEP+N   YV
Sbjct: 488 GRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYV 547

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LL NIYA   RW ++  VR  M ERG++K PGCS
Sbjct: 548 LLCNIYAACKRWENLRQVRKLMMERGIKKTPGCS 581


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/532 (39%), Positives = 322/532 (60%), Gaps = 2/532 (0%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL   C      +Q+H+ +I  GL Q        +    S    + ++ ++F  +  P+ 
Sbjct: 64  TLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDA 123

Query: 102 FLWNTLLKGY-SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           F+ NT+++ Y + N  +  +   + +++R+   P+ YTFPL++K C  + S+ +G  IHA
Sbjct: 124 FICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHA 183

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            ++++G + D+FV  SLI +Y     I  AR +F+     ++V+W +MI GY   G++  
Sbjct: 184 RILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGA 243

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A+ +F+ MPER   SWN++I G V  GD+ +A  LF++MP R++VS+  MIDGYA+V +M
Sbjct: 244 ARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNM 303

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A  LF   P R+VV+W+ +++ Y +    DE +++F  M  + + P+E  LVS+++AC
Sbjct: 304 EIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTAC 362

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           + +G LD   W+ SY+  + +      +  AL+ M AKCG MD A ++F+ M NR VVS+
Sbjct: 363 AHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSW 422

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            SMI G  +HG   +A+ +F  M   G  P++  F  VL+AC+H G++ +GW +F+ M+ 
Sbjct: 423 NSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRR 482

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I P  EHY CMVDLLGR G +K   EL+  MP+E   + WGALL AC+ +S+ EL E
Sbjct: 483 AYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAE 542

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +VA RL ELEP++ G Y+LLSNIYA   +W DV +VR  MKERGL K  G S
Sbjct: 543 IVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFS 594


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/547 (39%), Positives = 320/547 (58%), Gaps = 42/547 (7%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATP 85
           +FP P  L    +  +     + LHQ H+HI+K GL         L+A   +  H+ A P
Sbjct: 4   SFPPPPIL----SFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIP 59

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
             Y+ ++F+RI NPN+++WNT+++ Y+ +       TIF +++    +PDKYTF   +K+
Sbjct: 60  --YAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKS 117

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C     V EG  IH  V++ G+ +D+F+  +LI LY                        
Sbjct: 118 CGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLY------------------------ 153

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
                  AS G + +A+ + D M ER  VSWNAL+    + G +  A  LFDEM ERNV 
Sbjct: 154 -------ASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVE 206

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+  MI GY  VG +  AR +F   P ++VV+W+A+I+GY+  G+  E + +F DM    
Sbjct: 207 SWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG 266

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V+PD   LVS++SAC+ VG L    WV +Y+ ++ + +    V  ALVDM +KCG++++A
Sbjct: 267 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISID-GFVATALVDMYSKCGSIEKA 325

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            E+F +   +D+ ++ S+I GLS HG G+ A+ +F  ML EG  P+EV F  VL+ACS  
Sbjct: 326 LEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRA 385

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GL+++G   F  M +V+ I P+ EHY CMVDLLGR G L+ A EL+  MP +  +  W +
Sbjct: 386 GLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWES 445

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+ + ++EL E VA +L EL PQ + S+V LSN+YA+  RW DV  VR KM+ +G+
Sbjct: 446 LLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGV 505

Query: 566 RKIPGCS 572
           RK PGCS
Sbjct: 506 RKDPGCS 512


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/519 (40%), Positives = 325/519 (62%), Gaps = 14/519 (2%)

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
           GL  D+ L+ + I  C    +  +Y+  +F++I  PN FLWNT+++G   N  F +    
Sbjct: 41  GLCHDNYLL-NMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEF 99

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183
           +  +  E  +P+ +TFP V+KAC+ +L ++ G  IH  V++ G D DVFV TSL+ LY K
Sbjct: 100 YGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAK 159

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWN 237
              +  A KVFD++P++NVVSWTA+I GY  VG   EA  +F      +L P+   +   
Sbjct: 160 CGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIV-- 217

Query: 238 ALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
            ++    ++GDL S   +   + E    RNV   T+++D YAK G+M  ARS+F+  P++
Sbjct: 218 RVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK 277

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D+V+W A+I GYA NG P EA+ +F  M  +NV+PD + +V ++SAC+++G L+L  WV 
Sbjct: 278 DIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVS 337

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
             + R+   L    +  AL+D+ AKCG+M RA E+F+ M  +D V + ++I GL+++G+ 
Sbjct: 338 GLVDRNEF-LYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           + +  LF ++   G+ PD   F  +L  C+H GLV++G R+F +M   +++ PS EHY C
Sbjct: 397 KISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 456

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLLGR G L  A++L+ +MP+E +A  WGALLGAC+++ D +L EL   +L ELEP N
Sbjct: 457 MVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWN 516

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +G+YVLLSNIY+   +W +   VR  M E+ ++K PGCS
Sbjct: 517 SGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCS 555


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/534 (40%), Positives = 321/534 (60%), Gaps = 17/534 (3%)

Query: 50  QTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           + HL+Q+H+ ++  GL +   LV  F++   ++   + Y+  VF+    P+ FLWN +++
Sbjct: 84  KRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGE-IGYARKVFDEFPEPSVFLWNAIIR 142

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           GYS ++ F +   ++ R+      PD +T P V+KACS V  +  G  +H  + R G + 
Sbjct: 143 GYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFES 202

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           DVFV   L+ LY K   +  AR VF+ + +RN+VSWT+MI GY   G  +EA  +F  M 
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMR 262

Query: 230 ERS-NVSWNALIGGL---VKIGDLRSARQLFD-------EMPERNVVSYTTMIDGYAKVG 278
           +R+    W AL+  L     + DL   + +         E     ++S T M   YAK G
Sbjct: 263 QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAM---YAKCG 319

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  ARS F+     +V+ W+A+ISGYA+NG  +EAV +F +M SKN++ D   + S + 
Sbjct: 320 QVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAIL 379

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+QVG+LDL+ W+  Y++++    +   V  AL+DM AKCG++D A E+F+   ++DVV
Sbjct: 380 ACAQVGSLDLAKWMGDYINKTEYR-NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVV 438

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + +MI G  +HG G+ A+ LF  M   G+ P++V F  +LTAC+H GLVE+GW  F +M
Sbjct: 439 VWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM 498

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           +  Y I    +HYAC+VDLLGR+GHL  AY+ + +MP+EP  S WGALLGACK+Y  + L
Sbjct: 499 K-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTL 557

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           GE  A +LF L+P N G YV LSN+YA++  W  V  VR  M+E+GL K  G S
Sbjct: 558 GEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYS 611



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 13/309 (4%)

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           H +  R    IHA ++  G+ E  F+ T  ++      EI  ARKVFDE PE +V  W A
Sbjct: 80  HSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNA 139

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALI--------GG--LVKIGDLRSARQLFD 257
           +I GY+S     +A  ++  M + S V+ +            G  ++++G  R   Q+F 
Sbjct: 140 IIRGYSSHNFFGDAIEMYSRM-QASGVNPDGFTLPCVLKACSGVPVLEVGK-RVHGQIFR 197

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
              E +V     ++  YAK G +  AR +FE   DR++V+W+++ISGY QNG P EA++I
Sbjct: 198 LGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRI 257

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M  +NV+PD   LVS++ A + V +L+    +   + +  ++     ++ +L  M A
Sbjct: 258 FGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEF-EPDLLISLTAMYA 316

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG +  A   F+ M   +V+ + +MI G + +G+  +AV LF  M+S+ +  D +    
Sbjct: 317 KCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRS 376

Query: 438 VLTACSHVG 446
            + AC+ VG
Sbjct: 377 AILACAQVG 385


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 306/484 (63%), Gaps = 30/484 (6%)

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +L+ YS      +V  ++ ++      PD + +P++IK+         G   HA V++ G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLG 55

Query: 167 VDEDVFVGTSLIDLYGKR--------------KEISCARKVFDEMPERNVVSWTAMIVGY 212
              D FV  ++ID+Y ++              +    A+ +FD MPERNV++WTAM+ GY
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM--PERNVVSYTTM 270
           A V DL  A+  FD MPERS VSWNA++ G  + G    A +LFDEM    RN V++  M
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAM 175

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPD 329
           I  Y +VGD+ SAR LF   P R+VV W+++I+GYAQNGQ   A+++F +M + K + PD
Sbjct: 176 ISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 235

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAEL 388
           E  +VS++SAC  +G L+L NWV  +L+ + + LS   H   A++ M ++CG+M+ A  +
Sbjct: 236 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH--NAMIFMYSRCGSMEDAKRV 293

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+ M  RDVVSY ++I G + HGHG +A++L   M   G+ PD V F  VLTACSH GL+
Sbjct: 294 FQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLL 353

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           E+G + FE++++     P+ +HYACMVDLLGR G L+ A   +  MP+EPHA  +G+LL 
Sbjct: 354 EEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLN 408

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           A +++  +ELGEL AN+LFELEP N+G+++LLSNIYA+A RW DV  +R  MK+ G++K 
Sbjct: 409 ASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKT 468

Query: 569 PGCS 572
            G S
Sbjct: 469 TGWS 472



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 57/368 (15%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN +L GY+QN    E   +F  ++                                   
Sbjct: 139 WNAMLSGYAQNGLAEEALRLFDEML----------------------------------- 163

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
             G   +     ++I  Y +  ++  ARK+F+ MP RNVV+W +MI GYA  G    A  
Sbjct: 164 --GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 224 VFDLM--------PERSNVSWNALIG--GLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
           +F  M         E + VS  +  G  G +++G+    R L +   + ++  +  MI  
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNW-VVRFLTENQIKLSISGHNAMIFM 280

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y++ G M  A+ +F+    RDVV+++ LISG+A +G   EA+ + S M    ++PD    
Sbjct: 281 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 340

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           + +++ACS  G L+    V   +    +D       A +VD+  + G ++ A    E MP
Sbjct: 341 IGVLTACSHAGLLEEGRKVFESIKDPAIDH-----YACMVDLLGRVGELEDAKRTMERMP 395

Query: 394 NRDVVS-YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC-SHVGLVEDG 451
                  Y S++    IH          +++    L PD     I+L+   +  G  +D 
Sbjct: 396 MEPHAGVYGSLLNASRIHKQVELGELAANKLFE--LEPDNSGNFILLSNIYASAGRWKDV 453

Query: 452 WRFFEAMQ 459
            R  EAM+
Sbjct: 454 ERIREAMK 461



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 5/211 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIK 144
           L  +  +FN +   N   WN+++ GY+QN +      +F  +I  ++  PD+ T   VI 
Sbjct: 185 LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 244

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC H+ ++  G  +   +    +   +    ++I +Y +   +  A++VF EM  R+VVS
Sbjct: 245 ACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 304

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           +  +I G+A+ G  VEA  +   M E       V++  ++      G L   R++F+ + 
Sbjct: 305 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 364

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           +  +  Y  M+D   +VG++  A+   E  P
Sbjct: 365 DPAIDHYACMVDLLGRVGELEDAKRTMERMP 395



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 13/170 (7%)

Query: 69  HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI 128
           H+ +    S C S+      +  VF  +   +   +NTL+ G++ +   +E   +   + 
Sbjct: 274 HNAMIFMYSRCGSMED----AKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK 329

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
                PD+ TF  V+ ACSH   + EG  +  ++    +D        ++DL G+  E+ 
Sbjct: 330 EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHY----ACMVDLLGRVGELE 385

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVE-----AKTVFDLMPERSN 233
            A++  + MP          ++  + +   VE     A  +F+L P+ S 
Sbjct: 386 DAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSG 435


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 344/590 (58%), Gaps = 45/590 (7%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC--HS 81
           + SA  +F  P+  L  ++L++ C+    L QVH   IKKGL  +  L    ++ C  H 
Sbjct: 7   TSSALKSFSPPTHPL--ISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHE 64

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
                 Y+  +F+ I  PN F+WNT+++GYS+        ++++ ++R    PD+YTFP 
Sbjct: 65  YG-DFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 123

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           + K  +  +++  G  +H  V++ G+  +VFV T+L+ +Y    ++  AR VFD  P+ +
Sbjct: 124 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 183

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPER------------------------------ 231
           V++W  +I  Y  VG   E++ +F +M ++                              
Sbjct: 184 VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS 243

Query: 232 --------SN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
                   SN V  NA+I      G++ SA  +F  M  R+++S+TT++ G+  +G++  
Sbjct: 244 YVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV 303

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR+ F+  P++D V+W+A+I GY ++ +  EA+++F +M + NV+PDEF +VS+++AC+ 
Sbjct: 304 ARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAH 363

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L+L  W+ +Y+ R+ +  +   V  AL+DM  KCG++D+A  +F  M  RD  ++ +
Sbjct: 364 LGALELGEWIRTYIDRNKIK-NDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTA 422

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI GL+++GHG +A+ +F  ML   + PDE+ +  VL+AC+H GLV+ G ++F  M + +
Sbjct: 423 MIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQH 482

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P+  HY C+VDLL R G LK AYE++ +MP++ ++  WGALL  C++Y + ++ E+V
Sbjct: 483 GIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMV 542

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             ++ ELEP N   YVLL NIYA   RW D+  +R  M ++G++K PGCS
Sbjct: 543 VKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCS 592


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 344/590 (58%), Gaps = 45/590 (7%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC--HS 81
           + SA  +F  P+  L  ++L++ C+    L QVH   IKKGL  +  L    ++ C  H 
Sbjct: 28  TSSALKSFSPPTHPL--ISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHE 85

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
                 Y+  +F+ I  PN F+WNT+++GYS+        ++++ ++R    PD+YTFP 
Sbjct: 86  YGD-FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPF 144

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           + K  +  +++  G  +H  V++ G+  +VFV T+L+ +Y    ++  AR VFD  P+ +
Sbjct: 145 LFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKAD 204

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPER------------------------------ 231
           V++W  +I  Y  VG   E++ +F +M ++                              
Sbjct: 205 VITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS 264

Query: 232 --------SN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
                   SN V  NA+I      G++ SA  +F  M  R+++S+TT++ G+  +G++  
Sbjct: 265 YVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV 324

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR+ F+  P++D V+W+A+I GY ++ +  EA+++F +M + NV+PDEF +VS+++AC+ 
Sbjct: 325 ARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAH 384

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L+L  W+ +Y+ R+ +  +   V  AL+DM  KCG++D+A  +F  M  RD  ++ +
Sbjct: 385 LGALELGEWIRTYIDRNKIK-NDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTA 443

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI GL+++GHG +A+ +F  ML   + PDE+ +  VL+AC+H GLV+ G ++F  M + +
Sbjct: 444 MIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQH 503

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P+  HY C+VDLL R G LK AYE++ +MP++ ++  WGALL  C++Y + ++ E+V
Sbjct: 504 GIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMV 563

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             ++ ELEP N   YVLL NIYA   RW D+  +R  M ++G++K PGCS
Sbjct: 564 VKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCS 613


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 338/579 (58%), Gaps = 46/579 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
           +L+L+  CK    L  +H+ +IK GL   +  ++  +  C  + +P    L Y+ +VF+ 
Sbjct: 5   SLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXC--VLSPHFDGLPYAISVFDT 62

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  P   +WNT+ +G++ +S  +    ++V ++    +P+ YTFP ++K+C+   + +EG
Sbjct: 63  IQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEG 122

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             +H  V+++G D D+++ TSLI +Y +   +  A+KV D+   R+VVS+TA+I GYAS 
Sbjct: 123 QQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASR 182

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS--------- 266
           G +  A  +FD +P +  VSWNA I G  + G+ + A +LF +M + NV           
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVL 242

Query: 267 ------------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                                            +ID Y+K G++ +A  LF+   ++DV+
Sbjct: 243 SACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVI 302

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ LI GY       EA+ +F DM     +P++  ++S++SAC+ +G +D+  W+  Y+
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYI 362

Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
            +    ++ A  +  +L+DM AKCG+++ A ++F++M NR + S+ +MI G ++HG    
Sbjct: 363 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANA 422

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  +F RM   G+ PD++ F  +L+ACSH G+++ G   F +M   Y ++P  EHY CM+
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMI 482

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DL G +G  K A +++N+M +EP    W +LL ACK++ ++ELGE  A  L ++EP+N G
Sbjct: 483 DLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPG 542

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SYVLLSNIYATA+RW +V   R+ + ++G++K+PGCSS+
Sbjct: 543 SYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSI 581


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 339/577 (58%), Gaps = 46/577 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+L++KCK  + L Q+ S ++  GL +D    +  I+ C  S    L Y T +     NP
Sbjct: 10  LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNP 69

Query: 100 NTFLWNTLLKGY--SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGT 156
           NTF WN  ++G+  S+N R  E   ++ R+++ +   PD YT+PL+ KAC+ +  +R G+
Sbjct: 70  NTFSWNVAIRGFLDSENPR--EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGS 127

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            I   V+  G D D+FV  ++I L     ++  ARK+FD+   R++VSW +MI GY   G
Sbjct: 128 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 187

Query: 217 DLVEAKTVF--------------------------DLMPERSNVSW-------------N 237
              EA   +                          DL   R +  +             N
Sbjct: 188 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 247

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           AL+   +K G+L SAR+LFD M  + +VS+TTM+ GYA+ G +  A  LF+  PD+DVV 
Sbjct: 248 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVP 307

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+A+I GY    +  EA+ +F++M + N+ PDE  +VS +SACSQ+G LD+  W+  Y+ 
Sbjct: 308 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIE 367

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +  + L+ A +  AL+DM AKCG + +A ++F+ +P R+ +++ ++I GL++HG+   A+
Sbjct: 368 KHELSLNVA-LGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 426

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           + F  M+   + PDEV F  +L+AC H GLVE+G ++F  M + + + P  +HY+CMVDL
Sbjct: 427 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 486

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR G L+ A EL+ SMP+E  A  WGAL  AC+++ ++ +GE  A++L +++P ++G Y
Sbjct: 487 LGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIY 546

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VLL+N+Y  A+ W +    R  M++RG+ K PGCSS+
Sbjct: 547 VLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSI 583



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 205/452 (45%), Gaps = 62/452 (13%)

Query: 22  NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQD---HSLVAHF 75
            C  + P N+  P        L K C   + +    ++  H++  G + D    + V H 
Sbjct: 99  QCDGTKPDNYTYP-------LLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHL 151

Query: 76  ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
           +  C  L      +  +F++    +   WN+++ GY +     E    +  +  E   PD
Sbjct: 152 LVSCGDLDG----ARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPD 207

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
           + T   V+ +C+ +  +  G   H  +   G+   V +  +L+D+Y K   +  ARK+FD
Sbjct: 208 EVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFD 267

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255
            M  + +VSWT M+VGYA  G L  A  +FD MP++  V WNA+IGG V     + A  L
Sbjct: 268 SMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALAL 327

Query: 256 FDEM------PER---------------------------------NVVSYTTMIDGYAK 276
           F+EM      P+                                  NV   T +ID YAK
Sbjct: 328 FNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAK 387

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G +T A  +F+  P R+ + W+A+ISG A +G    A+  FS+M   +V PDE   + L
Sbjct: 388 CGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGL 447

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMP-N 394
           +SAC   G ++      S +S S  +LS +    + +VD+  + G ++ A EL ++MP  
Sbjct: 448 LSACCHGGLVEEGRKYFSQMS-SKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIE 506

Query: 395 RDVVSYCSMIKGLSIHGH---GRQAVSLFDRM 423
            D V + ++     IHG+   G +A S   +M
Sbjct: 507 ADAVVWGALFFACRIHGNVLMGERAASKLLQM 538



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 194/419 (46%), Gaps = 48/419 (11%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL--YGKRKEISCARKVFDE 196
           F  +++ C  +  +++   I + ++  G+ ED F  + LI      + +++     +   
Sbjct: 9   FLSLLEKCKSISQLKQ---IQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFN 65

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-----PERSNVSWNALIGGLVKIGDLRS 251
               N  SW   I G+    +  EA  ++  +      +  N ++  L     ++  +R 
Sbjct: 66  TRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRM 125

Query: 252 ARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
             ++   +     + ++     +I      GD+  AR +F+ +  RD+V+W+++I+GY +
Sbjct: 126 GSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVR 185

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
            G   EA+  + +M  + ++PDE  ++ ++S+C+Q+ +LDL      Y+  + + L+   
Sbjct: 186 RGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT-VP 244

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG---------------- 411
           +  AL+DM  KCGN++ A +LF++M N+ +VS+ +M+ G +  G                
Sbjct: 245 LANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKD 304

Query: 412 ---------------HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
                           G++A++LF+ M +  + PDEV     L+ACS +G ++ G     
Sbjct: 305 VVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH 364

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            ++  + +  +      ++D+  + G +  A ++   +P   ++  W A++    L+ +
Sbjct: 365 YIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 421


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/614 (35%), Positives = 349/614 (56%), Gaps = 60/614 (9%)

Query: 19  MLPNCS------RSAPINF------PKPSCLLS--ALTLIKKCKLQTHLHQVHSHIIKKG 64
           M+P+CS       S P +F      P    L +  +L+L+  CK    L  +H+ +IK G
Sbjct: 1   MIPSCSPLTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTG 60

Query: 65  LEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120
           L   +  ++  + LC  + +P    L Y+ +VF  I  PN  +WNT+ +G++ +S  +  
Sbjct: 61  LHNTNYALSKLLELC--VISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSA 118

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180
             ++V +I    +P+ YTFP ++K+C+   + +EG  IH  V++ G D D+FV TSLI +
Sbjct: 119 LKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISV 178

Query: 181 YGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240
           Y +   +  ARKVFD  P R+VVS+TA+I GYAS G +  A+ +FD +P +  VSWNA+I
Sbjct: 179 YVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMI 238

Query: 241 GGLVKIGDLRSARQLFDEMPERN----------VVS------------------------ 266
            G  + G+ + A +LF EM + N          VVS                        
Sbjct: 239 SGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFG 298

Query: 267 -----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
                  +++D Y+K G++ +A  LFE    +DV++W+ LI GY       EA+ +F +M
Sbjct: 299 SNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCG 380
                +P++  ++S++ AC+ +G +D+  W+  Y+ +     + A  +  +L+DM AKCG
Sbjct: 359 LRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCG 418

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +++ A ++F ++ ++ + S+ +MI G ++HG    A  +F RM   G+ PD++ F  +L+
Sbjct: 419 DIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLS 478

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACS  G+++ G   F  M   Y I P  EHY CM+DLLG +G  K A E++N+M +EP  
Sbjct: 479 ACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDG 538

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W +LL ACK+  ++ELGE  A  L ++EP+N G YVLLSNIYATA RW +V  +R+ +
Sbjct: 539 VIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALL 598

Query: 561 KERGLRKIPGCSSL 574
            ++G++K+PGCSS+
Sbjct: 599 NDKGMKKVPGCSSI 612


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 334/579 (57%), Gaps = 46/579 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
           +L+L+  CK    L  +H+ +IK GL   +  ++  +  C  + +P    L Y+ +VF  
Sbjct: 5   SLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFC--ILSPNFDGLPYAISVFET 62

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  PN  +WNT+ +G++ +S  +    ++V +I    +P+ YTFP ++K+C+ +   +EG
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEG 122

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH  V++ G + D++V TSLI +Y K      A KVFD    R+VVS+TA+I GYAS 
Sbjct: 123 QQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASR 182

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----------V 265
           G +  A+ +FD +P +  VSWNA+I G    G+ + A  LF EM + NV          V
Sbjct: 183 GYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVV 242

Query: 266 S-----------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           S                                +ID Y+K G++ +A  LF+   ++DV+
Sbjct: 243 SACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVI 302

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ +I GY       EA+ +F +M      P++  ++S++ AC+Q+G +D   W+  Y+
Sbjct: 303 SWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYI 362

Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
            +    ++ A  +  +L+DM AKCG+++ A ++F +M +R + +  +MI G ++HG    
Sbjct: 363 DKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANA 422

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  +F RM   G+ PD++ F  +L+ACSH G+++ G R F +M   Y I P  EHY CM+
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMI 482

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLG  G  K A E++N+M +EP    W +LL ACK++ ++ELGE  A +L ++EP+N G
Sbjct: 483 DLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPG 542

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SYVLLSNIYATA RW +V  +R+ + ++G++K+PGCSS+
Sbjct: 543 SYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSI 581


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 334/527 (63%), Gaps = 14/527 (2%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLA------TPLS---YSTAVFN-RIVNPNTFLWNTLLK 109
           +++  LE + +L   FI+ C S+A       PL+   ++  +F+ R    + FL N+++K
Sbjct: 1   MLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIK 60

Query: 110 GYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            Y    ++ E F ++  L R  +  PD +TF ++ K+C+  +++ EG  IH+ V+  G  
Sbjct: 61  AYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFC 120

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            D++  T+L+D+Y K  ++ CARK+FDEM +R+ VSWTA+I GY   GD+  A  +FD M
Sbjct: 121 LDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM 180

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
            E+ + ++N +I   VK+GD+ SAR+LFDEMPER+VVS+T MI GY+  G++ SARSLF+
Sbjct: 181 IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFD 240

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLD 347
           A P++++ +W+A+ISGY QN QP EA+K+F +M S  +++PDE  +VS++ A + +G LD
Sbjct: 241 AMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALD 300

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L  WV  ++ R  +D +  +V  AL+DM AKCG + ++  +F+ MP ++  S+ ++I   
Sbjct: 301 LGGWVHRFVRRKKLDRA-TNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAF 359

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +I+G  ++A+ LF  M  +G  P+E+    VL+AC+H GLVE+G R+F+AM+  + + P 
Sbjct: 360 AINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPK 418

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CMVDLLGR G L+ A +L+ SMP E +     + L AC    D+   E V     
Sbjct: 419 IEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAI 478

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++E  N G+Y++L N+YA   RW +   V+  M+  G++K  GCS++
Sbjct: 479 KMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAI 525


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/566 (35%), Positives = 331/566 (58%), Gaps = 46/566 (8%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLL 108
           L  +H+ +IK GL   +  ++  I  C  + +P    L Y+ +VF  I  PN  +WNT+ 
Sbjct: 6   LRMIHAQMIKTGLHNTNYALSKLIEFC--ILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
           +G++ +S  +    ++V +I    +P+ YTFP ++K+C+   + +EG  IH  V++ G D
Sbjct: 64  RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCD 123

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            D++V TSLI +Y +   +  A KVFDE P R+VVS+TA+I GYAS G +  A+ +FD +
Sbjct: 124 LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----------VS------------ 266
           P +  VSWNA+I G  + G+ + A +LF +M + NV          VS            
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 243

Query: 267 -----------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
                               +ID Y+K G++ +A  LFE  P +DV++W+ LI GY    
Sbjct: 244 QVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMN 303

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
              EA+ +F +M      P++  ++S++ AC+ +G +D+  W+  Y+ +    ++ A  +
Sbjct: 304 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSL 363

Query: 370 -AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             +L+DM AKCG+++ A ++F ++ ++ + S+ +MI G ++HG    +  +F RM   G+
Sbjct: 364 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGI 423

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD++ F  +L+ACSH G+++ G   F +M   Y + P  EHY CM+DLLG +G  K A 
Sbjct: 424 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 483

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E++N+M +EP    W +LL ACK++ ++ELGE  A  L ++EP+N GSYVLLSNIYATA 
Sbjct: 484 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAG 543

Query: 549 RWLDVCLVRSKMKERGLRKIPGCSSL 574
           RW +V   R+ + ++G++K+PGCSS+
Sbjct: 544 RWNEVANTRALLNDKGMKKVPGCSSI 569


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/489 (41%), Positives = 298/489 (60%), Gaps = 2/489 (0%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L Y+ ++F+RI   +   WNT++K Y +N    +   +F  L+ E  +PD +T P VIK 
Sbjct: 63  LGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKG 121

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ +  V+EG  IH   ++ G   DVFV  SL+++Y K  EI CARKVFD M +++VV W
Sbjct: 122 CARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLW 181

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
            ++I GYA  G++  A  +F+ MPER   SW  L+ GL K G + SAR+LFD+MP RN+V
Sbjct: 182 NSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLV 241

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+  MI+GY K GD  SA  LF   P  D+V W+ +I+GY  NGQ  +AVK+F  M    
Sbjct: 242 SWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLG 301

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
            +P    LVS++SA S +  L    W+ SY+ ++  +L    +  +L++M AKCG ++ A
Sbjct: 302 SRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELD-GILGTSLIEMYAKCGCIESA 360

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F  +  + V  + ++I GL IHG    A++LF  M   GL P+ + F  VL AC+H 
Sbjct: 361 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 420

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV+DG ++F+ M N Y I P+ EHY C+VD+L R GHL+ A   + +MP+ P+   W +
Sbjct: 421 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 480

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLG  + +  I++GE  A R+ E+ P+  G Y+LLSN+YA +  W  V  VR  M +RG 
Sbjct: 481 LLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGF 540

Query: 566 RKIPGCSSL 574
           RK PGCSS+
Sbjct: 541 RKDPGCSSV 549



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 86/205 (41%), Gaps = 7/205 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+S L+ +    +      +HS++ K G E D  L    I + ++    +  +  
Sbjct: 304 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEM-YAKCGCIESALT 362

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I       W  ++ G   +        +F+ + +    P+   F  V+ AC+H   
Sbjct: 363 VFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGL 422

Query: 152 VREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V +G      ++  + ++  +     L+D+  +   +  A+   + MP   N V W +++
Sbjct: 423 VDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLL 482

Query: 210 VGYASVG--DLVE--AKTVFDLMPE 230
            G  + G  D+ E  A+ V ++ PE
Sbjct: 483 GGSRNHGKIDIGEYAAQRVIEVAPE 507


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/526 (40%), Positives = 322/526 (61%), Gaps = 14/526 (2%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN--TFLWNTLLK 109
           HL ++H+ ++K GL  D    +  +S  ++L   L  S  VF    NP+  TFL NTLL+
Sbjct: 39  HLQELHAQLLKHGLHLDPVAASKLLS-SYALHRRLPASRGVFASFPNPHATTFLPNTLLR 97

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVP--DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
            Y+ N+   E   +F       A+P  D +T+  +IKA S    V    A+H+ V++ G 
Sbjct: 98  AYALNALPREAVAVF------SAMPHRDSFTYSFLIKALSSA-GVAPLRAVHSHVVKLGS 150

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
            ED +VG +LID Y K    S A KVF+EMP R+VVSW + +      G++  A+ +FD 
Sbjct: 151 IEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDE 210

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           M E+  VSWN L+ G  K GD+  A +LF  MPERNVVS++T++ GY K GDM  AR +F
Sbjct: 211 MLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIF 270

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P +++V W+ ++S  AQNG  +EA K+F+ M   +V+ D   +VS+++AC++ G+L 
Sbjct: 271 DKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLA 330

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET-MPNRDVVSYCSMIKG 406
           L   +  Y+    +  S  HV  AL+DM  KCG ++RA  +F+T +  +D VS+ ++I G
Sbjct: 331 LGKRIHRYVRTRQLGRS-THVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGG 389

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            ++HGHG +A+  F +M  +G  PD V    VL+AC+H+G VE+G R+F  M+  Y +VP
Sbjct: 390 FAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVP 449

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHY CM+DLLGR G +K A +L+ SMP +P+   WG+LL AC+L+ ++E  E+  N L
Sbjct: 450 QIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNEL 509

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L+P NAG+Y +LS+IYA A +W D+   R +MK  G +K  G S
Sbjct: 510 SKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSS 555


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/517 (38%), Positives = 321/517 (62%), Gaps = 8/517 (1%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFI 118
           +++  +E +  +   F+ +  S A  + Y+  +F+ R    ++FL N+++K Y +  ++ 
Sbjct: 1   MLRHAIETNVQIFTKFLVISAS-AVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYP 59

Query: 119 EVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
           + F ++  L +E    PD +TF  + K+CS  + V +G  +H+ + R+G   D++V T +
Sbjct: 60  DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-W 236
           +D+Y K  ++ CAR  FDEMP R+ VSWTA+I GY   G+L  A  +FD MP   +V  +
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA++ G VK GD+ SAR+LFDEM  + V+++TTMI GY  + D+ +AR LF+A P+R++V
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239

Query: 297 AWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +W+ +I GY QN QP E +++F +M  + ++ PD+  ++S++ A S  G L L  W   +
Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + R  +D  +  V  A++DM +KCG +++A  +F+ MP + V S+ +MI G +++G+ R 
Sbjct: 300 VQRKKLD-KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LF  M+ E   PDE+    V+TAC+H GLVE+G ++F  M+ +  +    EHY CMV
Sbjct: 359 ALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMV 416

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR G LK A +L+ +MP EP+     + L AC  Y DIE  E +  +  ELEPQN G
Sbjct: 417 DLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDG 476

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +YVLL N+YA   RW D  +V++ M++   +K  GCS
Sbjct: 477 NYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCS 513


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/566 (36%), Positives = 332/566 (58%), Gaps = 46/566 (8%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLL 108
           L  +H+ +IK GL   +  ++  I  C  + +P    L Y+ +VF  I  PN  +WNT+ 
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFC--VLSPHFDGLPYAISVFETIQEPNLLIWNTMF 60

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
           +G++ +S  +    ++V +I    +P+ YTFP ++K+C+   + REG  IH  V++ G D
Sbjct: 61  RGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            D++V TSLI +Y +   +  ARKVFD+   R+VVS+TA+I GYAS G +  A+ +FD +
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-------VSYTT------------ 269
           P +  VSWNA+I G  + G+ + A +LF EM + NV       VS  +            
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 270 --------------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
                               +ID Y K G++ +A  LFE    +DV++W+ LI GY    
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV- 368
              EA+ +F +M      P++  ++S++ AC+ +G +++  W+  Y+++    ++ A   
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             +L+DM AKCG+++ A ++F+++ NR + S+ +MI G ++HG    A  +F RM    +
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD++ F  +L+ACSH G+++ G   F +M+  Y I P  EHY CM+DLLG +G  K A 
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 480

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E++N+M +EP    W +LL ACK++ ++ELGE  A  L ++EP+N GSYVLLSNIYATA 
Sbjct: 481 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 540

Query: 549 RWLDVCLVRSKMKERGLRKIPGCSSL 574
           RW +V  +R+ + ++G++K+PGCSS+
Sbjct: 541 RWNEVAKIRALLNDKGMKKVPGCSSI 566


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 323/518 (62%), Gaps = 10/518 (1%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFI 118
           +++  +E +  +   F+ +  S A  + Y+  +F+ R    ++FL N+++K Y +   + 
Sbjct: 1   MLRHAIETNVQIFTKFLVISAS-AVGIGYARKLFDQRPHREDSFLCNSMIKAYLETRHYN 59

Query: 119 EVFTIFVRLIREEA--VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176
           + F  F R +R+E    PD +TF  + K+C+  + V +G  +H+ + R G   D++V T 
Sbjct: 60  DSFA-FYRDLRKETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTG 118

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS- 235
           ++D+Y K  ++ CAR VFDEMP+R+ VSWTA+I GY   G+L  A  +FD MP+  +V  
Sbjct: 119 VVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVI 178

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           +NA++ G VK GD+ SAR+LFDEM  + V+++TTMI GY    D+ SAR LF+A P+R++
Sbjct: 179 YNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNL 238

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           V+W+ +I GY QN QP EA+++F +M  + ++ PD+  ++S++ A S  G L L  W   
Sbjct: 239 VSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHC 298

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           ++ R ++D  +  V  A++DM +KCG +++A  +F+ MP + V S+ +MI G +++G+  
Sbjct: 299 FVQRKNLD-KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAH 357

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            A+ LF  M  E   PDE+    V++AC+H GLVE+G ++F+ M+  + +    EHY CM
Sbjct: 358 AALDLFLTMAKEE-KPDEITMLAVISACNHGGLVEEGRKWFQMMRK-FGLNAKIEHYGCM 415

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G+LK A  L+ +MP +P+     + L AC  Y DIE  E +  +  ELEPQN 
Sbjct: 416 VDLLGRAGNLKQAEHLITNMPFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+YVLL N+YA   RW D  +V++ M++   +K  GCS
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNMMRKNEAKKEVGCS 513


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/517 (38%), Positives = 320/517 (61%), Gaps = 8/517 (1%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFI 118
           +++  +E +  +   F+ +  S A  + Y+  +F+ R    ++FL N+++K Y +  ++ 
Sbjct: 1   MLRHAIETNVQIFTKFLVISAS-AVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYP 59

Query: 119 EVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
           + F ++  L +E    PD +TF  + K+CS  + V +G  +H+ + R+G   D++V T +
Sbjct: 60  DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-W 236
           +D+Y K  ++ CAR  FDEMP R+ VSWTA+I GY   G+L  A  +FD MP   +V  +
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA++ G VK GD+ SAR+LFDEM  + V+++TTMI GY  + D+ +AR LF+A P+R++V
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239

Query: 297 AWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +W+ +I GY QN QP E + +F +M  + ++ PD+  ++S++ A S  G L L  W   +
Sbjct: 240 SWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + R  +D  +  V  A++DM +KCG +++A  +F+ MP + V S+ +MI G +++G+ R 
Sbjct: 300 VQRKKLD-KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LF  M+ E   PDE+    V+TAC+H GLVE+G ++F  M+ +  +    EHY CMV
Sbjct: 359 ALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMV 416

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR G LK A +L+ +MP EP+     + L AC  Y DIE  E +  +  ELEPQN G
Sbjct: 417 DLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDG 476

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +YVLL N+YA   RW D  +V++ M++   +K  GCS
Sbjct: 477 NYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCS 513


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 334/578 (57%), Gaps = 48/578 (8%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           L ++C     L Q+H+ +++   L   ++    F +   S  + L Y+  VF++I  PN 
Sbjct: 145 LFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNL 204

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHA 160
           + WN L++  + +S  I+   +F+R++ +    P+K+TFP++IKA +       G A+H 
Sbjct: 205 YSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHG 264

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDL 218
             I+    +DVFV  SLI  Y     +  A  VF+  E   +++VSW +M+ G+   G  
Sbjct: 265 MAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYP 324

Query: 219 VEAKTVFDLMPERS----------------------------------------NVSWNA 238
            +A  +F+ M                                            NV  NA
Sbjct: 325 DKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVC-NA 383

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
            I   VK G++  AR LFD M +R+VVS+TT+IDGYAK+ +   AR +F++ P +D+ AW
Sbjct: 384 TIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443

Query: 299 SALISGYAQNGQPDEAVKIFSD--MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           + LISGY Q+G+P EA+ IF +  +     +PD+  L+S +SAC+Q+G +D+  W+  Y+
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            +  + L+R ++  +L+DM +K G++++A E+F ++ N+DV  + +MI GL++HG G  A
Sbjct: 504 KKERIQLNR-NLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAA 562

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           + LF  M    + P+ V FT +L ACSH GLV++G R F+ M+ VY +VP  +HY+CMVD
Sbjct: 563 IELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVD 622

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           +LGR GHL+ A + +  MP+ P AS WGALLGAC ++ ++EL E   +RL E+EP N G+
Sbjct: 623 VLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGA 682

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           YVLLSN+YA    W  V  +R +M++ GL+K  GCSS+
Sbjct: 683 YVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 35/265 (13%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    LLS L+   +         +H +I K+ ++ + +L    I + +S +  +  +  
Sbjct: 475 PDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDM-YSKSGDVEKAIE 533

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ I N + F+W+ ++ G + + R      +F+ +   +  P+  TF  ++ ACSH   
Sbjct: 534 VFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGL 593

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V EG  +   + R +GV       + ++D+ G+   +  A K  + MP            
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMP------------ 641

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE---RNVVSY 267
                           L P  S   W AL+G     G+L  A +    + E    N  +Y
Sbjct: 642 ----------------LAPSAS--VWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAY 683

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPD 292
             + + YAK GD      L +   D
Sbjct: 684 VLLSNLYAKTGDWEGVSELRQQMRD 708


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 317/544 (58%), Gaps = 39/544 (7%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV--AHFISLC-HSLATPLSYSTAVFN 94
           LS L+ ++ CK    L Q+H+ IIK     D  L       +LC  SL     Y+ ++  
Sbjct: 38  LSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLA 97

Query: 95  RIVNPNTFLWNTLLKGY-SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           ++  PN  L+N +++G  + N+  IE   ++ +++ +  VPD YT P V+KAC+   +VR
Sbjct: 98  QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 157

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           EG  +H   I+ G+  DV+V  +L+ +Y     I  ARKVF                   
Sbjct: 158 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF------------------- 198

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF---DEMPERNVVSYTTM 270
                       D  P+R  VSW  +I G VK+G  R    L+   +     +V     +
Sbjct: 199 ------------DTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNAL 246

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +D Y K GD   AR +F+  P ++VV+W+++ISG AQ GQ  E++ +F  M    V+PD+
Sbjct: 247 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             LV+++++C+ +G L+L  WV +YL R+ +  +   +  ALVDM AKCG++D+A  +F+
Sbjct: 307 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIR-ADGFIGNALVDMYAKCGSIDQACWVFQ 365

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M  +DV SY +MI GL++HG G +A+ LF  M   G+ PDEV F  VLTACSHVGLVE+
Sbjct: 366 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 425

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G ++FE M  +Y + P  EHY CMVDLLGR G +  A E + +MP+EP A   GALLGAC
Sbjct: 426 GRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGAC 485

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           K++  +ELGE V  ++ ++EP+  G+YVL+SNIY++A+RW D   +R  MKER L K PG
Sbjct: 486 KIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPG 545

Query: 571 CSSL 574
           CSS+
Sbjct: 546 CSSI 549


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/564 (36%), Positives = 320/564 (56%), Gaps = 47/564 (8%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLLKGY 111
            H+ ++K GL   +  ++  + LC  + +P    L Y+ +VF     PN  +WNT+L+G 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELC--VVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGL 58

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           + +S  +    ++VR++    VP+ YTFP ++K+C+   +  EG  IHA V++ G + D 
Sbjct: 59  ASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDR 118

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           +  TSLI +Y +   +  ARKVFD   +R+VVS TA+I GYAS GD+  A+ VFD + ER
Sbjct: 119 YAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER 178

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV-----------------------SYT 268
             VSWNA+I G V+      A +LF EM   NV                           
Sbjct: 179 DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238

Query: 269 TMIDG-----------------YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           T++D                  Y+K GD+  A  LFE    +DVV+W+ LI GY      
Sbjct: 239 TLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLY 298

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI-A 370
            EA+ +F +M      P++  ++S++ AC+ +G +D+  W+  Y+ +    ++    +  
Sbjct: 299 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRT 358

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +L+DM AKCG+++ A ++F +M ++ + S+ +MI G ++HG    A  LF RM   G+ P
Sbjct: 359 SLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP 418

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           D++    +L+ACSH GL++ G   F+++   Y I P  EHY CM+DLLG  G  K A E+
Sbjct: 419 DDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEI 478

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           ++ MP+EP    W +LL ACK++ ++EL E  A +L E+EP+N+GSYVLLSNIYATA RW
Sbjct: 479 IHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRW 538

Query: 551 LDVCLVRSKMKERGLRKIPGCSSL 574
            DV  +R  +  +G++K+PGCSS+
Sbjct: 539 EDVARIREVLNGKGMKKVPGCSSI 562


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/602 (34%), Positives = 344/602 (57%), Gaps = 50/602 (8%)

Query: 20  LPNCSRSAPI-----NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH 74
            PN S S  +     N P  S + S ++L++ C     ++Q+HS  IK GL  +H  +  
Sbjct: 13  FPNLSLSLFLKRMISNTPLHSFVKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTK 72

Query: 75  FISLCHSLAT-PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
            I  C +  +  + Y+  VF+ I  P+ F+WNT++KGYS+ +      +++  ++     
Sbjct: 73  VIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIK 132

Query: 134 PDKYTFPLVIKACSHVLSVREGTAI-HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           PD +TFP ++K  +  ++++ G  + + AVI   +D ++FV    I L+     ++ ARK
Sbjct: 133 PDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK 192

Query: 193 VFDEMPERNVVSWTAMIVGY-------------------------------------ASV 215
           +FD      VV+W  ++ GY                                     + +
Sbjct: 193 IFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKL 252

Query: 216 GDLVEAKTVFDL-----MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
            DLV  K +++      + E + +  NALI      G++ +AR +FDEM  R+V+S+T++
Sbjct: 253 KDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSI 312

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           + G+A    +  AR  F+  P+RD V+W+A+I GY +  +  E + +F DM   NV+PDE
Sbjct: 313 VTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDE 372

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
           F +VS+++AC+ +G L+L  W  +Y+ ++ +  +   +  AL+DM  KCGN+++A ++F 
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYIDKNKIK-NDTFIGNALIDMYFKCGNVEKAKKIFN 431

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M  +D  ++ +MI GL+ +GHG +A+++F  ML   +TPDE+ +  V+ AC+HVGLV  
Sbjct: 432 EMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAK 491

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  FF  M   + I P+  HY CMVDLLGR GHLK A E++ +MPV+P++  WG+LLGAC
Sbjct: 492 GKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGAC 551

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ +++L E+ AN + ELEP+N   YVLL NIYA   +W ++  VR  M ERG++KIPG
Sbjct: 552 RVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPG 611

Query: 571 CS 572
           CS
Sbjct: 612 CS 613


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 331/580 (57%), Gaps = 51/580 (8%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD-----HSLVAHFISLCHSLATPLSYSTAVFNR 95
           L  I +C     L Q+H+H+++     D       L A+ IS C    + L Y+  VFN+
Sbjct: 76  LEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSC----SCLIYAKNVFNQ 131

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVRE 154
           I  PN + WNTL++GY+ +S   + F IF+ ++      P+K+TFP + KA S +  +  
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G+ +H  VI+  +  D+F+  SLI+ YG       A +VF  MP ++VVSW AMI  +A 
Sbjct: 192 GSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFAL 251

Query: 215 VGDLVEAKTVFDLMPERS---NV-------------------SW---------------- 236
            G   +A  +F  M  +    NV                    W                
Sbjct: 252 GGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLIL 311

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NA++   VK G +  A+ LF++M E+++VS+TTM+DG+AK+G+   A  +F+A P +  
Sbjct: 312 NNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWT 371

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            AW+ALIS Y QNG+P  A+ +F +M  SK+ +PDE  L+  + A +Q+G +D  +W+  
Sbjct: 372 AAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHV 431

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ +  ++L+  H+  +L+DM AKCGN+++A E+F  +  +DV  + +MI  L+++G G+
Sbjct: 432 YIKKHDINLN-CHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGK 490

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            A+ LF  ML   + P+ V FT +L AC+H GLV +G + FE M+ +Y IVP  +HY C+
Sbjct: 491 AALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCV 550

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VD+ GR G L+ A   +  MP+ P A+ WGALLGAC  + ++EL EL    L ELEP N 
Sbjct: 551 VDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNH 610

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           G++VLLSNIYA A  W  V  +R  M++  ++K P CSS+
Sbjct: 611 GAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSI 650



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 185/415 (44%), Gaps = 46/415 (11%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           ML +CS   P  F  P  L  A + +K   L + LH +   +IK  L  D  ++   I+ 
Sbjct: 163 MLHSCSE-FPNKFTFPF-LFKAASRLKVLHLGSVLHGM---VIKASLSSDLFILNSLINF 217

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
             S   P   +  VF  +   +   WN ++  ++      +   +F  +  ++  P+  T
Sbjct: 218 YGSSGAP-DLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVIT 276

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              V+ AC+  + +  G  I + +   G  E + +  +++D+Y K   I+ A+ +F++M 
Sbjct: 277 MVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMS 336

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           E+++VSWT M+ G+A +G+  EA  +FD MP +   +WNALI    + G  R A  LF E
Sbjct: 337 EKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHE 396

Query: 259 M-------PER---------------------------------NVVSYTTMIDGYAKVG 278
           M       P+                                  N    T+++D YAK G
Sbjct: 397 MQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCG 456

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++  A  +F A   +DV  WSA+I   A  GQ   A+ +FS M    ++P+     +++ 
Sbjct: 457 NLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILC 516

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           AC+  G ++    +   +   +  + +      +VD+  + G +++AA   E MP
Sbjct: 517 ACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMP 571


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/544 (38%), Positives = 325/544 (59%), Gaps = 19/544 (3%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +LI     +  L Q+H+ ++  GL+    L+   I    S    ++++  VF+ +  P  
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGD-ITFARQVFDDLPRPQV 84

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F WN +++GYS+N+ F +   ++ ++      PD +TFP ++KAC  +  ++ G  +HA 
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQ 144

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLV 219
           V R G + DVFV   LI LY K + + CAR VF+   +PER +VSWTA++  YA  G+ V
Sbjct: 145 VFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPV 204

Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNV-------VSYT 268
           EA  +F  M +       V+  +++     + DL   R +   + +  +       +S  
Sbjct: 205 EALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLN 264

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           TM   YAK G + +A+ LF+     +++ W+A+ISGYA+NG   +A+ +F +M +K+V+P
Sbjct: 265 TM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D   + S +SAC+QVG+L+ + W+D Y+SRS        + +AL+DM AKCG+++ A  +
Sbjct: 322 DTISITSAISACAQVGSLEQARWMDEYVSRSDYR-DDVFISSALIDMFAKCGSVECARSV 380

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+   +RDVV + +MI G  +HG  R+A+SL+  M  +G+ P++V F  +L AC+H G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMV 440

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
            +GW FF  M + + I P  +HYAC++DLLGR GHL  AYE++  MPV+P  + WGALL 
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           ACK +  +ELG+  A +LF ++P N G YV LSN+YA A  W  V  VR +MKE+GL K 
Sbjct: 500 ACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 569 PGCS 572
            GCS
Sbjct: 560 VGCS 563


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/579 (35%), Positives = 331/579 (57%), Gaps = 45/579 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVN- 98
           L L+ KC     L Q+HS IIK GL       +  I  C  S +  LSY+ ++F+ I + 
Sbjct: 29  LNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQ 88

Query: 99  -PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            PN F+WNTL++ +S          +F +++     P+ +TFP + K+C+   +  E   
Sbjct: 89  PPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQ 148

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA  ++  +     V TSLI +Y +  E+  AR VFD+   R+ VS+TA+I GY S G 
Sbjct: 149 LHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGH 208

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE---------------- 261
           + +A+ +FD +P +  VSWNA+I G V+ G    A   F  M E                
Sbjct: 209 VDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSA 268

Query: 262 -----------------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                                  +N+     ++D Y+K G++ +AR LF+   D+DV+ W
Sbjct: 269 CGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILW 328

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           + +I GY      +EA+ +F  M  +NV P++   ++++ AC+ +G LDL  WV +Y+ +
Sbjct: 329 NTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDK 388

Query: 359 S---HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           +     +++   +  +++ M AKCG ++ A ++F +M +R + S+ +MI GL+++GH  +
Sbjct: 389 NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAER 448

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LF+ M++EG  PD++ F  VL+AC+  G VE G R+F +M   Y I P  +HY CM+
Sbjct: 449 ALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMI 508

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLL R+G    A  L+ +M +EP  + WG+LL AC+++  +E GE VA RLFELEP+N+G
Sbjct: 509 DLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSG 568

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +YVLLSNIYA A RW DV  +R+K+ ++G++K+PGC+S+
Sbjct: 569 AYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSI 607


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 330/577 (57%), Gaps = 44/577 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           S +  ++ CK    L Q+ S I + GLE D   +   ++ C  S    L Y+  +FN + 
Sbjct: 145 SCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQ 204

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           +P+ F++N ++K Y++     +V  +F +L  +   PD +T+P V+KA   +  VR+G  
Sbjct: 205 DPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEK 264

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +   +++ G+D D +V  SLID+Y +   +  A+K+FDEM  R+ VSW  MI GY     
Sbjct: 265 VRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRR 324

Query: 218 LVEAKTVFDLMPERSN--------VSW-------------------------------NA 238
             +A   F  M +  N        VS                                NA
Sbjct: 325 FEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNA 384

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           L+    K G L  AR +FDEM  +NV+ +T+MI GY   GD+  AR LF+ +P RDVV W
Sbjct: 385 LLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLW 444

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+I+GY Q    D+AV +F +M  + V+PD+F +V+L++ C+Q+G L+   W+  YL  
Sbjct: 445 TAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDE 504

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
           + + +    V  AL++M +KCG +D++ E+F  + ++D  S+ S+I GL+++G   +A+ 
Sbjct: 505 NRITMDVV-VGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALR 563

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF  M   G  PD++ F  VL+ACSH GLVE+G RFF +M+ V+ I P  EHY C++DLL
Sbjct: 564 LFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 623

Query: 479 GRTGHLKSAYELLNSMPVEPH---ASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           GR G L  A EL+  +P+E        +GALL AC++++++++GE +A +L  +E  ++ 
Sbjct: 624 GRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSS 683

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            + LL+NIYA+ DRW D   VR KMKE G++K+PGCS
Sbjct: 684 IHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCS 720


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 336/592 (56%), Gaps = 48/592 (8%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSL 82
           S ++ +   K SC+      ++ CK    L Q+ S I + GLE D   +   ++ C  S 
Sbjct: 88  SSASNLQTNKKSCI----ECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSS 143

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
              L Y+  +FN + +P+ F++N ++K Y++     +V  +F +L  +   PD +T+P V
Sbjct: 144 LGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFV 203

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           +KA   +  VR+G  +   +++ G+D D +V  SLID+Y +   +  A+K+FDEM  R+ 
Sbjct: 204 LKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDS 263

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSN--------VSW------------------ 236
           VSW  MI GY       +A   F  M +  N        VS                   
Sbjct: 264 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 323

Query: 237 -------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
                        NAL+    K G L  AR +FDEM  +NV+ +T+MI GY   GD+  A
Sbjct: 324 YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 383

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R LF+ +P RDVV W+A+I+GY Q    D+AV +F +M  + ++PD+F +V+L++ C+Q+
Sbjct: 384 RDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQL 443

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           G L+   W+  YL  + + +    V  AL++M +KCG +D++ E+F  + ++D  S+ S+
Sbjct: 444 GALEQGKWIHGYLDENRITMDVV-VGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 502

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I GL+++G   +A+ LF  M   G  PD++ F  VL+ACSH GLVE+G RFF +M+ V+ 
Sbjct: 503 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 562

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH---ASAWGALLGACKLYSDIELGE 520
           I P  EHY C++DLLGR G L  A EL+  +P+E        +GALL AC++++++++GE
Sbjct: 563 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 622

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +A +L  +E  ++  + LL+NIYA+ DRW D   VR KMKE G++K+PGCS
Sbjct: 623 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCS 674


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 316/534 (59%), Gaps = 35/534 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L +I  CK    L  +H+ ++ +        V + +   +S      Y+  VF+ I  PN
Sbjct: 6   LHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPN 65

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            +LW +L+ GY +N ++ E F++F+++ RE      +T   V+KA + +   + G A++ 
Sbjct: 66  AYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYG 125

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
                  ++D+     +I  YG    +  ARK FD MPERNVVSWT+MI GY   GD+ E
Sbjct: 126 FAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAE 185

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDL-RSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           A+ +FD MP +   SWN ++ G + IGD    AR LFD+MP +N+V+++TMI GYA+ G 
Sbjct: 186 AQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNG- 244

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
                                         QP +A+++F     ++++PDE  ++ ++SA
Sbjct: 245 ------------------------------QPLKALELFERFKEQDIKPDETFILGIISA 274

Query: 340 CSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           CSQ+G +D + + + +Y+  S   LS   V  +L+DM AKCG++++A ++FE    +D++
Sbjct: 275 CSQLGIIDAAESIIHNYVGPSL--LSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLL 332

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            Y +MI  L+ HG GR A+ LFD+M    + PD V F  VLTAC+H GLV++G ++F+ M
Sbjct: 333 CYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQM 392

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              + I PS +HYAC+VDLLGR G L+ AY L+ +MP+ PH+  WGALL AC+++ +++L
Sbjct: 393 TEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQL 452

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E+ A  LF++EP N+G+Y+LLSNIYA A RW  V  VR+K++E  +RK  G S
Sbjct: 453 AEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSS 506


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 328/569 (57%), Gaps = 52/569 (9%)

Query: 17  SSMLPNCSRSAPINFPK----PSCLLSALTLIKKCKLQT-----HLHQVHSHIIKKGLEQ 67
           +S LP  S   P++F      P+  L   T++K    ++     +L Q+H  +++ G  Q
Sbjct: 6   TSHLP--SPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQ 63

Query: 68  DHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
           DH +     +L    A P      ++  VF+ I NPN F+WN ++KG  +N++  +    
Sbjct: 64  DHYVSG---ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYF 120

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183
           + R++ + A P+K+T+P + KACS   +V+EG  IH  V++ G+  DV + ++ I +Y  
Sbjct: 121 YGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYAS 179

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL 243
              +  ARK+F                 Y+   D+V                WN +I G 
Sbjct: 180 FGRLEDARKMF-----------------YSGESDVV---------------CWNTMIDGY 207

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           +K G L +A+ LF +MP +N+ S+  MI+G AK G++  AR LF+   +RD ++WS+++ 
Sbjct: 208 LKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVD 267

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           GY   G+  EA++IF  M  +  +P  FIL S+++ACS +G +D   WV +YL R+ + L
Sbjct: 268 GYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKL 327

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
             A +  AL+DM AKCG +D   E+FE M  R++ ++ +MI GL+IHG    A+ LF ++
Sbjct: 328 D-AVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKL 386

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
               + P+ +    VLTAC+H G V+ G R F+ M+  Y + P  EHY CMVDLLGR+G 
Sbjct: 387 QEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGL 446

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
              A +L+NSMP++P+A+ WGALLGAC+++ + +L E V   L ELEPQN+G YVLLSNI
Sbjct: 447 FSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNI 506

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YA   R+ DV  +R  MK+RG++ +PG S
Sbjct: 507 YAKVGRFDDVSKIRKLMKDRGIKTVPGVS 535


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/525 (38%), Positives = 310/525 (59%), Gaps = 41/525 (7%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTL 107
           +L Q+H+ +++ G  QDH +     +L    A P      ++  VF+ I NPN F+WN +
Sbjct: 48  YLTQLHALVLRSGHFQDHYVSG---ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIV 104

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +KG  +N++  +    + R++ + A P+K+T+P + KACS   +V+EG  IH  V++ G+
Sbjct: 105 IKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGI 163

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             DV + ++ I +Y     +  ARK+F                 Y+   D+V        
Sbjct: 164 GSDVHIKSAGIQMYASFGRLEDARKMF-----------------YSGESDVV-------- 198

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
                   WN +I G +K G L +A+ LF +MP +N+ S+  MI+G AK G++  AR LF
Sbjct: 199 -------CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLF 251

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   +RD ++WS+++ GY   G+  EA++IF  M  +  +P  FIL S+++ACS +G +D
Sbjct: 252 DEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAID 311

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
              WV +YL R+ + L  A +  AL+DM AKCG +D   E+FE M  R++ ++ +MI GL
Sbjct: 312 QGRWVHAYLKRNSIKLD-AVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGL 370

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +IHG    A+ LF ++    + P+ +    VLTAC+H G V+ G R F+ M+  Y + P 
Sbjct: 371 AIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPE 430

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CMVDLLGR+G    A +L+NSMP++P+A+ WGALLGAC+++ + +L E V   L 
Sbjct: 431 LEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILL 490

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELEPQN+G YVLLSNIYA   R+ DV  +R  MK RG++ +PG S
Sbjct: 491 ELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVS 535


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 316/538 (58%), Gaps = 9/538 (1%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+  C     L ++H+ ++  G  Q+  L    I     LA  + Y+  +F+++   + F
Sbjct: 35  LLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVF 94

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LWNTL++GY+      E   ++  +      PD YTFP V+++C+ + ++REG  +H  +
Sbjct: 95  LWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNI 154

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G D DVFV +SL+ +Y +  E      VF EM  RN+VSWTA+I GY       E  
Sbjct: 155 VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGL 214

Query: 223 TVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV---VSYTT-MIDGY 274
            VF  M     + + V+  +++     +  L   + +     +  V   VS T  +I  Y
Sbjct: 215 GVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALY 274

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K G++ +ARSLF+    +++V+W+A+I+ Y QN     AVK+F  M ++ V  D   +V
Sbjct: 275 GKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMV 334

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S++SAC+ +G L+   W+   + R  ++++   +  AL+DM AKCGN+D A E+FE +P 
Sbjct: 335 SVISACASLGALNTGRWMHELVKRKGLEIN-VSITNALIDMYAKCGNIDLAREVFERLPC 393

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           R VVS+ SMI   + HGHG  A+ LF RM  EG+ P+   F  V TAC H GLVE+G + 
Sbjct: 394 RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKH 453

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           FE+M   Y+I+P  EH ACMVDLLGR G L  AYE ++ MPVEP  S WGALLG+C+++S
Sbjct: 454 FESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHS 513

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++EL ELVA +LF L+PQ    YVL+SNIYA A RW D   +R  M+ER L+KIPG S
Sbjct: 514 NLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHS 571


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 334/567 (58%), Gaps = 50/567 (8%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTLLKGY 111
           +H+ +IK GL   +  ++  +  C  + +P      Y+ +VF+ I  PN  +WNT+ +G+
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFC--VVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           + +S  +    +++ +I    +PD YTFP ++K+C+     +EG  IH  V++ G D D+
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           +V TSLI +Y +   +  ARKVFD    R+VVS+TA+I GY S G +  A+ +FD +P +
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEM-------PE--------------------RNV 264
             VSWNA+I G V+ G+ + A +LF EM       P+                    R+V
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHV 244

Query: 265 VSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
            S+               +ID Y+K G++ +A  LF+   ++DV++W+ LI GY      
Sbjct: 245 HSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLY 304

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL--SRAHVI 369
            EA+ +F +M      P++  ++S++ AC+ +G +D+  W+  Y+++    +  + + + 
Sbjct: 305 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQ 364

Query: 370 AALVDMNAKCGNMDRAAELFET-MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
            +L+DM AKCG++D A ++F++ M NR + ++ +MI G ++HG    A  +F RM   G+
Sbjct: 365 TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGI 424

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD++ F  +L+ACSH G+++ G   F +M   Y I P  EHY CM+DLLG +G  K A 
Sbjct: 425 EPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAE 484

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E++N+MP+EP    W +LL ACK++ ++ELGE  A +L ++EP N+GSYVLLSNIYA A 
Sbjct: 485 EMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAG 544

Query: 549 RWLDVCLVRSKMKERGL-RKIPGCSSL 574
           RW +V  +R+ + ++G+ +K+PGCSS+
Sbjct: 545 RWNEVAKIRALLNDKGMKKKVPGCSSI 571



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 198/417 (47%), Gaps = 47/417 (11%)

Query: 43  LIKKC---KLQTHLHQVHSHIIKKGLEQDHSLVAHFISL---------------CHSLAT 84
           L+K C   K++    Q+H H++K G + D  +    IS+                 S   
Sbjct: 95  LLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRD 154

Query: 85  PLSYSTAV---------------FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
            +SY+  +               F+ I   +   WN ++ GY +   + E   +F  ++ 
Sbjct: 155 VVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMM 214

Query: 130 EEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
              V PD+ T   V+ AC+   S+  G  +H+ +   G   ++ +  +LIDLY K  E+ 
Sbjct: 215 MTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVE 274

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLV 244
            A ++FD +  ++V+SW  +I GY  +    EA  +F  M       ++V+  +++    
Sbjct: 275 TACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 334

Query: 245 KIGDLRSAR--QLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAA-PDRDVV 296
            +G +   R   ++     + VV+      T++ID YAK GD+ +A+ +F+++  +R + 
Sbjct: 335 HLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLS 394

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            W+A+ISG+A +G+ + A  IFS M    ++PD+   V L+SACS  G LDL   +   +
Sbjct: 395 TWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 454

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
           +R +    +      ++D+    G    A E+  TMP   D V +CS++K   IHG+
Sbjct: 455 TRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 511


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 338/578 (58%), Gaps = 46/578 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIVNP 99
           ++L+K CK  + L Q+ +HI   GL+QD  ++   ++    S     +Y+  +FN I +P
Sbjct: 12  ISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHP 71

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           + F++N ++K + +        ++F +L RE  V PD YT+P V+K    +  VREG  I
Sbjct: 72  SLFIYNLMIKAFVKRGSLRSAISLFQQL-RERGVWPDNYTYPYVLKGIGCIGEVREGEKI 130

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA V++ G++ D +V  SL+D+Y +   +    +VF+EMPER+ VSW  MI GY      
Sbjct: 131 HAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRF 190

Query: 219 VEAKTVFDLMPERSN---------------------------------------VSWNAL 239
            EA  V+  M   SN                                       +  NAL
Sbjct: 191 EEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNAL 250

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +    K G +  AR++FD M  +NV  +T+M+ GY   G +  AR LFE +P RDVV W+
Sbjct: 251 LDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWT 310

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+I+GY Q    ++A+ +F +M  + V+PD+FI+V+L++ C+Q+G L+   W+ +Y+  +
Sbjct: 311 AMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDEN 370

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + +  A V  AL++M AKCG ++++ E+F  + + D  S+ S+I GL+++G   +A+ L
Sbjct: 371 RIKMD-AVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALEL 429

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F+ M + GL PD++ F  VL+AC H GLVE+G + F +M ++Y I P+ EHY C +DLLG
Sbjct: 430 FEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLG 489

Query: 480 RTGHLKSAYELLNSMPVEPH---ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           R G L+ A EL+  +P + +      +GALL AC+ Y +I++GE +A  L +++  ++  
Sbjct: 490 RAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSL 549

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + LL++IYA+ADRW DV  VRSKMK+ G++K+PG S++
Sbjct: 550 HTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAI 587


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 321/537 (59%), Gaps = 35/537 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS--LCHSLATPLSYSTAVFNRIVN 98
           ++L++       + Q+H+ IIK  L+ ++ ++A  +      S A  L Y+ +VF+ I +
Sbjct: 7   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 66

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTA 157
           P+TF+WNT+++ Y  +    E  ++F ++  +E +P D Y+  LVI+AC  +     G  
Sbjct: 67  PDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQK 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  V++ G+  D+FV T+LI++Y K                                GD
Sbjct: 127 LHTQVLKIGLGSDLFVETALIEMYAK-------------------------------FGD 155

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
           +  A+ + D M     V +N L+   V++G++  A  LFD MPER++VS+ TMI G+A +
Sbjct: 156 IEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASL 215

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           GD+ +A+ LF+   +RD+++WS++I+ YA+  Q +EA+++F +M   NV PD+  +VS++
Sbjct: 216 GDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVL 275

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           SAC  VG L +   +   + R+ +++    +  +LVDM AKCG++D +  +F  M NRDV
Sbjct: 276 SACGDVGALGMGKMIHECIERNRIEID-LKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDV 334

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
            ++ +MI GL+ HG G  A+  F +M+SE + P++V F  VL+ACSH+GLV++GW +F +
Sbjct: 335 FAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTS 394

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M  VY + P  EHY C+VD+LGR G L+ A EL+ SMP  P A  W ALLGAC++Y ++E
Sbjct: 395 MSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVE 454

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + E     L ELEP   G+YVLLSNIY+ A  W  V  VR  MK   ++K+PG SS+
Sbjct: 455 IAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSI 511


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/532 (38%), Positives = 317/532 (59%), Gaps = 29/532 (5%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           + LI        LHQ+H+ I    L  +  +V   IS   SL + L Y+ ++F    +PN
Sbjct: 44  IPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKS-LDYALSIFRCFDHPN 102

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F++N L++G ++NSRF    + FV ++R    PD+ T P V+K+ + ++ V  G  +H 
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V++ G++ D FV  SL+D+Y K  E+    ++FDE P+RN                  +
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRN------------------K 204

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A+++         + WN LI G  K+GDL  A  LF+ MPERN  S+ ++I+G+ + GD+
Sbjct: 205 AESI---------LLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDL 255

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR LF   P+++VV+W+ +I+G++QNG  ++A+ +F  M  + V+P++  +VS + AC
Sbjct: 256 DRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC 315

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           +++G L +   + +YLS +   L+R  +  ALVDM AKCGN+  A+ +F     +D++++
Sbjct: 316 TKIGALQVGERIHNYLSSNGFQLNRG-IGTALVDMYAKCGNIKSASRVFVETKGKDLLTW 374

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
             MI G +IHG   QA+  F +M S G+ PDEV F  +LTACSH G V+ G  FFE+M+ 
Sbjct: 375 SVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRL 434

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y+I P+ +HY  +VDLLGR G L  A   + SMP+ P    WGAL  AC+ + +IE+ E
Sbjct: 435 DYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAE 494

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L A +L +LEP++ GSYV LSN+YA   RW DV  VR+ MK RG+ K PG S
Sbjct: 495 LTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWS 546


>gi|356498888|ref|XP_003518279.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 552

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 330/546 (60%), Gaps = 14/546 (2%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVA---HFISLCHSLATPLSYSTAVF 93
           + L+   K   HL Q H+  +K   +Q     H  +    H +  C    T L Y+  +F
Sbjct: 8   MQLLNAAKTIDHLKQTHALFLKLLRQQPPHHYHYFMGRLLHQVLRCTGEKTNLCYAHQLF 67

Query: 94  NRIVN-PNTFLWNTLLKGY-SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           + + N P++FLW +L++   S  +      + + R+ +   +P  +TF  ++ AC  V +
Sbjct: 68  DTMPNCPSSFLWTSLIRALLSHQAHLHHCISTYSRMHQNGVLPSGFTFSSILSACGRVPA 127

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + EG  +HA V++ G   +  V T+L+D+Y K   IS AR VFD M +R+VV+WTAM+ G
Sbjct: 128 LFEGKQVHARVMQSGFHGNKIVQTALLDMYAKSGCISDARAVFDGMDDRDVVAWTAMVCG 187

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           YA VG +V+A+ +FD M ER++ +W A++ G     D+++A++L+D M ++N V++  MI
Sbjct: 188 YAKVGMMVDAQWLFDKMGERNSFTWTAMVAGYANCEDMKTAKKLYDVMNDKNEVTWVAMI 247

Query: 272 DGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
            GY K+G++  AR +F+  P  +   A +A+++ YAQ+G   EA+ ++  M    ++  E
Sbjct: 248 AGYGKLGNVREARRVFDGIPVPQGASACAAMLACYAQHGYAKEAIDMYEKMREAKIKITE 307

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELF 389
             +V  +SAC+Q+ ++ +SN +  +L     D  R H+++ AL+ M++KCGN++ A   F
Sbjct: 308 VAMVGAISACAQLRDIRMSNTLTGHLEEGCCD--RTHIVSTALIHMHSKCGNINLALSEF 365

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
            TM  RDV +Y +MI   + HG  + A+ LF +M  EGL P++V F  VL AC   G +E
Sbjct: 366 TTMRYRDVYTYSAMIAAFAEHGKSQDAIDLFLKMQKEGLKPNQVTFIGVLNACGSSGYIE 425

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G RFF+ M  V+ I P PEHY C+VDLLG+ G L+ AY+L+        A+ WG+LL  
Sbjct: 426 EGCRFFQIMTGVFGIEPLPEHYTCIVDLLGKAGQLERAYDLIKQNASSADATTWGSLLAT 485

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+LY ++ELGE+ A  LFE++P+++G+YVLL+N YA+ D+W     V+  + E+G++K P
Sbjct: 486 CRLYGNVELGEIAARHLFEIDPEDSGNYVLLANTYASKDKWEHAQEVKKLISEKGMKKKP 545

Query: 570 -GCSSL 574
            G SS+
Sbjct: 546 SGYSSI 551


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 335/577 (58%), Gaps = 44/577 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIVNP 99
           ++L+K CK  + L Q+ +HI   GL+QD   +   ++    S     +Y+  +FN I +P
Sbjct: 12  ISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDP 71

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           + F++N ++K + ++  F    ++F +L      PD YT+P V+K    +  VREG  +H
Sbjct: 72  SLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVH 131

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A V++ G++ D +V  S +D+Y +   +    +VF+EMP+R+ VSW  MI GY       
Sbjct: 132 AFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFE 191

Query: 220 EAKTVFDLMPERSN---------------------------------------VSWNALI 240
           EA  V+  M   SN                                       +  NAL+
Sbjct: 192 EAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALL 251

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
               K G +  AR++FD M  +NV  +T+M+ GY   G +  AR+LFE +P RD+V W+A
Sbjct: 252 DMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTA 311

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +I+GY Q  + +E + +F +M  + V+PD+FI+V+L++ C+Q G L+   W+ +Y+  + 
Sbjct: 312 MINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENR 371

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           + +  A V  AL++M AKCG ++++ E+F  +  +D  S+ S+I GL+++G   +A+ LF
Sbjct: 372 IKVD-AVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELF 430

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
             M + GL PD++ F  VL+ACSH GLVE+G + F +M ++Y I P+ EHY C +DLLGR
Sbjct: 431 KAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGR 490

Query: 481 TGHLKSAYELLNSMPVEPH---ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
            G L+ A EL+  +P + +      +GALL AC+ Y +I++GE +A  L +++  ++  +
Sbjct: 491 AGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLH 550

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            LL++IYA+ADRW DV  VR+KMK+ G++K+PG S++
Sbjct: 551 TLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAI 587


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/594 (35%), Positives = 335/594 (56%), Gaps = 45/594 (7%)

Query: 25  RSAPINFPKPSCLLSA---LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH- 80
           +  P N+     L+ +   L+L++ C     + ++H+ +I  GL  D   ++  ++ C  
Sbjct: 39  KDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAI 98

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTF 139
           S    L Y   + N   N N F WN  ++GY ++   I    ++  ++R+  A+PD YT+
Sbjct: 99  SEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTY 158

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
           PL+ K C+          I   VI+ G D D+FV  ++I +     E+  ARK+FDE   
Sbjct: 159 PLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV 218

Query: 200 RNVVSWTAMIVGYASVG------DLVEAKTVFDLMPER-------------SNVSW---- 236
           R++VSW ++I GY   G      DL       ++MP+               N++     
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278

Query: 237 ----------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                           NAL+   +K  ++ +A+ LF+ M ++ VVS+TTM+ GYAK G +
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLL 338

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            SA  LF   P++DVV W+ALI G+ Q  +  EA+ +F +M + +V PD+  +V+ +SAC
Sbjct: 339 ESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSAC 398

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           SQ+G LD+  W+  Y+ + ++ ++ A +  ALVDM AKCGN+ +A ++FE MP R+ +++
Sbjct: 399 SQLGALDVGIWMHHYVDKHNLTMNVA-LGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I GL++HG    A+S F  M+S GL PDE+ F  VL+AC H GLV+ G  +F  M +
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I P  +HY+C+VDLLGR G L+ A EL+ SMP EP A  WGAL    +++ ++ +GE
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGE 577

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             A++L EL+P + G YVLL+N+Y  A+ W     VR  M+ERG+ K PGCSS+
Sbjct: 578 RAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSI 631


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/594 (35%), Positives = 335/594 (56%), Gaps = 45/594 (7%)

Query: 25  RSAPINFPKPSCLLSA---LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH- 80
           +  P N+     L+ +   L+L++ C     + ++H+ +I  GL  D   ++  ++ C  
Sbjct: 39  KDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAI 98

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTF 139
           S    L Y   + N   N N F WN  ++GY ++   I    ++  ++R+  A+PD YT+
Sbjct: 99  SEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTY 158

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
           PL+ K C+          I   VI+ G D D+FV  ++I +     E+  ARK+FDE   
Sbjct: 159 PLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV 218

Query: 200 RNVVSWTAMIVGYASVG------DLVEAKTVFDLMPER-------------SNVSW---- 236
           R++VSW ++I GY   G      DL       ++MP+               N++     
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278

Query: 237 ----------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                           NAL+   +K  ++ +A+ LF+ M ++ VVS+TTM+ GYAK G +
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLL 338

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            SA  LF   P++DVV W+ALI G+ Q  +  EA+ +F +M + +V PD+  +V+ +SAC
Sbjct: 339 ESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSAC 398

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           SQ+G LD+  W+  Y+ + ++ ++ A +  ALVDM AKCGN+ +A ++FE MP R+ +++
Sbjct: 399 SQLGALDVGIWMHHYVDKHNLTMNVA-LGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I GL++HG    A+S F  M+S GL PDE+ F  VL+AC H GLV+ G  +F  M +
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I P  +HY+C+VDLLGR G L+ A EL+ SMP EP A  WGAL    +++ ++ +GE
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGE 577

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             A++L EL+P + G YVLL+N+Y  A+ W     VR  M+ERG+ K PGCSS+
Sbjct: 578 RAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSI 631


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 337/578 (58%), Gaps = 44/578 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVF---NRI 96
           L L++KCK      Q+HS IIK GL     + +  I  C  S +  LSY+ ++F    + 
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQH 91

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
              N F+WN+L++GYS +S  +    +F R++     P+ +TFP + K+C+   +  EG 
Sbjct: 92  HKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGK 151

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +HA  ++  +  +  V TS+I +Y    E+  AR VFD+   R+ VS+TA+I GY S G
Sbjct: 152 QLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQG 211

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV-SYTTM----- 270
            L +A+ +FD +P +  VSWNA+I G V+ G    A   F EM E NV+ + +TM     
Sbjct: 212 CLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLS 271

Query: 271 ---------------------------------IDGYAKVGDMTSARSLFEAAPDRDVVA 297
                                            ID Y K G+   AR LF+   ++DV++
Sbjct: 272 ACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVIS 331

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+ +I GY+     +EA+ +F  M   NV+P++   + ++ AC+ +G LDL  WV +Y+ 
Sbjct: 332 WNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYID 391

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           ++  + S A +  +L+DM AKCG ++ A  +F +M +R++ S+ +M+ G ++HGH  +A+
Sbjct: 392 KNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERAL 451

Query: 418 SLFDRMLSEGL-TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           +LF  M+++GL  PD++ F  VL+AC+  GLV+ G ++F +M   Y I P  +HY CM+D
Sbjct: 452 ALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMID 511

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           LL R    + A  L+ +M +EP  + WG+LL ACK +  +E GE VA RLF+LEP+NAG+
Sbjct: 512 LLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGA 571

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +VLLSNIYA A RW DV  +R+++ ++G++K+PGC+S+
Sbjct: 572 FVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSI 609


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/596 (35%), Positives = 335/596 (56%), Gaps = 47/596 (7%)

Query: 25  RSAPINFPKPSCLL---SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH- 80
           R  PIN+      +     L+L++KCKL  HL Q+ + +I  GL  D    +  I+ C  
Sbjct: 38  RDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCAL 97

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE---EAVPDKY 137
           S +  L YS  +   I NPN F WN  ++G+S++    E F ++ +++R    E+ PD +
Sbjct: 98  SESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+P++ K C+ +     G  I   V++  ++    V  + I ++    ++  ARKVFDE 
Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-------------SNVSW-------- 236
           P R++VSW  +I GY  +G+  +A  V+ LM                S+ S         
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277

Query: 237 ------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                             NAL+    K GD+  AR++FD + +R +VS+TTMI GYA+ G
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  +R LF+   ++DVV W+A+I G  Q  +  +A+ +F +M + N +PDE  ++  +S
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           ACSQ+G LD+  W+  Y+ +  + L+ A +  +LVDM AKCGN+  A  +F  +  R+ +
Sbjct: 398 ACSQLGALDVGIWIHRYIEKYSLSLNVA-LGTSLVDMYAKCGNISEALSVFHGIQTRNSL 456

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           +Y ++I GL++HG    A+S F+ M+  G+ PDE+ F  +L+AC H G+++ G  +F  M
Sbjct: 457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM 516

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           ++ + + P  +HY+ MVDLLGR G L+ A  L+ SMP+E  A+ WGALL  C+++ ++EL
Sbjct: 517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           GE  A +L EL+P ++G YVLL  +Y  A+ W D    R  M ERG+ KIPGCSS+
Sbjct: 577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/533 (38%), Positives = 309/533 (57%), Gaps = 44/533 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L Y+ +VF  I  PN  +WNT+L+G++ +S  +    ++VR++    +P+ Y+FP ++K+
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   +  EG  IHA V++ G   D +V TSLI +Y +   +  ARKVFD    R+VVS 
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
           TA+I GYAS GD   A+ VFD + ER  VSWNA+I G V+ G    A +LF EM   NV 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 265 ------VSYTT------------------------------------MIDGYAKVGDMTS 282
                 VS  +                                    +ID Y+K GD+ +
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  LFE    +DVV+W+ LI GY       EA+ +F +M      P++  L+S++ AC+ 
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAH 313

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           +G +D+  W+  Y+ +    ++    +  +L+DM AKCG+++ A ++F +M  R + S+ 
Sbjct: 314 LGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWN 373

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           +MI G ++HG    A  LF RM    + PD++ F  +L+ACSH GL++ G + F++M   
Sbjct: 374 AMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQD 433

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y + P  EHY CM+DLLG +G  K A E++++MP+EP    W +LL ACK + ++EL E 
Sbjct: 434 YNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAES 493

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            A +L ++EP+N+GSYVLLSNIYATA RW DV  VR  +  +G++K+PGCSS+
Sbjct: 494 FAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSI 546


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/522 (41%), Positives = 321/522 (61%), Gaps = 11/522 (2%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAH--FISLC-HSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           L+QV S +I  GL Q H L A      LC HS+  P   +T +F+ + +P+ F  NT+++
Sbjct: 23  LNQVLSQLIVSGLSQ-HPLFATSAIKKLCSHSVTFP--RATFLFDHLHHPDAFHCNTIIR 79

Query: 110 GYSQNSRFIEVFTIFV-RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            Y++   F      +  +++     P+ YTFPL+IK C+ + S REG   HA ++++G  
Sbjct: 80  AYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFG 139

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            D+F   SLI +Y     I  AR VFDE    ++VS+ +MI GY   G++  A+ VF+ M
Sbjct: 140 SDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEM 199

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
           P+R  +SWN LI G V +GDL +A +LF+ +PER+ VS+  MIDG A+VG+++ A   F+
Sbjct: 200 PDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFD 259

Query: 289 AAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGN 345
             P   R+VV+W+++++ +A+     E + +F  M   +   P+E  LVS+++AC+ +G 
Sbjct: 260 RMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGK 319

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L +  WV S++ RS+       ++  L+ M AKCG MD A  +F+ MP R VVS+ SMI 
Sbjct: 320 LSMGMWVHSFI-RSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIM 378

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G  +HG G +A+ LF  M   G  P++  F  VL+AC+H G+V +GW +F+ MQ VY I 
Sbjct: 379 GYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIE 438

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY CMVDLL R G ++++ EL+  +PV+  ++ WGALL  C  + D ELGE+VA R
Sbjct: 439 PKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKR 498

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
             ELEPQ+ G Y+LLSN+YA   RW DV  VR  +KE+GL+K
Sbjct: 499 FIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQK 540


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 336/579 (58%), Gaps = 46/579 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
           +L+L+  CK    L  +H+ +IK GL   +  ++  I  C  + +P    L Y+ +VF  
Sbjct: 36  SLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFC--ILSPHFEGLPYAISVFKT 93

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  PN  +WNT+ +G++ +S  +    ++V +I    +P+ YTFP V+K+C+   + +EG
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH  V++ G D D++V TSLI +Y +   +  A KVFD+ P R+VVS+TA+I GYAS 
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----------V 265
           G +  A+ +FD +P +  VSWNA+I G  + G+ + A +LF +M + NV          V
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 266 S-----------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           S                                +ID Y+K G++ +A  LFE  P +DV+
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ LI GY       EA+ +F +M      P++  ++S++ AC+ +G +D+  W+  Y+
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
            +    ++ A  +  +L+DM AKCG+++ A ++F ++ ++ + S+ +MI G ++HG    
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           +  LF RM   G+ PD++ F  +L+ACSH G+++ G   F  M   Y + P  EHY CM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLG +G  K A E++N M +EP    W +LL ACK++ ++ELGE  A  L ++EP+N G
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SYVLLSNIYA+A RW +V   R+ + ++G++K+PGCSS+
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/579 (36%), Positives = 341/579 (58%), Gaps = 46/579 (7%)

Query: 4   IDEPNTPC-KHKSCSSMLPNCSRSAPINF-PKPSCLLSA--LTLIKKCKLQTHLHQVHSH 59
           I +P+ P  +H    ++ P+  +  PIN+    S +LS   L+L++KCK  + L Q+ S 
Sbjct: 15  IQKPSLPSSRHIHTRALSPH--KENPINWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQ 72

Query: 60  IIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGY--SQNSR 116
           ++  GL +D    +  I+ C  S    L Y T +     NPNTF WN  ++G+  S+N R
Sbjct: 73  MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 132

Query: 117 FIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
             E   ++ R+++ +   PD YT+PL+ KAC+ +  +R G+ I   V+  G D D+FV  
Sbjct: 133 --EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSN 190

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           ++I L      +SC                          GDL  A+ +FD    R  VS
Sbjct: 191 AVIHLL-----VSC--------------------------GDLDGARKMFDKSCVRDLVS 219

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           WN++I G    G+L SAR+LFD M  + +VS+TTM+ GYA+ G +  A  LF+  PD+DV
Sbjct: 220 WNSMINGYC--GNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDV 277

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V W+A+I GY    +  EA+ +F++M + N+ PDE  +VS +SACSQ+G LD+  W+  Y
Sbjct: 278 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 337

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + +  + L+ A +  AL+DM AKCG + +A ++F+ +P R+ +++ ++I GL++HG+   
Sbjct: 338 IEKHELSLNVA-LGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHG 396

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A++ F  M+   + PDEV F  +L+AC H GLVE+G ++F  M + + + P  +HY+CMV
Sbjct: 397 AIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMV 456

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR G L+ A EL+ SMP+E  A  WGAL  AC+++ ++ +GE  A++L +++P ++G
Sbjct: 457 DLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSG 516

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            YVLL+N+Y  A+ W +    R  M++RG+ K P   SL
Sbjct: 517 IYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWSL 555


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 320/544 (58%), Gaps = 19/544 (3%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +LI     +  L Q+H+ ++  GL+    L+   I    S    ++++  VF+ +  P  
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD-ITFARQVFDDLPRPQI 84

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F WN +++GYS+N+ F +   ++  +      PD +TFP ++KACS +  ++ G  +HA 
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLV 219
           V R G D DVFV   LI LY K + +  AR VF+   +PER +VSWTA++  YA  G+ +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 220 EAKTVFDLMPERS-NVSWNALI---GGLVKIGDLRSARQLFD-------EMPERNVVSYT 268
           EA  +F  M +      W AL+        + DL+  R +         E+    ++S  
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           TM   YAK G + +A+ LF+     +++ W+A+ISGYA+NG   EA+ +F +M +K+V+P
Sbjct: 265 TM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D   + S +SAC+QVG+L+ +  +  Y+ RS        + +AL+DM AKCG+++ A  +
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+   +RDVV + +MI G  +HG  R+A+SL+  M   G+ P++V F  +L AC+H G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
            +GW FF  M + + I P  +HYAC++DLLGR GHL  AYE++  MPV+P  + WGALL 
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           ACK +  +ELGE  A +LF ++P N G YV LSN+YA A  W  V  VR +MKE+GL K 
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 569 PGCS 572
            GCS
Sbjct: 560 VGCS 563


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 314/526 (59%), Gaps = 33/526 (6%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP--NTFLWNTLLK 109
           H+ ++H+ ++K+GL  +    A  +S  ++L   L  S  VF+ I +P  + FL NT+L+
Sbjct: 367 HVRELHAQVLKQGLHLNPRAAARLVS-AYALLRLLPSSRRVFDAIRDPHADAFLANTMLR 425

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS--HVLSVREGTAIHAAVIRWGV 167
            Y+      +    F  + R     D +T+  +IKA S   V  VR   A+H+ V++ G 
Sbjct: 426 AYALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGS 478

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
            ED FVG +LID Y K    S ARKVFDEMPER+VVSW   +      G+L  A+ +FD 
Sbjct: 479 VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDE 538

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPE+  VSWN ++ G  K G++ +A +LF  MPERNVVS++TM+ GY K GD+  AR +F
Sbjct: 539 MPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIF 598

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P +++V W+ +                   M   +V+ D   +VS+++AC++ G+L 
Sbjct: 599 DKMPGKNLVTWTIM-------------------MKEASVELDVAAVVSILAACAESGSLS 639

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKG 406
           L   +  Y+ + ++  S  HV  AL+DM  KCG ++RA  +F+T    +D VS+ S+I G
Sbjct: 640 LGKRIHRYVRKRNLGRS-THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGG 698

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            ++HGHG +A+ LF +M  +G  PD V    VL+AC+H+G V++G R+F  M+  Y I+P
Sbjct: 699 FAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMP 758

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHY CM+DLLGR G +K A +L+ SMP EP+   WG+LL AC+L+ ++E  E+  N L
Sbjct: 759 QIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNEL 818

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L+P NAG+Y +LSNIYA A +W D+   R +MK  G +K  G S
Sbjct: 819 SKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSS 864


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 320/549 (58%), Gaps = 37/549 (6%)

Query: 56  VHSHIIKKGLE-QDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +H+H+I+   E QD SL    +S+   L + L  +  VF+ +   N   W  ++  Y+++
Sbjct: 86  LHAHMIQTQFECQDISLGNKLVSIYVKLGS-LVEARRVFDEMPVKNVVSWTAMIAAYARH 144

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E    F  +      P+ +TF  ++ AC+ +  + E    H  +++ G + +VFVG
Sbjct: 145 EHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVG 201

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             L+D+Y KR  I  AR++FD+MP+R+VVSW AMI GY   G + +A  +F  +P+R  +
Sbjct: 202 NGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVI 261

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           +WN ++ G  + GD+ +A +LF++MPE+N+VS+ TMI GY + G +  A  LF+  P+R+
Sbjct: 262 TWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERN 321

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNV---------------------------- 326
           V++W+A+ISG+AQNGQ +EA+K+F  M   NV                            
Sbjct: 322 VISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQM 381

Query: 327 ---QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              +P+      ++ AC+ +  L+  N     + RS    S   V   LV M AKCG+++
Sbjct: 382 VDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQ-SDVLVGNTLVGMYAKCGSIE 440

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A ++F+ M  +D  S  +MI G +I+G  ++++ LF++M   GL PD V F  VL+AC 
Sbjct: 441 DARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACC 500

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV++G ++F+ M   Y I P+ EHY CM+DLLGR G    A +L+N MP++P A  W
Sbjct: 501 HAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMW 560

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           G+LL AC+ +++I+LGE VA  L  L PQN   YVLLSNIYA A RW D+  VR++MK+R
Sbjct: 561 GSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDR 620

Query: 564 GLRKIPGCS 572
            ++K  GCS
Sbjct: 621 KVKKKLGCS 629



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 31/235 (13%)

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            L+    + G+  EA+ I  DM    + P      SL+  C    +L  +  + +++ ++
Sbjct: 34  GLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQT 93

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             +     +   LV +  K G++  A  +F+ MP ++VVS+ +MI   + H HG++A+  
Sbjct: 94  QFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGF 153

Query: 420 FDRMLSEGLTPDEVAFTIVLTACS--------HVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
           F  M   G+ P+   F  +L AC+        H  +V+ G   FE+  NV+         
Sbjct: 154 FYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGG---FES--NVFV-------G 201

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG----------ACKLYSDI 516
             +VD+  + G ++ A EL + MP +    +W A++           A KL+ +I
Sbjct: 202 NGLVDMYAKRGCIEFARELFDKMP-QRDVVSWNAMIAGYVQNGLIEDALKLFQEI 255



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           M PN    A +    P+C  +AL ++++       ++ H  +I+ G + D  LV + +  
Sbjct: 384 MKPNTETFAIV---LPAC--AALAVLEQG------NEAHEVVIRSGFQSD-VLVGNTLVG 431

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            ++    +  +  VF+R+   ++   + ++ GY+ N    E   +F ++      PD+ T
Sbjct: 432 MYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVT 491

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           F  V+ AC H   V EG      + R + +   +     +IDL G+      A  + ++M
Sbjct: 492 FVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKM 551

Query: 198 P 198
           P
Sbjct: 552 P 552


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 315/553 (56%), Gaps = 15/553 (2%)

Query: 33  KPSC----LLSALTLIKKCKLQTHLHQVHSHIIKKG--LEQDHSLVAHFISLCHSLATPL 86
           +P C    L + L+ ++ C+  +H  Q H+ ++  G        L  H +    S+ +  
Sbjct: 2   RPPCPAVALPTLLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAA 61

Query: 87  SYSTAVFNRIVNP---NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
           + +  VF R+  P   + F WNT ++ ++  +R       F R+ R    PD YTFP V+
Sbjct: 62  ALADVVFARLPLPAARDPFAWNTAIRLHAP-ARPRAALLYFARMRRCGVRPDAYTFPAVL 120

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--ERN 201
           KAC      R G  +HA  +R G+  D+F   +LI  Y +  +I   RKVFDE     R+
Sbjct: 121 KACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRD 180

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD--LRSARQLFDEM 259
           +VSW +M+ GY   G++  A+ +FD MP++   SW  LI G  K G   +  AR+LFD+M
Sbjct: 181 LVSWNSMVAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQM 240

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PER++V + +MIDGYA+ G M  ARSLFE  P+R+V++WS +I G+   G+  EA++ F 
Sbjct: 241 PERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQ 300

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M    ++PD    V  +SAC+Q+G L+   W+ SYL +  + LS   V  AL+DM  KC
Sbjct: 301 SMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKL-LSDVVVQTALIDMYVKC 359

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +D A  +FE+M  R VV++  MI GL  HG G  AV+LF RM +E +  D+++   +L
Sbjct: 360 GCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGML 419

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           TAC+H GLV +G   F  M+  + I P  EHY  +VDLLGR G L  A   + +MP+EP 
Sbjct: 420 TACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPT 479

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
              WG+LL AC+ +S +EL EL   RL +L   ++G YVLLSNIYA    W DV  +R  
Sbjct: 480 PELWGSLLAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKL 539

Query: 560 MKERGLRKIPGCS 572
           M + G+RK  G S
Sbjct: 540 MSDEGMRKDIGRS 552


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/539 (35%), Positives = 325/539 (60%), Gaps = 10/539 (1%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPNT 101
           ++++CK    L+++H+H+IK  L     +  + + S    L T + Y+ ++F +I  P++
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDS 89

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
             +N +++G++      E   +F  +      PD++TFP ++K CS + ++ EG  IHA 
Sbjct: 90  PAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHAL 149

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           +++ G     FV  +LI +Y    E+  AR+VFDEM ERNV +W +M  GY   G+  E 
Sbjct: 150 IMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEV 209

Query: 222 KTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDG 273
             +F  M E       V+  +++    ++ DL     +   + E+    N    T+++D 
Sbjct: 210 VKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDM 269

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK G + +AR LF+    RDVVAWSA+ISGY+Q  +  EA+ +F +M   N+ P+E  +
Sbjct: 270 YAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITM 329

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           VS++S+C+ +G L+   WV  ++ +  M L+   +  AL+D  AKCG+++ + E+F  MP
Sbjct: 330 VSILSSCAVLGALETGKWVHFFIKKKRMKLT-VTLGTALMDFYAKCGSVESSIEVFGKMP 388

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++V+S+  +I+GL+ +G G++A+  F  ML + + P++V F  VL+ACSH GLV++G  
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F +M   + I P  EHY CMVD+LGR G ++ A++ + +MP++P+A  W  LL +CK++
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++E+GE    +L  LEP ++G Y+LLSNIYA+  RW D   VR +MKE+G++K PGCS
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCS 567


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 320/544 (58%), Gaps = 19/544 (3%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +LI     +  L Q+H+ ++  GL+    L+   I    S    ++++  VF+ +  P  
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD-ITFARQVFDDLPRPQI 84

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F WN +++GYS+N+ F +   ++  +      PD +TFP ++KACS +  ++ G  +HA 
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLV 219
           V R G D DVFV   LI LY K + +  AR VF+   +PER +VSWTA++  YA  G+ +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 220 EAKTVFDLMPERS-NVSWNALI---GGLVKIGDLRSARQLFD-------EMPERNVVSYT 268
           EA  +F  M +      W AL+        + DL+  R +         E+    ++S  
Sbjct: 205 EALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           TM   YAK G + +A+ LF+     +++ W+A+ISGYA+NG   EA+ +F +M +K+V+P
Sbjct: 265 TM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D   + S +SAC+QVG+L+ +  +  Y+ RS        + +AL+DM AKCG+++ A  +
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+   +RDVV + +MI G  +HG  R+A+SL+  M   G+ P++V F  +L AC+H G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
            +GW FF  M + + I P  +HYAC++DLLGR GHL  AYE++  MPV+P  + WGALL 
Sbjct: 441 REGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           ACK +  +ELGE  A +LF ++P N G YV LSN+YA A  W  V  VR +MKE+GL K 
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559

Query: 569 PGCS 572
            GCS
Sbjct: 560 VGCS 563


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 327/536 (61%), Gaps = 16/536 (2%)

Query: 46  KCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC----------HSLATPLSYSTAVFNR 95
           K K    L ++H+ I++  L  +  L+  FIS            +   + + ++   FN 
Sbjct: 20  KTKTFKTLLEIHAFILRNSLHNNLHLLTKFISSSTSLALSTPRRNDAVSIVQHARLFFNH 79

Query: 96  IV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSV 152
                 + FL NT++  +    +F   FT++ +  ++    P  YTF L++K CS   + 
Sbjct: 80  TPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLILKGCSVSDAK 139

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           R+G  IH  V++     D++VGTSL+D+Y K  ++  ARKVFDEM  R++VSWTA+IVGY
Sbjct: 140 RQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGY 199

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
           A  GD+VEA+ +FD M +R   ++N +I G VK+G +  AR LFD+M  +NV+S+T+M+ 
Sbjct: 200 ARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVH 259

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEF 331
           GY++ GD+  AR LF+  P+++V++W+A+I GY QNG+  +A+K+F +M    +V+ +E 
Sbjct: 260 GYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEV 319

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            +VS++ A + +  LDL  WV  ++ R+ +D S  HV  ALVDM AKCG + +A  +FE 
Sbjct: 320 TVVSVLPAVADLSALDLGGWVHGFVQRNQLDGS-VHVCNALVDMYAKCGEIGKAKLVFEE 378

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  +D  S+ ++I G  ++G  ++A+ +F  ML EG  P+++  T VL+AC+H GLVE+G
Sbjct: 379 MTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEG 438

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
            R FEAM+  + IVP  EHY CM+DLLGR G L  A +L+ +MP +P+     + L AC 
Sbjct: 439 RRCFEAMER-FGIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTSFLFACC 497

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            + D+   E +     ++E + AG YV+L N+YAT  RW DV  V+  MK+RG  K
Sbjct: 498 YFEDVSRAERILKVAVKMEKEGAGDYVMLRNLYATERRWADVEDVKEMMKKRGSNK 553


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 315/527 (59%), Gaps = 38/527 (7%)

Query: 51  TH-LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           TH L Q+H  + +  +     +V  FIS C SL   + Y+ ++F R    N++L+N L++
Sbjct: 55  THKLRQIHGQLYRCNVFSSSRVVTQFISSCSSL-NSVDYAISIFQRFELKNSYLFNALIR 113

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           G ++NSRF    + FV +++ +  PD+ TFP V+K+ + + +   G A+H  ++++G++ 
Sbjct: 114 GLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEF 173

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPER----NVVSWTAMIVGYASVGDLVEAKTVF 225
           D FV  SL+D+Y K +E+  A KVFDE PE     +V+ W  +I GY  +GDLV+A  +F
Sbjct: 174 DSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELF 233

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           D MP++   SWN+LI G +K+GD+  A++LF +MPE+NVVS+TTM++G            
Sbjct: 234 DSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG------------ 281

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
                              ++QNG P++A++ F  M  +  +P+++ +VS +SAC+++G 
Sbjct: 282 -------------------FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGA 322

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           LD    + +YLS +   L+   +  ALVDM AKCGN++ A ++F     + ++ +  MI 
Sbjct: 323 LDAGLRIHNYLSGNGFKLNLV-IGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIW 381

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G +IHGH R+A+  F+ M   G  PD V F  VL ACSH G V +G +FF+ M+  Y I 
Sbjct: 382 GWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIE 441

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           PS +HY  +VD+LGR G L  A + + +MP+ P    WGAL  AC+ + ++E+ EL + +
Sbjct: 442 PSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKK 501

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L +LEP++ GSYV LSN YA+  RW D   VR  M++ G  K PG S
Sbjct: 502 LLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWS 548


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 283/441 (64%), Gaps = 7/441 (1%)

Query: 135 DKYTFPLVIKACS--HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           D +T+  +IKA S   V  VR   A+H+ V++ G  ED FVG +LID Y K    S ARK
Sbjct: 5   DSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           VFDEMPER+VVSW   +      G+L   + +FD MPE+  VSWN ++ G  K G++ +A
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 121

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
            +LF  MPERNVVS++TM+ GY K GD+  AR +F+  P +++V W+ ++S  AQ G  D
Sbjct: 122 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 181

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA K+F+ M   +V+ D   +VS+++AC++ G+L L   +  Y+ + ++  S  HV  AL
Sbjct: 182 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS-THVCNAL 240

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +DM  KCG ++RA  +F+T    +D VS+ S+I G ++HGHG +A+ LF +M  +G  PD
Sbjct: 241 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 300

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            V    VL+AC+H+G V++G R F  M+  Y I+P  EHY CM+DLLGR G +K A +L+
Sbjct: 301 AVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 360

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMP EP+   WG+LL AC+L+ ++E  E+  N L +L+P NAG+Y +LSNIYA A +W 
Sbjct: 361 KSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 420

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D+   R +MK  G +K  G S
Sbjct: 421 DMAKARMQMKGTGSQKTAGSS 441



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 148/311 (47%), Gaps = 48/311 (15%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +T  WNT+L GY++       F +F R+      P++               
Sbjct: 93  LFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRM------PER--------------- 131

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                     V+ W         ++++  Y K+ ++  AR +FD+MP +N+V+WT M+  
Sbjct: 132 ---------NVVSW---------STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 173

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
            A  G + EA  +F  M E S      +  +++    + G L   +++   + +RN+   
Sbjct: 174 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 233

Query: 268 T----TMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           T     +ID + K G +  A  +F+     +D V+W+++I G+A +G  D+A+++F+ M 
Sbjct: 234 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 293

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
            +   PD   +++++SAC+ +G +D      S + R +  + +      ++D+  + G +
Sbjct: 294 QQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLI 353

Query: 383 DRAAELFETMP 393
             A +L ++MP
Sbjct: 354 KEAVDLIKSMP 364



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F+++ + N   W  ++   +Q     E   +F ++       D      ++ A
Sbjct: 149 LEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAA 208

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD-EMPERNVVS 204
           C+   S+  G  IH  V +  +     V  +LID++ K   ++ A  VFD E  +++ VS
Sbjct: 209 CAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVS 268

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           W ++I G+A  G   +A  +F  M ++      V+   ++     +G +   R+ F  M 
Sbjct: 269 WNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM- 327

Query: 261 ERN------VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
           ER+      +  Y  MID   + G +  A  L ++ P + + V W +L+S
Sbjct: 328 ERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 377


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 283/441 (64%), Gaps = 7/441 (1%)

Query: 135 DKYTFPLVIKACS--HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           D +T+  +IKA S   V  VR   A+H+ V++ G  ED FVG +LID Y K    S ARK
Sbjct: 128 DSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 184

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           VFDEMPER+VVSW   +      G+L   + +FD MPE+  VSWN ++ G  K G++ +A
Sbjct: 185 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 244

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
            +LF  MPERNVVS++TM+ GY K GD+  AR +F+  P +++V W+ ++S  AQ G  D
Sbjct: 245 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 304

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA K+F+ M   +V+ D   +VS+++AC++ G+L L   +  Y+ + ++  S  HV  AL
Sbjct: 305 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS-THVCNAL 363

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +DM  KCG ++RA  +F+T    +D VS+ S+I G ++HGHG +A+ LF +M  +G  PD
Sbjct: 364 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 423

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            V    VL+AC+H+G V++G R F  M+  Y I+P  EHY CM+DLLGR G +K A +L+
Sbjct: 424 AVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 483

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMP EP+   WG+LL AC+L+ ++E  E+  N L +L+P NAG+Y +LSNIYA A +W 
Sbjct: 484 KSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 543

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D+   R +MK  G +K  G S
Sbjct: 544 DMAKARMQMKGTGSQKTAGSS 564



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 156/329 (47%), Gaps = 49/329 (14%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +T  WNT+L GY++       F +F R+      P++               
Sbjct: 216 LFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRM------PERN-------------- 255

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                     V+ W         ++++  Y K+ ++  AR +FD+MP +N+V+WT M+  
Sbjct: 256 ----------VVSW---------STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 296

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
            A  G + EA  +F  M E S      +  +++    + G L   +++   + +RN+   
Sbjct: 297 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 356

Query: 268 T----TMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           T     +ID + K G +  A  +F+     +D V+W+++I G+A +G  D+A+++F+ M 
Sbjct: 357 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 416

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
            +   PD   +++++SAC+ +G +D      S + R +  + +      ++D+  + G +
Sbjct: 417 QQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLI 476

Query: 383 DRAAELFETMP-NRDVVSYCSMIKGLSIH 410
             A +L ++MP   + V + S++    +H
Sbjct: 477 KEAVDLIKSMPWEPNEVIWGSLLSACRLH 505



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F+++ + N   W  ++   +Q     E   +F ++       D      ++ A
Sbjct: 272 LEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAA 331

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD-EMPERNVVS 204
           C+   S+  G  IH  V +  +     V  +LID++ K   ++ A  VFD E  +++ VS
Sbjct: 332 CAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVS 391

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           W ++I G+A  G   +A  +F  M ++      V+   ++     +G +   R+ F  M 
Sbjct: 392 WNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM- 450

Query: 261 ERN------VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
           ER+      +  Y  MID   + G +  A  L ++ P + + V W +L+S
Sbjct: 451 ERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 500


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 283/441 (64%), Gaps = 7/441 (1%)

Query: 135 DKYTFPLVIKACS--HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           D +T+  +IKA S   V  VR   A+H+ V++ G  ED FVG +LID Y K    S ARK
Sbjct: 435 DSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 491

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           VFDEMPER+VVSW   +      G+L   + +FD MPE+  VSWN ++ G  K G++ +A
Sbjct: 492 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 551

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
            +LF  MPERNVVS++TM+ GY K GD+  AR +F+  P +++V W+ ++S  AQ G  D
Sbjct: 552 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 611

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA K+F+ M   +V+ D   +VS+++AC++ G+L L   +  Y+ + ++  S  HV  AL
Sbjct: 612 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS-THVCNAL 670

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +DM  KCG ++RA  +F+T    +D VS+ S+I G ++HGHG +A+ LF +M  +G  PD
Sbjct: 671 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 730

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            V    VL+AC+H+G V++G R F  M+  Y I+P  EHY CM+DLLGR G +K A +L+
Sbjct: 731 AVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 790

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMP EP+   WG+LL AC+L+ ++E  E+  N L +L+P NAG+Y +LSNIYA A +W 
Sbjct: 791 KSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWS 850

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D+   R +MK  G +K  G S
Sbjct: 851 DMAKARMQMKGTGSQKTAGSS 871



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 156/329 (47%), Gaps = 49/329 (14%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +T  WNT+L GY++       F +F R+      P++               
Sbjct: 523 LFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRM------PERN-------------- 562

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                     V+ W         ++++  Y K+ ++  AR +FD+MP +N+V+WT M+  
Sbjct: 563 ----------VVSW---------STMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSA 603

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
            A  G + EA  +F  M E S      +  +++    + G L   +++   + +RN+   
Sbjct: 604 CAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRS 663

Query: 268 T----TMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           T     +ID + K G +  A  +F+     +D V+W+++I G+A +G  D+A+++F+ M 
Sbjct: 664 THVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMK 723

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
            +   PD   +++++SAC+ +G +D      S + R +  + +      ++D+  + G +
Sbjct: 724 QQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLI 783

Query: 383 DRAAELFETMP-NRDVVSYCSMIKGLSIH 410
             A +L ++MP   + V + S++    +H
Sbjct: 784 KEAVDLIKSMPWEPNEVIWGSLLSACRLH 812



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F+++ + N   W  ++   +Q     E   +F ++       D      ++ A
Sbjct: 579 LEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAA 638

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD-EMPERNVVS 204
           C+   S+  G  IH  V +  +     V  +LID++ K   ++ A  VFD E  +++ VS
Sbjct: 639 CAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVS 698

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           W ++I G+A  G   +A  +F  M ++      V+   ++     +G +   R+ F  M 
Sbjct: 699 WNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM- 757

Query: 261 ERN------VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
           ER+      +  Y  MID   + G +  A  L ++ P + + V W +L+S
Sbjct: 758 ERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 807


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 304/539 (56%), Gaps = 10/539 (1%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TLI       HL QVH  +I   L  D  LV   +           YS  +F+    PN 
Sbjct: 18  TLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRT-LFFRQTHYSFLLFSHTQFPNI 76

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           FL+NTL+ G+  N  F E   +F+ + +       +TFPLV+KAC+   + + G  +H+ 
Sbjct: 77  FLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSL 136

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           V++ G + DV   TSL+ +Y     ++ A KVF+E+PER+VV+WTA+  GY + G   EA
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREA 196

Query: 222 KTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDG 273
             +F  M E      +     ++   V +GDL S   +   M E    +N    TT+++ 
Sbjct: 197 IDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNL 256

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK G M  ARS+F++  ++D+V WS +I GYA N  P E ++ F  M  +N++PD+F +
Sbjct: 257 YAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSI 316

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           V  +S+C+ +G LDL  W  S + R H  L+   +  AL+DM AKCG M R  E+F+ M 
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +D+V   + I GL+ +GH + + ++F +    G++PD   F  +L  C H GL++DG R
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           FF A+  VYA+  + EHY CMVDL GR G L  AY L+  MP+ P+A  WGALL  C+L 
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            D +L E V   L  LEP NAG+YV LSNIY+ + RW +   VR  M  +G++KIPG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYS 554


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/623 (36%), Positives = 336/623 (53%), Gaps = 108/623 (17%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           +HL Q+H+ II   L   +  VA  I+ C  L  P  Y+  +FN  +NPN F++ ++L+ 
Sbjct: 15  SHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC--------SHVLSVREGTA--IHA 160
           YS      +V  +F  +      PD + +P++IK+         +HVL +  G+   +  
Sbjct: 75  YSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGHGSDAFVRN 134

Query: 161 AVI---------------------------------------------RWGVD----EDV 171
           AVI                                             +W  D     +V
Sbjct: 135 AVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV 194

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-- 229
              T+++  Y K K++  AR+ FD MPER+VVSW AM+ GYA  G   E   +FD M   
Sbjct: 195 ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNA 254

Query: 230 --ERSNVSW-----------------------------------NALIGGLVKIGDLRSA 252
             E    +W                                    AL+    K G + +A
Sbjct: 255 GIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAA 314

Query: 253 RQLFDEMPE-RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           R++FDE+   RN V++  MI  Y +VG++ SAR LF   P R+VV W+++I+GYAQNGQ 
Sbjct: 315 RRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQS 374

Query: 312 DEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVI 369
             A+++F +M + K + PDE  +VS++SAC  +G L+L NWV  +L+ + + LS   H  
Sbjct: 375 AMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH-- 432

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            A++ M ++CG+M+ A  +F+ M  RDVVSY ++I G + HGHG +A++L   M   G+ 
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD V F  VLTACSH GL+E+G + FE++++     P+ +HYACMVDLLGR G L+ A  
Sbjct: 493 PDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKR 547

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MP+EPHA  +G+LL A +++  +ELGEL AN+LFELEP N+G+++LLSNIYA+A R
Sbjct: 548 TMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGR 607

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W DV  +R  MK+ G++K  G S
Sbjct: 608 WKDVERIREAMKKGGVKKTTGWS 630


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 336/596 (56%), Gaps = 40/596 (6%)

Query: 9   TPCKHKSCSSMLPNCSRSAPINFPKPSCLLSAL-------------------TLIKKCKL 49
           +P   K+     P   R   + F K  C  SAL                   +LI     
Sbjct: 9   SPLATKNQKVTTPQIPRCFVLKFVKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTH 68

Query: 50  QTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           + HL Q+H+ ++  GL+ +  L+   ++   +L   + Y+  +F+    P+ F+WN +++
Sbjct: 69  KRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQ-ICYARKLFDEFCYPDVFMWNAIIR 127

Query: 110 GYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            YS+N+ + +   ++ R +R   V PD +TFP V+KAC+ +L       IH  +I++G  
Sbjct: 128 SYSRNNMYRDTVEMY-RWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFG 186

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            DVFV   L+ LY K   I  A+ VFD +  R +VSWT++I GYA  G  VEA  +F  M
Sbjct: 187 SDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM 246

Query: 229 PERS-NVSWNALIGGL---VKIGDLRSARQL--------FDEMPERNVVSYTTMIDGYAK 276
                   W AL+  L     + DL   R +         ++ P   ++S T     YAK
Sbjct: 247 RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPAL-LISLTAF---YAK 302

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G +T A+S F+     +V+ W+A+ISGYA+NG  +EAV +F  M S+N++PD   + S 
Sbjct: 303 CGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSA 362

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + A +QVG+L+L+ W+D Y+S+S+   S   V  +L+DM AKCG+++ A  +F+   ++D
Sbjct: 363 VLASAQVGSLELAQWMDDYVSKSNYG-SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKD 421

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VV + +MI G  +HG G +A++L+  M   G+ P++V F  +LTAC+H GLV++GW  F 
Sbjct: 422 VVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFH 481

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M++ + IVP  EHY+C+VDLLGR G+L  A   +  +P+EP  S WGALL ACK+Y  +
Sbjct: 482 CMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCV 540

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            LGE  AN+LF L+P N G YV LSN+YA++  W  V  VR  M+E+GL K  G S
Sbjct: 541 TLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYS 596


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 304/527 (57%), Gaps = 40/527 (7%)

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
           Y+ +VF  I  PN  +WNT+L+GY+ +S  +    ++V +I    +P+ YTFP ++K+C+
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
              +  EG  IH  V++ G + D++V TSLI +Y +   +  A KVFD    R+VVS+TA
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           +I GYAS G++  A+ +FD +P +  VSWNA+I G  + G  + A +LF EM + NV   
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 267 --------------------------------------YTTMIDGYAKVGDMTSARSLFE 288
                                                    +ID Y+K G + +A  LFE
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
               +DVV+W+ LI GY       EA+ +F +M      P++  +VS++ AC+ +G +D+
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 349 SNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
             W+  Y+ +   D++ A  +  +L+DM AKCG+++ A ++F +M ++ + S+ +MI G 
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           ++HG       LF RM   G+ PD++ F  +L+ACSH G ++ G   F++M   Y I P 
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CM+DLLG +G  K A E++ +MP+EP    W +LL AC+ + ++EL E  A  L 
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLM 497

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++EP+N GSYVLLSNIYATA  W +V  VR+ +  +G++K+PGCSS+
Sbjct: 498 KVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSI 544



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 195/421 (46%), Gaps = 44/421 (10%)

Query: 43  LIKKC---KLQTHLHQVHSHIIKKGLEQD----------------------------HSL 71
           L+K C   K      Q+H H++K G E D                            H  
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 72  VAHFISLCHSLATPLSYSTA--VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
           V  + +L    A+  +  +A  +F+ I   +   WN ++ GY++   + E   +F  +++
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
               PD+ T   V+ AC+   SV  G  +H+ +   G   ++ +  +LIDLY K  ++  
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVK 245
           A  +F+ +  ++VVSW  +I GY  +    EA  +F  M       ++V+  +++     
Sbjct: 252 ACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAH 311

Query: 246 IGDLRSAR--QLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +G +   R   ++ +   ++V +     T++ID YAK GD+ +A  +F +   + + +W+
Sbjct: 312 LGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 371

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+I G+A +G+ +    +FS M    ++PD+   V L+SACS  G LDL   +   +++ 
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQD 431

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVS 418
           +    +      ++D+    G    A E+ +TMP   D V +CS++K    HG+   A S
Sbjct: 432 YDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAES 491

Query: 419 L 419
            
Sbjct: 492 F 492


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 315/524 (60%), Gaps = 10/524 (1%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN--TFLWNTLLK 109
           H+ ++H+ ++K GL  D    +  IS  ++L   L  S  +F    NP   TFL NTLL+
Sbjct: 73  HVQELHAQLLKHGLHLDPLAASKLIS-SYALQRRLPASRRIFASFPNPQATTFLPNTLLR 131

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
            Y+ N+      ++F  + +     D +T+  +IKA S    +    A+H+ V++ G  E
Sbjct: 132 AYALNALPHAAVSLFSAMPQR----DSFTYSFLIKALSSS-GLTPLRAVHSHVVKLGSIE 186

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D +VG +LID Y K      A KVF+EMP R+ VSW + +      G++  A+ +FD MP
Sbjct: 187 DTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMP 246

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           ++  VSWN ++ G  K G +  A +LF  MPERNVVS++T++ GY K GD+  AR +F+ 
Sbjct: 247 DKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDK 306

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            P +++V W+ ++S  AQNG  +EA ++F+ M    V+ D   +VS+++AC++ G+L L 
Sbjct: 307 MPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALG 366

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET-MPNRDVVSYCSMIKGLS 408
             +  Y+    +  S  HV  A++DM  KCG ++RA  +F+T +  +D VS+ ++I G +
Sbjct: 367 KRIHRYVRTRQLGRS-THVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFA 425

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
           +HGHG +A+  F +M  +G  PD V    VL+AC+H+G VE+G + F  M+  Y IVP  
Sbjct: 426 MHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQI 485

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           EHY CM+DLLGR G ++ A  L+ SMP +P+   WG+LL AC+L+ ++E  E+  N L +
Sbjct: 486 EHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSK 545

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+P NAG+Y +LSNIYA A +W D+   R +MK  G +K  G S
Sbjct: 546 LQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSS 589


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 312/529 (58%), Gaps = 40/529 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LSY+ ++F  I  PN  +WNT+ +G++ NS  +    ++V +I    +P+ Y+FP ++K+
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   ++ EG  IH  V++ G D D++V TSLI +Y +   +  A KVFD    R+VVS+
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
           TA+I GYAS G +  A+ +FD +  +  VSWNA+I G V+  + + A +L+ +M + NV 
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 265 ---------VS-----------------------------YTTMIDGYAKVGDMTSARSL 286
                    VS                                +ID Y+K G++ +A  L
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+    +DV++W+ LI G+       EA+ +F +M      P++  ++S++ AC+ +G +
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 314

Query: 347 DLSNWVDSYLSRSHMDLSRAH-VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           D+  W+  Y+++    ++ A  ++ +L+DM AKCG+++ A ++F++M  R + S+ +MI 
Sbjct: 315 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIF 374

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G ++HG    A  LF +M   G+ PD++ F  +L+ACSH G+++ G   F +M   Y I 
Sbjct: 375 GFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKIT 434

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY CM+DLLG  G  K A E++ +MP+EP    W +LL ACK+++++ELGE  A  
Sbjct: 435 PKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQN 494

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L ++EP+N GSYVLLSNIYATA RW  V  +R+ + ++G++K PGCSS+
Sbjct: 495 LIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSI 543



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 44/412 (10%)

Query: 43  LIKKCKLQTHL---HQVHSHIIKKGLEQD----------------------------HSL 71
           L+K C     L    Q+H H++K G + D                            H  
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130

Query: 72  VAHFISLCHSLATP--LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
           V  + +L    A+   ++ +  +F+ I   +   WN ++ GY +   F E   ++  +++
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
               PD+ T   V+ AC+   S+  G  +H+ +   G   ++ +   LIDLY K  E+  
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVK 245
           A  +F  + +++V+SW  +I G+  +    EA  +F  M       ++V+  +++     
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 246 IGDLRSARQLFDEMPER-----NVVS-YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +G +   R +   + +R     N  S  T++ID YAK GD+ +A+ +F++   R + +W+
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN 370

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+I G+A +G+ + A  +FS M    + PD+   V L+SACS  G LDL   +   +S+ 
Sbjct: 371 AMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQD 430

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIH 410
           +    +      ++D+   CG    A E+  TMP   D V +CS++K   +H
Sbjct: 431 YKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH 482


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/545 (38%), Positives = 327/545 (60%), Gaps = 23/545 (4%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +LI     +THL+Q+++ ++  GL+    L+A  ++   ++   +S +  +F++  +P+ 
Sbjct: 80  SLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGE-VSCARKLFDKFPDPDV 138

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           FLWN +++ YS++  F     ++ R+      PD ++FP V+KACS + ++  G  +H  
Sbjct: 139 FLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQ 198

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           + R G + DVFV   L+ LY K  EI  A  VF  + +R +VSWT++I GYA  G  +EA
Sbjct: 199 IFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEA 258

Query: 222 KTVFDLMPERSNV--SWNALIGGL---VKIGDLRSARQLFD-------EMPERNVVSYTT 269
             +F  M  ++NV   W AL+  L     + DL   + +         E     ++S T+
Sbjct: 259 LRIFSEM-RKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTS 317

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +   YAK G +  AR  F    +  ++ W+A+ISGY +NG  +EA+++F  M SKN++PD
Sbjct: 318 L---YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPD 374

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAE 387
              + S ++AC+Q+G+L+L+ W+D Y+S S     R  VI   +L+D  AKCG++D A  
Sbjct: 375 SITVTSSIAACAQIGSLELARWMDEYISMSEF---RNDVIVNTSLIDTYAKCGSVDMARF 431

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ +P++DVV + +M+ G  +HG GR+++ LF  M   G++P++V F  +LTAC + GL
Sbjct: 432 VFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGL 491

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           VE+GW  F  M++ Y I P  +HYAC+VDLLGR GHL  AY  + +MP+EP  S WGALL
Sbjct: 492 VEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALL 550

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            ACK++  + LGE  A RLF L+P N G YV LSN+YA++  W  V  VR  M+E+GL K
Sbjct: 551 SACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTK 610

Query: 568 IPGCS 572
             G S
Sbjct: 611 HLGYS 615



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 129/283 (45%), Gaps = 12/283 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S L      +   H   +H  +IK GLE +  L+    SL ++    +  +  
Sbjct: 272 PDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSL-YAKCGHVMVARL 330

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
            FN++ NP+   WN ++ GY +N    E   +F RL++ + + PD  T    I AC+ + 
Sbjct: 331 FFNQVENPSLIFWNAMISGYVKNGYAEEAIELF-RLMKSKNIRPDSITVTSSIAACAQIG 389

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           S+     +   +       DV V TSLID Y K   +  AR VFD +P+++VV W+AM+V
Sbjct: 390 SLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMV 449

Query: 211 GYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-- 264
           GY   G   E+  +F  M +     ++V++  L+      G +     LF  M +  +  
Sbjct: 450 GYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEP 509

Query: 265 --VSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG 304
               Y  ++D   + G +  A +     P +  V  W AL+S 
Sbjct: 510 RHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSA 552


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/535 (37%), Positives = 311/535 (58%), Gaps = 35/535 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+L+  CK  T   Q+H++++K GLE D  +    +  C  SL+  L Y+  +F    NP
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNP 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAI 158
           + F+ NTL++G  ++ R  +    F+ + R   + PD ++F  ++KA +++ SVR G  +
Sbjct: 69  DVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQL 128

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   +  G+D  +FVGT+LI +YG+     C                    VG+A     
Sbjct: 129 HCQALVHGLDTHLFVGTTLISMYGE-----CG------------------FVGFA----- 160

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
              + VFD MPE + ++WNA++    + GD++  R+LFD MP RN++S+  M+ GY K G
Sbjct: 161 ---RKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAG 217

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++  AR +F   P +D V+WS +I G+A NG  +EA   F ++  K ++P+E  L  ++S
Sbjct: 218 ELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLS 277

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDV 397
           AC+Q G L+    +  ++ +S +      V  AL+D  +KCGN+  A  +FE + N R++
Sbjct: 278 ACAQAGALEFGKILHGFIEKSGLAWI-VSVNNALLDTYSKCGNVLMAQLVFERIMNERNI 336

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ SM+  L++HGHG +A+ +F +M   G+ PDE+AF  +L ACSH GLVE G  +F+ 
Sbjct: 337 VSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDK 396

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+ +Y I PS EHY CMVDL GR G L+ AYE +  MP+   A  W  LLGAC ++ D++
Sbjct: 397 MKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVK 456

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L E V  RL EL+P N+  +VLLSN YA A +W D   VR  M E+ + K PG S
Sbjct: 457 LAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWS 511


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/447 (42%), Positives = 285/447 (63%), Gaps = 1/447 (0%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           ++R+   P+ YTFPL++K C  + S+ +G  IHA ++++G + D+FV  SLI +Y     
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           I  AR +F+     ++V+W +MI GY   G++  A+ +F+ MPER   SWN++I G V  
Sbjct: 61  IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +A  LF++MP R++VS+  MIDGYA+V +M  A  LF   P R+VV+W+ +++ Y 
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           +    DE +++F  M  + + P+E  LVS+++AC+ +G LD   W+ SY+  + +     
Sbjct: 181 RIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 239

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  AL+ M AKCG MD A ++F+ M NR VVS+ SMI G  +HG   +A+ +F  M   
Sbjct: 240 LLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKR 299

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G  P++  F  VL+AC+H G++ +GW +F+ M+  Y I P  EHY CMVDLLGR G +K 
Sbjct: 300 GPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKD 359

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
             EL+  MP+E   + WGALL AC+ +S+ EL E+VA RL ELEP++ G Y+LLSNIYA 
Sbjct: 360 LEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAA 419

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCSS 573
             +W DV +VR  MKERGL K  G SS
Sbjct: 420 EGKWDDVEIVRKMMKERGLTKTTGLSS 446



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 159/379 (41%), Gaps = 79/379 (20%)

Query: 54  HQVHSHIIKKGLEQD----HSLVAHFISLCH------------SLATPLSYSTAV----- 92
            ++H+ I+K G E D    +SL+ H  S+C             S++  +++++ +     
Sbjct: 30  EKIHARILKFGFELDLFVRNSLI-HMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVK 88

Query: 93  ----------FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
                     F  +   + F WN+++ GY  N        +F          +K  F   
Sbjct: 89  NGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLF----------NKMPF--- 135

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                                      D+     +ID Y + + +  A ++F+ MP RNV
Sbjct: 136 --------------------------RDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNV 169

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK---IGDLRSARQLF--- 256
           VSW  M+  Y  + D  E   +FD M   +  +   L+  L     +G L   + +    
Sbjct: 170 VSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYI 229

Query: 257 --DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
             + + E +V+  T ++  YAK G M  AR +F+   +R VV+W+++I GY  +GQ D+A
Sbjct: 230 KNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKA 289

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           +++F DM  +   P++   + ++SAC+  G +    W    + R++    +      +VD
Sbjct: 290 LEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVD 349

Query: 375 MNAKCGNMDRAAELFETMP 393
           +  + G M    EL   MP
Sbjct: 350 LLGRAGLMKDLEELIRKMP 368



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 81/181 (44%), Gaps = 2/181 (1%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
            P  + L+S LT             +HS+I    + +   L++  +   ++    +  + 
Sbjct: 200 MPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLAR 259

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            VF+++ N +   WN+++ GY  + +  +   +F+ + +   +P+  TF  V+ AC+H  
Sbjct: 260 DVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSG 319

Query: 151 SVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM 208
            + EG      + R + ++  V     ++DL G+   +    ++  +MP E     W A+
Sbjct: 320 MILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGAL 379

Query: 209 I 209
           +
Sbjct: 380 L 380


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 319/539 (59%), Gaps = 36/539 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH--SLATPLSYSTAVFNRIVN 98
           ++++ KCK    L Q+H+ +IK  L      V+  I+ C    ++  L Y+++VF+RI +
Sbjct: 10  VSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQH 69

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR--EEAVPDKYTFPLVIKACSHVLSVREGT 156
           PN+F++  L+KG+S  S  +E   ++ R++     +   +++ P V+KAC  +L+  EG 
Sbjct: 70  PNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGR 129

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H  V++  +  D FVG S++ +Y    EI  AR+V                       
Sbjct: 130 QVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRV----------------------- 166

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                   FD MP R  VSWN++I G +K G++  A +LFDEMPER++VS   MIDGY K
Sbjct: 167 --------FDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK 218

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G    A  +FE   D+DVV W+++IS Y QN  P +A+ +F +M S  ++PD   +VS+
Sbjct: 219 CGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSV 278

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR- 395
           +SA + +G ++   W+ +Y+S + ++LS   + +AL+DM +KCG ++ A  +F ++ +R 
Sbjct: 279 LSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRR 338

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           ++  + SMI GL+IHG  R+A+ +F  M    + P+E+ F  +L+ CSH GLVE+G  +F
Sbjct: 339 NIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYF 398

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           E+M   Y IVP  +HY CM+DL GR G L+ A  ++ +MP E    AW A+L A   +  
Sbjct: 399 ESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGH 458

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           IE+G+  A R  EL P ++ SYVLLSNIYA A RW DV  +R  M++RG++KI GCSS+
Sbjct: 459 IEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSM 517



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 9/210 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    ++S L+ I           +H+++    +E     +   +   +S    +  +  
Sbjct: 270 PDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYH 329

Query: 92  VFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           VF  I +  N   WN+++ G + +    E   IFV + R +  P++ TF  ++  CSH  
Sbjct: 330 VFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGG 389

Query: 151 SVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM 208
            V EG     ++  ++ +   +     +IDL+G+   +  A  V   MP E ++++W A+
Sbjct: 390 LVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAI 449

Query: 209 IV-----GYASVGDLVEAKTVFDLMPERSN 233
           +      G+  +G     + + +L P+ S+
Sbjct: 450 LSASMKHGHIEIGKSAALRAI-ELAPDDSS 478


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 305/539 (56%), Gaps = 10/539 (1%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TLI       HL Q+H  +I   L  D  LV   +           YS  +F+    PN 
Sbjct: 18  TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRT-LFFRQTKYSYLLFSHTQFPNI 76

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           FL+N+L+ G+  N  F E   +F+ + +       +TFPLV+KAC+   S + G  +H+ 
Sbjct: 77  FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSL 136

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           V++ G + DV   TSL+ +Y     ++ A K+FDE+P+R+VV+WTA+  GY + G   EA
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196

Query: 222 KTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDG 273
             +F  M E      +     ++   V +GDL S   +   M E    +N    TT+++ 
Sbjct: 197 IDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNL 256

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK G M  ARS+F++  ++D+V WS +I GYA N  P E +++F  M  +N++PD+F +
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSI 316

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           V  +S+C+ +G LDL  W  S + R H  L+   +  AL+DM AKCG M R  E+F+ M 
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +D+V   + I GL+ +GH + + ++F +    G++PD   F  +L  C H GL++DG R
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           FF A+  VYA+  + EHY CMVDL GR G L  AY L+  MP+ P+A  WGALL  C+L 
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            D +L E V   L  LEP NAG+YV LSNIY+   RW +   VR  M ++G++KIPG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYS 554


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 334/600 (55%), Gaps = 50/600 (8%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-S 77
           ML + + + P N   P+     L L+ K K    ++Q+HS +I  G   + SL    I +
Sbjct: 1   MLISATSNQPWNSTHPT-----LILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILN 55

Query: 78  LCHSLATPLS------YSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
              S   PL       + +  F R      N FLWN ++K +S      E F IF  ++ 
Sbjct: 56  FSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLE 115

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT-------------- 175
                DK++F LV+KACS +  ++EG  IH  + R  +  DVF+                
Sbjct: 116 NGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGI 175

Query: 176 -----------------SLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYA-SV 215
                            S+ID Y K   +  AR++FD MP  ++N++SW +MI GYA S 
Sbjct: 176 ARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSE 235

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
             L  A  +F+ MP+R  +SWN++I G VK G + +A  LF++MP+R+VVS+  M+DGYA
Sbjct: 236 EGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYA 295

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILV 334
           K+G++  AR LF+  P+RDV++ +A+++GY QNG   EA+  F DM S K + PD   L+
Sbjct: 296 KLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLL 355

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
             +SA +Q+G+ D    +  Y+  +   LS   +  AL+DM AKCG++D A  +FE + +
Sbjct: 356 ITLSAIAQLGHFDEGVALHCYIEDNGFSLSEK-LGVALIDMYAKCGSIDNALSVFEDIDD 414

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           + +  + ++I GL+IHG G  A  LF  M    + PD++ F  VL AC+H GLV++G   
Sbjct: 415 KSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMC 474

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           FE M+ V+ + P  +HY CMVD+LGR GH++ A + +  MP+EP+   W  LL AC+ + 
Sbjct: 475 FELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHE 534

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +  +GE VA  L  ++  N  SYVLLSNIYA    W DV  +R  MK+R L+KIPGCS +
Sbjct: 535 NFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQI 594


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 322/561 (57%), Gaps = 40/561 (7%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           THL QVH+ I++  L++  SL+   +    +L++ L Y+ +VFN I  P T L N  L+ 
Sbjct: 37  THLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRE 96

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            S++    +   ++ R+  +    D+++FP ++KA S V S+ EG  IH    + G D D
Sbjct: 97  LSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSD 156

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            FV T L+ +Y     I+ AR +FD+M  R+VV+W+ MI GY   G   +A  +F+ M  
Sbjct: 157 PFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKN 216

Query: 231 RS-------------------NVSWNALIGGLV--------------------KIGDLRS 251
            +                   N+S+  +I   +                      G +  
Sbjct: 217 YNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDL 276

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           A  LF++M  +N+V+ T M+ GY+K+G + +ARS+F     +D+V WSA+ISGYA++  P
Sbjct: 277 ALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSP 336

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
            EA+ +F++M S  ++PD+  ++S+++AC+ +G LD + W+  ++ ++    +   +  A
Sbjct: 337 QEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALP-INNA 395

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L++M AKCG+++RA  +F+ MP ++V+S+  MI   ++HG    A+  F +M  E + P+
Sbjct: 396 LIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + F  VL ACSH GLVE+G + F +M N + I P   HY CMVDL GR   L+ A EL+
Sbjct: 456 GITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELV 515

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MP+ P+   WG+L+ AC+++ +IELGE  A RL EL+P + G++V LSNIYA A RW 
Sbjct: 516 EAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWE 575

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           DV  VR  MK +G+ K  GCS
Sbjct: 576 DVGQVRKLMKHKGISKERGCS 596


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/518 (36%), Positives = 315/518 (60%), Gaps = 34/518 (6%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +++ ++K    QD  L+  FIS   +    + Y+   + ++  PN F++N ++KG+ Q+ 
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTF-NRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSY 59

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           + ++   ++V+++R    P  YTFP +IKAC  V  +R   A+H  V R G D  VFV T
Sbjct: 60  QPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQT 119

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           SL+D Y                               +S+G + E+  VFD MPER   +
Sbjct: 120 SLVDFY-------------------------------SSMGRIEESVRVFDEMPERDVFA 148

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           W  ++ GLV++GD+ SA +LFD MP+RN+ ++ T+IDGYA++ ++  A  LF   P RD+
Sbjct: 149 WTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDI 208

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           ++W+ +I+ Y+QN +  EA+ +F++M    + PDE  + +++SAC+ +G LDL   +  Y
Sbjct: 209 ISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYY 268

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + +   +L   ++ +AL+DM AKCG++DR+  +F  +  +++  + S+I+GL++HG+  +
Sbjct: 269 IMQHGFNLD-VYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEE 327

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+++FD+M  E + P+ V F  VL+AC+H GL+E+G + F +M   ++I P  EHY CMV
Sbjct: 328 ALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMV 387

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLL + G L+ A +L+ +M +EP+A  WGALL  CKL+ ++E+ ++ AN+L  LEP N+G
Sbjct: 388 DLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSG 447

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRK-IPGCS 572
            Y LL N+ A  +RW +   +R  MKE+G+ K  PG S
Sbjct: 448 YYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSS 485


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 338/585 (57%), Gaps = 53/585 (9%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--- 97
           L+L++ C     L Q+H+ +   GL       +  ++ C +L+TP   + A         
Sbjct: 39  LSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFC-ALSTPPRLAHAAAILARASP 97

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA------CSHVLS 151
            PN ++  T+++G+ +         +F R++R+    D  TF   +KA        H  +
Sbjct: 98  GPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGT 157

Query: 152 VREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
              G AIH A ++ G V E V VG +L+  Y   K +  A KVFDEMPER+VVSWT ++ 
Sbjct: 158 PSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVD 217

Query: 211 GYASVGDLVEAKTVF-------DLMPE--------------------------------- 230
           GYA  G   EA  +F        + P                                  
Sbjct: 218 GYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVA 277

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           RS    NAL+    K G +R AR++FD M  ++V S+T+M++ YAK GD+ SA  LF+  
Sbjct: 278 RSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDM 337

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P R+VV+WS +I+ Y+Q  QP+EAV +F +M +  V P +  LVS++SAC+Q+G LDL  
Sbjct: 338 PRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGR 397

Query: 351 WV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
           W+ ++Y+  + + L+  ++  AL+DM AKCG++  A++LF+ M  R+VVS+ +MI   ++
Sbjct: 398 WIYENYIVSNKIGLT-VNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG   +A+ LF+++  E + PD++ F  +L +CSH GLV +G R+F+ M+  Y I P  E
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYACM+DLLG+ G L+ A+E+   MP+E   + WGALL AC+++ ++E+G  VA++L EL
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVEL 576

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +P ++G YVL+S IYA+ ++W  V ++R  M++RG++K PGCSS+
Sbjct: 577 DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSI 621


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/578 (34%), Positives = 326/578 (56%), Gaps = 45/578 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP-----LSYSTAVFNR 95
           L L+++C+   HL Q+H+H++  G     S+ +  I+   +L+       L ++  +F+R
Sbjct: 14  LELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDR 73

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  P+ F++NTL++ YS +    E   +   +++   +P+++T P V+KAC+ V +V   
Sbjct: 74  IPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHA 133

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
            A H  V++ G  + +FV  +L+  +     +  +R+ F EM +RNVVSW  MI GYA  
Sbjct: 134 LAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQA 193

Query: 216 GDLVEAKTVFDLMPERS---------------------------------------NVSW 236
           G++ EA  +F  M  +                                         +  
Sbjct: 194 GEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILG 253

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NAL+    K GDL  A + FD MP +NVV++T+M+   AK G + + R  FE  P+R++V
Sbjct: 254 NALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIV 313

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+A+IS Y Q G+  E + +++ M S  + PDEF L  ++SAC Q G+L     +  Y+
Sbjct: 314 SWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYV 373

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            R + +     ++ +L+DM A+CG +D A  LF  MPN++V+S+  +I  L++HG  ++ 
Sbjct: 374 -RDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQET 432

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           V+ F  M+S+  +PDE+ F  +L+ACSH GL+E G  +FEAM  VY + P  EHY CMVD
Sbjct: 433 VTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVD 492

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           LLGR GHL  A  L+  M ++P    WGALLGAC+++ ++E+G+LV  +L ELE    G 
Sbjct: 493 LLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGL 552

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +VL+ N++   ++W D+  +R  MKE+G +K  G SS+
Sbjct: 553 FVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSI 590



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 203/443 (45%), Gaps = 46/443 (10%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P  F  P  +L A T ++  +   H    H  ++K G  Q    VA+ +   H+ A  L 
Sbjct: 112 PNEFTLPF-VLKACTTVRAVE---HALAAHGVVVKLGFVQ-QIFVANALLHFHASAGSLR 166

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
            S   F  + + N   WNT++ GY+Q     E   +F  +  +  + D +T   ++ ACS
Sbjct: 167 DSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACS 226

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
              ++  G  +H  ++  G   D  +G +L+D+YGK  ++  A + FD MP +NVV+WT+
Sbjct: 227 SEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTS 286

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE 261
           M+   A  G +   +  F+ MPER+ VSWNA+I   V+ G L     L++ M      P+
Sbjct: 287 MLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPD 346

Query: 262 R---------------------------------NVVSYTTMIDGYAKVGDMTSARSLFE 288
                                              V    +++D YA+ G + +A  LF 
Sbjct: 347 EFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFT 406

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
             P+++V++W+ +I   A +G+  E V  F  M S    PDE   V L+SACS  G L+ 
Sbjct: 407 EMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEA 466

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGL 407
             +    ++R +           +VD+  + G++ +A  L + M  + DVV + +++   
Sbjct: 467 GEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGAC 526

Query: 408 SIHGHGRQAVSLFDRMLS-EGLT 429
            IHG+      +  ++L  EG+T
Sbjct: 527 RIHGNVEIGKLVIKQLLELEGIT 549


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 309/527 (58%), Gaps = 41/527 (7%)

Query: 52  HLHQVHSHIIKKGLEQDH----SLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           HL Q H+ I++ G  QD     SLV  + ++  +       S  VF+ +  PN FLWN +
Sbjct: 50  HLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCM 109

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +K   +N+   +   ++  ++   + P+KYT+P V+KACS    V EG  +HA +++ G+
Sbjct: 110 IKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGL 169

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD- 226
             D  + +S I +Y                               AS G LVEA+ + D 
Sbjct: 170 GGDGHILSSAIRMY-------------------------------ASFGRLVEARRILDD 198

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-YTTMIDGYAKVGDMTSARS 285
              E   V WNA+I G ++ G++ +AR+LF+ MP+R+++S +  MI G+++ G +  AR 
Sbjct: 199 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 258

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            F+   +RD ++WSA+I GY Q G   EA++IF  M  + ++P +F+L S++SAC+ +G 
Sbjct: 259 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGA 318

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           LD   W+ +Y  R+ + L    +  +LVDM AKCG +D A E+FE M N++V S+ +MI 
Sbjct: 319 LDQGRWIHTYAKRNSIQLDGV-LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIG 377

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL++HG    A+ LF +M    + P+E+ F  VL AC+H GLV+ G   F +M+  Y + 
Sbjct: 378 GLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 434

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY C+VDLLGR G L  A ++++S+P EP  + WGALLGAC+ + ++ELGE V   
Sbjct: 435 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 494

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L ELEPQN+G Y LLSNIYA A RW +V  VR  MKERG++  PG S
Sbjct: 495 LLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTS 541


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/553 (39%), Positives = 311/553 (56%), Gaps = 15/553 (2%)

Query: 33  KPSC----LLSALTLIKKCKLQTHLHQVHSHIIKKG--LEQDHSLVAHFISLCHSLATPL 86
           +P C    L + L+ ++ C+  +H  Q H+ ++  G        L    +    S+    
Sbjct: 2   RPPCPAVALPTLLSRLRACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAA 61

Query: 87  SYSTAVFNRIVNP---NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
             + AVF R+  P   + F WNT ++ ++   R       F R+      PD YTFP V+
Sbjct: 62  PLADAVFARLPEPAARDPFPWNTAIRLHAPG-RPRAALLYFARMRSCGVRPDAYTFPAVL 120

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--ERN 201
           KAC      R G  +HA  +R G+  D+F   +LI  Y +  +    RKVFDE     R+
Sbjct: 121 KACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRD 180

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD--LRSARQLFDEM 259
           +VSW +M+ GY   G++  A+ +FD MP+R   SW ALI G  K G   +  AR+LFD+M
Sbjct: 181 LVSWNSMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQM 240

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
            ER++V + +MIDGYA+ G M  ARSLFE  P+R+V++WS +I G+ + G+  EA++ F 
Sbjct: 241 TERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQ 300

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M    ++PD    V  +SAC+Q+G L+   W+ SYL +  + LS   V  AL+DM  KC
Sbjct: 301 SMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKV-LSDVVVQTALIDMYMKC 359

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G MD A  +FE+MP R VV++  MI GL  HG+G  AV LF RM +E +  D+++   +L
Sbjct: 360 GRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAML 419

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           TAC+H GLV +G   F  M+  + I P  EHY  +VDLLGR G L  A   + +MP+EP 
Sbjct: 420 TACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPT 479

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
              WG+LL AC+ +S +EL EL   RL  L   ++G YVLLSNIYA    W DV  +R  
Sbjct: 480 PELWGSLLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKL 539

Query: 560 MKERGLRKIPGCS 572
           M + G+RK  G S
Sbjct: 540 MSDEGMRKDIGRS 552


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/529 (35%), Positives = 310/529 (58%), Gaps = 40/529 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L Y+ +VF  I  PN  +WNT+ +G++ +   +    ++V +I    +P+ YTFP ++K+
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + + +EG  IH  V++ G + D++V TSLI +Y + + +  A KVFD    R+VVS+
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           TA++ GYAS G +  A+ +FD +P +  VSWNA+I G V+ G+ + A +LF EM + NV 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 266 S---------------------------------------YTTMIDGYAKVGDMTSARSL 286
                                                      +ID Y+K G+M +A  L
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F     +DV++W+ LI GY       EA+ +F +M      P++  ++S++ AC+ +G +
Sbjct: 253 FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAI 312

Query: 347 DLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           D+  W+  Y+ +    ++ A  +  +L+DM +KCG+++ A ++F +M ++ + ++ +MI 
Sbjct: 313 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIF 372

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G ++HG    A  +F RM    + PD++ F  +L+ACSH G+++ G   F +M + Y I 
Sbjct: 373 GFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKIT 432

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY CM+DLLG +G  K A E++++M +EP    W +LL ACK++ ++ELGE  A  
Sbjct: 433 PKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQN 492

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LF++EP N GSYVLLSNIYATA RW +V  +R  + ++G++K+PGCSS+
Sbjct: 493 LFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSI 541



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 182/399 (45%), Gaps = 41/399 (10%)

Query: 55  QVHSHIIKKGLEQD----------------------------HSLVAHFISLCHSLATPL 86
           Q+H H++K G E D                            H  V  + +L    A+  
Sbjct: 84  QIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRG 143

Query: 87  SYSTA--VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
              +A  +F+ I   +   WN ++ GY +   + E   +F  +++    PD+ T   VI 
Sbjct: 144 YIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVIS 203

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A +   S+  G  +H+ +   G   ++ +  +LID Y K  E+  A  +F  +  ++V+S
Sbjct: 204 ASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVIS 263

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           W  +I GY  +    EA  +F  M       ++V+  +++     +G +   R +   + 
Sbjct: 264 WNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYID 323

Query: 261 ER-----NVVSY-TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           +R     N  S  T++ID Y+K GD+ +A  +F +   + + AW+A+I G+A +G+ + A
Sbjct: 324 KRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAA 383

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
             IFS M    ++PD+   V L+SACS  G LDL   +   ++ ++    +      ++D
Sbjct: 384 FDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMID 443

Query: 375 MNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
           +    G    A E+  TM    D V +CS++K   +HG+
Sbjct: 444 LLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGN 482


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 308/527 (58%), Gaps = 41/527 (7%)

Query: 52  HLHQVHSHIIKKGLEQDH----SLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           HL Q H+ I++ G  QD     SLV  + ++  +       S  VF+ +  PN FLWN +
Sbjct: 49  HLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCM 108

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +K   +N+   +   ++  ++     P+KYT+P V+KACS    V EG  +HA +++ G+
Sbjct: 109 IKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 168

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD- 226
             D  + +S I +Y                               AS G LVEA+ + D 
Sbjct: 169 GGDGHILSSAIRMY-------------------------------ASFGRLVEARRILDD 197

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-YTTMIDGYAKVGDMTSARS 285
              E   V WNA+I G ++ G++ +AR+LF+ MP+R+++S +  MI G+++ G +  AR 
Sbjct: 198 KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE 257

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            F+   +RD ++WSA+I GY Q G   EA++IF  M  + ++P +F+L S++SAC+ +G 
Sbjct: 258 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGA 317

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           LD   W+ +Y  R+ + L    +  +LVDM AKCG +D A E+FE M N++V S+ +MI 
Sbjct: 318 LDQGRWIHTYAKRNSIQLDGV-LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIG 376

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL++HG    A+ LF +M    + P+E+ F  VL AC+H GLV+ G   F +M+  Y + 
Sbjct: 377 GLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 433

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY C+VDLLGR G L  A ++++S+P EP  + WGALLGAC+ + ++ELGE V   
Sbjct: 434 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 493

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L ELEPQN+G Y LLSNIYA A RW +V  VR  MKERG++  PG S
Sbjct: 494 LLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTS 540


>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 558

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 325/543 (59%), Gaps = 20/543 (3%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQD---HSLVAHFISLCHSLA--TPLSYSTAVFNRIV 97
            +   K  +HL Q+H+  +K  L Q+   H        + H  A  + L Y+  +F+ + 
Sbjct: 16  FLNNAKNISHLKQIHALFLKH-LPQNAPHHFFNRLLFRVLHFSAEKSNLYYAHKLFDTMP 74

Query: 98  N-PNTFLWNTLLKGY-SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           N  N F+W +L++ + S ++ F    + F R+ ++  +P  +TF LV+ AC  V +  EG
Sbjct: 75  NCSNCFIWTSLIRAFLSHHTHFCHCISTFARMHQKGILPSGFTFSLVLNACGRVPAGFEG 134

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             +HA +++ G   +  V T+L+D+Y K   +  AR VFD + +R+VV+WTAMI GYA  
Sbjct: 135 KQVHARLVQSGFLGNKIVQTALLDMYAKCGHVCDARDVFDGIVDRDVVAWTAMICGYAKA 194

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
           G +V+A+ +FD M ER++ +W  ++ G    GD+++A +L+D M  ++ V++  MI GY 
Sbjct: 195 GRMVDARFLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKDEVTWVAMIAGYG 254

Query: 276 KVGDMTSARSLFEAAPDRDVVAW-----SALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           K+G+++ AR +F    D   V W     +AL++ YAQNG   EA++++  M    ++  +
Sbjct: 255 KLGNVSEARRIF----DEITVPWNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTD 310

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELF 389
             +V  +SAC+Q+ ++ +SN +   +     +  + H+++ AL+ M +KCGN+D A   F
Sbjct: 311 VAMVGAISACAQLRDIRMSNSLTYNIEEGFCE--KTHIVSNALIHMQSKCGNIDLAWREF 368

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M NRD+ +Y +MI   + HG  + A+ LF +M  EGL P++V F  VL ACS  GL+E
Sbjct: 369 NIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVLNACSTSGLIE 428

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G RFF+ M  +Y I P PEHY CMVDLLGR G L+ AY L+        A+ WG+LL A
Sbjct: 429 EGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAA 488

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C++Y ++ELGE+ A  LFE++P ++G+YVLL+N YA+ D+W     V+  M ++G++K  
Sbjct: 489 CRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWECAEEVKKLMSKKGMKKPS 548

Query: 570 GCS 572
           G S
Sbjct: 549 GYS 551


>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 598

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/539 (37%), Positives = 324/539 (60%), Gaps = 12/539 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQD---HSLVAHFISLCHSLA--TPLSYSTAVFNRIV 97
            +   K  +HL Q+H+  +K  L Q+   H        + H  A  + L Y+  +F+ + 
Sbjct: 16  FLNNAKNISHLKQIHALFLKH-LPQNAPHHFFDRLLFRVLHFSAEKSNLYYAHKLFDTMP 74

Query: 98  N-PNTFLWNTLLKGY-SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           N  N F+W +L++ + S ++ F    + F  + ++  +P  +TF  V+ AC  V +V EG
Sbjct: 75  NCSNCFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGILPSGFTFSSVLNACGRVPAVFEG 134

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             +HA +++ G   +  V T+L+D+Y K   +  AR VFD M +R+VV+WTAMI GYA  
Sbjct: 135 KQVHARLVQSGFLGNKIVQTALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGYAKA 194

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
           G +V+A+ +FD M ER++ +W  ++ G    GD+++A +L+D M  +  V++  MI GY 
Sbjct: 195 GRMVDARLLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAMIAGYG 254

Query: 276 KVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           K+G+++ AR +F+  P   +    +AL++ YAQNG   EA++++  M    ++  +  +V
Sbjct: 255 KLGNVSEARRIFDEIPVPLNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTDVAMV 314

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMP 393
             +SAC+Q+ ++ +SN +   +     +  + H+++ AL+ M +KCGN+D A   F  M 
Sbjct: 315 GAISACAQLRDIRMSNLLTYDIEEGFCE--KTHIVSNALIHMQSKCGNIDLAWREFNIMR 372

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
           NRD+ +Y +MI   + HG  + A+ LF +M  EGLTP++V F  VL ACS  GL+E+G R
Sbjct: 373 NRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSGLIEEGCR 432

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           FF+ M  VY I P PEHY CMVDLLGR G L+ AY L+        A+ WG+LL AC++Y
Sbjct: 433 FFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACRVY 492

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++ELGE+ A  LFE++P ++G+YVLL+N YA+ D+W     V+  M ++G++K  G S
Sbjct: 493 GNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKKLMSKKGMKKPSGYS 551


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 310/532 (58%), Gaps = 34/532 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNT 101
           L + C     L Q+H+ +I KG   + S +   I     +++  ++Y+  +F  I  P+T
Sbjct: 19  LWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDT 78

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F+WNT+++G +Q+   +   +++ ++      PDK+TFP V+KAC+ +  V+ G  +H  
Sbjct: 79  FMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGR 138

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           V R G + + FV  +LI  +                               A+ GDL  A
Sbjct: 139 VFRLGFESNTFVRNTLIYFH-------------------------------ANCGDLAVA 167

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           + +FD   +R  V+W+AL  G  + G+L  ARQLFDEMP +++VS+  MI GYAK G+M 
Sbjct: 168 RALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEME 227

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SAR LF+  P RDVV W+A+I+GY   G   +A+++F +M S    PDE  ++SL+SAC+
Sbjct: 228 SARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 287

Query: 342 QVGNLDLSNWVDSYLSR-SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
            +G+LD    +   +S     DLS   +  AL+DM AKCG++ RA E+F+ M  +DV ++
Sbjct: 288 DLGDLDAGQRIHCCISEMGFRDLS-VLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTW 346

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            S++ GL+ HGH  +++ LF  M    + PDE+ F  VL ACSH G VE+G ++F+ M++
Sbjct: 347 NSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRD 406

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I P+  HY CMVDLLGR G L  A++ +++M +EP+A  W  LLGAC+++ ++ELG 
Sbjct: 407 EYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGR 466

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
               +L ++    +G YVLLSNIYA+   W  V  VR  M + G+RK  GCS
Sbjct: 467 RANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCS 518


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 320/551 (58%), Gaps = 53/551 (9%)

Query: 23  CSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           CS+S+P+    P      L+L + CK   HL Q+HS  IK G+  +  +    +S C S 
Sbjct: 6   CSQSSPVTENPP------LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSR 59

Query: 83  A-TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
               + Y+  +F+ I  P+ F WN + KGYS+ +      ++++ ++     PD YT+P 
Sbjct: 60  EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           + K  +  ++++ G  +H  V+++G+D +VF   +LI++Y     I  AR +FD   + +
Sbjct: 120 LFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD 179

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           VV+W AMI GY  +              ++  +SW A++ G V  G + +AR+ F +MPE
Sbjct: 180 VVTWNAMISGYNRI--------------KKDVISWTAIVTGFVNTGQVDAARKYFHKMPE 225

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           R+ VS+T MIDGY ++                                   EA+ +F +M
Sbjct: 226 RDHVSWTAMIDGYLRLNCY-------------------------------KEALMLFREM 254

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
            +  ++PDEF +VS+++AC+Q+G L+L  W+ +Y+ ++ +  +   V  AL+DM  KCGN
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVK-NDTFVGNALIDMYFKCGN 313

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           ++ A  +F T+P RD  ++ +M+ GL+I+G G +A+++F +ML   +TPDEV +  VL+A
Sbjct: 314 VEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSA 373

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+H G+V++G +FF +M   + I P+  HY CMVDLLG+ GHLK A+E++ +MP++P++ 
Sbjct: 374 CTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSI 433

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALLGAC+++ D E+ E    ++ ELEP N   YVL  NIYA  ++W  +  +R  M 
Sbjct: 434 VWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMM 493

Query: 562 ERGLRKIPGCS 572
           +RG++K PGCS
Sbjct: 494 DRGIKKTPGCS 504


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 317/574 (55%), Gaps = 28/574 (4%)

Query: 1   MPKIDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHI 60
           +P  + P         S   P  S SA    P        ++LI   K    LHQ+H+ I
Sbjct: 45  IPSPNPPEITTTISKTSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQI 104

Query: 61  IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120
           I   L     +    IS   SL   +++S AVFN     N F +N L++G + NS F   
Sbjct: 105 IIHNLSSSSLITTQLIS-SSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNA 163

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180
              F  ++R    PD+ T+P V+K+ + + S   G AIH  ++R G++ D FV  SL+D+
Sbjct: 164 IFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDM 223

Query: 181 YGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240
           Y K +++  A KVFDE PER                        FD     S + WN LI
Sbjct: 224 YVKVEKLGSAFKVFDESPER------------------------FD--SGSSALLWNVLI 257

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
            G  K G ++ A +LF  MP++  VS++T+IDG+AK GDM  A  LF+  P+++VV+W+ 
Sbjct: 258 KGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTT 317

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           ++ G+++NG  ++A+ +FS M  + V+P+ F +VS +SAC+++G L+    +  Y+  + 
Sbjct: 318 MVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNG 377

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           + L+ A +  ALVDM AKCGN++ A+E+F     + + ++  MI G +IHGH  QA++ F
Sbjct: 378 LHLTEA-LGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACF 436

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
            +M+  G+ PDEV F  +LTAC H G V+ G  FF++M+  Y I PS +HY  +VD+LGR
Sbjct: 437 KQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGR 496

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
           +G LK A   +  MP+ P    WGAL  AC+ +   ++ +   N+L +LEP + G+Y+ L
Sbjct: 497 SGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFL 556

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SN YA   +W D   VR  M+ RG+ K  G S +
Sbjct: 557 SNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCI 590


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 312/529 (58%), Gaps = 40/529 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L Y+T+VF  I  PN  +WNT+++G++ +S  +   T++V ++    +P+ YTFP ++K+
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   +  EG  IH  V++ G D D++V TSLI +Y +   +  A KVFD    R+VVS+
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
           TA+I GYAS GD+  A+ +FD +P +  VSWNA+I G  + G  + A +LF+EM + NV 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 265 ---VSYTT-----------------------------------MIDGYAKVGDMTSARSL 286
               +Y T                                   +ID Y+K G++ +A  L
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+    +DV++W+ LI GY       EA+ +F +M      P++  ++S++ AC+ +G +
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 347 DLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           D+  W+  Y+ +    ++ A  +  +L+DM AKCG+++ A ++F +M ++ + S+ +MI 
Sbjct: 314 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 373

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G ++HG    +  LF RM   G+ PD++ F  +L+ACSH G+++ G   F +M   Y + 
Sbjct: 374 GFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 433

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY CM+DLLG +G  K A E++N+M +EP    W +LL ACK++ ++EL E  A  
Sbjct: 434 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQN 493

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L ++EP+N  SY+LLSNIYA+A RW DV  +R+ +  + ++K+PGCSS+
Sbjct: 494 LIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSI 542


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/583 (37%), Positives = 333/583 (57%), Gaps = 53/583 (9%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVN 98
           L L++ C       Q+H+ +   GL       +  ++ C +L+TP  + ++ A+  R   
Sbjct: 41  LALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFC-ALSTPPRVDHAAAILARASA 99

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS-----HVLSVR 153
           PN ++  T+++ + +         +F R+IRE    D  T    IKA +     H  S  
Sbjct: 100 PNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGG 159

Query: 154 EGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           EG  +H   ++WG V + V VG +L+  Y   + ++ AR +FDEMP+R+VVSWT ++ GY
Sbjct: 160 EG--VHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGY 217

Query: 213 ASVGDLVEAKTVF-------DLMPE---------------------------------RS 232
           A  G   EA  VF        L P                                  RS
Sbjct: 218 ARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRS 277

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
               NALI    K G   SAR++FD M  ++V S+TTM++ YAK GD+ SA  LF+  P 
Sbjct: 278 VNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPR 337

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           R+ V+WS +I+ Y+Q  QP+EAV++F  M  + V+P    LVS++SAC+Q+G LDL  W+
Sbjct: 338 RNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWI 397

Query: 353 -DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
            D+Y+      L+  ++  A +D+ AKCG+ D A++LF  M  R+VVS+ SMI   ++HG
Sbjct: 398 YDNYVISGKAVLT-VNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHG 456

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
              + + LF+++    + PDE+ F  +L+ACSH GLV +G R+F+ M+ +Y I P  EHY
Sbjct: 457 QSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHY 516

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
           ACM+DLLG+ G L+ A+E+   MP+E   + WGALL AC++Y ++E+GE  A++L +L P
Sbjct: 517 ACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNP 576

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            ++G YVL+S IYA+ ++W  V ++R  M+ERG++K PGCSS+
Sbjct: 577 LDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSI 619


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/527 (39%), Positives = 313/527 (59%), Gaps = 11/527 (2%)

Query: 52  HLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           H+ ++H+ ++++GL +D      L+A +  L    A    +S A           L NTL
Sbjct: 119 HVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLANTL 178

Query: 108 LKGYSQNSRFIEVFTIFVRL-IREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           L+ Y+ NS       +FV + +R+    D +T+  +IKA +    V    A H  V + G
Sbjct: 179 LRAYALNSLPHAALAVFVDMPLRQR---DTFTYSFLIKALA-TAGVTPVRAAHTHVFKLG 234

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
             ED FVG +LID Y K   +S A+KVFDEM  R+VVSW   +      G++  A+++FD
Sbjct: 235 SVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFD 294

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            MPE+  VSWN ++ G  K G+   A +LF  MP RNVVS++T++  Y K GDM  AR +
Sbjct: 295 EMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVI 354

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+  P +++V W+ ++S  AQ G   EA ++F++M    ++ D   +VS+++AC++ G L
Sbjct: 355 FDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCL 414

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET-MPNRDVVSYCSMIK 405
            L   +  ++ +  +  S   V  AL+DM  KCG ++RA  +F+T +  +D VS+  +I 
Sbjct: 415 ALGKRIHRHVRQRKLGRSTL-VCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIG 473

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G ++HGHG +A++LF +M  +G  PD V    VL+AC+H+GLVE+G RFF  M+  Y I 
Sbjct: 474 GFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIK 533

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY CMVDLLGR G +K A +++ SMP EP+   WG+LL AC+L+ ++E  EL AN 
Sbjct: 534 PEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAANE 593

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L  L+P NAG+Y +LSNIYA A +W D+   R +MK  G +K  G S
Sbjct: 594 LSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSS 640


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 314/542 (57%), Gaps = 8/542 (1%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI- 96
           L  L  I +CK    L Q+H+H+I  GL  D  +++            + Y+    N+  
Sbjct: 6   LRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTD 65

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           ++  T  +NTL+  Y+ +      F ++ R++    VPD YTFP+V+KAC+  L V+EG 
Sbjct: 66  LHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGE 125

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H   ++ G   D++V  SL+  Y    +   A +VFDEM  R+VVSWT +I GY   G
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTG 185

Query: 217 DLVEAKTVFDLMPERSNV-SWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMI 271
              EA  +F  M    NV ++ +++    ++G L   + +   + +R     +V    ++
Sbjct: 186 LFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALV 245

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K   +  AR LF+  PDRD+V+W+++ISG  Q  QP +++++F DM    V+PD  
Sbjct: 246 DMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRI 305

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
           IL S++SAC+ +G LD   WV  Y+ R  ++    H+  ALVDM AKCG ++ A  +F  
Sbjct: 306 ILTSVLSACASLGALDYGRWVQEYIERQGIEWD-IHIGTALVDMYAKCGCIEMALHIFNG 364

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +PNR++ ++ +++ GL++HGHG +A+  F+ M+  G+ P+EV F  +LTAC H GLV +G
Sbjct: 365 IPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEG 424

Query: 452 WRFFEAM-QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
             +F  M    +   P  EHY CM+DLL R G L  AY+ + +MP+ P    WGALL AC
Sbjct: 425 RSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSAC 484

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           K   ++EL + + + L EL+ Q++G YVLLSNIYAT +RW DV  VR  MK++G+RK PG
Sbjct: 485 KANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPG 544

Query: 571 CS 572
            S
Sbjct: 545 SS 546


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/435 (42%), Positives = 285/435 (65%), Gaps = 1/435 (0%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+P VIKAC+       G  +H  V++ G + D ++  SLI LY   K++  A+++F   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            +R+VVSW AMI GY   G++   + VFD M  R  +SWN +I G   +G +  A++LFD
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
           EMPERN+VS+ +M+ G+ K G++  A  LF   P RDVV+W+++++ YAQ G+P+EA+ +
Sbjct: 122 EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 181

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M +  V+P E  +VSL+SAC+ +G LD    + +Y++ + ++++   V  ALVDM A
Sbjct: 182 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYA 240

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG +  A ++F  M ++DV+++ ++I G++IHGH ++A  LF  M    + P+++ F  
Sbjct: 241 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVA 300

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           +L+ACSH G+V++G +  + M + Y I P  EHY C++DLL R G L+ A EL+ +MP+E
Sbjct: 301 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           P+ SA GALLG C+++ + ELGE+V  RL  L+P ++G Y+LLSNIYA A +W D   VR
Sbjct: 361 PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVR 420

Query: 558 SKMKERGLRKIPGCS 572
           + MK  G+ K+PG S
Sbjct: 421 NLMKVNGISKVPGVS 435



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 179/397 (45%), Gaps = 80/397 (20%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+H++K G E D  +V   I L ++    L  +  +F+   + +   WN ++ GY +  
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHL-YANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRG 80

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
                  +F R++                 C  V+S             W          
Sbjct: 81  EMGHTRMVFDRMV-----------------CRDVIS-------------W---------N 101

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           ++I+ Y    +I  A+++FDEMPERN+VSW +M+ G+   G++ EA  +F  MP R  VS
Sbjct: 102 TIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVS 161

Query: 236 WNALIGGLVKIGDLRSARQLFDEMP----------------------------------- 260
           WN+++    + G    A  LFD+M                                    
Sbjct: 162 WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN 221

Query: 261 ----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
               E N +  T ++D YAK G ++ A  +F A   +DV+AW+ +I+G A +G   EA +
Sbjct: 222 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQ 281

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F +M   +V+P++   V+++SACS  G +D    +   +S S+    +      ++D+ 
Sbjct: 282 LFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLL 341

Query: 377 AKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
           A+ G ++ A EL  TMP   +  +  +++ G  IHG+
Sbjct: 342 ARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGN 378



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 28/290 (9%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            +F+ +   +   WN++L  Y+Q  +  E   +F ++      P + T   ++ AC+H+ 
Sbjct: 149 GLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLG 208

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++ +G  +H  +    ++ +  VGT+L+D+Y K  +IS A +VF+ M  ++V++W  +I 
Sbjct: 209 ALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIA 268

Query: 211 GYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP-----E 261
           G A  G + EA+ +F  M E S    ++++ A++      G +   ++L D M      E
Sbjct: 269 GMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIE 328

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSD 320
             V  Y  +ID  A+ G +  A  L    P + +  A  AL+ G   +G  +       +
Sbjct: 329 PKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFE-----LGE 383

Query: 321 MCSK---NVQP---DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           M  K   N+QP     +IL+S + A ++        W D+   R+ M ++
Sbjct: 384 MVGKRLINLQPCHSGRYILLSNIYAAAK-------KWDDARKVRNLMKVN 426



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 114/265 (43%), Gaps = 22/265 (8%)

Query: 39  SALTLIKKCK----LQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           + ++L+  C     L   LH +H++I    +E + S+V   +   ++    +S +T VFN
Sbjct: 196 TVVSLLSACAHLGALDKGLH-LHTYINDNRIEVN-SIVGTALVDMYAKCGKISLATQVFN 253

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            + + +   WNT++ G + +    E   +F  +      P+  TF  ++ ACSH   V E
Sbjct: 254 AMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDE 313

Query: 155 GTA-IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM---- 208
           G   +      +G++  V     +IDL  +   +  A ++   MP E N  +  A+    
Sbjct: 314 GQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGC 373

Query: 209 -IVGYASVGDLVEAKTVFDLMPERSN--VSWNALIGGLVKIGDLRSARQLF-----DEMP 260
            I G   +G++V  K + +L P  S   +  + +     K  D R  R L       ++P
Sbjct: 374 RIHGNFELGEMV-GKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVP 432

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARS 285
             +V+    M+  +   GD +   S
Sbjct: 433 GVSVIELKGMVHRFV-AGDWSHPES 456


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/527 (37%), Positives = 309/527 (58%), Gaps = 39/527 (7%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNPNTFLWNTL 107
           HL QVH+  ++ G  QDH +     +L    A P    L+++  VF  + NPN F++N +
Sbjct: 45  HLKQVHAVALRTGHFQDHYVSG---TLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNII 101

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +KG  QN+   +    + +++   A P+K+T+P + KAC+   +  EG  +HA VI+ G+
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGL 161

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             DV + ++ I +YG   E+  AR++  E    +V+ +                      
Sbjct: 162 SGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICF---------------------- 199

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
                    NA+I G +K G++ +A++LF  M ++NV S+  M+ G AK G +  AR LF
Sbjct: 200 ---------NAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELF 250

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
               +++ ++WSA+I GY + G   EA+++F+ M  + ++P +F+L S+++AC+ +G LD
Sbjct: 251 NEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALD 310

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
              W+ +Y++ +      A +  ALVDM AKCG +D A ++FE M  ++V ++ +MI GL
Sbjct: 311 QGRWIHAYVNNNSNSFD-AVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGL 369

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HG    A+ LF +M  +   P+ +    VL+AC+H G+V++G R F +M+ VY I P 
Sbjct: 370 GMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPG 429

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY C+VDLLGR G L  A E++ SMP+EP A+ WGALLGAC+ + D+ELGE V   L 
Sbjct: 430 MEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILL 489

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ELEPQN+G Y LLSNIYA A RW DV  VR  MKERG++   G S +
Sbjct: 490 ELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMI 536


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/554 (38%), Positives = 332/554 (59%), Gaps = 20/554 (3%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           S L+L++KCK    L ++H  +I   + QD   ++  +  C +S +  L+Y+ +VFN+I 
Sbjct: 7   SILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQID 66

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P+ ++WN+++KGYS +    E  T++  + ++   PD +TFP V+KACS V     G  
Sbjct: 67  RPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQC 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  +++ G + DV+  T+L+ +Y    ++  A KVFD++P+ NVV+WT++I G  S   
Sbjct: 127 VHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 218 LVEAKTVFDLMPERSNVSWN--ALIGGLVKIG---DLRSARQLFDEMPER---------- 262
             EA  V+  M E  +V+ N   ++  LV      DL + R + D   +           
Sbjct: 187 PSEAVRVYKDM-ELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSN 245

Query: 263 -NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            NV+  T ++D YAK G + +AR LF   P R++VAW+++I  Y Q GQ +EA+ +FSDM
Sbjct: 246 FNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDM 305

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
                 PD+   + ++ AC+ +G L     + +Y+S++++    A +  ALVDM AK G+
Sbjct: 306 RIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTA-IGTALVDMYAKSGD 364

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLT 440
            +RA ++F  +  +DV ++ S+I GL++HGHG +A++ F +M  +  L PDE+ +  VL+
Sbjct: 365 AERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLS 424

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSHVG VEDG   F +M+NV+ I P+ +HY CMVDLL R G L  A  L+  MPVEP+ 
Sbjct: 425 ACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNT 484

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           + W ALL  CK+Y +I++ + V  R+ ELE   +G YVLLSNIYA A RW +V + R  M
Sbjct: 485 AIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELM 544

Query: 561 KERGLRKIPGCSSL 574
           KER ++K  G SS+
Sbjct: 545 KERKIQKSLGHSSV 558


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 340/574 (59%), Gaps = 43/574 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L +++ C     L Q+ +HI   GL       +  ++ C  S +  + Y+  +F++   P
Sbjct: 56  LLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELP 115

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N F WNT++KGY + +     F+ F ++IR  A  D  +F   +KAC        G A+H
Sbjct: 116 NCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVH 175

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           + + + G D D+FV   LI  Y +   +  AR++FDE   ++VV+WT MI GYA    L 
Sbjct: 176 SVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLD 235

Query: 220 EAKTVF------DLMPE----------------------------RSNVS-----WNALI 240
           EA  +F      D+ P                             R +++      NA++
Sbjct: 236 EAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAML 295

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
              VK G L +AR++F+ M  R+V S+T++++GYAK GD+ SAR LF+  P+R++V+W+A
Sbjct: 296 DMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNA 355

Query: 301 LISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVD-SYLSR 358
           +I+GY+QN QP EA+++F +M     + P E  LV ++SA  Q+G L++   +  +++++
Sbjct: 356 MIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNK 415

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             + +S   +  A++DM AKCG++D AA+LF +MP +++VS+ SMI   + +GH ++A++
Sbjct: 416 IGIQVSLI-LKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALT 474

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LFD+M+  GL PD + F  VL+ACS+ G V +G   FE+M+N + + P  EHYACMVDLL
Sbjct: 475 LFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLL 534

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
            R G LK AYEL++ MP+E     WGALL AC+ + ++E+ +L   +L EL+P+++G Y 
Sbjct: 535 SRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYS 594

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LL+NI A   +W DV +VR  M+ERG++K+PG S
Sbjct: 595 LLANICADGKKWKDVRMVRRMMRERGVKKVPGHS 628


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 314/551 (56%), Gaps = 35/551 (6%)

Query: 26  SAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           +    F   +     L+ ++ CK    L ++H+ +I  G  +D  +    +      A  
Sbjct: 16  TVTTKFKSKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARN 75

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIK 144
           + Y+  VF  I  P+++ W T+++G+ + ++  E    F  L+R+  V  +K+TF  V+K
Sbjct: 76  IDYAFWVFVGINYPDSYSWTTMIRGFVE-AKNPEKALEFYGLMRQRGVELNKFTFLFVLK 134

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A     S +EG  +H  +++ G   DVF   +LI +Y K                     
Sbjct: 135 AYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLK--------------------- 173

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
                      G + +A  +FD MP  + V+WN +I G    GD   AR+LF EMPERNV
Sbjct: 174 ----------CGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNV 223

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
            S+  ++ GY+K+G +  ARSLF+  P+RDVV+W ++IS Y QNG+  EA+++F +M   
Sbjct: 224 GSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLA 283

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V  D  I+ S++SAC+Q+G LD+  W+ +Y+ RS +  +   +  ALVDM AKCG +D 
Sbjct: 284 GVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLR-NDVFLDTALVDMYAKCGCIDT 342

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F TMP +++ S+ +M+ GL+IHGHG  A+ LF +M S G+ P+++ F  VL+ACSH
Sbjct: 343 AFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSH 402

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           +G VE+GW+ F  M   + I P  EHY CMVD+L R G +  A E++ +MP+EP+   WG
Sbjct: 403 IGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWG 462

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALL ACK++    +GE V   + +L  ++ G YVLLSNI+A   +W +V   R  MK+ G
Sbjct: 463 ALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMG 522

Query: 565 L-RKIPGCSSL 574
           + +KIPG SS+
Sbjct: 523 VEKKIPGYSSI 533


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/535 (37%), Positives = 315/535 (58%), Gaps = 9/535 (1%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVNP 99
           ++ C  +   +Q+H+  IK       S+ +  ++L    A P    L Y+ ++F+ I  P
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLAL---YADPRINNLQYAHSLFDWIQEP 78

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
               WN L+K Y +N R  +   +F +L+ +  VPD +T P V+K C+ + +++EG  IH
Sbjct: 79  TLVSWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDSFTLPCVLKGCARLGALQEGKQIH 137

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V++ G   D FV +SL+ +Y K  EI   RKVFD M +++VVSW ++I GYA  G++ 
Sbjct: 138 GLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIE 197

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A  +F+ MPE+ + SW  LI GL K G L +AR +FD MP RN VS+  MI+GY K GD
Sbjct: 198 LALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGD 257

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
             +A+ LF+  P+R +V W+++I+GY +N Q  +A+K+F  M  +++ P+   ++  +SA
Sbjct: 258 SNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSA 317

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
            S + +L    WV SY+ +S    +   +   L++M +KCG++  A  +F ++P + +  
Sbjct: 318 ASGMVSLGTGRWVHSYIVKSGFK-TDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGH 376

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + S+I GL +HG   Q + LFD M   GL P  + F  VL ACSH G  ED  R+F+ M 
Sbjct: 377 WTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMT 436

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             Y I PS EHY C++D+L R GHL+ A + +  MP++ +   W +LL   + + +I +G
Sbjct: 437 YDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMG 496

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           E  A  L +L P   G YV+LSN+YA A  W  V  VR  MK++G++K PGCSS+
Sbjct: 497 EYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSI 551


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/553 (36%), Positives = 309/553 (55%), Gaps = 44/553 (7%)

Query: 23  CSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           CS + P+           L+  ++ K    + Q H+ ++K GL  D    +  ++   + 
Sbjct: 4   CSSTTPVPI---------LSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATN 54

Query: 83  ATP--LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
             P  +SY+ ++ NRI +PN F  N++++ Y+ +S      T+F  ++     PDKY+F 
Sbjct: 55  PEPKTVSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFT 114

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            V+KAC+      EG  IH   ++  +  DVFV  +LI++YG+      ARKV D M   
Sbjct: 115 FVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRM--- 171

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
                                       P R  VSWN+L+   +  G +  AR LFDEM 
Sbjct: 172 ----------------------------PVRDAVSWNSLLSAYLDKGLVEEARALFDEME 203

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           ERNV S+  MI GYA  G +  AR +F++ P +DVV+W+A+++ YA  G  +E +++F+ 
Sbjct: 204 ERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNM 263

Query: 321 MCSKNVQ-PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           M   + + PD F LV+++SAC+ +G+L    WV  Y+ +  +++    V  ALVDM +KC
Sbjct: 264 MLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEI-EGFVATALVDMYSKC 322

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +D+A E+F     RDV ++ S+I GLS+HG G+ A+ +F  M+ EG  P+ + F  VL
Sbjct: 323 GKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVL 382

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +AC+HVGL++   + FE M +VY I P+ EHY CMVDLLGR G  + A EL+N +P +  
Sbjct: 383 SACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEA 442

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           +    +LLGACK +  +E  E +ANRL E  P+ +  YV +SN+YA+  RW +   VR K
Sbjct: 443 SILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGK 502

Query: 560 MKERGLRKIPGCS 572
           M+   ++K PGCS
Sbjct: 503 MRAERVKKNPGCS 515



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 23/227 (10%)

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           MSACS    + + ++ +   ++S +++ +AH       +     +  +      T P   
Sbjct: 1   MSACSSTTPVPILSFTER--AKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPK 58

Query: 397 VVSYC----------------SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            VSY                 S+I+  +       A+++F  ML   + PD+ +FT VL 
Sbjct: 59  TVSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLK 118

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           AC+     E+G R    +     +V        ++++ GR+G+ + A ++L+ MPV   A
Sbjct: 119 ACAAFCGFEEG-RQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVR-DA 176

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
            +W +LL A   Y D  L E       E+E +N  S+  + + YA A
Sbjct: 177 VSWNSLLSA---YLDKGLVEEARALFDEMEERNVESWNFMISGYAAA 220


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/595 (35%), Positives = 340/595 (57%), Gaps = 57/595 (9%)

Query: 32  PKPSCLL-----SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP- 85
           P  SC L       L L++ C+ Q  ++QVH+ IIK G  ++ SL    I   +S+++P 
Sbjct: 4   PANSCHLWPSTPPTLLLLRHCETQNDVNQVHARIIKTGYLKNSSLTTKII--LNSISSPH 61

Query: 86  ---LSYSTAVF------NRI----VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132
              + ++  VF       RI    ++ + FLWN ++K YS  +  +    +F  ++    
Sbjct: 62  KPLVEFARYVFFTRYAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGF 121

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
             DK++F L++KAC+ V  V EG  IH  +++  +  ++F+   LI +Y +  +I  AR+
Sbjct: 122 CVDKFSFSLILKACARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQ 181

Query: 193 VFDEMP---------------------------------ERNVVSWTAMIVGYASVGDLV 219
           VFD MP                                 ++N++SW +M+ G+A   D +
Sbjct: 182 VFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGI 241

Query: 220 E-AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             A  +F+ MPER  VSWN +IGG  K G +  A  LF+ MP+R+V+S++ MIDGYAK+G
Sbjct: 242 GLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLG 301

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLM 337
           D+  AR+LF+  PD+DVVA++ +++GYAQNG   EA++IF +M  + N+ PDE  LV  +
Sbjct: 302 DIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVAL 361

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           SA SQ+G+++ +  + +Y   + + ++   V  AL+DM +KCG+++ A  +F+ +  + +
Sbjct: 362 SAISQLGHVEKAASMHNYFLENGISVT-GKVAVALIDMYSKCGSIENAILIFDGVDQKGI 420

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
             + +MI G++ +G G+ A  +   M    + PD + F  VL AC+H GLV++G   FE 
Sbjct: 421 DHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFEL 480

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+ V+ + P  +HY CMVD+LG+ G ++ A + +  MP+EP+   W  LL AC+ + +  
Sbjct: 481 MRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFT 540

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +GEL+A  L  ++  N+ SYVLLSNIYA    W     VR  MK++ L K+PGCS
Sbjct: 541 IGELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCS 595


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/533 (35%), Positives = 314/533 (58%), Gaps = 44/533 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L Y+ +VF  I  PN  +WN + +G++ +S  +    ++V +I    +P+ +TFP ++K+
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   + +EG  IH  V++ G D D++V TSLI +Y +   +  A+KVFD    R+VVS+
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
           TA+I GYAS G +  A+ +FD +P +  VSWNA+I G  + G+ + A +LF EM + NV 
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 265 ---------VS-----------------------------YTTMIDGYAKVGDMTSARSL 286
                    VS                                +ID Y+K G++ +A  L
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
            E   ++DV++W+ LI GY       EA+ +F +M      P++  ++S++ AC+ +G +
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324

Query: 347 DLSNWVDSYLSRSHMDL---SRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
           D+  W+  Y+ +    +   + + +  +L+DM AKCG++D A ++ ++   NR + ++ +
Sbjct: 325 DIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNA 384

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G ++HG    A  +F RM   G+ PD++ F  +L+ACSH G+++ G   F +M+  Y
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDY 444

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P  EHY CM+DLLG +G  K A E++N+MP+EP    W +LL ACK++ ++ELGE  
Sbjct: 445 NITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESF 504

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL-RKIPGCSSL 574
           A +L ++EP+N GSYVLLSNIYATA +W +V  +R+ + ++G+ +K+PGCSS+
Sbjct: 505 AKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSI 557



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 193/417 (46%), Gaps = 47/417 (11%)

Query: 43  LIKKC---KLQTHLHQVHSHIIKKGLEQD----------------------------HSL 71
           L+K C   K      Q+H H++K G + D                            H  
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRD 140

Query: 72  VAHFISLCHSLATP--LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
           V  + +L    A+   +  +  +F+ I   +   WN ++ GY++   + +   +F  +++
Sbjct: 141 VVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMK 200

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
               PD+ T   V+ AC+   S+  G  +H+ +   G   ++ +  +LIDLY K  E+  
Sbjct: 201 TNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVET 260

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVK 245
           A ++ + +  ++V+SW  +I GY  +    EA  +F  M       ++V+  +++     
Sbjct: 261 ACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 320

Query: 246 IGDLRSARQL---FDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFE-AAPDRDVV 296
           +G +   R +    D+  +  VV+      T++ID YAK GD+ +A  + + +A +R + 
Sbjct: 321 LGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLS 380

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            W+A+I G+A +G+ + A  IFS M    ++PD+   V L+SACS  G LDL   +   +
Sbjct: 381 TWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 440

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
            + +    +      ++D+    G    A E+  TMP   D V +CS++K   IHG+
Sbjct: 441 RQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 497


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/579 (36%), Positives = 330/579 (56%), Gaps = 58/579 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+L++     T +HQ+H+  +  GL     L+   I L HS+     Y+  V ++  +P 
Sbjct: 3   LSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDL-HSI----DYARFVLDQTPSPT 57

Query: 101 TFLWNTLLKGYS-----QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
            F WN+L++ Y+     QNS F+     +++++R    P  +TFP V+KACS + SV EG
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFL-----YLKMLRSSTKPSNFTFPFVLKACSTLGSVLEG 112

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH  V+R G   D+FV  SLID+Y K   +  AR  +D+M  R+ VSW ++I GY   
Sbjct: 113 EQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQW 172

Query: 216 GDLVEAKTVFDLMPERSNV-SWNALIGGLVKIGDLRSARQLFDEM--------PER---- 262
           G + +A+ +F+ MP R NV  W A+I G  K GD      LF +M        P      
Sbjct: 173 GQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMV 232

Query: 263 -----------------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
                                        N +  T +ID Y+K GD+  A  +F+    +
Sbjct: 233 CLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCK 292

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           ++ +W+A+I+G  Q G  +EA+ ++  M +++V+P+E  LV+++SAC+ +G L+L   V 
Sbjct: 293 NLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVH 352

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            YL R+ +DL+   +  ALVDM AKCG +D A  +F     +DV  + +MI GL+ HG G
Sbjct: 353 LYLGRNGLDLN-VILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDG 411

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           R ++++F +M+  G+ P++V F  VL+AC+H GLVE+G   F +M + + + P  EHYAC
Sbjct: 412 RDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYAC 471

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLLGR GHLK AYEL+ +M + P +  WGALL AC+++ ++EL + ++  +   +  N
Sbjct: 472 MVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPN 531

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G  +LLSNIYA++ RW DV  VR ++KE+ ++K  GCS
Sbjct: 532 IGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCS 570


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 324/543 (59%), Gaps = 17/543 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+LIK+CK +  L Q+H+ ++   + + + L++  I L       L+Y++ VFN++  PN
Sbjct: 37  LSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDL-----KDLAYASLVFNQLTKPN 91

Query: 101 TFLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            + +N +L+G +    ++     ++ +L       + +T+P +  AC +V  +  G   H
Sbjct: 92  IYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGH 151

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V + G+D D +V  SLI +Y +  E+  ARKVFDEM +R++VSW +MI GY+ +G   
Sbjct: 152 CLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTK 211

Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMI 271
           EA  +F  M E       ++  +++G    +GDL   R +     ++  E N    + +I
Sbjct: 212 EAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALI 271

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K GD+ SAR +F++ P++DVV W+A+I+GYAQNG  +EA+ +F+ M      PD  
Sbjct: 272 DMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRV 331

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            ++ ++SACS +G LDL  WV+++ S   +     +V +AL+DM AKCG++D A  +FE+
Sbjct: 332 TMIEVLSACSTIGALDLGKWVETHASEKGLQ-HDVYVASALIDMYAKCGSLDDAVRVFES 390

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT--PDEVAFTIVLTACSHVGLVE 449
           MP+++ VS+ +MI  L+ HG  ++A+SLF RM  +  T  P+++ F  VL+AC H GLV+
Sbjct: 391 MPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVD 450

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G + FE+M   + +VP  EHY+CMVDL  R G L  A++L+  MP +P     G+LLGA
Sbjct: 451 EGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGA 510

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+   + ++GE V     E+E  N+G+YV+ S IYA   RW D   +R  M++ G+ K P
Sbjct: 511 CQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTP 570

Query: 570 GCS 572
           GCS
Sbjct: 571 GCS 573


>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
 gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 322/564 (57%), Gaps = 15/564 (2%)

Query: 7   PNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLE 66
           PN P   +  +  + N S +  ++   P  +L  L   + C      +Q+H+ +   GL 
Sbjct: 33  PNDPTPQQ-ITQTISNSSNAPTLDLNHP--ILQKLE--QSCTNIKQFNQIHTQLTVLGLF 87

Query: 67  QDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY-SQNSRFIEVFTIFV 125
           Q     + +I    +    +S+  +++N I  P+ F+ NT+++ + + N  F  +   + 
Sbjct: 88  QHPFAASRYIKKLCACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYE 147

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK 185
           ++I +  +P+ YTFPLV K C+ + S+REG  +HA V+++G + D+FV  S I  Y    
Sbjct: 148 KMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCG 207

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
             S AR VFD     ++VSW +MI GY   G+L  A+ +FD M ER   +WN++I G V 
Sbjct: 208 RTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVG 267

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
           +GD+ +AR LFD+MP R+VVS+  MIDG+A++ D++ A   F+  P R+VV+W+ +++ Y
Sbjct: 268 VGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALY 327

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS----RSHM 361
            +  +  + ++ F  M   +  PDE  LVS+++AC+++  LD   WV SY+     +  M
Sbjct: 328 LRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDM 387

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
            LS      AL+ M AKCG MD A E+F+ MP + VVS+ SMI G  IHGHG +A+ +F 
Sbjct: 388 LLS-----TALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFR 442

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
            M   G  P++  F  VL+ACSH G+V +GW +F+ M   Y I P PEHY C+VDLLG+ 
Sbjct: 443 EMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQA 502

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541
           G  + + +L      E   + WG LL AC+ +   E GE++A +L +L P +   Y+LLS
Sbjct: 503 GLKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISEPGEILAKQLIKLFPNHVVPYLLLS 562

Query: 542 NIYATADRWLDVCLVRSKMKERGL 565
           N Y    RW DV  +R  +K + L
Sbjct: 563 NTYVAEGRWDDVENLRMTLKNKTL 586


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 330/573 (57%), Gaps = 42/573 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+++++CK    L Q+ + ++  GL ++    +  ++ C  S +  L Y T +  RI   
Sbjct: 61  LSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKEL 120

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           N F WN  ++GY ++      F ++ R++    + PD +T+PL++K C    S   G  +
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              V+++G + D+FV  + I +     E+S A  VF++   R++V+W +MI G    G  
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240

Query: 219 VEAKTVFDLMPER----------------SNVS-----------------------WNAL 239
           +EA  ++  M                   S V                         NAL
Sbjct: 241 IEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNAL 300

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +   VK G+L +AR LFD M ++ +VS+TTM+ GYA+ G +  AR +    P++ VV W+
Sbjct: 301 MDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWN 360

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+ISG  Q  Q  EA+ +F +M  + ++PD+  +V+ +SACSQ+G LD+  W+  Y+ R 
Sbjct: 361 AIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERH 420

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + +  A +  ALVDM AKCGN+ RA ++FE +P R+ +++ ++I GL++HG+ + A+S 
Sbjct: 421 KLSIDVA-LGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSY 479

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M+  G+ PDE+ F  VL+AC H GLVE+G ++F  M + + + P  +HY+CMVDLLG
Sbjct: 480 FSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLG 539

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R GHL+ A EL+ +MP+   A+  GAL  AC++Y ++++GE  A +L E++PQ++G+YVL
Sbjct: 540 RAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVL 599

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+++Y+ A  W +    R  M ++G+ K PGCS
Sbjct: 600 LASMYSEAKMWKEARSARKLMNDKGVEKTPGCS 632


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 330/573 (57%), Gaps = 42/573 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+++++CK    L Q+ + ++  GL ++    +  ++ C  S +  L Y T +  RI   
Sbjct: 61  LSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKEL 120

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           N F WN  ++GY ++      F ++ R++    + PD +T+PL++K C    S   G  +
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              V+++G + D+FV  + I +     E+S A  VF++   R++V+W +MI G    G  
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240

Query: 219 VEAKTVFDLMPER----------------SNVS-----------------------WNAL 239
           +EA  ++  M                   S V                         NAL
Sbjct: 241 IEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNAL 300

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +   VK G+L +AR LFD M ++ +VS+TTM+ GYA+ G +  AR +    P++ VV W+
Sbjct: 301 MDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWN 360

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+ISG  Q  Q  EA+ +F +M  + ++PD+  +V+ +SACSQ+G LD+  W+  Y+ R 
Sbjct: 361 AIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERH 420

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + +  A +  ALVDM AKCGN+ RA ++FE +P R+ +++ ++I GL++HG+ + A+S 
Sbjct: 421 KLSIDVA-LGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSY 479

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M+  G+ PDE+ F  VL+AC H GLVE+G ++F  M + + + P  +HY+CMVDLLG
Sbjct: 480 FSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLG 539

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R GHL+ A EL+ +MP+   A+  GAL  AC++Y ++++GE  A +L E++PQ++G+YVL
Sbjct: 540 RAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVL 599

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+++Y+ A  W +    R  M ++G+ K PGCS
Sbjct: 600 LASMYSEAKMWKEARSARKLMNDKGVEKTPGCS 632


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 322/572 (56%), Gaps = 40/572 (6%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           AL + +   +   + ++H+H++  GL      ++  I       + L ++  VF +I +P
Sbjct: 314 ALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESP 373

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            TFLWNTLL+G +Q+    +    + +   +   PD  TFP V+KAC+   + +EG  +H
Sbjct: 374 TTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMH 433

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           + VI+ G   D+FV  SLI LY    ++ CAR +FDEM  ++VVSW ++I GY+      
Sbjct: 434 SHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFK 493

Query: 220 EAKTVFDLMP----------------------------------ERSNVS-----WNALI 240
           E   +F+LM                                   ER+++       N LI
Sbjct: 494 EVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLI 553

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
               +IG L+SA ++F +M ++N V+   MI  YAK G++ SA+ +F+  P++D+++WS+
Sbjct: 554 DYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSS 613

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +I  Y+Q     +++++F  M    V+PD  ++ S++SAC+ +G LDL  W+  Y+ R++
Sbjct: 614 MICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNN 673

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           +  +   +  +L+DM AKCG M  A ++F  M  +D +S+ S+I GL+ +G   +A+++F
Sbjct: 674 IK-TDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIF 732

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
             ML+EG  P+EV F  VL AC++  LV++G   FE M+ V+ + P  +HY C+V +L R
Sbjct: 733 YSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSR 792

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L+ A   +N MP+ P    W  LLGACK + ++ + E+   +L EL+P N+G Y+LL
Sbjct: 793 AGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLL 852

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           SNIYA+ADRW D   VR  M +  +RK P CS
Sbjct: 853 SNIYASADRWSDALNVRQWMADTAVRKSPACS 884



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 184/313 (58%), Gaps = 2/313 (0%)

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP +NVVS+  +I G+A  G++  AR LF+  P R+VV+W+ LI GY +     EAV +F
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M +  + P E  +++++ A S +G + +   +  Y  +  + +S A V  +L+D+ AK
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGI-MSDARVGNSLIDLYAK 119

Query: 379 CGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
            G++  + ++F+ M +R ++VS+ S+I G ++HG   +A+ LF  M   G+ P+ + F  
Sbjct: 120 IGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLS 179

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           V+ ACSH GLVE G  FF++M   Y I P  +H+ C++D+LGR G L  A +++  +PVE
Sbjct: 180 VINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVE 239

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
            +   W  LLG C  Y ++E+G+     + +LE ++ G + +LSN+     R+ D    R
Sbjct: 240 VNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQAR 299

Query: 558 SKMKERGLRKIPG 570
             + ER + K+PG
Sbjct: 300 KLLDERKIVKVPG 312



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 206/468 (44%), Gaps = 48/468 (10%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + Y+  +F+++   N   W  L+ GY++   + E   +F  ++     P + T   V+ A
Sbjct: 22  IEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPA 81

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNVVS 204
            S++  +  G  +H   ++ G+  D  VG SLIDLY K   +  + KVFDEM + RN+VS
Sbjct: 82  ISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVS 141

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI----------GGLVKIGDLRSARQ 254
           WT++I G+A  G  VEA  +F  M  R+ +  N +           GGLV+ G       
Sbjct: 142 WTSIISGFAMHGLSVEALELFAEM-RRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSM 200

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALI---SGYAQNGQ 310
           +++   +  +  +  +ID   + G +  A  + E  P + +V+ W  L+   S Y +   
Sbjct: 201 VYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEM 260

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN-------LDLSNWVD---------- 353
              A+K+ SD+  +    D  +L ++++   +  +       LD    V           
Sbjct: 261 GKRAIKMISDL-ERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVTR 319

Query: 354 SYLSRSHMDLSRAH-VIAALVDMNAKCGNMDR-----------AAELFETMPNRDVVSYC 401
           S++    +    AH V++ L +       + R           A ++FE + +     + 
Sbjct: 320 SFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWN 379

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           ++++GL+     + A+  + +   +G+ PD + F  VL AC+     ++G +    +  +
Sbjct: 380 TLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKL 439

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
             ++      + ++ L    G L  A  + + M V+   S W +L+G 
Sbjct: 440 GFLLDIFVSNS-LIHLYAACGDLVCARSIFDEMLVKDVVS-WNSLIGG 485



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 135/255 (52%), Gaps = 15/255 (5%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIG 241
           EI  AR +FD+MP RNVVSWT +I GY       EA  +F  M       S ++  A++ 
Sbjct: 21  EIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVP 80

Query: 242 GLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPD-RDVV 296
            +  +G +     L     ++ ++S      ++ID YAK+G + ++  +F+   D R++V
Sbjct: 81  AISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLV 140

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSY 355
           +W+++ISG+A +G   EA+++F++M    ++P+    +S+++ACS  G ++    +  S 
Sbjct: 141 SWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSM 200

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH-- 412
           +   ++D    H    ++DM  + G +  A ++ E +P   +V+ +  ++   S +G   
Sbjct: 201 VYEYNIDPEIKH-FGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVE 259

Query: 413 -GRQAVSLFDRMLSE 426
            G++A+ +   +  E
Sbjct: 260 MGKRAIKMISDLERE 274


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/543 (36%), Positives = 330/543 (60%), Gaps = 17/543 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+L+K+C     L Q+H+ +I   + + + L+  FI L        + ++ +F++I  PN
Sbjct: 35  LSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDL-----KDFNNASLLFSQIPYPN 89

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
            + +N +++G +   +   +   F   +++  + P+ +T+P V  AC+++L +  G   H
Sbjct: 90  EYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAH 149

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           + V++ G+  D  V  SLI +Y +  E+ CAR+VFDE+ E+++VSW +MI GY+ +G   
Sbjct: 150 SGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAG 209

Query: 220 EAKTVFDLMP----ERSNVSWNALIGGLVKIGDLR--SARQLFDEMPERNVVSY--TTMI 271
           +A  +F  M     E   ++  +++G    +GDL   S  + F    E ++ S+  + +I
Sbjct: 210 DAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALI 269

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             Y K GD++SAR +F+    +DVV W+A+I+GYAQNG  DEA+ +FS M    V PD+ 
Sbjct: 270 GMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKI 329

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            LV ++SAC+ +G LD   W+D+Y S   +  +  +V  AL+DM AKCG++D A  +FE 
Sbjct: 330 TLVGVLSACASIGALDFGKWLDTYASERGLQ-NDIYVSTALIDMYAKCGSLDDALRVFED 388

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVE 449
           MP ++ VS+ +MI  L+ HG  ++++SLF RM  EG  + P++++F  VL+AC H GLV+
Sbjct: 389 MPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVD 448

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G + F+ M + + +VP  EH++CMVDLL R GH+  A++ +  MP +P     GALLGA
Sbjct: 449 EGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGA 508

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+   ++++ E V + L E+EP N+G+Y++ S I+A   RW D   +R  M++RG+ K P
Sbjct: 509 CQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTP 568

Query: 570 GCS 572
           GCS
Sbjct: 569 GCS 571


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 327/575 (56%), Gaps = 42/575 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+L++ CK  + L Q+ + +I  GL  D    +  IS C  S +  L Y   + N + NP
Sbjct: 57  LSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNP 116

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           N F WN +++G  ++    +   ++ R++ R    PD YT+  + K C++++    G  I
Sbjct: 117 NVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEI 176

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              V++ G D+D+++   +I +     E   A KVFDE   R++VSW ++I GY      
Sbjct: 177 LGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQP 236

Query: 219 VEAKTVFDLMP----------------------------------ERSNVSW-----NAL 239
            EA  ++  M                                   E S ++      NAL
Sbjct: 237 REAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNAL 296

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +   VK GDL + + LFD M ++ VVS+TTMI GYAK G +  A  LF   P+++VVAW+
Sbjct: 297 MDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWN 356

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+I    Q     EA+++F +M   N++PD+  ++  +SACSQ+G LD   W  +Y+ + 
Sbjct: 357 AMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKH 416

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
           ++ L  A +  AL+DM AKCGNM +A ++F  MP R+ +++ ++I GL+++G+   A+  
Sbjct: 417 NLSLDVA-LGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFY 475

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F +M+  GL PDE+ F  VLTAC H GLVE+G ++F+ M++ + + P P+HY+CMV+LLG
Sbjct: 476 FSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLG 535

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G L+ A EL+ +MP+E  A  WGAL  AC ++ ++ +GE  A++L +L+P ++G YVL
Sbjct: 536 RAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVL 595

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L+N+Y  A +W +   +R  M ERG+ K PG SS+
Sbjct: 596 LANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSI 630


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/503 (37%), Positives = 304/503 (60%), Gaps = 20/503 (3%)

Query: 86  LSYSTAVFNRIVNPNT---FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           + YS  +F+++ + ++    +WN +++GY+ N  F E   +F  + +    P  +T+P V
Sbjct: 1   MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK-----------EISCAR 191
           I +C  +     G  +H  +++ G +    V  SL ++Y K             ++  AR
Sbjct: 61  INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYAR 120

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
           K+FD+M  R V  W  MI  Y ++GD+  A+ +FD+MPER  VSWN++I G  K G + +
Sbjct: 121 KIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVAN 180

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           AR LF++MPE+NV+S+T+MI  YA   D+ +ARS FE  P R+VV+W+++IS YA++G+ 
Sbjct: 181 ARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKF 240

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI-- 369
            E++ +F  M S+ V PD +  VS++SACS +G+L+   ++  YLS    DLS++ V+  
Sbjct: 241 VESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYI-HYLSG---DLSQSEVMVG 296

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            AL +M A+CG++D+A  +F  +  RDV  +  +IK L++HG   +A+ +F  M   GL 
Sbjct: 297 TALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLK 356

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           P++  FT  L ACSH GLVE+G   F +M+  Y I+P   HY C++D+L R G L+ A  
Sbjct: 357 PNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAML 416

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
           L+  MP +P  + WGALLG C++  D++L E V  +  E+E   +G YVLLSNI+A+A +
Sbjct: 417 LVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQ 476

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W++    R KM E+ + K  G S
Sbjct: 477 WIEAADARKKMDEKKISKKTGSS 499



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 2/174 (1%)

Query: 59  HIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI 118
           H +   L Q   +V   ++  ++    +  + AVF +I   + F WN ++K  + + R  
Sbjct: 282 HYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSE 341

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSL 177
           E   IF+ + +    P+ +TF   + ACSH   V EG  I  ++ + + +   +     L
Sbjct: 342 EAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCL 401

Query: 178 IDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           ID+  +  ++  A  + ++MP + +V  W A++ G    GDL  A+ V +   E
Sbjct: 402 IDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATE 455


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 329/546 (60%), Gaps = 25/546 (4%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +L+++C     L Q+H+ ++   + + +S +     L        +Y++  F+ I++P  
Sbjct: 37  SLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADL-----KDFAYASVFFSNILDPTE 91

Query: 102 FLWNTLLKG----YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           + +N +++G    ++++S  +E ++   R+      P+  T+P +  ACS++L+V  G  
Sbjct: 92  YSFNVMIRGLSTAWNKSSLALEFYS---RMKFLGLKPNNLTYPFLFIACSNLLAVENGRM 148

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
            H +VIR G+DED  V  SLI +Y +  ++  ARKVFDE+ ++++VSW +MI GY+ +  
Sbjct: 149 GHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRH 208

Query: 218 LVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTT 269
             EA  +F  M E     + +S  +++G   ++GDL+    + + + E     N    + 
Sbjct: 209 AGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA 268

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y K GD+ SAR +F++   +D V W+A+I+GYAQNG  +EA+K+F DM   +  PD
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPD 328

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLS-RSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +  L+ ++SAC+ +G LDL   V+ Y S R   D    +V  ALVDM AKCG++D A  +
Sbjct: 329 QITLIGILSACASIGALDLGKQVEIYASERGFQD--DVYVGTALVDMYAKCGSLDNAFRV 386

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVG 446
           F  MPN++ VS+ +MI  L+ HG  ++A++LF  M++EG  ++P+++ F  VL+AC H G
Sbjct: 387 FYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LV++G R F  M + + +VP  EHY+CMVDL  R GHL+ A++ + +MP +P     GAL
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGAC+   +I++ E V   L ELEP N+G+YV+ S +YA   RW D   +R  MK++G+ 
Sbjct: 507 LGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVS 566

Query: 567 KIPGCS 572
           K PGCS
Sbjct: 567 KTPGCS 572


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/534 (37%), Positives = 292/534 (54%), Gaps = 63/534 (11%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS-YSTAVFNRIVNP 99
           +T +  CK  T + QVH+ I+  GL+Q   ++A  I     L  P+  Y  ++FN++  P
Sbjct: 50  VTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYP 109

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N FL+N L++GY    R  E    +  + +E  VP  +TF  + KAC             
Sbjct: 110 NPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKAC------------- 156

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
                 G   DV +G                         R +   T ++ G+    DL 
Sbjct: 157 ------GAKMDVGLG-------------------------RQIHGQTILVGGFGE--DLH 183

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
              ++ D+                +K G L   R++FDEMP R+V+S+T +I  Y K G+
Sbjct: 184 VGNSMIDM---------------YIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGN 228

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M SA  LF+  P +D+VAW+ ++SG+AQN +P EA+  F  M    V+ DE  L+ ++SA
Sbjct: 229 MESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISA 288

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVV 398
           C+Q+G    ++W+     +S      + V+ +AL+DM +KCG++  A  +F+ M  R+V 
Sbjct: 289 CAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVY 348

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           SY SMI G ++HG    A+ LFD M+   + P+ V F  VLTACSH G+VE GW+ FE M
Sbjct: 349 SYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELM 408

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           +  Y I PS +HY CMVDLLGR G L+ A+EL+ +MP+EPH   WGALLGAC+++   ++
Sbjct: 409 EKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDI 468

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             + AN LFELEP   G+Y+LL+NIYA+  RW DV  VR  M+ RGLRK P  S
Sbjct: 469 AAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFS 522


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/592 (35%), Positives = 324/592 (54%), Gaps = 50/592 (8%)

Query: 26  SAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT- 84
           +  I   K  C+     L++ C+   HL Q+H+ I + GL+ +   +   +  C   +  
Sbjct: 9   AGRIRLSKNYCV----DLLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRG 64

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            + Y+  V   + +P   ++N ++K  +++  F +V  +F  L ++   PD +T P V K
Sbjct: 65  SIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFK 124

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A   +  V EG  +H  V++ G D    V  S++ +YG   ++  A+KVFDE+PER+VVS
Sbjct: 125 AMGCLGKVVEGEKVHGYVVKSGFD--ACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVS 182

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVS----------------------------- 235
           W  +I  Y       +A  VF  M   SN+                              
Sbjct: 183 WNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYV 242

Query: 236 ----------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
                      NAL+    K G +  AR +FDEM  +NV+ +T+M+ GYA  G +  AR 
Sbjct: 243 DAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARE 302

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LFE +P RD+V W+A+I+GY Q    DEA+K+F  M  + ++PD FILV+L+  C+Q G 
Sbjct: 303 LFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGA 362

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+   W+  Y+  + + L R  V  ALVD+ AKCG +++A E+F  M  RD  S+ S+I 
Sbjct: 363 LEQGKWLHGYIHENSITLDRV-VGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIY 421

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL+++G   +A+  F +M   G  PD++ F  VLTAC+H GLVE+G R+F++M   Y I 
Sbjct: 422 GLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQ 481

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH---ASAWGALLGACKLYSDIELGELV 522
           P  EHY+C++DLL R G L  A  LL  +P+E        + +LL AC+ Y ++++ E V
Sbjct: 482 PKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERV 541

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             RL  +E +++  + LL+++YA+A+RW DV  VR KMKE G+RK PGCSS+
Sbjct: 542 GRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSI 593


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 325/557 (58%), Gaps = 41/557 (7%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-S 77
           M+   +     N  +PS      +L K C     L Q+H+ +I KG   + + +   I +
Sbjct: 1   MIRKRTNDRSTNRKQPS------SLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFA 54

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
              +++  ++Y+  VF +I  P+ F+WNT+++G SQ+    +V  ++ ++      PDK+
Sbjct: 55  GAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKF 114

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TF  ++K C+ +   + G  +H  V+++G + + FV  +LI  +                
Sbjct: 115 TFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFH---------------- 158

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
                          ++ GDLV A+++F  +PERS VSW+AL  G  + G+L  ARQ+FD
Sbjct: 159 ---------------SNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFD 203

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
           EMP +++VS+  MI GY K G+M +AR+LF+ AP++DVV W+ +I+GY   G+  +A+++
Sbjct: 204 EMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEM 263

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR-SHMDLSRAHVIAALVDMN 376
           F +M +    PDE  ++SL+SAC+ +G+L +   +   +S  +  DLS   +  ALVDM 
Sbjct: 264 FEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLS-VLLGNALVDMY 322

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAF 435
           AKCG+++ A ++F+ M  +DV ++ S+I GL+ HGH  +++ LF  M + + + P+E+ F
Sbjct: 323 AKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITF 382

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             V+ ACSH G VE+G R+F+ M+  Y I P+  H+ CMVDLLGR G L  A+EL+  M 
Sbjct: 383 VGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKME 442

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           +EP+A  W  LLGAC+++ ++ELG L   RL +L    +G YVLLSNIYA+A  W     
Sbjct: 443 IEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGAEE 502

Query: 556 VRSKMKERGLRKIPGCS 572
           VR  M + G+RK  G S
Sbjct: 503 VRKLMDDGGVRKEAGRS 519


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 321/551 (58%), Gaps = 47/551 (8%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL---ATP 85
           ++ P  S  L+ALT        +HLHQ H+H+I  GL      V   ++ C +L   A+ 
Sbjct: 9   LHHPSLSQALTALTA------TSHLHQAHAHLIVSGLASHPFTVTRLLA-CAALSPSASD 61

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L ++  +F    NP+ F++NT++     +SR ++  T +V ++     PD +TFP +IK+
Sbjct: 62  LPHAKTIFLHTHNPSPFMFNTIIMA---SSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKS 118

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVS 204
            S   +   G  +HA V+++G+D DVFV  ++I LY   +E+  ARKVFDE     +VVS
Sbjct: 119 SSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVS 178

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           WT +I G+++ G + EA+ +FDLMP ++ VSWNA+I G      +  AR+LFDEMP+R+ 
Sbjct: 179 WTTLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDA 238

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
            S++ M+ GY+++                               G  +EA+ +F +M + 
Sbjct: 239 ASWSAMVSGYSQL-------------------------------GMCNEALDLFMEMVTG 267

Query: 325 N-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + + P+E  LVS +SAC+Q+  L+   W+ SY+    + ++   +   L+DM  KCG++ 
Sbjct: 268 DKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRIN-VTLGTVLLDMYGKCGSIL 326

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            AA +F  M  R+V S+ SMI GL+++G G++A++LF +M   G +P+ + F  +LT CS
Sbjct: 327 DAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCS 386

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+ +G   F  M  VY I P  +HY CMVDLLGR G +K A + +  MP++PH+  W
Sbjct: 387 HSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELW 446

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GAL+GAC+++  +ELGE +  RL +LEP + G Y LL NI+A A RW DV +VR   K R
Sbjct: 447 GALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRDLEKGR 506

Query: 564 GLRKIPGCSSL 574
            + K PG + L
Sbjct: 507 KVLKNPGNNGL 517


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 328/546 (60%), Gaps = 25/546 (4%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +L+++C     L Q+H+ ++   + + +S +     L        +Y++  F+ I++P  
Sbjct: 37  SLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKIADL-----KDFAYASVFFSNILDPTE 91

Query: 102 FLWNTLLKG----YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           + +N +++G    ++++S  +E ++   R+      P+  T+P +  ACS++L+V  G  
Sbjct: 92  YSFNVMIRGLSTAWNKSSLALEFYS---RMKFLGLKPNNLTYPFLFIACSNLLAVENGRM 148

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
            H +VIR G+DED  V  SLI +Y +  ++  ARKVFDE+ ++++VSW +MI GY+ +  
Sbjct: 149 GHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRH 208

Query: 218 LVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTT 269
             EA  +F  M E     + +S  +++G   ++GDL+    + + + E     N    + 
Sbjct: 209 AGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA 268

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y K GD+ SAR +F++   +D V W+A+I+GYAQNG  +EA+K+F DM   +  PD
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPD 328

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLS-RSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +  L+ ++SAC+ +G LDL   V+ Y S R   D    +V  ALVDM AKCG++D A  +
Sbjct: 329 QITLIGILSACASIGALDLGKQVEIYASERGFQD--DVYVGTALVDMYAKCGSLDNAFRV 386

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVG 446
           F  MP ++ VS+ +MI  L+ HG  ++A++LF  M++EG  ++P+++ F  VL+AC H G
Sbjct: 387 FYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LV++G R F  M + + +VP  EHY+CMVDL  R GHL+ A++ + +MP +P     GAL
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGAC+   +I++ E V   L ELEP N+G+YV+ S +YA   RW D   +R  MK++G+ 
Sbjct: 507 LGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVS 566

Query: 567 KIPGCS 572
           K PGCS
Sbjct: 567 KTPGCS 572


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/576 (35%), Positives = 326/576 (56%), Gaps = 45/576 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNRIVN 98
           L+  CK   H+ Q+H+ I++  ++  + L+   +  C +L +P    L Y+ ++F+ I N
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P T   N LL+ +S+        ++++ L R     D+++FP ++KA S + ++  G  I
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 159 HAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG- 216
           H    ++G    D F+ ++LI +Y     I  AR +FD+M  R+VV+W  MI GY+    
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAH 197

Query: 217 ------------------DLVEAKTVFDLMPERSNVSWNALIGGLVK------------- 245
                             D +   TV        N+S+   I   +K             
Sbjct: 198 YDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS 257

Query: 246 -------IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                   G +  AR+++D++P +++V  T M+ GYAK+G +  AR +F+   ++D+V W
Sbjct: 258 LVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCW 317

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           SA+ISGYA++ QP EA+++F++M  + + PD+  ++S++SAC+ VG L  + W+ +Y  +
Sbjct: 318 SAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADK 377

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
           +    +   +  AL+DM AKCGN+ +A E+FE MP ++V+S+ SMI   ++HG    A++
Sbjct: 378 NGFGRTLP-INNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIA 436

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF RM  + + P+ V F  VL ACSH GLVE+G +FF +M N + I P  EHY CMVDL 
Sbjct: 437 LFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLY 496

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
            R  HL+ A EL+ +MP  P+   WG+L+ AC+ + +IELGE  A RL ELEP + G+ V
Sbjct: 497 CRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALV 556

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +LSNIYA   RW DV LVR  MK +G+ K   CS +
Sbjct: 557 VLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRI 592


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 310/558 (55%), Gaps = 71/558 (12%)

Query: 26  SAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           S   +F K SC+     L+K CK   HL Q+ + I++ G  Q    +  F+  C   +  
Sbjct: 25  STSSHFTKKSCIF----LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIG 80

Query: 86  -LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVI 143
            L Y+  +FN I  P  F++N ++K +++N  F +   +F R +REE + PD +T+P V 
Sbjct: 81  NLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLF-RQLREEGLSPDNFTYPFVF 139

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           KA   +  VREG  ++  V++ G++ D +V  SL+D+Y                      
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMY---------------------- 177

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA----RQLFDEM 259
                    A VG +   + VF+ MP+R  VSWN LI G VK      A    RQ+F++M
Sbjct: 178 ---------AEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDM 228

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P + V+ +T+M+ GY   G +  AR LFE +P RDVV W+A+I+GY Q  + D+AV +F 
Sbjct: 229 PIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFR 288

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           +M  K V PD F LV+L                          L+ A V  AL++M AKC
Sbjct: 289 EMQIKRVSPDRFTLVAL--------------------------LTDAVVGTALIEMYAKC 322

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G ++++ E+F  +  +D  S+ S+I GL+++G   +A+ LF  M+  G+ PD++ F  VL
Sbjct: 323 GFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVL 382

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---V 496
           +ACSH GLVE+G + F +M  VY I P  EHY C++DLLGR G L  A EL+   P    
Sbjct: 383 SACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNN 442

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           E     +GALL AC+ + ++E+GE VA RL  +E  ++  + LL+NIYA+ADRW DV  V
Sbjct: 443 EVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKV 502

Query: 557 RSKMKERGLRKIPGCSSL 574
           R KMK+ G++K+PGCSS+
Sbjct: 503 RRKMKDLGVKKVPGCSSV 520


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/449 (40%), Positives = 283/449 (63%), Gaps = 2/449 (0%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           ++R + +P K +F L++++C+     + G A H  +++ G + D+ + T L+D Y K  +
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           + CA++VF  MP R+VV+  AMI   +  G + EA+ +FD M ER++ SWN++I    K+
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE-AAPDRDVVAWSALISGY 305
           GD+ SAR +FD  P ++VVS+  +IDGY K   + +A+ LF      R+ V W+ +IS Y
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            Q G+   A+ +F  M S+NV+P E  +VSL+SAC+ +G LD+  W+  Y+    + +  
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             +  AL+DM  KCG ++ A ++F  +  +++  + S+I GL ++G G +A++ F  M  
Sbjct: 241 V-LGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEK 299

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
           EG+ PD V F  +L+ CSH GL+  G R+F  M  VY + P  EHY CMVDLLGR G+LK
Sbjct: 300 EGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLK 359

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            A EL+ +MP++P++   G+LL AC+++ D +LGE V  +L EL+P + G+YV LSN+YA
Sbjct: 360 EALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYA 419

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +  RW DV   R  M +RG+ K PGCSS+
Sbjct: 420 SLSRWDDVNTCRKLMIKRGVHKTPGCSSI 448



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N+  WNT++  Y Q   F    ++F ++  E   P + T   ++ AC+H+ ++  G  IH
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +    +  DV +G +LID+Y K   +  A  VF  +  +N+  W ++IVG    G   
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 288

Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEM-----PERNVVSYTTM 270
           EA   F +M +       V++  ++ G    G L + ++ F EM      E  V  Y  M
Sbjct: 289 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCM 348

Query: 271 IDGYAKVGDMTSARSLFEAAP 291
           +D   + G +  A  L  A P
Sbjct: 349 VDLLGRAGYLKEALELIRAMP 369



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 2/146 (1%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H +I  K L+ D  L    I + +     L  +  VF+ +   N F WN+++ G   N 
Sbjct: 227 IHGYIRTKRLKIDVVLGNALIDM-YCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG 285

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
           R  E    F+ + +E   PD  TF  ++  CSH   +  G    + ++  +G++  V   
Sbjct: 286 RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHY 345

Query: 175 TSLIDLYGKRKEISCARKVFDEMPER 200
             ++DL G+   +  A ++   MP +
Sbjct: 346 GCMVDLLGRAGYLKEALELIRAMPMK 371


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/515 (38%), Positives = 302/515 (58%), Gaps = 34/515 (6%)

Query: 60  IIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI 118
           +I KG   + S +   I     +++  ++Y+  +F  I  P+TF+WNT+++G +Q+   +
Sbjct: 1   MIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPL 60

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI 178
              +++ ++      PDK+TFP V+KAC+ +  V+ G  +H  V R G + + FV  +LI
Sbjct: 61  NAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 120

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA 238
             +                               A+ GDL  A+ +FD   +R  V+W+A
Sbjct: 121 YFH-------------------------------ANCGDLAVARALFDGSAKRDVVAWSA 149

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           L  G  + G+L  ARQLFDEMP +++VS+  MI GYAK G+M SAR LF+  P RDVV W
Sbjct: 150 LTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTW 209

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+I+GY   G   +A+++F +M S    PDE  ++SL+SAC+ +G+LD    +   +S 
Sbjct: 210 NAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISE 269

Query: 359 -SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
               DLS   +  AL+DM AKCG++ RA E+F+ M  +DV ++ S++ GL+ HGH  +++
Sbjct: 270 MGFRDLS-VLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSI 328

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LF  M    + PDE+ F  VL ACSH G VE+G ++F+ M++ Y I P+  HY CMVDL
Sbjct: 329 HLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDL 388

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR G L  A++ +++M +EP+A  W  LLGAC+++ ++ELG     +L ++    +G Y
Sbjct: 389 LGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDY 448

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VLLSNIYA+   W  V  VR  M + G+RK  GCS
Sbjct: 449 VLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCS 483



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 38  LSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++ L+L+  C     L    ++H  I + G      L+ + +   ++    +  +  VF 
Sbjct: 242 VTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQ 301

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            +   +   WN++L G + +    +   +F  + + +  PD+ TF  V+ ACSH   V E
Sbjct: 302 GMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEE 361

Query: 155 GTAIHAAVIR--WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           G   +  ++R  + ++ ++     ++DL G+   ++ A    D M  E N + W  ++
Sbjct: 362 GRQ-YFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLL 418


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 292/485 (60%), Gaps = 17/485 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   N+  WN LL  Y  N R  E   +F           K  + L+   C     
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF---------ESKSDWDLISWNCLMGGF 214

Query: 152 VREGTAIHAAVIRWGVDE----DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           VR+     A   RW  D+    D     ++I  Y +   +S AR++FDE P R+V +WTA
Sbjct: 215 VRKKKLGDA---RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTA 271

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+ GY   G L EAKT FD MPE++ VS+NA+I G V+   +  AR+LF+ MP RN+ S+
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW 331

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            TMI GY ++GD+  AR  F+  P RD V+W+A+I+GYAQ+G  +EA+ +F ++      
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +       +S C+ +  L+L   +     +     +   V  AL+ M  KCG++D A +
Sbjct: 392 LNRATFGCALSTCADIAALELGKQIHGQAVKMGYG-TGCFVGNALLAMYFKCGSIDEAND 450

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
            FE +  +DVVS+ +M+ G + HG GRQA+++F+ M + G+ PDE+    VL+ACSH GL
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGL 510

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           ++ G  +F +M   Y ++P+ +HY CM+DLLGR G L+ A +L+ +MP +P A++WGALL
Sbjct: 511 LDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL 570

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GA +++ + ELGE  A  +F++EPQN+G YVLLSN+YA + RW+D   +RSKM++ G++K
Sbjct: 571 GASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQK 630

Query: 568 IPGCS 572
           +PG S
Sbjct: 631 VPGYS 635



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 193/360 (53%), Gaps = 17/360 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VFN +   ++  +N ++ GY +NS+F     +F      + +P++  F   +    +V +
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF------DQMPERDLFSWNVMLTGYVRN 124

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
            R G A    +     ++DV    SL+  Y +   +  AR+VFD MPE+N +SW  ++  
Sbjct: 125 CRLGDA--RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   G + EA  +F+   +   +SWN L+GG V+   L  AR LFD+MP R+ +S+ TMI
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GYA+ G ++ AR LF+ +P RDV  W+A++SGY QNG  DEA   F +M  KN    E 
Sbjct: 243 SGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EV 298

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              ++++   Q   +D++   + + S    ++S  +    ++    + G++ +A + F+ 
Sbjct: 299 SYNAMIAGYVQTKKMDIAR--ELFESMPCRNISSWNT---MITGYGQIGDIAQARKFFDM 353

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           MP RD VS+ ++I G +  GH  +A+++F  +  +G + +   F   L+ C+ +  +E G
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 54/365 (14%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D D+      I  + +      A  VF+ MP R+ VS+ AMI GY        A+ +FD 
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPER   SWN ++ G V+   L  AR+LFD MPE++VVS+ +++ GYA+ G +  AR +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P+++ ++W+ L++ Y  NG+ +EA  +F                             
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFE---------------------------- 197

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                    S+S  DL   + +        K G+   A  LF+ MP RD +S+ +MI G 
Sbjct: 198 ---------SKSDWDLISWNCLMGGFVRKKKLGD---ARWLFDKMPVRDAISWNTMISGY 245

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +  G   QA  LFD    E  T D   +T +++     G++++   FF+ M     +   
Sbjct: 246 AQGGGLSQARRLFD----ESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV--- 298

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
              Y  M+    +T  +  A EL  SMP   + S+W  ++       DI      A + F
Sbjct: 299 --SYNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIGDIA----QARKFF 351

Query: 528 ELEPQ 532
           ++ PQ
Sbjct: 352 DMMPQ 356



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 164/381 (43%), Gaps = 82/381 (21%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  +F+     + F W  ++ GY QN    E  T F      + +P+K         
Sbjct: 251 LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF------DEMPEKNEVSY---- 300

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
                                         ++I  Y + K++  AR++F+ MP RN+ SW
Sbjct: 301 -----------------------------NAMIAGYVQTKKMDIARELFESMPCRNISSW 331

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN-- 263
             MI GY  +GD+ +A+  FD+MP+R  VSW A+I G  + G    A  +F E+ +    
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391

Query: 264 ------------------------------VVSYTT-------MIDGYAKVGDMTSARSL 286
                                          + Y T       ++  Y K G +  A   
Sbjct: 392 LNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDT 451

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE   ++DVV+W+ +++GYA++G   +A+ +F  M +  V+PDE  +V ++SACS  G L
Sbjct: 452 FEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLL 511

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIK 405
           D        +++ +  +  +     ++D+  + G ++ A +L   MP +    S+ +++ 
Sbjct: 512 DRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLG 571

Query: 406 GLSIHGH---GRQAVSLFDRM 423
              IHG+   G +A  +  +M
Sbjct: 572 ASRIHGNTELGEKAAEMVFKM 592



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 128/566 (22%), Positives = 220/566 (38%), Gaps = 122/566 (21%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           ++ +   F+ +   +   W  ++ GY+Q+  + E   +FV + ++    ++ TF   +  
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALST 403

Query: 146 CS-----------HVLSVREG--------TAIHAAVIRWG-VDE--DVFVGTSLIDL--- 180
           C+           H  +V+ G         A+ A   + G +DE  D F G    D+   
Sbjct: 404 CADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSW 463

Query: 181 ------YGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS----VGDLVEAKTVFDLMPE 230
                 Y +      A  VF+ M    V      +VG  S     G L      F  M +
Sbjct: 464 NTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK 523

Query: 231 RSNV-----SWNALIGGLVKIGDLRSARQLFDEMP-ERNVVSYTTM-----IDGYAKVGD 279
              V      +  +I  L + G L  A+ L   MP +    S+  +     I G  ++G+
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS---DMCSKNVQPDEFILVSL 336
             +A  +F+  P ++   +  L + YA +G+  +A K+ S   D+  + V    ++ V  
Sbjct: 584 -KAAEMVFKMEP-QNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641

Query: 337 MSACSQVGN---------------LDLSNWVDSYLSRSHMDL------SRAHVIAALVDM 375
                 VG+               LDL    + Y+S + + L       + H++    + 
Sbjct: 642 KIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEK 701

Query: 376 NAKCGNMDR--AAELFETMPNRDVVSYC-SMIKGLS-IHGHGRQAVSLFD----RMLSEG 427
            A    +           M N  V   C S IK +S I G   + + L D       +EG
Sbjct: 702 LAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVG---RLIILRDSHRFHHFNEG 758

Query: 428 L-TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
             +  +      L    + GL++ G  +F  M   Y++ P+ +HY CM+DLLGR   L+ 
Sbjct: 759 FCSCGDYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE 818

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
                            GALLGA +++ + ELGE  A   F++ PQN+G           
Sbjct: 819 -----------------GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------- 851

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
                      SKM++ G++K+PG S
Sbjct: 852 -----------SKMRDVGVQKVPGYS 866


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 291/485 (60%), Gaps = 17/485 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   N+  WN LL  Y  N R  E   +F           K  + L+   C     
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF---------ESKSDWDLISWNCLMGGF 214

Query: 152 VREGTAIHAAVIRWGVDE----DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           VR+     A   RW  D+    D     ++I  Y +   +S AR++FDE P R+V +WTA
Sbjct: 215 VRKKKLGDA---RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTA 271

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+ GY   G L EAKT FD MPE++ VS+NA+I G V+   +  AR+LF+ MP RN+ S+
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW 331

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            TMI GY ++GD+  AR  F+  P RD V+W+A+I+GYAQ+G  +EA+ +F ++      
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +       +S C+ +  L+L   +     +         V  AL+ M  KCG++D A +
Sbjct: 392 LNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTG-CFVGNALLAMYFKCGSIDEAND 450

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
            FE +  +DVVS+ +M+ G + HG GRQA+++F+ M + G+ PDE+    VL+ACSH GL
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGL 510

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           ++ G  +F +M   Y ++P+ +HY CM+DLLGR G L+ A +L+ +MP +P A++WGALL
Sbjct: 511 LDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL 570

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GA +++ + ELGE  A  +F++EPQN+G YVLLSN+YA + RW+D   +RSKM++ G++K
Sbjct: 571 GASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQK 630

Query: 568 IPGCS 572
           +PG S
Sbjct: 631 VPGYS 635



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 193/360 (53%), Gaps = 17/360 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VFN +   ++  +N ++ GY +NS+F     +F      + +P++  F   +    +V +
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF------DQMPERDLFSWNVMLTGYVRN 124

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
            R G A    +     ++DV    SL+  Y +   +  AR+VFD MPE+N +SW  ++  
Sbjct: 125 CRLGDA--RRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   G + EA  +F+   +   +SWN L+GG V+   L  AR LFD+MP R+ +S+ TMI
Sbjct: 183 YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMI 242

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GYA+ G ++ AR LF+ +P RDV  W+A++SGY QNG  DEA   F +M  KN    E 
Sbjct: 243 SGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EV 298

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              ++++   Q   +D++   + + S    ++S  +    ++    + G++ +A + F+ 
Sbjct: 299 SYNAMIAGYVQTKKMDIAR--ELFESMPCRNISSWNT---MITGYGQIGDIAQARKFFDM 353

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           MP RD VS+ ++I G +  GH  +A+++F  +  +G + +   F   L+ C+ +  +E G
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 54/365 (14%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D D+      I  + +      A  VF+ MP R+ VS+ AMI GY        A+ +FD 
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPER   SWN ++ G V+   L  AR+LFD MPE++VVS+ +++ GYA+ G +  AR +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P+++ ++W+ L++ Y  NG+ +EA  +F                             
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFE---------------------------- 197

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                    S+S  DL   + +        K G+   A  LF+ MP RD +S+ +MI G 
Sbjct: 198 ---------SKSDWDLISWNCLMGGFVRKKKLGD---ARWLFDKMPVRDAISWNTMISGY 245

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +  G   QA  LFD    E  T D   +T +++     G++++   FF+ M     +   
Sbjct: 246 AQGGGLSQARRLFD----ESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV--- 298

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
              Y  M+    +T  +  A EL  SMP   + S+W  ++       DI      A + F
Sbjct: 299 --SYNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQ----ARKFF 351

Query: 528 ELEPQ 532
           ++ PQ
Sbjct: 352 DMMPQ 356



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 164/381 (43%), Gaps = 82/381 (21%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  +F+     + F W  ++ GY QN    E  T F      + +P+K         
Sbjct: 251 LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF------DEMPEKNEVSY---- 300

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
                                         ++I  Y + K++  AR++F+ MP RN+ SW
Sbjct: 301 -----------------------------NAMIAGYVQTKKMDIARELFESMPCRNISSW 331

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN-- 263
             MI GY  +GD+ +A+  FD+MP+R  VSW A+I G  + G    A  +F E+ +    
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391

Query: 264 ------------------------------VVSYTT-------MIDGYAKVGDMTSARSL 286
                                          + Y T       ++  Y K G +  A   
Sbjct: 392 LNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDT 451

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE   ++DVV+W+ +++GYA++G   +A+ +F  M +  V+PDE  +V ++SACS  G L
Sbjct: 452 FEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLL 511

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIK 405
           D        +++ +  +  +     ++D+  + G ++ A +L   MP +    S+ +++ 
Sbjct: 512 DRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLG 571

Query: 406 GLSIHGH---GRQAVSLFDRM 423
              IHG+   G +A  +  +M
Sbjct: 572 ASRIHGNTELGEKAAEMVFKM 592


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 321/521 (61%), Gaps = 24/521 (4%)

Query: 69  HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS---RFIEVFTIFV 125
           + L+AH +S+  SL    +YS     R+++  T  WN++L+ +  ++   R ++ +T  +
Sbjct: 14  NKLIAHVLSM-GSLGVGYAYSVFAHTRVLDVLT--WNSMLRAFVNSNMPRRALQSYTEML 70

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK 185
              R   VPD++TFP ++K C+ +L  + G  +H  V+++ +  D+++ T+L+++Y    
Sbjct: 71  E--RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG 128

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIG 241
           ++  AR +F+ M  RN V WT+MI GY       EA  ++  M E       V+   L+ 
Sbjct: 129 DLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVS 188

Query: 242 GLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
              ++ DL    +L   + E ++    V  + +++ YAK GD+ +AR +F+   D+DV A
Sbjct: 189 ACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYA 248

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           WSALI GY +N +  EA+++F ++    N++P+E  +++++SAC+Q+G+L+   WV  Y+
Sbjct: 249 WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 357 SRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           +R+     + H ++   +L+DM +KCG++D A  +F++M  +D++S+ SM+ GL++HG G
Sbjct: 309 TRTQ----KGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLG 364

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           R+A++ F  M +  L PDE+ F  VLTACSH GLV++G + F  ++ +Y +    EHY C
Sbjct: 365 REALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLL R G L  A E +  MP++P  + WG++LGAC++Y+++ELGE  A  L ELEP N
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTN 484

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            G Y+LLSNIYA    W +V  VR  M E+G++K PGCSS+
Sbjct: 485 DGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSV 525


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 311/538 (57%), Gaps = 58/538 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP-LSYSTAVFNRIVNP 99
           L+LI +C     L Q+H+ +++ GL  D    +  I+       P L Y+  VF++I +P
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAI 158
           N + WNTL++ Y+ +S   +   IF+R++ +    PDK+TFP +IKA S +  +  G A 
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  VI+  +  DVF+  SLI  Y K  E+    +VF  +P R+VVSW +MI  +   G  
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCP 218

Query: 219 VEAKTVFDLMPERSNVSW-NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
            EA  +F  M  +++++  NA++    K G +  A++LFD+MPE+++VS+TTM+ GYAK+
Sbjct: 219 EEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 278

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSL 336
           G+  +A+ +F+A P++D+ AW+ALIS Y Q G+P EA+++F ++  SK  +PDE  L   
Sbjct: 279 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL--- 335

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
                                +  M L+  H+  +L+DM  KCG++ +A  +F ++  +D
Sbjct: 336 ---------------------KQGMKLN-CHLTTSLIDMYCKCGDLQKALMVFHSVERKD 373

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           V  + +MI GL++HGHG+ A++LF +M  + + P+ V FT +L ACSHVGLVE+G  FF 
Sbjct: 374 VFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN 433

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+ VY                               MP+ P AS WGALLGAC ++ ++
Sbjct: 434 QMELVYG-----------------------------KMPMAPAASVWGALLGACTIHENV 464

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            L E   ++L ELEP N G+YVLLSNIYA A +W  V  +R  M++ GL+K PGCSS+
Sbjct: 465 VLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 522


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 319/559 (57%), Gaps = 40/559 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+H+I+  L  D  L++  I      +T L  +  VFN+I  P   +WN +++G SQ+
Sbjct: 35  ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQS 94

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              +E   ++ R+  +    +  T   + KAC+ V  +  G  IH   ++ G +  +FV 
Sbjct: 95  DHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVS 154

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----- 229
            +LI +Y    ++  A+K+FD M +R++VSW  +I GY+      E   +FD M      
Sbjct: 155 NALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIK 214

Query: 230 -----------------------------ERSNVSWNALIGG-LVKIGDLRS----ARQL 255
                                        + +N+  +  +G  L+ +   RS    A+ +
Sbjct: 215 ADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGV 274

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
           FD M ERN+VS+  ++ G+AKVG++T+AR LF+  P RDV++W+++I+GY+Q  Q  +AV
Sbjct: 275 FDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAV 334

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           K+F +M +  V+PD+  + S++SAC+ +G LD+  W   +  R H   +  +V  +L+DM
Sbjct: 335 KLFQEMMAAKVKPDKVTVASVLSACAHLGKLDV-GWAVHHYIRRHGVQADIYVGNSLIDM 393

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
             KCG +++A E+F  M ++D VS+ S+I GL+++G    A+ LF +ML EG+ P    F
Sbjct: 394 YCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTF 453

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             +L AC+H GLV  G  +FE+M++V+ +VP+ +HY C+VDLL R+G++  AYE +  MP
Sbjct: 454 VGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMP 513

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           + P    W  LL ACKL+ ++ L E+   RL EL+P ++G+YVLLSN YA  DRW D   
Sbjct: 514 IVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMK 573

Query: 556 VRSKMKERGLRKIPGCSSL 574
           +R  M++  ++K  G SS+
Sbjct: 574 MRELMEDSDVQKPSGSSSI 592


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 299/535 (55%), Gaps = 35/535 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           ++L+ KC       Q+H+ I K GL  D  +    +  C  +++  L Y+  +F+   NP
Sbjct: 6   VSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNP 65

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           +TF+ NTL++  S +   +     F++L R+  + PD +TF   +KA ++   +R G  +
Sbjct: 66  DTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQL 125

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H+   R G D  +FVGT+LI +Y                               A  GD 
Sbjct: 126 HSQAFRHGFDAHIFVGTTLISMY-------------------------------AECGDS 154

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             A+ VFD M E + V+WNA++    + GD+  A+ +F  MP RN+ S+  M+ GYAK G
Sbjct: 155 GSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAG 214

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++  AR +F   P RD V+WS +I G+A NG  DEA   F ++  + ++ +E  L  ++S
Sbjct: 215 ELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLS 274

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDV 397
           AC+Q G  +    +  ++ ++   L    V  AL+D  +KCGN+  A  +F+ MP  R +
Sbjct: 275 ACAQAGAFEFGKILHGFVEKAGF-LYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSI 333

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ S+I GL++HG G +A+ LF  M   G+ PD + F  +L ACSH GLVE+G   F  
Sbjct: 334 VSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSK 393

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+N+Y I P+ EHY CMVDL GR   L+ AYE +  MPV P+A  W  LLGAC ++ +IE
Sbjct: 394 MKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIE 453

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + ELV  RL E++P N+G +VLLSN+YA A +W DV  +R  M E  ++K PG S
Sbjct: 454 MAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWS 508


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 315/563 (55%), Gaps = 44/563 (7%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           + ++H++ I  GL   H  ++  +     L   L ++  VF++I  P TFLWN L++G +
Sbjct: 4   IKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLA 63

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           Q+    +    + +      VPD  TFP ++KAC+ + ++ EG  +H  + + G+  D+F
Sbjct: 64  QSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIF 123

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           V  SLI LY     +  AR VFDEM  ++VVSW ++I GY+      +   +F LM    
Sbjct: 124 VSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEG 183

Query: 233 ----NVSWNALIGGLVKIGD-----------------------------------LRSAR 253
                V+   ++    ++GD                                   L+SA 
Sbjct: 184 VKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAE 243

Query: 254 QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           ++F  M  RN+V+   MI  YAK  D+ SAR +F+  P +D+++WS++ISGY+Q     +
Sbjct: 244 KVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSD 303

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA--A 371
           A++IF  M    V+PD  ++ S++S+C+ +G LDL  WV  Y+ R+++   +A  I   +
Sbjct: 304 ALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNI---KADTIMENS 360

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+DM  KCG+   A ++F+ M  +D +S+ S+I GL+ +G  +++++LF  ML+EG  P+
Sbjct: 361 LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPN 420

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            V F  VL AC++  LVE+G   FE+M+ +Y++ P  +HY C+VDLLGR G L+ A   +
Sbjct: 421 GVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFI 480

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             MP++P    W  LLG+C  + D+ + E+V  +L ELEP N+G+Y LLSN YA+A RW 
Sbjct: 481 TEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWS 540

Query: 552 DVCLVRSKMKERGLRKIPGCSSL 574
           +   VR  M +  +RK PGCS++
Sbjct: 541 EAMNVRQCMADTDVRKSPGCSAV 563


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 317/555 (57%), Gaps = 23/555 (4%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS------------- 87
           L L+  CK    + Q+H+ IIK    +  + +   ISLC  + + L              
Sbjct: 30  LLLLSSCKSVREIKQIHASIIKANTTRSTTTLP-IISLCTKITSLLQQDVHLADSIQNLW 88

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYS-QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           Y++++ N       +++N +++  S  N+ F  +F+++ +++     PD YT P ++KAC
Sbjct: 89  YASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKAC 148

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S   +  E   IHA  I+ G+  ++FV  +L+  Y     I    KVFD+ P  +++SWT
Sbjct: 149 SQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWT 208

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSN-VSWNALIGGLVKIGDLRSARQLFDEMPER--- 262
            +I  Y+ +G   EA   F  M   ++ ++   ++    ++GD    +++   M      
Sbjct: 209 TLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFD 268

Query: 263 ---NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
              +V     ++D Y K G    AR LF   P +++V+W+++ISG A  G   EA+ +F 
Sbjct: 269 VHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFR 328

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M +  ++PD   LV ++++C+ +G+L+L  WV SY+ ++HM  +  +V  ALVDM AKC
Sbjct: 329 RMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMK-ADGYVANALVDMYAKC 387

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G++D+A  +F+ M  +DV SY +MI G ++HG   +A+++F  M   G+ PD V    VL
Sbjct: 388 GSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVL 447

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +ACSH GL+E+G R F+ M  +Y + P  EHY CMVDLLGR G +  A    N MP+ P 
Sbjct: 448 SACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPD 507

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           AS WG+LLGACK+++ +ELGE V  +L E+EP+  G+Y+L+SNIY++A+RW D    R  
Sbjct: 508 ASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKA 567

Query: 560 MKERGLRKIPGCSSL 574
           MK+  ++K PGCSS+
Sbjct: 568 MKQNNIKKTPGCSSI 582


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 330/575 (57%), Gaps = 53/575 (9%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--- 97
           L+L++ C     L Q+H+ +   GL  +      F++ C +L+TP   + A         
Sbjct: 39  LSLLESCASFRRLLQLHALLTVTGLAGNGFPAFGFLAFC-ALSTPPRLAHAAAILARASP 97

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA------CSHVLS 151
            PN ++  T+++G+ +         +F R++R+    D  TF   +KA        H  +
Sbjct: 98  GPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGT 157

Query: 152 VREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
              G AIH A ++ G V E V VG +L+  Y   K +  A KVFDEMPER+VVSWT ++ 
Sbjct: 158 PSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVD 217

Query: 211 GYASVGDLVEAKTVF-------DLMPE--------------------------------- 230
           GYA  G   EA  +F        + P                                  
Sbjct: 218 GYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVA 277

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           RS    NAL+    K G +R AR++FD M  ++V S+T+M++ YAK GD+ SA  LF+  
Sbjct: 278 RSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDM 337

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P R+VV+WS +I+ Y+Q  QP+EAV +F +M +  V P +  LVS++SAC+Q+G LDL  
Sbjct: 338 PRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGR 397

Query: 351 WV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
           W+ ++Y+  + + L+  ++  AL+DM AKCG++  A++LF+ M  R+VVS+ +MI   ++
Sbjct: 398 WIYENYIVSNKIGLT-VNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAV 456

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG   +A+ LF+++  E + PD++ F  +L +CSH GLV +G R+F+ M+  Y I P  E
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYACM+DLLG+ G L+ A+E+   MP+E   + WGALL AC+++ ++E+G  VA++L EL
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVEL 576

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           +P ++G YVL+S IYA+ ++W  V ++R  M++RG
Sbjct: 577 DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/482 (39%), Positives = 293/482 (60%), Gaps = 11/482 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   N+  WN +L  Y QN R  +   +F           K  + L+   C     
Sbjct: 164 IFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF---------ESKADWELISWNCMMGGY 214

Query: 152 VREGTAIHA-AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V+    + A  +     + D     ++I  Y +  E+  A+++F+E P R+V +WTAM+ 
Sbjct: 215 VKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVS 274

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           GY   G L EA+ VFD MPE+++VSWNA+I G V+   +  AR+LF+ MP +NV S+ TM
Sbjct: 275 GYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTM 334

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I GYA+ GD+  AR+ F+  P RD ++W+A+I+GYAQ+G  +EA+ +F +M     + + 
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 394

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
               S +S C+++  L+L   V   + ++ ++ S  +V  AL+ M  KCGN+D A  +FE
Sbjct: 395 STFTSTLSTCAEIAALELGKQVHGRVVKAGLE-SGCYVGNALLVMYCKCGNIDDAYIVFE 453

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            +  ++VVS+ +MI G + HG G++A+ LF+ M   G+ PD+V    VL+ACSH GLV+ 
Sbjct: 454 GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDK 513

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F +M   Y I  + +HY CM+DLLGR G L  A  L+ +MP EP A+ WGALLGA 
Sbjct: 514 GTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGAS 573

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ + ELGE  A  +FE+EP N+G YVLLSN+YA + RW DV  +R +M++RG++K+PG
Sbjct: 574 RIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPG 633

Query: 571 CS 572
            S
Sbjct: 634 YS 635



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 185/370 (50%), Gaps = 37/370 (10%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +FN +   ++  WN ++ G   N +F     +F ++       D  ++ ++I  C    +
Sbjct: 71  LFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM----PTRDLVSWNVMISGCVRYRN 126

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +R    +   +     + DV    +++  Y +   +  A+++FDEMP +N +SW  M+  
Sbjct: 127 LRAARLLFDQM----PERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAA 182

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   G + +A+ +F+   +   +SWN ++GG VK   L  AR +FD MPER+ VS+ TMI
Sbjct: 183 YVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 242

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GYA+ G++  A+ LFE +P RDV  W+A++SGY QNG  DEA ++F  M  KN      
Sbjct: 243 SGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN------ 296

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA----------ALVDMNAKCGN 381
                        ++  +  +  Y+    MD +R    A           ++   A+ G+
Sbjct: 297 -------------SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGD 343

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           + +A   F+ MP RD +S+ ++I G +  G+G +A+ LF  M  +G   +   FT  L+ 
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 442 CSHVGLVEDG 451
           C+ +  +E G
Sbjct: 404 CAEIAALELG 413



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 168/347 (48%), Gaps = 59/347 (17%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
            D D+      I  + +  +   A ++F+ MP R+ +SW AMI G  S      A+ +F+
Sbjct: 45  TDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFE 104

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            MP R  VSWN +I G V+  +LR+AR LFD+MPER+VVS+  M+ GYA+ G +  A+ +
Sbjct: 105 KMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEI 164

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-----DMCSKNV--------------- 326
           F+  P ++ ++W+ +++ Y QNG+ ++A ++F      ++ S N                
Sbjct: 165 FDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDAR 224

Query: 327 -------QPDEFILVSLMSACSQVGNL-------------DLSNW---VDSYLSRSHMDL 363
                  + DE    +++S  +Q G L             D+  W   V  Y+    +D 
Sbjct: 225 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 284

Query: 364 SRAHVIAALVDMNA-----------KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
           +R  V   + + N+           +C  MD+A ELFE MP ++V S+ +MI G + +G 
Sbjct: 285 AR-RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGD 343

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
             QA + FDRM       D +++  ++   +  G  E+    F  M+
Sbjct: 344 IAQARNFFDRMPQR----DSISWAAIIAGYAQSGYGEEALHLFVEMK 386



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 56/367 (15%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  VF+ +   N+  WN ++ GY Q  R  +   +F      EA+P           
Sbjct: 282 LDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF------EAMP----------- 324

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C +V S             W          ++I  Y +  +I+ AR  FD MP+R+ +SW
Sbjct: 325 CQNVSS-------------W---------NTMITGYAQNGDIAQARNFFDRMPQRDSISW 362

Query: 206 TAMIVGYASVGDLVEAKTVFDLMP---ERSNVS-WNALIGGLVKIGDLRSARQLFDEMPE 261
            A+I GYA  G   EA  +F  M    ER N S + + +    +I  L   +Q+   + +
Sbjct: 363 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422

Query: 262 RNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
             + S       ++  Y K G++  A  +FE   +++VV+W+ +I+GYA++G   EA+ +
Sbjct: 423 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALML 482

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M    + PD+  +V ++SACS  G +D        +++ +   + +     ++D+  
Sbjct: 483 FESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLG 542

Query: 378 KCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH---GRQAVSLFDRMLSEGLTPDEV 433
           + G +D A  L + MP   D  ++ +++    IHG+   G +A  +   M      PD  
Sbjct: 543 RAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNS 597

Query: 434 AFTIVLT 440
              ++L+
Sbjct: 598 GMYVLLS 604



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 148/345 (42%), Gaps = 56/345 (16%)

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           + KT   L  +   V WN  I   ++ G   SA +LF+ MP R+ +S+  MI G      
Sbjct: 36  QPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDK 95

Query: 280 MTSARSLFEAAPDRDVVAWS-------------------------------ALISGYAQN 308
              AR LFE  P RD+V+W+                               A++SGYAQN
Sbjct: 96  FYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQN 155

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL-SRAH 367
           G   EA +IF +M  KN          +++A  Q G ++ +  +  + S++  +L S   
Sbjct: 156 GYVKEAKEIFDEMPCKN----SISWNGMLAAYVQNGRIEDARRL--FESKADWELISWNC 209

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           ++   V  N     +  A  +F+ MP RD VS+ +MI G + +G   +A  LF+    E 
Sbjct: 210 MMGGYVKRN----RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFE----ES 261

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
              D   +T +++     G++++  R F+ M    ++      +  ++    +   +  A
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQA 316

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
            EL  +MP + + S+W  ++       DI      A   F+  PQ
Sbjct: 317 RELFEAMPCQ-NVSSWNTMITGYAQNGDIAQ----ARNFFDRMPQ 356



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 137/325 (42%), Gaps = 52/325 (16%)

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI----- 118
           G+ + +S+  + I   +     +  +  +F  +   N   WNT++ GY+QN         
Sbjct: 291 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 350

Query: 119 --------------------------EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
                                     E   +FV + R+    ++ TF   +  C+ + ++
Sbjct: 351 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 410

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  +H  V++ G++   +VG +L+ +Y K   I  A  VF+ + E+ VVSW  MI GY
Sbjct: 411 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 470

Query: 213 ASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER-----N 263
           A  G   EA  +F+ M +      +V+   ++      G +    + F  M +      N
Sbjct: 471 ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITAN 530

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQP---DEAVKIFS 319
              YT MID   + G +  A++L +  P + D   W AL+     +G     ++A K+  
Sbjct: 531 SKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIF 590

Query: 320 DMCSKNVQPDE---FILVSLMSACS 341
           +M     +PD    ++L+S + A S
Sbjct: 591 EM-----EPDNSGMYVLLSNLYAAS 610



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 9/187 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH  ++K GLE     V + + + +     +  +  VF  I       WNT++ GY+++
Sbjct: 415 QVHGRVVKAGLESG-CYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFV 173
               E   +F  + +   +PD  T   V+ ACSH   V +GT    ++ + +G+  +   
Sbjct: 474 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM-----IVGYASVGDLVEAKTVFDL 227
            T +IDL G+   +  A+ +   MP E +  +W A+     I G   +G+   AK +F++
Sbjct: 534 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKA-AKMIFEM 592

Query: 228 MPERSNV 234
            P+ S +
Sbjct: 593 EPDNSGM 599


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 325/574 (56%), Gaps = 41/574 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L +++      HL Q H+ ++  GL     L+   ++   S  +P   S A+       +
Sbjct: 6   LRILRTLGSPHHLRQAHARLVAAGLSASPRLLPALVAAAFSAHSPRHASAALRAAGPAAS 65

Query: 101 TFLWNTLLK--GYSQNSRFI--EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           +   NTL++    ++  R +  +    +  ++     P+ +TF  +++AC+ +   R   
Sbjct: 66  SVSHNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCR 125

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLY---GKRKEISCARKVFDEM---------------- 197
            +H  ++RWG   +VFV  +L+D+Y   G    ++ AR+VFDEM                
Sbjct: 126 CVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYM 185

Query: 198 ---------------PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
                          PERNVVSW  ++ G+A VGD+V A+TVFD MP R+ +SWN +I G
Sbjct: 186 SSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISG 245

Query: 243 LVKIGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
               GD+ +AR +FD M ++ +VVS+T M+  YAK+GD+ +A+ LF+  P +++V+W+A+
Sbjct: 246 YASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAM 305

Query: 302 ISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           I+GY  N +  EA++ F   M     +PDE  LVS++SAC+Q+G+++  NW+ S++ +S+
Sbjct: 306 ITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSN 365

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           + L+ A +  AL+DM AKCG++ RA  +F  M  R ++++ +MI G + +G  R+A+ ++
Sbjct: 366 VHLTIA-LGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVY 424

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           + M  EG+  D++ F   L AC H GL+++GW  F  M   Y I P  EHY C+VDLLGR
Sbjct: 425 NNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGR 484

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G+L+ A   + SMP+EP    W  LL +C  + + E  + V+ ++ ELEP N+   VL+
Sbjct: 485 AGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELEPFNSSYQVLV 544

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 545 SNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSI 578


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 318/564 (56%), Gaps = 41/564 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+ +C     L  VH+ II  GL      +   +SLC      L Y+  +F++I  PN F
Sbjct: 45  LLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQ-EGDLRYAHLLFDQIPQPNKF 103

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           ++N L++GYS ++  ++   +F +++    +P+++TFP V+KAC+      E   +HA  
Sbjct: 104 MYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQA 163

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I+ G+     V  +++  Y   + I  AR+VFD++ +R +VSW +MI GY+ +G   EA 
Sbjct: 164 IKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAI 223

Query: 223 TVFDLM---------------------------------------PERSNVSWNALIGGL 243
            +F  M                                        E  ++  NALI   
Sbjct: 224 LLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMY 283

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            K G L+ A+ +FD+M +++VVS+T+M++ YA  G + +A  +F   P ++VV+W+++I 
Sbjct: 284 AKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIIC 343

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
              Q GQ  EAV++F  MC   V PD+  LVS++S CS  G+L L      Y+  + + +
Sbjct: 344 CLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITV 403

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S   +  +L+DM AKCG +  A ++F  MP ++VVS+  +I  L++HG G +A+ +F  M
Sbjct: 404 S-VTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSM 462

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
            + GL PDE+ FT +L+ACSH GLV+ G  +F+ M + + I P  EHYACMVDLLGR G 
Sbjct: 463 QASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGF 522

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L  A  L+  MPV+P    WGALLGAC++Y ++E+ + +  +L EL   N+G YVLLSN+
Sbjct: 523 LGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNM 582

Query: 544 YATADRWLDVCLVRSKMKERGLRK 567
           Y+ + RW D+  +R  M + G++K
Sbjct: 583 YSESQRWDDMKKIRKIMDDSGIKK 606


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 309/539 (57%), Gaps = 39/539 (7%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPN 100
            L ++C+    + QVH+ ++ +G   D S +   I +    +    +++  VF+RI +P+
Sbjct: 13  ALWRRCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPD 72

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA------VPDKYTFPLVIKACSHVLSVRE 154
            F++NTL++G + +    +  +I+ R+ R  A       PDK TFP V++AC+ + +   
Sbjct: 73  RFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASET 132

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +HA V++ G + D FV  +LI ++                               A+
Sbjct: 133 GAQVHAHVVKAGCESDAFVRNALIGMH-------------------------------AT 161

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
            GDL  A  +FD       V+W+A+I G  + GD+ +AR+LFDE P +++VS+  MI  Y
Sbjct: 162 CGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAY 221

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           AK+GDM  AR LF+ APDRDVV+W+A+ISGY + G   +A+++F  M +   +PD   ++
Sbjct: 222 AKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTML 281

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMP 393
           SL+SAC+  G++D    +  +LS     +  + V+  AL+DM AKCG+M  A E+F  M 
Sbjct: 282 SLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQ 341

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
           +++V ++ S+I GL++HGH  +A+ +F +ML   + PDE+ F  VL ACSH G+V+ G  
Sbjct: 342 DKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHE 401

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           +F  MQ  Y I P+ +HY CMVD+L R G LK A+E + +M +EP+   W  LLGAC+++
Sbjct: 402 YFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIH 461

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++EL E     L +     +G +VLLSNIYA+   WL    +R  M + G+ K  GC+
Sbjct: 462 GELELAEHANQELLKARSDASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCA 520


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/527 (36%), Positives = 311/527 (59%), Gaps = 38/527 (7%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFI-----SLCHSLATPL--SYSTAVFNRIVNPNTFLWN 105
           L Q+H+ +I  G   + + +   +     SL    ATP   +Y+  +F +I  P+TF++N
Sbjct: 18  LKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYN 77

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
            +++G SQ+   +   +++  + R     D YTFP V+KAC+ +  V  G+A+H  V+R 
Sbjct: 78  VMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRL 137

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G   +  V  +L+                               V +A  GDL  A ++F
Sbjct: 138 GFGSNAVVRNTLL-------------------------------VFHAKCGDLNVATSLF 166

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           D   +   V+W++LI G  + GDL+ AR+LF+EMPER++VS+  MI GY K G+M SAR 
Sbjct: 167 DDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARM 226

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LF+ AP +DVV+W+A+I+GY   G   +A+++F++MC   V PDE  L+SL+SAC+ +G+
Sbjct: 227 LFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGD 286

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+    V + +    M      +  AL+DM AKCGN+  + ++F ++ ++DV+S+ S+I 
Sbjct: 287 LENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIV 346

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G+++HGHG++++SLF  M    + P+E+ F  VL ACSH G +++G+++F+ M + Y I 
Sbjct: 347 GMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIE 406

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+  H  CMVD+LGR G LK A + ++SM +EP+A  W  LL ACK++ D+EL ++   +
Sbjct: 407 PNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEK 466

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LF +   ++G YVL+SN+YA+   W     VR  M + G+ KI G S
Sbjct: 467 LFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSS 513


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 317/552 (57%), Gaps = 36/552 (6%)

Query: 24  SRSAPINFPK-PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           S S P+  P  PS   + L  IK C     LH + + +IK    QD  LV  FIS   +L
Sbjct: 122 SISMPLQPPSCPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFAL 181

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPL 141
            + + Y    F ++ NPN F++N ++KG+            +V ++ E  V P  YTF  
Sbjct: 182 NS-VHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSS 240

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           ++KAC+ + +V  G  +H  + + G +  +FV T+L+D Y K + +S             
Sbjct: 241 LVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILS------------- 287

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
                             EA+ VFD M ER   +W A++  L ++GD+ SAR+LF+EMPE
Sbjct: 288 ------------------EARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPE 329

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           RN  ++ TMIDGYA++G++ SA  LF   P +D+++W+ +I+ Y+QN Q  +A+ I+S+M
Sbjct: 330 RNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEM 389

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
               + PDE  + ++ SAC+ +G L+L   +  Y+    ++L   ++ +ALVDM AKCG+
Sbjct: 390 RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLD-VYIGSALVDMYAKCGS 448

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +D +  +F  + ++++  + ++I+GL++HG+  +A+ +F  M  E + P+ V F  +L+A
Sbjct: 449 LDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSA 508

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+H GLV++G   F +M   Y I P   HY CMVD+L ++G+L  A EL+ SM  EP++ 
Sbjct: 509 CTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSI 568

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALL  CKL+ + E+ E    +L  LEP N+G Y LL ++YA    W++V  +RS MK
Sbjct: 569 IWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMK 628

Query: 562 ERGL-RKIPGCS 572
           E+G+ +K PG S
Sbjct: 629 EKGVEKKYPGSS 640


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/485 (39%), Positives = 294/485 (60%), Gaps = 11/485 (2%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +F+ +   N+  WN +L  Y QN R  +   +F           K  + L+   C  
Sbjct: 80  AKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF---------ESKADWELISWNCMM 130

Query: 149 VLSVREGTAIHA-AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
              V+    + A  +     + D     ++I  Y +  E+  A+++F+E P R+V +WTA
Sbjct: 131 GGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 190

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+ GY   G L EA+ VFD MPE+++VSWNA+I G V+   +  AR+LF+ MP +NV S+
Sbjct: 191 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 250

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            TMI GYA+ GD+  AR+ F+  P RD ++W+A+I+GYAQ+G  +EA+ +F +M     +
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +     S +S C+++  L+L   V   + ++ ++ S  +V  AL+ M  KCGN+D A  
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE-SGCYVGNALLVMYCKCGNIDDAYI 369

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +FE +  ++VVS+ +MI G + HG G++A+ LF+ M   G+ PD+V    VL+ACSH GL
Sbjct: 370 VFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 429

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V+ G  +F +M   Y I  + +HY CM+DLLGR G L  A  L+ +MP EP A+ WGALL
Sbjct: 430 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 489

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GA +++ + ELGE  A  +FE+EP N+G YVLLSN+YA + RW DV  +R +M++RG++K
Sbjct: 490 GASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKK 549

Query: 568 IPGCS 572
           +PG S
Sbjct: 550 VPGYS 554



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 160/316 (50%), Gaps = 62/316 (19%)

Query: 179 DLYG--KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           DL G  + + +  AR +FD+MPER+VVSW AM+ GYA  G + EAK +FD MP ++++SW
Sbjct: 36  DLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISW 95

Query: 237 NALI-------------------------------GGLVKIGDLRSARQLFDEMPERNVV 265
           N ++                               GG VK   L  AR +FD MPER+ V
Sbjct: 96  NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 155

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+ TMI GYA+ G++  A+ LFE +P RDV  W+A++SGY QNG  DEA ++F  M  KN
Sbjct: 156 SWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 215

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA----------ALVDM 375
                              ++  +  +  Y+    MD +R    A           ++  
Sbjct: 216 -------------------SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 256

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            A+ G++ +A   F+ MP RD +S+ ++I G +  G+G +A+ LF  M  +G   +   F
Sbjct: 257 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 316

Query: 436 TIVLTACSHVGLVEDG 451
           T  L+ C+ +  +E G
Sbjct: 317 TSTLSTCAEIAALELG 332



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 56/367 (15%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  VF+ +   N+  WN ++ GY Q  R  +   +F      EA+P           
Sbjct: 201 LDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF------EAMP----------- 243

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C +V S             W          ++I  Y +  +I+ AR  FD MP+R+ +SW
Sbjct: 244 CQNVSS-------------W---------NTMITGYAQNGDIAQARNFFDRMPQRDSISW 281

Query: 206 TAMIVGYASVGDLVEAKTVFDLMP---ERSNVS-WNALIGGLVKIGDLRSARQLFDEMPE 261
            A+I GYA  G   EA  +F  M    ER N S + + +    +I  L   +Q+   + +
Sbjct: 282 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 341

Query: 262 RNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
             + S       ++  Y K G++  A  +FE   +++VV+W+ +I+GYA++G   EA+ +
Sbjct: 342 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALML 401

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M    + PD+  +V ++SACS  G +D        +++ +   + +     ++D+  
Sbjct: 402 FESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLG 461

Query: 378 KCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH---GRQAVSLFDRMLSEGLTPDEV 433
           + G +D A  L + MP   D  ++ +++    IHG+   G +A  +   M      PD  
Sbjct: 462 RAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNS 516

Query: 434 AFTIVLT 440
              ++L+
Sbjct: 517 GMYVLLS 523



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 137/325 (42%), Gaps = 52/325 (16%)

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI----- 118
           G+ + +S+  + I   +     +  +  +F  +   N   WNT++ GY+QN         
Sbjct: 210 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 269

Query: 119 --------------------------EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
                                     E   +FV + R+    ++ TF   +  C+ + ++
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 329

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  +H  V++ G++   +VG +L+ +Y K   I  A  VF+ + E+ VVSW  MI GY
Sbjct: 330 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 389

Query: 213 ASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER-----N 263
           A  G   EA  +F+ M +      +V+   ++      G +    + F  M +      N
Sbjct: 390 ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITAN 449

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQP---DEAVKIFS 319
              YT MID   + G +  A++L +  P + D   W AL+     +G     ++A K+  
Sbjct: 450 SKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIF 509

Query: 320 DMCSKNVQPDE---FILVSLMSACS 341
           +M     +PD    ++L+S + A S
Sbjct: 510 EM-----EPDNSGMYVLLSNLYAAS 529



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 15/251 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH  ++K GLE     V + + + +     +  +  VF  I       WNT++ GY+++
Sbjct: 334 QVHGRVVKAGLESG-CYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 392

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFV 173
               E   +F  + +   +PD  T   V+ ACSH   V +GT    ++ + +G+  +   
Sbjct: 393 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM-----IVGYASVGDLVEAKTVFDL 227
            T +IDL G+   +  A+ +   MP E +  +W A+     I G   +G+   AK +F++
Sbjct: 453 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKA-AKMIFEM 511

Query: 228 MPERSN--VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
            P+ S   V  + L     + GD+   R    +   + V  Y + ++   K+   T   S
Sbjct: 512 EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGY-SWVEVQNKIHTFTVGDS 570

Query: 286 LFEAAPDRDVV 296
           +    P+RD +
Sbjct: 571 VH---PERDRI 578


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 324/564 (57%), Gaps = 18/564 (3%)

Query: 20  LPNCSRSAPINFPK-PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           LPN S ++   FP+ P  L+     +++CK    L QVH+H++K     D  ++   +  
Sbjct: 8   LPNISLTSITQFPENPKSLI-----LQQCKTPKDLQQVHAHLLKTRRLLD-PIITEAVLE 61

Query: 79  CHSLATP--LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
             +L  P  + Y+ ++FN I  P +  +N +++G +          +F ++  +    DK
Sbjct: 62  SAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDK 121

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
           +TF  V+KACS + ++REG  +HA +++ G   + FV  +LI +Y    +I  AR VFD 
Sbjct: 122 FTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDG 181

Query: 197 MPERNVVSWTAMIVGYASVGDLVEA----KTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           MPER++V+W +M+ GY   G   E     + + +L  E  +V+  +++    ++ +L   
Sbjct: 182 MPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG 241

Query: 253 RQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
             + + +      RN    T++ID YAK G + +AR LF+    RDVVAWSA+ISGYAQ 
Sbjct: 242 ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
            +  EA+ +F +M   NV P+E  +VS++ +C+ +G  +   WV  Y+ +  M L+   +
Sbjct: 302 DRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLT-VTL 360

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
              L+D  AKCG +DR+ E+F+ M  ++V ++ ++I+GL+ +G G+ A+  F  ML   +
Sbjct: 361 GTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDV 420

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P++V F  VL+ACSH  LV+ G   F +M+  + I P  EHY CMVD+LGR G L+ AY
Sbjct: 421 KPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAY 480

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           + +++MP  P+A  W  LL +C+ + +IE+ E     +  LEP ++G Y+LLSN YA   
Sbjct: 481 QFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVG 540

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           R  D   VRS +KE+ ++KIPGCS
Sbjct: 541 RVEDAIRVRSLIKEKEIKKIPGCS 564


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 325/562 (57%), Gaps = 41/562 (7%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           L  +H+ II  GL  +   +   IS C    A  L Y+  +F++I  PN F++N+L++GY
Sbjct: 4   LKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGY 63

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           S +   I+   +F R+I     P+++T P V+KAC    +  E   +H   I+ G+   V
Sbjct: 64  SNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLV 123

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           FV  +LI +Y     I CARK+FD++ ++ +VSW +MI GYA +G+  EA  +F  M E 
Sbjct: 124 FVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREW 183

Query: 232 SN---------------------------------------VSWNALIGGLVKIGDLRSA 252
                                                    +  NAL+    K G+L SA
Sbjct: 184 GMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSA 243

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + +FD   E+NVVS+T+MI  YA+ G +  AR +F+  P ++VV+W+++IS Y + GQ  
Sbjct: 244 QAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYR 303

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F+ M +  V PDE  LVS+++ACSQ+G+L +   + +Y+  S+       +  +L
Sbjct: 304 EALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYI-LSNKGAYGVTLYNSL 362

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           +DM AKCG +  A ++F  MP +++VS+  +I  L++HG G +A+ LF+ M ++G  PDE
Sbjct: 363 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 422

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           +  T +L+ACSH GLV+ G  +F+ M  +Y +    EHYACMVDLLGR G L  A EL+ 
Sbjct: 423 ITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIG 482

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
            MP++P    WGALLGAC+++ ++E+G+ +  +L ELEP + G YVL+SNIY  A RW D
Sbjct: 483 RMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWED 542

Query: 553 VCLVRSKMKERGLRKIPGCSSL 574
           V  +R  M +RG++K    SS+
Sbjct: 543 VKKIRKLMIDRGIKKGRAISSI 564



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 63/451 (13%)

Query: 23  CSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQ----DHSLVAHF 75
           CS  +P  F  P  L       K C  ++   +   VH   IK G+       ++L+A +
Sbjct: 81  CSGLSPNEFTLPFVL-------KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVY 133

Query: 76  I--SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
           +   L H        +  +F+ I +     WN+++ GY+    + E F +F ++      
Sbjct: 134 VVCGLIHC-------ARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGME 186

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PD +TF  ++  CS    +  G  +H  +   GV  D+ V  +L+D+Y K   +  A+ +
Sbjct: 187 PDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAI 246

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR 253
           FD   E+NVVSWT+MI  YA  G +  A+ +FD MP ++ VSWN++I   ++ G  R A 
Sbjct: 247 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 306

Query: 254 QLFDEMPERNVVS---------------------------------------YTTMIDGY 274
            LF++M    VV                                        Y ++ID Y
Sbjct: 307 DLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMY 366

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           AK G + +A  +F   P +++V+W+ +I   A +G   EA+K+F +M +    PDE  L 
Sbjct: 367 AKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLT 426

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
            L+SACS  G +D+  +    +   +         A +VD+  + G +  A EL   MP 
Sbjct: 427 GLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPM 486

Query: 395 R-DVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
           + DVV + +++    IHG+      +  ++L
Sbjct: 487 KPDVVVWGALLGACRIHGNVEIGKQILKQLL 517


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 317/552 (57%), Gaps = 36/552 (6%)

Query: 24  SRSAPINFP-KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           S S P+  P +PS   + L  IK C     LH + + +IK    QD  LV  FIS   +L
Sbjct: 25  SISMPLQPPSRPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFAL 84

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPL 141
            + + Y    F ++ NPN F++N ++KG+            +V ++ E  V P  YTF  
Sbjct: 85  NS-VHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSS 143

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           ++KAC+ + +V  G  +H  + + G +  +FV T+L+D Y K + +S             
Sbjct: 144 LVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILS------------- 190

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
                             EA+ VFD M ER   +W A++  L ++GD+ SAR+LF+EMPE
Sbjct: 191 ------------------EARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPE 232

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           RN  ++ TMIDGY ++G++ SA  LF   P +D+++W+ +I+ Y+QN Q  +A+ I+S+M
Sbjct: 233 RNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEM 292

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
               + PDE  + ++ SAC+ +G L+L   +  Y+    ++L   ++ +ALVDM AKCG+
Sbjct: 293 RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLD-VYIGSALVDMYAKCGS 351

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +D +  +F  + ++++  + ++I+GL++HG+  +A+ +F  M  E + P+ V F  +L+A
Sbjct: 352 LDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSA 411

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+H GLV++G   F +M   Y I P   HY CMVD+L ++G+L  A EL+ SM  EP++ 
Sbjct: 412 CTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSI 471

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALL  CKL+ + E+ E    +L  LEP N+G Y LL ++YA    W++V  +RS MK
Sbjct: 472 IWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMK 531

Query: 562 ERGL-RKIPGCS 572
           E+G+ +K PG S
Sbjct: 532 EKGVEKKYPGSS 543


>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
 gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
          Length = 530

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/439 (41%), Positives = 282/439 (64%), Gaps = 2/439 (0%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHA-AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           D +T P  + A + +  +  G ++HA A     +   + V  +L+DLY K +E S A   
Sbjct: 81  DHFTLPFALNAAASLRLLPLGASLHAVAFRLGLLPLRLPVANALVDLYAKCEEFSAAHAA 140

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR 253
             ++P  + VS+ +++  +A    +  A+++F  M  R+ VSWNA++   V  GDL SAR
Sbjct: 141 LADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYVSAGDLVSAR 200

Query: 254 QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           ++FDEMP R+  S++ +I GY K G + +AR LF+  P +++VA +A+I+GYAQ GQP  
Sbjct: 201 RVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQPKA 260

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A+ +F D+ +  ++PD   +V ++SA SQ+G+ +L+ WV +Y+ R  ++     V+ ALV
Sbjct: 261 ALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIE-RNVKVLTALV 319

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           DM+AKCGN+++A   F  +P  D   Y ++I GL+ HGH + A+S+F+RM  + + PD +
Sbjct: 320 DMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDPI 379

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
            F  VLTACSH GLV+ G  ++EAM   Y IV   +HYAC++D+LGR G ++ A+E++ +
Sbjct: 380 TFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIEEAFEMVQT 439

Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553
           MP+ PH  A GALL ACK Y ++E+ E+VAN+LFELEP N G+Y+LLSNIYA  + W + 
Sbjct: 440 MPMGPHPGALGALLSACKTYENVEIAEIVANKLFELEPWNTGNYILLSNIYAGKELWEEA 499

Query: 554 CLVRSKMKERGLRKIPGCS 572
             VRS M+ +   K PG +
Sbjct: 500 ERVRSLMRTKLPFKNPGST 518



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++ + N      ++ GY+Q  +      +F  L      PD  T   VI A S + S
Sbjct: 233 LFDKMPSKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQIGS 292

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                 + A V R  ++ +V V T+L+D++ K   I  A   F E+P+ +   +TA+I G
Sbjct: 293 TELAGWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISG 352

Query: 212 YASVGDLVEAKTVFDLM 228
            A+ G    A +VF+ M
Sbjct: 353 LATHGHEKLALSVFERM 369



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 93/209 (44%), Gaps = 15/209 (7%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           V +++ +K +E++  ++   + + H+    +  + + F  I  P+ + +  L+ G + + 
Sbjct: 299 VGAYVDRKKIERNVKVLTALVDM-HAKCGNIEQALSAFREIPQPDAYPYTALISGLATHG 357

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
                 ++F R+  +   PD  TF  V+ ACSH   V +G     A++R +G+       
Sbjct: 358 HEKLALSVFERMQVQAVKPDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHY 417

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE-----AKTVFDLMP 229
             +ID+ G+   I  A ++   MP          ++      + VE     A  +F+L P
Sbjct: 418 ACVIDMLGRAGRIEEAFEMVQTMPMGPHPGALGALLSACKTYENVEIAEIVANKLFELEP 477

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDE 258
                 WN   G  + + ++ + ++L++E
Sbjct: 478 ------WN--TGNYILLSNIYAGKELWEE 498


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 311/538 (57%), Gaps = 19/538 (3%)

Query: 49  LQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLL 108
           L  HL QV+  +I  GL +   L+  FI+ C      ++Y+   F  +  P+  LWN ++
Sbjct: 14  LLKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFG-DVNYAHKAFREVSEPDILLWNAII 72

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
           KGY+Q +       +++ +   +  P+ +TF  V+KAC        G  IH    ++G  
Sbjct: 73  KGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFG 132

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            +VFV  SL+ +Y K  +IS AR VFD++ +R VVSWT++I GY   GD +EA  VF  M
Sbjct: 133 SNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM 192

Query: 229 PERSNVS--WNALIG---GLVKIGDLRSARQLFD-------EMPERNVVSYTTMIDGYAK 276
             + NV   W AL+        + DL   + +         E     V+S TTM   YAK
Sbjct: 193 -RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM---YAK 248

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G +  AR  F      +++ W+A+ISGYA NG  +EA+K+F +M +KN++ D   + S 
Sbjct: 249 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 308

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + A +QVG+L+L+ W+D Y+S+S        V   L+DM AKCG++  A  +F+ + ++D
Sbjct: 309 VLASAQVGSLELARWLDGYISKSEYR-DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKD 367

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VV +  MI G  +HGHG++A+ L++ M   G+ P++  F  +LTAC + GLV++GW  F 
Sbjct: 368 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH 427

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M + + I P  +HY+C+VDLLGR G+L  AY+ + SMP++P  S WGALL ACK++  +
Sbjct: 428 LMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKV 486

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            LGE+ A +LF L+P N G YV LSN+YA+A  W  V  VR  M ++GL K  G SS+
Sbjct: 487 RLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 544


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 315/563 (55%), Gaps = 44/563 (7%)

Query: 53   LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
            + ++H++ I  GL   H  ++  +     L   L ++  VF++I  P TFLWN L++G +
Sbjct: 469  IKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLA 528

Query: 113  QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
            Q+    +    + +      VPD  TFP ++KAC+ + ++ EG  +H  + + G+  D+F
Sbjct: 529  QSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIF 588

Query: 173  VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
            V  SLI LY     +  AR VFDEM  ++VVSW ++I GY+      +   +F LM    
Sbjct: 589  VSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEG 648

Query: 233  ----NVSWNALIGGLVKIGD-----------------------------------LRSAR 253
                 V+   ++    ++GD                                   L+SA 
Sbjct: 649  VKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAE 708

Query: 254  QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            ++F  M  RN+V+   MI  YAK  D+ SAR +F+  P +D+++WS++ISGY+Q     +
Sbjct: 709  KVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSD 768

Query: 314  AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA--A 371
            A++IF  M    V+PD  ++ S++S+C+ +G LDL  WV  Y+ R+++   +A  I   +
Sbjct: 769  ALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNI---KADTIMENS 825

Query: 372  LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
            L+DM  KCG+   A ++F+ M  +D +S+ S+I GL+ +G  +++++LF  ML+EG  P+
Sbjct: 826  LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPN 885

Query: 432  EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
             V F  VL AC++  LVE+G   FE+M+ +Y++ P  +HY C+VDLLGR G L+ A   +
Sbjct: 886  GVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFI 945

Query: 492  NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
              MP++P    W  LLG+C  + D+ + E+V  +L ELEP N+G+Y LLSN YA+A RW 
Sbjct: 946  TEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWS 1005

Query: 552  DVCLVRSKMKERGLRKIPGCSSL 574
            +   VR  M +  +RK PGCS++
Sbjct: 1006 EAMNVRQCMADTDVRKSPGCSAV 1028



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 192/327 (58%), Gaps = 2/327 (0%)

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           AL+   +  G L  +R  F+EMP +N VS+  +I G+A  G++  AR LFE  P R+VV+
Sbjct: 129 ALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVS 188

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           WS +I GY +  +P EAV +F  M ++ + P E  +++++ A S VG + +   +  Y  
Sbjct: 189 WSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCE 248

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELF-ETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           +  + +    V  +L+D+ AK G++  +  +F E +  R++VS+ S+I G ++HG   +A
Sbjct: 249 KEGL-VWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKA 307

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           V LF  M   G+ P+ + F  VL ACSH GLVE G  FF++M   Y I P  +H+ C++D
Sbjct: 308 VELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIID 367

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           +LGR G L+ A +++   PVE +A+ W  LLG C  Y ++E+GE    ++  LE +  G 
Sbjct: 368 MLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGD 427

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKER 563
           +V+LSN+     R+ D  +VR  + +R
Sbjct: 428 FVVLSNMLTELRRFSDAEIVRKLVDQR 454



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 164/343 (47%), Gaps = 47/343 (13%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+R   P    W+ LLK YS      +   +F R  R  A  D Y F   +KAC+ +  
Sbjct: 50  VFDRRPTP----WHALLKAYSHGPHPQDALQLF-RHARWHAADDTYAFTFALKACAGLGW 104

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
            R    +H  V+R G +   +V T+L+++Y     ++ +R  F+EMP +N VSW  +I G
Sbjct: 105 PRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITG 164

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-------PERNV 264
           +A  G++  A+ +F+ MP R+ VSW+ +I G  +      A  LF  M        E  V
Sbjct: 165 FAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITV 224

Query: 265 VSY--------------------------------TTMIDGYAKVGDMTSARSLFEAAPD 292
           ++                                  ++ID YAK+G + ++  +F+   D
Sbjct: 225 LAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLD 284

Query: 293 -RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-N 350
            R++V+W+++ISG+A +G   +AV++F+DM    ++P+    +S++ ACS  G ++    
Sbjct: 285 RRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVA 344

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +  S +   +++    H    ++DM  + G +  A ++    P
Sbjct: 345 FFKSMIYEYNINPDVKH-FGCIIDMLGRAGRLREAEQIIRDFP 386



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 119/534 (22%), Positives = 227/534 (42%), Gaps = 78/534 (14%)

Query: 55  QVHSHIIKKGLEQD---HSLVAHFISLCHSLATP-------------------------- 85
           Q+H  +++KG E     H+ + +   LC  LA                            
Sbjct: 110 QLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWG 169

Query: 86  -LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            + Y+  +F R+   N   W+ ++ GY++  R +E   +F R++ E   P + T   V+ 
Sbjct: 170 EVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVP 229

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNVV 203
           A S+V  +  G A+H    + G+  DV VG SLIDLY K   I  + +VFDEM + RN+V
Sbjct: 230 ALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLV 289

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI----------GGLVKIGDLRSAR 253
           SWT++I G+A  G  V+A  +F  M  R+ +  N +           GGLV+ G      
Sbjct: 290 SWTSIISGFAMHGLSVKAVELFADM-RRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKS 348

Query: 254 QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD 312
            +++     +V  +  +ID   + G +  A  +    P + +   W  L+   ++ G+ +
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVE 408

Query: 313 EAVKIFSDMCS--KNVQPDEFILVSLMSACSQVGN-------LDLSNWVDSYLSRSHMD- 362
              +    + +  +    D  +L ++++   +  +       +D  N V S+ +   M+ 
Sbjct: 409 MGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEA 468

Query: 363 LSRAH---VIAALVDMNAKCGNMDR-----------AAELFETMPNRDVVSYCSMIKGLS 408
           + R H   +++ L + +     + R           A ++F+ +       +  +I+GL+
Sbjct: 469 IKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLA 528

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN---VYAIV 465
                  A++ + +    G+ PD + F  +L AC+ +  + +G    E M N      ++
Sbjct: 529 QSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEG----EQMHNHITKLGLL 584

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL---GACKLYSDI 516
                   ++ L    G+L  A  + + M V+   S W +L+     C  + DI
Sbjct: 585 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVS-WNSLICGYSQCNRFKDI 637


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 310/535 (57%), Gaps = 19/535 (3%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           HL QV+  +I  GL +   L+  FI+ C      ++Y+   F  +  P+  LWN ++KGY
Sbjct: 2   HLDQVYVQLIVSGLHKCRFLMIKFINACLHFG-DVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           +Q +       +++ +   +  P+ +TF  V+KAC        G  IH    ++G   +V
Sbjct: 61  TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           FV  SL+ +Y K  +IS AR VFD++ +R VVSWT++I GY   GD +EA  VF  M  +
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM-RQ 179

Query: 232 SNVS--WNALIG---GLVKIGDLRSARQLFD-------EMPERNVVSYTTMIDGYAKVGD 279
            NV   W AL+        + DL   + +         E     V+S TTM   YAK G 
Sbjct: 180 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM---YAKRGL 236

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR  F      +++ W+A+ISGYA NG  +EA+K+F +M +KN++ D   + S + A
Sbjct: 237 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 296

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
            +QVG+L+L+ W+D Y+S+S        V   L+DM AKCG++  A  +F+ + ++DVV 
Sbjct: 297 SAQVGSLELARWLDGYISKSEYR-DDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVL 355

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           +  MI G  +HGHG++A+ L++ M   G+ P++  F  +LTAC + GLV++GW  F  M 
Sbjct: 356 WSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP 415

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           + + I P  +HY+C+VDLLGR G+L  AY+ + SMP++P  S WGALL ACK++  + LG
Sbjct: 416 D-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLG 474

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           E+ A +LF L+P N G YV LSN+YA+A  W  V  VR  M ++GL K  G SS+
Sbjct: 475 EIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 529


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/564 (37%), Positives = 326/564 (57%), Gaps = 47/564 (8%)

Query: 23  CSRSAPINFPKPSCL-----LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQ-DHSLVA 73
           C RS+P+     + L        + L+ +C  Q  + Q   + + II   +   D +++A
Sbjct: 2   CQRSSPLLVITLAVLHDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIA 61

Query: 74  -HFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLLKGYSQNSRFIEVFTIFV-RLIRE 130
             FI +  S    L +S  +FN  ++ PN F +N LLK +SQ++ +    + F  +L+  
Sbjct: 62  VKFIGVSSSHGN-LRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLP 120

Query: 131 EA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
            A  PD+YTF  V+KAC+ +  V EG  +H  V ++G + ++FV  SL+DLY K      
Sbjct: 121 NAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCI 180

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           A+K+FDEM  R+V                               VSWN LI G    G +
Sbjct: 181 AQKLFDEMVVRDV-------------------------------VSWNTLISGYCFSGMV 209

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             AR +FD M E+N+VS++TMI GYA+VG++  AR LFE  P R+VV+W+A+I+GYAQN 
Sbjct: 210 DKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNE 269

Query: 310 QPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           +  +A+++F  M  +  + P++  LVS++SAC+ +G LDL  W+  ++ R+ +++    +
Sbjct: 270 KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVG-LFL 328

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             AL DM AKCG +  A  +F  M  RDV+S+  +I GL+++G+  +A + F  M+ +GL
Sbjct: 329 GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL 388

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P++++F  +LTAC+H GLV+ G  +F+ M  VY I P  EHY C+VDLL R G L  A 
Sbjct: 389 EPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 448

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
            L+NSMP++P+   WGALLG C++Y D E GE V  R+ EL+  ++GS V L+N+YA+  
Sbjct: 449 SLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           R  D    R +M++    K PGCS
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCS 532


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/579 (34%), Positives = 322/579 (55%), Gaps = 46/579 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA-----TPLSYSTAVFNR 95
           L L+++C+   HL Q+H+H++  G     S+V   ++   +L+       L ++  +F+R
Sbjct: 7   LELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMFDR 66

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           + +P+ F +N+L++ YS +    E   +   ++R   +P+++T P V+KACS   +    
Sbjct: 67  VPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHA 126

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYAS 214
            A H   I+ G    VFVG +L+        +  +R++F EM P RNVVSW  MI G A 
Sbjct: 127 LATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQ 186

Query: 215 VGDLVEAKTVFDLMPERSNVS--------------------------------------- 235
            G+  EA  +F  M  +  ++                                       
Sbjct: 187 AGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLIL 246

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NAL+    K GDL  A + FD MP +NVVS+T+M+   AK G + +AR  FE  P+R++
Sbjct: 247 GNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNI 306

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           ++W+A+IS Y Q G+  E + +++ M S  + PDE  L  ++S   Q G+L     +  Y
Sbjct: 307 ISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCY 366

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           +  S  D     V+ +L+DM A+CG +D +  LF  MPN++ +S+  +I  L++HG  ++
Sbjct: 367 IQDSFSD-PGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQE 425

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           AV  F  M+S+  +PDE+ F  +L+ACSH GL+EDG  +F+AM+++Y + P  EHYACMV
Sbjct: 426 AVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMV 485

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR GHL  A +L+  MP++P    WGAL+GAC+++  +E+G+L   +L ELE  N G
Sbjct: 486 DLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGG 545

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            +VL+SN+     +W D+  +R  M++RG +K  G SS+
Sbjct: 546 LFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSI 584


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/529 (36%), Positives = 301/529 (56%), Gaps = 35/529 (6%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWN 105
           CK    L Q+H   IK G++ D   +   I  C  S++  L Y+  +      P+ F++N
Sbjct: 182 CKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFN 241

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           TL++GYS++        +FV ++R+  + PD ++F  V+KA ++  S+R G  +H   ++
Sbjct: 242 TLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALK 301

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G+D  +FV T+LI +YG   E  C                    VG+A        + V
Sbjct: 302 HGLDSHLFVATTLIGMYG---ECGC--------------------VGFA--------RKV 330

Query: 225 FDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           FD MP+ + V+WNA++    +  D+  AR++FD+M  RN  S+  M+ GY K G++  A+
Sbjct: 331 FDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAK 390

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F   P RD V+WS +I G++ NG  +E+   F ++    ++P+E  L  ++SACSQ G
Sbjct: 391 RIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSG 450

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PNRDVVSYCSM 403
             +    +  ++ +S        V  AL+DM ++CGN+  A  +FE M   R +VS+ SM
Sbjct: 451 AFEFGKTLHGFVEKSGYSWI-VSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSM 509

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I GL++HGHG +A+ +F+ M   G+ PDE++F  +L ACSH GL+++G  +F  M+ VY 
Sbjct: 510 IAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYH 569

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P+ EHY CMVDL GR+G L+ AY  +  MP+ P A  W  LLGAC  + +IEL E V 
Sbjct: 570 IEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVK 629

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            RL EL+P N+G  VLLSN+YATA +W DV  +R  M  + ++KI   S
Sbjct: 630 QRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWS 678


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 311/546 (56%), Gaps = 16/546 (2%)

Query: 36  CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           C+ S L  +K  KL       H  +++  L  D+ L++  +    + +    Y   VF++
Sbjct: 9   CIASGLKCLKHAKL------AHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHK 62

Query: 96  I-VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
              N NTFL+NT+++G     RF     ++  + +   VPD +TF  V+KAC+ +     
Sbjct: 63  TPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHL 122

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH+ V + G D DVFV T+++  Y K   +  A KVFD+M  +NVVSWT MI G   
Sbjct: 123 GVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIE 182

Query: 215 VGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVS 266
            G   EA  +F  + E            ++    ++GDL S R +   M E    RNV  
Sbjct: 183 FGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFV 242

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
            T+++D Y K G M  AR +F+   ++D+V WSA+I GYA NG P EA+++F +M   NV
Sbjct: 243 ATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNV 302

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           +PD + +V  +S+C+ +G L+L NW    ++     LS   +  +L+D  AKCG+M+ A 
Sbjct: 303 RPDCYAMVGALSSCASLGALELGNWAKGLMNYEEF-LSNPVLGTSLIDFYAKCGSMEEAL 361

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +++ M  +D V + ++I GL+++G    A  +F +M   G+ P+E  F  +L  C+H G
Sbjct: 362 GVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAG 421

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LV+DG  +F +M + +++ P+ EHY CMVDLL R G L  A+ L+  MP++ +   WG+L
Sbjct: 422 LVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSL 481

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LG C+L+ + +L E V  +L ELEP N+G YVLLSNIY+ + RW +   +RS + E+G++
Sbjct: 482 LGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQ 541

Query: 567 KIPGCS 572
           K+PG S
Sbjct: 542 KLPGYS 547


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/537 (35%), Positives = 325/537 (60%), Gaps = 5/537 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL--ATPLSYSTAVFNRIVN 98
           L+ ++ C+    L+Q+H  +IK  + ++   ++  I  C +      LSY+ +VF  I  
Sbjct: 9   LSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 68

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+ ++WN++++GYS +    +    +  ++R+   PD +TFP V+KACS +  ++ G+ +
Sbjct: 69  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 128

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V++ G + +++V T L+ +Y    E++   +VF+++P+ NVV+W ++I G+ +    
Sbjct: 129 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRF 188

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
            +A   F  M +   V  N  I   + +   R          E NV+  T++ID YAK G
Sbjct: 189 SDAIEAFREM-QSIGVKPNETIMVDLLVACGRCFDPYCQSKFEFNVILATSLIDMYAKCG 247

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           DM +AR LF+  P+R++V+W+++I+GY+QNG  +EA+ +FSDM    + PD+    S++ 
Sbjct: 248 DMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIR 307

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           A    G   L   + +Y+S++   +  A ++ ALV+M AK GN + A ++FE +  +D +
Sbjct: 308 ASMIQGCSQLGQTIHAYVSKTGF-VKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTI 366

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           ++  +I GL+ HGHG +A+S+F RM  EG  TPD + +  VL ACSH+GLVE+G R+F  
Sbjct: 367 AWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAE 426

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+++Y + P+ EHY CMVD+L R G  + A  L+ +MPV+P A+ WGALL  C+++ +++
Sbjct: 427 MRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGCEIHENLD 486

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L + + + + E E   +G YVLLSNIYA A RW DV L+R  MK + + K+   SS+
Sbjct: 487 LADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKLLAHSSV 543


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 316/531 (59%), Gaps = 16/531 (3%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLL-- 108
           H+ ++H+ ++K+GL +D    +  I+  ++L   +     VF+  V  PN+   ++    
Sbjct: 113 HVQELHAQLLKQGLHRDPHTASKLIA-SYALLRRVPACRCVFSAAVALPNSPFPSSTTLL 171

Query: 109 -----KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
                + Y+ NS       +F+ +   +     Y+F +   A + +  VR     HA V+
Sbjct: 172 TKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVR---GAHAHVV 228

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G  ED FVG +LID Y K + +S A+KVFDEM  R+VVSW   +      G++  A++
Sbjct: 229 KLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARS 288

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
           +FD MPE+  VSWN ++ G  K G+   A +LF  MP RNVVS++T++  Y K GDM  A
Sbjct: 289 MFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 348

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R +F+  P +++V W+ ++S  AQ G  +EA ++F++M    ++ D   +VS+++AC++ 
Sbjct: 349 RVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 408

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFET-MPNRDVVSYC 401
           G+L L   +  ++ +    LSR+ ++  AL+DM  KCG ++RA  +F+T +  +D+VS+ 
Sbjct: 409 GSLALGKRIHRHVRQR--KLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWN 466

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            +I G ++HG G +A+ LF +M  +G  PD V    VL+AC+H+GLVE+G RFF  M+  
Sbjct: 467 IIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETD 526

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y I P  EHY CMVDLLGR G +K A +++  MP EP+   WG+LL AC+L+ ++E  EL
Sbjct: 527 YGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAEL 586

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             N L  L+P +AG+Y +LSNIYA A +W D+   R +MK  G +K  G S
Sbjct: 587 AVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSS 637


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 316/531 (59%), Gaps = 16/531 (3%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLL-- 108
           H+ ++H+ ++K+GL +D    +  I+  ++L   +     VF+  V  PN+   ++    
Sbjct: 41  HVQELHAQLLKQGLHRDPHTASKLIA-SYALLRRVPACRCVFSAAVALPNSPFPSSTTLL 99

Query: 109 -----KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
                + Y+ NS       +F+ +   +     Y+F +   A + +  VR     HA V+
Sbjct: 100 TKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVR---GAHAHVV 156

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G  ED FVG +LID Y K + +S A+KVFDEM  R+VVSW   +      G++  A++
Sbjct: 157 KLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARS 216

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
           +FD MPE+  VSWN ++ G  K G+   A +LF  MP RNVVS++T++  Y K GDM  A
Sbjct: 217 MFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 276

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R +F+  P +++V W+ ++S  AQ G  +EA ++F++M    ++ D   +VS+++AC++ 
Sbjct: 277 RVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 336

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFET-MPNRDVVSYC 401
           G+L L   +  ++ +    LSR+ ++  AL+DM  KCG ++RA  +F+T +  +D+VS+ 
Sbjct: 337 GSLALGKRIHRHVRQR--KLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWN 394

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            +I G ++HG G +A+ LF +M  +G  PD V    VL+AC+H+GLVE+G RFF  M+  
Sbjct: 395 IIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETD 454

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y I P  EHY CMVDLLGR G +K A +++  MP EP+   WG+LL AC+L+ ++E  EL
Sbjct: 455 YGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAEL 514

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             N L  L+P +AG+Y +LSNIYA A +W D+   R +MK  G +K  G S
Sbjct: 515 AVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSS 565


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 318/521 (61%), Gaps = 24/521 (4%)

Query: 69  HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS---RFIEVFTIFV 125
           + L+AH +S+  SL    +YS  VF      +   WN++L+ +  ++   R ++ +T  +
Sbjct: 14  NKLIAHVLSM-GSLGVGYAYS--VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEML 70

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK 185
              R   VPD++TFP ++K C+ +L  + G  +H  V+++ +  D+++ T+L+++Y    
Sbjct: 71  E--RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG 128

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIG 241
           ++  AR +F+ M  RN V WT+MI GY       EA  ++  M E       V+   L+ 
Sbjct: 129 DLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVS 188

Query: 242 GLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
              ++ DL    +L   + E ++    V  + +++ YAK GD+ +AR +F+   D+DV A
Sbjct: 189 ACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYA 248

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           WSALI GY +N +  EA+++F ++    N++P+E  +++++SAC+Q+G+L+   WV  Y+
Sbjct: 249 WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 357 SRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           +R+     + H ++   +L+DM +KCG++D A  +F++M  +D++S+ SM+ G ++HG G
Sbjct: 309 TRTQ----KGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLG 364

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           R+A++ F  M +  L PDE+ F  VLTACSH GLV++G + F  ++ +Y +    EHY C
Sbjct: 365 REALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLL R G L  A E +  MP++P  + WG++LGAC++Y+++ELGE  A  L +LEP N
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTN 484

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            G Y+LLSNIYA    W +V  VR  M E+G++K PGCSS+
Sbjct: 485 DGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSV 525


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/558 (35%), Positives = 318/558 (56%), Gaps = 61/558 (10%)

Query: 60  IIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGY--SQNSR 116
           ++  GL +D    +  I+ C  S    L Y T +     NPNTF WN  ++G+  S+N R
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 117 FIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
             E   ++ R+++ +   PD YT+PL+ KAC+ +  +R G+ I   V+  G D D+FV  
Sbjct: 61  --EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSN 118

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF---------- 225
           ++I L     ++  ARK+FD+   R++VSW +MI GY   G   EA   +          
Sbjct: 119 AVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKP 178

Query: 226 ----------------DLMPERSNVSW-------------NALIGGLVKIGDLRSARQLF 256
                           DL   R +  +             NAL+   +K G+L SAR+LF
Sbjct: 179 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           D M  + +VS+TTM               LF+  PD+DVV W+A+I GY    +  EA+ 
Sbjct: 239 DSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALA 283

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F++M + N+ PDE  +VS +SACSQ+G LD+  W+  Y+ +  + L+ A +  AL+DM 
Sbjct: 284 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVA-LGTALIDMY 342

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCG + +A ++F+ +P R+ +++ ++I GL++HG+   A++ F  M+   + PDEV F 
Sbjct: 343 AKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFL 402

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            +L+AC H GLVE+G ++F  M + + + P  +HY+CMVDLLGR G L+ A EL+ SMP+
Sbjct: 403 GLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPI 462

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           E  A  WGAL  AC+++ ++ +GE  A++L +++P ++G YVLL+N+Y  A+ W +    
Sbjct: 463 EADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKX 522

Query: 557 RSKMKERGLRKIPGCSSL 574
           R  M++RG+ K PGCSS+
Sbjct: 523 RKLMRQRGVEKTPGCSSI 540


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/513 (38%), Positives = 293/513 (57%), Gaps = 40/513 (7%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   W  L++ Y       E   ++  L R + V      PLV+KAC+ +  V+ G A+
Sbjct: 58  PSLSNWCHLIRSYLSQGAPREALLVYTGL-RRKGVYLLGVAPLVLKACASLSIVKHGKAL 116

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA  I+ GVD DV +GTSL+ +Y K   +  +RKVFD MPERN V+W AMI GY   GD 
Sbjct: 117 HAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDS 176

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTMIDGYAK 276
             A  +F+ M  R+ V+W  +I G  + GD  +AR+ FD++P   RNVV++T M+DGYA+
Sbjct: 177 KSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYAR 236

Query: 277 VGDMTSARSLFEAAPDRDVVAWSA-------------------------------LISGY 305
             +M +AR +FE  P R+  AWS+                               LISGY
Sbjct: 237 NAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGY 296

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           AQNG  +EA++ F  M ++  +PDE  + S++SACSQ+G LD    +   ++   + L++
Sbjct: 297 AQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQ 356

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V+  LVDM AKCG++  A  +FE M +R+   + SMI G +IHG  ++A+  F RM  
Sbjct: 357 -FVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMED 415

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
               PDE+ F  VL+AC+H G V  G   F  M+  Y +    +HY C++DLLGR G +K
Sbjct: 416 SHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDLLGRAGRIK 474

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS----YVLLS 541
            AY+L+  MPV+P+   WGALLGAC+++ D+E+ + V   + +++   +      YVLLS
Sbjct: 475 EAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLS 534

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           NIYA +DRW     +R +M  +G +K  GCSS+
Sbjct: 535 NIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 567



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 9/224 (4%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + ++F+RI   N   WN+L+ GY+QN    E    F ++  E   PD+ T   V+ ACS 
Sbjct: 274 ARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQ 333

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G  IH  +   G+  + FV   L+D+Y K  +++ AR +F+ M  RN   W +M
Sbjct: 334 LGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSM 393

Query: 209 IVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           I G+A  G   EA   F  M +       +++ +++      G + +  ++F  M +  +
Sbjct: 394 ISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGL 453

Query: 265 VS----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
            +    Y  +ID   + G +  A  L +  P + + V W AL+ 
Sbjct: 454 TTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLG 497



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 2/179 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    + S L+   +  L     ++H  +  KG++ +  ++   + + ++    L+ +  
Sbjct: 319 PDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDM-YAKCGDLANARL 377

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  + + N   WN+++ G++ + +  E    F R+      PD+ TF  V+ AC+H   
Sbjct: 378 IFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGF 437

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
           V  G  I + + ++G+   +     LIDL G+   I  A  +   MP + N V W A++
Sbjct: 438 VNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALL 496


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/575 (34%), Positives = 329/575 (57%), Gaps = 25/575 (4%)

Query: 14  KSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVA 73
           K+ ++++P  S ++  +  +   LL +LT     K  T   Q+H+H+   G  + ++ +A
Sbjct: 5   KTTATLIPKPSSTSTFDSLQCGTLLQSLT---NSKSLTQALQLHAHVTTGGTLRRNTYLA 61

Query: 74  HFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
             ++ C+++   + Y+  +F++IV  N+FLWN++++GY+ N+       ++++++     
Sbjct: 62  TKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQK 121

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PD +T+P V+KAC  +L    G  +HA V+  G++EDV+VG S++ +Y K  ++  AR V
Sbjct: 122 PDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVV 181

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDL 249
           FD M  R++ SW  M+ G+   G+   A  VF  M     V    +  AL+     + DL
Sbjct: 182 FDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDL 241

Query: 250 RSARQLFDEMPER-------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
           +  +++   +          N     ++ID Y     ++ AR LFE    +DVV+W++LI
Sbjct: 242 KVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLI 301

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SGY + G   +A+++F  M      PDE  ++S+++AC+Q+  L L   V SY+      
Sbjct: 302 SGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYV------ 355

Query: 363 LSRAHVI-----AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           + R +V+      AL+ M A CG++  A  +F+ MP +++ +   M+ G  IHG GR+A+
Sbjct: 356 VKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAI 415

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           S+F  ML +G+TPDE  FT VL+ACSH GLV++G   F  M   Y++ P P HY+C+VDL
Sbjct: 416 SIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDL 475

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR G+L  AY ++ +M ++P+   W ALL AC+L+ +++L  + A +LFEL P     Y
Sbjct: 476 LGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGY 535

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           V LSNIYA   RW DV  VR+ + +R LRK P  S
Sbjct: 536 VCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYS 570


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 319/567 (56%), Gaps = 61/567 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L +++ CK    L Q H  I   GL+    ++   I++           ++ FN      
Sbjct: 6   LRILQHCKNIRELKQTHLQIFIHGLQHSDFMLPKLITV-----------SSAFN------ 48

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
                  L  Y+ +   + V++    L+ E    + +TF  ++K      ++ +G  IH 
Sbjct: 49  -------LLDYATHKEALRVYSRMKALMVE---ANSFTFTFLLKCFETSQALEDGRVIHG 98

Query: 161 AVIRWGVDEDVFVGTSLIDLYGK--------------------------------RKEIS 188
            +++ G    VFV  SL+  Y                                  R EI 
Sbjct: 99  EILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQ 158

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD 248
            A  + D+MPERN+V+W +++ G +  G++  A +VF+ MP R+ VSWN++I G V+IGD
Sbjct: 159 SAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGD 218

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           +R+A+ +F +MPE+ VVS+T MI GYA  GD+ SA ++F   P ++VV+W+A+ISGY  N
Sbjct: 219 VRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHN 278

Query: 309 GQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
            + D+A+ +F  M  +   +PD+  L+S++SAC+ +G+L+   W++SY+ ++ + LS   
Sbjct: 279 HEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIP- 337

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           +  AL+DM AKCG+++ A E+F  M  R ++++ +M+ GL+++G  R+A++LFD+M  EG
Sbjct: 338 LGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEG 397

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
             PD+V F  VL+AC+H GLVE+G R F+ M   + I P  EHY CMVDLLGR G L+ A
Sbjct: 398 TKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA 457

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
                 M ++P+A  W  LL  CK++ + +L + V  ++ + EP N     L+SN+ A+ 
Sbjct: 458 VRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASF 517

Query: 548 DRWLDVCLVRSKMKERGLRKIPGCSSL 574
            RW DV   R  M+++ + K+PGCSS+
Sbjct: 518 GRWEDVLSFRVAMRQQRMEKVPGCSSI 544


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 326/573 (56%), Gaps = 42/573 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHS--LVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+++C+    L+Q+H+H++  G     S  L+A + +L  +    L ++  +F+ I  P+
Sbjct: 17  LLRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPD 76

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             ++NT+++ Y  +S   E   +   ++R   +P+++T P V+KAC+   +     A+H 
Sbjct: 77  RVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHG 136

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             +R G+   VFVG +L+  Y     +  +R+ FDEM +RNVVSW +MI GYA  GD  E
Sbjct: 137 VALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTRE 196

Query: 221 AKTVFDLMPERS---------------NVSWNALIGGLV--------------------- 244
             ++F  M  +                +   N  IG LV                     
Sbjct: 197 VCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVD 256

Query: 245 ---KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
              K GDL  AR+ F+ MP ++VVS+T+M+    K G + +AR  F+  P+R++V+W+A+
Sbjct: 257 MYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAM 316

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           IS Y Q GQ  EA+ +++ M S+ + PDE  LV+++SA  ++G+L +   V  Y+ R ++
Sbjct: 317 ISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYI-RDNI 375

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
                 ++ +L+DM AKCG +D A  LF  M NR+VVS+  +I GL++HG     ++ F 
Sbjct: 376 YNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFR 435

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
            M+++   PD + F  +L+ACSH GL+E G  +FE+M++VY +    EHYACMVDLLGR 
Sbjct: 436 SMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRR 495

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541
           GHL+ A  L+  MP++P    WGALLGAC+++ ++++G  V  +L ELE  + G +VL+S
Sbjct: 496 GHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLIS 555

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           N+     +W D+  +R  MKE G RK  G SS+
Sbjct: 556 NLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSI 588


>gi|359491277|ref|XP_003634255.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g22760-like [Vitis vinifera]
          Length = 583

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 305/515 (59%), Gaps = 32/515 (6%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           AT   Y  ++ +   +P++F W   ++ ++Q+ +F   F ++V++ R    P  +     
Sbjct: 40  ATIAHYVHSILHHSKSPDSFSWACTIRFFTQHGQFKGAFALYVQMQRWGLCPTTFALSSA 99

Query: 143 IKACSHVLSVREGTAIHAAVIRWGV---DEDVFVGTSLID-------------------- 179
           +KAC  ++      +IH  V ++G     + +++ T+L+D                    
Sbjct: 100 LKACDRIVYRMGVLSIHGQVQKFGFCGGGDGIYMETALVDFDCKLGDMEISSKMFDEXGW 159

Query: 180 ---LYG--KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
              L G  K  +++ A++VFDE+P+++V+SW +M   YA  GDL +A ++F  MPER+  
Sbjct: 160 HSMLAGCLKSGDLAVAQRVFDEIPQKDVISWNSMFSXYARSGDLEKASSLFQQMPERNFA 219

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWNA+I G V+ GDL SAR  FD MP+RN  S+ TMI GY+K GD+ SA  LF+    +D
Sbjct: 220 SWNAMINGYVEFGDLESARSFFDAMPQRNSASWMTMISGYSKCGDVDSACELFDQVGGKD 279

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMC--SKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           ++ ++A+I+ YAQN +  EA+K+F+ M   + NVQPDE  L S++S CSQ G+     W+
Sbjct: 280 LLLFNAVIACYAQNSKLKEALKLFNMMLHPNVNVQPDEMTLASVISPCSQFGDFRFGPWI 339

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
           +SY+ R  +++    +  AL+D+ A CG++D+A ELF  +  +D+V+Y +MI G  ++G 
Sbjct: 340 ESYMRRLGVEMD-GRLGTALLDLYAXCGSIDKAYELFHGLRKKDLVAYTAMILGCGMNGK 398

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
              A+ LFD M+   + P+ + FT +LT  +H GLVE+G+  F  M+  Y +VP  +HY 
Sbjct: 399 AIDAIKLFDEMVDAQICPNLIMFTGLLTTYNHSGLVEEGYHCFTTMKK-YNLVPLVDHYG 457

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
            MVDL GR G L+ A EL+ SMP++PHA  WGALL AC+L+++ +LGE+ A   FELEP 
Sbjct: 458 IMVDLFGRAGWLQEALELIKSMPMQPHAGVWGALLFACRLHNNADLGEIAAQHFFELEPD 517

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
             G   L  NIY + +R  DV  +R   KE+   K
Sbjct: 518 TTGYCSLPCNIYVSGERLDDVRRLRKIRKEKTFSK 552


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/581 (34%), Positives = 330/581 (56%), Gaps = 47/581 (8%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRI 96
           S+L L++ CK      Q+H+  I  GL      ++  IS    L +   L +S  +F++I
Sbjct: 11  SSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQI 70

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREG 155
             PN F+WNT+++GYS++    E   +++ +I +  A P+ +TFP ++ +C+ + S+  G
Sbjct: 71  DCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPG 130

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA-- 213
             +H+ +I+ G + D+FV  +LI LY     ++ AR +FDE   R++VS+  MI GYA  
Sbjct: 131 HEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEV 190

Query: 214 --------------------------------------SVGDLVEAKTVFDLMPERSNVS 235
                                                 +VG  + A+   +L    SN+ 
Sbjct: 191 NQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNIL 250

Query: 236 W-NALIGGLVKIGDLRSARQLFDEM-PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
             +A++    K G +  A ++F  M   ++  ++++M+ GYA+ G++  AR LF    +R
Sbjct: 251 LKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHER 310

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           DV++W+A+ISGY+Q GQ  EA+++F +M +  ++PDE  LV+++SAC+++G  DL   + 
Sbjct: 311 DVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLY 370

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHG 411
                + +      + AA++DM AKCG++D A E+F  +    +    + SMI GL+ HG
Sbjct: 371 HQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHG 430

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
            G  A+++F  ++S GL PDEV F  VL AC H GL+E+G + FE+M N Y I P  EHY
Sbjct: 431 LGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHY 490

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
            CMVDLLGR G L+ AY+L+  MP E ++  W ALL AC+ + ++++GE+   +L E+E 
Sbjct: 491 GCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEA 550

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           Q+   YVLLSNI A A++W +   VR  M++ G+RK PG S
Sbjct: 551 QHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWS 591


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/485 (39%), Positives = 296/485 (61%), Gaps = 11/485 (2%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + +VF+R+   N   WN LL  Y QNS+  E   +F           +  + LV   C  
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF---------KSRENWALVSWNCLL 226

Query: 149 VLSVREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
              V++   + A      ++  DV    ++I  Y +  +I  AR++FDE P ++V +WTA
Sbjct: 227 GGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+ GY     + EA+ +FD MPER+ VSWNA++ G V+   +  A++LFD MP RNV ++
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            TMI GYA+ G ++ A++LF+  P RD V+W+A+I+GY+Q+G   EA+++F  M  +  +
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +     S +S C+ V  L+L   +   L +   +     V  AL+ M  KCG+++ A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEAND 465

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           LF+ M  +D+VS+ +MI G S HG G  A+  F+ M  EGL PD+     VL+ACSH GL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V+ G ++F  M   Y ++P+ +HYACMVDLLGR G L+ A+ L+ +MP EP A+ WG LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GA +++ + EL E  A+++F +EP+N+G YVLLSN+YA++ RW DV  +R +M+++G++K
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645

Query: 568 IPGCS 572
           +PG S
Sbjct: 646 VPGYS 650



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 149/534 (27%), Positives = 240/534 (44%), Gaps = 74/534 (13%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS-TAVFNRIVNPNTFLWNTLLKG 110
            LH    + +K+     H   A+F SL  +  T +  S T    +  + +   WN  +  
Sbjct: 15  QLHYTSLNGLKRRCNNAHG-AANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISS 73

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI-HAAVIRWGVDE 169
           Y +  R  E   +F R+ R  +V         ++     L+ +    +    ++ W V  
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNV-- 131

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
                  +I  Y + + +  AR++F+ MPER+V SW  M+ GYA  G + +A++VFD MP
Sbjct: 132 -------MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP 184

Query: 230 ERSNVSWNALI-------------------------------GGLVKIGDLRSARQLFDE 258
           E+++VSWNAL+                               GG VK   +  ARQ FD 
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDS 244

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           M  R+VVS+ T+I GYA+ G +  AR LF+ +P +DV  W+A++SGY QN   +EA ++F
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M  +N    E    ++++   Q   ++++  +        M          ++   A+
Sbjct: 305 DKMPERN----EVSWNAMLAGYVQGERMEMAKELFDV-----MPCRNVSTWNTMITGYAQ 355

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG +  A  LF+ MP RD VS+ +MI G S  GH  +A+ LF +M  EG   +  +F+  
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD-----LLGRTGHLKSAYELLNS 493
           L+ C+ V  +E G       Q    +V       C V      +  + G ++ A +L   
Sbjct: 416 LSTCADVVALELG------KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469

Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLFE------LEPQNAGSYVLLS 541
           M  +   S W  ++     YS    GE VA R FE      L+P +A    +LS
Sbjct: 470 MAGKDIVS-WNTMIAG---YSRHGFGE-VALRFFESMKREGLKPDDATMVAVLS 518



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 23/273 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S +  +F+++   +   W  ++ GYSQ+    E   +FV++ RE    ++ +F   +  
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ V+++  G  +H  +++ G +   FVG +L+ +Y K   I  A  +F EM  +++VSW
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 478

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             MI GY+  G    A   F+ M        + +  A++      G +   RQ F  M +
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538

Query: 262 R-----NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD--- 312
                 N   Y  M+D   + G +  A +L +  P + D   W  L+     +G  +   
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAE 598

Query: 313 -EAVKIFSDMCSKNVQPDE---FILVSLMSACS 341
             A KIF+      ++P+    ++L+S + A S
Sbjct: 599 TAADKIFA------MEPENSGMYVLLSNLYASS 625



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 9/187 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  ++K G E     V + + L +     +  +  +F  +   +   WNT++ GYS++
Sbjct: 430 QLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488

Query: 115 SRFIEV-FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVF 172
             F EV    F  + RE   PD  T   V+ ACSH   V +G      + + +GV  +  
Sbjct: 489 G-FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKT----VFDL 227
               ++DL G+   +  A  +   MP E +   W  ++      G+   A+T    +F +
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 607

Query: 228 MPERSNV 234
            PE S +
Sbjct: 608 EPENSGM 614


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 322/564 (57%), Gaps = 13/564 (2%)

Query: 18  SMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS 77
           SM  +  +  P+   +   LL + T  K  K      Q+H+H+I   + ++++ +   ++
Sbjct: 46  SMREHPLQQYPLTSLQCGALLQSFTNTKSFK---QGQQLHAHMISFSILENNTYLNTKLA 102

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
             ++    +S +  +F+ IV  N+FLWN +++GY+ N   ++   ++  ++      D +
Sbjct: 103 AFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNF 162

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+P V+KAC  +L V  G  +H+ V+  G++ D++VG SL+ +Y K  ++  AR VFD M
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-WNALIGGLVKIGDLRSARQ-- 254
            ER++ SW  MI GYA   D   A  VFDLM +    +    L+G L    DL++ ++  
Sbjct: 223 AERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK 282

Query: 255 ------LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
                 + + +   N     ++I+ Y     M  AR LFE    +D V+W+++I GYA+N
Sbjct: 283 VIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARN 342

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G   E++++F  M      PD+   ++++ AC Q+  L     + SYL +   D +   V
Sbjct: 343 GDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFD-ANTIV 401

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             ALVDM +KCG++  +  +F+ MP++ +VS+ +M+ G  +HG GR+A+S+ D M +  +
Sbjct: 402 GTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSV 461

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD   FT +L+ACSH GLV +G   F  M+  Y + P+  HY+CMVDLLGR GHL  AY
Sbjct: 462 IPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAY 521

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
            ++ +M ++P +  W ALL A +L+ +I+L E+ A ++F++ P+   SY+ LSNIYA   
Sbjct: 522 VIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEK 581

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW DV  VR+ ++ +GL+K PGCS
Sbjct: 582 RWDDVERVRAMVRRKGLKKSPGCS 605


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/535 (36%), Positives = 304/535 (56%), Gaps = 66/535 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+L+K+C    HLHQ H  ++ +GL+QD+ L++ FI  C SL     YS ++F     P+
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS-HYSHSIFTHKTRPD 103

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            +L+NT++K  S      E   ++ R++  +   D Y+ P V+KA   +L++  G  IH 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             I  G+  D+ V                                TA+I  Y+S G + E
Sbjct: 164 QAIGTGLVSDIHV-------------------------------VTALIQMYSSCGCVSE 192

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A                               RQLFD +  R+V  +  M+ GYAKVGD+
Sbjct: 193 A-------------------------------RQLFDGVCFRDVAFWNAMVAGYAKVGDV 221

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            +AR LFE  P+R+V++W+A+I+GYAQ  +P+EA+ +F  M  + V+PDE  +++ +SAC
Sbjct: 222 DNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSAC 281

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSR-AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           + +G L+L  W+ +Y+ +    LS+   +  AL+DM AKCG +++A E+F+ M ++ V++
Sbjct: 282 AHLGALELGEWIHNYIDKH--GLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + SMI GL++HG GR+A+ +F  M    + P+E+ F  +L+AC HVGLVE G  +F+ M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             Y I P  +HY CM+DLLGR G L+ A EL+  MP E +A  WG+LL A +++ D ELG
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +     L ++EP N+G+Y LLSNIYAT  +W +  +VR  M++ G++K+PG S +
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/482 (39%), Positives = 292/482 (60%), Gaps = 11/482 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+R+   N   WN LL  Y QNS+  E   +F           +  + LV   C     
Sbjct: 174 VFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF---------GSRENWALVSWNCLLGGF 224

Query: 152 VREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V++   + A      +   DV    ++I  Y +  EI  AR++FDE P  +V +WTAM+ 
Sbjct: 225 VKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVS 284

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           GY     + EA+ +FD MPER+ VSWNA++ G V+   +  A++LFD MP RNV ++ TM
Sbjct: 285 GYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTM 344

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I GYA+ G ++ A++LF+  P RD V+W+A+I+GY+Q+G   EA+++F  M  +  + + 
Sbjct: 345 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNR 404

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
               S +S C+ V  L+L   +   L +   +     V  AL+ M  KCG+++ A +LF+
Sbjct: 405 SSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEANDLFK 463

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M  +D+VS+ +MI G S HG G +A+  F+ M  EGL PD+     VL+ACSH GLV+ 
Sbjct: 464 EMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDK 523

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G ++F  M   Y + P+ +HYACMVDLLGR G L+ A+ L+ +MP EP A+ WG LLGA 
Sbjct: 524 GRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGAS 583

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ + EL E  A+++F +EP+N+G YVLLSN+YA++ RW DV  +R +M+++G++K+PG
Sbjct: 584 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 643

Query: 571 CS 572
            S
Sbjct: 644 YS 645



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 218/461 (47%), Gaps = 39/461 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF R+   ++  +N ++ GY +N  F     +F  +   + V    ++ ++IK   +V +
Sbjct: 81  VFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLV----SWNVMIKG--YVRN 134

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              G A    +     + DV    +++  Y +   +  AR+VFD MPE+N VSW A++  
Sbjct: 135 RNLGKA--RELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSA 192

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y     L EA  +F      + VSWN L+GG VK   +  ARQ FD M  R+VVS+ T+I
Sbjct: 193 YVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTII 252

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GYA+ G++  AR LF+ +P  DV  W+A++SGY QN   +EA ++F  M  +N    E 
Sbjct: 253 TGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERN----EV 308

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              ++++   Q   ++++  +        M          ++   A+CG +  A  LF+ 
Sbjct: 309 SWNAMLAGYVQGERVEMAKELFDV-----MPCRNVSTWNTMITGYAQCGKISEAKNLFDK 363

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           MP RD VS+ +MI G S  GH  +A+ LF  M  EG   +  +F+  L+ C+ V  +E G
Sbjct: 364 MPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELG 423

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVD-----LLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
                  Q    +V       C V      +  + G ++ A +L   M  +   S W  +
Sbjct: 424 ------KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTM 476

Query: 507 LGACKLYSDIELGELVANRLFE------LEPQNAGSYVLLS 541
           +     YS    GE  A R FE      L+P +A    +LS
Sbjct: 477 IAG---YSRHGFGE-EALRFFESMKREGLKPDDATMVAVLS 513



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 181/388 (46%), Gaps = 42/388 (10%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D D+      I  Y +    S A +VF  MP  + VS+ AMI GY   G+   A+ +FD 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPER  VSWN +I G V+  +L  AR+LF+ MPER+V S+ T++ GYA+ G +  AR +F
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF 175

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P+++ V+W+AL+S Y QN + +EA  +F          + + LVS    C   G + 
Sbjct: 176 DRMPEKNDVSWNALLSAYVQNSKLEEACVLFG-------SRENWALVSW--NCLLGGFVK 226

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               V++      M +        ++   A+ G +D A +LF+  P  DV ++ +M+ G 
Sbjct: 227 KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGY 286

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM--------- 458
             +    +A  LFDRM       +EV++  +L        VE     F+ M         
Sbjct: 287 IQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWN 342

Query: 459 ---------------QNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSMPVEP--- 498
                          +N++  +P   P  +A M+    ++GH   A  L   M  E    
Sbjct: 343 TMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRL 402

Query: 499 HASAWGALLGACKLYSDIELGELVANRL 526
           + S++ + L  C     +ELG+ +  RL
Sbjct: 403 NRSSFSSALSTCADVVALELGKQLHGRL 430



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 23/273 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S +  +F+++   +   W  ++ GYSQ+    E   +FV + RE    ++ +F   +  
Sbjct: 354 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALST 413

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ V+++  G  +H  +++ G +   FVG +L+ +Y K   I  A  +F EM  +++VSW
Sbjct: 414 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 473

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             MI GY+  G   EA   F+ M        + +  A++      G +   RQ F  M +
Sbjct: 474 NTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQ 533

Query: 262 R-----NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD--- 312
                 N   Y  M+D   + G +  A +L +  P + D   W  L+     +G  +   
Sbjct: 534 DYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAE 593

Query: 313 -EAVKIFSDMCSKNVQPDE---FILVSLMSACS 341
             A KIF+      ++P+    ++L+S + A S
Sbjct: 594 TAADKIFA------MEPENSGMYVLLSNLYASS 620



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 7/186 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  ++K G E     V + + L +     +  +  +F  +   +   WNT++ GYS++
Sbjct: 425 QLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA-IHAAVIRWGVDEDVFV 173
               E    F  + RE   PD  T   V+ ACSH   V +G    H     +GV  +   
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKT----VFDLM 228
              ++DL G+   +  A  +   MP E +   W  ++      G+   A+T    +F + 
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 603

Query: 229 PERSNV 234
           PE S +
Sbjct: 604 PENSGM 609


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/535 (36%), Positives = 304/535 (56%), Gaps = 66/535 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+L+K+C    HLHQ H  ++ +GL+QD+ L++ FI  C SL     YS ++F     P+
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFS-HYSHSIFTHKTRPD 103

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            +L+NT++K  S      E   ++ R++  +   D Y+ P V+KA   +L++  G  IH 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             I  G+  D+ V                                TA+I  Y+S G + E
Sbjct: 164 QAIGTGLVSDIHV-------------------------------VTALIQMYSSCGCVSE 192

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A                               RQLFD +  R+V  +  M+ GYAKVGD+
Sbjct: 193 A-------------------------------RQLFDGVCFRDVAFWNAMVAGYAKVGDV 221

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            +AR LFE  P+R+V++W+A+I+GYAQ  +P+EA+ +F  M  + V+PDE  +++ +SAC
Sbjct: 222 DNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSAC 281

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSR-AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           + +G L+L  W+ +Y+ +    LS+   +  AL+DM AKCG +++A E+F+ M ++ V++
Sbjct: 282 AHLGALELGEWIHNYIDKH--GLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + SMI GL++HG GR+A+ +F  M    + P+E+ F  +L+AC HVGLVE G  +F+ M 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             Y I P  +HY CM+DLLGR G L+ A EL+  MP E +A  WG+LL A +++ D ELG
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELG 459

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +     L ++EP N+G+Y LLSNIYAT  +W +  +VR  M++ G++K+PG S +
Sbjct: 460 KQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 306/538 (56%), Gaps = 40/538 (7%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPN 100
            L ++C+    + QVH+ ++ +G   D S +   I +    +    +++  VF+RI +P+
Sbjct: 13  ALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPD 72

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-------VPDKYTFPLVIKACSHVLSVR 153
            F++NTL++G + +    +  +I+ R+ R  A        PDK TFP V++AC+ + +  
Sbjct: 73  RFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGE 132

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +HA V++ G + D FV  +LI ++                               A
Sbjct: 133 TGAQVHAHVVKAGCESDAFVRNALIGMH-------------------------------A 161

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
           ++GDL  A  +FD       V+W+A+I G  + GD+ +AR+LFDE P +++VS+  MI  
Sbjct: 162 TLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITA 221

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK+GDM  AR LF+ APDRDVV+W+A+ISGY + G   +A+++F  M +   +PD   +
Sbjct: 222 YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTM 281

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETM 392
           +SL+SAC+  G+LD    +  +LS     +     +  AL+DM AKCG+M  A E+F  M
Sbjct: 282 LSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLM 341

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
            +++V ++ S+I GL++HGH  +++++F +ML   + PDE+ F  VL ACSH G+V+ G 
Sbjct: 342 QDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGH 401

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
            +F  MQ  Y I P+ +HY CMVD+L R G LK A+E + +M +EP+   W  LLGAC++
Sbjct: 402 EYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRI 461

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + +IEL E     L +     +G +VLLSNIYA+   W     +R  M + G+ K  G
Sbjct: 462 HGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAG 519



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 135/311 (43%), Gaps = 20/311 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+   + +   WN ++ GY +     +   +F ++      PD  T   ++ AC+    
Sbjct: 234 LFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGD 293

Query: 152 VREGTAIHAAVI-RWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +  G  +H  +  R+  +     +G +LID+Y K   ++ A +VF  M ++NV +W ++I
Sbjct: 294 LDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSII 353

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER--- 262
            G A  G   E+  VF  M + +     +++ A++      G +    + F  M +R   
Sbjct: 354 GGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRI 413

Query: 263 --NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFS 319
             N+  Y  M+D  ++ G +  A         + + V W  L+     +G+ + A     
Sbjct: 414 EPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANR 473

Query: 320 DMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
           ++  +++    +F+L+S + A        +  W  S   R  MD S  +  A    +++ 
Sbjct: 474 ELLKARSDASGDFVLLSNIYA-------SVGEWPGSENMRKLMDDSGVNKEAGRAVIDSS 526

Query: 379 CGNMDRAAELF 389
             ++ R++ LF
Sbjct: 527 SKDLMRSSRLF 537


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 306/538 (56%), Gaps = 40/538 (7%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPN 100
            L ++C+    + QVH+ ++ +G   D S +   I +    +    +++  VF+RI +P+
Sbjct: 13  ALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPD 72

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-------VPDKYTFPLVIKACSHVLSVR 153
            F++NTL++G + +    +  +I+ R+ R  A        PDK TFP V++AC+ + +  
Sbjct: 73  RFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGE 132

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +HA V++ G + D FV  +LI ++                               A
Sbjct: 133 TGAQVHAHVVKAGCESDAFVRNALIGMH-------------------------------A 161

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
           ++GDL  A  +FD       V+W+A+I G  + GD+ +AR+LFDE P +++VS+  MI  
Sbjct: 162 TLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITA 221

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK+GDM  AR LF+ APDRDVV+W+A+ISGY + G   +A+++F  M +   +PD   +
Sbjct: 222 YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTM 281

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETM 392
           +SL+SAC+  G+LD    +  +LS     +     +  AL+DM AKCG+M  A E+F  M
Sbjct: 282 LSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLM 341

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
            +++V ++ S+I GL++HGH  +++++F +ML   + PDE+ F  VL ACSH G+V+ G 
Sbjct: 342 QDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGH 401

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
            +F  MQ  Y I P+ +HY CMVD+L R G LK A+E + +M +EP+   W  LLGAC++
Sbjct: 402 EYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRI 461

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + +IEL E     L +     +G +VLLSNIYA+   W     +R  M + G+ K  G
Sbjct: 462 HGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAG 519



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 135/311 (43%), Gaps = 20/311 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+   + +   WN ++ GY +     +   +F ++      PD  T   ++ AC+    
Sbjct: 234 LFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGD 293

Query: 152 VREGTAIHAAVI-RWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +  G  +H  +  R+  +     +G +LID+Y K   ++ A +VF  M ++NV +W ++I
Sbjct: 294 LDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSII 353

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER--- 262
            G A  G   E+  VF  M + +     +++ A++      G +    + F  M +R   
Sbjct: 354 GGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRI 413

Query: 263 --NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFS 319
             N+  Y  M+D  ++ G +  A         + + V W  L+     +G+ + A     
Sbjct: 414 EPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANR 473

Query: 320 DMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
           ++  +++    +F+L+S + A        +  W  S   R  MD S  +  A    +++ 
Sbjct: 474 ELLKARSDASGDFVLLSNIYAS-------VGEWPGSENMRKLMDDSGVNKEAGRAVIDSS 526

Query: 379 CGNMDRAAELF 389
             ++ R++ LF
Sbjct: 527 SKDLMRSSRLF 537


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 312/537 (58%), Gaps = 12/537 (2%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT-- 101
           IK CK      Q+H+ ++  GL  D  + +  +      A  + Y     + +   NT  
Sbjct: 12  IKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEF---FANFVEYGDYACDYLEQGNTRL 68

Query: 102 --FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
             F +N+L+ GY          +++ R++R+  VPD +TFP+++KACS+    REG  +H
Sbjct: 69  GSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVH 128

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V++ G+  D +V  SLI  YG   + SCA KVFDEM  R+VVSW ++I G+   G   
Sbjct: 129 GVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFD 188

Query: 220 EAKTVFDLMP-ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER---NVVSYTTMIDGYA 275
           EA +VF  M  E S  +  +++    + GDL + + +   +  R   N+V    M+D Y 
Sbjct: 189 EAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAMLDMYV 248

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G    A+++F+  P RD+V+W+ +I+G  Q+  P +++++FS M +  + PD  IL S
Sbjct: 249 KNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTS 308

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++SAC+ +G LD   WV  Y+++  +     H+  A+VDM AKCG ++ A ++F +M  R
Sbjct: 309 VLSACASLGTLDFGTWVHEYINQRGIKWD-IHIGTAIVDMYAKCGCIEMALKIFYSMSQR 367

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +  ++ +++ GL++HG   +A++LF+ M+  G+ P+E+ F  +LTAC H GLV++G ++F
Sbjct: 368 NTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYF 427

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           + M  +Y ++P  EHY CM+DL  R G L+ A EL  +MP++P    WG LL AC    +
Sbjct: 428 DNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGN 487

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           IEL   + + + EL+  ++G +VLLSNI A   RW +V  +R  MK+RG+RK PG S
Sbjct: 488 IELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSS 544


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/584 (36%), Positives = 321/584 (54%), Gaps = 50/584 (8%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S +   + L+  CK    ++++H+ +I  G  ++ +L    +      A       A F 
Sbjct: 12  SSISPTIKLLGSCKNSEDVNKIHARLITNGFIKNPNLTTRIVL---DFADSRRSYLAEFA 68

Query: 95  RIVN-----------PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
           R V             + FLWN ++K +S      +   +F  ++      DK++  LV+
Sbjct: 69  RFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVL 128

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--- 200
           KACS +  V+EG  IH  + + G+  D+++   LI LY K   +  AR+VFD MP R   
Sbjct: 129 KACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSV 188

Query: 201 ------------------------------NVVSWTAMIVGYASVGDLVE-AKTVFDLMP 229
                                         N++SW  MI GYA   D V  AK +FD MP
Sbjct: 189 SYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMP 248

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           E+  +SWN+LI G VK G +  A+ LF++MP+R+VV++ TM+DGYAK+G +  A+SLF+ 
Sbjct: 249 EKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDR 308

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDL 348
            P RDVVA++++I+GY QN    EA+ IF+DM  + ++ PDE  LV ++SA +Q+G L  
Sbjct: 309 MPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSK 368

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
           +  +  Y+  +   L    +  AL+D  +KCG++ ++  +FE + N+ +  + +MI GL+
Sbjct: 369 AVDIHLYIMDNKFRLG-GKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLA 427

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
           IHG G  A  +  ++    + PD++ F  VL ACSH GLV++G   FE M+  + I P  
Sbjct: 428 IHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKL 487

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           +HY CMVD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E GELVA  LF 
Sbjct: 488 QHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFL 547

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
               N  S+VLLSN+YA+   W +V  VR+ MKER LRKIPGCS
Sbjct: 548 QGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCS 591



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 11/259 (4%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV 72
           HK    +  +  + + ++ P  + L+  L+ I +    +    +H +I+         L 
Sbjct: 330 HKEAIGIFNDMEKESHLS-PDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLG 388

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132
              I   +S    +  S  VF  I N +   WN ++ G + +      F + +++ +   
Sbjct: 389 VALID-TYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSI 447

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCAR 191
            PD  TF  V+ ACSH   V+EG      + R   ++  +     ++D+  +   I  A+
Sbjct: 448 KPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAK 507

Query: 192 KVFDEMP-ERNVVSWTAMIVGYAS-----VGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
            + +EMP E N V W   +   ++      G+LV AK +F L    +  S+  L      
Sbjct: 508 NLIEEMPIEPNDVIWRTFLTACSNHKEFETGELV-AKHLF-LQGGYNPSSFVLLSNMYAS 565

Query: 246 IGDLRSARQLFDEMPERNV 264
            G  +  R++   M ER +
Sbjct: 566 FGMWKEVRRVRTTMKERKL 584


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 298/524 (56%), Gaps = 35/524 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVN 98
           L+  ++ K  T + Q H+ ++K GL  D    +  ++   +   P  +SY+ ++ NRI +
Sbjct: 43  LSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGS 102

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN F  N++++ Y+ +S      T+F  ++     PDKY+F  V+KAC+      EG  I
Sbjct: 103 PNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQI 162

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   I+ G+  DVFV  +L+++YG+      ARKV D M                     
Sbjct: 163 HGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRM--------------------- 201

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                     P R  VSWN+L+   ++ G +  AR LFDEM ERNV S+  MI GYA  G
Sbjct: 202 ----------PVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAG 251

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLM 337
            +  A+ +F++ P RDVV+W+A+++ YA  G  +E +++F+ M   + + PD F LVS++
Sbjct: 252 LVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVL 311

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           SAC+ +G+L    WV  Y+ +  +++    +  ALVDM +KCG +D+A E+F     RDV
Sbjct: 312 SACASLGSLSQGEWVHVYIDKHGIEI-EGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
            ++ S+I  LS+HG G+ A+ +F  M+ EG  P+ + F  VL+AC+HVG+++   + FE 
Sbjct: 371 STWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEM 430

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M +VY + P+ EHY CMVDLLGR G ++ A EL+N +P +  +    +LLGACK +  +E
Sbjct: 431 MSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLE 490

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
             E +ANRL EL  +++  Y  +SN+YA+  RW  V   R  M+
Sbjct: 491 QAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMR 534


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 318/561 (56%), Gaps = 56/561 (9%)

Query: 17  SSMLPNCSRSAPINF-PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHF 75
           +S + N +R+  +NF P+P  +LS       CK    L Q+H+  IK G  QD    A  
Sbjct: 2   NSTIYNPNRT--LNFSPQPPLILS--KPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEV 57

Query: 76  ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ-NSRFI--EVFTIFVRLIREEA 132
           I  C   +  + Y+ AVF ++  PN F WNT+L+  ++ N   +  E   +F  ++ +  
Sbjct: 58  IKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGR 117

Query: 133 V-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
           V P+++TFP V+KAC+    +REG  IH  ++++G  ED FV ++L+ +Y     + CA 
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMY-----VMCA- 171

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
                           M   Y+     +  K V D                     D   
Sbjct: 172 ---------------VMEDAYS-----LFCKNVVDF--------------------DGSC 191

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
             +L     + NVV +  MIDG  ++GD+ SA++LF+  P R VV+W+ +ISGYAQNG  
Sbjct: 192 QMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHF 251

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
            EA+ +F +M S N+ P+   LVS++ A +++G L+L  W+  Y  ++ +++    + +A
Sbjct: 252 IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV-LGSA 310

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           LVDM +KCG++D+A ++FET+P R+ +++ ++I   ++HG    A+  F  M   G+TP+
Sbjct: 311 LVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPN 370

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           +VA+  +L+ACSH GLVE+G  FF  M  V  + P  EHY CMVDLLGR GHL+ A EL+
Sbjct: 371 DVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELI 430

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MP+EP    W ALLGACK++ ++++GE VA  L EL P ++GSYV LSN+YA+   W 
Sbjct: 431 RNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWE 490

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
            V  VR KMK   +RK PGCS
Sbjct: 491 AVARVRLKMKGMDIRKDPGCS 511


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 316/577 (54%), Gaps = 56/577 (9%)

Query: 53  LHQVHSHIIKKGLEQDHS-------LVAHFISLCHSLATPLSYSTAVFNRIVNP--NTFL 103
           L ++H+H +  GL   HS       LVA F     +   PL ++ A+   + +P  + F 
Sbjct: 24  LLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPASPRPLLHALAILASLPSPPDSAFP 83

Query: 104 WNTLLKGYS----QNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAI 158
           +N   +  S    Q+        ++  L+    A PD  TFP +IKAC+ +     G A+
Sbjct: 84  YNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAV 143

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              V + G   DVFV  + +  +  R  ++ AR++FDE P R+VVSW  +I GY   G  
Sbjct: 144 LGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLP 203

Query: 219 VEAKTVFDLMPERSN------------VSWNALIGGL----------------------- 243
            EA  +F  + E  N            VS  A +G L                       
Sbjct: 204 REALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMN 263

Query: 244 ------VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
                 VK G L  A  +F+ +  R  VS+TTMI G+A++G M  AR LF+  P+RDV  
Sbjct: 264 AVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFP 323

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+AL++GY QN Q  EA+ +F +M    V P+E  +V+L+SACSQ+G L++  WV  Y+ 
Sbjct: 324 WNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYID 383

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           R  + LS A +  +LVDM AKCGN+ +A  +F  +P ++ +++ SMI GL+ HGH  +A+
Sbjct: 384 RHKLHLSVA-LGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAI 442

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
             F RM+  GL PDE+ F  VL+AC H GLVE G +FF  M   Y +    +HY+CM+DL
Sbjct: 443 EYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDL 502

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR GHL  A +L+N+MP++P A  WGAL  AC+++ +I LGE  A +L EL+P ++G Y
Sbjct: 503 LGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIY 562

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           VLL+N+YA A+       VR  M+  G+ K+PGCS +
Sbjct: 563 VLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCI 599


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 316/561 (56%), Gaps = 56/561 (9%)

Query: 17  SSMLPNCSRSAPINF-PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHF 75
           +S + N +R+   NF P+P  +LS       CK    L Q+H+  IK G  QD    A  
Sbjct: 2   NSTIYNPNRT--FNFSPQPPLILS--KPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEV 57

Query: 76  ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ-NSRFI--EVFTIFVRLIREEA 132
           I  C   +  + Y+ AVF ++  PN F WNT+L+  ++ N   +  E   +F  ++ +  
Sbjct: 58  IKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGR 117

Query: 133 V-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
           V P+++TFP V+KAC+    +REG  IH  ++++G  ED FV ++L+ +Y     + CA 
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMY-----VMCA- 171

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
                           M   Y+     +  K V D                     D   
Sbjct: 172 ---------------VMEDAYS-----LFCKNVVDF--------------------DGSC 191

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
             +L     + NVV +  MIDG  ++GD+ SA++LF+  P R VV+W+ +ISGYAQNG  
Sbjct: 192 QMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHF 251

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
            EA+ +F +M S N+ P+   LVS++ A +++G L+L  W+  Y  ++ +++    + +A
Sbjct: 252 IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV-LGSA 310

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           LVDM +KCG++D A ++FET+P R+ +++ ++I   ++HG    A+  F  M   G+TP+
Sbjct: 311 LVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPN 370

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           +VA+  +L+ACSH GLVE+G  FF  M  V  + P  EHY CMVDLLGR GHL+ A EL+
Sbjct: 371 DVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELI 430

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MP+EP    W ALLGACK++ ++++GE VA  L EL P ++GSYV LSN+YA+   W 
Sbjct: 431 RNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWE 490

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
            V  VR KMK   +RK PGCS
Sbjct: 491 AVARVRLKMKGMDIRKDPGCS 511


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 318/564 (56%), Gaps = 41/564 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           LI +C     L  VH+ II  GL      +   +S    L   L Y+  +F++I  PN F
Sbjct: 42  LIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQL-RDLRYAHKLFDQIPQPNKF 100

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           ++N L+KGYS +S  I+   ++ R++ +  +P+++T P V+KAC+       G  +HA  
Sbjct: 101 MFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQS 160

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            + G+     V  +++++Y     I+ AR+VFD++ ER +VSW +MI GY+ +G   EA 
Sbjct: 161 FKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAV 220

Query: 223 TVFDLMPERS---------------------------------------NVSWNALIGGL 243
            +F  M E                                         ++  NAL+   
Sbjct: 221 LMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMY 280

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            K G+L+ A+ +FD+M +++VVS+T MI+ YA  G +  A   F   P ++VV+W+++I 
Sbjct: 281 AKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIW 340

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
            + Q G   EAV +F  MC   V  ++  LV+++S+CS +G+L L     SY+  +++ L
Sbjct: 341 CHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITL 400

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S A +  A++DM AKCG +  A ++F  MP ++ VS+  +I  L++HG+G++A+ +F++M
Sbjct: 401 S-ATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKM 459

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
            + G+ PDE+ FT +L+ACSH GLV+ G  +FE M   + I P  EHYACMVDLLGR G 
Sbjct: 460 QASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGL 519

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L  A  L+  MPV+P    W ALLGAC+ Y ++ +G+ +  +L EL   N+G YVLLSN+
Sbjct: 520 LGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNM 579

Query: 544 YATADRWLDVCLVRSKMKERGLRK 567
           Y+ + RW D+  +   + + G++K
Sbjct: 580 YSESQRWDDMKNIWKILDQNGIKK 603


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 328/575 (57%), Gaps = 30/575 (5%)

Query: 12  KHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL 71
           KHK   ++  N + S       P  LL  L+L+K+C     L Q+H+      + + + L
Sbjct: 5   KHKIFKTINTNTNHS-------PIFLL--LSLLKQCPSTKTLQQIHTQFTIHSIHKPNHL 55

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIV-NPNTFLWNTLLKGYSQN-SRFIEVFTIFVRLIR 129
           ++  ISL        +YST +F+ I  +PN + +N +L+  +     +     ++ ++  
Sbjct: 56  LSQSISL-----KDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKT 110

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
               P+ +TFP V  AC+++  +R     H  V + G+D D     S++ +Y +  E   
Sbjct: 111 LNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGV 170

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN-----VSWNALIGGLV 244
           ARKVFDE+ E+++VSW +++ GYA +G   EA  VF  + E S      +S  +++G   
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230

Query: 245 KIGDLRSARQLFDEMPER--NVVSY--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
           ++GDL   R +   + ER   V SY  + +I  Y+K G++ S+R +F+  P RD + W+A
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
            IS YAQNG  DEA+ +F  M    V P++  L +++SAC+ +G LDL   +D Y   +H
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY--ATH 348

Query: 361 MDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             L     +A AL+DM AKCG+++ A  +F  MP ++  S+ +MI  L+ HG  ++A+SL
Sbjct: 349 RGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSL 408

Query: 420 FDRMLSEGLT--PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           F+RM  EG +  P+++ F  +L+AC H GLV++G+R F+ M  ++ +VP  EHY+CMVDL
Sbjct: 409 FERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDL 468

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           L R GHL  A++++  MP +P     GAL  AC+   ++++GE V   L EL+P N+G+Y
Sbjct: 469 LSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNY 528

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++ S IY   + W D   +R+ M+E G+ K PGCS
Sbjct: 529 IISSKIYENLNMWDDAARMRALMRENGVTKTPGCS 563


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 324/572 (56%), Gaps = 43/572 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHS-LVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           L+++C     L+Q+H+H++  G++   S ++A + +L       + Y+  +F+RI +P+ 
Sbjct: 18  LLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCAL--PAGGGVWYARQLFDRIPDPDR 75

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F++N+L++ Y  +    E   +   +IR   +P+++T P ++KAC+ V +       H  
Sbjct: 76  FVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGV 135

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           V++ G    VFVG +L+  Y     +  +R+ FDEM +RNVVSW +MI GYA  G+  EA
Sbjct: 136 VVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREA 195

Query: 222 KTVFDLMPERS-------------------NVSW--------------------NALIGG 242
            ++F+ M  +                    N+ +                    NAL+  
Sbjct: 196 CSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDM 255

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
             K GDL  A   FD MP +N VS+T+M+   AK   + +AR  FE  P++ +++W+A+I
Sbjct: 256 YGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMI 315

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           S Y Q G+  EA+ +++ M    + PDEF L +++SAC Q+G+L     +   + R +  
Sbjct: 316 SCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCI-RDNFH 374

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
                +  +L+DM A+CG +D A  LF  MP+++V+S+ ++I  L++HG  + A+  F  
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M+S+   PDE+ F  +L+AC+H GL+E G  +F+AM++VY + P  EHYACMVDLLGR G
Sbjct: 435 MVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
            L  A +L+  MP+ P    WGALLGAC+++  I++G+ V  +L ELE  + G +VL+SN
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +     +W D+  +R  M+E G++K  G SS+
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSI 586


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/586 (35%), Positives = 323/586 (55%), Gaps = 66/586 (11%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P+  P  S     L+ +++ K      Q+H+HIIK           HF    H+L  PL+
Sbjct: 40  PLQTPPTSPSQHDLSTLEQTK------QIHAHIIK----------THF---HHALQIPLN 80

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
                F   ++P+   WN ++  Y++ ++      ++ +L + +   D +  P V+KAC 
Sbjct: 81  D----FPSGLSPSA-QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACG 135

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            V   + G  IH  V++ G+D DVFVG +L+ +YG+   +  AR VFD+M ER+VVSW+ 
Sbjct: 136 QVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWST 195

Query: 208 MIVG-----------------------------------YASVGDLVEAKTVFDLMPERS 232
           MI                                     +A   ++   K +   +   S
Sbjct: 196 MIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNS 255

Query: 233 N------VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           N       +  AL+    K G L  ARQLF+ + ++ VVS+T MI G  +   +  AR+L
Sbjct: 256 NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARAL 315

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F++  +RDV+ W+A++S YAQ    D+A  +F  M +  V+P +  +VSL+S C+  G L
Sbjct: 316 FDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGAL 375

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           DL  WV SY+ +  +++    +  ALVDM AKCG+++ A  LF    +RD+  + ++I G
Sbjct: 376 DLGKWVHSYIDKERVEVD-CILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITG 434

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            ++HG+G +A+ +F  M  +G+ P+++ F  +L ACSH GLV +G + FE M + + +VP
Sbjct: 435 FAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVP 494

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHY CMVDLLGR G L  A+E++ SMP++P+   WGAL+ AC+L+ + +LGEL A +L
Sbjct: 495 QIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQL 554

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E+EP+N G  VL+SNIYA A+RW D   VR  MK  G++K PG S
Sbjct: 555 LEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHS 600


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/535 (36%), Positives = 300/535 (56%), Gaps = 37/535 (6%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNP 99
           +L+  C+   +L QVH+++ K GL+ D  ++A  + L  +++ P  L Y+  +F    NP
Sbjct: 10  SLLTNCRSLKNLKQVHAYVCKTGLDTD-PIIAGKLLLHSAVSVPDALDYARRLFLHFPNP 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAI 158
           + F+ NTL++G +++         FV + R    P D ++F  ++KA +   S+  G  +
Sbjct: 69  DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQL 128

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   I  G+D  +FVGT+L+ +Y                               +  G +
Sbjct: 129 HCQAIVHGLDTHLFVGTTLVSMY-------------------------------SECGFV 157

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             AK VF+ M E + V+WNA++    + GD++ A  +F+ MP RN+ S+  M+ GY K G
Sbjct: 158 AFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAG 217

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++  AR LF   P +D V+WS +I G+A NG   EA   F ++    ++P+E  L   +S
Sbjct: 218 ELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALS 277

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDV 397
           AC+  G ++    +  ++ +S   L    V  AL+D  +KCGN+  A  +FE MP  R +
Sbjct: 278 ACADAGAIEFGKILHGFIEKSGF-LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSI 336

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ SMI GL++HG+G +A+ LF  M   G+ PD +AF  +L ACSH GL+E G+ +F  
Sbjct: 337 VSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYK 396

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+++Y I P+ EHY CMVDL GR G L  AYE +  MPV P A  W  LLGAC ++ +++
Sbjct: 397 MKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVK 456

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L E V  RL EL+P N+G +VLLSNIYA A +W DV  VR  M ++ + K PG S
Sbjct: 457 LAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWS 511


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 297/529 (56%), Gaps = 45/529 (8%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           S  +F+ +   +   WN+++ G++Q+ RF E    FVR+ R++ V + Y+F   + ACS 
Sbjct: 109 SAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSR 168

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  ++ G  IH  + +     DVF+G+ LID Y K   + CAR+VFD M E+NVVSW  +
Sbjct: 169 LKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCL 228

Query: 209 IVGYASVGDLVEAKTVFDLMPE-------------------------------------- 230
           I  Y   G  +EA   F  M E                                      
Sbjct: 229 ITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDK 288

Query: 231 -RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
            R++ +  NAL+    K G +  AR +FD MP RN VS TTM+ GYAK   + +ARS+F 
Sbjct: 289 FRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFA 348

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
               +D+V+W+ALI+GY QNG+ +EA+ +F  +  ++V P  +   +L++A + + +L+L
Sbjct: 349 TIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLEL 408

Query: 349 SNWVDSYLSRSHMDLSRAH-----VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
                S++ +              V  +L+DM  KCG+++    +FE M  +D VS+ +M
Sbjct: 409 GRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTM 468

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + +G+G +A+ LF +ML  G  PD V     L ACSH GLVE+G R+F +M   + 
Sbjct: 469 IIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHG 528

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           ++P  +HY CMVDLLGR G L+ A +L+ SMP +P A  W +LL ACK++ +I LG+ VA
Sbjct: 529 LLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVA 588

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++FE++P ++G YVLL+N+Y+   RW D   VR  M+ RG+ K PGCS
Sbjct: 589 EKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCS 637



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 189/420 (45%), Gaps = 51/420 (12%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           LSA + +K  KL     Q+H  I K     D  + +  I   +S    +  +  VF+ + 
Sbjct: 163 LSACSRLKDLKLGA---QIHGLISKSKYSLDVFMGSGLIDF-YSKCGLVGCARRVFDGME 218

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
             N   WN L+  Y QN   IE    F R+      PD+ T   V+ AC+ + + +EG  
Sbjct: 219 EKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQ 278

Query: 158 IHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           IHA V++      D+ +G +L+D+Y K   ++ AR VFD MP RN VS T M+ GYA   
Sbjct: 279 IHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSA 338

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIG----------------------------- 247
            +  A+++F  + ++  VSWNALI G  + G                             
Sbjct: 339 SVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLN 398

Query: 248 ------DLRSARQL----------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
                 DL   RQ           F    E ++    ++ID Y K G +     +FE   
Sbjct: 399 ASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMV 458

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           ++D V+W+ +I GYAQNG   EA+++F  M     +PD   ++  + ACS  G ++    
Sbjct: 459 EKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRR 518

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIH 410
               +++ H  L        +VD+  + G ++ A +L E+MP + D V + S++    +H
Sbjct: 519 YFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVH 578



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 202/456 (44%), Gaps = 92/456 (20%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D   F  ++  C  + S R+  ++H  +I+    E+VF+   LID+YGK   +  ARKVF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV---------- 244
           D M ERNV S+ ++I      G + E+  +F LMPE+   SWN++I G            
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 245 -------------------------KIGDLRSARQLFDEMPER----NVVSYTTMIDGYA 275
                                    ++ DL+   Q+   + +     +V   + +ID Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G +  AR +F+   +++VV+W+ LI+ Y QNG   EA++ F  M     +PDE  L S
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFETMP 393
           ++SAC+ +        + + + +S  D  R  +I   ALVDM AKCG ++ A  +F+ MP
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKS--DKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320

Query: 394 NR-------------------------------DVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            R                               D+VS+ ++I G + +G   +A+ LF  
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380

Query: 423 MLSEGLTPDEVAFTIVLTAC-----------SHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
           +  E + P    F  +L A            +H  +V+ G+RF    +    +  S    
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNS---- 436

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
             ++D+  + G ++    +  +M  + H S W  ++
Sbjct: 437 --LIDMYMKCGSVEEGLRVFENMVEKDHVS-WNTMI 469



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 15/282 (5%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N LI    K G L  AR++FD M ERNV S+ ++I    + G +  +  LF   P++D  
Sbjct: 63  NRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQC 122

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+++I+G+AQ+ + +EA+  F  M   +   +++   S +SACS++ +L L   +   +
Sbjct: 123 SWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLI 182

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           S+S   L    + + L+D  +KCG +  A  +F+ M  ++VVS+  +I     +G   +A
Sbjct: 183 SKSKYSLD-VFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEA 241

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA---- 472
           +  F RM   G  PDEV    V++AC+ +   ++G +       ++A V   + +     
Sbjct: 242 LEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQ-------IHARVVKSDKFRNDLI 294

Query: 473 ---CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
               +VD+  + G +  A  + + MPV    S    + G  K
Sbjct: 295 LGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAK 336


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 328/575 (57%), Gaps = 30/575 (5%)

Query: 12  KHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL 71
           KHK   ++  N + S       P  LL  L+L+K+C     L Q+H+      + + + L
Sbjct: 5   KHKIFKTINTNTNHS-------PIFLL--LSLLKQCPSTKTLQQIHTQFTIHSIHKPNHL 55

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIV-NPNTFLWNTLLKGYSQN-SRFIEVFTIFVRLIR 129
           ++  ISL        +YST +F+ I  +PN + +N +L+  +     +     ++ ++  
Sbjct: 56  LSQSISL-----KDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKT 110

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
               P+ +TFP V  AC+++  +R     H  V + G+D D     S++ +Y +  E   
Sbjct: 111 LNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGV 170

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN-----VSWNALIGGLV 244
           ARKVFDE+ E+++VSW +++ GYA +G   EA  VF  + E S      +S  +++G   
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230

Query: 245 KIGDLRSARQLFDEMPER--NVVSY--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
           ++GDL   R +   + ER   V SY  + +I  Y+K G++ S+R +F+  P RD + W+A
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
            IS YAQNG  DEA+ +F  M    V P++  L +++SAC+ +G LDL   +D Y   +H
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY--ATH 348

Query: 361 MDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             L     +A AL+DM AKCG+++ A  +F  MP ++  S+ +MI  L+ HG  ++A+SL
Sbjct: 349 RGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSL 408

Query: 420 FDRMLSEGLT--PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           F+RM  EG +  P+++ F  +L+AC H GLV++G+R F+ M  ++ +VP  EHY+CMVDL
Sbjct: 409 FERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDL 468

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           L R GHL  A++++  MP +P     GAL  AC+   ++++GE V   L EL+P N+G+Y
Sbjct: 469 LSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNY 528

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++ S IY   + W D   +R+ M+E G+ K PGCS
Sbjct: 529 IISSKIYENLNMWDDAARMRALMRENGVTKTPGCS 563


>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
 gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
          Length = 529

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/389 (48%), Positives = 258/389 (66%), Gaps = 3/389 (0%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I+ AR +F+ MPER+VVSW +M+ G A  G L EA  +FD MPE +  SWNAL+ G + 
Sbjct: 137 DITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSGFMA 196

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  A++LF+ MP RN VS+ TMI GYAK GD+ +A +LF+    +D+ AW+A+IS Y
Sbjct: 197 QGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCY 256

Query: 306 AQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           AQNG   EA+ IF+ M   +  V P+E    S++SACSQ+G+L    WV+S++    + L
Sbjct: 257 AQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYVGVHL 316

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
              H+  AL+D+  K G MDRA +LF  + +RDVVSY +MI G  +HG   +A+SLF  M
Sbjct: 317 DD-HLRTALIDLYTKSGQMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEM 375

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
               + P+ V F  +L+A SH GL+E+    F +M + Y I PS EHY  MVD+LGR G 
Sbjct: 376 SKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGK 435

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L+ A++L+  +PV PHAS WGALL AC+L+++IELGE+ A++ FELEP+ +G Y+LL NI
Sbjct: 436 LEEAFQLIMQIPVCPHASVWGALLLACRLHNNIELGEVAASKCFELEPKESGYYILLGNI 495

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YA A +W  V  +R  M ERGL K PG S
Sbjct: 496 YAQAKKWDKVKGLRKMMAERGLSKTPGSS 524



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 141/353 (39%), Gaps = 82/353 (23%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  ++ + A+F  +   +   WN+++ G ++     E   +F ++    A          
Sbjct: 135 AGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAA--------- 185

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                                 W          +L+  +  +  ++ A+++F+ MP RN 
Sbjct: 186 ---------------------SW---------NALVSGFMAQGHLAQAQELFERMPIRNN 215

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM--- 259
           VSW  MI GYA  GD+  A  +FD M  +   +WNA+I    + G  R A  +F+ M   
Sbjct: 216 VSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKP 275

Query: 260 -----PERNVVS---------------------------------YTTMIDGYAKVGDMT 281
                P     S                                  T +ID Y K G M 
Sbjct: 276 HIWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYVGVHLDDHLRTALIDLYTKSGQMD 335

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            A  LF     RDVV++SA+I G   +G+ +EA+ +F +M    + P+    V L+SA S
Sbjct: 336 RAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAYS 395

Query: 342 QVGNLDLSNW-VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             G L+ +     S  S+  ++ S  H    +VD+  +CG ++ A +L   +P
Sbjct: 396 HAGLLEEARACFTSMSSKYKINPSMEHYT-IMVDILGRCGKLEEAFQLIMQIP 447



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 41/176 (23%)

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM----------LSEG 427
           + G++  A  +FE MP RDVVS+ SM+ GL+  GH  +A+ LFD+M          L  G
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSG 193

Query: 428 LTP-----------------DEVAFTIVLTACSHVGLVEDGWRFFEAM--QNVYAIVPSP 468
                               + V++  +++  +  G V+     F+ M  +++YA     
Sbjct: 194 FMAQGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSKDLYA----- 248

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMP-----VEPHASAWGALLGACKLYSDIELG 519
             +  M+    + G  + A  + N M      V P+   + +++ AC    D+  G
Sbjct: 249 --WNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFG 302


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 322/582 (55%), Gaps = 53/582 (9%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV-- 97
            + L+ +CK    + ++H+ +I  GL ++ +L    +      A+P  Y  A F R+V  
Sbjct: 18  TIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIV--LAFAASPRPY-LAEFARLVFR 74

Query: 98  -------NP-----NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
                  +P     + FLWN ++K +S      +   +F  ++      DK++  LV+KA
Sbjct: 75  EYHVCSSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKA 134

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS +  V+ G  IH  + + G+  D+F+   LI LY K   +  AR++FD MP+R+ VS+
Sbjct: 135 CSRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSF 194

Query: 206 TAMIVGYASVGDLVEAKTVFDLMP----------------------------------ER 231
            +MI GY   G +  A+ +FDLMP                                  E+
Sbjct: 195 NSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEK 254

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
             +SWN++I G VK G +  A+ LFD MP R+VV++ TMIDGYAK+G +  A++LF+  P
Sbjct: 255 DLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP 314

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSN 350
            RDVV+++++++GY QN    EA++IFSDM  + ++ PDE  LV ++SA +Q+G L  + 
Sbjct: 315 HRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM 374

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            +  Y+      L    +  AL+DM +KCG++  A  +FE + N+ +  + +MI GL+IH
Sbjct: 375 DMHLYIVEKQFFLG-GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIH 433

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G  A  +  ++    + PD++ F  VL ACSH GLV++G   FE M+  + I P  +H
Sbjct: 434 GLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 493

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y CMVD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E GELV   L    
Sbjct: 494 YGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQA 553

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             N  SYVLLSN+YA+  +W DV  +R+ MKER + KIPGCS
Sbjct: 554 GYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCS 595



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 10/240 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H +I++K       L    I + +S    + ++  
Sbjct: 352 PDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDM-YSKCGSIQHAML 410

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I N +   WN ++ G + +      F + +++ R    PD  TF  V+ ACSH   
Sbjct: 411 VFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGL 470

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ +  EMP E N V W   +
Sbjct: 471 VKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFL 530

Query: 210 VG-----YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
                      G+LV    +  L    +  S+  L       G  +  R++   M ER +
Sbjct: 531 TACNHHKEFETGELVGKHLI--LQAGYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKI 588


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/516 (36%), Positives = 305/516 (59%), Gaps = 37/516 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS + A+FN++   +   WN +L G++QN    E   IF +++    V ++ ++  ++ A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLSA 193

Query: 146 CSHVLSVREGTAIHAAVIRWGV----------------DE-----------DVFVGTSLI 178
                 + +   +  + + W +                D+           D      +I
Sbjct: 194 YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMI 253

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA 238
             Y +   +S AR++F+E+P R+V +WTAM+ G+   G L EA  +F+ MPE++ VSWNA
Sbjct: 254 TGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNA 313

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           +I G V+   +  AR+LFD+MP RN  S+ TM+ GYA+ G++  A+ LF+  P RD ++W
Sbjct: 314 MIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISW 373

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+ISGYAQ+GQ +EA+ +F  M       +   L   +S+C+++  L+L   +   L +
Sbjct: 374 AAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK 433

Query: 359 SHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           +     +   IA  AL+ M  KCG+++ A ++FE +  +D+VS+ +MI G + HG G++A
Sbjct: 434 AGF---QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           ++LF+ M    + PD+V    VL+ACSH GLV+ G  +F +M   Y I  + +HY CM+D
Sbjct: 491 LALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           LLGR G L  A  L+ SMP  P A+ WGALLGA +++ D ELGE  A ++FE+EP N+G 
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YVLLSN+YA + RW +V  +RSKM+++G++K+PG S
Sbjct: 610 YVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYS 645



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 214/424 (50%), Gaps = 29/424 (6%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           +VFN +   +T  +N ++ GY  N++F     +F      E +PD+      +    +V 
Sbjct: 81  SVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF------EKMPDRDLISWNVMLSGYVK 134

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +     A   A+     ++DV    +++  + +   +  ARK+FD+M  +N +SW  ++ 
Sbjct: 135 NGNLSAA--RALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLS 192

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
            Y   G + +A+ +FD   +   VSWN L+GG V+   L  AR LFD MP R+ +S+  M
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIM 252

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I GYA+ G ++ AR LFE  P RDV AW+A++SG+ QNG  DEA +IF +M  KN    E
Sbjct: 253 ITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN----E 308

Query: 331 FILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
               ++++   Q   ++ +  + D   SR+    +       +V   A+CGN+D+A  LF
Sbjct: 309 VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWN------TMVTGYAQCGNIDQAKILF 362

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + MP RD +S+ +MI G +  G   +A+ LF +M  +G   +  A    L++C+ +  +E
Sbjct: 363 DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALE 422

Query: 450 DG----WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
            G     R  +A      I  +      ++ + G+ G ++ A+++   +  E    +W  
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGN-----ALLAMYGKCGSIEEAFDVFEDI-TEKDIVSWNT 476

Query: 506 LLGA 509
           ++  
Sbjct: 477 MIAG 480



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 187/371 (50%), Gaps = 36/371 (9%)

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           ++V W   I  Y   G    A +VF+ M  RS V++NA+I G +       AR++F++MP
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           +R+++S+  M+ GY K G++++AR+LF   P++DVV+W+A++SG+AQNG  +EA KIF  
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  KN    E     L+SA  Q G ++ +      L  S MD         +V  N   G
Sbjct: 179 MLVKN----EISWNGLLSAYVQNGRIEDAR----RLFDSKMDWE-------IVSWNCLMG 223

Query: 381 N------MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
                  +D A  LF+ MP RD +S+  MI G + +G   +A  LF+ +       D  A
Sbjct: 224 GYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PIRDVFA 279

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           +T +++     G++++  R FE M     +      +  M+    ++  ++ A EL + M
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQM 334

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYATADRWLDV 553
           P   + S+W  ++       +I+  ++    LF+  PQ +  S+  + + YA + +  + 
Sbjct: 335 P-SRNTSSWNTMVTGYAQCGNIDQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEA 389

Query: 554 CLVRSKMKERG 564
             +  KMK  G
Sbjct: 390 LHLFIKMKRDG 400



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 184/385 (47%), Gaps = 34/385 (8%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           VD D+      I  Y ++ +   A  VF+ M  R+ V++ AMI GY S      A+ VF+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            MP+R  +SWN ++ G VK G+L +AR LF++MPE++VVS+  M+ G+A+ G +  AR +
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD---------------MCSKNVQPDEF 331
           F+    ++ ++W+ L+S Y QNG+ ++A ++F                    K    D  
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDAR 235

Query: 332 ILVSLMSACSQVG-NLDLSNWVDSYL----SRSHMDLSRAHVIA--ALVDMNAKCGNMDR 384
            L   M    ++  N+ ++ +  + L     R   +L    V A  A+V    + G +D 
Sbjct: 236 SLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDE 295

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +FE MP ++ VS+ +MI G        +A  LFD+M S   +    ++  ++T  + 
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS----SWNTMVTGYAQ 351

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP---HAS 501
            G ++     F+ M     I      +A M+    ++G  + A  L   M  +    + S
Sbjct: 352 CGNIDQAKILFDEMPQRDCI-----SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRS 406

Query: 502 AWGALLGACKLYSDIELGELVANRL 526
           A    L +C   + +ELG+ +  RL
Sbjct: 407 ALACALSSCAEIAALELGKQLHGRL 431



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 160/331 (48%), Gaps = 30/331 (9%)

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           +E+K     + +   V WN  I   ++ G   SA  +F+ M  R+ V+Y  MI GY    
Sbjct: 46  LESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNN 105

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
               AR +FE  PDRD+++W+ ++SGY +NG    A  +F+ M  K+V        +++S
Sbjct: 106 KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS----WNAMLS 161

Query: 339 ACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
             +Q G ++ +  + D  L ++  ++S   +++A V    + G ++ A  LF++  + ++
Sbjct: 162 GFAQNGFVEEARKIFDQMLVKN--EISWNGLLSAYV----QNGRIEDARRLFDSKMDWEI 215

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+  ++ G         A SLFDRM       D++++ I++T  +  GL+ +  R FE 
Sbjct: 216 VSWNCLMGGYVRKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEE 271

Query: 458 M--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           +  ++V+A       +  MV    + G L  A  +   MP E +  +W A++        
Sbjct: 272 LPIRDVFA-------WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQ 323

Query: 516 IELGELVANRLFELEP-QNAGSYVLLSNIYA 545
           IE     A  LF+  P +N  S+  +   YA
Sbjct: 324 IE----KARELFDQMPSRNTSSWNTMVTGYA 350


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 312/583 (53%), Gaps = 49/583 (8%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPL-SYSTAVFNR 95
           +  L L+KKCK  + ++Q+H+ ++  G  ++  L    I S   SL  PL  ++  +F R
Sbjct: 16  IPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFR 75

Query: 96  -----------IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
                          + FLWN ++K YS      E   +   ++   A  DK+T  LV+K
Sbjct: 76  HHAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLK 135

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ACS V  V+EG  IH  + +     D+F+   LI  Y K   +  A +VFD MP+R+ VS
Sbjct: 136 ACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVS 195

Query: 205 WTAMIVGYASVGDLVEAKTVFDL----------------------------------MPE 230
           + +MI GY   G +  A+ VFD                                   MPE
Sbjct: 196 YNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPE 255

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           R  +SWN++I G VK G +  A+ LFD MP R++VS+  MIDGYAK G +  ARSLF+  
Sbjct: 256 RDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEM 315

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLS 349
           P+RDVVA++A++ GY QNG   EA+ IF  M S  N   D   L+  +SA +Q+G++D  
Sbjct: 316 PERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKG 375

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             +  ++      L    +  AL+DM +KCG+++ A  +FE +  + V  + ++I GL+I
Sbjct: 376 VAIHRFIEEIGFSLD-GRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAI 434

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G  A      M    + PD++ F  +L AC H GLV++G   FE M+ V+ + P  +
Sbjct: 435 HGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQ 494

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HY CMVD+LGR GH++ A   +  MP EP+   W +LL ACK +    +G+ VA  L  L
Sbjct: 495 HYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRL 554

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  +  SYVL SN+YA   +W DV  VR+ MK++ L+KIPGCS
Sbjct: 555 DSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCS 597


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 313/572 (54%), Gaps = 49/572 (8%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           IK  K Q H H + +H  K      + + ++ +S  H     L+ +   F +I  P   +
Sbjct: 70  IKSIKEQ-HAHLIRTHHHKNPKSMSNVIKSYALSRSH-----LNKANFAFIQIGQPTLLI 123

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           +N L++G SQ+    E   ++  L+  + +  D  TF  + KACS V  V  G   H  V
Sbjct: 124 FNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQV 183

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G    +F+  SLI +YG   E+  A+KVFD+M +R++VSW ++I GY+      E  
Sbjct: 184 LKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVL 243

Query: 223 TVFDLMPERSNVS----------------------------------------WNALIGG 242
            +F+LM E +NV+                                         N+LI  
Sbjct: 244 DLFNLMRE-ANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDM 302

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
             + G +  AR++FD M E+N+VS+  M+ GYA  GD+ +A+ LF   P R+V++W+ +I
Sbjct: 303 YGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMI 362

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SG AQ  Q  +A+K+F +M   NV+PDE  + S++SACS +G LD    V  Y+ R H  
Sbjct: 363 SGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR-HDI 421

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            S  +V  AL+DM  KCG +D+A E+F  M  +D VS+ SMI GL+++G       LF +
Sbjct: 422 KSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQ 481

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           ML +GL P   +F  +L AC+H GLV+ G  +FE+M++VY + P  +HY C+VDLL R+G
Sbjct: 482 MLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSG 541

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
            L  AYE +  MPV P    W  LL ACKL+ ++ L E+  ++L EL+P N+G+YVLLSN
Sbjct: 542 ELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSN 601

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            YA +DRW D   +R  M    ++K    SS+
Sbjct: 602 TYAGSDRWDDASRMRDLMVVGDVQKPSSWSSI 633



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 199/401 (49%), Gaps = 49/401 (12%)

Query: 38  LSALTLIKKC-KLQTHLH-QV-HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           L+ + L K C +++  LH QV H  ++K G    +  + + +   +     L Y+  VF+
Sbjct: 158 LTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGS-YLFIENSLIRMYGYFGELGYAQKVFD 216

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVR 153
           ++ + +   WN+L+ GYSQ +RF EV  +F  L+RE  V  D  T   VI ACS++    
Sbjct: 217 KMDDRDLVSWNSLICGYSQCNRFKEVLDLF-NLMREANVTADSVTMVKVILACSYLCEDG 275

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
              ++   +    VD DV++G SLID+YG+R  +  AR+VFD M E+N+VSW AM+ GYA
Sbjct: 276 VVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYA 335

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV------VSY 267
           + GDLV AK +F+ MP R+ +SW  +I G  +      A +LF EM + NV      VS 
Sbjct: 336 TAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSS 395

Query: 268 ---------------------------------TTMIDGYAKVGDMTSARSLFEAAPDRD 294
                                              +ID Y K G +  A  +F     +D
Sbjct: 396 VLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKD 455

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            V+W+++I G A NG  D   ++FS M    +QP     + ++ AC+  G +D    ++ 
Sbjct: 456 SVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVD--KGLEY 513

Query: 355 YLSRSHMDLSRAHV--IAALVDMNAKCGNMDRAAELFETMP 393
           + S  H+   R  +     +VD+ ++ G +DRA E  + MP
Sbjct: 514 FESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMP 554


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 324/537 (60%), Gaps = 5/537 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL--ATPLSYSTAVFNRIVN 98
           L+ ++ C+    L+Q+H  +IK  + ++   ++  I  C +      LSY+ +VF  I  
Sbjct: 10  LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+ ++WN++++GYS +    +    +  ++R+   PD +TFP V+KACS +  ++ G+ +
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V++ G + +++V T L+ +Y    E++   +VF+++P+ NVV+W ++I G+ +    
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
            +A   F  M + + V  N  I   + +   R     F      NV+  T++ID YAK G
Sbjct: 190 SDAIEAFREM-QSNGVKANETIMVDLLVACGRCFDPYFQSKVGFNVILATSLIDMYAKCG 248

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D+ +AR LF+  P+R +V+W+++I+GY+QNG  +EA+ +F DM    + PD+   +S++ 
Sbjct: 249 DLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIR 308

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           A    G   L   + +Y+S++   +  A ++ ALV+M AK G+ + A + FE +  +D +
Sbjct: 309 ASMIQGCSQLGQSIHAYVSKTGF-VKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTI 367

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           ++  +I GL+ HGHG +A+S+F RM  +G  TPD + +  VL ACSH+GLVE+G R+F  
Sbjct: 368 AWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAE 427

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M++++ + P+ EHY CMVD+L R G  + A  L+ +MPV+P+ + WGALL  C ++ ++E
Sbjct: 428 MRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHENLE 487

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L + + + + E E   +G YVLLSNIYA A RW DV L+R  MK + + K+ G SS+
Sbjct: 488 LTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSV 544


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 304/509 (59%), Gaps = 37/509 (7%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV-REGTAIH 159
           TFL N L++  + +      F  F  ++R    PD++TFP ++K+ S + S  R G  +H
Sbjct: 43  TFLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVH 102

Query: 160 AAVIRWGVDEDVFVGTSLIDLYG--------------------------------KRKEI 187
           A  +R G+  DVFV  +L+ +Y                                 K  EI
Sbjct: 103 AQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEI 162

Query: 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVK 245
             AR+VF++MP+RN VSW+AM+  YA  G+L  A+ +FD MP   R+ VSWN++I G  +
Sbjct: 163 GEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFAR 222

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  AR++FDEMP RN+VS+ TM+ GYA  G+M  AR LF+  P++DVV+W+ +ISGY
Sbjct: 223 HGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGY 282

Query: 306 AQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL- 363
           AQ     E +++F  M S+ NV P+E  +VS++SAC+ +  L+   W  +++ +  M L 
Sbjct: 283 AQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLD 342

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S  ++ AAL+DM +KCG  D A ++F ++  ++V ++ ++I GL+++G  R ++ +F++M
Sbjct: 343 SEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQM 402

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
              G  P+ + F  VLTAC+H GLV++G R F++M +   + P  +HY CMVD+LGR G 
Sbjct: 403 RRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGL 462

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L+ A EL+ SMP+ P     GALLGAC+++  +++   V N +  L  Q +G +VL+S+I
Sbjct: 463 LEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDI 522

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YA A +W D    R  +++ G+ K+ G S
Sbjct: 523 YAAAGKWADALYARGVLQKFGISKLRGSS 551



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 33/287 (11%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           +F+R+   +   W  ++ GY+Q   + E   +F  +  E  V P++ T   V+ AC+H+ 
Sbjct: 263 LFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLT 322

Query: 151 SVREGTAIHAAVIRWG--VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           ++ EG   HA + +    +D +  +G +LID+Y K      A K+F  + ++NV +W A+
Sbjct: 323 ALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNAL 382

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALI----------GGLVKIGDLRSARQLFDE 258
           I G A  GD+  +  VF+ M  RS    N +           GGLV  G     R+ F  
Sbjct: 383 ITGLAVNGDVRSSIDVFEQM-RRSGEKPNGITFVGVLTACAHGGLVDEG-----RRCFQS 436

Query: 259 MPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPD 312
           M     V      Y  M+D   + G +  A  L  + P   DV+   AL+     + + D
Sbjct: 437 MASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVD 496

Query: 313 EAVKIFSDMCSKNVQPDE-FILVSLMSACSQVGNLDLSNWVDSYLSR 358
            A ++ +++   + Q     +L+S + A +         W D+  +R
Sbjct: 497 VAARVQNEILGLSTQQSGCHVLISDIYAAA-------GKWADALYAR 536


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 193/532 (36%), Positives = 308/532 (57%), Gaps = 46/532 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F  +  P+   WN+++ G++Q+ RF E    FV++ RE+ + ++Y+F   + A
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ ++ +  GT +HA V +     DV++G++LID+Y K   ++CA +VF  M ERN+V+W
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 206 TAMIVGYASVGDLVEAKTVF------DLMPE----------------------------R 231
            ++I  Y   G   EA  VF       L P+                            +
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 232 SN------VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           +N      V  NAL+    K   +  AR++FD M  RNVVS T+M+ GYA+   + +AR 
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F     R+VV+W+ALI+GY QNG+ +EA+++F  +  +++ P  +   +L+SAC+ + +
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396

Query: 346 LDLSNWVDSYLSRSHMDL-----SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           L L     +++ +   +      S   V  +L+DM  KCG+++  + +FE M  RD VS+
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 456

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I G + +G+G +A+ +F +ML  G  PD V    VL ACSH GLVE+G  +F +M+ 
Sbjct: 457 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE 516

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            + ++P  +HY CMVDLLGR G L  A  L+ +MPV P A  WG+LL ACK++ +IE+G+
Sbjct: 517 -HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGK 575

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             A +L E++P N+G YVLLSN+YA   RW DV  VR  M+++G+ K PGCS
Sbjct: 576 HAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCS 627



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 193/416 (46%), Gaps = 59/416 (14%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           L+R+  +P+   F  ++ +C    S R    +HA ++      ++F+   LID+YGK   
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           +  ARK+FD MP+RN  +W ++I      G L EA  +F  MPE    SWN+++ G  + 
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 247 GDLRSARQLFDEMPERNVV--------------------------------SYTT----- 269
                + + F +M   + +                                 Y+T     
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185

Query: 270 --MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
             +ID Y+K G +  A  +F    +R++V W++LI+ Y QNG   EA+++F  M    ++
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PDE  L S++SAC+ +  L     + + + +++       +  ALVDM AKC  ++ A  
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ M  R+VVS  SM+ G +     + A  +F +M    +    V++  ++   +  G 
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGE 361

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHY-------AC--MVD-LLGRTGH---LKSAYEL 490
            E+  R F  ++   +I P+  HY       AC  + D LLGR  H   LK  +E 
Sbjct: 362 NEEALRLFRLLKR-ESIWPT--HYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF 414



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 164/378 (43%), Gaps = 61/378 (16%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF-----LWNTLLK 109
           +V   ++  GLE D   +A  +S C SL   L     +  R+V  N F     L N L+ 
Sbjct: 234 EVFVRMMDSGLEPDEVTLASVVSACASLCA-LKEGLQIHARVVKTNKFRDDLVLGNALVD 292

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
            Y++ S+  E   +F R                       +S+R                
Sbjct: 293 MYAKCSKVNEARRVFDR-----------------------MSIR---------------- 313

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           +V   TS++  Y +   +  AR +F +M +RNVVSW A+I GY   G+  EA  +F L+ 
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 230 ERS----NVSWNALIGGLVKIGDLRSARQL----------FDEMPERNVVSYTTMIDGYA 275
             S    + ++  L+     + DL   RQ           F    E ++    ++ID Y 
Sbjct: 374 RESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYM 433

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G +     +FE   +RD V+W+A+I GYAQNG   EA++IF  M     +PD   ++ 
Sbjct: 434 KCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIG 493

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-N 394
           ++ ACS  G ++        +    +   + H    +VD+  + G ++ A  L E MP N
Sbjct: 494 VLCACSHAGLVEEGRHYFFSMEEHGLIPLKDH-YTCMVDLLGRAGCLNEAKNLIEAMPVN 552

Query: 395 RDVVSYCSMIKGLSIHGH 412
            D V + S++    +HG+
Sbjct: 553 PDAVVWGSLLAACKVHGN 570



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +  KC       +V   +  + +  + S+V+ +     + A  +  +  +F+++   N  
Sbjct: 293 MYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY-----ARAASVKAARFMFSKMTQRNVV 347

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN L+ GY+QN    E   +F  L RE   P  YTF  ++ AC+++  +  G   H  V
Sbjct: 348 SWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHV 407

Query: 163 IRW------GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           ++       G + D+FVG SLID+Y K   I    +VF++M ER+ VSW A+IVGYA  G
Sbjct: 408 LKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNG 467

Query: 217 DLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV----SYT 268
              EA  +F  M     +  +V+   ++      G +   R  F  M E  ++     YT
Sbjct: 468 YGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYT 527

Query: 269 TMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNG 309
            M+D   + G +  A++L EA P + D V W +L++    +G
Sbjct: 528 CMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 195/527 (37%), Positives = 296/527 (56%), Gaps = 38/527 (7%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATP------LSYSTAVFNRIVNPNTFLWN 105
           L Q+H+ +I  GL  +   +   + +   S+  P      + Y+  +F +I  P+TF+WN
Sbjct: 17  LKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWN 76

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
           T ++G SQ+   +    ++ ++ +    PD +TFP V+KAC+ +  V  G+A+H  V+R 
Sbjct: 77  TYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRL 136

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G   +V V  +L+                               V +A  GDL  A  +F
Sbjct: 137 GFGSNVVVRNTLL-------------------------------VFHAKCGDLKVATDIF 165

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           D   +   V+W+ALI G  + GDL  AR+LFDEMP+R++VS+  MI  Y K G+M SAR 
Sbjct: 166 DDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARR 225

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LF+ AP +D+V+W+ALI GY       EA+++F +MC     PDE  ++SL+SAC+ +G+
Sbjct: 226 LFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGD 285

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+    V + +   +       +  ALVDM AKCGN+ +A  +F  + ++DVVS+ S+I 
Sbjct: 286 LESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVIS 345

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL+ HGH  +++ LF  M    + PDEV F  VL ACSH G V++G R+F  M+N Y I 
Sbjct: 346 GLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIE 405

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+  H  C+VD+LGR G LK A+  + SM +EP+A  W +LLGACK++ D+EL +    +
Sbjct: 406 PTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQ 465

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L  +    +G YVLLSN+YA+   W     VR  M + G+ K  G S
Sbjct: 466 LLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSS 512


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 189/516 (36%), Positives = 304/516 (58%), Gaps = 37/516 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS + A+FN++   +   WN +L G++QN    E   IF +++    V ++ ++  ++ A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----VKNEISWNGLLSA 193

Query: 146 CSHVLSVREGTAIHAAVIRWGV----------------DE-----------DVFVGTSLI 178
                 + +   +  + + W +                D+           D      +I
Sbjct: 194 YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMI 253

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA 238
             Y +   +S AR++F+E+P R+V +WTAM+ G+   G L EA  +F+ MPE++ VSWNA
Sbjct: 254 TGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNA 313

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           +I G V+   +  AR+LFD+MP RN  S+ TM+ GYA+ G++  A+ LF+  P RD ++W
Sbjct: 314 MIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISW 373

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+ISGYAQ+GQ +EA+ +F  M       +   L   +S+C+++  L+L   +   L +
Sbjct: 374 AAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK 433

Query: 359 SHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           +     +   IA  AL+ M  KCG+++ A ++FE +  +D+VS+ +MI G + HG G++A
Sbjct: 434 AGF---QTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           ++LF+ M    + PD+V    VL+ACSH G V+ G  +F +M   Y I  + +HY CM+D
Sbjct: 491 LALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMID 549

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           LLGR G L  A  L+ SMP  P A+ WGALLGA +++ D ELGE  A ++FE+EP N+G 
Sbjct: 550 LLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGM 609

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YVLLSN+YA + RW +V  +RSKM+++G++K+PG S
Sbjct: 610 YVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYS 645



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 214/424 (50%), Gaps = 29/424 (6%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           +VFN +   +T  +N ++ GY  N++F     +F      E +PD+      +    +V 
Sbjct: 81  SVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF------EKMPDRDLISWNVMLSGYVK 134

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +     A   A+     ++DV    +++  + +   +  ARK+FD+M  +N +SW  ++ 
Sbjct: 135 NGNLSAA--RALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLS 192

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
            Y   G + +A+ +FD   +   VSWN L+GG V+   L  AR LFD MP R+ +S+  M
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIM 252

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I GYA+ G ++ AR LFE  P RDV AW+A++SG+ QNG  DEA +IF +M  KN    E
Sbjct: 253 ITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN----E 308

Query: 331 FILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
               ++++   Q   ++ +  + D   SR+    +       +V   A+CGN+D+A  LF
Sbjct: 309 VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWN------TMVTGYAQCGNIDQAKILF 362

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + MP RD +S+ +MI G +  G   +A+ LF +M  +G   +  A    L++C+ +  +E
Sbjct: 363 DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALE 422

Query: 450 DG----WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
            G     R  +A      I  +      ++ + G+ G ++ A+++   +  E    +W  
Sbjct: 423 LGKQLHGRLVKAGFQTGYIAGN-----ALLAMYGKCGSIEEAFDVFEDI-TEKDIVSWNT 476

Query: 506 LLGA 509
           ++  
Sbjct: 477 MIAG 480



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 187/371 (50%), Gaps = 36/371 (9%)

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           ++V W   I  Y   G    A +VF+ M  RS V++NA+I G +       AR++F++MP
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           +R+++S+  M+ GY K G++++AR+LF   P++DVV+W+A++SG+AQNG  +EA KIF  
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  KN    E     L+SA  Q G ++ +      L  S MD         +V  N   G
Sbjct: 179 MLVKN----EISWNGLLSAYVQNGRIEDAR----RLFDSKMDWE-------IVSWNCLMG 223

Query: 381 N------MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
                  +D A  LF+ MP RD +S+  MI G + +G   +A  LF+ +       D  A
Sbjct: 224 GYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PIRDVFA 279

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           +T +++     G++++  R FE M     +      +  M+    ++  ++ A EL + M
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIEKARELFDQM 334

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYATADRWLDV 553
           P   + S+W  ++       +I+  ++    LF+  PQ +  S+  + + YA + +  + 
Sbjct: 335 P-SRNTSSWNTMVTGYAQCGNIDQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEA 389

Query: 554 CLVRSKMKERG 564
             +  KMK  G
Sbjct: 390 LHLFIKMKRDG 400



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 184/385 (47%), Gaps = 34/385 (8%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           VD D+      I  Y ++ +   A  VF+ M  R+ V++ AMI GY S      A+ VF+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            MP+R  +SWN ++ G VK G+L +AR LF++MPE++VVS+  M+ G+A+ G +  AR +
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKI 175

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD---------------MCSKNVQPDEF 331
           F+    ++ ++W+ L+S Y QNG+ ++A ++F                    K    D  
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDAR 235

Query: 332 ILVSLMSACSQVG-NLDLSNWVDSYL----SRSHMDLSRAHVIA--ALVDMNAKCGNMDR 384
            L   M    ++  N+ ++ +  + L     R   +L    V A  A+V    + G +D 
Sbjct: 236 SLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDE 295

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +FE MP ++ VS+ +MI G        +A  LFD+M S   +    ++  ++T  + 
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS----SWNTMVTGYAQ 351

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP---HAS 501
            G ++     F+ M     I      +A M+    ++G  + A  L   M  +    + S
Sbjct: 352 CGNIDQAKILFDEMPQRDCI-----SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRS 406

Query: 502 AWGALLGACKLYSDIELGELVANRL 526
           A    L +C   + +ELG+ +  RL
Sbjct: 407 ALACALSSCAEIAALELGKQLHGRL 431



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 160/331 (48%), Gaps = 30/331 (9%)

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           +E+K     + +   V WN  I   ++ G   SA  +F+ M  R+ V+Y  MI GY    
Sbjct: 46  LESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNN 105

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
               AR +FE  PDRD+++W+ ++SGY +NG    A  +F+ M  K+V        +++S
Sbjct: 106 KFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS----WNAMLS 161

Query: 339 ACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
             +Q G ++ +  + D  L ++  ++S   +++A V    + G ++ A  LF++  + ++
Sbjct: 162 GFAQNGFVEEARKIFDQMLVKN--EISWNGLLSAYV----QNGRIEDARRLFDSKMDWEI 215

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+  ++ G         A SLFDRM       D++++ I++T  +  GL+ +  R FE 
Sbjct: 216 VSWNCLMGGYVRKKRLDDARSLFDRM----PVRDKISWNIMITGYAQNGLLSEARRLFEE 271

Query: 458 M--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           +  ++V+A       +  MV    + G L  A  +   MP E +  +W A++        
Sbjct: 272 LPIRDVFA-------WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQ 323

Query: 516 IELGELVANRLFELEP-QNAGSYVLLSNIYA 545
           IE     A  LF+  P +N  S+  +   YA
Sbjct: 324 IE----KARELFDQMPSRNTSSWNTMVTGYA 350


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 196/547 (35%), Positives = 309/547 (56%), Gaps = 14/547 (2%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L LI+ C     L Q+H+  I   L     ++   I+   S A  L Y+T VFN+   
Sbjct: 8   SVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHAC-LDYATQVFNQTQE 66

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTA 157
           P+ F++N +++ YS +       +I+ ++   +  + DKYT+P V KAC+   +V +G  
Sbjct: 67  PDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKE 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  ++R G + D F+ +SL++ Y    EI  A++VFDE   ++VV W A+I GYA  G 
Sbjct: 127 VHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGM 186

Query: 218 LVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPERNVVSY----- 267
           ++++  VF  M E   V  N      LI   ++  +L+  R +   M +  V+       
Sbjct: 187 VLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLE 246

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
             +I+ Y K G +  AR LF+  P+++ V W++LI GY Q G  +E +++  +M   N++
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PD F +  ++SAC+Q+G  +L NWV  +  +    +    +  AL+DM AKCG +  A +
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKK--GIWDVFIGTALIDMYAKCGFIGAARK 364

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ M  R+V ++ +++ G + HG    A+ LF  M   G  PD + F  VL AC+H GL
Sbjct: 365 VFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGL 424

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           VE+G ++F+ M   Y I P  EHY CMVDLLGR G L+ A EL+  M VEP+   WGALL
Sbjct: 425 VENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALL 484

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            AC ++ +IE+GE  A+ + +L   + GSYV+L+N+YA+A R+  V  VR  M E+G+ K
Sbjct: 485 SACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICK 544

Query: 568 IPGCSSL 574
             GCS +
Sbjct: 545 SHGCSMI 551


>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
          Length = 565

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 176/440 (40%), Positives = 285/440 (64%), Gaps = 2/440 (0%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF-VGTSLIDLYGKRKEISCARK 192
           PD ++ P  + A + +  +  G ++HA  +R  +      V  +L+DLY K  ++  A  
Sbjct: 79  PDHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCDDLPAAHT 138

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
              ++   + VS+ +++  +A +  + +A+++F  MP R+ VSWNA++   V  GD+ SA
Sbjct: 139 ALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSA 198

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           R++FD+MP R+  S++ +I GY K G M SAR +F+  P +++VAW+A+I+GYAQ+G P 
Sbjct: 199 RRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPK 258

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           E++ +F +M +  ++PD   +V ++SA SQ+G+ +L+ WV SY+ +  ++ +   V+ AL
Sbjct: 259 ESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERND-KVLTAL 317

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM+AKCGN+D A   F  +   D   Y ++I GL+ HGH + A+ +F+RM ++ + PD 
Sbjct: 318 VDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDP 377

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + F  VLTACSH GLV+ G  ++EAM   Y +    +HYAC+VD+LGR G L+ A+E++ 
Sbjct: 378 ITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQ 437

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           +MP+ PH  A GALL ACK + ++E+ E+VAN+LFELEP N G+Y++LSNIYA  ++W +
Sbjct: 438 TMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEE 497

Query: 553 VCLVRSKMKERGLRKIPGCS 572
              +RS M+ R   K PG S
Sbjct: 498 AERIRSVMRTRVPFKQPGSS 517



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 11/210 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+R+   N   W  ++ GY+Q+    E   +F  +      PD  T   VI A S + S
Sbjct: 232 VFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGS 291

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                 + + V +  ++ +  V T+L+D++ K   +  A   F E+ + +   +TA+I G
Sbjct: 292 TELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISG 351

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALI-----GGLVKIG-DLRSARQLFDEMPE 261
            A+ G    A  VF+ M  +S     +++  ++      GLV  G D   A   +  M E
Sbjct: 352 LAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGM-E 410

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           R    Y  ++D   + G +  A  + +  P
Sbjct: 411 RRADHYACVVDMLGRAGRLEEAFEMVQTMP 440



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           V S++ KK +E++  ++   + + H+    +  + + F  I  P+ + +  L+ G + + 
Sbjct: 298 VGSYVDKKRIERNDKVLTALVDM-HAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHG 356

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
                  +F R+  +   PD  TF  V+ ACSH   V +G     A+++ +G++      
Sbjct: 357 HAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHY 416

Query: 175 TSLIDLYGKRKEISCARKVFDEMP 198
             ++D+ G+   +  A ++   MP
Sbjct: 417 ACVVDMLGRAGRLEEAFEMVQTMP 440



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 122/287 (42%), Gaps = 20/287 (6%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  +S +  VF+++   ++  W+ L+ GY +         +F R+  +  V     +  +
Sbjct: 192 AGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLV----AWTAM 247

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA----RKVFDEMP 198
           I   +     +E  A+   +   G++ D      +I    +      A      V  +  
Sbjct: 248 INGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRI 307

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           ERN    TA++  +A  G++ EA + F  + +     + ALI GL   G  + A Q+F+ 
Sbjct: 308 ERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFER 367

Query: 259 MPERNV----VSYTTMIDGYAKVGDMTSARSLFEA-----APDRDVVAWSALISGYAQNG 309
           M  ++V    +++  ++   +  G +      +EA       +R    ++ ++    + G
Sbjct: 368 MQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAG 427

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           + +EA ++   M    + P    L +L+SAC   GN++++  V + L
Sbjct: 428 RLEEAFEMVQTM---PMGPHPGALGALLSACKTHGNVEIAEIVANKL 471



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V PD F L   ++A + +  L L   + +   R  +   R  V  ALVD+ AKC ++  A
Sbjct: 77  VSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCDDLPAA 136

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
                 +   D VS+ S++   +       A SLF  M S      +V++  ++    + 
Sbjct: 137 HTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSR----TQVSWNAMVVVYVNA 192

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSAYELLNSMPVEPHASAW 503
           G V    R F+ M       P+ +  +  V ++G  + G ++SA E+ + MP + +  AW
Sbjct: 193 GDVSSARRVFDQM-------PTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAK-NLVAW 244

Query: 504 GALL 507
            A++
Sbjct: 245 TAMI 248


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 323/572 (56%), Gaps = 43/572 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHS-LVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           L+++C     L+Q+H+H++  G++   S ++A + +L       + Y+  +F+RI +P+ 
Sbjct: 18  LLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCAL--PAGGGVWYARQLFDRIPDPDR 75

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F++N+L++ Y  +    E   +   +IR   +P+++T P ++KAC+ V +       H  
Sbjct: 76  FVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGV 135

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           V++ G    VFVG +L+  Y     +  +R+ FDEM +RNVVSW +MI GYA  G+  EA
Sbjct: 136 VVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREA 195

Query: 222 KTVFDLMPERS-------------------NVSW--------------------NALIGG 242
            ++F+ M  +                    N+ +                    NAL+  
Sbjct: 196 CSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDM 255

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
             K GDL  A   FD MP +N VS+T+M+   AK   + +AR  FE  P++ +++W+A+I
Sbjct: 256 YGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMI 315

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           S Y Q G+  EA+ +++ M    + PDEF L +++SAC Q+G+L     +   + R +  
Sbjct: 316 SCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCI-RDNFH 374

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
                +  +L+DM A+CG +D A  LF  MP+++V+S+ ++I  L++HG  + A+  F  
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M+ +   PDE+ F  +L+AC+H GL+E G  +F+AM++VY + P  EHYACMVDLLGR G
Sbjct: 435 MVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
            L  A +L+  MP+ P    WGALLGAC+++  I++G+ V  +L ELE  + G +VL+SN
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +     +W D+  +R  M+E G++K  G SS+
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSI 586


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 309/541 (57%), Gaps = 38/541 (7%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT--PLSYSTAVFNRIV 97
           A++L++ CK    L Q+H+ +IK  L ++       +    S      L+Y+  +F+ + 
Sbjct: 34  AISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVD 93

Query: 98  NP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKACSHVLSVRE 154
            P N+F++ T++K Y+      E F  + R++ ++    P+ +TF  V  ACS    V E
Sbjct: 94  IPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFE 153

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G   HA +I++                                 E  V SW +++  Y  
Sbjct: 154 GKQAHAQMIKFPF-------------------------------EFGVHSWNSLLDFYGK 182

Query: 215 VGDL-VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
           VG++ +  + VFD +     VSWN LI G VK GDL  AR+LFDEMPER+VVS+T M+ G
Sbjct: 183 VGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVG 242

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YA  G ++ A  LF+  P R++V+WSALI GY Q G   +A+++F +M    V+ DE I+
Sbjct: 243 YADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIV 302

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            +L+SAC+++G LD   W+  Y+ +  + +  AH+  AL+DM +KCG +D A ++F+   
Sbjct: 303 TTLLSACARLGALDQGRWLHMYIDKHGIKVD-AHLSTALIDMYSKCGRIDMAWKVFQETG 361

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
           ++ V  + SMI GL++H  G +A+ LF +M+  G+ P E+ +  +L AC+H GLV+ G +
Sbjct: 362 DKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQ 421

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F  M       P  +HY C+VDLLGR G L  A+ ++ +MPV+   + W ALL ACKL+
Sbjct: 422 IFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLH 481

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
            ++ELGE V   L ++EPQN  +YVL SN+YA  +RW     +R +MK RG++K PGCSS
Sbjct: 482 RNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSS 541

Query: 574 L 574
           +
Sbjct: 542 I 542


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 321/590 (54%), Gaps = 50/590 (8%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL--S 87
           N  +P  + S + L+  CK    + ++H+ +I  G  ++ +L    +        P    
Sbjct: 6   NSHQPCSISSIIQLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAE 65

Query: 88  YSTAVFNR----------IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           ++  VF            + +P  FLWN ++K +S           F  ++      DK+
Sbjct: 66  FARYVFREYHVCSFAPGDVKDP--FLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKF 123

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           +F LV+KACS +  ++ G  IH  + + G+  D+F+   LI LY K   +  AR++FD M
Sbjct: 124 SFSLVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRM 183

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---------------------------- 229
           P+R+ VS+ +MI GY   G +  A+ +FDLMP                            
Sbjct: 184 PQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASK 243

Query: 230 ------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
                 E+  +SWN+LI G VK G +  A+ LF  MP R+VV++ TMIDGYAK+G +  A
Sbjct: 244 LFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKA 303

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQ 342
           ++LF+  P RDVVA++++++GY QN    EA++IFSDM  + ++ PDE  LV ++SA +Q
Sbjct: 304 KTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQ 363

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L  +  +  Y+      L    +  AL+DM +KCG++ +A  +FE + N+ +  + +
Sbjct: 364 LGQLSKAMDMHLYIVEKQFYLG-GKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNA 422

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI GL+IHG G  A ++   +    + PD + F  VL ACSH GLV++G   FE M+  +
Sbjct: 423 MIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKH 482

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P  +HY CMVDLL R G ++ A  L+  MP+EP+   W   L AC  + + E+GELV
Sbjct: 483 KIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELV 542

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A  L      N  SYVLLSN+YA+  RW DV  VR+ MKER L+K+PGCS
Sbjct: 543 AKHLILQAGYNPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCS 592


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 293/518 (56%), Gaps = 40/518 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F+ +   +   WN +L GY+QN    E   +F ++    ++    ++  ++ A
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSI----SWNGLLAA 179

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
             H   ++E   +  +   W    ++     L+  Y KR  +  AR++FD MP R+V+SW
Sbjct: 180 YVHNGRLKEARRLFESQSNW----ELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISW 235

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
             MI GYA VGDL +AK +F+  P R   +W A++ G V+ G +  AR+ FDEMP +N +
Sbjct: 236 NTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEI 295

Query: 266 SYT-------------------------------TMIDGYAKVGDMTSARSLFEAAPDRD 294
           SY                                TMI GY + G +  AR LF+  P RD
Sbjct: 296 SYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRD 355

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            V+W+A+ISGYAQNG  +EA+ +F +M       +       +S C+ +  L+L   V  
Sbjct: 356 CVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHG 415

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
            + ++  +     V  AL+ M  KCG+ D A ++FE +  +DVVS+ +MI G + HG GR
Sbjct: 416 QVVKAGFETG-CFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGR 474

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           QA+ LF+ M   G+ PDE+    VL+ACSH GL++ G  +F +M   Y + P+ +HY CM
Sbjct: 475 QALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCM 534

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           +DLLGR G L+ A  L+ +MP +P A++WGALLGA +++ + ELGE  A  +F++EPQN+
Sbjct: 535 IDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS 594

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G YVLLSN+YA + RW+DV  +RSKM+E G++K+ G S
Sbjct: 595 GMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYS 632



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 195/360 (54%), Gaps = 17/360 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VFN +   ++  +N ++ GY +N++F     +F      + +P++  F   +    +V +
Sbjct: 68  VFNSMPRRSSVSYNAMISGYLRNAKFSLARDLF------DKMPERDLFSWNVMLTGYVRN 121

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
            R G A    +      +DV    +++  Y +   +  AR+VF++MP RN +SW  ++  
Sbjct: 122 RRLGEA--HKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAA 179

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   G L EA+ +F+       +SWN L+GG VK   L  ARQLFD MP R+V+S+ TMI
Sbjct: 180 YVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMI 239

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GYA+VGD++ A+ LF  +P RDV  W+A++SGY QNG  DEA K F +M  KN    E 
Sbjct: 240 SGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKN----EI 295

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              ++++   Q   + ++   + + +    ++S  + +      N   G + +A +LF+ 
Sbjct: 296 SYNAMLAGYVQYKKMVIAG--ELFEAMPCRNISSWNTMITGYGQN---GGIAQARKLFDM 350

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           MP RD VS+ ++I G + +GH  +A+++F  M  +G + +   F+  L+ C+ +  +E G
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 167/368 (45%), Gaps = 60/368 (16%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D D+      I  + +      A +VF+ MP R+ VS+ AMI GY        A+ +FD 
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPER   SWN ++ G V+   L  A +LFD MP+++VVS+  M+ GYA+ G +  AR +F
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVF 162

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
              P R+ ++W+ L++ Y  NG+  EA ++F                          N +
Sbjct: 163 NKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQS----------------------NWE 200

Query: 348 LSNW---VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           L +W   +  Y+ R+ +  +R                     +LF+ MP RDV+S+ +MI
Sbjct: 201 LISWNCLMGGYVKRNMLGDAR---------------------QLFDRMPVRDVISWNTMI 239

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G +  G   QA  LF+    E    D   +T +++     G+V++  ++F+ M      
Sbjct: 240 SGYAQVGDLSQAKRLFN----ESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMP----- 290

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
           V +   Y  M+    +   +  A EL  +MP   + S+W  ++        I      A 
Sbjct: 291 VKNEISYNAMLAGYVQYKKMVIAGELFEAMPCR-NISSWNTMITGYGQNGGIAQ----AR 345

Query: 525 RLFELEPQ 532
           +LF++ PQ
Sbjct: 346 KLFDMMPQ 353


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/383 (46%), Positives = 252/383 (65%), Gaps = 1/383 (0%)

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
           ++F  M ER+VVSW +MI G   VG+L EA  +FD MP +  VSWN ++ G VK G++  
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           A  LF+ MPERNVVS++TM+ GY K GDM  AR LF+  P +++V+W+ ++SGYA  G  
Sbjct: 62  AFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLA 121

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
            +A++ F  M    ++PD+  ++S++++C++ G L L   V + + R     S  +V  A
Sbjct: 122 KDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCS-VNVSNA 180

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           LVDM AKCG +DRA  +F  M  +D+VS+  M++GL++HGHG +A+ LF  M  EG  PD
Sbjct: 181 LVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPD 240

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           +V    VL AC H G V++G R+F  M+  Y IVP  EHY CMVDLLGR G LK AY L+
Sbjct: 241 KVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLV 300

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMPVEP+   WG LLGAC++++ + L E V + LF+LEP + G+Y LLSNI+A+A  W 
Sbjct: 301 QSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWS 360

Query: 552 DVCLVRSKMKERGLRKIPGCSSL 574
            V  VR +MK  G++K  G SS+
Sbjct: 361 SVANVRLQMKNFGIQKPSGASSI 383



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 12/232 (5%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  +  +  +F+R+   N   W  ++ GY+      +    F ++      PD  T   +
Sbjct: 87  AGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISI 146

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           + +C+    +  G  +H ++ R      V V  +L+D+Y K  ++  A  VF+ M ++++
Sbjct: 147 LASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDL 206

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDE 258
           VSW  M+ G A  G   +A  +F +M +       V+  A++   V  G +    + F+ 
Sbjct: 207 VSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNN 266

Query: 259 MPERN------VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
           M ER+      +  Y  M+D   + G +  A  L ++ P + +VV W  L+ 
Sbjct: 267 M-ERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLG 317


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/493 (37%), Positives = 291/493 (59%), Gaps = 43/493 (8%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           +  +S +  +FN + N N   WNT++ GY+QN R      +F      E +P++      
Sbjct: 128 SNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLF------EKMPER------ 175

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                              V+ W          +++ +  +   I  AR++FD MPER+V
Sbjct: 176 ------------------NVVSW---------NTVMSMLAQCGRIEEARRLFDRMPERDV 208

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           +SWTAMI G +  G + EA+ +FD MPER+ VSWNA+I G  +   L  A  LF+ MPER
Sbjct: 209 ISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPER 268

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           ++ S+ TMI G  + GD+  AR LF   P ++V++W+ +I+G  Q G+ +EA+KIFS M 
Sbjct: 269 DLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRML 328

Query: 323 SKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
           S N  +P++   VS++ ACS +  L     V   +S++    S   V++AL++M +KCG 
Sbjct: 329 STNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDS-TFVVSALINMYSKCGE 387

Query: 382 MDRAAELFE--TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           +  A ++F+      RD+VS+  +I   + HG+G++A++ F  M   G  PD+V +  +L
Sbjct: 388 LGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLL 447

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +ACSH GLVE+G ++F+ +    +I+   +HYAC+VDL GR G LK A+  +  +  +P 
Sbjct: 448 SACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPS 507

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A  WGALL  C +++++++G+  A +L E+EP+NAG+Y+LLSNIYA+  +W +   VR K
Sbjct: 508 ARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLK 567

Query: 560 MKERGLRKIPGCS 572
           MK++GL+K PGCS
Sbjct: 568 MKDKGLKKQPGCS 580



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 200/380 (52%), Gaps = 50/380 (13%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           VD +V     +I    K   I  AR++FDEM E +V++WT +I GY   G + EA+ +FD
Sbjct: 48  VDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD 107

Query: 227 LMPERSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
            +  + N V+W A++GG ++   +  A +LF+EMP +NVVS+ TMIDGYA+ G + SA  
Sbjct: 108 RVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMY 167

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--------------CSKNVQPDEF 331
           LFE  P+R+VV+W+ ++S  AQ G+ +EA ++F  M               SKN + DE 
Sbjct: 168 LFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEA 227

Query: 332 ILV-------------SLMSACSQVGNLDLSNWVDSYLSRSHMDL-SRAHVIAALVDMNA 377
            L+             ++++  +Q  NL L   +D +      DL S   +I  L+    
Sbjct: 228 RLLFDRMPERNVVSWNAMITGYAQ--NLRLDEALDLFERMPERDLPSWNTMITGLI---- 281

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFT 436
           + G++ RA +LF  MP ++V+S+ +MI G    G   +A+ +F RMLS  G  P++  F 
Sbjct: 282 QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFV 341

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY------ACMVDLLGRTGHLKSAYEL 490
            VL ACS++  + +G       Q V+ I+    +       + ++++  + G L +A ++
Sbjct: 342 SVLGACSNLAGLGEG-------QQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKM 394

Query: 491 L-NSMPVEPHASAWGALLGA 509
             + M  +    +W  ++ A
Sbjct: 395 FDDGMTSQRDLVSWNGIIAA 414



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 172/333 (51%), Gaps = 25/333 (7%)

Query: 212 YASVGDLVEAKTVF---DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           Y S+ D   AK      D   + +    N +I  L K G +  AR+LFDEM E +V+++T
Sbjct: 28  YHSINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWT 87

Query: 269 TMIDGYAKVGDMTSARSLFEAA-PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T+I GY K G +  AR LF+     ++VV W+A++ GY ++ +  +A K+F++M +KNV 
Sbjct: 88  TVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVV 147

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
                  +++   +Q G +D + ++   +   ++ +S   V++ L    A+CG ++ A  
Sbjct: 148 S----WNTMIDGYAQNGRIDSAMYLFEKMPERNV-VSWNTVMSML----AQCGRIEEARR 198

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           LF+ MP RDV+S+ +MI GLS +G   +A  LFDRM    +    V++  ++T  +    
Sbjct: 199 LFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV----VSWNAMITGYAQNLR 254

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +++    FE M      +PS   +  M+  L + G L+ A +L N MP + +  +W  ++
Sbjct: 255 LDEALDLFERMPE--RDLPS---WNTMITGLIQNGDLRRARKLFNEMP-KKNVISWTTMI 308

Query: 508 GACKLYSDIELGELVANRLFELE--PQNAGSYV 538
             C    + E    + +R+        N G++V
Sbjct: 309 TGCVQEGESEEALKIFSRMLSTNGAKPNQGTFV 341


>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
          Length = 533

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 168/400 (42%), Positives = 267/400 (66%), Gaps = 1/400 (0%)

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           V  +L+DLY K  ++  A     ++   + VS+ +++  +A +  + +A+++F  MP R+
Sbjct: 119 VANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRT 178

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
            VSWNA++   V  GD+ SAR++FD+MP R+  S++ +I GY K G M SAR +F+  P 
Sbjct: 179 QVSWNAMVVVYVNAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPA 238

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           +++VAW+A+I+GYAQ+G P E++ +F +M +  ++PD   +V ++SA SQ+G+ +L+ WV
Sbjct: 239 KNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWV 298

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
            SY+ +  ++ +   V+ ALVDM+AKCGN+D A   F  +   D   Y ++I GL+ HGH
Sbjct: 299 GSYVDKKRIERND-KVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGH 357

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
            + A+ +F+RM ++ + PD + F  VLTACSH GLV+ G  ++EAM   Y +    +HYA
Sbjct: 358 AKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYA 417

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           C+VD+LGR G L+ A+E++ +MP+ PH  A GALL ACK + ++E+ E+VAN+LFELEP 
Sbjct: 418 CVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPH 477

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N G+Y++LSNIYA  ++W +   +RS M+ R   K PG S
Sbjct: 478 NTGNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPGSS 517



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 11/210 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+R+   N   W  ++ GY+Q+    E   +F  +      PD  T   VI A S + S
Sbjct: 232 VFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGS 291

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                 + + V +  ++ +  V T+L+D++ K   +  A   F E+ + +   +TA+I G
Sbjct: 292 TELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISG 351

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALI-----GGLVKIG-DLRSARQLFDEMPE 261
            A+ G    A  VF+ M  +S     +++  ++      GLV  G D   A   +  M E
Sbjct: 352 LAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGM-E 410

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           R    Y  ++D   + G +  A  + +  P
Sbjct: 411 RRADHYACVVDMLGRAGRLEEAFEMVQTMP 440



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           V S++ KK +E++  ++   + + H+    +  + + F  I  P+ + +  L+ G + + 
Sbjct: 298 VGSYVDKKRIERNDKVLTALVDM-HAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHG 356

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
                  +F R+  +   PD  TF  V+ ACSH   V +G     A+++ +G++      
Sbjct: 357 HAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHY 416

Query: 175 TSLIDLYGKRKEISCARKVFDEMP 198
             ++D+ G+   +  A ++   MP
Sbjct: 417 ACVVDMLGRAGRLEEAFEMVQTMP 440



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 122/287 (42%), Gaps = 20/287 (6%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  +S +  VF+++   ++  W+ L+ GY +         +F R+  +  V     +  +
Sbjct: 192 AGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLV----AWTAM 247

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA----RKVFDEMP 198
           I   +     +E  A+   +   G++ D      +I    +      A      V  +  
Sbjct: 248 INGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRI 307

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           ERN    TA++  +A  G++ EA + F  + +     + ALI GL   G  + A Q+F+ 
Sbjct: 308 ERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFER 367

Query: 259 MPERNV----VSYTTMIDGYAKVGDMTSARSLFEA-----APDRDVVAWSALISGYAQNG 309
           M  ++V    +++  ++   +  G +      +EA       +R    ++ ++    + G
Sbjct: 368 MQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAG 427

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           + +EA ++   M    + P    L +L+SAC   GN++++  V + L
Sbjct: 428 RLEEAFEMVQTM---PMGPHPGALGALLSACKTHGNVEIAEIVANKL 471



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V PD F L   ++A + +  L L   + +   R  +   R  V  ALVD+ AKC ++  A
Sbjct: 77  VSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAA 136

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
                 +   D VS+ S++   +       A SLF  M S      +V++  ++    + 
Sbjct: 137 HTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSR----TQVSWNAMVVVYVNA 192

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSAYELLNSMPVEPHASAW 503
           G V    R F+ M       P+ +  +  V ++G  + G ++SA E+ + MP + +  AW
Sbjct: 193 GDVSSARRVFDQM-------PTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAK-NLVAW 244

Query: 504 GALL 507
            A++
Sbjct: 245 TAMI 248


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/585 (34%), Positives = 325/585 (55%), Gaps = 48/585 (8%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAV 92
           S +   + L+  CK    ++++H+ ++  G  ++ +L    +    +   P  + ++  V
Sbjct: 12  SSISPTIKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFV 71

Query: 93  FN----RIVNP------NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           F+    R  +P      + +LWN ++K +S  +       +F  ++      DK++  LV
Sbjct: 72  FHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLV 131

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           +KACS +  V+EG  IH  + + G+  D+F+   LI LY K   +  AR++FD MP+R+ 
Sbjct: 132 LKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDS 191

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPE-------------------------------- 230
           VS+ +MI GY   G    A+ +FDLMPE                                
Sbjct: 192 VSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEM 251

Query: 231 --RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
             +  +SWN++I G VK G +  A+ LFD MP R+VV+++TMIDGYAK+G +  A++LF+
Sbjct: 252 PDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFD 311

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLD 347
             P RDVV+++++I+GY QN    EA++IFSDM  + ++ PDE  LV ++SA +Q+G L 
Sbjct: 312 QMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS 371

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
            +  +  Y+      L    +  AL+DM +KCG++  A  +F+ + N+ +  + +MI GL
Sbjct: 372 KAMDMHLYIVEKQFFLG-GKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGL 430

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +IHG G  A  +  ++    + PD++ F  +L ACSH GLV++G   FE M+  + I P 
Sbjct: 431 AIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPR 490

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            +HY CMVD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E GELVA  L 
Sbjct: 491 LQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLI 550

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
                N  SYVLLSN+YA+  +W DV  +R+ MKER + K+PGCS
Sbjct: 551 WEAGYNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCS 595


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 317/576 (55%), Gaps = 52/576 (9%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL----------SYSTA 91
           T I++C+      Q+H+ +IK G  Q+ +L    +    +   P           +Y + 
Sbjct: 1   TQIRRCE------QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSC 54

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F      + FLWN ++K +S           F  ++      DK++  LV+KACS +  
Sbjct: 55  SFAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGF 114

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           V+EG  IH  + + G+  D+F+   LI LY K   +  AR++FD MP+R+ VS+ +MI G
Sbjct: 115 VQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDG 174

Query: 212 YASVGDLVEAKTVFDLMP----------------------------------ERSNVSWN 237
           Y   G +  A+ +FDLMP                                  E+  +SWN
Sbjct: 175 YVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWN 234

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           +LI G VK G +  A+ LF  MP R+VV++ TMIDGYAK+G +  A++LF+  P RDVVA
Sbjct: 235 SLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVA 294

Query: 298 WSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           ++++++GY QN    EA++IF++M    ++ PDE  LV ++SA +Q+G L  +  ++ Y+
Sbjct: 295 YNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYI 354

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
                 L    +  AL+DM++KCG++ +A  +FE + N+ +  + +MI GL+IHGHG  A
Sbjct: 355 VEKSFPLG-GKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELA 413

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
             +  ++    + PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY C+VD
Sbjct: 414 FDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVD 473

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           +L R+G ++ A  L+  MP+EP+   W   L AC+   + E+GELVA  L      N  S
Sbjct: 474 ILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSS 533

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YVLLSN+YA+   W DV  VR  MK+R L KIPGCS
Sbjct: 534 YVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCS 569


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/383 (45%), Positives = 253/383 (66%), Gaps = 2/383 (0%)

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
           R++F EM ERNVV+WT+MI GY    DLV A+ +FDL PER  V WN ++ G ++ GD+ 
Sbjct: 33  REIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMV 92

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
            AR+LF EMP R+V+ + T++ GYA  G++ +   LFE  P+R++ +W+ALI GYA NG 
Sbjct: 93  EARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 152

Query: 311 PDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             E +  F  M S+ +V P++  LV+++SAC+++G LDL  WV  Y   S +     +V 
Sbjct: 153 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLK-GNVYVG 211

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            AL+DM AKCG ++ A  +F  M  +D++S+ ++I GL++H  G  A++LF +M + G  
Sbjct: 212 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 271

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD + F  +L AC+H+GLVEDG+ +F++M + Y I+P  EHY CMVD+L R G L+ A  
Sbjct: 272 PDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMA 331

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MPVE     W  LLGAC++Y ++EL EL   RL ELEP+N  +YV+LSNIY  A R
Sbjct: 332 FVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGR 391

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W DV  ++  M++ G +K+PGCS
Sbjct: 392 WEDVARLKVAMRDTGFKKLPGCS 414



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 184/410 (44%), Gaps = 41/410 (10%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF-TIFVR-LIREEAVPDKYTFPLVI 143
           ++Y+  +F++I +PN  LWN++ +GY+Q+  + E+F  +F R ++   ++ + Y     +
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADL 60

Query: 144 KACSHVLSVREGTAIHAAVIRWGV----------------------DEDVFVGTSLIDLY 181
            +   +  +    A    V+ W +                      + DV    +++  Y
Sbjct: 61  VSARRLFDL----APERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGY 116

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN---- 237
                +     +F+EMPERN+ SW A+I GYA  G   E    F  M   S+V  N    
Sbjct: 117 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 176

Query: 238 -ALIGGLVKIG--DLRSARQLFDEMP--ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
             ++    ++G  DL     ++ E    + NV     ++D YAK G + +A S+F     
Sbjct: 177 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 236

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           +D+++W+ LI G A + +  +A+ +F  M +   +PD    + ++ AC+ +G ++     
Sbjct: 237 KDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAY 296

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHG 411
              ++  ++ + +      +VDM A+ G +++A      MP   D V +  ++    I+ 
Sbjct: 297 FQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYK 356

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC-SHVGLVEDGWRFFEAMQN 460
           +   A     R++   L P   A  ++L+      G  ED  R   AM++
Sbjct: 357 NVELAELALQRLIE--LEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRD 404


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 309/543 (56%), Gaps = 17/543 (3%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV-NPNT 101
           L K+C     L QVH+ ++       H+   H +S    L     YS+ +F+ I  +PN 
Sbjct: 30  LAKQCSSTKTLQQVHTQMVVN--SSIHTPNNHLLSKAIHLKN-FPYSSLLFSHIAPHPND 86

Query: 102 FLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           + +N +++  +     +    ++F R++     PD +TFP    +C+++ S+    A H+
Sbjct: 87  YAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHS 146

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            + +  +  D     SLI  Y +   ++ ARKVFDE+P R+ VSW +MI GYA  G   E
Sbjct: 147 LLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCARE 206

Query: 221 AKTVFDLMPERSN-----VSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SY--TTMI 271
           A  VF  M  R       +S  +L+G   ++GDL   R +   + ER +   SY  + +I
Sbjct: 207 AVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALI 266

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             YAK G++ SAR +F+    RDV+ W+A+ISGYAQNG  DEA+ +F  M    V  ++ 
Sbjct: 267 SMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKI 326

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            L +++SAC+ +G LDL   +D Y S+         V  AL+DM AK G++D A  +F+ 
Sbjct: 327 TLTAVLSACATIGALDLGKQIDEYASQRGFQ-HDIFVATALIDMYAKSGSLDNAQRVFKD 385

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVE 449
           MP ++  S+ +MI  L+ HG  ++A+SLF  M  EG    P+++ F  +L+AC H GLV+
Sbjct: 386 MPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVD 445

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G+R F+ M  ++ +VP  EHY+CMVDLL R GHL  A++L+  MP +P     GALLGA
Sbjct: 446 EGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGA 505

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+   ++++GE V   + E++P N+G+Y++ S IYA  + W D   +R  M+++G+ K P
Sbjct: 506 CRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTP 565

Query: 570 GCS 572
           GCS
Sbjct: 566 GCS 568


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/411 (44%), Positives = 260/411 (63%), Gaps = 14/411 (3%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             L+  Y +   IS ARKVFD+MPERNVVSWTAMI GY   G + EA+ +F  MPER+ V
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SW  ++GGL++ G +  ARQLFD MP ++VV+ T MIDG    G +  AR +F+  P R+
Sbjct: 89  SWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRN 148

Query: 295 VVAWSALISG-------------YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           VVAW+++ISG             Y + G   EA+ +FS M  + V+P    ++S++S C 
Sbjct: 149 VVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCG 208

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            + +LD    V S L RS  D+   +V + L+ M  KCG++  A  +F+   ++D+V + 
Sbjct: 209 SLASLDHGRQVHSQLVRSQFDID-IYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWN 267

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           S+I G + HG G +A+ +F  M S  + PDE+ F  VL+ACS+ G V++G   FE+M++ 
Sbjct: 268 SIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSK 327

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y + P  EHYACMVDLLGR G L  A  L+ +MPVE  A  WGALLGAC+ + +++L E+
Sbjct: 328 YQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEI 387

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            A +L +LEP NAG Y+LLSN+Y++  RW DV  +R  M+ + LRK PGCS
Sbjct: 388 AAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCS 438



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           W+T++K Y +    +E   +F  + RE   P   +   V+  C  + S+  G  +H+ ++
Sbjct: 165 WSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLV 224

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           R   D D++V + LI +Y K  ++  A++VFD    +++V W ++I GYA  G   +A  
Sbjct: 225 RSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALE 284

Query: 224 VFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGY 274
           VF  M   S     +++  ++      G ++   ++F+ M  +  V      Y  M+D  
Sbjct: 285 VFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLL 344

Query: 275 AKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
            + G +  A +L E  P + D + W AL+ 
Sbjct: 345 GRAGKLNEAMNLIENMPVEADAIVWGALLG 374



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 39/216 (18%)

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV------ 326
           GY +      AR LF+  P+ + ++W+ L+SGY QNG   EA K+F  M  +NV      
Sbjct: 3   GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAM 62

Query: 327 ----------QPDEFIL-----VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
                     +  E +       +++S    +G L     VD   +R   D+     + A
Sbjct: 63  IRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDE--ARQLFDMMPVKDVVA 120

Query: 372 LVDM-NAKC--GNMDRAAELFETMPNRDVVSYCSMIKG----------LSIH---GHGRQ 415
             +M +  C  G +  A E+F+ MP R+VV++ SMI G          + I+   G   +
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELE 180

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           A++LF  M  EG+ P   +   VL+ C  +  ++ G
Sbjct: 181 ALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHG 216



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSY 88
           P    ++S L++        H  QVHS +++   + D  + +  I++   C  L T    
Sbjct: 195 PSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVT---- 250

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  VF+R  + +  +WN+++ GY+Q+    +   +F  +      PD+ TF  V+ ACS+
Sbjct: 251 AKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSY 310

Query: 149 VLSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
              V+EG  I  ++  ++ VD        ++DL G+  +++ A  + + MP E + + W 
Sbjct: 311 TGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWG 370

Query: 207 AMIVGYASVGDL----VEAKTVFDLMP 229
           A++    +  +L    + AK +  L P
Sbjct: 371 ALLGACRTHKNLDLAEIAAKKLLQLEP 397



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 54/212 (25%)

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ++GY QN +P EA K+F  M   N                        +W          
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNT----------------------ISW---------- 28

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
                     LV    + G +  A ++F+ MP R+VVS+ +MI+G    G   +A  LF 
Sbjct: 29  --------NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFW 80

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLG 479
           RM    +    V++T++L      GL+EDG R  EA Q ++ ++P  +  A   M+D L 
Sbjct: 81  RMPERNV----VSWTVMLG-----GLIEDG-RVDEARQ-LFDMMPVKDVVASTNMIDGLC 129

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
             G L  A E+ + MP + +  AW +++   K
Sbjct: 130 SEGRLIEAREIFDEMP-QRNVVAWTSMISGEK 160



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A +LF+ MP  + +S+  ++ G   +G   +A  +FD+M    +    V++T ++     
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYVQ 68

Query: 445 VGLVEDG----WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
            GL+E+     WR  E  +NV +       +  M+  L   G +  A +L + MPV+   
Sbjct: 69  EGLIEEAELLFWRMPE--RNVVS-------WTVMLGGLIEDGRVDEARQLFDMMPVKDVV 119

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ--------------NAGSYVLLSNIYAT 546
           ++   + G C     IE     A  +F+  PQ              + G++  +  IY  
Sbjct: 120 ASTNMIDGLCSEGRLIE-----AREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER 174

Query: 547 ADRWLDVCLVRSKMKERGLR 566
               L+   + S M+  G+R
Sbjct: 175 KGFELEALALFSLMQREGVR 194


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/530 (37%), Positives = 297/530 (56%), Gaps = 35/530 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+L+  CK    L Q+H   IK G++ D       I  C  S++  L Y+  +      P
Sbjct: 9   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           + F++NTL++GYS++        +FV ++R+  V PD ++F  VIKA  +  S+R G  +
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   ++ G++  +FVGT+LI +YG    +  ARKV                         
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKV------------------------- 163

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                 FD M + + V+WNA+I    +  D+  AR++FD+M  RN  S+  M+ GY K G
Sbjct: 164 ------FDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAG 217

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++ SA+ +F   P RD V+WS +I G A NG  +E+   F ++    + P+E  L  ++S
Sbjct: 218 ELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLS 277

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PNRDV 397
           ACSQ G+ +    +  ++ ++        V  AL+DM ++CGN+  A  +FE M   R +
Sbjct: 278 ACSQSGSFEFGKILHGFVEKAGYSWI-VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCI 336

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ SMI GL++HG G +AV LF+ M + G+TPD ++F  +L ACSH GL+E+G  +F  
Sbjct: 337 VSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSE 396

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+ VY I P  EHY CMVDL GR+G L+ AY+ +  MP+ P A  W  LLGAC  + +IE
Sbjct: 397 MKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 456

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           L E V  RL EL+P N+G  VLLSN YATA +W DV  +R  M  + ++K
Sbjct: 457 LAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKK 506


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/528 (35%), Positives = 312/528 (59%), Gaps = 12/528 (2%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
            QVH  I K G    +++V   IS  + +   +  +  +F+ + + +   WN+++ GY +
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISF-YFVGRKVRCAQKLFDELTDRDVISWNSMISGYVK 329

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVF 172
           N        IF++++      D  T   V  AC+++ ++  G  +H+  I+   +D +V 
Sbjct: 330 NGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVR 389

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
              +L+D+Y K  +++ A +VF+ M E+ VVSWT+MI GY   G    A  +FD M  R 
Sbjct: 390 FNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRG 449

Query: 233 NV----SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSAR 284
            V    +  +++      G+L+S + + D + E N+ + +     + D YAK G M  A 
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAH 509

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F     +DV++W+ +I GY +N  P+EA+ +F++M  +  +PD   +  ++ AC+ + 
Sbjct: 510 DVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-QRESKPDGTTVACILPACASLA 568

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            LD    +  Y  R+     + +V  A+VDM  KCG +  A  LF+ +PN+D+VS+  MI
Sbjct: 569 ALDKGREIHGYALRNGYSEDK-YVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMI 627

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G  +HG+G +A++ F++M   G+ PDEV+F  +L ACSH GL+++GW+ F  M+    I
Sbjct: 628 AGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQI 687

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P+ EHYACMVDLL RTG+L  A++ + +MP++P A+ WGALL  C+++ D++L E VA 
Sbjct: 688 EPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAE 747

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           R+FELEP+N G YVLL+NIYA A++W +V  +R K+ +RGL+K PGCS
Sbjct: 748 RIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCS 795



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 221/417 (52%), Gaps = 20/417 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+++     FLWN ++  YS +  + E   +F +++     P+ YTF  ++K  + V  
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVAR 266

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           V EG  +H  + + G +    V  SLI  Y   +++ CA+K+FDE+ +R+V+SW +MI G
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326

Query: 212 YASVG------DLVEAKTVF----DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           Y   G      ++     VF    DL    +     A IG L+ +G +  +  +     +
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL-LGKVLHSYSIKAATLD 385

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           R V    T++D Y+K GD+ SA  +FE   ++ VV+W+++I+GY + G  D A+K+F +M
Sbjct: 386 REVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM 445

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
            S+ V PD + + S+++AC+  GNL     V  Y+  ++++ + + V  AL DM AKCG+
Sbjct: 446 KSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLE-TNSFVSNALTDMYAKCGS 504

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           M  A ++F  M  +DV+S+ +MI G + +    +A++LF  M  E   PD      +L A
Sbjct: 505 MKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPA 563

Query: 442 CSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYA--CMVDLLGRTGHLKSAYELLNSMP 495
           C+ +  ++ G      A++N Y    S + Y    +VD+  + G L  A  L + +P
Sbjct: 564 CASLAALDKGREIHGYALRNGY----SEDKYVTNAVVDMYVKCGLLVLARSLFDMIP 616



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 167/377 (44%), Gaps = 45/377 (11%)

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNV----VSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           S++ L  +RK I   R+V   +    V    +    ++  Y   GDL E + VFD + E 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARS-- 285
               WN +I      G+   +  LF +M E     N  ++++++  +A V  +   R   
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 286 ---------------------------------LFEAAPDRDVVAWSALISGYAQNGQPD 312
                                            LF+   DRDV++W+++ISGY +NG  D
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDD 334

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
             ++IF  M    V  D   +V++  AC+ +G L L   + SY  ++            L
Sbjct: 335 RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTL 394

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           +DM +KCG+++ A  +FE M  + VVS+ SMI G    G    A+ LFD M S G+ PD 
Sbjct: 395 LDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDV 454

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
            A T +L AC+  G ++ G    + ++       S    A + D+  + G +K A+++ +
Sbjct: 455 YAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNA-LTDMYAKCGSMKDAHDVFS 513

Query: 493 SMPVEPHASAWGALLGA 509
            M  +    +W  ++G 
Sbjct: 514 HMK-KKDVISWNTMIGG 529



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 146/330 (44%), Gaps = 28/330 (8%)

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ-LFDEMPERNVV-S 266
           IV +  VGDL   K   +L+    N +++  +G    I  L + R+ + D    R+++ S
Sbjct: 124 IVEFCEVGDL---KNAMELLCSSQNSNFD--LGAYCSILQLCAERKSIRDGRRVRSIIES 178

Query: 267 YTTMIDG---------YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
              MIDG         Y K GD+   R +F+   +  +  W+ +IS Y+ +G   E++ +
Sbjct: 179 SGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINL 238

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M    ++P+ +   S++   + V  ++    V   + +   + S   V+ +L+    
Sbjct: 239 FKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFN-SYNTVVNSLISFYF 297

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
               +  A +LF+ + +RDV+S+ SMI G   +G   + + +F +ML  G+  D      
Sbjct: 298 VGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVN 357

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           V  AC+++G +  G            +         ++D+  + G L SA  +   M  E
Sbjct: 358 VFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-E 416

Query: 498 PHASAWGALL----------GACKLYSDIE 517
               +W +++          GA KL+ +++
Sbjct: 417 KTVVSWTSMITGYVREGLSDGAIKLFDEMK 446


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/526 (36%), Positives = 301/526 (57%), Gaps = 45/526 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +  P+   WN ++ G++Q+ RF E    FV +  E+ V ++Y+F   + AC+ +  
Sbjct: 107 VFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTD 166

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  IHA + +     DV++G++L+D+Y K   ++CA++ FD M  RN+VSW ++I  
Sbjct: 167 LNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITC 226

Query: 212 YASVGDLVEAKTVFDLMPER--------------SNVSW--------------------- 236
           Y   G   +A  VF +M +               +  SW                     
Sbjct: 227 YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286

Query: 237 -----NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
                NAL+    K   +  AR +FD MP RNVVS T+M+ GYA+   + +AR +F    
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMM 346

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           +++VV+W+ALI+GY QNG+ +EAV++F  +  +++ P  +   +L++AC+ + +L L   
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 352 VDSYLSRSHM-----DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             + + +        + S   V  +L+DM  KCG ++    +FE M  RDVVS+ +MI G
Sbjct: 407 AHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVG 466

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + +G+G  A+ +F +ML  G  PD V    VL+ACSH GLVE+G R+F +M+    + P
Sbjct: 467 YAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAP 526

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             +H+ CMVDLLGR G L  A +L+ +MP++P    WG+LL ACK++ +IELG+ VA +L
Sbjct: 527 MKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKL 586

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E++P N+G YVLLSN+YA   RW DV  VR +M++RG+ K PGCS
Sbjct: 587 MEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCS 632



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 207/484 (42%), Gaps = 83/484 (17%)

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK 185
           +L+ E    D   F  ++ +C    S  +   IHA +I+     ++F+   L+D YGK  
Sbjct: 9   KLVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCG 68

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
               ARKVFD MP+RN  S+ A++      G L EA  VF  MPE    SWNA++ G  +
Sbjct: 69  YFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQ 128

Query: 246 IGDLRSARQLFDEMPERNVV----SY---------------------------------- 267
                 A + F +M   + V    S+                                  
Sbjct: 129 HDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYM 188

Query: 268 -TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
            + ++D Y+K G +  A+  F+    R++V+W++LI+ Y QNG   +A+++F  M    V
Sbjct: 189 GSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGV 248

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           +PDE  L S++SAC+    +     + + + +     +   +  ALVDM AKC  ++ A 
Sbjct: 249 EPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEAR 308

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +F+ MP R+VVS  SM+ G +     + A  +F  M+ + +    V++  ++   +  G
Sbjct: 309 LVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNV----VSWNALIAGYTQNG 364

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
             E+  R F                                  LL    + P    +G L
Sbjct: 365 ENEEAVRLF---------------------------------LLLKRESIWPTHYTFGNL 391

Query: 507 LGACKLYSDIELG-----ELVANRLFELEPQNAGSYV--LLSNIYATADRWLDVCLVRSK 559
           L AC   +D++LG     +++ +  +    + +  +V   L ++Y       D CLV  +
Sbjct: 392 LNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFER 451

Query: 560 MKER 563
           M ER
Sbjct: 452 MVER 455



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 149/345 (43%), Gaps = 57/345 (16%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  +  +  +F+ ++  N   WN L+ GY+QN    E   +F+ L RE   P  YTF
Sbjct: 329 YARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTF 388

Query: 140 PLVIKACSHVLSVREGTAIHAAVIR---W---GVDEDVFVGTSLIDLYGKRKEISCARKV 193
             ++ AC+++  ++ G   H  +++   W   G + D+FVG SLID+Y K   +     V
Sbjct: 389 GNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLV 448

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDL 249
           F+ M ER+VVSW AMIVGYA  G    A  +F  M     +  +V+   ++      G +
Sbjct: 449 FERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLV 508

Query: 250 RSARQLFDEM-------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
              R+ F  M       P ++   +T M+D   + G +  A  L +  P           
Sbjct: 509 EEGRRYFHSMRTELGLAPMKD--HFTCMVDLLGRAGCLDEANDLIQTMP----------- 555

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
                                  +QPD  +  SL++AC   GN++L  +V   L    +D
Sbjct: 556 -----------------------MQPDNVVWGSLLAACKVHGNIELGKYVAEKL--MEID 590

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY--CSMIK 405
              +     L +M A+ G       + + M  R V+    CS I+
Sbjct: 591 PLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIE 635


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/535 (37%), Positives = 298/535 (55%), Gaps = 35/535 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L+L+  CK    L Q+H   IK G++ D       I  C  S++  L Y+  +      P
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           + F++NTL++GYS++        +FV ++R+  V PD ++F  VIKA  +  S+R G  +
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   ++ G++  +FVGT+LI +YG    +  ARKV                         
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKV------------------------- 155

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                 FD M + + V+WNA+I    +  D+  AR++FD+M  RN  S+  M+ GY K G
Sbjct: 156 ------FDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAG 209

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++ SA+ +F   P RD V+WS +I G A NG  +E+   F ++    + P+E  L  ++S
Sbjct: 210 ELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLS 269

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PNRDV 397
           ACSQ G+ +    +  ++ ++        V  AL+DM ++CGN+  A  +FE M   R +
Sbjct: 270 ACSQSGSFEFGKILHGFVEKAGYSWI-VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCI 328

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ SMI GL++HG G +AV LF+ M + G+TPD ++F  +L ACSH GL+E+G  +F  
Sbjct: 329 VSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSE 388

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+ VY I P  EHY CMVDL GR+G L+ AY+ +  MP+ P A  W  LLGAC  + +IE
Sbjct: 389 MKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 448

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L E V  RL EL+P N+G  VLLSN YATA +W DV  +R  M  + ++K    S
Sbjct: 449 LAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWS 503


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 338/579 (58%), Gaps = 49/579 (8%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIV- 97
           L+L++ C     L Q+ + +   GL       +  ++ C +L+ P  L+++ AV  +   
Sbjct: 35  LSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLAFC-ALSDPPRLAHAAAVLAQCAE 93

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            PN ++  T+++G+ +  +      +F R++R+    D  T    +KA +   S  E  A
Sbjct: 94  GPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPAE--A 151

Query: 158 IHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           IH    + G + + V VG +L+ +Y     +  ARK+FDEM +R+VVSWT ++ GYA  G
Sbjct: 152 IHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGG 211

Query: 217 DLVEAKTVFDLM-------PE--------------------------------RSNVSW- 236
              EA  VF  M       P                                 R +V+  
Sbjct: 212 LPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLE 271

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NAL+    K G + SA+++FD MP ++V S+T+M+  YAK GD+ +A  LF+  P+R+ V
Sbjct: 272 NALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAV 331

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV-DSY 355
           +WS +++ Y+Q   P+EA++IF+DM +  V+P +  LVS++SAC+Q+G LD+   + D+Y
Sbjct: 332 SWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAY 391

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           +    ++L+  ++  A +DM AKCG++  A+ LF  M +++VVS+ +MI   ++HG   +
Sbjct: 392 IVSHKVELT-VNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEE 450

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LF +  + G+ PDE+ +  VL+ACSH GLV +G   F+ M+ VY I P  EHYACM+
Sbjct: 451 ALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMI 510

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLG+ G L+ A+E+  SMPV    + WGALL AC+++ ++E+G+  A++L  L+P ++G
Sbjct: 511 DLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSG 570

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            YVL+S IYA+  +W  V ++R+ M++RG++K PGCSS+
Sbjct: 571 IYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSI 609


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 312/550 (56%), Gaps = 12/550 (2%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGL-----EQDHSLVAHFISLCHSLATPL 86
           P P  L + L+ ++ C   +H  Q H+ ++  G       +  +L+   ++   +  +  
Sbjct: 5   PPPHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAA 64

Query: 87  SYSTAVFNRIVNP---NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
            ++ +VF  +      + F WNTL++ ++  S    +   F R+ R    PD YTFP V+
Sbjct: 65  DHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRVAVAPDAYTFPAVL 123

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           KAC      R G  +H   +R G+D D+F   +LI  Y +  +    RKVFD    R++V
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDH-GVRDLV 182

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRSARQLFDEMPER 262
           SW +M+ GY   G++  A+ +FD M +R   SW  +I G  ++ G +  AR+LFD+MP+R
Sbjct: 183 SWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDR 242

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           ++V + +MIDGYA+ G M  AR LFE  P+R+V++WS +I GY + G+P+EA++ F  M 
Sbjct: 243 DLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRML 302

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
           S  ++PD    V  ++AC+Q+G L+   W+ SYL +  + L    V  AL+DM  KCG +
Sbjct: 303 SCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTALIDMYVKCGRL 361

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           D A  +FE+MP + VV++  MI GL  HG+G  A+ LF++M +E    D+++   VLT+C
Sbjct: 362 DLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSC 421

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           +H GLV +G   F  M+    + P  EHY  ++DLLGR G +  A   + +MP+EP    
Sbjct: 422 THAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPEL 481

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           WG+LL +C+ +  +EL EL   RL  L   ++G YVLLSNIYA    W DV  +R  M  
Sbjct: 482 WGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSA 541

Query: 563 RGLRKIPGCS 572
            G++K  G S
Sbjct: 542 EGMKKNIGRS 551


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 312/547 (57%), Gaps = 15/547 (2%)

Query: 32  PKPSCLLS-ALTLIKKCKLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYS 89
           P P   LS  L+ ++ C   +H  Q H+ ++  G L      +++ + L  + A+ +S++
Sbjct: 3   PSPPLALSFLLSRLRACTSASHALQCHALLLTSGHLAASPLRLSNLLLLALASASAVSHA 62

Query: 90  TAVFNRIV----NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
            AVF R++    + + F WNTL++ ++  S        F  + R    PD YTFP V+KA
Sbjct: 63  DAVFARLLPGPASRDAFPWNTLIRLHAPASPR-NALAYFACMRRAAVEPDAYTFPAVLKA 121

Query: 146 CS-HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           C+  VL    G  +HA  +R G+D D+F   +L+  Y +  +    RKVFD    R++VS
Sbjct: 122 CACGVL----GLPVHAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDH-GARDLVS 176

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-IGDLRSARQLFDEMPERN 263
           W +M+ GY + G+L  A+ +FD MP R   SW  +I    K  G +  AR+LFDE P R+
Sbjct: 177 WNSMVAGYVACGELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRD 236

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +V + +MIDGYA+ G M  AR+LFE  P+R+V++WS ++ GY + G+P EA+++F  M  
Sbjct: 237 LVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLR 296

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             ++PD    V   +AC+Q+G L+   W+ SYL +  + L    V  AL+DM  KCG +D
Sbjct: 297 CGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTALIDMYMKCGRLD 355

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
               +FE+MP++ VV++  MI GL  H  G  AV LF +M +EG   D+++   VLTAC+
Sbjct: 356 LGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACT 415

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+ +G   F  M+  + + P  EHY  +VDLLGR GHL  A   + +MP+EP    W
Sbjct: 416 HAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELW 475

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           G+LL AC+ +  +EL EL   RL  L   + G YVLLSNIYA    W  V  +R  M   
Sbjct: 476 GSLLAACRSHRCVELAELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAE 535

Query: 564 GLRKIPG 570
           G++K  G
Sbjct: 536 GMKKDIG 542


>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 531

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 279/440 (63%), Gaps = 2/440 (0%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARK 192
           PD ++ P  + A + +   R G ++HA   R   V   + V  +L+DLY K   +  A  
Sbjct: 79  PDHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAAHA 138

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
               +P  + VS+ +++  +A +  +  A+++F  MP R+ VSWNA++   V  GD  SA
Sbjct: 139 ALASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASA 198

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           R +FDEMP R+  S++ +I GY K G M SAR LF+  P +++V W+A+I+GYAQ G+P 
Sbjct: 199 RLVFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPK 258

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           E++ +F ++ +  ++PD   +V ++S+ SQ+G+  L+ WV +Y+ R  ++ +   V+ AL
Sbjct: 259 ESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNE-KVLTAL 317

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM+AKCGN+++A   F  +   D   Y ++I GL+ HGH   A+ +F+RM ++ + PD 
Sbjct: 318 VDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDP 377

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + F  VLTACSH GLV+ G  ++EAM   Y +    +HYAC+VD+LGR G +  A++++ 
Sbjct: 378 ITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMVQ 437

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           +MP+ PH  A GALL ACK + ++E+ E+VAN+LFELEP+N G+Y+LLSNIYA  ++W +
Sbjct: 438 TMPMGPHPGALGALLSACKTHDNVEIAEIVANKLFELEPRNTGNYILLSNIYAGKEQWEE 497

Query: 553 VCLVRSKMKERGLRKIPGCS 572
              +RS M+ +   K PG +
Sbjct: 498 AERIRSLMRTKLPFKQPGST 517



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   N   W  ++ GY+Q  R  E  ++F  L      PD  T   VI + S + S
Sbjct: 232 LFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSASQIGS 291

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                 +   V R  ++ +  V T+L+D++ K   +  A   F E+ + +   +TA+I G
Sbjct: 292 TALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISG 351

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALI-----GGLVKIGDLRSARQLFDEMPER 262
            A+ G    A  VF+ M  ++     +++  ++      GLV +G       + D   +R
Sbjct: 352 LATHGHSTLALQVFERMRAQAVRPDPITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDR 411

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
               Y  ++D   + G +  A  + +  P
Sbjct: 412 RADHYACVVDMLGRAGRIVEAFDMVQTMP 440



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           +P  A+++   M    V PD F L   ++A + +G       + +   R  +  +R  V 
Sbjct: 61  RPHAALRLLLLMPRLPVSPDHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVA 120

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            ALVD+ AKC  +  A     ++P  D VS+ S++   +       A SLF  M S    
Sbjct: 121 NALVDLYAKCDALPAAHAALASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSR--- 177

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSA 487
             +V++  ++    + G        F + + V+  +P+ +  +  V ++G  + G ++SA
Sbjct: 178 -TQVSWNAMVVVYVNAG-------DFASARLVFDEMPTRDSSSWSVLIVGYCKRGSMQSA 229

Query: 488 YELLNSMP 495
            EL + MP
Sbjct: 230 RELFDKMP 237


>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
 gi|219885333|gb|ACL53041.1| unknown [Zea mays]
 gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
          Length = 528

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 188/389 (48%), Positives = 256/389 (65%), Gaps = 3/389 (0%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I  AR +F+ MP R+VVSW +M+ G A  G L EA  +FD MPE +  SWNAL+ G + 
Sbjct: 136 DIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGFMA 195

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  A++LF+ MP RN VS+ TMI GYAK GD+ +A +LF+    +D+ AW+A+IS Y
Sbjct: 196 QGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCY 255

Query: 306 AQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           AQNG   EA+ IF+ M   +  V P+E    S++SACSQ+G+L    WV++++    +DL
Sbjct: 256 AQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVGVDL 315

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
              H+  ALVD+  K G MDRA +LF  + +RDVVSY +MI G  +HG   +AV LF  M
Sbjct: 316 DD-HLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEM 374

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
               + P+ V F  +L+A SH GL+E+    F +M + Y I PS EHY  MVD+LGR G 
Sbjct: 375 SKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGK 434

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L+ A++L+  +PV P AS WGALL AC+L+++IELGE+VA++ FELEPQ +G Y+LL NI
Sbjct: 435 LEEAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEVVASKCFELEPQESGYYILLGNI 494

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YA A +W  V  +R  M ERGL K PG S
Sbjct: 495 YAQAKKWDKVKGLRKMMAERGLSKTPGSS 523



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 12/223 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKACSHV 149
           +F+R+ + + + WN ++  Y+QN    E   IF R+++     VP++ TF  VI ACS +
Sbjct: 236 LFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQL 295

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +R G  +   +   GVD D  + T+L+DLY K   +  A  +F  +  R+VVS++AMI
Sbjct: 296 GDLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMI 355

Query: 210 VGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           VG    G L EA  +F  M +     + V++  L+      G L  AR  F  M  R  +
Sbjct: 356 VGCGMHGKLNEAVGLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRI 415

Query: 266 S-----YTTMIDGYAKVGDMTSARSLFEAAPD-RDVVAWSALI 302
           +     YT M+D   + G +  A  L    P   D   W AL+
Sbjct: 416 NPSMEHYTIMVDILGRCGKLEEAFQLVMQIPVCPDASVWGALL 458



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 41/181 (22%)

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM-------------- 423
           + G++  A  +FE MP RDVVS+ SM+ GL+  GH  +A+ +FD+M              
Sbjct: 133 RAGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSG 192

Query: 424 -LSEG------------LTPDEVAFTIVLTACSHVGLVEDGWRFFEAM--QNVYAIVPSP 468
            +++G             T + V++  +++  +  G V+     F+ M  +++YA     
Sbjct: 193 FMAQGHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYA----- 247

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMP-----VEPHASAWGALLGACKLYSDIELGELVA 523
             +  M+    + G  + A  + N M      V P+   + +++ AC    D+  G  V 
Sbjct: 248 --WNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVE 305

Query: 524 N 524
           N
Sbjct: 306 N 306


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 187/485 (38%), Positives = 290/485 (59%), Gaps = 17/485 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+R+ + N+  WN LL  Y ++ R  E   +F           K  + L+   C     
Sbjct: 148 VFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF---------ESKSDWELISCNCLMGGY 198

Query: 152 VREGTAIHAAVIRWGVDE----DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           V+      A   R   D+    D+    ++I  Y +  ++S AR++F+E P R+V +WTA
Sbjct: 199 VKRNMLGDA---RQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTA 255

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+  Y   G L EA+ VFD MP++  +S+N +I G  +   +   R+LF+EMP  N+ S+
Sbjct: 256 MVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSW 315

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
             MI GY + GD+  AR+LF+  P RD V+W+A+I+GYAQNG  +EA+ +  +M      
Sbjct: 316 NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGES 375

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +       +SAC+ +  L+L   V   + R+  +     V  ALV M  KCG +D A +
Sbjct: 376 LNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKG-CLVGNALVGMYCKCGCIDEAYD 434

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ + ++D+VS+ +M+ G + HG GRQA+++F+ M++ G+ PDE+    VL+ACSH GL
Sbjct: 435 VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            + G  +F +M   Y I P+ +HYACM+DLLGR G L+ A  L+ +MP EP A+ WGALL
Sbjct: 495 TDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALL 554

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GA +++ ++ELGE  A  +F++EP N+G YVLLSN+YA + RW+DV  +R KM++ G++K
Sbjct: 555 GASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQK 614

Query: 568 IPGCS 572
            PG S
Sbjct: 615 TPGYS 619



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 204/409 (49%), Gaps = 26/409 (6%)

Query: 52  HLHQVHSHII---------KKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +L Q+HS I          K   E  H++        H        +  VF+ +   N+ 
Sbjct: 6   NLRQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSV 65

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            +N ++ GY +N++F     +F ++  +    D +++ L++   +    +R+   +  ++
Sbjct: 66  SYNAMISGYLRNAKFSLARDLFDKMPHK----DLFSWNLMLTGYARNRRLRDARMLFDSM 121

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
                ++DV    +++  Y +   +  AR VFD MP +N +SW  ++  Y   G L EA+
Sbjct: 122 ----PEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEAR 177

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
            +F+   +   +S N L+GG VK   L  ARQLFD++P R+++S+ TMI GYA+ GD++ 
Sbjct: 178 RLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQ 237

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR LFE +P RDV  W+A++  Y Q+G  DEA ++F +M  K     E     +++  +Q
Sbjct: 238 ARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR----EMSYNVMIAGYAQ 293

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
              +D+   +        M          ++    + G++ +A  LF+ MP RD VS+ +
Sbjct: 294 YKRMDMGREL-----FEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAA 348

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +I G + +G   +A+++   M  +G + +   F   L+AC+ +  +E G
Sbjct: 349 IIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELG 397



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 22/281 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ +  +F+ +   ++  W  ++ GY+QN  + E   + V + R+    ++ TF   + A
Sbjct: 328 LAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSA 387

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + ++  G  +H  V+R G ++   VG +L+ +Y K   I  A  VF  +  +++VSW
Sbjct: 388 CADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSW 447

Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             M+ GYA  G   +A TVF+ M     +   ++   ++      G      + F  M +
Sbjct: 448 NTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNK 507

Query: 262 R-----NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQ---PD 312
                 N   Y  MID   + G +  A++L    P + D   W AL+     +G     +
Sbjct: 508 DYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGE 567

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           +A ++   M   N     ++L+S + A S         WVD
Sbjct: 568 QAAEMVFKMEPHN--SGMYVLLSNLYAAS-------GRWVD 599


>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
          Length = 534

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 178/440 (40%), Positives = 277/440 (62%), Gaps = 2/440 (0%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV-GTSLIDLYGKRKEISCARK 192
           PD +T P  + A + +  +  G ++HA  +R  +         +L+DLY K +E   A  
Sbjct: 80  PDHFTLPFALNAAASLRLLPLGASLHAVALRLALLPLRLPVANALVDLYAKCEEFPAAHA 139

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
              ++P  + VS+ +++  +A    +  A+++F  MP R+ VSWNA++   V  GDL +A
Sbjct: 140 ALADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYVSAGDLAAA 199

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
            ++FDEMP R+  S   +I GY K G + +AR LF+  P +D+VA +A+I+GYAQ G+P 
Sbjct: 200 CRVFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRPK 259

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
            A+ +F D+ +  ++PD   +V ++SA SQ+G+ +L+ WV +Y+ R  ++ +   V+ AL
Sbjct: 260 VALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNE-KVLTAL 318

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM+AKCGN+++A   F  +P  D   Y ++I GL+ HGH   A+S+F+RM +E + P  
Sbjct: 319 VDMHAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHP 378

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + F  VLTACSH G VE G  ++EAM   Y I    +HYAC++D+LGR G ++ A+E++ 
Sbjct: 379 ITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHYACVIDMLGRAGRIEEAFEMVQ 438

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           +MP+ PH  A GALL ACK Y ++E+ E+VAN+LFELEP N G+Y+LLSNIYA  + W +
Sbjct: 439 TMPMGPHPGALGALLSACKTYDNVEIAEVVANKLFELEPWNTGNYILLSNIYAGKELWEE 498

Query: 553 VCLVRSKMKERGLRKIPGCS 572
              VRS M+ +   K PG +
Sbjct: 499 AERVRSLMRTKLPFKSPGST 518



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 9/209 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   +      ++ GY+Q  R      +F  L      PD  T   VI A S + S
Sbjct: 233 LFDKMPTKDLVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISAVSQIGS 292

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                 + A V R  ++ +  V T+L+D++ K   I  A   F E+P  +   +TA+I G
Sbjct: 293 TELAGWVGAYVDRKKIERNEKVLTALVDMHAKCGNIEQALSAFREIPRPDAYPYTALISG 352

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP-----ER 262
            A+ G    A +VF+ M         +++  ++      G++    + ++ M      ER
Sbjct: 353 LATHGHENLALSVFERMRAEDIKPHPITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIER 412

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           +   Y  +ID   + G +  A  + +  P
Sbjct: 413 HADHYACVIDMLGRAGRIEEAFEMVQTMP 441



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 95/209 (45%), Gaps = 15/209 (7%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           V +++ +K +E++  ++   + + H+    +  + + F  I  P+ + +  L+ G + + 
Sbjct: 299 VGAYVDRKKIERNEKVLTALVDM-HAKCGNIEQALSAFREIPRPDAYPYTALISGLATHG 357

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
                 ++F R+  E+  P   TF  V+ ACSH  +V +G     A+++ +G++      
Sbjct: 358 HENLALSVFERMRAEDIKPHPITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHY 417

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE-----AKTVFDLMP 229
             +ID+ G+   I  A ++   MP          ++      D VE     A  +F+L P
Sbjct: 418 ACVIDMLGRAGRIEEAFEMVQTMPMGPHPGALGALLSACKTYDNVEIAEVVANKLFELEP 477

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDE 258
                 WN   G  + + ++ + ++L++E
Sbjct: 478 ------WN--TGNYILLSNIYAGKELWEE 498



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           +P  A+ +   M    V+PD F L   ++A + +  L L   + +   R  +   R  V 
Sbjct: 62  RPRAALALLLIMPRLPVRPDHFTLPFALNAAASLRLLPLGASLHAVALRLALLPLRLPVA 121

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            ALVD+ AKC     A      +P  D VS+ S++   + +   R A SLF  M     T
Sbjct: 122 NALVDLYAKCEEFPAAHAALADIPAPDAVSFNSLLCAHARNASVRPAESLFAAM----PT 177

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSA 487
             +V++  ++      G +    R F+ M       P+ +  + MV ++G  + G +++A
Sbjct: 178 RTQVSWNAMVVLYVSAGDLAAACRVFDEM-------PTRDTASSMVLIVGYCKCGLVQNA 230

Query: 488 YELLNSMPVE 497
            EL + MP +
Sbjct: 231 RELFDKMPTK 240


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 204/579 (35%), Positives = 317/579 (54%), Gaps = 46/579 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL----------SY 88
           S + ++  CK    ++++H  +IK G+ ++ +L    +    +   P            Y
Sbjct: 7   STIQVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVFHEY 66

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
               F+     + FLWN ++K +S      +   +F  ++      DK++  LV+KACS 
Sbjct: 67  HVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSR 126

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  V+ G  IH  + + G+  D+F+   LI LY K   +  AR++FD MP+R+ VS+ +M
Sbjct: 127 LGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSM 186

Query: 209 IVGYASVGDLVEAKTVFDLMP----------------------------------ERSNV 234
           I GY   G +  A+ +FDLMP                                  E+  +
Sbjct: 187 INGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLI 246

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN++I G VK G +  A+ LFD MP R+VV+  TMIDGYAK+G +  A++LF+  P RD
Sbjct: 247 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRD 306

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           VVA++++++GY QN    EA++IF+DM  + ++ PDE  LV ++SA +Q+G L  +  + 
Sbjct: 307 VVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMH 366

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            Y+      L    +  AL+DM +KCG++  A  +FE + N+ +  + +MI GL++HG G
Sbjct: 367 LYIVEKQFYLG-GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLG 425

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             A ++  ++    + PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY C
Sbjct: 426 ESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 485

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E GELVA  L      N
Sbjct: 486 MVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 545

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             SYVLLSN+YA+   W DV  VR+ MKER + KIPGCS
Sbjct: 546 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 584


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 183/478 (38%), Positives = 283/478 (59%), Gaps = 38/478 (7%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK-----RKEIS 188
           P+ +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +        + 
Sbjct: 109 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVG 168

Query: 189 CARKVFDEM-------------------------------PERNVVSWTAMIVGYASVGD 217
            AR+VFDEM                               PERNVVSW  ++ G+A +GD
Sbjct: 169 AARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGD 228

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
           +V A+ VFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T M+  YAK+
Sbjct: 229 MVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKI 288

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSL 336
           GD+ +   LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LVS+
Sbjct: 289 GDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 348

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           +SAC+Q+G+++  NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  +F  M  R 
Sbjct: 349 VSACAQLGSVEYCNWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAESIFYKMETRC 407

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           ++++ +MI G + +G  R A+ +++ M  EG+  D+  F   L AC+H GL+++GW  F 
Sbjct: 408 IITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFN 467

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M   Y I P  EHY CMVDLLGR G+L+ A   + SMP+EP    W  LL +C  + + 
Sbjct: 468 EMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNA 527

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           EL E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 528 ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSI 585



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 11/232 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ AC+ + 
Sbjct: 297 LFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLG 356

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           SV     I + + +  +   V +G +LID++ K  ++  A  +F +M  R +++WT MI 
Sbjct: 357 SVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMIS 416

Query: 211 GYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           G+A  G   +A  V++ M     +  +  + A +      G L+    +F+EM ER  + 
Sbjct: 417 GFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQ 476

Query: 267 -----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD 312
                Y  M+D   + G++  A    E+ P +  VV W  L+     +G  +
Sbjct: 477 PRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNAE 528



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + ++F ++       W T++ G++ N    +   ++  + RE    D   F   + AC+H
Sbjct: 396 AESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAH 455

Query: 149 VLSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
              ++EG +I   ++ R+ +   +     ++DL G+   +  A    + MP E +VV W 
Sbjct: 456 GGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWV 515

Query: 207 AMIVGYASVG--DLVE--AKTVFDLMPERSN 233
            ++    + G  +L+E  +K + +L P  S+
Sbjct: 516 TLLCSCVAHGNAELIEYVSKKITELEPFNSS 546



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 47/220 (21%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V P+ F    L+ AC+ +G       V   + R     S   V  AL+D+  +CG   
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALMDVYHRCGGGG 163

Query: 384 R-----AAELFETMPNRDVVSYCSM-------------------------------IKGL 407
                 A ++F+ M +RDVVS+ S+                               + G 
Sbjct: 164 GGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGF 223

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +  G    A ++FDRM S     + V++ ++++  +  G VE     F+ M     +   
Sbjct: 224 ARMGDMVTARAVFDRMPSR----NAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVV--- 276

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
              +  MV    + G L +  EL + MPV+   S W A++
Sbjct: 277 --SWTAMVSAYAKIGDLDTVNELFDHMPVKNLVS-WNAMI 313


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 312/537 (58%), Gaps = 18/537 (3%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA---TPLSYSTAVFNRIVNP--NTFLWN 105
           ++L Q+H+ +IK G  +       F SL  + A   T L Y+ ++F     P  +T  +N
Sbjct: 30  SYLPQLHAALIKSG--ELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYN 87

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIRE-EAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVI 163
            L++ +       +   +F+ ++    A P D++T    +K+CS + ++  G  + A  +
Sbjct: 88  VLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAV 147

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G+  D FV +SLI +Y    +++ AR VFD   E  VV W A++  Y   GD +E   
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 224 VFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYA 275
           +F  M E       V+  +++    +IGD +  + +   + E    RN    T ++D YA
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G++  AR LF+    RDVVAWSA+ISGY Q  Q  EA+ +FS+M    V+P++  +VS
Sbjct: 268 KCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVS 327

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++SAC+ +G L+   WV SY+ R  + L+   +  ALVD  AKCG +D A E FE+MP +
Sbjct: 328 VLSACAVLGALETGKWVHSYVRRKRLSLTTI-LGTALVDFYAKCGCIDDAVEAFESMPVK 386

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +  ++ ++IKG++ +G GR+A+ LF  M   G+ P +V F  VL ACSH  LVE+G R F
Sbjct: 387 NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHF 446

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           ++M   Y I P  EHY CMVDLLGR G +  AY+ + +MP+EP+A  W ALL +C ++ +
Sbjct: 447 DSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRN 506

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +GE    ++  L P ++G YVLLSNIYA+A +W D  +VR +MK+RG+ K PGCS
Sbjct: 507 VGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCS 563


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/506 (37%), Positives = 304/506 (60%), Gaps = 39/506 (7%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV-REGTAIH 159
           TFL N L++  + ++     F  F  L+R   VPD++T P ++ +   + +  R G  +H
Sbjct: 59  TFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVH 118

Query: 160 AAVIRWGVDEDVFVGTSLIDLYG--------------------------------KRKEI 187
           A  +R G   DVFV  +L+ +YG                                K  E+
Sbjct: 119 AQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEM 178

Query: 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVK 245
             A++VFDEMP RN VSW+ M+ GYA+ G+L  A+ +FD MP   R+ V+WN+++ G  +
Sbjct: 179 ESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFAR 238

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  AR++FDEMP RN+VS+  M+ GY+   DM  AR LF+  P++DVV+W+ +ISGY
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298

Query: 306 AQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           AQ G+  + +++F  M ++ NVQP+E  +VS++SAC+ +  L+   WV +++ +  M L+
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLN 358

Query: 365 RAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
             + + AAL+DM AKCG  D A ++F ++  ++V ++ ++I  L+++G+ + +V  F++M
Sbjct: 359 NEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQM 418

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
              G  P+++ F  VLTACSH GLV++G R F++M +   + P  +HY CMVD+LGR G 
Sbjct: 419 KRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGL 478

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL--FELEPQNAGSYVLLS 541
           L+ A EL+ SMP+ P    +GALLGAC+++   ++ E V + +    L  Q +G +VL+S
Sbjct: 479 LEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLIS 538

Query: 542 NIYATADRWLDVCLVRSKMKERGLRK 567
           +IYA A +W DV   R  ++  G+RK
Sbjct: 539 DIYAAAGKWFDVLEARQVVQRSGIRK 564



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 173/430 (40%), Gaps = 111/430 (25%)

Query: 55  QVHSHIIKKGLEQD----HSLVAHFISL------------CHSLATPLSYSTA------- 91
           QVH+  +++G   D    ++L+A + +L            C  +A  +S++T        
Sbjct: 116 QVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKC 175

Query: 92  --------VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
                   VF+ +   N   W+T++ GY+          +F R+                
Sbjct: 176 GEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRM---------------- 219

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
                        AI   V+ W          S++  + +   +  ARK+FDEMP RN+V
Sbjct: 220 ------------PAIGRNVVTW---------NSMVTGFARHGLLPLARKMFDEMPVRNLV 258

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PER 262
           SW AM+ GY+   D+  A+ +FD+MPE+  VSW  +I G  + G  +   +LF  M  E 
Sbjct: 259 SWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTES 318

Query: 263 NV-------VSY----------------------------------TTMIDGYAKVGDMT 281
           NV       VS                                     +ID YAK G   
Sbjct: 319 NVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTD 378

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            A  +F +   ++V AW+ALI+  A NG   ++V  F  M     +P++   V +++ACS
Sbjct: 379 IAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACS 438

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSY 400
             G +D        ++ +            +VDM  + G ++ A EL  +MP   DV+ +
Sbjct: 439 HGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVF 498

Query: 401 CSMIKGLSIH 410
            +++    +H
Sbjct: 499 GALLGACRMH 508



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKG--LEQDHSLVAHFISLCHSLATPLSYSTAV 92
           ++ ++++  C   T L +   VH+ I K    L  +++L A  I + ++       +  +
Sbjct: 325 VTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDM-YAKCGRTDIAVKI 383

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           FN +   N   WN L+   + N    +    F ++ R    P+  TF  V+ ACSH   V
Sbjct: 384 FNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLV 443

Query: 153 REG-TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
            EG     +     GV  +V     ++D+ G+   +  A ++   MP
Sbjct: 444 DEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP 490


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/579 (34%), Positives = 310/579 (53%), Gaps = 62/579 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFIS------------------LCHSLATPLSYSTAVFNRI 96
           Q+H+H++  GL QD S +                       L H+LA   S   + +N  
Sbjct: 28  QIHAHLLAAGLLQDFSSLLAAAYALSTTATATDARTSPPSPLRHALALLSSLPASAYNAA 87

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           +   +   +    G+    R + ++   +R     A PD  TFP ++KAC+ +     G 
Sbjct: 88  IRALSLSDDGDRHGHGVVRRCLPLYRALLR--SGTARPDHLTFPFLLKACARLREWGYGD 145

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           A  A V+R G+D DVFV  +       R  +  AR++FD  P R++VSW  +I GY   G
Sbjct: 146 AALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRG 205

Query: 217 DLVEAKTVFDLMPERSNVS----------------------------------------- 235
           +  EA  +F  M     V                                          
Sbjct: 206 NPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRL 265

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NAL+   +K G L  A+ +F+ +  R VVS+TTMI G+AK G M  AR +F+  P+RDV
Sbjct: 266 MNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDV 325

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
             W+AL++GY Q  Q  EA+ +F +M   +V PDE  +V+L++ACSQ+G L++  WV  Y
Sbjct: 326 FPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRY 385

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + +  +  S A +  +L+DM AKCGN+++A  +F+ +P ++ +++ +MI GL+ HGH  +
Sbjct: 386 IEKHRLVFSVA-LGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANE 444

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+  F  M+  G  PDE+ F  VL+AC H GLV++G  FF  M+  Y +    +HY+CM+
Sbjct: 445 AIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMI 504

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR GHL  A +L+N+MP+EP A  WGA+  AC++  +I LGE  A +L E++P ++G
Sbjct: 505 DLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSG 564

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            YVLL+N+YA A+       VR+ M+  G+ K+PGCS +
Sbjct: 565 IYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCI 603


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 314/579 (54%), Gaps = 55/579 (9%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLS------YSTAV 92
            L L+ K K    ++Q+HS +I  G   + SL    I +   S   PL       + +  
Sbjct: 73  TLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRH 132

Query: 93  FNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           F R      N FLWN ++K +S      E F IF  ++      DK++F LV+KACS + 
Sbjct: 133 FGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLG 192

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGT-------------------------------SLID 179
            ++EG  IH  +    +  DVF+                                 S+ID
Sbjct: 193 LIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMID 252

Query: 180 LYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYA-SVGDLVEAKTVFDLMPERSNVSW 236
            Y K   +  AR++FD MP  ++N++SW +MI GYA S   L  A  +F+ MP+R  +SW
Sbjct: 253 GYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISW 312

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N++I G VK G + +A  LF+ MP+R+VVS+  M+DGYAK+G++  AR LF+  P+RDV+
Sbjct: 313 NSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVI 372

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           + +A+++GY QNG   EA+  F DM S K + P    L+  +SA +Q+G+ D    +  Y
Sbjct: 373 SCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCY 432

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           +  +   LS   +  AL+DM AKCG++D A           +  + ++J GL+IHG G  
Sbjct: 433 IEDNGFSLSEK-LGXALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGLGEV 481

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  LF  M    + PB++ F  VL AC+H GLV++G   F  M+ V+ + P  +HY CMV
Sbjct: 482 AFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMV 541

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           D+LGR GH++   + +  MP+EP+   W  LL AC+ + +  +GE VA  L  ++  N  
Sbjct: 542 DILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPS 601

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SYVLLSNIYA    W DV  +R  MK+R L+KIPGCS +
Sbjct: 602 SYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQI 640


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/506 (38%), Positives = 292/506 (57%), Gaps = 36/506 (7%)

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           FLWN ++K +S      +   +F  +++     DK++  LV+KACS +  V+EG   H  
Sbjct: 89  FLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGF 148

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--------------------- 200
           + + G+  D+F+   LI LY K   +  AR+VFD M +R                     
Sbjct: 149 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESA 208

Query: 201 ------------NVVSWTAMIVGYASVGDLVE-AKTVFDLMPERSNVSWNALIGGLVKIG 247
                       N++SW +MI GYA   D V+ A  +FD MPE+  +SWN+LI G VK G
Sbjct: 209 RELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHG 268

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            +  A+ LFD+MP R+VV++ TM+DGYAK+G +  A+SLF+  P RDVVA++++++GY Q
Sbjct: 269 RIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQ 328

Query: 308 NGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           N    EA+ IF+DM  + ++ PDE  LV ++SA +Q+G L  +  +  Y       L   
Sbjct: 329 NRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLG-G 387

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  AL+DM +KCG++ +A  +FE + N+ +  + +MI GL+IHG G  A  +  ++   
Sbjct: 388 KLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERR 447

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
            + PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY CMVD+L R+G ++ 
Sbjct: 448 SIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIEL 507

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A  L+  MP+EP+   W   L AC  + + E GELVA  L      N  SYVLLSN+YA+
Sbjct: 508 AKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYAS 567

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
              W +V  VR+ MKER ++KIPGCS
Sbjct: 568 LGMWKEVRRVRTMMKERKIQKIPGCS 593



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 161/392 (41%), Gaps = 112/392 (28%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   WN+++ GY+Q +  +++ +        + +P+K                       
Sbjct: 221 NLISWNSMINGYAQRADGVDIASNLF-----DEMPEK----------------------- 252

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +I W          SLID Y K   I  A+ +FD+MP R+VV+W  M+ GYA +G + 
Sbjct: 253 -DLISW---------NSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVH 302

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS------------- 266
           +AK++FD MP+R  V++N+++ G V+      A  +F++M + + +S             
Sbjct: 303 QAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAI 362

Query: 267 --------------YTT-------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
                         YT              +ID Y+K G +  A  +FE   ++ +  W+
Sbjct: 363 AQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWN 422

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+I G A +G  + A  +   +  ++++PD+   V +++ACS  G +         + R 
Sbjct: 423 AMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRK 482

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
           H    R      +VD+ ++ G ++ A  L E MP                          
Sbjct: 483 HKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMP-------------------------- 516

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
                   + P++V +   LTACSH    E G
Sbjct: 517 --------IEPNDVIWRTFLTACSHHKEFETG 540



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 11/204 (5%)

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D   W+A+I  ++   +P +A+ +F  M    V  D+F L  ++ ACS++G +       
Sbjct: 87  DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXH 146

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            +L ++ +  S   +   L+ +  KCG +  A ++F+ M  RD VSY SMI G    G  
Sbjct: 147 GFLRKTGI-WSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLI 205

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE--HY 471
             A  LFD M SE    + +++  ++   +      DG    +   N++  +P  +   +
Sbjct: 206 ESARELFDLMPSE--KKNLISWNSMINGYAQRA---DG---VDIASNLFDEMPEKDLISW 257

Query: 472 ACMVDLLGRTGHLKSAYELLNSMP 495
             ++D   + G ++ A +L + MP
Sbjct: 258 NSLIDGYVKHGRIEDAKDLFDKMP 281



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 10/240 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H + ++K       L    I + +S    +  +  
Sbjct: 350 PDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDM-YSKCGSIQQAMG 408

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF RI N +   WN ++ G + +      F + +++ R    PD  TF  V+ ACSH   
Sbjct: 409 VFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGL 468

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ + +EMP E N V W   +
Sbjct: 469 VKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFL 528

Query: 210 VGYA-----SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
              +       G+LV    +  L    +  S+  L      +G  +  R++   M ER +
Sbjct: 529 TACSHHKEFETGELVAKHLI--LQAGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKI 586


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/579 (35%), Positives = 329/579 (56%), Gaps = 53/579 (9%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQD---HSLVAHFISLCHSLATPLSYSTAVFNRI 96
           +L L++KC  +T   Q+  H+++  L       S +  F ++ H     L  +  +FN  
Sbjct: 34  SLILLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSH--PENLELAILLFNHF 91

Query: 97  V-NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
              PN +++NT++ G+  ++   + FTI+  +++    PD+ TF  +++    V  V++ 
Sbjct: 92  TPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ- 148

Query: 156 TAIHAAVIRWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
             IH   + +G+  ++ ++  SLI  Y       CAR++FDEM +RNVVS+  MI+G+A 
Sbjct: 149 --IHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 206

Query: 215 VGDLVEAKTVF------DLMPE--------------------------------RSN-VS 235
           VG+++    +F       L P+                                 SN + 
Sbjct: 207 VGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLIL 266

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           +NAL+   VK  +L+ AR++FD   E++ VS+ T+I GYAKVG++  A  LF   P RD+
Sbjct: 267 YNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDI 326

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W++LISGYAQNG       +F+ M ++NV+PD+  +V+L+SA +++G LD   W+   
Sbjct: 327 VSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHG- 385

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           L+   +    A   +AL+DM  KCG+++RA  +F  +P +DV ++ +MI G + HG G +
Sbjct: 386 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 445

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LF  M +E   P++V F  VL ACSH GLV++G + F +M+  Y+I P  EHY C+V
Sbjct: 446 ALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLV 504

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLL R+G L  A  ++  MP+EP  S WGA+L AC+++ ++EL E     L +LEP+  G
Sbjct: 505 DLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEG 564

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            Y+LLSN+YAT  RW     +R  M  RG++KI GCSS+
Sbjct: 565 GYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSV 603


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 322/557 (57%), Gaps = 51/557 (9%)

Query: 64  GLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIV-NPNTFLWNTLLKGYSQNSRFIEV 120
           GL  +    +  ++ C +L+ P  L+++ AV  +    PN ++  T+++G+ +  +    
Sbjct: 58  GLASNRFPASRLLAFC-ALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHA 116

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLID 179
            T+F R++R+    D  T    +KA +   S  E  AIH    + G + + V  G +L+ 
Sbjct: 117 LTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTE--AIHCVAFKRGFIGQSVLAGNALVH 174

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW--- 236
           +Y     +  ARK+FDEM +R+VVSWT +I GYA  G   EA  VF  M    +V W   
Sbjct: 175 MYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNE 233

Query: 237 --------------------------------------NALIGGLVKIGDLRSARQLFDE 258
                                                 NAL+    K G + +A+++FD 
Sbjct: 234 VTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDG 293

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP ++V S+T+M+  YAK GD+ +A  LF+  P+R+VV+WS +++ Y+    PDEA++IF
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIF 353

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNA 377
           +DM +  V+P +  LVS++SAC+Q+ +LD+  W+ D+Y+    ++L+  ++  A +DM A
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELT-PNLSNAFIDMFA 412

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG++  A+ LF  M +++VVS+ +MI    +HG   +A+ LF      G+ PDE  +  
Sbjct: 413 KCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIG 472

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           VL+ACSH GLV +G   F+ M+ VY I P  EHYACM+DLLG+ G L+ A+E+  SMPV 
Sbjct: 473 VLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVG 532

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
              + WGALL AC+++ ++E+G+  A++L  L+P ++G YVL+S IYA+  +W  V ++R
Sbjct: 533 ADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLR 592

Query: 558 SKMKERGLRKIPGCSSL 574
           + M++R ++K PGCSS+
Sbjct: 593 TVMRDRRVKKNPGCSSI 609



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 193/427 (45%), Gaps = 44/427 (10%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H    K+G      L  + +   ++ +  L  +  +F+ + + +   W TL+ GY++  
Sbjct: 152 IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGG 211

Query: 116 RFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              E + +F R++  E+V P++ T      A   +  +  G  +H  ++  G    V + 
Sbjct: 212 LPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLE 271

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            +L+D++GK   ++ A++VFD MP ++V SWT+M+  YA  GDL  A  +F  +P R+ V
Sbjct: 272 NALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVV 331

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNV------------------------------ 264
           SW+ ++           A ++F++M    V                              
Sbjct: 332 SWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTY 391

Query: 265 -VSY---------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
            VS+            ID +AK GD+ +A  LF    D++VV+W+ +I  +  +GQP+EA
Sbjct: 392 IVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEA 451

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           + +F +     + PDE   + ++SACS  G +         +   +    RA   A ++D
Sbjct: 452 LHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMID 511

Query: 375 MNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           +  K G +  A E+  +MP   D   + +++    +HG+        D++   GL P + 
Sbjct: 512 LLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKL--AGLDPSDS 569

Query: 434 AFTIVLT 440
              ++++
Sbjct: 570 GIYVLMS 576


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/506 (37%), Positives = 303/506 (59%), Gaps = 39/506 (7%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV-REGTAIH 159
           TFL   L++  + ++     F  F  L+R   VPD++T P ++ +   + +  R G  +H
Sbjct: 59  TFLQKILIRASASSASPGLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVH 118

Query: 160 AAVIRWGVDEDVFVGTSLIDLYG--------------------------------KRKEI 187
           A  +R G   DVFV  +L+ +YG                                K  E+
Sbjct: 119 AQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEM 178

Query: 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVK 245
             A++VFDEMP RN VSW+ M+ GYA+ G+L  A+ +FD MP   R+ V+WN+++ G  +
Sbjct: 179 ESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFAR 238

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  AR++FDEMP RN+VS+  M+ GY+   DM  AR LF+  P++DVV+W+ +ISGY
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298

Query: 306 AQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           AQ G+  + +++F  M ++ NVQP+E  +VS++SAC+ +  L+   WV +++ +  M L+
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLN 358

Query: 365 RAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
             + + AAL+DM AKCG  D A ++F ++  ++V ++ ++I  L+++G+ R +V  F++M
Sbjct: 359 NEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQM 418

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
              G  P+++ F  VLTACSH GLV++G R F++M +   + P  +HY CMVD+LGR G 
Sbjct: 419 KRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGL 478

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL--FELEPQNAGSYVLLS 541
           L+ A EL+ SMP+ P    +GALLGAC+++   ++ E V + +    L  Q +G +VL+S
Sbjct: 479 LEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLIS 538

Query: 542 NIYATADRWLDVCLVRSKMKERGLRK 567
           +IYA A +W DV   R  ++  G+RK
Sbjct: 539 DIYAAAGKWFDVLEARQVVQRSGIRK 564



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 173/430 (40%), Gaps = 111/430 (25%)

Query: 55  QVHSHIIKKGLEQD----HSLVAHFISL------------CHSLATPLSYSTA------- 91
           QVH+  +++G   D    ++L+A + +L            C  +A  +S++T        
Sbjct: 116 QVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKC 175

Query: 92  --------VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
                   VF+ +   N   W+T++ GY+          +F R+                
Sbjct: 176 GEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRM---------------- 219

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
                        AI   V+ W          S++  + +   +  ARK+FDEMP RN+V
Sbjct: 220 ------------PAIGRNVVTW---------NSMVTGFARHGLLPLARKMFDEMPVRNLV 258

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PER 262
           SW AM+ GY+   D+  A+ +FD+MPE+  VSW  +I G  + G  +   +LF  M  E 
Sbjct: 259 SWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTES 318

Query: 263 NV-------VSY----------------------------------TTMIDGYAKVGDMT 281
           NV       VS                                     +ID YAK G   
Sbjct: 319 NVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTD 378

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            A  +F +   ++V AW+ALI+  A NG   ++V  F  M     +P++   V +++ACS
Sbjct: 379 IAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACS 438

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSY 400
             G +D        ++ +            +VDM  + G ++ A EL  +MP   DV+ +
Sbjct: 439 HGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVF 498

Query: 401 CSMIKGLSIH 410
            +++    +H
Sbjct: 499 GALLGACRMH 508



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKG--LEQDHSLVAHFISLCHSLATPLSYSTAV 92
           ++ ++++  C   T L +   VH+ I K    L  +++L A  I + ++       +  +
Sbjct: 325 VTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDM-YAKCGRTDIAVKI 383

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           FN +   N   WN L+   + N    +    F ++ R    P+  TF  V+ ACSH   V
Sbjct: 384 FNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLV 443

Query: 153 REG-TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
            EG     +     GV  +V     ++D+ G+   +  A ++   MP
Sbjct: 444 DEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP 490


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/536 (35%), Positives = 302/536 (56%), Gaps = 40/536 (7%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT-PLSYSTAVFNRIVNPN 100
           +L +KC     L Q+H+ +I  GL    S++   I +   + +  + Y+  +F +I  P+
Sbjct: 18  SLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPD 77

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F+WNT+++G +Q  +     +++ ++      PDK+TF  V+KAC+ +  V+ G  IH 
Sbjct: 78  IFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHG 137

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V++ G   + FV  +LI  +                               A+ GDL  
Sbjct: 138 KVLKSGFQSNTFVRNTLIYFH-------------------------------ANCGDLAT 166

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A+ +FD   +R  V W+AL  G  + G L  ARQLFDEMP +++VS+  MI  YAK G+M
Sbjct: 167 ARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEM 226

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR LF+  P +DVV W+A+I+GY  +    EA+++F  M     +PD+  ++S++SA 
Sbjct: 227 EKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSAS 286

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA----ALVDMNAKCGNMDRAAELFETMPNRD 396
           + +G+L+    +   + RS  D+    +      AL+DM AKCG++  A E+F+ M  +D
Sbjct: 287 ADLGDLE----IGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKD 342

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
             S+ S+I GL++HGH  ++++LF  ML   + P+E+ F  VL ACSH G V +G  +F 
Sbjct: 343 TSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFN 402

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+NV+ I P+ +HY CMVD+LGR G L  A++ +++M +EP+A  W  LLGAC+++ D+
Sbjct: 403 LMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDV 462

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELG     +L ++    +G YVLLSNIYA+   W  V  VR  M + G++K  G S
Sbjct: 463 ELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHS 518


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 312/534 (58%), Gaps = 14/534 (2%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           + L Q+H+ +++ GL  D    +  ++ C    +  L Y+  VF++I NP ++  N++++
Sbjct: 2   SQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIR 61

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           G +  +   E    +  ++ +  +PD+YTFP + K+C    +  EG  IH    + G   
Sbjct: 62  GCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCR---NSSEGKQIHCHSTKLGFAS 118

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D +   +L+++Y     +  ARKVFD+M ++ VVSW  MI  +A      EA  +FD M 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 230 ERSNVSWNAL-----IGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDM 280
           +  NV  N +     +    +  DL   +++ + + E    R+VV  T ++D Y K G +
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR LF+ A ++++ +W+ +I+G+ ++   +EA+ +F +M +K ++ D+  + SL+ AC
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           + +G L+L  W+ +Y+ +  +D+  A +  ALVDM AKCG+++ A ++F  MP +DV+++
Sbjct: 299 THLGALELGKWLHAYIKKQRIDVDVA-LGTALVDMYAKCGSIETAIQVFHEMPEKDVMTW 357

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I GL++ G    A+  FD M  +G+ PD + F  VL ACSH G V++G   F +M +
Sbjct: 358 TALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSD 417

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I P+ EHY  +VD+LGR G +  A EL+ SMP+ P     G LLGAC+++ ++E  E
Sbjct: 418 TYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAE 477

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             A +L E++P ++G+YVLLSNIY ++ +W +    R  M ERG+RK PGCS +
Sbjct: 478 RAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQI 531



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 182/384 (47%), Gaps = 17/384 (4%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQD---HSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L K C+  +   Q+H H  K G   D    + + +  S C  L +    +  VF+++ +
Sbjct: 93  SLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVS----ARKVFDKMED 148

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTA 157
                W T++  ++Q  +  E   +F R+++ E V P++ T   V+ AC+    +     
Sbjct: 149 KTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKR 208

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH  +   G    V + T L+D+Y K   +  AR +FD+  E+N+ SW  MI G+    +
Sbjct: 209 IHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSN 268

Query: 218 LVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTT 269
             EA  +F  M  +      V+  +L+     +G L   + L   + ++    +V   T 
Sbjct: 269 YEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTA 328

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++D YAK G + +A  +F   P++DV+ W+ALI G A  GQ + A++ F +M  K V+PD
Sbjct: 329 LVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPD 388

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
               V +++ACS  G +D      + +S ++           LVD+  + G +  A EL 
Sbjct: 389 AITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELI 448

Query: 390 ETMPNR-DVVSYCSMIKGLSIHGH 412
           ++MP   D      ++    IHG+
Sbjct: 449 KSMPMAPDQFVLGGLLGACRIHGN 472


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/543 (37%), Positives = 308/543 (56%), Gaps = 14/543 (2%)

Query: 42  TLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+K C  +  L     VH+ +  +GL  + +L A  ++  ++       +  VF+R+  
Sbjct: 230 SLLKLCAARADLATGRAVHAQLAARGLSPE-ALAATALANMYAKCRRPGDARRVFDRMPA 288

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTA 157
            +   WN L+ GY++N        + VR+  E+   PD  T   V+ AC+   ++     
Sbjct: 289 RDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACRE 348

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA  +R G DE V V T+++D+Y K   +  ARKVFD M +RN VSW AMI GYA  GD
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408

Query: 218 LVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTT 269
             EA  +F  M     + ++VS  A +    ++G L   R++ + +     E NV     
Sbjct: 409 ATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNA 468

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y K      A  +F+    +  V+W+A+I G  QNG  ++AV++FS M  +NV+PD
Sbjct: 469 LITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPD 528

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
            F LVS++ A + + +   + W+  Y  R H+D    +V+ AL+DM AKCG +  A  LF
Sbjct: 529 SFTLVSIIPALADISDPLQARWIHGYSIRLHLD-QDVYVLTALIDMYAKCGRVSIARSLF 587

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
            +  +R V+++ +MI G   HG G+ AV LF+ M S G  P+E  F  VL+ACSH GLV+
Sbjct: 588 NSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVD 647

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G  +F +M+  Y + P  EHY  MVDLLGR G L  A+  +  MP+EP  S +GA+LGA
Sbjct: 648 EGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGA 707

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CKL+ ++EL E  A R+FELEP+    +VLL+NIYA A  W DV  VR+ M+++GL+K P
Sbjct: 708 CKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTP 767

Query: 570 GCS 572
           G S
Sbjct: 768 GWS 770



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 189/393 (48%), Gaps = 32/393 (8%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           P   TF  ++K C+    +  G A+HA +   G+  +    T+L ++Y K +    AR+V
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRV 282

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA--LIGGLVKIGDLR- 250
           FD MP R+ V+W A++ GYA  G    A  +   M E      +A  L+  L    D + 
Sbjct: 283 FDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQA 342

Query: 251 ----------SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
                     + R  FDE     V   T ++D Y K G + SAR +F+   DR+ V+W+A
Sbjct: 343 LGACREVHAFAVRGGFDE----QVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +I GYA+NG   EA+ +F  M  + V   +  +++ + AC ++G LD    V   L R  
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           ++ S  +V+ AL+ M  KC   D AA++F+ +  +  VS+ +MI G + +G    AV LF
Sbjct: 459 LE-SNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLF 517

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVG-LVEDGWRFFEAM-----QNVYAIVPSPEHYACM 474
            RM  E + PD      ++ A + +   ++  W    ++     Q+VY +         +
Sbjct: 518 SRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTA-------L 570

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +D+  + G +  A  L NS   + H   W A++
Sbjct: 571 IDMYAKCGRVSIARSLFNSAR-DRHVITWNAMI 602


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 187/489 (38%), Positives = 293/489 (59%), Gaps = 9/489 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+R+   +   WNT++ GY+QN        + +R+  E   PD  T   ++ A + V S
Sbjct: 232 MFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS 291

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +R G +IH   +R G +  V V T+L+D+Y K   +  AR +FD M  + VVSW +MI G
Sbjct: 292 LRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDG 351

Query: 212 YASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSAR---QLFDEMPERNV 264
           Y   GD   A  +F  M     E +NV+    +     +GD+   R   +L D++   + 
Sbjct: 352 YVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSD 411

Query: 265 VS-YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VS   ++I  Y+K   +  A  +FE    + +V+W+A+I GYAQNG+ +EA+  F  M  
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL 471

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           +N++PD F +VS++ A +++  L  + W+   + R+ +D     V  ALVDM AKCG + 
Sbjct: 472 QNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLD-KNVFVATALVDMYAKCGAVH 530

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A +LF+ M  R V ++ +MI G   HG G+ A+ LF++M  E + P+EV F  VL+ACS
Sbjct: 531 TARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLVE+G+++F +M+  Y + P+ +HY  MVDLLGR   L  A++ +  MP+EP  S +
Sbjct: 591 HSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVF 650

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GA+LGAC+++ ++ELGE  ANR+F+L+P + G +VLL+NIYATA  W  V  VR+ M+++
Sbjct: 651 GAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKK 710

Query: 564 GLRKIPGCS 572
           G++K PG S
Sbjct: 711 GIQKTPGWS 719



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 253/516 (49%), Gaps = 41/516 (7%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           +  PS +L  L     C     LHQ    IIK GL  +H      +SL     + L  + 
Sbjct: 76  YKHPSAILLEL-----CTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGS-LHEAA 129

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            VF  I +    L++T+LKGY++NS   +  + F R+  +   P  Y F  ++K C    
Sbjct: 130 RVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNA 189

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +R+G  IH  +I  G   +VF  T ++++Y K + +  A K+FD MPER++V W  +I 
Sbjct: 190 DLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIIS 249

Query: 211 GYASVGDLVEAKTVFDL---MPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           GYA  G     KT  +L   M E      +++  +++  +  +G LR  R +        
Sbjct: 250 GYAQNG---FGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAG 306

Query: 264 VVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
             S+    T ++D Y+K G + +AR +F+    + VV+W+++I GY QNG P  A++IF 
Sbjct: 307 FESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQ 366

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M  + V+     ++  + AC+ +G+++   +V   L +  +  S   V+ +L+ M +KC
Sbjct: 367 KMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELG-SDVSVMNSLISMYSKC 425

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
             +D AAE+FE + ++ +VS+ +MI G + +G   +A+  F +M  + + PD      V+
Sbjct: 426 KRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVI 485

Query: 440 TACSHVGLVEDGWRFFEAM-------QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
            A + + ++    ++   +       +NV+           +VD+  + G + +A +L +
Sbjct: 486 PALAELSVLPQA-KWIHGLVIRTCLDKNVFVAT-------ALVDMYAKCGAVHTARKLFD 537

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
            M  E H + W A++     Y    LG+  A  LFE
Sbjct: 538 MMD-ERHVTTWNAMIDG---YGTHGLGK-AALELFE 568


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 311/533 (58%), Gaps = 13/533 (2%)

Query: 52  HLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP--NTFLWNTLL 108
           +L Q+H+ +IK G L          +    +  T L Y+ ++F     P  +T  +N L+
Sbjct: 31  YLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLM 90

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +         +   +FV ++   +V PD++T    +K+CS + ++  G  I A  ++ G+
Sbjct: 91  RALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGL 150

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             D FV +SLI +Y   ++++ A+ +FD + E  VV W A+I  Y   G+ +E   +F  
Sbjct: 151 MADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKG 210

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGD 279
           M E       ++  +++    +IGD +  + + + + E+ +V      T +ID YAK G+
Sbjct: 211 MLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGE 270

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR LF+    RDVVAWSA+ISGY Q  Q  EA+ +FS+M    V+P++  +VS++SA
Sbjct: 271 LGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSA 330

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G L+   WV SY+ R  + L+   +  ALVD  AKCG +D A E FE+MP ++  +
Sbjct: 331 CAVLGALETGKWVHSYIRRKRLSLTII-LGTALVDFYAKCGCIDDAVEAFESMPVKNSWT 389

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + ++IKG++ +G GR+A+ LF  M    + P +V F  VL ACSH  LVE+G R F++M 
Sbjct: 390 WTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMT 449

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             Y I P  EHY C+VDLLGR G +  AY+ + +MP+EP+A  W ALL +C ++ ++E+G
Sbjct: 450 QDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIG 509

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E    ++  L P ++G Y+LLSNIYA+  +W +  ++R +MK+RG+ K PGCS
Sbjct: 510 EEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCS 562


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/483 (38%), Positives = 286/483 (59%), Gaps = 39/483 (8%)

Query: 128 IREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--- 183
           +R + VP + +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +   
Sbjct: 101 MRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYRCGG 160

Query: 184 --RKEISCARKVFDEM-------------------------------PERNVVSWTAMIV 210
                +  AR+VFDEM                               PERNVVSW  ++ 
Sbjct: 161 GGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVA 220

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           G+A  GD+V A+TVFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T M
Sbjct: 221 GFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAM 280

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPD 329
           +  YAK+GD+ +A+ LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PD
Sbjct: 281 VSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPD 340

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           E  LVS++SAC+Q+G+++  NW+ S++ +S+  L+ A +  AL+DM AKCG++ RA  +F
Sbjct: 341 EATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVA-LGNALIDMFAKCGDVGRAQSIF 399

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M  R ++++ +MI G + +G  R+A+ +++ M  EG+  D   F   L AC+H GL++
Sbjct: 400 YKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQ 459

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +GW  F  M   Y I P  EHY C+VDLLGR G+L+ A   + SMP+EP    W  LL +
Sbjct: 460 EGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSS 519

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C  + + EL E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K+P
Sbjct: 520 CVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVP 579

Query: 570 GCS 572
           G S
Sbjct: 580 GSS 582



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIK 144
           L  +  +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ 
Sbjct: 290 LDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 349

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +      V +G +LID++ K  ++  A+ +F +M  R +++
Sbjct: 350 ACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 409

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT MI G+A  G   EA  V++ M     E     + A +      G L+    +F+EM 
Sbjct: 410 WTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMV 469

Query: 261 ERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD 312
           E+  +      Y  ++D   + G++  A    E+ P +  VV W  L+S    +G  +
Sbjct: 470 EQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNAE 527


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 322/557 (57%), Gaps = 51/557 (9%)

Query: 64  GLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIV-NPNTFLWNTLLKGYSQNSRFIEV 120
           GL  +    +  ++ C +L+ P  L+++ AV  +    PN ++  T+++G+ +  +    
Sbjct: 58  GLASNRFPASRLLAFC-ALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHA 116

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLID 179
            T+F R++R+    D  T    +KA +   S  E  AIH    + G + + V  G +L+ 
Sbjct: 117 LTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTE--AIHCVAFKRGFIGQSVLAGNALVH 174

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW--- 236
           +Y     +  ARK+FDEM +R+VVSWT +I GYA  G   EA  VF  M    +V W   
Sbjct: 175 MYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNE 233

Query: 237 --------------------------------------NALIGGLVKIGDLRSARQLFDE 258
                                                 NAL+    K G + +A+++FD 
Sbjct: 234 VTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDG 293

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP ++V S+T+M+  YAK GD+ +A  LF+  P+R+VV+WS +++ Y+    PDEA++IF
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIF 353

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNA 377
           +DM +  V+P +  LVS++SAC+Q+ +LD+  W+ D+Y+    ++L+  ++  A +DM A
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELT-PNLSNAFIDMFA 412

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG++  A+ LF  M +++VVS+ +MI    +HG   +A+ LF      G+ PDE  +  
Sbjct: 413 KCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIG 472

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           VL+ACSH GLV +G   F+ M+ VY I P  EHYACM+DLLG+ G L+ A+E+  SMPV 
Sbjct: 473 VLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVG 532

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
              + WGALL AC+++ ++E+G+  A++L  L+P ++G YVL+S IYA+  +W  V ++R
Sbjct: 533 ADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLR 592

Query: 558 SKMKERGLRKIPGCSSL 574
           + M++R ++K PGCSS+
Sbjct: 593 TVMRDRRVKKNPGCSSI 609



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 193/427 (45%), Gaps = 44/427 (10%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H    K+G      L  + +   ++ +  L  +  +F+ + + +   W TL+ GY++  
Sbjct: 152 IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGG 211

Query: 116 RFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              E + +F R++  E+V P++ T      A   +  +  G  +H  ++  G    V + 
Sbjct: 212 LPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLE 271

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            +L+D++GK   ++ A++VFD MP ++V SWT+M+  YA  GDL  A  +F  +P R+ V
Sbjct: 272 NALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVV 331

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNV------------------------------ 264
           SW+ ++           A ++F++M    V                              
Sbjct: 332 SWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTY 391

Query: 265 -VSY---------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
            VS+            ID +AK GD+ +A  LF    D++VV+W+ +I  +  +GQP+EA
Sbjct: 392 IVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEA 451

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           + +F +     + PDE   + ++SACS  G +         +   +    RA   A ++D
Sbjct: 452 LHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMID 511

Query: 375 MNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           +  K G +  A E+  +MP   D   + +++    +HG+        D++   GL P + 
Sbjct: 512 LLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKL--AGLDPSDS 569

Query: 434 AFTIVLT 440
              ++++
Sbjct: 570 GIYVLMS 576


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 312/556 (56%), Gaps = 41/556 (7%)

Query: 58   SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
            S++IK+ L  D   + + +       T +  +  +F +I  P    WN +++G+SQ ++ 
Sbjct: 718  SNMIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQP 777

Query: 118  IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            IE    +  +  +    +  T+P ++KAC+ + +V   T +HA V++ G D D+FV  +L
Sbjct: 778  IEAIRNYNLMYSQALFGNNLTYPFLLKACARISNV-SCTTVHARVLKLGFDSDLFVSNAL 836

Query: 178  IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-------- 229
            I  Y    E+  ARKVFDEM ER++VSW ++I GY       E   VF+ M         
Sbjct: 837  IHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDA 896

Query: 230  --------------------------ERSNVSWNALIGG-LVKIGDLRS----ARQLFDE 258
                                      E + V  +  +G  L+ +   RS    AR++FD 
Sbjct: 897  VTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDR 956

Query: 259  MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
            M +RN+VS+  MI GY K G++ +AR LF+  P RDV++W+++IS Y+Q GQ  +AV++F
Sbjct: 957  MRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLF 1016

Query: 319  SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             +M    V+PDE  + S++SAC+ +G LD+   V  Y+ +  ++ +  +V  AL+DM  K
Sbjct: 1017 QEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVN-ADIYVGNALIDMYCK 1075

Query: 379  CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
            CG +++   +FE M  RD VS+ S+I GL+++G    A++LF  ML EG+ P    F  V
Sbjct: 1076 CGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGV 1135

Query: 439  LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
            L AC+H G+V+ G  +FE+M+ VY + P  +HY C+VDLL R+G+L  AYE +  MP++P
Sbjct: 1136 LLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDP 1195

Query: 499  HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
                W  LL A +++ ++ L E+   +L E +P N+G+Y+L SN YA ++RW DV  +R 
Sbjct: 1196 DVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRR 1255

Query: 559  KMKERGLRKIPGCSSL 574
             M+E  + K    SS+
Sbjct: 1256 LMEESNVHKPSASSSV 1271



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 198/416 (47%), Gaps = 51/416 (12%)

Query: 43   LIKKCKLQTHLH--QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRI 96
            L+K C   +++    VH+ ++K G + D    ++L+  +   C      L ++  VF+ +
Sbjct: 802  LLKACARISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGFCE-----LGFARKVFDEM 856

Query: 97   VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
               +   WN+L+ GY +  R+ EV  +F  +   +   D  T   V+ AC+ +       
Sbjct: 857  SERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVD 916

Query: 157  AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            A+   +    V+ DV++G +LID+YG+R  +  AR+VFD M +RN+VSW AMI+GY   G
Sbjct: 917  AMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAG 976

Query: 217  DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSY--- 267
            +LV A+ +FD MP R  +SW ++I    + G    A +LF EM      P+   V+    
Sbjct: 977  NLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLS 1036

Query: 268  ------------------------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
                                            +ID Y K G +    S+FE    RD V+
Sbjct: 1037 ACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVS 1096

Query: 298  WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
            W+++I+G A NG  D A+ +FS M  + V+P     V ++ AC+  G +D        + 
Sbjct: 1097 WTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESME 1156

Query: 358  RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH 412
            R +           +VD+ ++ GN+ RA E  + MP + DVV +  ++    +HG+
Sbjct: 1157 RVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGN 1212


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/489 (39%), Positives = 284/489 (58%), Gaps = 42/489 (8%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           L    A PD  TFP ++KAC+ +     G A+   V + G   DVFV  + +  +     
Sbjct: 112 LCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGS 171

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGY---------------------------------- 212
           +  AR++FDE P R+VVSW  +I GY                                  
Sbjct: 172 MVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAV 231

Query: 213 ---ASVGDLVEAKTVFDLMPE---RSNVS-WNALIGGLVKIGDLRSARQLFDEMPERNVV 265
              A +GDL   K + + +     R  V   NA++   VK G L  A+ +F+ +  + VV
Sbjct: 232 SGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVV 291

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+TTMI G+A++G M  AR LF+  P+RDV  W+AL++GY QN Q  EA+ +F +M    
Sbjct: 292 SWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESK 351

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V P+E  +V+L+SACSQ+G L++  WV  Y+ R  + LS A +  +LVDM AKCGN+ +A
Sbjct: 352 VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVA-LGTSLVDMYAKCGNIKKA 410

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F+ +P+++ +++ +MI GL+ HGH  +A+  F RM+  GL PDE+ F  VL+AC H 
Sbjct: 411 ICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHA 470

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV++G +FF  M   Y +    +HY+CM+DLLGR GHL  A +L+N+MP++P A  WGA
Sbjct: 471 GLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGA 530

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           L  AC+++ +I LGE  A +L EL+P ++G YVLL+N+YA A+       VR  M+  G+
Sbjct: 531 LFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGV 590

Query: 566 RKIPGCSSL 574
            K+PGCS +
Sbjct: 591 EKVPGCSCI 599


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 321/572 (56%), Gaps = 54/572 (9%)

Query: 52  HLHQVHSHIIKKGLEQDH-----SLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
           HL Q+H+ I+      ++     S +A  I    S ++ L Y+ +VF++I NP+T   N 
Sbjct: 31  HLKQIHAQILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFSNQ 90

Query: 107 LLKGYSQNSRFIEVFTIFV----RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LL+  S++S F E  TIF+    R I   A+ D+++FP ++KA S V +   G  IH   
Sbjct: 91  LLRHLSRSS-FPEK-TIFLYHNLRAINAFAL-DRFSFPSLLKAVSKVSAFNHGLEIHGLA 147

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            + G  +D F+ T LI +Y   + I  AR +FD+M   + V+W  +I GY   G   +A 
Sbjct: 148 SKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDAL 207

Query: 223 TVF------DLMPER-------------SNVSW--------------------NALIGGL 243
            +F      D+ P+               N+S+                     ALI   
Sbjct: 208 RLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMY 267

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
              G +  AR+++D +  ++++  T M+ GYAK+G +  AR +F+   +RD+V WSA+IS
Sbjct: 268 ANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMIS 327

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           GYA++ QP EA+K+F +M  K   PD+  ++S++SACS VG L  +NW+ +Y+ RS    
Sbjct: 328 GYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRS--GF 385

Query: 364 SRA-HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            RA  V  AL+DM AKCGN+ +A E+FE MP ++V+S+ SMI   ++HG+   A+ LF R
Sbjct: 386 GRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRR 445

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M    + P+ V F  VL AC H GLVE+G + F +M N + I P+ EHY CMVDL  R  
Sbjct: 446 MKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRAN 505

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
            L+ A EL+ +MP  P+   WG+L+ AC+++ + ELGE  A RL ELEP + G+ V+LSN
Sbjct: 506 FLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSN 565

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           IYA   RW DV L+R  M  +G+ K    S +
Sbjct: 566 IYAKEKRWNDVGLIRKSMSYKGISKEKASSRI 597



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 207/443 (46%), Gaps = 45/443 (10%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L  + K     H  ++H    K G   D  +    I++  S    +  +  +F+++ +
Sbjct: 126 SLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMD-ARLLFDKMCH 184

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   WN ++ GY QN  + +   +F  +   +  PD      V+ AC H  ++  G  I
Sbjct: 185 PDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTI 244

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V   G   D  + T+LI++Y     +  ARK++D +  ++++  TAM+ GYA +G +
Sbjct: 245 HEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMV 304

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PERNVVSYTTM------- 270
            +A+ +FD M ER  V W+A+I G  +    + A +LFDEM  +R+V    TM       
Sbjct: 305 KDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISAC 364

Query: 271 -------------------------------IDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
                                          ID YAK G++  AR +FE  P ++V++WS
Sbjct: 365 SHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWS 424

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           ++I+ +A +G  D A+K+F  M   N++P+    + ++ AC   G ++    + S +   
Sbjct: 425 SMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINE 484

Query: 360 H-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAV 417
           H +  +R H    +VD+  +   + +A EL ETMP   +V+ + S++    +HG      
Sbjct: 485 HGISPTREHY-GCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGE 543

Query: 418 SLFDRMLSEGLTPDEVAFTIVLT 440
               R+L   L PD     +VL+
Sbjct: 544 FAAKRLLE--LEPDHDGALVVLS 564


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 329/554 (59%), Gaps = 22/554 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL--ATPLSYSTAVFNRIVN 98
           L+ ++ C+    L+Q+H  +IK  + ++   ++  I  C +      LSY+ +VF  I  
Sbjct: 10  LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+ ++WN++++GYS +    +    +  ++R+   PD +TFP V+KACS +  ++ G+ +
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V++ G + +++V T L+ +Y    E++   +VF+++P+ NVV+W ++I G+ +    
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189

Query: 219 VEAKTVFDLMPERSNVSWNA--LIGGLVKIG---DLRSARQL------------FDEMPE 261
            +A   F  M + + V  N   ++  LV  G   D+ + +              F     
Sbjct: 190 SDAIEAFREM-QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVG 248

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            NV+  T++ID YAK GD+ +AR LF+  P+R +V+W+++I+GY+QNG  +EA+ +F DM
Sbjct: 249 FNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDM 308

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
               + PD+   +S++ A    G   L   + +Y+S++   +  A ++ ALV+M AK G+
Sbjct: 309 LDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF-VKDAAIVCALVNMYAKTGD 367

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLT 440
            + A + FE +  +D +++  +I GL+ HGHG +A+S+F RM  +G  TPD + +  VL 
Sbjct: 368 AESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLY 427

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH+GLVE+G R+F  M++++ + P+ EHY CMVD+L R G  + A  L+ +MPV+P+ 
Sbjct: 428 ACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNV 487

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           + WGALL  C ++ ++EL + + + + E E   +G YVLLSNIYA A RW DV L+R  M
Sbjct: 488 NIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESM 547

Query: 561 KERGLRKIPGCSSL 574
           K + + K+ G SS+
Sbjct: 548 KSKRVDKVLGHSSV 561


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 206/590 (34%), Positives = 322/590 (54%), Gaps = 47/590 (7%)

Query: 29  INFPKPSCLLSALTLIKK---CKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLAT 84
           +  P P    +A T+++K   CK   H+ Q+H+HI++  +  +H L +  F     S + 
Sbjct: 1   MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVI--NHKLNSFLFNLSVSSSSI 58

Query: 85  PLSYSTAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
            LSY+  VF+ I +P  + ++N  L+  S++S        + R+       D+++F  ++
Sbjct: 59  NLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPIL 118

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           KA S V ++ EG  +H    +     D FV T  +D+Y     I+ AR VFDEM  R+VV
Sbjct: 119 KAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178

Query: 204 SWTAMIVGYASVGDLVEAKTVFD------LMPER-------------SNVSWN------- 237
           +W  MI  Y   G + EA  +F+      +MP+               N+ +N       
Sbjct: 179 TWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL 238

Query: 238 -------------ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
                        AL+      G +  AR+ F +M  RN+   T M+ GY+K G +  A+
Sbjct: 239 IENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQ 298

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F+    +D+V W+ +IS Y ++  P EA+++F +MC   ++PD   + S++SAC+ +G
Sbjct: 299 VIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLG 358

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            LD + WV S +  + ++ S   +  AL++M AKCG +D   ++FE MP R+VVS+ SMI
Sbjct: 359 ILDKAKWVHSCIHVNGLE-SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMI 417

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
             LS+HG    A+SLF RM  E + P+EV F  VL  CSH GLVE+G + F +M + Y I
Sbjct: 418 NALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNI 477

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P  EHY CMVDL GR   L+ A E++ SMPV  +   WG+L+ AC+++ ++ELG+  A 
Sbjct: 478 TPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAK 537

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           R+ ELEP + G+ VL+SNIYA   RW DV  +R  M+E+ + K  G S +
Sbjct: 538 RILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 310/548 (56%), Gaps = 12/548 (2%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGL-----EQDHSLVAHFISLCHSLATPLSY 88
           P  L + L+ ++ C   +H  Q H+ ++  G       +  +L+   ++   +  +   +
Sbjct: 7   PHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADH 66

Query: 89  STAVFNRIVNP---NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + +VF  +      + F WNTL++ ++  S    +   F R+ R    PD YTFP V+KA
Sbjct: 67  ADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRAAVAPDAYTFPAVLKA 125

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C      R G  +H   +R G+D D+F   +LI  Y +  +    RKVFD    R++VSW
Sbjct: 126 CGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDH-GVRDLVSW 184

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRSARQLFDEMPERNV 264
            +M+ GY   G++  A+ +FD M +R   SW  +I G  ++ G +  AR+LFD+MP+R++
Sbjct: 185 NSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDL 244

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V + +MIDGYA+ G M  AR LFE  P+R+V++WS +I GY + G+P+EA++ F  M   
Sbjct: 245 VCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRC 304

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            ++PD    V  ++AC+Q+G L+   W+ SYL +  + L    V  AL+DM  KCG +D 
Sbjct: 305 GIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTALIDMYVKCGRLDL 363

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +FE+MP + VV++  MI GL  HG+G  A+ LF++M +E    D+++   VLT+C+H
Sbjct: 364 AKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTH 423

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GLV +G   F  M+    + P  EHY  ++DLLGR G +  A   + +MP+EP    WG
Sbjct: 424 AGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWG 483

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           +LL +C+ +  +EL EL   RL  L   ++G YVLLSNIYA    W DV  +R  M   G
Sbjct: 484 SLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEG 543

Query: 565 LRKIPGCS 572
           ++K  G S
Sbjct: 544 MKKNIGRS 551


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 316/579 (54%), Gaps = 46/579 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL----------SY 88
           S + ++  CK    ++Q+H  +IK G+ ++ +L    +    S   P            Y
Sbjct: 7   STIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEY 66

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
               F+     + FLWN ++K +S      +   +   ++      DK++  LV+KACS 
Sbjct: 67  HVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSR 126

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  V+ G  IH  + + G+  D+F+   LI LY K   +  +R++FD MP+R+ VS+ +M
Sbjct: 127 LGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSM 186

Query: 209 IVGYASVGDLVEAKTVFDLMP----------------------------------ERSNV 234
           I GY   G +V A+ +FDLMP                                  E+  +
Sbjct: 187 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 246

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN++I G VK G +  A+ LFD MP R+VV++ TMIDGYAK+G +  A++LF+  P RD
Sbjct: 247 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 306

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           VVA++++++GY QN    EA++IFSDM  + ++ PD+  LV ++ A +Q+G L  +  + 
Sbjct: 307 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 366

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            Y+      L    +  AL+DM +KCG++  A  +FE + N+ +  + +MI GL+IHG G
Sbjct: 367 LYIVEKQFYLG-GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLG 425

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             A  +  ++    L PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY C
Sbjct: 426 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 485

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+L R+G ++ A  L+  MPVEP+   W   L AC  + + E GELVA  L      N
Sbjct: 486 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 545

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             SYVLLSN+YA+   W DV  VR+ MKER + KIPGCS
Sbjct: 546 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 584


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 316/579 (54%), Gaps = 46/579 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL----------SY 88
           S + ++  CK    ++Q+H  +IK G+ ++ +L    +    S   P            Y
Sbjct: 14  STIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEY 73

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
               F+     + FLWN ++K +S      +   +   ++      DK++  LV+KACS 
Sbjct: 74  HVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSR 133

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  V+ G  IH  + + G+  D+F+   LI LY K   +  +R++FD MP+R+ VS+ +M
Sbjct: 134 LGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSM 193

Query: 209 IVGYASVGDLVEAKTVFDLMP----------------------------------ERSNV 234
           I GY   G +V A+ +FDLMP                                  E+  +
Sbjct: 194 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 253

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN++I G VK G +  A+ LFD MP R+VV++ TMIDGYAK+G +  A++LF+  P RD
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           VVA++++++GY QN    EA++IFSDM  + ++ PD+  LV ++ A +Q+G L  +  + 
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            Y+      L    +  AL+DM +KCG++  A  +FE + N+ +  + +MI GL+IHG G
Sbjct: 374 LYIVEKQFYLG-GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLG 432

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             A  +  ++    L PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY C
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+L R+G ++ A  L+  MPVEP+   W   L AC  + + E GELVA  L      N
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             SYVLLSN+YA+   W DV  VR+ MKER + KIPGCS
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 591


>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
          Length = 616

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 310/548 (56%), Gaps = 12/548 (2%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGL-----EQDHSLVAHFISLCHSLATPLSY 88
           P  L + L+ ++ C   +H  Q H+ ++  G       +  +L+   ++   +  +   +
Sbjct: 7   PHALATLLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADH 66

Query: 89  STAVFNRIVNP---NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + +VF  +      + F WNTL++ ++  S    +   F R+ R    PD YTFP V+KA
Sbjct: 67  ADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRAAVAPDAYTFPAVLKA 125

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C      R G  +H   +R G+D D+F   +LI  Y +  +    RKVFD    R++VSW
Sbjct: 126 CGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDH-GVRDLVSW 184

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRSARQLFDEMPERNV 264
            +M+ GY   G++  A+ +FD M +R   SW  +I G  ++ G +  AR+LFD+MP+R++
Sbjct: 185 NSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDL 244

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V + +MIDGYA+ G M  AR LFE  P+R+V++WS +I GY + G+P+EA++ F  M   
Sbjct: 245 VCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRC 304

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            ++PD    V  ++AC+Q+G L+   W+ SYL +  + L    V  AL+DM  KCG +D 
Sbjct: 305 GIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTALIDMYVKCGRLDL 363

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +FE+MP + VV++  MI GL  HG+G  A+ LF++M +E    D+++   VLT+C+H
Sbjct: 364 AKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTH 423

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GLV +G   F  M+    + P  EHY  ++DLLGR G +  A   + +MP+EP    WG
Sbjct: 424 AGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWG 483

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           +LL +C+ +  +EL EL   RL  L   ++G YVLLSNIYA    W DV  +R  M   G
Sbjct: 484 SLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEG 543

Query: 565 LRKIPGCS 572
           ++K  G S
Sbjct: 544 MKKNIGRS 551


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/529 (36%), Positives = 300/529 (56%), Gaps = 45/529 (8%)

Query: 89   STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
            + A+F+ I +P+   +N ++   +Q+SR  +       +  ++ V + Y+F   + AC+ 
Sbjct: 845  ARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAA 904

Query: 149  VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
                R G  +HA V +    +DV++G++L+D+Y K +    AR+VF+ MPERN+VSW ++
Sbjct: 905  EKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSL 964

Query: 209  IVGYASVGDLVEAKTVF-----------------------DLMPERSN------------ 233
            I  Y   G + EA  +F                        L  +R              
Sbjct: 965  ITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDR 1024

Query: 234  -----VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
                 V  NAL+    K G  R+AR +FD M  R+VVS T++I GYA+  ++  A+ +F 
Sbjct: 1025 FREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFS 1084

Query: 289  AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
               +++V+AW+ LI+ YAQNG+ +EA+++F  +  ++V P  +   ++++AC  V +L L
Sbjct: 1085 QMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQL 1144

Query: 349  SNWVDSYLSRSHMDL-----SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
                  ++ +          S   V  +LVDM  K G++D  A++FE M  RD VS+ +M
Sbjct: 1145 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 1204

Query: 404  IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
            I G + +G  + A+ LF+RML    +PD V    VL+AC H GLVE+G R+F +M   + 
Sbjct: 1205 IVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHG 1264

Query: 464  IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
            I+PS +HY CM+DLLGR GHLK   EL+  M +EP A  W +LLG+C+L+ ++E+GE  A
Sbjct: 1265 IIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAA 1324

Query: 524  NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +LFEL+P+N+G YVLLSN+YA   +W DV  VRS MK RG+ K PGCS
Sbjct: 1325 GKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCS 1373



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/548 (28%), Positives = 263/548 (47%), Gaps = 45/548 (8%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           PK + + S L+   +C       Q+H HI K+  + +  L    + + +     L+ +  
Sbjct: 149 PKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDV-YGNCFLLADARR 207

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F+ I+ PN   WN +++ Y           +F R++     P  YT    + AC    +
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + EG  IHA V+R G +  V V +S++D+Y K   +  A+ +F+  P +++V  T+++ G
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER--------- 262
            AS G + +AK VF+ M ER+ VSWNA++ G ++  DL  A  LF +M +          
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387

Query: 263 -NVVSYTT-----------------------------MIDGYAKVGDMTSARSL--FEAA 290
            +V+S  T                             ++  Y+K G + SA  L  FE  
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
            +RD  +W++LISGY ++   + A+   + M S+ V P++    S ++AC+ +  L    
Sbjct: 448 SERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGM 506

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            + +Y+ R   ++    + + L+DM  KC   D +  +FE  P+RDV+ + SMI G +  
Sbjct: 507 QIHAYMIRKGYEIDDI-LRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYS 565

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G   + LFD M  +G+  D V F   L +C   G V  G  +F  M +  +I+P  EH
Sbjct: 566 GKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPRIEH 624

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y CM++LLG+ G +    + +  MP EP  + W  +   C+ Y + +LGE  A  + +  
Sbjct: 625 YECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSN 684

Query: 531 PQNAGSYV 538
           P     +V
Sbjct: 685 PLTPVQFV 692



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 181/403 (44%), Gaps = 48/403 (11%)

Query: 55   QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            QVH+ + K    +D  + +  + +      P   +  VF  +   N   WN+L+  Y QN
Sbjct: 913  QVHALVSKSPHAKDVYIGSALLDMYAKCEWP-EEARRVFEAMPERNIVSWNSLITCYEQN 971

Query: 115  SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFV 173
                E   +FV +++   VPD+ T   V+ AC+ + + REG  +HA V++     ED+ +
Sbjct: 972  GPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVL 1031

Query: 174  GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
              +L+D+Y K      AR VFD M  R+VVS T++I GYA   ++ +A+ VF  M E++ 
Sbjct: 1032 SNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV 1091

Query: 234  VSWNALIGGLVKIGDLRSARQL-------------------------------------- 255
            ++WN LI    + G+   A +L                                      
Sbjct: 1092 IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVH 1151

Query: 256  -------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
                   FD  PE +V    +++D Y K G +     +FE    RD V+W+A+I G+AQN
Sbjct: 1152 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQN 1211

Query: 309  GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
            G+  +A+ +F  M      PD   ++ ++SAC   G ++        ++  H  +     
Sbjct: 1212 GRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDH 1271

Query: 369  IAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIH 410
               ++D+  + G++    EL + M    D V + S++    +H
Sbjct: 1272 YTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLH 1314



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 185/398 (46%), Gaps = 47/398 (11%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++   S+     E  ++F  +      P   T   V+  C+  L +     +H  + 
Sbjct: 119 WNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIA 178

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY--ASVGDLVEA 221
           +     +V +GT+L+D+YG    ++ AR+ FD++ E N +SW  ++  Y  A +GD+   
Sbjct: 179 KRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMA-V 237

Query: 222 KTVFDLM-----PERSNVSW--------NALIGG-------------------------L 243
              F ++     P    VS         NAL  G                          
Sbjct: 238 DMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMY 297

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            K G + +A+ LF+  P +++V  T+++ G A  G +  A+ +FE   +R++V+W+A+++
Sbjct: 298 AKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLT 357

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           GY ++     A+ +F  M  +  + D   L S++SAC+ + ++     V ++  +     
Sbjct: 358 GYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGF-F 416

Query: 364 SRAHVIAALVDMNAKCGNMDRAAE---LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           S   +  ALV M +KCG + R+AE   LFE    RD  S+ S+I G   H     A+   
Sbjct: 417 SSPILKNALVRMYSKCGCL-RSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYAL 475

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            +M SE +TP++  F+  L AC+++ L++ G +    M
Sbjct: 476 TKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYM 512



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 167/355 (47%), Gaps = 44/355 (12%)

Query: 170  DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
            + F+  +L+  Y +   +  AR+VFDE+P  N  S+ A++  +A +G   +A+ +F  +P
Sbjct: 794  ETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIP 853

Query: 230  ERSNVSWNALIGGLVKIG-----------------------------------DLRSARQ 254
            +    S+NA+I  L +                                     D R+  Q
Sbjct: 854  DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQ 913

Query: 255  ---LFDEMPE-RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
               L  + P  ++V   + ++D YAK      AR +FEA P+R++V+W++LI+ Y QNG 
Sbjct: 914  VHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGP 973

Query: 311  PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
              EA+ +F  M      PDE  L S+MSAC+ +        V + + +S        +  
Sbjct: 974  VGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSN 1033

Query: 371  ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
            ALVDM AKCG    A  +F+ M +R VVS  S+I G +   +   A  +F +M+ + +  
Sbjct: 1034 ALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV-- 1091

Query: 431  DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
              +A+ +++ A +  G  E+  R F  ++   ++ P+   Y  +++  G    L+
Sbjct: 1092 --IAWNVLIAAYAQNGEEEEALRLFVRLKR-ESVWPTHYTYGNVLNACGNVADLQ 1143



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 149/303 (49%), Gaps = 31/303 (10%)

Query: 237  NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
            N L+    ++G L  AR++FDE+P  N  SY  ++  +A++G    AR+LF A PD D  
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 297  AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            +++A+I+  AQ+ +  +A+   + M + +   + +   S +SAC+   +      V + +
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 357  SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            S+S       ++ +AL+DM AKC   + A  +FE MP R++VS+ S+I     +G   +A
Sbjct: 919  SKSP-HAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEA 977

Query: 417  VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW----------RFFE------AMQN 460
            + LF  M+  G  PDEV    V++AC+ +    +G           RF E      A+ +
Sbjct: 978  LVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVD 1037

Query: 461  VYAIVPSPEHYACMVDLLGR----------TGHLKSA----YELLNSMPVEPHASAWGAL 506
            +YA         C+ D +            TG+ +SA     +++ S  VE +  AW  L
Sbjct: 1038 MYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVL 1097

Query: 507  LGA 509
            + A
Sbjct: 1098 IAA 1100



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 153/377 (40%), Gaps = 73/377 (19%)

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIG--------------------- 247
           I   A+ G + +A+ +FDLMP R   SWNA+I    + G                     
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 248 --------------DLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEA 289
                         DL  ARQL   + +R    NV+  T ++D Y     +  AR  F+ 
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
             + + ++W+ ++  Y   G  D AV +F  M S  V+P  + +   + AC     L+  
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS- 408
             + +++ R H      HV +++VDM AKCG MD A  LF   P +D+V   S++ GL+ 
Sbjct: 272 RCIHAFVLR-HGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLAS 330

Query: 409 -------------------------IHGHGRQ-----AVSLFDRMLSEGLTPDEVAFTIV 438
                                    + G+ R      A+ LF +M  E    D +    V
Sbjct: 331 CGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSV 390

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE-LLNSMPVE 497
           L+AC+ +  +  G     A         SP     +V +  + G L+SA   LL  M  E
Sbjct: 391 LSACTGILDIGKGEE-VHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSE 449

Query: 498 PHASAWGALLGACKLYS 514
             + +W +L+   + +S
Sbjct: 450 RDSYSWNSLISGYERHS 466



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
           +   I+  A  G +  AR LF+  P RD  +W+A+I+  ++ G P EA+ +FS+M S  +
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           +P +  + S++S C++  +L  +  +  ++++     S   +  ALVD+   C  +  A 
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQ-SNVILGTALVDVYGNCFLLADAR 206

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
             F+ +   + +S+  +++   + G G  AV +F RMLS G+ P     +  + AC    
Sbjct: 207 RAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNN 266

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHY----ACMVDLLGRTGHLKSAYELLNSMPVE 497
            +E+G R   A    + +    EH+    + +VD+  + G + +A  L N  P++
Sbjct: 267 ALEEG-RCIHA----FVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 325/558 (58%), Gaps = 26/558 (4%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           NF  PS +L A   +   +L     ++H  ++KKGL++D   V + + L +     + Y+
Sbjct: 94  NFMAPS-VLKACGQVSWTQLGK---EIHGFVLKKGLDRD-VFVGNALMLMYGECACVEYA 148

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE----EAVPDKYTFPLVIKA 145
             VF++++  +   W+T+++  S+N  F     + + LIRE    +  P +     ++  
Sbjct: 149 RLVFDKMMERDVVSWSTMIRSLSRNKEF----DMALELIREMNFMQVRPSEVAMVSMVNL 204

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFV--GTSLIDLYGKRKEISCARKVFDEMPERNVV 203
            +   ++R G A+HA VIR   +E + V   T+L+D+Y K   +  AR++F+ + ++ VV
Sbjct: 205 FADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVV 264

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEM 259
           SWTAMI G      L E   +F  M E +     ++  +LI      G L+  +QL   +
Sbjct: 265 SWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYI 324

Query: 260 PERNVVSY-----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
             RN  S      T ++D Y K  D+ +AR+LF++  +RDV+ W+A++S YAQ    D+A
Sbjct: 325 L-RNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQA 383

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
             +F  M +  V+P +  +VSL+S C+  G LDL  WV SY+ +  +++    +  ALVD
Sbjct: 384 FNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD-CILNTALVD 442

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M AKCG+++ A  LF    +RD+  + ++I G ++HG+G +A+ +F  M  +G+ P+++ 
Sbjct: 443 MYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDIT 502

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           F  +L ACSH GLV +G + FE M + + +VP  EHY CMVDLLGR G L  A+E++ SM
Sbjct: 503 FIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM 562

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
           P++P+   WGAL+ AC+L+ + +LGEL A +L E+EP+N G  VL+SNIYA A+RW D  
Sbjct: 563 PIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAA 622

Query: 555 LVRSKMKERGLRKIPGCS 572
            VR  MK  G++K PG S
Sbjct: 623 GVRKTMKTVGMKKEPGHS 640


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 293/514 (57%), Gaps = 34/514 (6%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
           +IK    QD  LV  FIS C +L+  ++ + + F  + NPN  ++N L++G        +
Sbjct: 1   MIKTNTTQDCFLVNQFISACSNLSC-INLAASAFANVQNPNVLVFNALIRGCVHCCYSEQ 59

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
               ++ ++R   +P  Y+F  +IKAC+ ++    G A+H  V + G D  VFV T+LI+
Sbjct: 60  ALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIE 119

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNAL 239
            Y                               ++ GD+  ++ VFD MPER   +W  +
Sbjct: 120 FY-------------------------------STFGDVGGSRRVFDDMPERDVFAWTTM 148

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           I   V+ GD+ SA +LFDEMPE+NV ++  MIDGY K+G+  SA  LF   P RD+++W+
Sbjct: 149 ISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWT 208

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            +++ Y++N +  E + +F D+  K + PDE  + +++SAC+ +G L L   V  YL   
Sbjct: 209 TMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQ 268

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             DL   ++ ++L+DM AKCG++D A  +F  +  +++  +  +I GL+ HG+  +A+ +
Sbjct: 269 GFDLD-VYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRM 327

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F  M  + + P+ V F  +LTAC+H G +E+G R+F +M   Y I P  EHY CMVDLL 
Sbjct: 328 FGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLS 387

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           + G L+ A E++ +M VEP++  WGALL  CKL+ ++E+  +    L  LEP N+G Y L
Sbjct: 388 KAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSL 447

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRK-IPGCS 572
           L N+YA  +RW +V  +R+ MK+ G+ K  PG S
Sbjct: 448 LVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSS 481


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 322/580 (55%), Gaps = 54/580 (9%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI----SLCHSLATPL--SYSTAVFNR- 95
            +  CK    L+++H+ +I  GL ++  L    +    S   S   P    ++  VF+  
Sbjct: 1   FLGSCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARCVFHEH 60

Query: 96  -------IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACS 147
                  + +P  FLWN ++K +S      +   +   L+ E +VP DK++  L +KACS
Sbjct: 61  HVSSSGEVEDP--FLWNVVIKSHSHGVDPRKALFLLC-LMLESSVPVDKFSLSLALKACS 117

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER------- 200
            +  V+EGT +H  +I+ G   D+F+   LI LY K   +  AR+VFD MPER       
Sbjct: 118 RLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNS 177

Query: 201 --------------------------NVVSWTAMIVGYASVGDLVE-AKTVFDLMPERSN 233
                                     N+++W +MI GYA   D V+ A+ +FD MPE+  
Sbjct: 178 MIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDL 237

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           +SWN++IGG VK G +  A+ LF+ MP R+VV++  MIDGY K+G +  A++LF+  P R
Sbjct: 238 ISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHR 297

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWV 352
           DVVA+++++SGY QN    EA+++F+ M  + ++ PDE  LV ++SA +Q+G L  +  +
Sbjct: 298 DVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDM 357

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
             Y+      LS   +  AL+DM +KCG++  A  +FE + ++ +  + +MI GL++HG 
Sbjct: 358 HLYIVEKQFPLS-GKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGL 416

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
           G  A  +  ++    + PD + F  VL ACSH GLV++G   FE M+  + I P  +HY 
Sbjct: 417 GESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 476

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           CMVD+L R+G +K A  L+  MP+EP+   W   L AC  + + E GELVA  L      
Sbjct: 477 CMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGY 536

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N  SYVLLSN+YA+   W DV  VR+ MKE+ + KIPGCS
Sbjct: 537 NPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCS 576



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 3/180 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H +I++K       L    I + +S    + ++  
Sbjct: 333 PDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDM-YSKCGSIQHAMR 391

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I + +   WN ++ G + +      F +  ++ R    PD  TF  V+ ACSH   
Sbjct: 392 VFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNACSHSGL 451

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  AR + + MP E N V W   +
Sbjct: 452 VKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFL 511


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/534 (35%), Positives = 311/534 (58%), Gaps = 42/534 (7%)

Query: 80  HSLATPLSYSTA---VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           H L +  S S A   +F+ +  P   L  TL+   S+     E+   F  L R  +    
Sbjct: 26  HDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPP 85

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
              PLV+K+C+ + + R+G  +H   I  G+  D+FV T+L+D Y K  ++ CA KVFDE
Sbjct: 86  GCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDE 145

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI-----GG--------- 242
           MP ++ +    +I GY+  GD+V+A+ +FD M  R++ SWN++I     GG         
Sbjct: 146 MPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205

Query: 243 ---------------------LVKIGDLRS---ARQLFDEMPERNVVSYTTMIDGYAKVG 278
                                  K GDL +   AR L  E   +N++ +T +++ Y K  
Sbjct: 206 RRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQ 265

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  AR  F+    RDVVAWS +I+GYAQNG+P E++++F  M + + +P+E  LV ++S
Sbjct: 266 AIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLS 325

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G+ +L   + S++   ++ L+ +++ +AL+DM  KCG++ RA  +F  M ++ V+
Sbjct: 326 ACAQLGSDELGGQIGSHVESQNLPLT-SYLGSALIDMYTKCGHVGRARSVFNRMEHKVVI 384

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ SM++GL+++G  + A++L+  M  E + P+E+ F  +LTAC+H GLV+ G  FF+ M
Sbjct: 385 TWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEM 444

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           + ++ + P  EH AC+VDLL ++G L+ AY+ +  M VEP+A  W  LL AC+ ++D+EL
Sbjct: 445 KTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVEL 504

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L A++L  LEP N+  YVLLSNIYA A  W DV  +R  M+ + ++K+   S
Sbjct: 505 AKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYS 558



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+ SH+  + L     L +  I + ++    +  + +VFNR+ +     WN++++G + N
Sbjct: 338 QIGSHVESQNLPLTSYLGSALIDM-YTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALN 396

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFV 173
               +  T++  +  E+  P++ TF  ++ AC+H   V +G +    +     V   V  
Sbjct: 397 GFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEH 456

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFD--LMPE 230
              ++DL  K   +  A K   +M  E N V W+ ++    +  D+  AK      L+ E
Sbjct: 457 CACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLE 516

Query: 231 RSNVSWNALIGGLVK----IGDLRSARQLFDEMPERNVVSYTTM-IDG 273
             N S   L+  +       GD+R  R L      + + +Y+ + +DG
Sbjct: 517 PDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDG 564


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/584 (33%), Positives = 317/584 (54%), Gaps = 49/584 (8%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++ L+++K C   + L +   +H+ +   G+E D ++    I++ +S    +S +  VF+
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITM-YSKCGEISVACEVFH 216

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           ++   N   W  +++  +Q+ +  E F ++ ++++    P+  TF  ++ +C+   ++  
Sbjct: 217 KMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNR 276

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH+ +   G++ D+ V  +LI +Y K   +  AR++FD M +R+V+SW+AMI GYA 
Sbjct: 277 GRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ 336

Query: 215 VG--DLVEAKTVFDLM-----------------------------------PERSNVSW- 236
            G  D      VF L+                                    E S V + 
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396

Query: 237 ------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                  A+     K G +  A Q+F +M  +NVV++T+ +  Y K GD++SA  +F   
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P R+VV+W+ +I+GYAQNG   +  ++ S M ++  QPD   +++++ AC  +  L+   
Sbjct: 457 PTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGK 516

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            V +   +  ++ S   V  +L+ M +KCG +  A  +F+ M NRD V++ +M+ G   H
Sbjct: 517 LVHAEAVKLGLE-SDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G +AV LF RML E ++P+E+  T V++ACS  GLV++G   F  MQ  + + P  +H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y CMVDLLGR G L+ A E + SMP EP  S W ALLGACK +++++L E  A+ + ELE
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           P  A  Y+ LSNIYA A RW D   VR  M +RGL+K  G SS+
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSI 739



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 235/503 (46%), Gaps = 46/503 (9%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  + + G+E D  L    I+  +S    ++ +  VF R+   +   W++++  Y+ N+
Sbjct: 78  VHKQLDELGVEIDIYLGNSLINF-YSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNN 136

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              + F  F R+      P++ TF  ++KAC++   + +G  IH  V   G++ DV V T
Sbjct: 137 HPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVAT 196

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +LI +Y K  EIS A +VF +M ERNVVSWTA+I   A    L EA  +++ M +     
Sbjct: 197 ALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP 256

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLF 287
           + V++ +L+        L   R++   + ER    +++    +I  Y K   +  AR +F
Sbjct: 257 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIF 316

Query: 288 EAAPDRDVVAWSALISGYAQNGQP-----DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           +    RDV++WSA+I+GYAQ+G       DE  ++   M  + V P++   +S++ AC+ 
Sbjct: 317 DRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTA 376

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRA----------------------------HVIA--AL 372
            G L+    + + LS+   +L R+                            +V+A  + 
Sbjct: 377 HGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSF 436

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           + M  KCG++  A ++F  MP R+VVS+  MI G + +G   +   L   M +EG  PD 
Sbjct: 437 LSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDR 496

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           V    +L AC  +  +E G +   A      +         ++ +  + G +  A  + +
Sbjct: 497 VTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFD 555

Query: 493 SMPVEPHASAWGALLGACKLYSD 515
            M       AW A+L     + D
Sbjct: 556 KMS-NRDTVAWNAMLAGYGQHGD 577



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 223/444 (50%), Gaps = 23/444 (5%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  VI+ C+      +G  +H  +   GV+ D+++G SLI+ Y K ++++ A +VF  M
Sbjct: 58  TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRM 117

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSAR 253
             R+VV+W++MI  YA      +A   F+ M     E + +++ +++        L   R
Sbjct: 118 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGR 177

Query: 254 QLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           ++   +     E +V   T +I  Y+K G+++ A  +F    +R+VV+W+A+I   AQ+ 
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHR 237

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           + +EA +++  M    + P+    VSL+++C+    L+    + S++S   ++     V 
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI-VA 296

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG-----RQAVSLFDRML 424
            AL+ M  KC ++  A E+F+ M  RDV+S+ +MI G +  G+       +   L +RM 
Sbjct: 297 NALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMR 356

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
            EG+ P++V F  +L AC+  G +E G +    +  V   +      A + ++  + G +
Sbjct: 357 REGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTA-IFNMYAKCGSI 415

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL-VANRLF-ELEPQNAGSYVLLSN 542
             A ++ + M    +  AW + L    +Y  I+ G+L  A ++F E+  +N  S+ L+  
Sbjct: 416 YEAEQVFSKMA-NKNVVAWTSFLS---MY--IKCGDLSSAEKVFSEMPTRNVVSWNLMIA 469

Query: 543 IYATADRWLDVCLVRSKMKERGLR 566
            YA     + V  + S MK  G +
Sbjct: 470 GYAQNGDIVKVFELLSSMKAEGFQ 493


>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 488

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/481 (37%), Positives = 283/481 (58%), Gaps = 17/481 (3%)

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +++GY+ N    +  +++  L++    P  +T+P V+K+C+ +    +G  +H  +++ G
Sbjct: 1   MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60

Query: 167 VDEDVFVGTSLIDLYGKRKEI-----------SCARKVFDEMPERNVVSWTAMIVGYASV 215
              +  V  +L  LY    +            S ARKVFDEM  R+V  W  MI+ Y S 
Sbjct: 61  FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
           GD+  A+ +F+ M +R  VSWN +I G +K+G++  AR+LF++MPE+NVVS+T+MI  YA
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYA 180

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K GD+ +AR  F   P R+VV+W+++IS Y Q+G   EA+ +F+ M S+ + PD +  VS
Sbjct: 181 KAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVS 240

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMP 393
           + SACS +GNL L   +   +     D S+  VIA  AL++M AKCG+++RA  LF  + 
Sbjct: 241 VFSACSHLGNLMLGTKIHYAID----DFSQLGVIAATALIEMYAKCGDINRAFNLFIKIG 296

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +DV  +  M+K L++HG  + A+ LF  M  +GL P++  F   L ACSH G+VE+G  
Sbjct: 297 KKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQT 356

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F+ M+  Y I P  EH+ C+VDLL R G L+ A ++++ MP E   + WGALLG CKL 
Sbjct: 357 IFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLR 416

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
            D +    +  R  +L  +  G +V  SN+YA+ ++W +    R KM+   + K  G SS
Sbjct: 417 GDFKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSS 476

Query: 574 L 574
           +
Sbjct: 477 V 477



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 167/353 (47%), Gaps = 47/353 (13%)

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           L ++    +S +  +FN + + +T  WNT++ GY +    ++   +F      E +P+K 
Sbjct: 115 LRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELF------EKMPEK- 167

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
                                   V+ W         TS+I  Y K  +++ AR  F++M
Sbjct: 168 -----------------------NVVSW---------TSMISAYAKAGDLATARMFFNKM 195

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSAR 253
           P+RNVVSW +MI  Y   GD  EA  +F+ M          ++ ++      +G+L    
Sbjct: 196 PQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGT 255

Query: 254 QL---FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           ++    D+  +  V++ T +I+ YAK GD+  A +LF     +DV  W+ ++   A +GQ
Sbjct: 256 KIHYAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQ 315

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
             +A+K+FS M  + ++P++F  +  + ACS  G ++    +   + + +    R     
Sbjct: 316 AQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFG 375

Query: 371 ALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            +VD+ ++ G ++ A ++ + MP   DV  + +++ G  + G  ++A  + +R
Sbjct: 376 CIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVER 428


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/534 (35%), Positives = 311/534 (58%), Gaps = 42/534 (7%)

Query: 80  HSLATPLSYSTA---VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           H L +  S S A   +F+ +  P   L  TL+   S+     E+   F  L R  +    
Sbjct: 26  HDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPP 85

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
              PLV+K+C+ + + R+G  +H   I  G+  D+FV T+L+D Y K  ++ CA KVFDE
Sbjct: 86  GCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDE 145

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI-----GG--------- 242
           MP ++ +    +I GY+  GD+V+A+ +FD M  R++ SWN++I     GG         
Sbjct: 146 MPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205

Query: 243 ---------------------LVKIGDLRS---ARQLFDEMPERNVVSYTTMIDGYAKVG 278
                                  K GDL +   AR L  E   +N++ +T +++ Y K  
Sbjct: 206 RRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCR 265

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  AR  F+    RDVVAWS +I+GYAQNG+P E++++F  M + + +P+E  LV ++S
Sbjct: 266 AIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLS 325

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G+ +L   + S++   ++ L+ +++ +AL+DM  KCG++ RA  +F  M ++ V+
Sbjct: 326 ACAQLGSDELGGQIGSHVESQNLPLT-SYLGSALIDMYTKCGHVGRARSVFNRMEHKVVI 384

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ SM++GL+++G  + A++L+  M  E + P+E+ F  +LTAC+H GLV+ G  FF+ M
Sbjct: 385 TWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEM 444

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           + ++ + P  EH AC+VDLL ++G L+ AY+ +  M VEP+A  W  LL AC+ ++D+EL
Sbjct: 445 KTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVEL 504

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L A++L  LEP N+  YVLLSNIYA A  W DV  +R  M+ + ++K+   S
Sbjct: 505 AKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYS 558



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 10/228 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+ SH+  + L     L +  I + ++    +  + +VFNR+ +     WN++++G + N
Sbjct: 338 QIGSHVESQNLPLTSYLGSALIDM-YTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALN 396

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFV 173
               +  T++  +  E+  P++ TF  ++ AC+H   V +G +    +     V   V  
Sbjct: 397 GFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEH 456

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFD--LMPE 230
              ++DL  K   +  A K   +M  E N V W+ ++    +  D+  AK      L+ E
Sbjct: 457 CACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLE 516

Query: 231 RSNVSWNALIGGLVK----IGDLRSARQLFDEMPERNVVSYTTM-IDG 273
             N S   L+  +       GD+R  R L      + + +Y+ + +DG
Sbjct: 517 PDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDG 564


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 312/562 (55%), Gaps = 87/562 (15%)

Query: 58  SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +H++K G ++DH  V + I   ++   P+ ++  +F+ + +     WN ++ GY +    
Sbjct: 123 AHVLKSGYDRDH-YVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNE 181

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            E  T+F                       HV+  +E   I   VI W         T++
Sbjct: 182 EEASTLF-----------------------HVMGDQE---ISRNVITW---------TTM 206

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV--- 234
           I  + K+  +  AR  FD+MPER+VVSW AM+ GYA  G   E   +F+ M    NV   
Sbjct: 207 ITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPD 266

Query: 235 --SW------------------------------------NALIGGLVKIGDLRSARQLF 256
             +W                                     AL+    K G+L +A ++F
Sbjct: 267 ETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIF 326

Query: 257 DEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           +++     R+ V +  MI  YA+VGD+ SAR LF+  P RD V+W+++I+GY QNG+  +
Sbjct: 327 EQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVK 386

Query: 314 AVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           A+K+F +M  S++ +PDE  +VS+ SAC  +G L L NW  S L  +H+ +S + V  +L
Sbjct: 387 AIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISIS-VYNSL 445

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           + M ++CG+M  A  +F+ M  RD+VSY ++I G + HGHG +++ L  +M  +G+ PD 
Sbjct: 446 ISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDR 505

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + +  +LTACSH GL+ +G R FE+++      P  +HYACM+D+LGR G L+ A +L+ 
Sbjct: 506 ITYIAILTACSHAGLLGEGQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLIQ 560

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           SMP+EPHA  +G+LL A  ++  +ELGEL A +LF++EP N+G+YVLLSNIYA+A RW D
Sbjct: 561 SMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWKD 620

Query: 553 VCLVRSKMKERGLRKIPGCSSL 574
              VR  M+++G++K  G S L
Sbjct: 621 GDKVRDTMRKQGVKKTTGLSWL 642



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 148/500 (29%), Positives = 238/500 (47%), Gaps = 81/500 (16%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           L+  +++ K      L Q+H+ ++   L   +  V   ++ C  L  P SY+  +F+   
Sbjct: 4   LNNTSIVSKITNLHRLRQLHAQLVHHSLHHQNHWVVLLLTQCTRLLAPSSYTCHIFHAAT 63

Query: 98  NPNTFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREG 155
           +P+  ++  +LK YSQ     +V  ++F  ++R   + P+   + +++K+        E 
Sbjct: 64  HPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAG-----SES 118

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
               A V++ G D D +V   ++ +Y K   I  ARK+FDEMP+R V  W  MI GY   
Sbjct: 119 MLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKC 178

Query: 216 GDLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           G+  EA T+F +M +    R+ ++W  +I G  K G+L++AR  FD+MPER+VVS+  M+
Sbjct: 179 GNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAML 238

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDE 330
            G                               YAQ G P+E +++F+DM S  NVQPDE
Sbjct: 239 SG-------------------------------YAQGGAPEETIRLFNDMLSPGNVQPDE 267

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              V+++S+CS +G+  LS  +   L  +        V  AL+DM+AKCGN++ A ++FE
Sbjct: 268 TTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFE 327

Query: 391 T----------------------------------MPNRDVVSYCSMIKGLSIHGHGRQA 416
                                              MP RD VS+ SMI G + +G   +A
Sbjct: 328 QLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKA 387

Query: 417 VSLFDRML-SEGLTPDEVAFTIVLTACSHVGLVEDG-WRFFEAMQNVYAIVPSPEHYACM 474
           + LF+ M+ SE   PDEV    V +AC H+G +  G W      +N   I  S   Y  +
Sbjct: 388 IKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISV--YNSL 445

Query: 475 VDLLGRTGHLKSAYELLNSM 494
           + +  R G ++ A  +   M
Sbjct: 446 ISMYSRCGSMQDAVLIFQEM 465


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 313/561 (55%), Gaps = 50/561 (8%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN---------PNTFLWNTL 107
           H+ +IK G+ ++ +L    +      A+P  Y  A F R V           + +LWN +
Sbjct: 2   HARLIKTGIIKNSNLTTRIV--LAFAASPRPY-LAEFARFVFHEYHYGGEVEDPYLWNAM 58

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +K +S  +       +F  L+ E  VP DK++  LV+KACS +  V+ G  IH  + + G
Sbjct: 59  IKSHSHGTDPRRALLLFC-LMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTG 117

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           +  D+F+   LI LY K   +  AR++FD MP+R+ VS+ +MI GY   G +  A  +FD
Sbjct: 118 LWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFD 177

Query: 227 LMP----------------------------------ERSNVSWNALIGGLVKIGDLRSA 252
           LMP                                  E+  +SWN++I G VK G +  A
Sbjct: 178 LMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDA 237

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + LFD +P R+VV++ TMIDGYAK+G +  A++LF+  P RDVVA++++++GY QN    
Sbjct: 238 KDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHM 297

Query: 313 EAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           EA++IFSDM  + ++ PDE  LV ++SA +Q+G L  +  +  Y+      L    +  A
Sbjct: 298 EALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLG-GKLGVA 356

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+DM +KCG++  A  +FE + N+ +  + +MI GL+IHG G  A  +  ++    + PD
Sbjct: 357 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPD 416

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           ++ F  VL ACSH GLV++G   FE M+  + I P  +HY CMVD+L R+G ++ A  L+
Sbjct: 417 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 476

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             MP+EP+   W   L AC  + + E GELVA  L      N  SYVLLSN+YA+   W 
Sbjct: 477 EEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWK 536

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           DV  VR+ MKER + KIPGCS
Sbjct: 537 DVRRVRTMMKERKIEKIPGCS 557



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 185/437 (42%), Gaps = 80/437 (18%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  + K GL  D  L    I L       L ++  +F+R+   ++  +N+++ GY + 
Sbjct: 108 QIHGFLKKTGLWSDLFLQNCLIGLYLKCGC-LGFARQIFDRMPQRDSVSYNSMIDGYVKC 166

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   +F  + RE  + +  ++  +I   +      EG  I + +     ++D+   
Sbjct: 167 GSIESASELFDLMPRE--MKNLISWNSLISGYAQT---SEGVDIASKLFAEMPEKDLISW 221

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            S+ID Y K   I  A+ +FD +P R+VV+W  MI GYA +G + +AKT+FD MP R  V
Sbjct: 222 NSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVV 281

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVS---------------------------- 266
           ++N+++ G V+      A ++F +M + + +S                            
Sbjct: 282 AYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 341

Query: 267 ------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
                          +ID Y+K G +  A  +FE   ++ +  W+A+I G A +G  + A
Sbjct: 342 IVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 401

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
             +   +  ++++PD+   V +++ACS  G +         + R H    R      +VD
Sbjct: 402 FDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 461

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           + ++ G+++ A  L E MP                                  + P++V 
Sbjct: 462 ILSRSGSIELAKNLIEEMP----------------------------------IEPNDVI 487

Query: 435 FTIVLTACSHVGLVEDG 451
           +   LTACSH    E G
Sbjct: 488 WRTFLTACSHHKEFETG 504



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 10/240 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H +I++K       L    I + +S    + ++  
Sbjct: 314 PDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDM-YSKCGSIQHAML 372

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I N +   WN ++ G + +      F + +++ R    PD  TF  V+ ACSH   
Sbjct: 373 VFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGL 432

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ + +EMP E N V W   +
Sbjct: 433 VKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 492

Query: 210 VGYA-----SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
              +       G+LV    +  L  + +  S+  L       G  +  R++   M ER +
Sbjct: 493 TACSHHKEFETGELVAKHLI--LQADYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKI 550


>gi|334186821|ref|NP_194007.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635615|sp|P0C8Q5.1|PP336_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g22760
 gi|332659255|gb|AEE84655.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 578

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 314/565 (55%), Gaps = 37/565 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLATPL-SYSTAVFNRIVNPN 100
            +++C +     QVH+ ++         ++ H  +      +  + +Y   +       +
Sbjct: 9   FLQRCVVLEQAKQVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHD 68

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           +F W  L++  SQ+ +F E   +++ +      P  +    V++AC  + ++ +G  IHA
Sbjct: 69  SFSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHA 128

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             ++ G+   V+V T L+ LY +   I  A+K FD++ E+N VSW +++ GY   G+L E
Sbjct: 129 QALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDE 188

Query: 221 AKTVFDLMPERSNVSWN-------------------------------ALIGGLVKIGDL 249
           A+ VFD +PE+  VSWN                                LIGG V   ++
Sbjct: 189 ARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREM 248

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           + AR  FD MP++N VS+ TMI GY K+GD+ SA  LF     +D + + A+I+ Y QNG
Sbjct: 249 KLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNG 308

Query: 310 QPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           +P +A+K+F+ M  +N  +QPDE  L S++SA SQ+GN     WV+SY++   + +    
Sbjct: 309 KPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDL- 367

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           +  +L+D+  K G+  +A ++F  +  +D VSY +MI G  I+G   +A SLF  M+ + 
Sbjct: 368 LSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKK 427

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           + P+ V FT +L+A SH GLV++G++ F +M++ + + PS +HY  MVD+LGR G L+ A
Sbjct: 428 IPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDMLGRAGRLEEA 486

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
           YEL+ SMP++P+A  WGALL A  L++++E GE+  +   +LE    G    L+ IY++ 
Sbjct: 487 YELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSV 546

Query: 548 DRWLDVCLVRSKMKERGLRKIPGCS 572
            RW D   VR  +KE+ L K  GCS
Sbjct: 547 GRWDDARTVRDSIKEKKLCKTLGCS 571


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 318/568 (55%), Gaps = 51/568 (8%)

Query: 48  KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL-WNT 106
           K ++   Q+H+ I++  L    SL++  +S+  +L   L  S  +FN + +P T L W +
Sbjct: 19  KSKSQAKQLHAQILRTSLPSP-SLLSTILSIYSNL-NLLHDSLLIFNSLPSPPTTLAWKS 76

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +++ Y+ +  F+   + F++++     PD   FP V+K+C+ +  +R G ++H  +IR G
Sbjct: 77  IIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLG 136

Query: 167 VDEDVFVGTSLIDLYGK---RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           +  D++   +L+++Y K    +E++  +KVFDE    +V S       Y  +G L   + 
Sbjct: 137 MGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY--LGSL---RK 191

Query: 224 VFDLMPERSNVSWNALIGGLVKIG---------------DLR-------SARQLFDE--- 258
           VF++MP+R  VSWN +I G  + G               DLR       S   +F E   
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251

Query: 259 -MPERNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
            +  + +  Y             +++ID YAK   +  +  +F   P  D ++W+++I+G
Sbjct: 252 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 311

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
             QNG  DE +K F  M    ++P+     S+M AC+ +  L L   +  Y+ RS  D  
Sbjct: 312 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD-G 370

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              + +ALVDM AKCGN+  A  +F+ M   D+VS+ +MI G ++HGH   A+SLF RM 
Sbjct: 371 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 430

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
            EG+ P+ VAF  VLTACSH GLV++ W++F +M   Y I+P  EHYA + DLLGR G L
Sbjct: 431 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 490

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
           + AYE ++ M +EP  S W  LL AC+++ +IEL E V+ +LF ++PQN G+YVLLSNIY
Sbjct: 491 EEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIY 550

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + A RW D   +R  M+++G++K P CS
Sbjct: 551 SAAGRWKDARKLRIAMRDKGMKKKPACS 578


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/511 (37%), Positives = 290/511 (56%), Gaps = 36/511 (7%)

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           V  + FLWN ++K +S          +F  +I      DK++  LV+KACS +  V  G 
Sbjct: 54  VEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGM 113

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H  + + G+  D+F+   LI LY K   +  AR+VFD MP+R+ VS+ +MI GY   G
Sbjct: 114 QVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCG 173

Query: 217 DLVEAKTVFDLMP----------------------------------ERSNVSWNALIGG 242
            +  A+ +FDLMP                                  E+  +SWN+LI G
Sbjct: 174 LIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDG 233

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
            VK   +  A+ LFD MP ++VV++ TMIDGYAK+G +  A+ LF+  P RDVVA+++++
Sbjct: 234 YVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMM 293

Query: 303 SGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           +GY QN    EA+ IF+DM  + ++ PDE  LV ++SA +Q+G L  +  +  Y+  +  
Sbjct: 294 AGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKF 353

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
            L    +  AL+D  +KCG++ ++  +FE + N+ +  + +MI GL+IHG G  A  +  
Sbjct: 354 RLG-GKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLL 412

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
           ++    + PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY CMVD+L R+
Sbjct: 413 QIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRS 472

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541
           G ++ A  L+  MP+EP+   W   L AC  + + E GELVA  LF     N  S+VLLS
Sbjct: 473 GSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLS 532

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N+YA+   W +V  VR+ MKER LRKIPGCS
Sbjct: 533 NMYASFGMWKEVRRVRTTMKERKLRKIPGCS 563



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 170/381 (44%), Gaps = 50/381 (13%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH  + K G+  D  L    I L       L ++  VF+R+   ++  +N+++ GY + 
Sbjct: 114 QVHGFLRKTGIYSDLFLQNCLIGLYLKCGC-LGFARQVFDRMPQRDSVSYNSMIDGYVKC 172

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC--SHVLSVREGTAIHAAVIRWGVDEDVF 172
                   +F  + RE+         L+   C  S      +G  + + +     ++D+ 
Sbjct: 173 GLIESARELFDLMPREKK-------NLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLI 225

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
              SLID Y K + I  A+ +FD MP ++VV+W  MI GYA +G + +AK +FD MP+R 
Sbjct: 226 SWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRD 285

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-------------------------- 266
            V++N+++ G V+      A  +F++M + + +S                          
Sbjct: 286 VVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIH 345

Query: 267 --------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                            +ID Y+K G +  +  +FE   ++ +  W+A+I G A +G  +
Sbjct: 346 LYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGE 405

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
            A  +   +  ++++PD+   + +++ACS  G +         + R H    +      +
Sbjct: 406 SAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCM 465

Query: 373 VDMNAKCGNMDRAAELFETMP 393
           VD+ ++ G+++ A  L E MP
Sbjct: 466 VDILSRSGSIELAKNLIEEMP 486



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 10/240 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H +I+         L    I   +S    +  S  
Sbjct: 320 PDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALID-TYSKCGSIQKSMR 378

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I N +   WN ++ G + +      F + +++ +    PD  TF  V+ ACSH   
Sbjct: 379 VFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGL 438

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ + +EMP E N V W   +
Sbjct: 439 VKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 498

Query: 210 VGYAS-----VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
              ++      G+LV AK +F L    +  S+  L       G  +  R++   M ER +
Sbjct: 499 TACSNHKEFETGELV-AKHLF-LQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKL 556


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 308/554 (55%), Gaps = 40/554 (7%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
           ++   L  D S + + I       + +  +  +F +I  P    WN +++G+S + +  E
Sbjct: 1   MVNPNLRTDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNE 60

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
              ++  + R+  + +  T+  + KAC+ V  V  G+ IHA V++ G +  ++V  +LI+
Sbjct: 61  AIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALIN 120

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---------- 229
           +YG    +  A+KVFDEMPER++VSW +++ GY       E   VF+ M           
Sbjct: 121 MYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVT 180

Query: 230 ------------------------ERSNVSWNALIGGLV-----KIGDLRSARQLFDEMP 260
                                   E +NV  +  +G  +     + G +  AR +FD+M 
Sbjct: 181 MVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQ 240

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            RN+VS+  MI GY K G++ +AR LF+A   RDV++W+ +I+ Y+Q GQ  EA+++F +
Sbjct: 241 WRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKE 300

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M    V+PDE  + S++SAC+  G+LD+      Y+ +  +  +  +V  AL+DM  KCG
Sbjct: 301 MMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVK-ADIYVGNALIDMYCKCG 359

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +++A E+F+ M  +D VS+ S+I GL+++G    A+  F RML E + P   AF  +L 
Sbjct: 360 VVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILL 419

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           AC+H GLV+ G  +FE+M+ VY + P  +HY C+VDLL R+G+L+ A+E +  MPV P  
Sbjct: 420 ACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDV 479

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W  LL A +++ +I L E+   +L EL+P N+G+YVL SN YA ++RW D   +R  M
Sbjct: 480 VIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELM 539

Query: 561 KERGLRKIPGCSSL 574
           ++  ++K  G S +
Sbjct: 540 EKSNVQKPSGSSCI 553


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 204/597 (34%), Positives = 324/597 (54%), Gaps = 74/597 (12%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV 72
           H  CSS LP  SR      P P+              + HL    + ++K      H+L+
Sbjct: 80  HYRCSSKLPTASR-----LPSPT--------------EPHLPADLARLLKT--RPLHALL 118

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ---NSRFIEVFTIFVRLIR 129
           ++        A+    +  +F+ +  P   L    L G S+   +  FIEV +   R  R
Sbjct: 119 SN--------ASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHR--R 168

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
             A+P     PLV+K+C+   +  +G+  H   +  G+  DVFV T+L+D Y K  ++  
Sbjct: 169 GGAIPSG-CIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDS 227

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           A   F EMP ++ +    +I GY+  GD+ EA+ +FD MP R++ SWN++I      G+ 
Sbjct: 228 ALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEF 287

Query: 250 RSARQLFDEMPE--------------------------------------RNVVSYTTMI 271
           R A  LFD+M                                        +NV+ +T ++
Sbjct: 288 REALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALM 347

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           + Y K   +  AR  F+  P RDVVAWS +I+GY+QNG+P E++++F  M + N +P+E 
Sbjct: 348 EMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEV 407

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            LV ++SAC+Q+G+ +L   + +Y+    + L+ +++ +AL+DM  KCG++ RA  +F  
Sbjct: 408 TLVGVLSACAQLGSDELGEQIGNYIESQTLPLT-SYLGSALIDMYTKCGHVARARSVFNR 466

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  + VV++ SMI+GL+++G    A++L+ +M+ +G+ P+EV F  +LTAC+H GLV+ G
Sbjct: 467 MEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKG 526

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
             FFE M+    + P  EH AC+VDLL ++G L  AY+ +  M VEP+A  W  LL AC+
Sbjct: 527 IAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACR 586

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            ++D+EL +L A +L  LEP N+  YVLLSNIYA A  W DV  +R  M+ + L+K+
Sbjct: 587 AHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKL 643


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 208/597 (34%), Positives = 318/597 (53%), Gaps = 57/597 (9%)

Query: 23  CSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISL 78
           C  + P NF  P  +LSA T   K    T   QVH  I+K G E+D    +SL+ HF   
Sbjct: 132 CMGAVPDNFTFPF-VLSACT---KSAALTEGFQVHGAIVKMGFERDMFVENSLI-HFYGE 186

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C      +     VF+++   N   W +L+ GY++   + E  ++F  ++     P+  T
Sbjct: 187 C----GEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVT 242

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              VI AC+ +  ++ G  +   +    ++ +  +  +L+D+Y K   I  ARK+FDE  
Sbjct: 243 MVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECV 302

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PER----SNVS------------- 235
           ++N+V +  ++  Y   G   E   V   M      P+R    S VS             
Sbjct: 303 DKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKW 362

Query: 236 ------------W----NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                       W    NA+I   +K G    A ++FD M  +  VS+ ++I G+ + GD
Sbjct: 363 CHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGD 422

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M SA  +F A PD D+V+W+ +I    Q     EA+++F  M S+ +  D+  +V + SA
Sbjct: 423 MESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASA 482

Query: 340 CSQVGNLDLSNWVDSYLSRS--HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           C  +G LDL+ W+  Y+ +   H D+   H+  ALVDM A+CG+   A ++F  M  RDV
Sbjct: 483 CGYLGALDLAKWIHGYIKKKDIHFDM---HLGTALVDMFARCGDPQSAMQVFNKMVKRDV 539

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
            ++ + I  +++ G+G  A+ LFD ML +G+ PD V F  +LTA SH GLVE GW  F +
Sbjct: 540 SAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRS 599

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+++Y I P   HY CMVDLLGR G L  A  L+NSM +EP+   WG+LL AC+++ +++
Sbjct: 600 MKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVD 659

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +    A R+ EL+P+  G +VLLSNIYA+A RW DV  VR  +KE+G  K+PG SS+
Sbjct: 660 IAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSI 716



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 258/512 (50%), Gaps = 49/512 (9%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT--PLSYSTAVFNRIVNPNT 101
            KKCK  T L Q+HS I K GL      + + IS C  + T   L Y+       +  N 
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 102 -----FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
                +++++L++G+S      +   +F +L+   AVPD +TFP V+ AC+   ++ EG 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H A+++ G + D+FV  SLI  YG+  EI C R+VFD+M ERNVVSWT++I GYA  G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219

Query: 217 DLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQL---FDEMP-ERNVVSYT 268
              EA ++F  M E   R N V+   +I    K+ DL+   Q+     E+  E N +   
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVN 279

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++D Y K G +  AR +F+   D+++V ++ ++S Y + G   E + +  +M     +P
Sbjct: 280 ALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRP 339

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC--------- 379
           D   ++S +SACS++ ++    W   Y+ R+ ++    +V  A+++M  KC         
Sbjct: 340 DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLE-GWDNVCNAIINMYMKCGKQEMACRV 398

Query: 380 ----------------------GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
                                 G+M+ A ++F  MP+ D+VS+ +MI  L      ++A+
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAI 458

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LF  M SEG+T D+V    V +AC ++G + D  ++         I         +VD+
Sbjct: 459 ELFRVMQSEGITADKVTMVGVASACGYLGAL-DLAKWIHGYIKKKDIHFDMHLGTALVDM 517

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
             R G  +SA ++ N M V+   SAW A +GA
Sbjct: 518 FARCGDPQSAMQVFNKM-VKRDVSAWTAAIGA 548



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 35/165 (21%)

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF----- 454
           + S+I+G S  G G +A+ +F +++  G  PD   F  VL+AC+    + +G++      
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 455 -----------------------FEAMQNVYAIVPSPEHYACMVDLLG---RTGHLKSAY 488
                                   + M+ V+  + S  +      L+G   + G  K A 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKM-SERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 489 ELLNSM---PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
            L   M    + P++     ++ AC    D++LGE V   + ELE
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE 270


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 188/534 (35%), Positives = 309/534 (57%), Gaps = 37/534 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPNT 101
           L ++C+    + QVH+ ++ +G   D S +   + +   ++   ++++  VF++I  P+ 
Sbjct: 14  LWRRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDL 73

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV----PDKYTFPLVIKACSHVLSVREGTA 157
           F++NTL++G +  +   +  +++ R+ R  +     PDK TFP V++AC+ + +   G  
Sbjct: 74  FMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQ 133

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA V++ G + D FV  +LI ++                               AS G+
Sbjct: 134 VHAHVVKAGCESDAFVRNALIGMH-------------------------------ASCGE 162

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
           L  A  +FD       V+W+A+I G  + GD+ +AR+LFDE P ++ VS+  MI  YAK 
Sbjct: 163 LGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKR 222

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G+M  AR LF   P+RDVV+W+A+ISG+ + G    A+++F  M     +PD   ++SL+
Sbjct: 223 GEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLL 282

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRD 396
           SAC+  G++D+   + S LS   +      ++  AL+DM AKCG+M  A ++F  M ++D
Sbjct: 283 SACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDKD 342

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           V ++ S+I GL++HGH  +++ +F +ML E + PDE+ F  VL ACSH G+V+ G  +F 
Sbjct: 343 VSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFN 402

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            MQ+ Y I P+ +HY CMVD+LGR G LK A+E +++M VEP++  W  LLGAC+++ +I
Sbjct: 403 LMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEI 462

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           EL E    +L +     +G YVLLSNIYA+A  W +   +R  M + G+ K  G
Sbjct: 463 ELAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAG 516



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 138/304 (45%), Gaps = 26/304 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +FNRI   +   WN ++ G+ +    +    +F ++ R    PD  T   ++ AC+    
Sbjct: 231 LFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACADSGD 290

Query: 152 VREGTAIHAAV----IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           +  G  +H+++    +R G    V +G +LID+Y K   +  A +VF  M +++V +W +
Sbjct: 291 IDVGRRLHSSLSEMFLRTGFT--VILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNS 348

Query: 208 MIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP--- 260
           +I G A  G ++E+  VF  M +       +++ A++      G +   R+ F+ M    
Sbjct: 349 IIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHY 408

Query: 261 --ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKI 317
             E NV  Y  M+D   + G +  A    +    + + V W  L+     +G+ + A   
Sbjct: 409 RIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHA 468

Query: 318 FSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA--LVD 374
              +  ++N +  +++L+S + A +         W +S   R  MD S  +  A   +VD
Sbjct: 469 NRQLLKARNDESGDYVLLSNIYASA-------GEWSESEKMRKLMDDSGVNKQAGRTVVD 521

Query: 375 MNAK 378
            +AK
Sbjct: 522 GSAK 525


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 195/543 (35%), Positives = 316/543 (58%), Gaps = 13/543 (2%)

Query: 41  LTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           + ++K+C  Q  L    QVH  IIK  +EQ+  ++ + + + +     L  +  VF+ +V
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHV-YIECGRLQEARCVFDALV 90

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
             +   WN ++ GY ++    +   +F  +  E   P+  T+ +++KAC+ + +++ G  
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA +   G++ DV VGT+L+ +YGK   I+ AR++FD +   +++SWT MI  YA  G+
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 218 LVEAKTVFDLMPER----SNVSWNALIGGLVKIGDL----RSARQLFDEMPERNVVSYTT 269
             EA  +   M +     + +++ +++      G L    R  R   D   E +V   T 
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTA 270

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  YAK G +  AR +F+    RDVV+W+ +I  +A++G+  EA  +F  M ++  +PD
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPD 330

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
             + +S+++AC+  G L+    +  +   S +++    V  ALV M +K G++D A  +F
Sbjct: 331 AIMFLSILNACASAGALEWVKKIHRHALDSGLEVD-VRVGTALVHMYSKSGSIDDARVVF 389

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + M  R+VVS+ +MI GL+ HG G+ A+ +F RM + G+ PD V F  VL+ACSH GLV+
Sbjct: 390 DRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G   + AM  VY I P   H  CMVDLLGR G L  A   +++M V+P  + WGALLG+
Sbjct: 450 EGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGS 509

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+ Y ++ELGELVA    +L+P+NA +YVLLSNIYA A +W  V  VR+ M+ERG+RK P
Sbjct: 510 CRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEP 569

Query: 570 GCS 572
           G S
Sbjct: 570 GRS 572



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 31/350 (8%)

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI 178
           E   + +  ++   + D + +  V+K C     +     +H  +I+  ++++  V  +L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER------- 231
            +Y +   +  AR VFD + +++  SW AMI GY       +A  +F  M          
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 232 ------------SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                       S + W   +   ++ G L           E +V   T ++  Y K G 
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGL-----------ESDVRVGTALLRMYGKCGS 179

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR +F+   + D+++W+ +I  YAQ+G   EA ++   M  +  +P+    VS+++A
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA 239

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+  G L     V  +   + ++L    V  ALV M AK G++D A  +F+ M  RDVVS
Sbjct: 240 CASEGALKWVKRVHRHALDAGLELD-VRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS 298

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           +  MI   + HG G +A  LF +M +EG  PD + F  +L AC+  G +E
Sbjct: 299 WNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE 348


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 205/587 (34%), Positives = 325/587 (55%), Gaps = 46/587 (7%)

Query: 32  PKPSCLLSAL-TLIKK---CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P+PS  +SA  T+++K   CK   H+ Q+H+HI++  +    +     +S   S +  LS
Sbjct: 6   PRPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSF-SSSSINLS 64

Query: 88  YSTAVFNRIVN-PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           Y+  +F+ I   P + ++N+LL+  S++         + R+       D+ +FP ++KA 
Sbjct: 65  YALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAV 124

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S V ++ EG  +H    +     D FV T L+D+Y     I+ AR VFDEM +R+VV+W 
Sbjct: 125 SKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWN 184

Query: 207 AMIVGYASVGDLVEAKTVFD------LMPER-------------SNVSWNALIGGLVKIG 247
            MI  Y   G L EA  +F+      +MP+               N+ +N  I   +   
Sbjct: 185 TMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN 244

Query: 248 DLR--------------------SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           D+R                     A + F +M  RN+   T M+ GY+K G +  AR +F
Sbjct: 245 DVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIF 304

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +    +D+V W+ +IS YA++  P EA+++F +MC   ++PD   ++S++SAC  +G LD
Sbjct: 305 DQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLD 364

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
            + WV  Y   + ++ S   +  AL++M AKCG +D A ++FE MP R+VVS+ SMI   
Sbjct: 365 KAKWVHRYTHLNGLE-SVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAF 423

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           ++HG    ++SLF +M  E + P+EV F  VL  CSH GLVE+G + F +M + Y I P 
Sbjct: 424 AMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPK 483

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CMVDL GR   L+ A E++ SMP+ P+   WG+L+ AC+++ ++ELGEL A R+ 
Sbjct: 484 IEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRIL 543

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +LEP + G+ VL+SNIYA   RW  V ++R  M+++ + K  G S +
Sbjct: 544 KLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRI 590


>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 529

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 181/401 (45%), Positives = 264/401 (65%), Gaps = 4/401 (0%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SL+    +  ++  AR +FD+MP R+VVSW +M+ G A  G L  A  +FD MPER+  
Sbjct: 125 NSLLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFDQMPERNAA 184

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR- 293
           SWNA+I GL+  G L  AR++F++MP R+ +S+ TMI GYAK GD+ +A  LFE   ++ 
Sbjct: 185 SWNAVICGLIAHGHLTRAREMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENKN 244

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV--QPDEFILVSLMSACSQVGNLDLSNW 351
           D+ AW+A+I+ YAQNG   EA+ +F+ M   +V   P+E    S+ SACSQ+GNL    W
Sbjct: 245 DLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLW 304

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           V S++    ++L   H+  ALVD+  K G +DRA +LF+ +  RDVVSY +MI G  ++G
Sbjct: 305 VQSFMVSLGIELDD-HLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNG 363

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
              +A+ LF+ M    + P+ V+F  +L+A +H GLVE+    F +M + Y I PS EHY
Sbjct: 364 KLNEAIGLFNEMSDANILPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHY 423

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
             MVDLLGR+G L  A++L+  MP++P AS WGALL +C+L++++ELGE++A++ FE  P
Sbjct: 424 TIMVDLLGRSGKLDEAFQLIMQMPMQPRASVWGALLLSCRLHNNVELGEVIASKCFEQAP 483

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +G Y+LL NIYA+A++W  V  +R  MKER L K+PG S
Sbjct: 484 GESGYYILLGNIYASANKWDKVRRLRKTMKERCLSKMPGSS 524



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 152/369 (41%), Gaps = 83/369 (22%)

Query: 69  HSLVAHFISLCHSL--ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVR 126
           HSL+    SL  SL  +  L  + A+F+++   +   WN+++ G ++  R      +F  
Sbjct: 118 HSLLVSRNSLLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELF-- 175

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
               + +P++         C        G   H  + R                      
Sbjct: 176 ----DQMPERNAASWNAVIC--------GLIAHGHLTR---------------------- 201

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV-SWNALIGGLVK 245
              AR++F++MP R+ +SW  MI GYA  GD+  A  +F+ M  ++++ +WNA+I    +
Sbjct: 202 ---AREMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENKNDLYAWNAMIACYAQ 258

Query: 246 IGDLRSARQLFDEM--------PERNVVS------------------------------- 266
            G  R A  +F+ M        P     S                               
Sbjct: 259 NGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLGIELDD 318

Query: 267 --YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
              T ++D Y K G +  A  LF+    RDVV++SA+I G   NG+ +EA+ +F++M   
Sbjct: 319 HLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFNEMSDA 378

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           N+ P+    V L+SA +  G ++ +    + +S  +           +VD+  + G +D 
Sbjct: 379 NILPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRSGKLDE 438

Query: 385 AAELFETMP 393
           A +L   MP
Sbjct: 439 AFQLIMQMP 447



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 89  STAVFNRIVNPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKA 145
           +  +F R+ N N  + WN ++  Y+QN    E   +F R+++     +P++ TF  V  A
Sbjct: 233 AAGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSA 292

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS + ++R G  + + ++  G++ D  + T+L+DLY K  +I  A  +F  + +R+VVS+
Sbjct: 293 CSQLGNLRFGLWVQSFMVSLGIELDDHLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSY 352

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           +AMIVG    G L EA  +F+ M +     + VS+  L+      G +  AR  F  M  
Sbjct: 353 SAMIVGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLSAYNHAGLVEEARACFTSMSS 412

Query: 262 RNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVA-WSALI 302
           +  +      YT M+D   + G +  A  L    P +   + W AL+
Sbjct: 413 KYKIRPSMEHYTIMVDLLGRSGKLDEAFQLIMQMPMQPRASVWGALL 459


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 210/601 (34%), Positives = 310/601 (51%), Gaps = 91/601 (15%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
            H+ I+K  +  +  L+   +S    L   L  +  VF+ I   NTF +N LL  Y++  
Sbjct: 39  AHARILKSPVAGETFLLNTLVSTYARLGR-LRDARRVFDEIPLRNTFSYNALLSAYARLG 97

Query: 116 RFIEVFTIFVRLIREEAVPD---------------------------------------K 136
           R  E   +F      EA+PD                                        
Sbjct: 98  RPDEARALF------EAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNA 151

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
           Y+F   + AC+     R G  +H  V R    +DV + ++L+D+Y K +    AR+VFD 
Sbjct: 152 YSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDA 211

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSW-------------- 236
           MPERNVVSW ++I  Y   G + EA  +F  M      P+   +S               
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREG 271

Query: 237 --------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                               NAL+    K G    AR +FD MP R++VS T+++ GYAK
Sbjct: 272 RQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAK 331

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
             ++  A+ +F    +++V+AW+ LI+ YAQNG+ +EA+++F  +   ++ P  +   ++
Sbjct: 332 SANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNV 391

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDL-----SRAHVIAALVDMNAKCGNMDRAAELFET 391
           ++AC  + +L L      ++ +          S   V  +LVDM  K G++D  A++FE 
Sbjct: 392 LNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 451

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  RD VS+ +MI G + +G  + A+ LF+RML     PD V    VL+AC H GLV++G
Sbjct: 452 MAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEG 511

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
            R+F +M   + I PS +HY CMVDLLGR GHLK A EL+N MP+EP +  W +LLGAC+
Sbjct: 512 RRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACR 571

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           L+ ++ELGE  A RLFEL+PQN+G YVLLSN+YA   +W +V  VR  MK+RG+ K PGC
Sbjct: 572 LHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGC 631

Query: 572 S 572
           S
Sbjct: 632 S 632



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 191/420 (45%), Gaps = 50/420 (11%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           SAL+     K      QVH  + +     D  + +  + +      P   +  VF+ +  
Sbjct: 156 SALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPED-ARRVFDAMPE 214

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   WN+L+  Y QN    E   +FV ++     PD+ T   V+ AC+ + + REG  +
Sbjct: 215 RNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQV 274

Query: 159 HAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           HA +++   + +D+ +  +L+D+Y K      AR +FD MP R++VS T+++ GYA   +
Sbjct: 275 HAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSAN 334

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVK-------------------------------- 245
           + +A+ VF  M E++ ++WN LI    +                                
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNA 394

Query: 246 ---IGDLRSARQL----------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
              I DL+  +Q           FD  PE +V    +++D Y K G +     +FE    
Sbjct: 395 CGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 454

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           RD V+W+A+I GYAQNG+  +A+ +F  M   N  PD   ++ ++SAC   G +D     
Sbjct: 455 RDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRY 514

Query: 353 DSYLSRSH-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIH 410
              ++  H +  SR H    +VD+  + G++  A EL   MP   D V + S++    +H
Sbjct: 515 FHSMTEDHGITPSRDHYT-CMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLH 573



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 179/370 (48%), Gaps = 46/370 (12%)

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           A HA +++  V  + F+  +L+  Y +   +  AR+VFDE+P RN  S+ A++  YA +G
Sbjct: 38  AAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLG 97

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIG----------------------------- 247
              EA+ +F+ +P+    S+NA++  L + G                             
Sbjct: 98  RPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASA 157

Query: 248 --------DLRSARQ---LFDEMPERNVVS-YTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                   D R+  Q   L    P  + V   + ++D YAK      AR +F+A P+R+V
Sbjct: 158 LSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNV 217

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W++LI+ Y QNG   EA+ +F +M +    PDE  L S+MSAC+ +        V ++
Sbjct: 218 VSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAH 277

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + +         +  ALVDM AKCG    A  +F++MP+R +VS  S++ G +   +   
Sbjct: 278 MVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVED 337

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  +F +M+ + +    +A+ +++ A +  G  E+  R F  ++   +I P+   Y  ++
Sbjct: 338 AQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLFVQLKR-DSIWPTHYTYGNVL 392

Query: 476 DLLGRTGHLK 485
           +  G    L+
Sbjct: 393 NACGNIADLQ 402


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 197/594 (33%), Positives = 315/594 (53%), Gaps = 74/594 (12%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           T    +HSHIIK     +  L+ + IS    L + + Y+  VF+++ +PN + WNT+L  
Sbjct: 26  TKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGS-IPYACKVFDQMPHPNLYSWNTILSA 84

Query: 111 YSQNSRFIEVFTIFVRLIREEAVP---------------------------------DKY 137
           YS+  R  E+  +F  + R + V                                  ++ 
Sbjct: 85  YSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRI 144

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TF  ++   S    V+ G  IH  V+++G    VFVG+ L+D+Y K   ISCARKVFDE+
Sbjct: 145 TFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDEL 204

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
           PE+NVV +  +I+G    G + ++K +F  M ER ++SW ++I G  + G  R A  +F 
Sbjct: 205 PEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFR 264

Query: 258 EMP---------------------------------------ERNVVSYTTMIDGYAKVG 278
           EM                                        + N+   + ++D Y K  
Sbjct: 265 EMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK 324

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++ SA ++F+    ++VV+W+A++ GY QNG  +EAVK FSDM    ++PD+F L S++S
Sbjct: 325 NIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVIS 384

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           +C+ + +L+      +    S + +S   V  ALV +  KCG+++ +  LF  +  +D V
Sbjct: 385 SCANLASLEEGAQFHARALTSGL-ISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEV 443

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ +++ G +  G   + + LF+ ML+ GL PD+V F  VL+ACS  GLVE G + FE+M
Sbjct: 444 TWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESM 503

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
            N + IVP  +HY CM+DL  R G ++ A   +N MP  P A +W  LL +C+ Y ++++
Sbjct: 504 INEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDI 563

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+  A  L EL+P N  SYVLLS++YA   +W +V  +R  M+++GLRK PGCS
Sbjct: 564 GKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCS 617


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 299/538 (55%), Gaps = 36/538 (6%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNR 95
           L  L L  KCK    + Q+ + I K  L   + LV+  + L  ++  P  L Y+  +F  
Sbjct: 6   LHCLALFSKCKSLRTVKQIQALIFKTCL-NSYPLVSGKLLLHCAVTLPDSLHYARRLFLD 64

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVRE 154
           I NP+ F++NTL++G S +        +FV + R+  A+PD ++F  ++KA ++  ++  
Sbjct: 65  IRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTN 124

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H   + +G+D  +FVGT+LI +Y    E +C                         
Sbjct: 125 GLQLHCLAVGYGLDSHLFVGTTLISMYA---ECAC------------------------- 156

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
              LV A+ VFD M E + V+WNA++    +   ++ A Q+F  MP RN+ S+  M+ GY
Sbjct: 157 ---LVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGY 213

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K G++  AR +F   P +D V+WS +I G+A NG  ++A   F ++  + ++P+E  L 
Sbjct: 214 TKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLT 273

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
            ++SAC+Q G  +    +  ++ +S   L    V  AL+D  +KCGN+D A  +F+ M  
Sbjct: 274 GVLSACAQAGAFEFGRILHGFVEKSGF-LQIISVNNALIDTYSKCGNLDMARLVFDNMLR 332

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           R  VS+ +MI G+++HG+G +A+ LF+ M    + PD + F  +L ACSH GLV+ G  +
Sbjct: 333 RSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSY 392

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           F  M N Y I P  EHY CMVDL GR G L+ AY+ +  MP+ P+   W  LLGAC ++ 
Sbjct: 393 FSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHG 452

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++ L   V  +L EL+P+N+G +VLLSNIYA A +W DV  +R  M  + L+K PG S
Sbjct: 453 NLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWS 510


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/544 (35%), Positives = 309/544 (56%), Gaps = 16/544 (2%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS-LCHSLATPLSYSTAVFNRIV 97
           S L    KC    HL Q  S +I  GL   H+    F+S +  S    L Y+  +F+R+ 
Sbjct: 10  SILCCFHKCGTFDHLKQTTSILITSGLAH-HTF---FLSDILRSATKDLGYTLLLFDRLA 65

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P  FLWNT+++G+S +S+   V   + RL     +PD++TFPL++KA S  L       
Sbjct: 66  TPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSK-LRNENPFQ 124

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
            +A ++++G+D D FV  SL+  +     + C+R++F E  +++VVSWTA+I G    G 
Sbjct: 125 FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGR 184

Query: 218 LVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----T 268
            VEA   F  M     E   V+  +++     + D+   R +     E   V +     +
Sbjct: 185 AVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++D Y+K G    A  +F   P R++V+W ALI+GY Q  +  EA+K+F +M  + ++P
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           ++  + S ++AC+Q+G+LD   W+  Y+ RS + L+ + +  ALVDM +KCG +D A  +
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLN-SKLGTALVDMYSKCGCVDEALLV 363

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE +P +DV  + +MI GL++ G    +++LF +M+   + P+ V F  VL+AC+H GLV
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++G   F  M   Y + P+ +HY CMVDLLGR G L+ A + + SMP+EP    WGAL  
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            C ++   ELGE + N L +L+P ++G Y+LL+N+Y+   +W     VR  MK +G+ K 
Sbjct: 484 GCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKS 543

Query: 569 PGCS 572
           PGCS
Sbjct: 544 PGCS 547


>gi|297803844|ref|XP_002869806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315642|gb|EFH46065.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 852

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 317/571 (55%), Gaps = 53/571 (9%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN---RIVNP 99
            +++C +     QVH+ ++         ++ H      +L     +S  V N   RI++ 
Sbjct: 267 FLERCVVIQQAKQVHAQLVVNRYNHLEPILVH-----QTLHFTKEFSRNVVNYVKRILHG 321

Query: 100 -------NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
                  ++F W  L++  SQ+ +F E   +++ +      P  +    V++AC  +  +
Sbjct: 322 FKSSKGMDSFSWGCLVRFLSQHRKFKETVGVYIEMHYSGIPPSSHAITSVLRACGKMEDM 381

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
            +G  IHA  ++ G+   V+V T L+ LY +   I  A+KVFD++ E+N VSW +++ GY
Sbjct: 382 VDGKPIHAQALKNGLCGCVYVQTGLVGLYSRFGYIEMAKKVFDDIAEKNTVSWNSLLHGY 441

Query: 213 ASVGDLVEAKTVFDLMPER-------------------------------SNVSWNALIG 241
              G+L EA+ VFD +PE+                               S+ +WN LIG
Sbjct: 442 LESGNLDEARRVFDKIPEKDVVSWNLIISSYAKKGDMSNACSLFLTMPLKSSATWNILIG 501

Query: 242 GLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
           G V   +++ AR  FD MP++N VS+ TMI GY K+GD+ SA  LF     +D + + A+
Sbjct: 502 GYVNCREMKLARTYFDTMPQKNSVSWITMISGYTKLGDVQSAEKLFRQMSRKDKLVYDAM 561

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           I+ YAQNG+P +A+K+FS M   N  +QPDE  L S++SA SQ+G+     WV+SY++  
Sbjct: 562 IACYAQNGKPKDALKLFSQMLESNSDIQPDEITLSSVVSASSQLGDTSFGTWVESYITEH 621

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + +    +  +L+D+  K G+  +A +LF  +  +D VSY +MI G  I+G   +A  L
Sbjct: 622 GIKIDDL-LSTSLIDLYMKGGDFAKAFKLFNDLIKKDTVSYSAMIMGCGINGMATEANCL 680

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F  M+ + + P+ V FT +L+A SH GLV++G++ F +M++ + + PS +HY  MVD+LG
Sbjct: 681 FREMIEKKIPPNLVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDMLG 739

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G L+ AYEL+ SMP++P+A  WGALL A  L++++E GE+  +   +LE    G    
Sbjct: 740 RAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSH 799

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           L+NIY +  RW D   VR  M+E   +K+PG
Sbjct: 800 LANIYTSVGRWDDARNVRDSMEE---KKLPG 827


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/549 (36%), Positives = 311/549 (56%), Gaps = 49/549 (8%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNT 101
           L +KC     L  +H+ II  GL  +   +   IS C    A  L Y+  +F++I  PN 
Sbjct: 120 LCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNK 179

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           F++N+L++GYS +   I+   +F R+I     P+++T P V+KAC    +  E   +H  
Sbjct: 180 FMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGL 239

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM--IVG-------- 211
            I+ G+   VFV  +LI +Y     I CARK+FD++ ++ +VSW +M  I G        
Sbjct: 240 AIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVR 299

Query: 212 ------YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
                 YA  G+L  A+ +FD   E++ VSW ++I    + G +  ARQ+FD+MP +NVV
Sbjct: 300 NALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVV 359

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+ +MI                               S Y + GQ  EA+ +F+ M +  
Sbjct: 360 SWNSMI-------------------------------SCYLREGQYREALDLFNKMRNSR 388

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V PDE  LVS+++ACSQ+G+L +   + +Y+  S+       +  +L+DM AKCG +  A
Sbjct: 389 VVPDEATLVSILAACSQLGDLVMGKKIHNYI-LSNKGAYGVTLYNSLIDMYAKCGPVVTA 447

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            ++F  MP +++VS+  +I  L++HG G +A+ LF+ M ++G  PDE+  T +L+ACSH 
Sbjct: 448 LDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHS 507

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV+ G  +F+ M  +Y +    EHYACMVDLLGR G L  A EL+  MP++P    WGA
Sbjct: 508 GLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGA 567

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+++ ++E+G+ +  +L ELEP + G YVL+SNIY  A RW DV  +R  M +RG+
Sbjct: 568 LLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGI 627

Query: 566 RKIPGCSSL 574
           +K    SS+
Sbjct: 628 KKGRAISSI 636


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/486 (37%), Positives = 279/486 (57%), Gaps = 44/486 (9%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +FN     +   WN L+ GY Q  +  E   +F R+   +                 
Sbjct: 181 ARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRD----------------- 223

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
                        V+ W +         ++  Y +R ++  AR++FD  P R+V +WTA+
Sbjct: 224 -------------VVSWNI---------MVSGYARRGDMVEARRLFDAAPVRDVFTWTAV 261

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           + GYA  G L EA+ VFD MPER+ VSWNA++   ++   +  A++LF+ MP RNV S+ 
Sbjct: 262 VSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWN 321

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNV 326
           TM+ GYA+ G +  A+++F+  P +D V+W+A+++ Y+Q G  +E +++F +M  C + V
Sbjct: 322 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 381

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
               F  V  +S C+ +  L+    +   L R+   +    V  AL+ M  KCGNM+ A 
Sbjct: 382 NRSAFACV--LSTCADIAALECGMQLHGRLIRAGYGVG-CFVGNALLAMYFKCGNMEDAR 438

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
             FE M  RDVVS+ +MI G + HG G++A+ +FD M +    PD++    VL ACSH G
Sbjct: 439 NAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 498

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LVE G  +F +M + + +   PEHY CM+DLLGR G L  A++L+  MP EP ++ WGAL
Sbjct: 499 LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 558

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGA +++ + ELG   A ++FELEP+NAG YVLLSNIYA++ +W D   +R  M+ERG++
Sbjct: 559 LGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 618

Query: 567 KIPGCS 572
           K+PG S
Sbjct: 619 KVPGFS 624



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 27/378 (7%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            H  A  ++ +  +F  +   +T  +N +L GYS N R     ++F  + R    PD Y+
Sbjct: 47  AHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDNYS 102

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  ++    H L+V    A    +       D      +I  +     +S AR  FD  P
Sbjct: 103 YNTLL----HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           E++ VSW  M+  Y   G + EA+ +F+   E   +SWNAL+ G V+ G +  AR+LFD 
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP R+VVS+  M+ GYA+ GDM  AR LF+AAP RDV  W+A++SGYAQNG  +EA ++F
Sbjct: 219 MPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF 278

Query: 319 SDM-----CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
             M      S N     +I   +M    ++ N+     V S+ +              ++
Sbjct: 279 DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT--------------ML 324

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
              A+ G ++ A  +F+TMP +D VS+ +M+   S  G   + + LF  M   G   +  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 434 AFTIVLTACSHVGLVEDG 451
           AF  VL+ C+ +  +E G
Sbjct: 385 AFACVLSTCADIAALECG 402



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 54/367 (14%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           ++ +V      I  + +   ++ A ++F  MP R+  ++ AM+ GY++ G L  A ++F 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            +P   N S+N L+  L     L  AR LFDEMP R+ V+Y  MI  +A  G ++ AR  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+ AP++D V+W+ +++ Y +NG+ +EA  +F+                           
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT----------------------EW 191

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           D+ +W                   AL+    + G M  A ELF+ MP RDVVS+  M+ G
Sbjct: 192 DVISW------------------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSG 233

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            +  G   +A  LFD         D   +T V++  +  G++E+  R F+AM    A+  
Sbjct: 234 YARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-- 287

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
               +  MV    +   +  A EL N MP    AS W  +L        +E  + V    
Sbjct: 288 ---SWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLEEAKAV---- 339

Query: 527 FELEPQN 533
           F+  PQ 
Sbjct: 340 FDTMPQK 346



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 30/300 (10%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  + AVF+ +   +   W  +L  YSQ     E   +F+ + R     ++  F
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             V+  C+ + ++  G  +H  +IR G     FVG +L+ +Y K   +  AR  F+EM E
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL 255
           R+VVSW  MI GYA  G   EA  +FD+M   S    +++   ++      G +      
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 256 FDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNG 309
           F  M     V+     YT MID   + G +  A  L +  P + D   W AL+     + 
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 566

Query: 310 QPD----EAVKIFSDMCSKNVQPDE---FILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            P+     A KIF       ++P+    ++L+S + A S         W D+   R  M+
Sbjct: 567 NPELGRSAAEKIF------ELEPENAGMYVLLSNIYASS-------GKWRDARKMRVMME 613


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 320/561 (57%), Gaps = 45/561 (8%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
             L Q+ + II K L    SL   FI    + A+ + Y+  VF++I +P+  +  + +  
Sbjct: 16  NQLKQIQALIIIKYL----SLTPLFIRRLLN-ASFIQYARQVFDQIPHPDQGVHCSFITA 70

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           YS+ S   E    FV + +       +T P + K+C+ +L++  G  +H+ VIR+G    
Sbjct: 71  YSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSS 130

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           VF   +LI+ Y K  ++  A  +FD +  ++ +++  +I  Y+  G+++ A+ +FD M +
Sbjct: 131 VFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRD 190

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLF----DEMPE------------------------- 261
           RS VSWNA+I    + GD      +F    DEM E                         
Sbjct: 191 RSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRI 250

Query: 262 ----------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
                      N++  T M++ Y K G +   R +F+    RDVV WSA+I+GYAQNG+ 
Sbjct: 251 KKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRS 310

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           +EA+++F +M S  ++P++  LVS++SAC+Q+G+++    + SY+    + +S  +V +A
Sbjct: 311 NEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGL-ISNVYVASA 369

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+ M +KCGN+ +A ++F+ +P RD V++ SMI GL+I+G    A++L++RM    + P+
Sbjct: 370 LLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPN 429

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + F  ++TAC+H G VE G  FF +M++ + I P+ EH+AC+VDL  R+G L  AYE +
Sbjct: 430 NITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFI 489

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             M VEP+   WG LL A +++ ++EL EL   +L ELEP N+G+YV+LSNIYA+A RW 
Sbjct: 490 CRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQ 549

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           +   VR  MK++ ++K    S
Sbjct: 550 EALKVRKLMKDKRVQKAAAYS 570


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 285/489 (58%), Gaps = 13/489 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S +   F+     +   WN +L  Y +N R  E   +F      +A+    ++  ++  
Sbjct: 216 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAI----SWNALMAG 271

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
                 + E   +   + +     DV    +++  Y +R +++ AR++FD  P R+V +W
Sbjct: 272 YVQRSQIEEAQKMFNKMPQ----RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTW 327

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           TA++ GYA  G L EAK VFD MP+++ VSWNA++   V+   +  A++LFD MP RNV 
Sbjct: 328 TAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA 387

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CS 323
           S+ TM+ GYA+ G +  AR++F   P +D V+W+A+++ Y+Q G  +E +++F +M  C 
Sbjct: 388 SWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCG 447

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V    F  V  +S C+ +  L+    + S L ++   +    V  AL+ M  KCG+M+
Sbjct: 448 EWVNRSAFACV--LSTCADIAALECGMQLHSRLIKAGYGVG-CFVGNALLAMYFKCGSME 504

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A   FE M  RDVVS+ +MI G + HG G++A+ +FD M      PD++    VL ACS
Sbjct: 505 EAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACS 564

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLVE G  +F +M   + +   PEHY CM+DLLGR G L  A  L+  MP EP ++ W
Sbjct: 565 HSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMW 624

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GALLGA +++ + ELG   A ++FELEP+NAG YVLLSNIYA++ +W DV  +R  M ER
Sbjct: 625 GALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHER 684

Query: 564 GLRKIPGCS 572
           G++K+PG S
Sbjct: 685 GVKKVPGFS 693



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 186/379 (49%), Gaps = 29/379 (7%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            H  A  +  +  +F  +   +T  +NT+L GY+ N R  +  + F  + R    PD ++
Sbjct: 116 AHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFS 171

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  ++    H L V    A   A+      +D      +I  +     +S AR  FD  P
Sbjct: 172 YNTLL----HALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAP 227

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           E++ VSW  M+  Y   G + EA+ +FD   E   +SWNAL+ G V+   +  A+++F++
Sbjct: 228 EKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNK 287

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP+R+VVS+ TM+ GYA+ GDM  AR LF+ AP RDV  W+A++SGYAQNG  +EA ++F
Sbjct: 288 MPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVF 347

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN-- 376
             M  KN        VS         N  ++ +V   +     +L  A     +   N  
Sbjct: 348 DAMPDKNA-------VSW--------NAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTM 392

Query: 377 ----AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
               A+ G +D A  +F  MP +D VS+ +M+   S  G   + + LF  M   G   + 
Sbjct: 393 LTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNR 452

Query: 433 VAFTIVLTACSHVGLVEDG 451
            AF  VL+ C+ +  +E G
Sbjct: 453 SAFACVLSTCADIAALECG 471



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 182/384 (47%), Gaps = 34/384 (8%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           ++A +   S R   A   A I    D +V      I  + +   +  A ++F  MP R+ 
Sbjct: 79  LRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRST 138

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
            ++  M+ GYA+ G L +A + F  +P   + S+N L+  L     L   R LFDEMP +
Sbjct: 139 STYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVK 198

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           + VSY  MI  +A  G ++ AR  F+ AP++D V+W+ +++ Y +NG+  EA ++F    
Sbjct: 199 DSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF---- 254

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCG 380
               + D     +LM+   Q   ++ +        +    + +  V++   +V   A+ G
Sbjct: 255 DSRTEWDAISWNALMAGYVQRSQIEEAQ-------KMFNKMPQRDVVSWNTMVSGYARRG 307

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIV 438
           +M  A  LF+  P RDV ++ +++ G + +G   +A  +FD M      PD+  V++  +
Sbjct: 308 DMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDKNAVSWNAM 361

Query: 439 LTACSHVGLVEDGWRFFEAM--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
           + A     ++E+    F+AM  +NV +       +  M+    + G L  A  +   MP 
Sbjct: 362 MAAYVQRRMMEEAKELFDAMPCRNVAS-------WNTMLTGYAQAGMLDEARAIFGMMP- 413

Query: 497 EPHASAWGALLGACKLYSDIELGE 520
           +  A +W A+L A   YS I   E
Sbjct: 414 QKDAVSWAAMLAA---YSQIGFSE 434



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 10/234 (4%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  + A+F  +   +   W  +L  YSQ     E   +F  + R     ++  F
Sbjct: 396 YAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAF 455

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             V+  C+ + ++  G  +H+ +I+ G     FVG +L+ +Y K   +  A   F+EM E
Sbjct: 456 ACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEE 515

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL 255
           R+VVSW  MI GYA  G   EA  VFD M + S    +++   ++      G +      
Sbjct: 516 RDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISY 575

Query: 256 FDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
           F  M     V+     YT MID   + G +  A +L +  P + D   W AL+ 
Sbjct: 576 FYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLG 629


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/539 (35%), Positives = 304/539 (56%), Gaps = 18/539 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD--HSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           + LIK+C     L  +H+ I+K  L      SL+A + SL       +S++ A+F+   +
Sbjct: 8   IALIKQCVTLEALKSLHASILKSHLHPHLCTSLIAQYASL-----GSISHAYALFSTSHS 62

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N FLWN +++ +S          ++ R+++       +TFP ++KAC  +     G   
Sbjct: 63  SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARA 122

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA V+ +G + DVFV  SL+ +YG+      +R+VF+ MPERNVVSW++M+  YA  G  
Sbjct: 123 HAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRY 182

Query: 219 VEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSA----RQLFDEMPERNVVSYTTMIDG 273
            E   +F  ++ E    +  +++  +  I     A    R + D   + +       +  
Sbjct: 183 EEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGM 242

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YA+ G +  AR  F    D+D+VAW+++I  Y Q   P  A+++F  M    + PD   L
Sbjct: 243 YARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTL 302

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFET 391
           +SL+ A S + +  L+ +V   ++RS     + H+    A++D+  KCGN++ A + F+ 
Sbjct: 303 LSLIHAVSNLASFQLARFVHGVITRSFF---KNHIALDTAVIDLYVKCGNLEYARKCFDR 359

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  R+++S+ +MI G  +HGHGR+A+ LFD+M +  + PD +AF +VL+ACSH GL+ +G
Sbjct: 360 MSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEG 418

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
           W  F+AM   + + P  EHYACMVDLLGR G L  A   +  MP+ P A  WGALLGAC+
Sbjct: 419 WECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACR 478

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           ++S++E  E  A  LF L+ +N G Y+LLSNIYA++ +  +   +R+ MK RG+RK  G
Sbjct: 479 IHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVG 537


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 200/578 (34%), Positives = 319/578 (55%), Gaps = 52/578 (8%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV----- 97
           L+  CK    ++++H+ +I  G+ ++ +L    +    + A+      A F R V     
Sbjct: 2   LLGSCKTADDVNKIHARLITTGVIKNSNLTTRIVL---AFASSRRQYLAEFARCVFEEHH 58

Query: 98  --------NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
                     + FLWN ++K +S  +       +F  ++      DK++  LV+KACS +
Sbjct: 59  VYSLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRL 118

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             V+ G  IH  + + G+  D+F+   LI LY K   +  +R+VFD MP+R+ VS+ +MI
Sbjct: 119 GFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMI 178

Query: 210 VGYASVGDLVEAKTVFDLMP----------------------------------ERSNVS 235
            GY   G +  A+ +FDLMP                                  E+  +S
Sbjct: 179 DGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLIS 238

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           WN++I G VK G +  A+ LFD MP R+V+++ TMIDGYAK+G +  A++LF+  P RDV
Sbjct: 239 WNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDV 298

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VA++++++GY QN    EA+++F  M  + ++ PDE  LV ++SA +Q+G L  +  +  
Sbjct: 299 VAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHF 358

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ +    +    +  AL+DM +KCG++  A  +F+ + N+++  + ++I GL+IHG G 
Sbjct: 359 YIVKKQFFIG-GKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGG 417

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            A  +  ++    + PD++ F  VL ACSH GLV++G   FE M+  + I P  +HY CM
Sbjct: 418 PAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 477

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E+GELVA  L      N 
Sbjct: 478 VDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNP 537

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            SYVLLSN+YA+   W DV  VR+ MKER ++KIPGCS
Sbjct: 538 SSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCS 575


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 309/564 (54%), Gaps = 46/564 (8%)

Query: 54  HQVHSHIIKKGLEQDHSL----VAHFISLCHSLATPLS------YSTAVFNRIVNPNTFL 103
           +++H+ +I  GL ++ +L    V  F++   S     +      Y    F+     + +L
Sbjct: 9   NKMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDPYL 68

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++K YS          +F  +I      DK++  LV+KACS +  ++EG  IH  + 
Sbjct: 69  WNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGFLR 128

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER----------------------- 200
           + G+  D+F+   LI LY K   +  AR+VFD MP+R                       
Sbjct: 129 KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHK 188

Query: 201 ----------NVVSWTAMIVGYASVGD-LVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
                     N++SW +MI GYA   D L  A  +F  MPE+  +SWN++I G VK G +
Sbjct: 189 LFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRI 248

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             A+ LFD MP R+VV++ TMIDGYAK+G +  A+SLF+    RDVVA +++++GY QN 
Sbjct: 249 EDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNK 308

Query: 310 QPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
              EA++IF+DM    ++ PDE  LV ++SA +Q+G L  +  +  Y+      L    +
Sbjct: 309 YHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLG-GKL 367

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             AL+DM++KCG++  A  +FE + N+ +  + +MI GL+IHG G  A  +  ++    +
Sbjct: 368 GVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSI 427

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD + F  VL ACSH GLV++G   FE M+  + I P  +HY C+VD+L R+G ++ A 
Sbjct: 428 QPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAK 487

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
            L+  MP+EP+   W + L AC  + + E GELVA  L      N  SYVLLSN+YA+  
Sbjct: 488 HLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYASLG 547

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
            W DV  VR  MK+R L KIPGCS
Sbjct: 548 MWKDVRRVRMMMKQRKLHKIPGCS 571


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/483 (37%), Positives = 279/483 (57%), Gaps = 37/483 (7%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN +L  Y +N R  E   +F      +A+                       A+ +  +
Sbjct: 165 WNGMLAAYVRNGRVEEARGLFNSRTEWDAI--------------------SWNALMSGYV 204

Query: 164 RWGV------------DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +WG               DV     ++  Y +R ++  AR++FD  P R+V +WTA++ G
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           YA  G L EA+ VFD MPER+ VSWNA++   ++   +  A++LF+ MP RNV S+ TM+
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNVQPD 329
            GYA+ G +  A+++F+  P +D V+W+A+++ Y+Q G  +E +++F +M  C + V   
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
            F  V  +S C+ +  L+    +   L R+   +    V  AL+ M  KCGNM+ A   F
Sbjct: 385 AFACV--LSTCADIAALECGMQLHGRLIRAGYGVG-CFVGNALLAMYFKCGNMEDARNAF 441

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E M  RDVVS+ +MI G + HG G++A+ +FD M +    PD++    VL ACSH GLVE
Sbjct: 442 EEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVE 501

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G  +F +M + + +   PEHY CM+DLLGR G L  A++L+  MP EP ++ WGALLGA
Sbjct: 502 KGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGA 561

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
            +++ + ELG   A ++FELEP+NAG YVLLSNIYA++ +W D   +R  M+ERG++K+P
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVP 621

Query: 570 GCS 572
           G S
Sbjct: 622 GFS 624



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 27/378 (7%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            H  A  ++ +  +F  +   +T  +N +L GYS N R     ++F  + R    PD Y+
Sbjct: 47  AHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDNYS 102

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  ++    H L+V    A    +       D      +I  +     +S AR  FD  P
Sbjct: 103 YNTLL----HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           E++ VSW  M+  Y   G + EA+ +F+   E   +SWNAL+ G V+ G +  AR+LFD 
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDR 218

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP R+VVS+  M+ GYA+ GDM  AR LF+AAP RDV  W+A++SGYAQNG  +EA ++F
Sbjct: 219 MPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF 278

Query: 319 SDM-----CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
             M      S N     +I   +M    ++ N+     V S+ +              ++
Sbjct: 279 DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT--------------ML 324

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
              A+ G ++ A  +F+TMP +D VS+ +M+   S  G   + + LF  M   G   +  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 434 AFTIVLTACSHVGLVEDG 451
           AF  VL+ C+ +  +E G
Sbjct: 385 AFACVLSTCADIAALECG 402



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 165/367 (44%), Gaps = 54/367 (14%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           ++ +V      I  + +   ++ A ++F  MP R+  ++ AM+ GY++ G L  A ++F 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            +P   N S+N L+  L     L  AR LFDEMP R+ V+Y  MI  +A  G ++ AR  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+ AP++D V+W+ +++ Y +NG+ +EA  +F    +   + D     +LMS   Q    
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDAISWNALMSGYVQ---- 205

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
               W                            G M  A ELF+ MP RDVVS+  M+ G
Sbjct: 206 ----W----------------------------GKMSEARELFDRMPGRDVVSWNIMVSG 233

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            +  G   +A  LFD         D   +T V++  +  G++E+  R F+AM    A+  
Sbjct: 234 YARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-- 287

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
               +  MV    +   +  A EL N MP    AS W  +L        +E  + V    
Sbjct: 288 ---SWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLEEAKAV---- 339

Query: 527 FELEPQN 533
           F+  PQ 
Sbjct: 340 FDTMPQK 346



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 30/300 (10%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  + AVF+ +   +   W  +L  YSQ     E   +F+ + R     ++  F
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             V+  C+ + ++  G  +H  +IR G     FVG +L+ +Y K   +  AR  F+EM E
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL 255
           R+VVSW  MI GYA  G   EA  +FD+M   S    +++   ++      G +      
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 256 FDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNG 309
           F  M     V+     YT MID   + G +  A  L +  P + D   W AL+     + 
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 566

Query: 310 QPD----EAVKIFSDMCSKNVQPDE---FILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            P+     A KIF       ++P+    ++L+S + A S         W D+   R  M+
Sbjct: 567 NPELGRSAAEKIF------ELEPENAGMYVLLSNIYASS-------GKWRDARKMRVMME 613


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 312/563 (55%), Gaps = 88/563 (15%)

Query: 58  SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +H++K G ++DH  V + I   ++   P+ ++  +F+ + +     WN ++ GY +    
Sbjct: 51  AHVLKSGYDRDH-YVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNE 109

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            E  T+F                       HV+  +E   I   VI W         T++
Sbjct: 110 EEASTLF-----------------------HVMGDQE---ISRNVITW---------TTM 134

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV--- 234
           I  + K+  +  AR  FD+MPER+VVSW AM+ GYA  G   E   +F+ M    NV   
Sbjct: 135 ITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPD 194

Query: 235 --SW------------------------------------NALIGGLVKIGDLRSARQLF 256
             +W                                     AL+    K G+L +A ++F
Sbjct: 195 ETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIF 254

Query: 257 DEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           +++     R+ V +  MI  YA+VGD+ SA+ LF+  P RD V+W+++I+GY QNG+  +
Sbjct: 255 EQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFK 314

Query: 314 AVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           A+K+F +M S   + +PDE  +VS+ SAC  +G L L NW  S L  +H+ +S + V  +
Sbjct: 315 AIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISIS-VYNS 373

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L++M ++CG+M  A  +F+ M  RD+VSY ++I G + HGHG +++ L  +M  +G+ PD
Sbjct: 374 LINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 433

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + +  +LTACSH GL+++G R FE+++      P  +HYACM+D+LGR G L+ A +L+
Sbjct: 434 RITYIAILTACSHAGLLDEGQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLI 488

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMP+EPHA  +G+LL A  ++  +ELGEL A +LF++EP N+G+Y LLSNIYA+A RW 
Sbjct: 489 QSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWK 548

Query: 552 DVCLVRSKMKERGLRKIPGCSSL 574
           +   VR  M+++G++K  G S L
Sbjct: 549 EGDKVRDTMRKQGVKKTTGLSWL 571


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 173/447 (38%), Positives = 272/447 (60%), Gaps = 33/447 (7%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           +++ +  P  +TF  ++KACS V  +  G A+H  + ++G D  VFV T+L+D YG    
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYG---- 56

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
                                      + G +VEA+ VFD M ER   +W  +I    + 
Sbjct: 57  ---------------------------NAGKIVEARRVFDEMSERDVFAWTTMISVHART 89

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ SARQLFDEMP RN  S+  MIDGY+++ ++ SA  LF   P+RD+++W+ +I+ Y+
Sbjct: 90  GDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYS 149

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           QN Q  EA+ +F++M +  + PDE  + +++SAC+ +G LDL   +  Y      DL   
Sbjct: 150 QNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLD-V 208

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
           ++ +AL+DM AKCG++D++  +F  +  +++  + S+I+GL++HG+  +A+++F RM  E
Sbjct: 209 YIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQRE 268

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
            + P+ V F  VL AC+H GLVE+G + F +M   ++I P  EHY CMVDLLG+ G L+ 
Sbjct: 269 KIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLED 328

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A EL+ SM +EP++  WGALLG CKL+ ++++ ++  N    LEP N+G Y LL N+YA 
Sbjct: 329 ALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAE 388

Query: 547 ADRWLDVCLVRSKMKERGLRKI-PGCS 572
            +RW +V  +R+ MKE G+ K  PG S
Sbjct: 389 VNRWSEVANIRATMKELGVEKTSPGSS 415



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 14/225 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++ N +   W T++  YSQN +F E   +F  +      PD+ T   +I AC+H+ +
Sbjct: 129 LFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGA 188

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  IH   +  G D DV++G++LID+Y K   +  +  VF ++ ++N+  W ++I G
Sbjct: 189 LDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEG 248

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEM-------P 260
            A  G   EA  +F  M       + V++ +++G     G +   R+ F  M       P
Sbjct: 249 LAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPP 308

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG 304
           E  +  Y  M+D   K G +  A  L  +   + + V W AL+ G
Sbjct: 309 E--IEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H + ++ G + D  + +  I + ++    L  S  VF ++   N F WN++++G + +
Sbjct: 194 EIHLYAMEMGFDLDVYIGSALIDM-YAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVH 252

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFV 173
               E   +F R+ RE+  P+  TF  V+ AC+H   V EG     ++ R + +  ++  
Sbjct: 253 GYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEH 312

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVG 211
              ++DL GK   +  A ++   M  E N V W A++ G
Sbjct: 313 YGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 182/486 (37%), Positives = 279/486 (57%), Gaps = 44/486 (9%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +FN     +   WN L+ GY Q  +  E   +F R+   +                 
Sbjct: 181 ARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRD----------------- 223

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
                        V+ W +         ++  Y +R ++  AR++FD  P R+V +WTA+
Sbjct: 224 -------------VVSWNI---------MVSGYARRGDMVEARRLFDAAPVRDVFTWTAV 261

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           + GYA  G L EA+ VFD MPER+ VSWNA++   ++   +  A++LF+ MP RNV S+ 
Sbjct: 262 VSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWN 321

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNV 326
           TM+ GYA+ G +  A+++F+  P +D V+W+A+++ Y+Q G  +E +++F +M  C + V
Sbjct: 322 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 381

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
               F  V  +S C+ +  L+    +   L R+   +    V  AL+ M  KCGNM+ A 
Sbjct: 382 NRSAFACV--LSTCADIAALECGMQLHGRLIRAGYGVG-CFVGNALLAMYFKCGNMEDAR 438

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
             FE M  RDVVS+ +MI G + HG G++A+ +FD M +    PD++    VL ACSH G
Sbjct: 439 NAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 498

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LVE G  +F +M + + +   PEHY CM+DLLGR G L  A++L+  MP EP ++ WGAL
Sbjct: 499 LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 558

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGA +++ + ELG   A ++FELEP+NAG YVLLSNIYA++ +W D   +R  M+ERG++
Sbjct: 559 LGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 618

Query: 567 KIPGCS 572
           K+PG S
Sbjct: 619 KVPGFS 624



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 27/378 (7%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            H  A  ++ +  +F  +   +T  +N +L GYS N R     ++F  + R    PD Y+
Sbjct: 47  AHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR----PDNYS 102

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  ++    H L+V    A    +       D      +I  +     +S AR  FD  P
Sbjct: 103 YNTLL----HALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           E++ VSW  M+  Y   G + EA+ +F+   E   +SWNAL+ G V+ G +  AR+LFD 
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP R+VVS+  M+ GYA+ GDM  AR LF+AAP RDV  W+A++SGYAQNG  +EA ++F
Sbjct: 219 MPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF 278

Query: 319 SDM-----CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
             M      S N     +I   +M    ++ N+     V S+ +              ++
Sbjct: 279 DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT--------------ML 324

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
              A+ G ++ A  +F+TMP +D VS+ +M+   S  G   + + LF  M   G   +  
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRS 384

Query: 434 AFTIVLTACSHVGLVEDG 451
           AF  VL+ C+ +  +E G
Sbjct: 385 AFACVLSTCADIAALECG 402



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 54/367 (14%)

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           ++ +V      I  + +   ++ A ++F  MP R+  ++ AM+ GY++ G L  A ++F 
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            +P   N S+N L+  L     L  AR LFDEMP R+ V+Y  MI  +A  G ++ AR  
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHY 153

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+ AP++D V+W+ +++ Y +NG+ +EA  +F+                           
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT----------------------EW 191

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           D+ +W                   AL+    + G M  A ELF+ MP RDVVS+  M+ G
Sbjct: 192 DVISW------------------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSG 233

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            +  G   +A  LFD         D   +T V++  +  G++E+  R F+AM    A+  
Sbjct: 234 YARRGDMVEARRLFD----AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV-- 287

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
               +  MV    +   +  A EL N MP    AS W  +L        +E  + V    
Sbjct: 288 ---SWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLEEAKAV---- 339

Query: 527 FELEPQN 533
           F+  PQ 
Sbjct: 340 FDTMPQK 346



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 131/300 (43%), Gaps = 30/300 (10%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  + AVF+ +   +   W  +L  YSQ     E   +F+ + R     ++  F
Sbjct: 327 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 386

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             V+  C+ + ++  G  +H  +IR G     FVG +L+ +Y K   +  AR  F+EM E
Sbjct: 387 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 446

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL 255
           R+VVSW  MI GYA  G   EA  +FD+M   S    +++   ++      G +      
Sbjct: 447 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 506

Query: 256 FDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNG 309
           F  M     V+     YT MID   + G +  A  L +  P + D   W AL+     + 
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 566

Query: 310 QPD----EAVKIFSDMCSKNVQPDE---FILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            P+     A KIF       ++P+    ++L+S + A S         W D+   R  M+
Sbjct: 567 NPELGRSAAEKIF------ELEPENAGMYVLLSNIYASS-------GKWRDARKMRVMME 613


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 310/541 (57%), Gaps = 13/541 (2%)

Query: 43  LIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+K C   + L    ++H  +I  G   +   +   +++ ++    ++ +  +F+R+   
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNM-YAKCRQINDAYNMFDRMPER 94

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           +   WNT++ GY+QN        + +R+  E   PD  T   ++ A +    +R G A+H
Sbjct: 95  DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH 154

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V+R G +  V V T+L+D+Y K   +S AR +FD M  R VVSW +MI GY   GD  
Sbjct: 155 GYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAE 214

Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR---QLFDEMP-ERNVVSYTTMI 271
            A  +F  M +     +NV+    +     +GDL   +   +L D++  + +V    ++I
Sbjct: 215 GAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLI 274

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             Y+K   +  A  +F+   ++ +V+W+A+I GYAQNG  +EA+  F +M S+N++PD F
Sbjct: 275 SMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSF 334

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            +VS++ A +++     + W+   + R  +D     V+ ALVDM AKCG +  A +LF+ 
Sbjct: 335 TMVSVIPALAELSIPRQAKWIHGLVIRRFLD-KNVFVMTALVDMYAKCGAIHTARKLFDM 393

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  R V+++ +MI G   HG G+ +V LF  M    + P+++ F   L+ACSH GLVE+G
Sbjct: 394 MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
             FFE+M+  Y I P+ +HY  MVDLLGR G L  A++ +  MP++P  + +GA+LGACK
Sbjct: 454 LCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACK 513

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           ++ +++LGE  A  +F+L P + G +VLL+NIYATA  W  V  VR+ M++ GL+K PGC
Sbjct: 514 IHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGC 573

Query: 572 S 572
           S
Sbjct: 574 S 574



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 207/417 (49%), Gaps = 27/417 (6%)

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +LKGY+++S      + F R+  +   P  Y F  ++K C     ++ G  IH +VI  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG-DLVEAKTVF 225
              ++F  T ++++Y K ++I+ A  +FD MPER++V W  MI GYA  G   V    V 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSAR-------QLFDEMPERNVVSYTTMIDGYAKVG 278
            +  E        ++  L  + D R  R        +     E  V   T ++D Y+K G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            ++ AR +F+    R VV+W+++I GY Q+G  + A+ IF  M  + VQP    ++  + 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+ +G+L+   +V   + +  +D S   V+ +L+ M +KC  +D AA++F+ + N+ +V
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLD-SDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG-W----- 452
           S+ +MI G + +G   +A++ F  M S  + PD      V+ A + + +     W     
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 453 --RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
             RF +  +NV+ +         +VD+  + G + +A +L + M    H   W A++
Sbjct: 360 IRRFLD--KNVFVMTA-------LVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMI 406


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 303/527 (57%), Gaps = 13/527 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  I+K G   D  ++   + + ++    +  S  VF+ I++ N   W +++ GY QN
Sbjct: 159 KLHCQIVKVG-SPDSFVLTGLVDM-YAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQN 216

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F R+       ++YT   ++ AC+ + ++ +G  +H  VI+ G D + F+ 
Sbjct: 217 DCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLV 276

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLM 228
           T L+DLY K  +I  A  VFDE+   ++VSWTAMIVGYA  G   EA  +F      DL+
Sbjct: 277 TPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLL 336

Query: 229 PERSNVSWNALIGGLVKIGDL---RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           P  + V+ ++++    + G L   RS   L  ++   +      ++D YAK   +  AR 
Sbjct: 337 P--NTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARY 394

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE   D+DV+AW+++ISGY QNG   EA+++F  M S +V PD   LVS++SAC+ VG 
Sbjct: 395 VFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGA 454

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
             + + +  Y  ++ +     +V  AL++  AKCG+ + A  +F+ M  ++ +++ +MI 
Sbjct: 455 YRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIG 514

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G  I G   +++ LF  ML E L P+EV FT +L+ACSH G++ +GWR+F  M  VY  V
Sbjct: 515 GYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFV 574

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           PS +HYACMVDLL R G L+ A + +  +P++P  S  GA L  C+L+S  +LGE+   R
Sbjct: 575 PSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRR 634

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + EL P  A  YVL+SN+YA+  RW     V   MK+RGL K+PG S
Sbjct: 635 MLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWS 681



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 156/512 (30%), Positives = 263/512 (51%), Gaps = 16/512 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
            +L+  CK  + L ++H+ ++  GL +D       +SL  S    +  +  +F+RI NP+
Sbjct: 43  FSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFG-HVECARLMFDRIRNPD 101

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIF-VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            + W  +++ Y  N  + E+   +  RL +     D   F +V+KACS +    EG  +H
Sbjct: 102 LYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH 161

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +++ G   D FV T L+D+Y K +E+  +R+VFDE+ +RNVV WT+MIVGY     L 
Sbjct: 162 CQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLK 220

Query: 220 EAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMI 271
           E   +F+ M     E +  +  +L+    K+G L   + +   + +     N    T ++
Sbjct: 221 EGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLL 280

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K GD+  A S+F+     D+V+W+A+I GYAQ G P EA+K+F+D   K++ P+  
Sbjct: 281 DLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTV 340

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              S++SAC+Q G+L++   V     +  +    A    ALVDM AKC  +  A  +FET
Sbjct: 341 TTSSVLSACAQTGSLNMGRSVHCLGIK--LGSEDATFENALVDMYAKCHMIGDARYVFET 398

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + ++DV+++ S+I G + +G+  +A+ LFD+M S+ + PD +    VL+AC+ VG    G
Sbjct: 399 VFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVG 458

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
                       +  S      +++   + G  +SA  + + M  E +   W A++G   
Sbjct: 459 SSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMG-EKNTITWSAMIGGYG 517

Query: 512 LYSDIELG-ELVANRLFE-LEPQNAGSYVLLS 541
           +  D     EL  + L E LEP       +LS
Sbjct: 518 IQGDCSRSLELFGDMLKEKLEPNEVIFTTILS 549


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 290/532 (54%), Gaps = 68/532 (12%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           LI K K  +HL Q+H+ + + GL+  H ++   +   ++    L YS A+F R  NP+ F
Sbjct: 36  LIDKSKTISHLLQIHAVLFRHGLDH-HPILNFKLQRSYASLGRLDYSVALFGRTQNPSVF 94

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            W  ++ G++      +    + +++ +   P+ +TF  ++K C     +  G A+H+  
Sbjct: 95  FWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQA 150

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G D          DLY +                      T ++  YA  GD+V   
Sbjct: 151 VKLGFDS---------DLYVR----------------------TGLLDVYARGGDVV--- 176

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
                                       SA+QLFD MPE+++VS T M+  YAK G++ +
Sbjct: 177 ----------------------------SAQQLFDTMPEKSLVSLTAMLTCYAKHGELDA 208

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR LF+   +RD V W+ +I GY QNG P+EA+ +F  M     +P+E  ++S++SAC Q
Sbjct: 209 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 268

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L+   WV SY+  + +  +  HV  ALVDM +KCG+++ A  +F+ + ++DVV++ S
Sbjct: 269 LGALESGRWVHSYIENNGIQFN-VHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNS 327

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G ++HG  ++A+ LF  M   GL P  + F  +L+AC H G V +GW  F  M++ Y
Sbjct: 328 MIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEY 387

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P  EHY CMV+LLGR GH++ AYEL+ +M +EP    WG LLGAC+L+  I LGE +
Sbjct: 388 GIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKI 447

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
              L +    N+G+Y+LLSNIYA    W  V  +R+ MK+ G++K PGCSS+
Sbjct: 448 VELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 499


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 312/563 (55%), Gaps = 88/563 (15%)

Query: 58  SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +H++K G ++DH  V + I   ++   P+ ++  +F+ + +     WN ++ GY +    
Sbjct: 108 AHVLKSGYDRDH-YVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNE 166

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            E  T+F                       HV+  +E   I   VI W         T++
Sbjct: 167 EEASTLF-----------------------HVMGDQE---ISRNVITW---------TTM 191

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV--- 234
           I  + K+  +  AR  FD+MPER+VVSW AM+ GYA  G   E   +F+ M    NV   
Sbjct: 192 ITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPD 251

Query: 235 --SW------------------------------------NALIGGLVKIGDLRSARQLF 256
             +W                                     AL+    K G+L +A ++F
Sbjct: 252 ETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIF 311

Query: 257 DEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           +++     R+ V +  MI  YA+VGD+ SA+ LF+  P RD V+W+++I+GY QNG+  +
Sbjct: 312 EQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFK 371

Query: 314 AVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           A+K+F +M S   + +PDE  +VS+ SAC  +G L L NW  S L  +H+ +S + V  +
Sbjct: 372 AIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISIS-VYNS 430

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L++M ++CG+M  A  +F+ M  RD+VSY ++I G + HGHG +++ L  +M  +G+ PD
Sbjct: 431 LINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 490

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + +  +LTACSH GL+++G R FE+++      P  +HYACM+D+LGR G L+ A +L+
Sbjct: 491 RITYIAILTACSHAGLLDEGQRLFESIK-----FPDVDHYACMIDMLGRAGRLEEAMKLI 545

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMP+EPHA  +G+LL A  ++  +ELGEL A +LF++EP N+G+Y LLSNIYA+A RW 
Sbjct: 546 QSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRWK 605

Query: 552 DVCLVRSKMKERGLRKIPGCSSL 574
           +   VR  M+++G++K  G S L
Sbjct: 606 EGDKVRDTMRKQGVKKTTGLSWL 628



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 161/564 (28%), Positives = 259/564 (45%), Gaps = 126/564 (22%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+L++ C +  H H +H         Q+H +V   ++ C     P SY+  +F+   +P+
Sbjct: 2   LSLLQLCIVLVH-HSLH--------HQNHWVVL-LLTQCTRFLAPSSYTCHIFHAATHPD 51

Query: 101 TFLWNTLLKGYSQNSRFIEVF-TIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAI 158
             ++  +LK YSQ     +VF ++F  +++  +  P+   + +++K+        E    
Sbjct: 52  VRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAG-----SESMLF 106

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            A V++ G D D +V   ++ +Y K   I  ARK+FDEMP+R V  W  MI GY   G+ 
Sbjct: 107 LAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNE 166

Query: 219 VEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
            EA T+F +M +    R+ ++W  +I G  K G+L++AR  FD+MPER+VVS+  M+   
Sbjct: 167 EEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAML--- 223

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFIL 333
                                       SGYAQ G P+E +++F+DM S  NVQPDE   
Sbjct: 224 ----------------------------SGYAQGGAPEETIRLFNDMLSPGNVQPDETTW 255

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET-- 391
            +++S+CS +G+  LS  +   L           V  AL+DM+AKCGN++ A ++FE   
Sbjct: 256 ATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLG 315

Query: 392 --------------------------------MPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
                                           MP RD VS+ SMI G + +G   +A+ L
Sbjct: 316 VYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKL 375

Query: 420 FDRMLS--EGLTPDEVAFTIVLTACSHVGLVEDG-W--------------RFFEAMQNVY 462
           F+ M+S  +   PDEV    V +AC H+G +  G W                + ++ N+Y
Sbjct: 376 FEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMY 435

Query: 463 AIVPSPE---------------HYACMVDLLGRTGHLKSAYELLNSMP---VEPHASAWG 504
           +   S +                Y  ++      GH   + ELL+ M    +EP    + 
Sbjct: 436 SRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYI 495

Query: 505 ALLGACKLYSDIELGELVANRLFE 528
           A+L AC     ++ G+    RLFE
Sbjct: 496 AILTACSHAGLLDEGQ----RLFE 515


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/531 (36%), Positives = 291/531 (54%), Gaps = 47/531 (8%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSR--FIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           + A+F  I +P+   +N ++   +++ R    +       +  ++ V + Y+F   + AC
Sbjct: 102 ARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSAC 161

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           +    +R G  +H  V R    +DV +GT+L+D+Y K +    AR+VFD MPERNVVSW 
Sbjct: 162 AAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWN 221

Query: 207 AMIVGYASVGDLVEAKTVF-----------------------DLMPERSN---------- 233
           ++I  Y   G + EA  +F                        L  ER            
Sbjct: 222 SLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKR 281

Query: 234 -------VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
                  V  NAL+    K G    AR +FD MP R+VVS T+++ GYAK  ++  A+ +
Sbjct: 282 DRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVV 341

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    +++V+AW+ LI+ YAQNG+ +EA+++F  +   ++ P  +   ++++AC  +  L
Sbjct: 342 FSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVL 401

Query: 347 DLSNWVDSYLSRSHMDL-----SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            L      ++ +          S   V  +LVDM  K G++D  A++FE M  RD VS+ 
Sbjct: 402 QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWN 461

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           +MI G + +G  + A+ LF+RML     PD V    VL+AC H GLV++G R F  M   
Sbjct: 462 AMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTED 521

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           + I PS +HY CMVDLLGR GHLK A EL+  MP EP +  W +LLGAC+L+ ++ELGE 
Sbjct: 522 HGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGER 581

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            A RLFEL+P+N+G YVLLSN+YA   +W DV  VR  MK+RG+ K PGCS
Sbjct: 582 TAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCS 632



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 46/370 (12%)

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           A H  V++  V  + F+  +L+  Y +   +  AR+VFD +P RN  S+ A++  YA +G
Sbjct: 38  AAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLG 97

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIG----------------------------- 247
              EA+ +F+ +P+    S+NA++  L + G                             
Sbjct: 98  RPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASA 157

Query: 248 --------DLRSARQ---LFDEMPERNVVSY-TTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                   DLR+  Q   L    P  + V   T ++D YAK      AR +F+A P+R+V
Sbjct: 158 LSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W++LI+ Y QNG   EA+ +F +M +    PDE  L S+MSAC+ +        V ++
Sbjct: 218 VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + +         +  ALVDM AKCG    A  +F++MP+R VVS  S++ G +   +   
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  +F +M+ + +    +A+ +++ A +  G  E+  R F  ++   +I P+   Y  ++
Sbjct: 338 AQVVFSQMVEKNV----IAWNVLIAAYAQNGEEEEAIRLFVQLKR-DSIWPTHYTYGNVL 392

Query: 476 DLLGRTGHLK 485
           +  G    L+
Sbjct: 393 NACGNIAVLQ 402



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 6/295 (2%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N L+    ++G LR AR++FD +P RN  SY  ++  YA++G    AR+LFEA PD D  
Sbjct: 56  NTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQC 115

Query: 297 AWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           +++A+++  A++G+    +A++  + M + +   + +   S +SAC+   +L     V  
Sbjct: 116 SYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHG 175

Query: 355 YLSRS-HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            ++RS H D    H+  ALVDM AKC     A  +F+ MP R+VVS+ S+I     +G  
Sbjct: 176 LVARSPHAD--DVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPV 233

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A+ LF  M++ G  PDEV  + V++AC+ +    +G +    M     +         
Sbjct: 234 GEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNA 293

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           +VD+  + G    A  + +SMP     S    L G  K  +++E  ++V +++ E
Sbjct: 294 LVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAK-SANVEDAQVVFSQMVE 347



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 172/382 (45%), Gaps = 61/382 (15%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD-----HSLVAHF---------- 75
           FP    L S ++       +    QVH+H++K+   +D     ++LV  +          
Sbjct: 249 FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEAR 308

Query: 76  ----------------ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
                           I   ++ +  +  +  VF+++V  N   WN L+  Y+QN    E
Sbjct: 309 CIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEE 368

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR------WGVDEDVFV 173
              +FV+L R+   P  YT+  V+ AC ++  ++ G   H  V++      +G + DVFV
Sbjct: 369 AIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFV 428

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPERS 232
           G SL+D+Y K   I    KVF+ M  R+ VSW AMIVGYA  G   +A  +F+ ++    
Sbjct: 429 GNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNE 488

Query: 233 NVSWNALIGGLVKIGD---LRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSAR 284
           N     +IG L   G    +   R+ F  M E + ++     YT M+D   + G +  A 
Sbjct: 489 NPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAE 548

Query: 285 SLFEAAP-DRDVVAWSALISG--YAQNGQPDE--AVKIFSDMCSKNVQPDEFILVSLMSA 339
            L +  P + D V W++L+      +N +  E  A ++F ++  +N  P  ++L+S M A
Sbjct: 549 ELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLF-ELDPENSGP--YVLLSNMYA 605

Query: 340 CSQVGNLDLSNWVDSYLSRSHM 361
                  ++  W D +  R  M
Sbjct: 606 -------EMGKWADVFRVRRSM 620


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 195/521 (37%), Positives = 293/521 (56%), Gaps = 36/521 (6%)

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           +Y +  F      + FLWN ++K +S           F  ++      DK++  LV+KAC
Sbjct: 47  NYHSCSFAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKAC 106

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S +  V+EG  IH  + + G+  D+F+   LI LY K   +  AR++FD MP+R+ VS+ 
Sbjct: 107 SRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYN 166

Query: 207 AMIVGYASVGDLVEAKTVFDLMP----------------------------------ERS 232
           +MI GY   G +  A+ +FDLMP                                  E+ 
Sbjct: 167 SMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKD 226

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
            +SWN+LI G VK G +  A+ LF  MP R+VV++ TMIDGYAK+G +  A++LF+  P 
Sbjct: 227 LISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 286

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNW 351
           RDVVA++++++GY QN    EA++IFSDM  + ++ PDE  LV ++SA +Q+G L  +  
Sbjct: 287 RDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 346

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           +  Y+      L    +  AL+DM +KCG++ +A  +FE + N+ +  + +MI GL+IHG
Sbjct: 347 MHLYIVEKQFFLG-GKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHG 405

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
            G  A  +   +    + PD++ F  +L ACSH GLV++G   FE M+  + I P  +HY
Sbjct: 406 LGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 465

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
            CMVD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E GE+VA  L     
Sbjct: 466 GCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAG 525

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            N  SYVLLSN+YA+   W D   VR+ MKER L+K+PGCS
Sbjct: 526 YNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCS 566



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 10/240 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H +I++K       L    I + +S    +  +  
Sbjct: 323 PDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDM-YSKCGSIQQAML 381

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF RI N +   WN ++ G + +      F + + + R    PD  TF  ++ ACSH   
Sbjct: 382 VFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGL 441

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ + +EMP E N V W   +
Sbjct: 442 VKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFL 501

Query: 210 VGYA-----SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
              +       G++V    +  L    +  S+  L       G  + AR++   M ER +
Sbjct: 502 TACSHHKEFETGEVVAKHLI--LQAGYNPSSYVLLSNMYASFGMWKDARRVRTMMKEREL 559


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 183/486 (37%), Positives = 280/486 (57%), Gaps = 44/486 (9%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +FN     +   WN L+ GY Q  +  E   +F R+      P +            
Sbjct: 56  ARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM------PGR------------ 97

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
                        V+ W +         ++  Y +R ++  AR++FD  P R+V +WTA+
Sbjct: 98  ------------DVVSWNI---------MVSGYARRGDMVEARRLFDAAPVRDVFTWTAV 136

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           + GYA  G L EA+ VFD MPER+ VSWNA++   ++   +  A++LF+ MP RNV S+ 
Sbjct: 137 VSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWN 196

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNV 326
           TM+ GYA+ G +  A+++F+  P +D V+W+A+++ Y+Q G  +E +++F +M  C + V
Sbjct: 197 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 256

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
               F  V  +S C+ +  L+    +   L R+   +    V  AL+ M  KCGNM+ A 
Sbjct: 257 NRSAFACV--LSTCADIAALECGMQLHGRLIRAGYGVG-CFVGNALLAMYFKCGNMEDAR 313

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
             FE M  RDVVS+ +MI G + HG G++A+ +FD M +    PD++    VL ACSH G
Sbjct: 314 NAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSG 373

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LVE G  +F +M + + +   PEHY CM+DLLGR G L  A++L+  MP EP ++ WGAL
Sbjct: 374 LVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGAL 433

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGA +++ + ELG   A ++FELEP+NAG YVLLSNIYA++ +W D   +R  M+ERG++
Sbjct: 434 LGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 493

Query: 567 KIPGCS 572
           K+PG S
Sbjct: 494 KVPGFS 499



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 146/270 (54%), Gaps = 19/270 (7%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           +S AR  FD  PE++ VSW  M+  Y   G + EA+ +F+   E   +SWNAL+ G V+ 
Sbjct: 22  VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 81

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           G +  AR+LFD MP R+VVS+  M+ GYA+ GDM  AR LF+AAP RDV  W+A++SGYA
Sbjct: 82  GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYA 141

Query: 307 QNGQPDEAVKIFSDM-----CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           QNG  +EA ++F  M      S N     +I   +M    ++ N+     V S+ +    
Sbjct: 142 QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT---- 197

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
                     ++   A+ G ++ A  +F+TMP +D VS+ +M+   S  G   + + LF 
Sbjct: 198 ----------MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFI 247

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            M   G   +  AF  VL+ C+ +  +E G
Sbjct: 248 EMGRCGEWVNRSAFACVLSTCADIAALECG 277



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 14/253 (5%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  + AVF+ +   +   W  +L  YSQ     E   +F+ + R     ++  F
Sbjct: 202 YAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAF 261

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             V+  C+ + ++  G  +H  +IR G     FVG +L+ +Y K   +  AR  F+EM E
Sbjct: 262 ACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEE 321

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL 255
           R+VVSW  MI GYA  G   EA  +FD+M   S    +++   ++      G +      
Sbjct: 322 RDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISY 381

Query: 256 FDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNG 309
           F  M     V+     YT MID   + G +  A  L +  P + D   W AL+     + 
Sbjct: 382 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 441

Query: 310 QPD----EAVKIF 318
            P+     A KIF
Sbjct: 442 NPELGRSAAEKIF 454


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 177/441 (40%), Positives = 271/441 (61%), Gaps = 47/441 (10%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           +++V   T+++  + K + +  AR  FDEMPER V SW AM+ GYA  G   E   +FD 
Sbjct: 195 EKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDD 254

Query: 228 MPERSN----VSW-----------------------------------NALIGGLVKIGD 248
           M    N     +W                                    AL+    K G+
Sbjct: 255 MLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGN 314

Query: 249 LRSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
           L  A+++F+++   +N V++  MI  YA+VGD++ AR LF   P+R+ V+W+++I+GYAQ
Sbjct: 315 LEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQ 374

Query: 308 NGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           NG+  +A+++F +M  SK+ +PDE  +VS+ SAC  +G L L NW  S L  +H+ LS +
Sbjct: 375 NGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSIS 434

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
               +L+ M  +CG+M+ A   F+ M  +D+VSY ++I GL+ HGHG +++ L  +M  +
Sbjct: 435 GY-NSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKED 493

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G+ PD + +  VLTACSH GL+E+GW+ FE+++     VP  +HYACM+D+LGR G L+ 
Sbjct: 494 GIGPDRITYIGVLTACSHAGLLEEGWKVFESIK-----VPDVDHYACMIDMLGRVGKLEE 548

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A +L+ SMP+EPHA  +G+LL A  ++  +ELGEL A +LF++EP N+G+YVLLSNIYA 
Sbjct: 549 AVKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYAL 608

Query: 547 ADRWLDVCLVRSKMKERGLRK 567
           A RW DV  VR KM+++G++K
Sbjct: 609 AGRWKDVDKVRDKMRKQGVKK 629



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 212/432 (49%), Gaps = 74/432 (17%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           HL Q+H+ ++       +  VA  ++ C  L  P +Y++ +F     PN  ++  +LK Y
Sbjct: 18  HLRQLHAQLVLHSQHHHNHWVALLLTQCTHLLAPSNYTSHIFRAATYPNVHVFTCMLKYY 77

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYT--FPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           SQ     +V     + ++       YT  +P++IK+       + G  +HA +++ G   
Sbjct: 78  SQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIKSAG-----KAGMLLHAYLLKLGHSH 132

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D  V  +++ +Y K   I  ARK+F                               D MP
Sbjct: 133 DHHVRNAIMGIYAKYGCIELARKLF-------------------------------DEMP 161

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEM--PERNVVSYTTMIDGYAKVGDMTSARSLF 287
           +R+   WN +I G  K G+ + A +LF  M   E+NV+++TTM+ G+AK+ ++ +AR  F
Sbjct: 162 DRTAADWNVIISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYF 221

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P+R V +W+A++SGYAQ+G   E V++F DM S   +PDE   V+++S+CS +G+  
Sbjct: 222 DEMPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPC 281

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET---------------- 391
           L+  +   L R +   S   V  AL+DM+AKCGN++ A ++FE                 
Sbjct: 282 LAESIVRKLDRMNFR-SNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISA 340

Query: 392 ----------------MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML-SEGLTPDEVA 434
                           MP R+ VS+ SMI G + +G   +A+ LF  M+ S+   PDEV 
Sbjct: 341 YARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVT 400

Query: 435 FTIVLTACSHVG 446
              V +AC H+G
Sbjct: 401 MVSVFSACGHLG 412



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 15/222 (6%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H + IK  +   +SL+  ++  C S+      +   F  +   +   +NTL+ G + + 
Sbjct: 424 LHENHIKLSISGYNSLIFMYLR-CGSMED----ARITFQEMATKDLVSYNTLISGLAAHG 478

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              E   +  ++  +   PD+ T+  V+ ACSH   + EG  +  ++    VD       
Sbjct: 479 HGTESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIKVPDVDH----YA 534

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE-----AKTVFDLMPE 230
            +ID+ G+  ++  A K+   MP          ++   S+   VE     A  +F + P 
Sbjct: 535 CMIDMLGRVGKLEEAVKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPH 594

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
            S  ++  L       G  +   ++ D+M ++ V   T +++
Sbjct: 595 NSG-NYVLLSNIYALAGRWKDVDKVRDKMRKQGVKKTTFIVE 635


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 326/602 (54%), Gaps = 63/602 (10%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI------S 77
           SR  P +   P+     + L+  CK    L+++H+ +I  GL ++  L    +      S
Sbjct: 7   SRHHPWSSISPT-----IHLLGTCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASAS 61

Query: 78  LCHSLATPL--SYSTAVFNR--------IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRL 127
              S   P    ++  VF+         + +P  FLWN ++K +S      +   +   L
Sbjct: 62  ASASSRRPFLAEFARCVFHEHHVSSSGEVEDP--FLWNVVIKSHSHGVDPRKALFLLC-L 118

Query: 128 IREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           + E  VP DK++F L +KACS +  V+EGT +H  +I+ G   D+F+   LI LY K   
Sbjct: 119 MLENGVPVDKFSFSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGC 178

Query: 187 ISCARKVFDEMPER---------------------------------NVVSWTAMIVGYA 213
           +  AR+VFD MP+R                                 N+++W +MI GYA
Sbjct: 179 LGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYA 238

Query: 214 SVGDLVE-AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
              D V  A  +FD MPE+  +SWN++IGG VK G +  A+ LFD MP R+VV++  MID
Sbjct: 239 QRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMID 298

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEF 331
           GY K+G +  A++LF+  P RDVV +++++SG  QN    EA+++F+ M  + ++ PDE 
Sbjct: 299 GYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDET 358

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL-SRAHVIAALVDMNAKCGNMDRAAELFE 390
            LV ++SA +Q+G L  S  +D +L        S   +  AL+DM +KCG++  A  +FE
Sbjct: 359 SLVIVLSAXAQLGRL--SKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFE 416

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            + ++ +  + +MI GL++HG G  A  +  ++    + PD + F  VL ACSH GLV++
Sbjct: 417 GIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKE 476

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G   FE M+  + I P  +HY CMVD+L R+G ++ A  L+  MP+EP+   W   L AC
Sbjct: 477 GLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTAC 536

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
             + + E GELVA  L      N  SYVLLSN+YA+   W DV  VR+ MKE+ + KIPG
Sbjct: 537 SHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPG 596

Query: 571 CS 572
           CS
Sbjct: 597 CS 598


>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
 gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 535

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 184/412 (44%), Positives = 267/412 (64%), Gaps = 4/412 (0%)

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           R G    +    SL+    +  +++ AR +FD MP R+VVSW +M+ G A  G L  A  
Sbjct: 120 RAGAHSFLVSRNSLLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIE 179

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
           +FD MPER+  SWNA++ G +  GDL  AR+LF++MP R+ VS+ TMI GYA  GD+ +A
Sbjct: 180 LFDKMPERNAASWNAVMCGYIAQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAA 239

Query: 284 RSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV--QPDEFILVSLMSAC 340
             LFE   ++ D+ AW+A+I+ YA+NG   EA+ +F+ M   +V   P+E    S++SAC
Sbjct: 240 GELFERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISAC 299

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           SQ+G+L    W +S++    ++L   H+  ALVD++ K G +DRA +LF  +  RDVVSY
Sbjct: 300 SQLGDLRFGLWAESFMGSVGIELDD-HLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSY 358

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I G  ++G   +AVSLF  M    ++P+ V F  +L+A S+ GL+E+    F +M  
Sbjct: 359 SAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMTE 418

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I PS EHY  MVDLLGR+G L  AY+L+  MP++P AS WGALL AC+L++++ELGE
Sbjct: 419 KYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRLHNNVELGE 478

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +VA++ FELEP  +G Y+LL NIY+ A++W  V  +R  M ERGL K+PG S
Sbjct: 479 IVASKCFELEPGESGYYILLGNIYSEANKWEKVKRLRKIMAERGLNKMPGSS 530



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 90/424 (21%)

Query: 63  KGLEQDHSLVAHFISLCHSL--ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120
           +G    HS +    SL  SL  +  L+ + A+F+R+   +   WN+++ G ++       
Sbjct: 118 RGRAGAHSFLVSRNSLLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAA 177

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180
             +F      + +P++         C ++                               
Sbjct: 178 IELF------DKMPERNAASWNAVMCGYI------------------------------- 200

Query: 181 YGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV-SWNAL 239
              + +++ AR++F++MP R+ VSW  MI GYA+ GD+  A  +F+ M  + ++ +WNA+
Sbjct: 201 --AQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAAGELFERMENKKDLYAWNAM 258

Query: 240 IGGLVKIGDLRSARQLFDE--------MPERNVVS------------------------- 266
           I    K G  R A  +F+         MP     S                         
Sbjct: 259 IACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGLWAESFMGSV 318

Query: 267 --------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
                    T ++D + K G +  A  LF     RDVV++SA+I G   NG+ +EAV +F
Sbjct: 319 GIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIVGCGMNGKFNEAVSLF 378

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M    + P+    V L+SA S  G ++ +    + ++  +           +VD+  +
Sbjct: 379 KEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMTEKYKISPSMEHYTIMVDLLGR 438

Query: 379 CGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVAF 435
            G +D A +L   MP + D   + +++    +H +    V L + + S+   L P E  +
Sbjct: 439 SGKLDEAYQLIMQMPMKPDASIWGALLLACRLHNN----VELGEIVASKCFELEPGESGY 494

Query: 436 TIVL 439
            I+L
Sbjct: 495 YILL 498



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 23/264 (8%)

Query: 244 VKIGDLRSARQLFDEMPERN----------VVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
            ++ D   A  L DE P R           +VS  +++    + GD+ +AR+LF+  P R
Sbjct: 97  ARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSRNSLLASLLRSGDLAAARALFDRMPVR 156

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           DVV+W+++++G A+ G  D A+++F  M  +N      ++      C  +   DL+   +
Sbjct: 157 DVVSWNSMVAGLAKAGHLDAAIELFDKMPERNAASWNAVM------CGYIAQGDLAQARE 210

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGH 412
            +     M +        ++   A  G++  A ELFE M N +D+ ++ +MI   + +G 
Sbjct: 211 LF---EQMPVRSNVSWITMISGYANSGDVHAAGELFERMENKKDLYAWNAMIACYAKNGC 267

Query: 413 GRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
            R+A+++F+RML     + P+E  F+ V++ACS +G +  G  + E+      I      
Sbjct: 268 AREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGL-WAESFMGSVGIELDDHL 326

Query: 471 YACMVDLLGRTGHLKSAYELLNSM 494
              +VDL  ++G +  A++L   +
Sbjct: 327 RTALVDLHTKSGRIDRAFDLFRGL 350



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 61/262 (23%)

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ--------------- 342
           W+  I   A  G+P  AV ++        +P  F L +++ + S+               
Sbjct: 12  WTLAIRAAADQGRPRRAVALYLSSLRSGRRPCPFALAAVLKSVSRLLLPAAHPLLAAAAA 71

Query: 343 ---VGNLDLSNWVDSY--LSRSHM-----DLSRAHVI----------------AALVDMN 376
                 L L      Y   + +H+     D SRAH +                + LV  N
Sbjct: 72  SIHAHLLRLGLLAHPYPRAALAHLYARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSRN 131

Query: 377 A------KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +      + G++  A  LF+ MP RDVVS+ SM+ GL+  GH   A+ LFD+M      P
Sbjct: 132 SLLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKM------P 185

Query: 431 DEVAFTIVLTACSHV--GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
           +  A +     C ++  G +      FE M      V S   +  M+     +G + +A 
Sbjct: 186 ERNAASWNAVMCGYIAQGDLAQARELFEQMP-----VRSNVSWITMISGYANSGDVHAAG 240

Query: 489 ELLNSMPVEPHASAWGALLGAC 510
           EL   M  +    AW A++ AC
Sbjct: 241 ELFERMENKKDLYAWNAMI-AC 261


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 317/560 (56%), Gaps = 22/560 (3%)

Query: 23  CSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           C++   ++F K  C     T I K K Q H   + +H++   L    S +  F++L HS 
Sbjct: 8   CTKLISVDFLKTHC-----TSISKTK-QAHALLLRTHLLHNPLFS--SKLISFLALSHS- 58

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPL 141
              L+Y+  +F ++ NP+ F+ NT+++GY+++    E  +++  ++ E  VP D YT+P 
Sbjct: 59  -GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMV-ERGVPVDNYTYPF 116

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V+ AC+ + +V+ G   H  V++ G   D+FV  +LI  Y       CA  VFDE   R+
Sbjct: 117 VLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRD 176

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSN-----VSWNALIGGLVKIGDLRSARQLF 256
           VV+W  MI  + + G   +A  + D M +  N     V+  +L+    ++G+L   + L 
Sbjct: 177 VVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLH 236

Query: 257 DEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
               E     N+     ++D Y K  D+ SA+ +F    ++DV++W++++SG A++G   
Sbjct: 237 SYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQ 296

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F  M    ++ DE  LV ++SAC+Q G LD   ++   + +  ++     +  AL
Sbjct: 297 EALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLV-LETAL 355

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM AKCG++D A ++F  M  R+V ++ ++I GL++HGHG  A+SLFD+M  + L PD+
Sbjct: 356 VDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDD 415

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           V F  +L ACSH GLV++G   F+AM+N + I P  EHY C+VDLL R   +  A   + 
Sbjct: 416 VTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIE 475

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           +MP++ ++  W  LLGAC+     +L E +  R+ ELEP + G YV+LSN+YA   +W  
Sbjct: 476 NMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDH 535

Query: 553 VCLVRSKMKERGLRKIPGCS 572
              +R +MK +G+ K PGCS
Sbjct: 536 ALKLRKQMKNKGIEKTPGCS 555


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 190/531 (35%), Positives = 294/531 (55%), Gaps = 48/531 (9%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLS------YSTAVFNRIVNPNTFLWN 105
           L Q+H+ +I  G   +   +   + +   S+  P +      Y+  +F +I  P+TF+WN
Sbjct: 17  LRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWN 76

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
           T ++G SQ+   +    ++ ++      PD +TFPLV+KAC+ +  V  G+ +H  V R 
Sbjct: 77  TYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRL 136

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G   +V V  +L+                               V +A  GDL  A  +F
Sbjct: 137 GFGSNVVVRNTLL-------------------------------VFHAKCGDLKVANDIF 165

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           D   +   V+W+ALI G  + GDL  AR+LFDEMP+R++VS+  MI  Y K G+M  AR 
Sbjct: 166 DDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARR 225

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LF+ AP +DVV+W+A++ GY  +    EA+++F +MC     PDE  ++SL+SAC+ +G 
Sbjct: 226 LFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG- 284

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIA----ALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            D    V + +    M+L++  +      ALVDM AKCGN+ +   +F  + ++D+VS+ 
Sbjct: 285 -DXGEKVHAKI----MELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWN 339

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           S+I GL+ HGH  +++ LF  M    + PDE+ F  VL ACSH G V++G R+F  M+N 
Sbjct: 340 SVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNK 399

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y I P+  H  C+VD+L R G LK A++ + SM +EP+A  W +LLGACK++ D+EL + 
Sbjct: 400 YKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKR 459

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              +L  +    +G YVLLSN+YA+   W     VR  M + G+ K  G S
Sbjct: 460 ATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSS 510


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 190/488 (38%), Positives = 288/488 (59%), Gaps = 11/488 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  VF+ + + N   W ++++GY +N    E   +F  +  +  V    ++ +++  
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV----SWTVMLGG 157

Query: 146 CSHVLSVREGTAIHA-AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
                 ++EG    A  +     ++DV   T++I  Y +   +  AR +FDEMP+RNVV+
Sbjct: 158 L-----LQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT 212

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           WTAM+ GYA  G +  A+ +F++MPER+ VSW A++ G    G +R A  LFD MP + V
Sbjct: 213 WTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPV 272

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V    MI G+   G++  AR +F+   +RD   WSA+I  Y + G   EA+ +F  M  +
Sbjct: 273 VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQRE 332

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            +  +   L+S++S C  + +LD    V + L RS  D    +V + L+ M  KCGN+ R
Sbjct: 333 GLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD-QDLYVASVLITMYVKCGNLVR 391

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A ++F   P +DVV + SMI G S HG G +A+++F  M S G+ PD+V F  VL+ACS+
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSY 451

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            G V++G   FE M+  Y + P  EHYAC+VDLLGR   +  A +L+  MP+EP A  WG
Sbjct: 452 SGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWG 511

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGAC+ +  ++L E+   +L +LEP+NAG YVLLSN+YA   RW DV ++R K+K R 
Sbjct: 512 ALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARS 571

Query: 565 LRKIPGCS 572
           + K+PGCS
Sbjct: 572 VTKLPGCS 579



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 223/460 (48%), Gaps = 69/460 (15%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFL--WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           C++    L ++  VF+    P+  +  WN ++  Y +  +  E   +F      E +P +
Sbjct: 31  CYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLF------EKMPQR 84

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
            T                        + W           LI  + K   +S AR+VFD 
Sbjct: 85  NT------------------------VSW---------NGLISGHIKNGMLSEARRVFDT 111

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256
           MP+RNVVSWT+M+ GY   GD+ EA+ +F  MP ++ VSW  ++GGL++ G +  AR+LF
Sbjct: 112 MPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLF 171

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           D MPE++VV+ T MI GY + G +  AR+LF+  P R+VV W+A++SGYA+NG+ D A K
Sbjct: 172 DMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARK 231

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           +F  M  +N    E    +++   +  G + + S+  D+      M +    V   ++  
Sbjct: 232 LFEVMPERN----EVSWTAMLLGYTHSGRMREASSLFDA------MPVKPVVVCNEMIMG 281

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
               G +D+A  +F+ M  RD  ++ +MIK     G+  +A+ LF RM  EGL  +  + 
Sbjct: 282 FGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSL 341

Query: 436 TIVLTACSHVGLVEDGWRFFEAM------QNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
             VL+ C  +  ++ G +    +      Q++Y         + ++ +  + G+L  A +
Sbjct: 342 ISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVA-------SVLITMYVKCGNLVRAKQ 394

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           + N  P++     W +++     YS   LGE   N   ++
Sbjct: 395 VFNRFPLK-DVVMWNSMITG---YSQHGLGEEALNVFHDM 430



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 187/362 (51%), Gaps = 31/362 (8%)

Query: 178 IDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           I  Y +  ++  ARKVFDE  +P R V SW AM+  Y       EA  +F+ MP+R+ VS
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           WN LI G +K G L  AR++FD MP+RNVVS+T+M+ GY + GD+  A  LF   P ++V
Sbjct: 89  WNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV 148

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W+ ++ G  Q G+ D+A K+F  M  K+V      + +++    + G LD        
Sbjct: 149 VSWTVMLGGLLQEGRVDDARKLFDMMPEKDV----VAVTNMIGGYCEEGRLD-------- 196

Query: 356 LSRSHMD-LSRAHVI--AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
            +R+  D + + +V+   A+V   A+ G +D A +LFE MP R+ VS+ +M+ G +  G 
Sbjct: 197 EARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGR 256

Query: 413 GRQAVSLFDRM-LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
            R+A SLFD M +   +  +E+     L      G V+   R F+ M+           +
Sbjct: 257 MREASSLFDAMPVKPVVVCNEMIMGFGLN-----GEVDKARRVFKGMKE-----RDNGTW 306

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL---LGACKLYSDIELGELVANRLFE 528
           + M+ +  R G+   A  L   M  E  A  + +L   L  C   + ++ G+ V  +L  
Sbjct: 307 SAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR 366

Query: 529 LE 530
            E
Sbjct: 367 SE 368



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 6/183 (3%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           +NFP    L+S L++        H  QVH+ +++   +QD  + +  I++ +     L  
Sbjct: 336 LNFPS---LISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITM-YVKCGNLVR 391

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  VFNR    +  +WN+++ GYSQ+    E   +F  +      PD  TF  V+ ACS+
Sbjct: 392 AKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSY 451

Query: 149 VLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
              V+EG  +   +  ++ V+  +     L+DL G+  +++ A K+ ++MP E + + W 
Sbjct: 452 SGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWG 511

Query: 207 AMI 209
           A++
Sbjct: 512 ALL 514



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 299 SALISGYAQNGQPDEAVKIFSD--MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           S  I+ YA+NGQ D A K+F +  +  + V     ++ +   A      L L   +    
Sbjct: 26  SYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRN 85

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           + S   L   H+         K G +  A  +F+TMP+R+VVS+ SM++G   +G   +A
Sbjct: 86  TVSWNGLISGHI---------KNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEA 136

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM--QNVYAIVPSPEHYACM 474
             LF  M  + +    V++T++L      G V+D  + F+ M  ++V A+         M
Sbjct: 137 ERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTN-------M 185

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           +      G L  A  L + MP + +   W A++        ++    VA +LFE+ P+
Sbjct: 186 IGGYCEEGRLDEARALFDEMP-KRNVVTWTAMVSGYARNGKVD----VARKLFEVMPE 238


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 301/526 (57%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  +I  G + +   +   ++L ++    +  +  +F R+   +   WNT++ GY+QN
Sbjct: 163 EIHGMVITNGFQSNLFAMTAVVNL-YAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   + +++      PD  T   V+ A + + ++R G +IH    R G +  V V 
Sbjct: 222 GFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA 281

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF----DLMPE 230
           T+++D Y K   +  AR VF  M  RNVVSW  MI GYA  G+  EA   F    D   E
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSL 286
            +NVS    +     +GDL   R +   + E+    +V    ++I  Y+K   +  A S+
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASV 401

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F     + VV W+A+I GYAQNG  +EA+ +F +M S +++PD F LVS+++A + +   
Sbjct: 402 FGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVT 461

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             + W+     R+ MD     V  AL+D +AKCG +  A +LF+ M  R V+++ +MI G
Sbjct: 462 RQAKWIHGLAIRTLMD-KNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDG 520

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              +GHGR+A+ LF+ M +  + P+E+ F  V+ ACSH GLVE+G  +FE+M+  Y + P
Sbjct: 521 YGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEP 580

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + +HY  MVDLLGR G L  A++ +  MPV+P  +  GA+LGAC+++ ++ELGE  A+ L
Sbjct: 581 TMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADEL 640

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           F+L+P + G +VLL+N+YA+A  W  V  VR+ M+++G++K PGCS
Sbjct: 641 FDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCS 686



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/539 (27%), Positives = 254/539 (47%), Gaps = 57/539 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L++ C     LHQ+   IIK G   +H      ISL     + ++ +  VF  + +    
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNS-ITEAARVFEPVEHKLDV 108

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           L++T+LKGY++NS   +    + R+  +E +P  Y F  +++     L +R G  IH  V
Sbjct: 109 LYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I  G   ++F  T++++LY K ++I  A K+F+ MP+R++VSW  ++ GYA  G    A 
Sbjct: 169 ITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAV 228

Query: 223 TVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGY 274
            V   M E      +++  +++  +  +  LR  R +    F    E  V   T M+D Y
Sbjct: 229 QVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTY 288

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K G + SAR +F+    R+VV+W+ +I GYAQNG+ +EA   F  M  + V+P    ++
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMM 348

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
             + AC+ +G+L+   +V   L    +      V+ +L+ M +KC  +D AA +F  + +
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFD-VSVMNSLISMYSKCKRVDIAASVFGNLKH 407

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV--------- 445
           + VV++ +MI G + +G   +A++LF  M S  + PD      V+TA + +         
Sbjct: 408 KTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWI 467

Query: 446 --------------------------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
                                     G ++   + F+ MQ  + I      +  M+D  G
Sbjct: 468 HGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYG 522

Query: 480 RTGHLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
             GH + A +L N M    V+P+   + +++ AC     +E G       FE   +N G
Sbjct: 523 TNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMY----YFESMKENYG 577


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 297/527 (56%), Gaps = 66/527 (12%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F  +  P+   WN+++ G++Q+ RF E    FV++ RE+ + ++Y+F   + A
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ ++ +  GT +HA V +     DV++G++LID+Y K   ++CA +VF  M ERN+V+W
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 206 TAMIVGYASVGDLVEAKTVF------DLMPE----------------------------R 231
            ++I  Y   G   EA  VF       L P+                            +
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 232 SN------VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           +N      V  NAL+    K   +  AR++FD M  RNVVS T+M+ GYA+   + +AR 
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F     R+VV+W+ALI+GY QNG+ +EA+++F  +  +++ P  +   +L+ +   VGN
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGN 396

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
                                    +L+DM  KCG+++  + +FE M  RD VS+ ++I 
Sbjct: 397 -------------------------SLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIV 431

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G + +G+G +A+ +F +ML  G  PD V    VL ACSH GLVE+G  +F +M+  + ++
Sbjct: 432 GYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLI 490

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  +HY CMVDLLGR G L  A  L+ +MPV P A  WG+LL ACK++ +IE+G+  A +
Sbjct: 491 PLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEK 550

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L E++P N+G YVLLSN+YA   RW DV  VR  M+++G+ K PGCS
Sbjct: 551 LLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCS 597



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 196/433 (45%), Gaps = 60/433 (13%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           L+R+  +P+   F  ++ +C    S R    +HA ++      ++F+   LID+YGK   
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           +  ARK+FD MP+RN  +W ++I      G L EA  +F  MPE    SWN+++ G  + 
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 247 GDLRSARQLFDEMPERNVV--------------------------------SYTT----- 269
                + + F +M   + +                                 Y+T     
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185

Query: 270 --MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
             +ID Y+K G +  A  +F    +R++V W++LI+ Y QNG   EA+++F  M    ++
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PDE  L S++SAC+ +  L     + + + +++       +  ALVDM AKC  ++ A  
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ M  R+VVS  SM+ G +     + A  +F +M    +    V++  ++   +  G 
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGE 361

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYA-------------CMVDLLGRTGHLKSAYELLNSM 494
            E+  R F  ++   +I P+  HY               ++D+  + G ++    +   M
Sbjct: 362 NEEALRLFRLLKR-ESIWPT--HYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKM 418

Query: 495 PVEPHASAWGALL 507
             E    +W A++
Sbjct: 419 K-ERDCVSWNAII 430



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 157/364 (43%), Gaps = 63/364 (17%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF-----LWNTLLK 109
           +V   ++  GLE D   +A  +S C SL   L     +  R+V  N F     L N L+ 
Sbjct: 234 EVFVRMMDSGLEPDEVTLASVVSACASLCA-LKEGLQIHARVVKTNKFRDDLVLGNALVD 292

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
            Y++ S+  E   +F R                       +S+R                
Sbjct: 293 MYAKCSKVNEARRVFDR-----------------------MSIR---------------- 313

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           +V   TS++  Y +   +  AR +F +M +RNVVSW A+I GY   G+  EA  +F L+ 
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
             S    +   G L+K                 ++    ++ID Y K G +     +FE 
Sbjct: 374 RESIWPTHYTFGNLLK----------------SDIFVGNSLIDMYMKCGSIEDGSRVFEK 417

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
             +RD V+W+A+I GYAQNG   EA++IF  M     +PD   ++ ++ ACS  G ++  
Sbjct: 418 MKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEG 477

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLS 408
                 +    +   + H    +VD+  + G ++ A  L E MP N D V + S++    
Sbjct: 478 RHYFFSMEEHGLIPLKDH-YTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACK 536

Query: 409 IHGH 412
           +HG+
Sbjct: 537 VHGN 540



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 38/277 (13%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +  KC       +V   +  + +  + S+V+ +     + A  +  +  +F+++   N  
Sbjct: 293 MYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY-----ARAASVKAARFMFSKMTQRNVV 347

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN L+ GY+QN    E   +F  L RE   P  YTF  ++K+                 
Sbjct: 348 SWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS----------------- 390

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
                  D+FVG SLID+Y K   I    +VF++M ER+ VSW A+IVGYA  G   EA 
Sbjct: 391 -------DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEAL 443

Query: 223 TVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV----SYTTMIDGY 274
            +F  M     +  +V+   ++      G +   R  F  M E  ++     YT M+D  
Sbjct: 444 QIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLL 503

Query: 275 AKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQ 310
            + G +  A++L EA P + D V W +L++    +G 
Sbjct: 504 GRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGN 540


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 194/530 (36%), Positives = 307/530 (57%), Gaps = 48/530 (9%)

Query: 86  LSYSTAVFNRIV-NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
           L  +  +FN     PN +++NT++ G+  ++   + FTI+  +++    PD+ TF  +++
Sbjct: 16  LELAILLFNHFTPYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQ 73

Query: 145 ACSHVLSVREGTAIHAAVIRWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
               V  V++   IH   + +G+  ++ ++  SLI  Y       CAR++FDEM +RNVV
Sbjct: 74  TTKFVAEVKQ---IHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVV 130

Query: 204 SWTAMIVGYASVGDLVEAKTVF------DLMPE--------------------------- 230
           S+  MI+G+A VG+++    +F       L P+                           
Sbjct: 131 SYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQI 190

Query: 231 -----RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
                 SN + +NAL+   VK  +L+ AR++FD   E++ VS+ T+I GYAKVG++  A 
Sbjct: 191 EKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELAC 250

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LF   P RD+V+W++LISGYAQNG       +F+ M ++NV+PD+  +V+L+SA +++G
Sbjct: 251 DLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMG 310

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            LD   W+   L+   +    A   +AL+DM  KCG+++RA  +F  +P +DV ++ +MI
Sbjct: 311 ALDQGRWIHG-LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMI 369

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G + HG G +A+ LF  M +E   P++V F  VL ACSH GLV++G + F +M+  Y+I
Sbjct: 370 TGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSI 428

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P  EHY C+VDLL R+G L  A  ++  MP+EP  S WGA+L AC+++ ++EL E    
Sbjct: 429 EPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALM 488

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            L +LEP+  G Y+LLSN+YAT  RW     +R  M  RG++KI GCSS+
Sbjct: 489 ELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSV 538



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 186/398 (46%), Gaps = 52/398 (13%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQD-----HSLVAHFI-SLCHSLATPLSYSTAVFN 94
           L L++  K    + Q+H H +  GL        +SL+  ++ + C   A  L      F+
Sbjct: 69  LYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQL------FD 122

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            + + N   +NT++ G+++    + +  +F  +      PD +T   ++  C  +   + 
Sbjct: 123 EMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKL 182

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G ++HA + +     ++ +  +L+D+Y K  E+  ARKVFD   E++ VSW  +I GYA 
Sbjct: 183 GKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAK 242

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV---------- 264
           VG+L  A  +F+ +P R  VSWN+LI G  + GD  + + LF  M   NV          
Sbjct: 243 VGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNL 302

Query: 265 -----------------------------VSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                                         S + +ID Y K G +  A  +F   P++DV
Sbjct: 303 ISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDV 362

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
             W+ +I+G+A +G  ++A+++FS M ++  +P++   VS+++ACS  G +D    + S 
Sbjct: 363 TTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSS 421

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           + + +           LVD+  + G +  A  + E MP
Sbjct: 422 MKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMP 459


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/488 (39%), Positives = 280/488 (57%), Gaps = 46/488 (9%)

Query: 128 IREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK-- 185
           +R+E    +     V+  C+H+  V++   +HA + R G+++  FV   L+    K    
Sbjct: 31  VRQEQKILESRLVSVLHGCTHINQVKQ---VHAHIFRKGLEQCCFVLAKLLRTLTKLDVP 87

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--------------- 230
                R VF ++   N   WTA+I GYA  G  +E+  +++ M                 
Sbjct: 88  MDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLK 147

Query: 231 -----------RSNVSWNALIGGL--------------VKIGDLRSARQLFDEMPERNVV 265
                      R   +   LIGG               VK G L    ++FDEM +R+V+
Sbjct: 148 ACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVI 207

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+T++I  YAKVG+M +A  LF+  P +D+VAW+A+++GYAQN +P EA+++F  M +  
Sbjct: 208 SWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAG 267

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD-LSRAHVIAALVDMNAKCGNMDR 384
           V+ DE  LV ++SAC+Q+G    +NWV     +S     S   V +AL+DM AKCG+++ 
Sbjct: 268 VKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVED 327

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A ++FE M  R+V SY SMI G ++HG    A+ LFD ML   + P+ V F  VLTACSH
Sbjct: 328 AYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSH 387

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            G+VE G + F  M+  + + PS +HYACMVDLLGR G L+ A  L+  MP+ PH   WG
Sbjct: 388 AGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWG 447

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGAC+++ + ++ ++ A+ LFELEP   G+Y+LLSNIYA+A RW DV  VR  M+ +G
Sbjct: 448 ALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKG 507

Query: 565 LRKIPGCS 572
           L+K PGCS
Sbjct: 508 LKKNPGCS 515



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 219/452 (48%), Gaps = 53/452 (11%)

Query: 14  KSCSSMLPNCSRSA-------PINFPKPSCLLSA--LTLIKKCKLQTHLHQVHSHIIKKG 64
           K+C  +LP  S          P +  +   +L +  ++++  C     + QVH+HI +KG
Sbjct: 7   KTCLFILPKTSYCQLQTQSFIPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKG 66

Query: 65  LEQDHSLVAHFISLCHSLATPLS-YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
           LEQ   ++A  +     L  P+  Y   VF ++  PN FLW  L++GY+    F+E   +
Sbjct: 67  LEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLL 126

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYG 182
           +  + R+   P  +TF  ++KACS  L V  G  +H   I   G   D++VG +LID+Y 
Sbjct: 127 YNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYV 186

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
           K   + C  +VFDEM +R+V+SWT++IV YA VG++  A  +FD +P +  V+W A++ G
Sbjct: 187 KCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTG 246

Query: 243 LVKIGDLRSARQLFDEM-----------------------------------------PE 261
             +    R A ++F+ M                                         P 
Sbjct: 247 YAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPT 306

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            NVV  + +ID YAK G +  A  +FE   +R+V ++S++I G+A +G    A+++F +M
Sbjct: 307 SNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEM 366

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
               ++P+    + +++ACS  G ++    + + +   H         A +VD+  + G 
Sbjct: 367 LKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGR 426

Query: 382 MDRAAELFETMP-NRDVVSYCSMIKGLSIHGH 412
           ++ A  L + MP N     + +++    IHG+
Sbjct: 427 LEEALNLVKMMPMNPHGGVWGALLGACRIHGN 458


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/533 (33%), Positives = 305/533 (57%), Gaps = 36/533 (6%)

Query: 43   LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
            +IK+C     L    + +IK    Q+  L+  FI+ C S    L  + +   ++  PN F
Sbjct: 786  IIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSF-NRLDLAVSFMTQMQKPNVF 844

Query: 103  LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            ++N L+KG+   S  I     +VR++R+   P  YT+  +++A +       G ++ A +
Sbjct: 845  VYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFASGF--GESLQAHI 902

Query: 163  IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
             ++G    V + T+LI  Y                               ++ G + EA+
Sbjct: 903  WKFGFGFHVQIQTTLIGFY-------------------------------SASGRIREAR 931

Query: 223  TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
             VFD MPER +V+W  ++    ++ D+ SA  L ++MPE+N  ++  +IDGY ++G++  
Sbjct: 932  KVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLEL 991

Query: 283  ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            A SLF   P +D+++W+ +I+GY++N +  EA+ +F  M  + + PDE  + +++SAC+ 
Sbjct: 992  AESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 1051

Query: 343  VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            +G L++   V  Y  ++   L   ++ +ALVDM +KCG+++RA  +F  +P +++  + S
Sbjct: 1052 LGVLEIGKEVHMYTVQNGFVLD-VYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 1110

Query: 403  MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
            +I+GL+ HG  ++A+ +F +M  E + P+ V F  V TAC+H GLVE+G R + +M + Y
Sbjct: 1111 IIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDY 1170

Query: 463  AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            +IV + EHY CMV L  + G +  A EL+ SM  EP+A  WGALL  C+++ ++E+ E+ 
Sbjct: 1171 SIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIA 1230

Query: 523  ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI-PGCSSL 574
             N+L  LEP N+G Y LL ++YA  +RW DV  +R +M+E G+ KI PG SS+
Sbjct: 1231 FNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 1283


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 306/556 (55%), Gaps = 49/556 (8%)

Query: 32  PKPSCLLSALTLI----KKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P PS  L A  L+    ++        Q+ + ++ +GL          I+  HS      
Sbjct: 4   PPPSARLHAGALLAGLARRATSPAAARQLQAQLLVRGLPLPARAAVALIASSHSP----R 59

Query: 88  YSTAVFNRIV---NPNTFLWNTLLKGYSQNSR----FIEVFTIFVRLIREEAVP--DKYT 138
           ++ AVF+  V   + N +LW   +  Y++++       E      RL+    VP  + +T
Sbjct: 60  HARAVFDSAVPAASENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFT 119

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              V++ CS + +VREG  +H  +   G+     VG +L+D+YG                
Sbjct: 120 ASSVVRCCSALRAVREGIQVHGFLFSAGLGRASHVGAALVDMYG---------------- 163

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
                          S+G + +A+ VFD MP  + V  N ++   V+ GD+ + R +FD 
Sbjct: 164 ---------------SLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDR 208

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           M ER+ +S+ T++ GY + G+   AR LFE  PDR+V +W+ +I+  +Q G   +AV++F
Sbjct: 209 MAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVF 268

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
           + M     QPD   +  LMSAC+Q+G+L +++ V   L +  ++++  HV+ +L+DM AK
Sbjct: 269 NRMRLARFQPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMN-FHVLNSLIDMYAK 327

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG++ +A  LF     +D VSY  MI  L+ HGHGR A+ +FD M  EGL PD V F  V
Sbjct: 328 CGSVSQAHLLFVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGV 387

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           L+AC+H GLV DG  +FE+M+  YAI  SP+HYACMVDL GR G ++ AY+L  +MPV+P
Sbjct: 388 LSACAHAGLVHDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKP 447

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
           HA  WGAL+ AC+ + ++E+G++ A  L  +EP N G+YVLL+N  A   +W  V  V  
Sbjct: 448 HAGVWGALINACRKHCNVEVGKVAARELIAIEPGNPGTYVLLANTLARGQQWDFVETVWQ 507

Query: 559 KMKERGLRKIPGCSSL 574
            M+ +G+ K  GCS L
Sbjct: 508 SMRGKGIEKTAGCSWL 523


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 201/628 (32%), Positives = 324/628 (51%), Gaps = 82/628 (13%)

Query: 20  LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI--- 76
           L + + S+P      SC+ S L+ I       ++  VH+ +IK G   +  +    I   
Sbjct: 13  LSSFTDSSPFAKLLDSCIKSKLSAI-------YVRYVHASVIKSGFSNEIFIQNRLIDAY 65

Query: 77  SLCHSLA------------------------TPLSY---STAVFNRIVNPNTFLWNTLLK 109
           S C SL                         T L +   + ++F  +   +   WN+++ 
Sbjct: 66  SKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVS 125

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           G++Q+ R  E    F  + +E  V ++Y+F  V+ ACS +  + +G  +H+ + +     
Sbjct: 126 GFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS 185

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           DV++G++L+D+Y K   ++ A++VFDEM +RNVVSW ++I  +   G  VEA  VF +M 
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245

Query: 230 E---------------------------------------RSNVSW-NALIGGLVKIGDL 249
           E                                       R+++   NA +    K   +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           + AR +FD MP RNV++ T+MI GYA      +AR +F    +R+VV+W+ALI+GY QNG
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH-- 367
           + +EA+ +F  +  ++V P  +   +++ AC+ +  L L      ++ +           
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEED 425

Query: 368 ---VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              V  +L+DM  KCG ++    +F  M  RD VS+ +MI G + +G+G +A+ LF  ML
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
             G  PD +    VL+AC H G VE+G  +F +M   + + P  +HY CMVDLLGR G L
Sbjct: 486 ESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFL 545

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
           + A  ++  MP++P +  WG+LL ACK++ +I LG+ VA +L E+EP N+G YVLLSN+Y
Sbjct: 546 EEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMY 605

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A   +W DV  VR  M++ G+ K PGCS
Sbjct: 606 AELGKWEDVMNVRKSMRKEGVTKQPGCS 633


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/505 (36%), Positives = 291/505 (57%), Gaps = 37/505 (7%)

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           V+ N    N ++   S++ R +E      RL  E   PD  T+  VI        + E  
Sbjct: 63  VDGNVARCNWMITNLSKDGRIMEA----RRLFDEMREPDVITWTTVISGYIKCGMIEEAR 118

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +   V      ++V   T+++  Y +  +IS A K+F+EMP +NVVSW  MI GYA  G
Sbjct: 119 RLFDRV---DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNG 175

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT-------- 268
            +  A  +F+ MPER+ VSWN ++  L + G +  AR+LFD MPER+V+S+T        
Sbjct: 176 RIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLD 235

Query: 269 ------------------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                             TMI G  + GD+  AR LF   P ++V++W+ +I+G  Q G+
Sbjct: 236 EALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGE 295

Query: 311 PDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
            +EA+KIFS M S N  +P++   VS++ ACS +  L     V   +S++    S   V+
Sbjct: 296 SEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDS-TFVV 354

Query: 370 AALVDMNAKCGNMDRAAELFE--TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           +AL++M +KCG +  A ++F+      RD+VS+  +I   + HG+G++A++ F  M   G
Sbjct: 355 SALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSG 414

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
             PD+V +  +L+ACSH GLVE+G ++F+ +    +I+   +HYAC+VDL GR G LK A
Sbjct: 415 FKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEA 474

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
           +  +  +  +P A  WGALL  C +++++++G+  A +L E+EP+NAG+Y+LLSNIYA+ 
Sbjct: 475 FGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYAST 534

Query: 548 DRWLDVCLVRSKMKERGLRKIPGCS 572
            +W +   VR KMK++GL+K PGCS
Sbjct: 535 GKWREAARVRLKMKDKGLKKQPGCS 559


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/522 (36%), Positives = 296/522 (56%), Gaps = 41/522 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ I++P+  ++NT+ + Y  +    E   +   ++R   +P+++T P V+KAC+   +
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                A+H   ++ G    VFV  +L+  Y     +  +R+ FDEM  RNVVSW +MI G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 212 YASVGDLVEAKTVFDLM-------------------PERSNVSWNALI------------ 240
           YA  GD  EA  +F  M                    +  N+ +  L+            
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180

Query: 241 ----GGLV----KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
               G LV    K GDL  AR+ F+ MP ++VVS+T+M+    K G + +AR  F+  P+
Sbjct: 181 LILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPE 240

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           R+ V+W+ +IS Y Q GQ  EA+ ++  M S    PDE  LV ++SAC ++G+L +   V
Sbjct: 241 RNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMV 300

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
             Y+ R ++      +I +L+DM AKCG +D A  LF  M NR+VVS+  +I GL++HG 
Sbjct: 301 HLYI-RDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGR 359

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
              A++ F R +    +PD + F  +L++CSH GL+E G  +FE+M++VY +    EHYA
Sbjct: 360 ALDAITFF-RSMVRNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYA 418

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           CMVDLLGR GHL+ A  L+  MP++P    WGALLGAC+++ ++++G+ V  +L ELE  
Sbjct: 419 CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGI 478

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + G +VL+SN+    ++W D+  +R  MKERG RK  G SS+
Sbjct: 479 SGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSI 520



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 189/396 (47%), Gaps = 44/396 (11%)

Query: 77  SLCHSLATP--LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134
           +L HS A+   L  S   F+ +   N   WN+++ GY+Q     E   +F  + R+  + 
Sbjct: 85  ALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLG 144

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D++T   ++ ACS   ++  G  +H  ++  G   D+ +G +L+D+Y K  ++  AR+ F
Sbjct: 145 DEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCF 204

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
           + MP ++VVSWT+M+      G +  A+  FD MPER+ VSWN +I   V+ G    A  
Sbjct: 205 EMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALD 264

Query: 255 LFDEMPER---------------------------------------NVVSYTTMIDGYA 275
           L+ +M                                          ++    +++D YA
Sbjct: 265 LYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYA 324

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G + +A  LF    +R+VV+W+ +I G A +G+  +A+  F  M  +N  PD    V+
Sbjct: 325 KCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMV-RNTSPDGITFVA 383

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           L+S+CS  G L+        +   +         A +VD+  + G++++A  L + MP +
Sbjct: 384 LLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMK 443

Query: 396 -DVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLT 429
            DVV + +++    IHG+ +    +  ++L  EG++
Sbjct: 444 PDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGIS 479


>gi|2827553|emb|CAA16561.1| predicted protein [Arabidopsis thaliana]
 gi|7269122|emb|CAB79231.1| predicted protein [Arabidopsis thaliana]
          Length = 889

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 310/558 (55%), Gaps = 37/558 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLATPL-SYSTAVFNRIVNPN 100
            +++C +     QVH+ ++         ++ H  +      +  + +Y   +       +
Sbjct: 278 FLQRCVVLEQAKQVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHD 337

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           +F W  L++  SQ+ +F E   +++ +      P  +    V++AC  + ++ +G  IHA
Sbjct: 338 SFSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHA 397

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             ++ G+   V+V T L+ LY +   I  A+K FD++ E+N VSW +++ GY   G+L E
Sbjct: 398 QALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDE 457

Query: 221 AKTVFDLMPERSNVSWN-------------------------------ALIGGLVKIGDL 249
           A+ VFD +PE+  VSWN                                LIGG V   ++
Sbjct: 458 ARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREM 517

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           + AR  FD MP++N VS+ TMI GY K+GD+ SA  LF     +D + + A+I+ Y QNG
Sbjct: 518 KLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNG 577

Query: 310 QPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           +P +A+K+F+ M  +N  +QPDE  L S++SA SQ+GN     WV+SY++   + +    
Sbjct: 578 KPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDL- 636

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           +  +L+D+  K G+  +A ++F  +  +D VSY +MI G  I+G   +A SLF  M+ + 
Sbjct: 637 LSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKK 696

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           + P+ V FT +L+A SH GLV++G++ F +M++ + + PS +HY  MVD+LGR G L+ A
Sbjct: 697 IPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDMLGRAGRLEEA 755

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
           YEL+ SMP++P+A  WGALL A  L++++E GE+  +   +LE    G    L+ IY++ 
Sbjct: 756 YELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSV 815

Query: 548 DRWLDVCLVRSKMKERGL 565
            RW D   VR  +KE+ L
Sbjct: 816 GRWDDARTVRDSIKEKKL 833


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 302/557 (54%), Gaps = 26/557 (4%)

Query: 33  KPSCLLSALTLIKKCK---LQTHLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPL 86
           KP C+  A +L+  C          Q+HS++IK G+  D  +    + L   C  + T  
Sbjct: 311 KPDCVTVA-SLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH 369

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
            Y    F      N  LWN +L  Y Q     E + IF+++  E  +P++YT+P +++ C
Sbjct: 370 EY----FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTC 425

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           + + ++  G  IH  VI+ G   +V+V + LID+Y K  E+  AR +   + E +VVSWT
Sbjct: 426 TSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWT 485

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           AMI GY       EA  +F  M  +     N+ +++ I     I  L   +Q+     + 
Sbjct: 486 AMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIH---AQS 542

Query: 263 NVVSYT-------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            +  Y+        ++  YA+ G    A   FE    +D ++W+ALISG+AQ+G  +EA+
Sbjct: 543 YISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEAL 602

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           ++FS M    V+ + F   S +SA +   N+     + + + ++  D S       L+ +
Sbjct: 603 QVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD-SETEASNVLITL 661

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            +KCG+++ A   F  MP ++VVS+ +MI G S HG+G +AVSLF+ M   GL P+ V F
Sbjct: 662 YSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTF 721

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             VL+ACSHVGLV +G  +F +M   + +VP PEHY C+VDLLGR   L  A E +  MP
Sbjct: 722 VGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMP 781

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           +EP A  W  LL AC ++ +IE+GE  A  L ELEP+++ +YVLLSN+YA + +W     
Sbjct: 782 IEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDR 841

Query: 556 VRSKMKERGLRKIPGCS 572
            R  MK+RG++K PG S
Sbjct: 842 TRQMMKDRGVKKEPGRS 858



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 146/574 (25%), Positives = 269/574 (46%), Gaps = 38/574 (6%)

Query: 18  SMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS 77
           ++L  C        P P    S L+   K +L     Q+H  I+K GL  + + V + + 
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE-TFVCNALV 255

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
             +S    L  +  +F+++   +   +N+L+ G +Q         +F ++  +   PD  
Sbjct: 256 TLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCV 315

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T   ++ AC+ V +  +G  +H+ VI+ G+  D+ +  SL+DLY K  +I  A + F   
Sbjct: 316 TVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRS 251
              NVV W  M+V Y  +G+L E+  +F       LMP +   ++ +++     +G L  
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQ--YTYPSILRTCTSLGALDL 433

Query: 252 ARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
             Q+  ++ +     NV   + +ID YAK G++ +AR + +   + DVV+W+A+I+GY Q
Sbjct: 434 GEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQ 493

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV--DSYLSRSHMDLSR 365
           +    EA+K+F +M ++ ++ D     S +SAC+ +  L+    +   SY+S    DLS 
Sbjct: 494 HDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSI 553

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            +   ALV + A+CG    A   FE +  +D +S+ ++I G +  GH  +A+ +F +M  
Sbjct: 554 GN---ALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQ 610

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
            G+  +   F   ++A ++   ++ G +   AM          E    ++ L  + G ++
Sbjct: 611 AGVEANLFTFGSAVSATANTANIKQG-KQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669

Query: 486 SAYELLNSMPVEPHASAWGALLG----------ACKLYSDIELGELVANRLFELEPQNAG 535
            A      MP E +  +W A++           A  L+ +++   L+ N +  +   +A 
Sbjct: 670 DAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSAC 728

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           S+V L N          +   RS  KE GL   P
Sbjct: 729 SHVGLVN--------EGLSYFRSMSKEHGLVPKP 754



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 218/461 (47%), Gaps = 12/461 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ II  G      +    I L +S    +  +  VF R+   ++  W  ++ G SQN
Sbjct: 133 QIHAKIIHHGFGSSPLVCNPLIDL-YSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R  E   +F ++ +   +P  Y F  V+ AC+ +   + G  +H  +++WG+  + FV 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            +L+ LY +   +  A ++F +M  R+ +S+ ++I G A  G    A  +F+ M     +
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSL 286
              V+  +L+     +G     +QL   + +     +++   +++D Y K  D+ +A   
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F      +VV W+ ++  Y Q G   E+  IF  M  + + P+++   S++  C+ +G L
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           DL   + + + +S    +  +V + L+DM AK G +D A  + + +   DVVS+ +MI G
Sbjct: 432 DLGEQIHTQVIKSGFQFN-VYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + H    +A+ LF  M ++G+  D + F+  ++AC+ +  +  G +   A   +     
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ-IHAQSYISGYSE 549

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                  +V L  R G  + AY     +  + + S W AL+
Sbjct: 550 DLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALI 589



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 235/496 (47%), Gaps = 51/496 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFIS--LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           ++H+ I K G + +  L +  I   L H     +  +  +F+ I + N   WN ++ G  
Sbjct: 31  KLHARIFKSGFDGEDVLGSRLIDIYLAHG---EVDNAIKLFDDIPSSNVSFWNKVISGLL 87

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT-AIHAAVIRWGVDEDV 171
                 +V  +F  +I E   PD+ TF  V++ACS   +  + T  IHA +I  G     
Sbjct: 88  AKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSP 147

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            V   LIDLY K   +  A+ VF+ +  ++ VSW AMI G +  G   EA  +F  M + 
Sbjct: 148 LVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKS 207

Query: 232 SNVS----WNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSA 283
           + +     +++++    KI   +   QL   + +  + S T     ++  Y++ G++ +A
Sbjct: 208 AVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAA 267

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F     RD +++++LISG AQ G  D A+++F  M    ++PD   + SL+SAC+ V
Sbjct: 268 EQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASV 327

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           G       + SY+ +  M +S   +I  +L+D+  KC +++ A E F T    +VV +  
Sbjct: 328 GAGYKGKQLHSYVIK--MGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNV 385

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVEDG 451
           M+      G+  ++  +F +M  EGL P++  +  +L  C+           H  +++ G
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG--- 508
           ++F     NVY         + ++D+  + G L +A  +L  +  E    +W A++    
Sbjct: 446 FQF-----NVYVC-------SVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYT 492

Query: 509 -------ACKLYSDIE 517
                  A KL+ ++E
Sbjct: 493 QHDLFAEALKLFQEME 508



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 205/435 (47%), Gaps = 47/435 (10%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  + + C +  S+ +   +HA + + G D +  +G+ LID+Y    E+  A K+FD++
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVS--WNALIGGLV--KIG 247
           P  NV  W  +I G  +     +   +F LM      P+ S  +    A  GG    ++ 
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVT 131

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
           +   A+ +        +V    +ID Y+K G +  A+ +FE    +D V+W A+ISG +Q
Sbjct: 132 EQIHAKIIHHGFGSSPLVC-NPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQ 190

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG+ DEA+ +F  M    V P  ++  S++SAC+++    L   +  ++ +  +  S   
Sbjct: 191 NGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLS-SETF 249

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  ALV + ++ GN+  A ++F  M  RD +SY S+I GL+  G   +A+ LF++M  + 
Sbjct: 250 VCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC 309

Query: 428 LTPDEVAFTIVLTACSHVG--------------------LVEDGWRFFEAMQNVYAIVPS 467
           + PD V    +L+AC+ VG                    L+ +G    +     + I  +
Sbjct: 310 MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEG-SLLDLYVKCFDIETA 368

Query: 468 PEHY-----------ACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALLGACKLY 513
            E++             M+   G+ G+L  +Y +   M +E   P+   + ++L  C   
Sbjct: 369 HEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSL 428

Query: 514 SDIELGELVANRLFE 528
             ++LGE +  ++ +
Sbjct: 429 GALDLGEQIHTQVIK 443



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 136/276 (49%), Gaps = 20/276 (7%)

Query: 231 RSNV-SWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           R+NV ++  L  G    G L  A++L    F    +   V  + +ID Y   G++ +A  
Sbjct: 7   RANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIK 66

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS-QVG 344
           LF+  P  +V  W+ +ISG        + + +FS M ++NV PDE    S++ ACS    
Sbjct: 67  LFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKA 126

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
              ++  + + +   H   S   V   L+D+ +K G++D A  +FE +  +D VS+ +MI
Sbjct: 127 PFQVTEQIHAKIIH-HGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            GLS +G   +A+ LF +M    + P    F+ VL+AC+ + L       F+  + ++  
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIEL-------FKLGEQLHGF 238

Query: 465 VP----SPEHYAC--MVDLLGRTGHLKSAYELLNSM 494
           +     S E + C  +V L  R G+L +A ++ + M
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/544 (35%), Positives = 308/544 (56%), Gaps = 16/544 (2%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS-LCHSLATPLSYSTAVFNRIV 97
           S L    KC    HL+Q  S +I  GL   H+    F+S L  S    L Y+  +F+R+ 
Sbjct: 10  SILCCFHKCGTFDHLNQTTSILITSGLAH-HTF---FLSDLLRSATKDLGYTLLLFDRLA 65

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P  FLWNT+++ +S +S+   V   + RL     +PD++TFPL++KA S  L       
Sbjct: 66  TPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSK-LRNENPFQ 124

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
            +A ++++G+D D FV  SL+  +     + C+R++F E  +++VVSWTA+I G    G 
Sbjct: 125 FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGR 184

Query: 218 LVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----T 268
            VEA   F  M     E   V+  +++     + D+   R +     E   V +     +
Sbjct: 185 AVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++D Y+K G    A  +F   P R++V+W ALI+GY Q  +  EA+K+F +M  + ++P
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           ++  + S ++AC+Q+G+LD   W+  Y+ RS + L+ + +  ALVDM +KCG +D A  +
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLN-SKLGTALVDMYSKCGCVDEALLV 363

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE +P +DV  + +MI GL++ G    +++LF +M+   + P+ V F  VL+AC+H GLV
Sbjct: 364 FEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLV 423

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++G   F  M   Y + P+ +HY CMVDLLGR G L+ A + + SMP+EP    WGAL  
Sbjct: 424 DEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFS 483

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            C ++   ELGE + N L +L+P ++G Y+LL+N+Y+   +W     VR  MK +G+ K 
Sbjct: 484 GCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKS 543

Query: 569 PGCS 572
           P CS
Sbjct: 544 PACS 547


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/479 (36%), Positives = 287/479 (59%), Gaps = 12/479 (2%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN+FL NT+L+ Y+   R  E   +++ + R     + +T+P V+K C+  L    G  +
Sbjct: 95  PNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVV 154

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V+R G   D+FV  +L+D+Y K  EI  A +VFD M  R+VV WTAMI  Y      
Sbjct: 155 HGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERP 214

Query: 219 VEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTM 270
           ++A  +F  M E       ++  ++   + ++GD R A  +         +       ++
Sbjct: 215 LKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSI 274

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +  YAK G++  AR +F+   +R+ ++W++++SGY QNG+P +A+ +F+ M +    P+ 
Sbjct: 275 VGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNP 334

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              + ++SACS +G+  L   + +++  S MD+    +  A++DM  KCG++D A E+F 
Sbjct: 335 VTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTT-LRNAIMDMYMKCGDLDTAVEMFN 393

Query: 391 T--MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
              +  RDV S+  +I G  +HGHG++A+ LF RM  EG+ P+++ FT +L+ACSH GL+
Sbjct: 394 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 453

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++G + F  M  + ++ P  +HYACMVD+LGR G L  A+ L+  +P  P    WGALL 
Sbjct: 454 DEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLL 512

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           AC+++ + ELGE+ AN LF+LEP++ G YVL+SNIYA +++W +V +VR  MK RGL+K
Sbjct: 513 ACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK 571


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/627 (32%), Positives = 317/627 (50%), Gaps = 112/627 (17%)

Query: 55   QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            +VHS II  G+  D +L A  + + +     L     +F++I+N   FLWN L+  Y++ 
Sbjct: 390  RVHSVIISNGISIDEALGAKLVFM-YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI 448

Query: 115  SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              F E  ++F ++ +   V + YTF  V+K  + +  V+E   +H  V++ G   +  V 
Sbjct: 449  GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 508

Query: 175  TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI------------------------- 209
             SLI  Y K   +  A  +FDE+ E +VVSW +MI                         
Sbjct: 509  NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568

Query: 210  ----------VGYASVGDL-------------------VEAKTVFDLMPERSN------- 233
                      V +A++G+L                   V + T+ D+  +  N       
Sbjct: 569  VDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 628

Query: 234  ---------VSWNALIGGLVKIGDLRSARQLFDEMPE----------------------- 261
                     VSW + I   V+ G    A  LFDEM                         
Sbjct: 629  FVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 688

Query: 262  ---RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
               R+V SY               +I+ YAK G +  AR +F   P +D+V+W+ +I GY
Sbjct: 689  DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 748

Query: 306  AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            +QN  P+EA+++F DM  K  +PD+  +  ++ AC+ +  LD    +  ++ R     S 
Sbjct: 749  SQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY-FSD 806

Query: 366  AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             HV  ALVDM AKCG +  A  LF+ +P +D++S+  MI G  +HG G +A+S F+ M  
Sbjct: 807  LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRI 866

Query: 426  EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
             G+ PDE +F+++L ACSH GL+ +GW+FF +M+N   + P  EHYAC+VDLL R G+L 
Sbjct: 867  AGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLS 926

Query: 486  SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
             AY+ + SMP++P  + WG LL  C+++ D++L E VA  +FELEP N   YV+L+N+YA
Sbjct: 927  KAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYA 986

Query: 546  TADRWLDVCLVRSKMKERGLRKIPGCS 572
             A++W +V  +R +M++RG ++ PGCS
Sbjct: 987  EAEKWEEVKKLRKRMQKRGFKQNPGCS 1013


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/459 (41%), Positives = 270/459 (58%), Gaps = 45/459 (9%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPERNVVSWTAMIVGYASV 215
           +HA +IR G+ +  +V T LI +  K      S    VF ++   N   WTAMI GYA  
Sbjct: 61  VHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQ 120

Query: 216 GDLVEAKTVFDLMPERSNV---------------------------SWNALIGGL----- 243
           G L E+   +  M  R  V                           +   LIGG      
Sbjct: 121 GLLSESTNFYTRM-RRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179

Query: 244 ---------VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
                    VK G L  AR++FDEM ER+VVS+T +I  YAK GDM SA  LF+  P +D
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKD 239

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           +VAW+A+++GYAQNG+P EA++ F  M    ++ DE  L  ++SAC+Q+G +  +NW+  
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRD 299

Query: 355 YLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
              RS    S   V+ +AL+DM +KCG+ D A ++FE M  R+V SY SMI G ++HG  
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             A+ LF  ML   + P++V F  +L+ACSH GLVE G + F  M+  + + PSP+HYAC
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLLGR G L+ A +L+ +MP+EP+   WGALLGAC+++ + ++ ++ AN LF+LEP  
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNG 479

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G+Y+LLSNIYA+A RW +V  +R  ++E+G +K PGCS
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCS 518



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 210/418 (50%), Gaps = 48/418 (11%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL-SYSTAVFNRIVNP 99
           ++++  C L + + QVH+HII+ GL Q   ++   I +   +  P+ SY   VF ++  P
Sbjct: 46  MSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYP 105

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N FLW  +++GY+      E    + R+ R+   P  +TF  + KAC   L++  G  +H
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 160 AAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           A  I   G   D++VG S+IDLY K   + CARKVFDEM ER+VVSWT +IV YA  GD+
Sbjct: 166 AQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDM 225

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------------------- 259
             A  +FD +P +  V+W A++ G  + G  + A + F +M                   
Sbjct: 226 ESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISAC 285

Query: 260 ----------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
                                 P  NVV  + +ID Y+K G    A  +FE   +R+V +
Sbjct: 286 AQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFS 345

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           +S++I GYA +G+   A+++F DM    ++P++   + ++SACS  G ++    + + + 
Sbjct: 346 YSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKME 405

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDVVSYCSMIKGLSIHGH 412
           +           A +VD+  + G ++ A +L +TM   PN  V  + +++    IHG+
Sbjct: 406 KFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV--WGALLGACRIHGN 461


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 315/604 (52%), Gaps = 68/604 (11%)

Query: 32  PKPSCLL----SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           PKP   L    S L L    K      ++HS I    +E D  L +  + + +     L 
Sbjct: 95  PKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFM-YVTCGDLR 153

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-------------- 133
               +F+++ N   FLWN L+ GY++   F E  ++F R+ RE  +              
Sbjct: 154 EGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRM-RELGIRRVESARKLFDELG 212

Query: 134 ------------------------------------PDKYTFPLVIKACSHVLSVREGTA 157
                                                D  T   V+  CS+   +  G A
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H   I+    +++ +   L+D+Y K   ++ A +VF+ M ER+VVSWT+MI GYA  G 
Sbjct: 273 LHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGL 332

Query: 218 LVEAKTVFDLMPERSNVS-----WNALIGGLVKIGDLRSARQLFDEMPERNVVS----YT 268
              +  +F  M E+  +S        ++      G L + + + + + E  + S      
Sbjct: 333 SDMSVRLFHEM-EKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSN 391

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++D YAK G M  A S+F     +D+V+W+ +I GY++N  P+EA+ +F +M   N +P
Sbjct: 392 ALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKP 450

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +   +  ++ AC+ +  L+    +  ++ R+   L R HV  ALVDM  KCG +  A  L
Sbjct: 451 NSITMACILPACASLAALERGQEIHGHILRNGFSLDR-HVANALVDMYLKCGALGLARLL 509

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+ +P +D+VS+  MI G  +HG+G +A++ F+ M + G+ PDEV+F  +L ACSH GL+
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++GW FF  M+N   I P  EHYAC+VDLL R G+L  AY+ +  MP+EP A+ WGALL 
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 629

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            C++Y D++L E VA  +FELEP+N G YVLL+NIYA A++W +V  +R ++  RGLRK 
Sbjct: 630 GCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKN 689

Query: 569 PGCS 572
           PGCS
Sbjct: 690 PGCS 693



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 198/425 (46%), Gaps = 66/425 (15%)

Query: 116 RFIEVFTI--FVRLIREEAVPDK--YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           RF E+  +   + LI +   PD    T+  V++ C+ + S+++G  IH+ +    V+ D 
Sbjct: 77  RFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDG 136

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            +G+ L+ +Y    ++   R++FD++    V  W  ++ GYA +G+  E+ ++F  M E 
Sbjct: 137 VLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE- 195

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
                       + I  + SAR+LFDE+ +R+V+S+ +MI G                  
Sbjct: 196 ------------LGIRRVESARKLFDELGDRDVISWNSMISG------------------ 225

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
                        Y  NG  ++ + +F  M    +  D   +VS+++ CS  G L L   
Sbjct: 226 -------------YVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRA 272

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           +  Y  ++        +   L+DM +K GN++ A ++FETM  R VVS+ SMI G +  G
Sbjct: 273 LHGYAIKASFG-KELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREG 331

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
               +V LF  M  EG++PD    T +L AC+  GL+E+G       ++V+  +   +  
Sbjct: 332 LSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG-------KDVHNYIKENKMQ 384

Query: 472 A------CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           +       ++D+  + G +  A+ + + M V+   S W  ++G    YS   L     N 
Sbjct: 385 SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS-WNTMIGG---YSKNSLPNEALNL 440

Query: 526 LFELE 530
             E++
Sbjct: 441 FVEMQ 445


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 298/520 (57%), Gaps = 52/520 (10%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  + + +   W  ++ GY +     E  T+F    R +A+ +  T+  ++        
Sbjct: 88  VFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF---DRNDAIKNVVTWTALVSGYVRWNR 144

Query: 152 VREGTAIHAA-----VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           + E   +  A     VI W          ++I+ Y ++  I  A  +F++MPERNVVSW 
Sbjct: 145 IEEARRLFDAMPVKNVISW---------NTMIEGYARKGWIDQALDLFEKMPERNVVSWN 195

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
            +I  +     + EA+ +F+ MPER  +SW  ++ GL K G +  AR LFD+MP RNVVS
Sbjct: 196 TVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVS 255

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRD-------------------------------V 295
           + TMI GYA+   +  A  LFE  P+R+                               V
Sbjct: 256 WNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNV 315

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           V W+A+ISG+ Q+G+ +EA+KIFS+M  + NV+P+E   VS++ ACS++  L     +  
Sbjct: 316 VTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQ 375

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE--TMPNRDVVSYCSMIKGLSIHGH 412
            +S++ +    A V++AL++M +KCG ++ A ++F+  ++ +RDVVS+  MI   + HGH
Sbjct: 376 IISKT-VYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGH 434

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
           G +A+SLFD M + G  PD V +  +L+ACSH GLV++G + FE +    +I    +H+ 
Sbjct: 435 GHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFT 494

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           C+VDL GR G L+ A++ +  + V+P AS W ALL  C ++  I+LG+L A +L E EP+
Sbjct: 495 CLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPE 554

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           NAG+Y++LSNIYA+  +W +   VR KMK++GL+K PGCS
Sbjct: 555 NAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCS 594



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 169/304 (55%), Gaps = 17/304 (5%)

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN-VS 235
           LI   GK  +I  AR+VF+EMP+R+VVSWTA+I GY   G + EAKT+FD      N V+
Sbjct: 72  LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVT 131

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           W AL+ G V+   +  AR+LFD MP +NV+S+ TMI+GYA+ G +  A  LFE  P+R+V
Sbjct: 132 WTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNV 191

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W+ +I+ + Q  + DEA ++F+ M  ++V        ++++  S+ G +D     D+ 
Sbjct: 192 VSWNTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTMVAGLSKNGRID-----DAR 242

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           L    M +        ++   A+   +D A +LFE MP R++ S+ +MI G   +G   +
Sbjct: 243 LLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLER 302

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           AV  F +M ++ +    V +T V++     G  E+  + F  MQ    + P+       V
Sbjct: 303 AVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNE---GTFV 355

Query: 476 DLLG 479
            +LG
Sbjct: 356 SVLG 359


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/518 (37%), Positives = 295/518 (56%), Gaps = 40/518 (7%)

Query: 94  NRIVNP----NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
           +R V+P    + FLWN ++K +S  +   +   +F  ++    + DK++  LV+KACS +
Sbjct: 47  SRSVSPGEIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRL 106

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--------- 200
              +EG  +H  +I+     D+F+   LI LY K   +  AR+VFD MP+R         
Sbjct: 107 GFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMI 166

Query: 201 ------------------------NVVSWTAMIVGYASVGDLVE-AKTVFDLMPERSNVS 235
                                   N+++W +MI GYA   D V  A  +FD MPE+  +S
Sbjct: 167 DGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLIS 226

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           WN++IGG VK G +  A+ LFD MP R+VV++  MIDGY K+G +  A++LF+  P RDV
Sbjct: 227 WNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDV 286

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VA+++++SG+ QN    EA+++F+ M  + ++ PDE  LV ++SA +Q+G L  +  +  
Sbjct: 287 VAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHL 346

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+      LS   +  AL+DM +KCG++  A  +FE + ++ +  + +MI GL++HG G 
Sbjct: 347 YIVEKRFLLS-GKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGE 405

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            A  +  ++    + PD + F  VL ACSH GLV++G   FE M+  + I P  +HY CM
Sbjct: 406 SAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 465

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VD+L R+G ++ A  L+  MP+EP+   W   L AC  + + E GELVA  L      N 
Sbjct: 466 VDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNP 525

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            SYVLLSN+YA+   W DV  VR+ MKE+ + K+PGCS
Sbjct: 526 SSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCS 563



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 122/266 (45%), Gaps = 18/266 (6%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACS 147
           +  +F+++ + +   +N+++ G+ QN   IE   +F  + +E  + PD+ T  +V+ A +
Sbjct: 274 AKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIA 333

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +  + +   +H  ++         +G +LID+Y K   I  A +VF+ +  +++  W A
Sbjct: 334 QLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNA 393

Query: 208 MIVGYASVGDLVEAKTVFDLM--PERSNVSWN--ALIG--------GLVKIGDLRSARQL 255
           MI G A  G     ++ FD++   ER ++  +    +G        GLVK G L      
Sbjct: 394 MIGGLAVHG---LGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMR 450

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEA 314
                E  +  Y  M+D  A+ G +  A++L E  P + + V W   ++  + + + +  
Sbjct: 451 RKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETG 510

Query: 315 VKIFSDMC-SKNVQPDEFILVSLMSA 339
             +   +       P  ++L+S M A
Sbjct: 511 ELVAKHLILQAGYNPSSYVLLSNMYA 536



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    T    +H +I++K       L    I + +S    + ++  
Sbjct: 320 PDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDM-YSKCGSIQHAMR 378

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I + +   WN ++ G + +      F + +++ R    PD  TF  V+ ACSH   
Sbjct: 379 VFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGL 438

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ + +EMP E N V W   +
Sbjct: 439 VKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFL 498


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 292/484 (60%), Gaps = 43/484 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   N   WNT+++GY++     +   +F      E +P++               
Sbjct: 151 LFDAMPVKNVISWNTMIEGYARKGWIDQALDLF------EXMPER--------------- 189

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                     V+ W          ++I  + +R+ +  A+++F+ MPER+V+SWT M+ G
Sbjct: 190 ---------NVVSW---------NTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAG 231

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
            +  G + +A+ +FD MP R+ VSWN +I G  +   L  A +LF++MPER + S+ TMI
Sbjct: 232 LSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMI 291

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDE 330
            G+ + G +  A   F    +++VV W+A+ISG+ Q+G+ +EA+KIFS+M  + NV+P+E
Sbjct: 292 TGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNE 351

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              VS++ ACS++  L     +   +S++ +    A V++AL++M +KCG ++ A ++F+
Sbjct: 352 GTFVSVLGACSKLAALCEGQQIHQIISKT-VYQEVADVVSALINMYSKCGELELARKIFD 410

Query: 391 --TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
             ++ +RDVVS+  MI   + HGHG +A+SLFD M + G  PD V +  +L+ACSH GLV
Sbjct: 411 DGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLV 470

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++G + FE +    +I    +H+ C+VDL GR G L+ A++ +  + V+P AS W ALL 
Sbjct: 471 DEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLA 530

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            C ++  I+LG+L A +L E EP+NAG+Y++LSNIYA+  +W +   VR KMK++GL+K 
Sbjct: 531 GCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQ 590

Query: 569 PGCS 572
           PGCS
Sbjct: 591 PGCS 594



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 169/304 (55%), Gaps = 17/304 (5%)

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN-VS 235
           LI   GK  +I  AR+VF+EMP+R+VVSWTA+I GY   G + EAKT+FD      N V+
Sbjct: 72  LITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVT 131

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           W AL+ G V+   +  AR+LFD MP +NV+S+ TMI+GYA+ G +  A  LFE  P+R+V
Sbjct: 132 WTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNV 191

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W+ +I+ + Q  + DEA ++F+ M  ++V        ++++  S+ G +D     D+ 
Sbjct: 192 VSWNTVITAFMQRRRVDEAQELFNRMPERDV----ISWTTMVAGLSKNGRID-----DAR 242

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           L    M +        ++   A+   +D A +LFE MP R++ S+ +MI G   +G   +
Sbjct: 243 LLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLER 302

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           AV  F +M ++ +    V +T V++     G  E+  + F  MQ    + P+       V
Sbjct: 303 AVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNE---GTFV 355

Query: 476 DLLG 479
            +LG
Sbjct: 356 SVLG 359


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 315/545 (57%), Gaps = 20/545 (3%)

Query: 42  TLIK---KCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           TLIK   + K ++   Q+H+  I+      H+  +  IS+  +L   L  +  VF  + +
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKL-LHEALLVFKTLES 67

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P    W ++++ ++  S F      FV +      PD   FP V+K+C+ ++ +R G ++
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG-- 216
           H  ++R G+D D++ G +L+++Y K   I   RKVF+ MP ++VVS+  +I GYA  G  
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMY 187

Query: 217 ----DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YT 268
                +V      DL P+   +S  +++    +  D+   +++   +  + + S     +
Sbjct: 188 EDALRMVREMGTSDLKPDAFTLS--SVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGS 245

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           +++D YAK   +  +  +F     RD ++W++L++GY QNG+ +EA+++F  M S  V+P
Sbjct: 246 SLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRP 305

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAE 387
                 S++ AC+ +  L L   +  Y+ R      R   IA ALVDM +KCGN+  A +
Sbjct: 306 GAVAFSSVIPACAHLATLHLGKQLHGYVLRG--GFGRNIFIASALVDMYSKCGNIQAARK 363

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ M   D VS+ ++I G ++HGHG +AVSLF+ M  +G+ P++VAF  VLTACSHVGL
Sbjct: 364 IFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGL 423

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V++ W +F +M  VY +    EHYA + DLLGR G L+ AY+ ++ M VEP  S W  LL
Sbjct: 424 VDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLL 483

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            +C ++ ++EL E VA ++F ++ +N G+YVL+ N+YA+  RW ++  +R +++++GLRK
Sbjct: 484 SSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRK 543

Query: 568 IPGCS 572
            P CS
Sbjct: 544 KPACS 548


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/527 (36%), Positives = 301/527 (57%), Gaps = 12/527 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           + H+ +IK G   D  +    +S+ +     +  +  VF+ +   +   +N ++ GY+++
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSM-YVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               + F +F R+ +E   P++ +F  ++  CS   ++  G A+HA  +  G+ +DV V 
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-- 232
           T+LI +Y     I  AR+VFD+M  R+VVSWT MI GYA   ++ +A  +F  M E    
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQ 361

Query: 233 --NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSL 286
              +++  +I       DL  AR++  ++       +++  T ++  YAK G +  AR +
Sbjct: 362 PDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQV 421

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+A   RDVV+WSA+I  Y +NG  +EA + F  M   NV+PD    ++L++AC  +G L
Sbjct: 422 FDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGAL 481

Query: 347 DLSNWVDSYLSRSHMDL-SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           DL   ++ Y      DL S   V  AL++MN K G+++RA  +FE M  RDVV++  MI 
Sbjct: 482 DLG--MEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIG 539

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G S+HG+ R+A+ LFDRML E   P+ V F  VL+ACS  G VE+G RFF  + +   IV
Sbjct: 540 GYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIV 599

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+ E Y CMVDLLGR G L  A  L+N MP++P++S W  LL AC++Y ++++ E  A R
Sbjct: 600 PTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAER 659

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
               EP +   YV LS++YA A  W +V  VR  M+ RG+RK  GC+
Sbjct: 660 CLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCT 706



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 232/469 (49%), Gaps = 12/469 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QV  HII+ G + +   +   I L HS+   +  +   F+ + N     WN ++ GY+Q 
Sbjct: 82  QVRDHIIQSGRQLNIYELNTLIKL-HSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQL 140

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F +F +++ E   P   TF +V+ ACS    ++ G   HA VI+ G   D  +G
Sbjct: 141 GHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIG 200

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           T+L+ +Y K   +  AR+VFD + +R+V ++  MI GYA  GD  +A  +F  M +    
Sbjct: 201 TALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFK 260

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSL 286
            + +S+ +++ G      L   + +  +     +V      T +I  Y   G +  AR +
Sbjct: 261 PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV 320

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+    RDVV+W+ +I GYA+N   ++A  +F+ M  + +QPD    + +++AC+   +L
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            L+  + S + R+    +   V  ALV M AKCG +  A ++F+ M  RDVVS+ +MI  
Sbjct: 381 SLAREIHSQVVRAGFG-TDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGA 439

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              +G G +A   F  M    + PD V +  +L AC H+G ++ G   +        +  
Sbjct: 440 YVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSH 499

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            P   A ++++  + G ++ A  +  +M V+     W  ++G   L+ +
Sbjct: 500 IPVGNA-LINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN 546



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 196/432 (45%), Gaps = 40/432 (9%)

Query: 104 WNTLLKGYSQNSRFIEVFT-------IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           W   L+   Q++R   +FT       +  RL       D  T+  + + C  +     G 
Sbjct: 22  WCGFLQQPVQSARCRSIFTGQVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGK 81

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +   +I+ G   +++   +LI L+     +  AR+ FD +  + VV+W A+I GYA +G
Sbjct: 82  QVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLG 141

Query: 217 DLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YT 268
            + EA  +F  M     E S +++  ++        L+  ++   ++ +   VS     T
Sbjct: 142 HVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGT 201

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++  Y K G M  AR +F+    RDV  ++ +I GYA++G  ++A ++F  M  +  +P
Sbjct: 202 ALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKP 261

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +    +S++  CS    L     V +    + + +    V  AL+ M   CG+++ A  +
Sbjct: 262 NRISFLSILDGCSTPEALAWGKAVHAQCMNTGL-VDDVRVATALIRMYMGCGSIEGARRV 320

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS----- 443
           F+ M  RDVVS+  MI+G + + +   A  LF  M  EG+ PD + +  ++ AC+     
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 444 ------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
                 H  +V  G+           +V +      +V +  + G +K A ++ ++M   
Sbjct: 381 SLAREIHSQVVRAGF-------GTDLLVDTA-----LVHMYAKCGAIKDARQVFDAMSRR 428

Query: 498 PHASAWGALLGA 509
              S W A++GA
Sbjct: 429 DVVS-WSAMIGA 439


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/527 (35%), Positives = 295/527 (55%), Gaps = 45/527 (8%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           A+F  I +P+   +N ++   +Q+ R  +       +  ++ V + Y+F   + AC+   
Sbjct: 102 ALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEK 161

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           + R G  +HA V +     DV++GT+L+D+Y K +    A+KVFD MPERN+VSW ++I 
Sbjct: 162 ASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLIT 221

Query: 211 GYASVGDLVEAKTVF------DLMPERSNVSW---------------------------- 236
            Y   G + EA  +F        +P+   ++                             
Sbjct: 222 CYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFR 281

Query: 237 ------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                 NAL+    K G    A+ +FD M  R+VVS T+MI GYAK  ++  A+++F   
Sbjct: 282 EDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQM 341

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
            +++VVAW+ LI+ YA N + +EA+++F  +  ++V P  +   ++++AC+ + NL L  
Sbjct: 342 VEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQ 401

Query: 351 WVDSYLSRSHMDL-----SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
               ++ +          S   V  +LVDM  K G++   A++FE M  RD VS+ +MI 
Sbjct: 402 QAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIV 461

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G + +G  + A+ LF+RML     PD V    VL+AC H GLV++G R+F++M   + I+
Sbjct: 462 GYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGII 521

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+ +HY CM+DLLGR GHLK   EL+ +MP+EP A  W +LLGAC+L+ +I++GE  A +
Sbjct: 522 PTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGK 581

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LFEL+P N+G YVLLSN+YA   +W DV  VR  MK RG+ K PGCS
Sbjct: 582 LFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCS 628



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 181/421 (42%), Gaps = 92/421 (21%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           + F+  +L+  Y +   +  AR+VFD MP RN  S+ A++   A +G   +A  +F  +P
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SY-------------------- 267
           +    S+NA++  L + G    A +    M   + V  +Y                    
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 268 -----------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                            T ++D YAK      A+ +F+A P+R++V+W++LI+ Y QNG 
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGP 228

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI- 369
            DEA+ +F  M      PDE  L S+MSAC+ +        V + + +S  D  R  ++ 
Sbjct: 229 VDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKS--DRFREDMVL 286

Query: 370 -AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG---------------------- 406
             ALVDM AKCG    A  +F+ M  R VVS  SMI G                      
Sbjct: 287 NNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNV 346

Query: 407 ------LSIHGHG---RQAVSLFDRMLSEGLTPDEVAFTIVLTAC-----------SHVG 446
                 ++ + H     +A+ LF R+  E + P    +  VL AC           +HV 
Sbjct: 347 VAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVH 406

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           ++++G+RF    ++   +  S      +VD+  +TG +    ++   M    + S W A+
Sbjct: 407 VLKEGFRFDSGPESDVFVGNS------LVDMYLKTGSISDGAKVFERMAARDNVS-WNAM 459

Query: 507 L 507
           +
Sbjct: 460 I 460



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 138/275 (50%), Gaps = 1/275 (0%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N L+    ++G L  AR++FD MP RN  SY  ++   A++G    A +LF A PD D  
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQC 113

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +++A+++  AQ+G+  +A++  + M + +   + +   S +SAC+          V + +
Sbjct: 114 SYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALV 173

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           ++S    S  ++  ALVDM AKC   + A ++F+ MP R++VS+ S+I     +G   +A
Sbjct: 174 TKSSHG-SDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEA 232

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           ++LF RM+ +G  PDEV    V++AC+ +    +G +    M               +VD
Sbjct: 233 LALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVD 292

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
           +  + G    A  + + M +    S    + G  K
Sbjct: 293 MYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAK 327



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 7/163 (4%)

Query: 54  HQVHSHIIKKGLEQDHS-----LVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLL 108
            Q H H++K+G   D        V + +   +     +S    VF R+   +   WN ++
Sbjct: 401 QQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMI 460

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGV 167
            GY+QN R  +   +F R++     PD  T   V+ AC H   V+EG     ++    G+
Sbjct: 461 VGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGI 520

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
                  T +IDL G+   +    ++ + MP E + V W +++
Sbjct: 521 IPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLL 563


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/479 (38%), Positives = 272/479 (56%), Gaps = 49/479 (10%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D +  P V+KACS +   R G  IH   ++ G+  DVFV  +L+ +Y +   +  AR +F
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
           D+M ER+VVSW+ MI  Y          T+F    +RS VSW A+I G ++  DL    +
Sbjct: 168 DKMSERDVVSWSTMIRAYI---------TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGER 218

Query: 255 LFDEMPERNVV--------------------------SY-------------TTMIDGYA 275
           LF  M E NV                           +Y             T ++D Y 
Sbjct: 219 LFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYG 278

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G++ SAR++F++  ++DV+ W+A+IS YAQ    D A ++F  M    V+P+E  +VS
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS 338

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           L+S C+  G LD+  W  +Y+ +  +++    +  AL+DM AKCG++  A  LF    +R
Sbjct: 339 LLSLCAVNGALDMGKWFHAYIDKQGVEVDVI-LKTALIDMYAKCGDISGAQRLFSEAIDR 397

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D+ ++  M+ G  +HG+G +A+ LF  M + G+ P+++ F   L ACSH GLV +G   F
Sbjct: 398 DICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLF 457

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           E M + + +VP  EHY CMVDLLGR G L  AY+++ SMPV P+ + WGA+L ACK++ +
Sbjct: 458 EKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKN 517

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             +GEL A  L  LEPQN G  VL+SNIYA A+RW DV  +R  +K+ G++K PG SS+
Sbjct: 518 SNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSI 576



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 202/417 (48%), Gaps = 34/417 (8%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISL---CHSLATP------------LSYSTAV------F 93
           ++H   +K GL  D  +V   + +   C SL +             +S+ST +      F
Sbjct: 130 EIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLF 189

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
                 +   W  ++ GY + +   E   +FVR+I E   P+  T   +I +C  V +V+
Sbjct: 190 YGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQ 249

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +HA ++R G    + + T+L+D+YGK  EI  AR +FD M  ++V++WTAMI  YA
Sbjct: 250 LGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYA 309

Query: 214 SVGDLVEAKTVFDLM-------PERSNVSWNAL--IGGLVKIGDLRSARQLFDEMPERNV 264
               +  A  +F  M        E + VS  +L  + G + +G    A  +  +  E +V
Sbjct: 310 QANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHA-YIDKQGVEVDV 368

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +  T +ID YAK GD++ A+ LF  A DRD+  W+ +++GY  +G  ++A+K+F++M + 
Sbjct: 369 ILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETL 428

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+P++   +  + ACS  G +     +   +      + +      +VD+  + G +D 
Sbjct: 429 GVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDE 488

Query: 385 AAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           A ++ E+MP   ++  + +M+    IH +          +L+  L P    + ++++
Sbjct: 489 AYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLA--LEPQNCGYKVLMS 543



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 27/223 (12%)

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
            P  A+  ++ M   +++ D FI+ S++ ACSQ+    +   +  +  ++ + +S   V+
Sbjct: 89  HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGL-VSDVFVV 147

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK-------GLS----------IHGH 412
            AL+ M ++CG++  A  LF+ M  RDVVS+ +MI+       G S          I G+
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 413 GR-----QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVP 466
            R     +   LF RM+ E + P+++    ++ +C  VG V+ G R     ++N + +  
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM-- 265

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           S      +VD+ G+ G ++SA  + +SM        W A++ A
Sbjct: 266 SLALATALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 178/533 (33%), Positives = 303/533 (56%), Gaps = 36/533 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +IK+C     L    + +IK  L QD  L+  FI+ C S    L  + +   ++  PN F
Sbjct: 34  IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKR-LDLAVSTMTQMQEPNVF 92

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           ++N L KG+   S  I    ++VR++R+   P  YT+  ++KA S   + R G ++ A +
Sbjct: 93  VYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQAHI 150

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            ++G    V + T+LID Y                               ++ G + EA+
Sbjct: 151 WKFGFGFHVKIQTTLIDFY-------------------------------SATGRIREAR 179

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
            VFD MPER +++W  ++    ++ D+ SA  L ++M E+N  +   +I+GY  +G++  
Sbjct: 180 KVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A SLF   P +D+++W+ +I GY+QN +  EA+ +F  M  + + PDE  + +++SAC+ 
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L++   V  Y  ++   L   ++ +ALVDM +KCG+++RA  +F  +P +++  + S
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLD-VYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 358

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I+GL+ HG  ++A+ +F +M  E + P+ V F  V TAC+H GLV++G R + +M + Y
Sbjct: 359 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDY 418

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
           +IV + EHY  MV L  + G +  A EL+ +M  EP+A  WGALL  C+++ ++ + E+ 
Sbjct: 419 SIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 478

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI-PGCSSL 574
            N+L  LEP N+G Y LL ++YA  +RW DV  +R +M+E G+ KI PG SS+
Sbjct: 479 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531


>gi|449446907|ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 456

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 283/451 (62%), Gaps = 2/451 (0%)

Query: 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY 181
           +++ R+ +   +  ++TF  V+ A + + ++  G  +HA VI+ G   +  V TSL+D+Y
Sbjct: 2   SLYARMQKAGILESEFTFSSVLSASARMPALYLGRQVHARVIQLGFLSNKIVLTSLMDMY 61

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIG 241
            K   I  A  +F  + ++++V+WT+MI GY+ +G + +A+ +FD M +R++ SW  ++ 
Sbjct: 62  AKCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMGQRNSFSWTTMVA 121

Query: 242 GLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
           G    G++++A+QL+D MPE+N VS   MI GY + GD+  A  +F      D    +A+
Sbjct: 122 GYANWGNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILVPDSSCCAAM 181

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ++ Y+QNG   EA++++  M  KN+  +E  LV  +SAC Q+G++++++ +   +     
Sbjct: 182 VACYSQNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGDVEMASKLIDQVDEGCC 241

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           D +   V  AL+  ++K GN++RA E F  M +RDVV+Y ++I  L+ HG  ++A+ LF 
Sbjct: 242 DRT-LFVSNALIHKHSKFGNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFS 300

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
           +M  EG+ P+++ F  VL AC+H GL+E G ++FE M+  + I P   HYACMVDLLGR 
Sbjct: 301 KMEEEGIKPNQICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRA 360

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541
           G ++ AY ++     E  A  WG+LLGACK++ ++E+GE+ A  LFE+EP+N G+YVLL+
Sbjct: 361 GEVEMAYNVIKG-AREIDAKTWGSLLGACKIHGNLEVGEIAAKHLFEMEPENTGNYVLLA 419

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N YA    W +   VR+ M ERG++K PG S
Sbjct: 420 NTYAQMKEWNEAEKVRNVMVERGIKKFPGYS 450



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 151/331 (45%), Gaps = 51/331 (15%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   N+F W T++ GY+          ++      +A+P+K     +         
Sbjct: 104 LFDKMGQRNSFSWTTMVAGYANWGNMKAAKQLY------DAMPEKNPVSQL--------- 148

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                                   ++I  YG+  +++ A ++F E+   +     AM+  
Sbjct: 149 ------------------------AMIAGYGRCGDVAEAERIFGEILVPDSSCCAAMVAC 184

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWN--ALIGGL---VKIGDLRSARQLFDEMPE----R 262
           Y+  G   EA  ++  M E+ N+  N  AL+G L   V++GD+  A +L D++ E    R
Sbjct: 185 YSQNGYGKEAIEMYKQMKEK-NLGTNEVALVGALSACVQLGDVEMASKLIDQVDEGCCDR 243

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
            +     +I  ++K G++  A+  F    DRDVV +S LI   A +G+  EA+ +FS M 
Sbjct: 244 TLFVSNALIHKHSKFGNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKME 303

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
            + ++P++   + +++AC+  G ++    + +       ++  + H  A +VD+  + G 
Sbjct: 304 EEGIKPNQICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHY-ACMVDLLGRAGE 362

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
           ++ A  + +     D  ++ S++    IHG+
Sbjct: 363 VEMAYNVIKGAREIDAKTWGSLLGACKIHGN 393



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 89/194 (45%), Gaps = 8/194 (4%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           HS    +  +   FNR+ + +   ++TL+   + + +  E   +F ++  E   P++  F
Sbjct: 255 HSKFGNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLFSKMEEEGIKPNQICF 314

Query: 140 PLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
             V+ AC+H   + +G      + + +G++        ++DL G+  E+  A  V     
Sbjct: 315 IGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGRAGEVEMAYNVIKGAR 374

Query: 199 ERNVVSWTAM-----IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR 253
           E +  +W ++     I G   VG++  AK +F++ PE +  ++  L     ++ +   A 
Sbjct: 375 EIDAKTWGSLLGACKIHGNLEVGEIA-AKHLFEMEPENTG-NYVLLANTYAQMKEWNEAE 432

Query: 254 QLFDEMPERNVVSY 267
           ++ + M ER +  +
Sbjct: 433 KVRNVMVERGIKKF 446


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 190/459 (41%), Positives = 270/459 (58%), Gaps = 45/459 (9%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPERNVVSWTAMIVGYASV 215
           +HA +IR G+ +  +V T LI +  K      S    VF ++   N   WTAMI GYA  
Sbjct: 61  VHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQ 120

Query: 216 GDLVEAKTVFDLMPERSNV---------------------------SWNALIGGL----- 243
           G L E+   +  M  R  V                           +   LIGG      
Sbjct: 121 GLLSESTNFYTRM-RRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179

Query: 244 ---------VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
                    VK G L  AR++FDEM ER+VVS+T +I  YAK GDM SA  LF+  P +D
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKD 239

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           +VAW+A+++GYAQNG+P EA++ F  M    ++ DE  L  ++SAC+Q+G +  +NW+  
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRD 299

Query: 355 YLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
              RS    S   V+ +AL+DM +KCG+ D A ++FE M  R+V SY SMI G ++HG  
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             A+ LF  ML   + P++V F  +L+ACSH GLVE G + F  M+  + + PSP+HYAC
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLLGR G L+ A +L+ +MP+EP+   WGALLGAC+++ + ++ ++ AN LF+LEP  
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNG 479

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G+Y+LLSNIYA+A RW +V  +R  ++E+G +K PGCS
Sbjct: 480 IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCS 518



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/418 (30%), Positives = 210/418 (50%), Gaps = 48/418 (11%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL-SYSTAVFNRIVNP 99
           ++++  C L + + QVH+HII+ GL Q   ++   I +   +  P+ SY   VF ++  P
Sbjct: 46  MSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYP 105

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N FLW  +++GY+      E    + R+ R+   P  +TF  + KAC   L++  G  +H
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 160 AAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           A  I   G   D++VG S+IDLY K   + CARKVFDEM ER+VVSWT +IV YA  GD+
Sbjct: 166 AQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDM 225

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------------------- 259
             A  +FD +P +  V+W A++ G  + G  + A + F +M                   
Sbjct: 226 ESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISAC 285

Query: 260 ----------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
                                 P  NVV  + +ID Y+K G    A  +FE   +R+V +
Sbjct: 286 AQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFS 345

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           +S++I GYA +G+   A+++F DM    ++P++   + ++SACS  G ++    + + + 
Sbjct: 346 YSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKME 405

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDVVSYCSMIKGLSIHGH 412
           +           A +VD+  + G ++ A +L +TM   PN  V  + +++    IHG+
Sbjct: 406 KFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGV--WGALLGACRIHGN 461


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 178/533 (33%), Positives = 303/533 (56%), Gaps = 36/533 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +IK+C     L    + +IK  L QD  L+  FI+ C S    L  + +   ++  PN F
Sbjct: 34  IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKC-LDLAVSTMTQMQEPNVF 92

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           ++N L KG+   S  I    ++VR++R+   P  YT+  ++KA S   + R G ++ A +
Sbjct: 93  VYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQAHI 150

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            ++G    V + T+LID Y                               ++ G + EA+
Sbjct: 151 WKFGFGFHVKIQTTLIDFY-------------------------------SATGGIREAR 179

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
            VFD MPER +++W  ++    ++ D+ SA  L ++M E+N  +   +I+GY  +G++  
Sbjct: 180 KVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A SLF   P +D+++W+ +I GY+QN +  EA+ +F  M  + + PDE  + +++SAC+ 
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L++   V  Y  ++   L   ++ +ALVDM +KCG+++RA  +F  +P +++  + S
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLD-VYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 358

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I+GL+ HG  ++A+ +F +M  E + P+ V F  V TAC+H GLV++G R + +M + Y
Sbjct: 359 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDY 418

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
           +IV + EHY  MV L  + G +  A EL+ +M  EP+A  WGALL  C+++ ++ + E+ 
Sbjct: 419 SIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 478

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI-PGCSSL 574
            N+L  LEP N+G Y LL ++YA  +RW DV  +R +M+E G+ KI PG SS+
Sbjct: 479 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 178/474 (37%), Positives = 283/474 (59%), Gaps = 9/474 (1%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   + +LL+GY ++    +   +F ++     V    ++ +++        V E   +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHV----SYTVLLGGLLDAGRVNEARRL 165

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              +     D DV   T+++  Y +   I+ AR +FDEMP+RNVVSWTAMI GYA  G++
Sbjct: 166 FDEM----PDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             A+ +F++MPER+ VSW A++ G ++ G +  A +LF+ MPE  V +   M+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + +A+++FE   +RD   WSA+I  Y QN    EA+  F +M  + V+P+   ++S+++
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            C+ +  LD    V + + R   D+     ++AL+ M  KCGN+D+A  +F T   +D+V
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMD-VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + SMI G + HG G QA+ +F  M   G++PD + +   LTACS+ G V++G   F +M
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
               +I P  EHY+CMVDLLGR+G ++ A++L+ +MPVEP A  WGAL+GAC+++ + E+
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E+ A +L ELEP NAG YVLLS+IY +  RW D   +R  +  R L K PGCS
Sbjct: 521 AEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCS 574



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 149/331 (45%), Gaps = 63/331 (19%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL--- 243
           I  AR  F+ MP R   S+ A++ GY        A  +F  MP R   S+NALI GL   
Sbjct: 33  IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 244 ------------------------------VKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                         V+ G L  A +LF +MPERN VSYT ++ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
               G +  AR LF+  PDRDVVAW+A++SGY Q G+  EA  +F +M  +NV       
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSW 208

Query: 334 VSLMSACSQVGNLDLS-------------NWVD---SYLSRSHMDLSR-------AHVIA 370
            +++S  +Q G ++L+             +W      Y+   H++ +         H +A
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268

Query: 371 ALVDMNAKCGN---MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           A   M    G    +D A  +FE M  RD  ++ +MIK    +    +A+S F  ML  G
Sbjct: 269 ACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG 328

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           + P+  +   +LT C+ + +++ G     AM
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 170/410 (41%), Gaps = 82/410 (20%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  ++ + A+F+ +   N   W  ++ GY+QN        +F      E +P++      
Sbjct: 187 AGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLF------EVMPERNE---- 236

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                               + W         T+++  Y +   +  A ++F+ MPE  V
Sbjct: 237 --------------------VSW---------TAMLVGYIQAGHVEDAAELFNAMPEHPV 267

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
            +  AM+VG+   G +  AKTVF+ M ER + +W+A+I    +   L  A   F EM  R
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 263 ---------------------------------------NVVSYTTMIDGYAKVGDMTSA 283
                                                  +V + + +I  Y K G++  A
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F     +D+V W+++I+GYAQ+G  ++A+ IF DM    + PD    +  ++ACS  
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
           G +     + + ++ +      A   + +VD+  + G ++ A +L + MP   D V + +
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC-SHVGLVEDG 451
           ++    +H +   A     ++L   L P      ++L+   + VG  ED 
Sbjct: 508 LMGACRMHRNAEIAEVAAKKLLE--LEPGNAGPYVLLSHIYTSVGRWEDA 555



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 154/335 (45%), Gaps = 30/335 (8%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA I  L + G++  AR  F+ MP R   SY  ++ GY +     +A  LF   P RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 297 AWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL-DLSNWVD 353
           +++ALISG +   Q  PD A    + + S    P      SL+    + G L D      
Sbjct: 81  SYNALISGLSLRRQTLPDAA----AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
               R+H  +S   ++  L+D     G ++ A  LF+ MP+RDVV++ +M+ G    G  
Sbjct: 137 QMPERNH--VSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRI 190

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A +LFD M    +    V++T +++  +  G V    + FE M       P     + 
Sbjct: 191 TEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSW 239

Query: 474 MVDLLG--RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
              L+G  + GH++ A EL N+MP  P A+    ++G  +    ++  + V  ++ E   
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQ-RGMVDAAKTVFEKMRE--- 295

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           ++ G++  +   Y   +  ++      +M  RG+R
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVR 330



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 37/314 (11%)

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
            A I   A  G++  A+  F+ MP R+  S+NAL+ G  +     +A  LF  MP R++ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 266 SYTTMIDGYA----KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           SY  +I G +     + D  +A +     P   VV++++L+ GY ++G   +A+++F  M
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPP--SVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC-- 379
             +N      +L  L+ A    G ++ +        R   ++    V+A    ++  C  
Sbjct: 139 PERNHVSYTVLLGGLLDA----GRVNEAR-------RLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A  LF+ MP R+VVS+ +MI G + +G    A  LF+ M       +EV++T +L
Sbjct: 188 GRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAML 243

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YAC--MVDLLGRTGHLKSAYELLNSMP 495
                 G VED    F AM         PEH   AC  M+   G+ G + +A  +   M 
Sbjct: 244 VGYIQAGHVEDAAELFNAM---------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM- 293

Query: 496 VEPHASAWGALLGA 509
            E     W A++ A
Sbjct: 294 RERDDGTWSAMIKA 307



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 139/290 (47%), Gaps = 19/290 (6%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  VF ++   +   W+ ++K Y QN   +E  + F  ++     P+  +   ++  C+ 
Sbjct: 286 AKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G  +HAA++R   D DVF  ++LI +Y K   +  A++VF     +++V W +M
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNAL--IGGLVK---IGDLRSARQLFDEMPERN 263
           I GYA  G   +A  +F  M   + +S + +  IG L      G ++  R++F+ M   +
Sbjct: 406 ITGYAQHGLGEQALGIFHDM-RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 264 VVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG--YAQNGQPDE-A 314
            +      Y+ M+D   + G +  A  L +  P + D V W AL+      +N +  E A
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVA 524

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
            K   ++   N  P  ++L+S +   + VG  + ++ +  ++S  +++ S
Sbjct: 525 AKKLLELEPGNAGP--YVLLSHIY--TSVGRWEDASKMRKFISSRNLNKS 570


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 185/532 (34%), Positives = 304/532 (57%), Gaps = 37/532 (6%)

Query: 45  KKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPNTFL 103
           ++C+   H+ Q+H+ +  +G   D S +   + +   ++   ++++  VF++I  P+ F+
Sbjct: 16  RRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFM 75

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAV----PDKYTFPLVIKACSHVLSVREGTAIH 159
           +NTL++G +  +   +  +++ R++R        PDK TFP V++AC+ + +   G  +H
Sbjct: 76  YNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVH 135

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A V++ G + D FV  +LI ++                               AS G+L 
Sbjct: 136 AHVVKAGCESDAFVKNALIGMH-------------------------------ASCGNLG 164

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A  +FD       V+W+A+I G  + GD+ +AR LFDE P +++VS+  MI  YAK GD
Sbjct: 165 IAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGD 224

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M  AR LF+  P+RDVV+W+ +ISGY + G    A+++F  M     +PD   ++SL+SA
Sbjct: 225 MALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSA 284

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVV 398
           C+  G+LD+   + S LS          V+  AL+DM AKCG+M  A E+F +M ++DV 
Sbjct: 285 CADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVS 344

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ S++ GL++HGH  +++ +F++ML   + PDE+ F  VL ACSH G+V+ G  FF  M
Sbjct: 345 TWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLM 404

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           Q+ Y + P+ +HY CMVD+LGR G LK A+E +++M  EP++  W  LL AC+++ +IEL
Sbjct: 405 QHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIEL 464

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
            +    +L +     +G YVLLSNIYA+   W     +R  M + G+ K  G
Sbjct: 465 AKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAG 516


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 307/566 (54%), Gaps = 50/566 (8%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA--VFNRIVNPNTFLWNTLLKG 110
           + ++H+ +++  +  D S ++  I   H   +P S   A  VFN+I  P   +WN ++ G
Sbjct: 30  IKELHAQLVRAQMHIDPSSISEVIK--HYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHG 87

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            S++ R  +    +  +  +       TF  + K+C+ V  VR+G  +    ++ G +  
Sbjct: 88  LSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESY 147

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           +FV  +LI +Y    E++ A+KVFD M ER+VVSW ++I GY         K V DL  E
Sbjct: 148 LFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRF---KKVLDLFRE 204

Query: 231 RSNVS--------------------W----------------------NALIGGLVKIGD 248
              ++                    W                      N LI    + G 
Sbjct: 205 MQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGM 264

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           +  A ++F +M E+N+VS+  MI GYAKVG++ +A+ LF   P RDV++W+++I GY+  
Sbjct: 265 IDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLA 324

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
            Q  EAVK+F +M    V+PDE  + + +SAC+ +G+LD    V  Y+ R H   S   V
Sbjct: 325 KQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYI-RKHDIKSDVFV 383

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             +L+DM  KCG +++A ++F  M  RD VS+ S+I GL+++G    A+++FD+ML EG+
Sbjct: 384 GNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGI 443

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P    F  VL AC+HVGLV+ G   F++M+N Y + P  +HY C+VDLL R+G+L  AY
Sbjct: 444 CPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAY 503

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
             +  MP+ P    W  LL ACKL+ ++ L E+V+ +L  L+P N G+YVL S+ YA +D
Sbjct: 504 NFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSD 563

Query: 549 RWLDVCLVRSKMKERGLRKIPGCSSL 574
           RW DV  +R  M+   L+K    SS+
Sbjct: 564 RWDDVIKIRKLMEVTNLQKPCAYSSI 589



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 190/418 (45%), Gaps = 44/418 (10%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           L+ + L K C   + + Q   V  H +K G E  +  V++ +   +     L+ +  VF+
Sbjct: 114 LTFIFLFKSCARVSDVRQGQMVRVHSMKLGFES-YLFVSNALIHMYVCFGELAMAQKVFD 172

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            ++  +   WN+++ GY Q +RF +V  +F  +       D  T    I A   +     
Sbjct: 173 GMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEM 232

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +   +   GV  D+++G +LID+YG+R  I  A +VF +M E+N+VSW AMI+GYA 
Sbjct: 233 GDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAK 292

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PER------ 262
           VG+LV AK +F+ MP R  +SW ++I G         A +LF EM      P+       
Sbjct: 293 VGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATA 352

Query: 263 ---------------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                                      +V    ++ID Y K G +  A  +F     RD 
Sbjct: 353 LSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDS 412

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W+++ISG A NG  + A+ +F  M  + + P     V ++ AC+ VG +D        
Sbjct: 413 VSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKS 472

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH 412
           +  ++           +VD+  + G +D A    + MP   DVV +  ++    +HG+
Sbjct: 473 MENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGN 530


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 178/474 (37%), Positives = 283/474 (59%), Gaps = 9/474 (1%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   + +LL+GY ++    +     +RL ++    +  ++ +++        V E   +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADA----IRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRL 165

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              +     D DV   T+++  Y +   I+ AR +FDEMP+RNVVSWTAMI GYA  G++
Sbjct: 166 FDEM----PDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             A+ +F++MPER+ VSW A++ G ++ G +  A +LF+ MPE  V +   M+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + +A+++FE   +RD   WSA+I  Y QN    EA+  F +M  + V+P+   ++S+++
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            C+ +  LD    V + + R   D+     ++AL+ M  KCGN+D+A  +F T   +D+V
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMD-VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + SMI G + HG G QA+ +F  M   G++PD + +   LTACS+ G V++G   F +M
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
               +I P  EHY+CMVDLLGR+G ++ A++L+ +MPVEP A  WGAL+GAC+++ + E+
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E  A +L ELEP NAG YVLLS+IY +  RW D   +R  +  R L K PGCS
Sbjct: 521 AEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCS 574



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 149/331 (45%), Gaps = 63/331 (19%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL--- 243
           I  AR  F+ MP R   S+ A++ GY        A  +F  MP R   S+NALI GL   
Sbjct: 33  IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 244 ------------------------------VKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                         V+ G L  A +LF +MPERN VSYT ++ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
               G +  AR LF+  PDRDVVAW+A++SGY Q G+  EA  +F +M  +NV       
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS----W 208

Query: 334 VSLMSACSQVGNLDLS-------------NWVD---SYLSRSHMDLSR-------AHVIA 370
            +++S  +Q G ++L+             +W      Y+   H++ +         H +A
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268

Query: 371 ALVDMNAKCGN---MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           A   M    G    +D A  +FE M  RD  ++ +MIK    +    +A+S F  ML  G
Sbjct: 269 ACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG 328

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           + P+  +   +LT C+ + +++ G     AM
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 170/409 (41%), Gaps = 82/409 (20%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  ++ + A+F+ +   N   W  ++ GY+QN        +F      E +P++      
Sbjct: 187 AGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLF------EVMPERNE---- 236

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                               + W         T+++  Y +   +  A ++F+ MPE  V
Sbjct: 237 --------------------VSW---------TAMLVGYIQAGHVEDAAELFNAMPEHPV 267

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
            +  AM+VG+   G +  AKTVF+ M ER + +W+A+I    +   L  A   F EM  R
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 263 ---------------------------------------NVVSYTTMIDGYAKVGDMTSA 283
                                                  +V + + +I  Y K G++  A
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F     +D+V W+++I+GYAQ+G  ++A+ IF DM    + PD    +  ++ACS  
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
           G +     + + ++ +      A   + +VD+  + G ++ A +L + MP   D V + +
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC-SHVGLVED 450
           ++    +H +   A     ++L   L P      ++L+   + VG  ED
Sbjct: 508 LMGACRMHRNAEIAEFAAKKLLE--LEPGNAGPYVLLSHIYTSVGRWED 554



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 26/277 (9%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA I  L + G++  AR  F+ MP R   SY  ++ GY +     +A  LF   P RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 297 AWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL-DLSNWVD 353
           +++ALISG +   Q  PD A    + + S    P      SL+    + G L D      
Sbjct: 81  SYNALISGLSLRRQTLPDAA----AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
               R+H  +S   ++  L+D     G ++ A  LF+ MP+RDVV++ +M+ G    G  
Sbjct: 137 QMPERNH--VSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRI 190

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A +LFD M    +    V++T +++  +  G V    + FE M       P     + 
Sbjct: 191 TEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSW 239

Query: 474 MVDLLG--RTGHLKSAYELLNSMPVEPHASAWGALLG 508
              L+G  + GH++ A EL N+MP  P A+    ++G
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 37/314 (11%)

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
            A I   A  G++  A+  F+ MP R+  S+NAL+ G  +     +A  LF  MP R++ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 266 SYTTMIDGYA----KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           SY  +I G +     + D  +A +     P   VV++++L+ GY ++G   +A+++F  M
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPP--SVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC-- 379
             +N      +L  L+ A    G ++ +        R   ++    V+A    ++  C  
Sbjct: 139 PERNHVSYTVLLGGLLDA----GRVNEAR-------RLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A  LF+ MP R+VVS+ +MI G + +G    A  LF+ M       +EV++T +L
Sbjct: 188 GRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAML 243

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YAC--MVDLLGRTGHLKSAYELLNSMP 495
                 G VED    F AM         PEH   AC  M+   G+ G + +A  +   M 
Sbjct: 244 VGYIQAGHVEDAAELFNAM---------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM- 293

Query: 496 VEPHASAWGALLGA 509
            E     W A++ A
Sbjct: 294 CERDDGTWSAMIKA 307



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 139/290 (47%), Gaps = 19/290 (6%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  VF ++   +   W+ ++K Y QN   +E  + F  ++     P+  +   ++  C+ 
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAA 345

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G  +HAA++R   D DVF  ++LI +Y K   +  A++VF     +++V W +M
Sbjct: 346 LAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM 405

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNAL--IGGLVK---IGDLRSARQLFDEMPERN 263
           I GYA  G   +A  +F  M   + +S + +  IG L      G ++  R++F+ M   +
Sbjct: 406 ITGYAQHGLGEQALGIFHDM-RLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 264 VVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG--YAQNGQPDE-A 314
            +      Y+ M+D   + G +  A  L +  P + D V W AL+      +N +  E A
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFA 524

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
            K   ++   N  P  ++L+S +   + VG  + ++ +  ++S  +++ S
Sbjct: 525 AKKLLELEPGNAGP--YVLLSHIY--TSVGRWEDASKMRKFISSRNLNKS 570


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 184/536 (34%), Positives = 289/536 (53%), Gaps = 53/536 (9%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  + ++F  +   +   WN+++ G++Q+ R  E    F  + +E  V ++YTF   + A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS +  +  G  IH+ + +     DV++G++L+D+Y K   ++ A++VFDEM +RNVVSW
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSW----------------------------- 236
            ++I  Y   G  VEA  VF +M E    SW                             
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLE----SWVEPDEVTLASVISACASLSAIKVGQEVHA 277

Query: 237 ---------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
                          NA +    K   ++ AR +FD MP RNV++ T+M+ GYA      
Sbjct: 278 RVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTK 337

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           +AR +F    +R+VV+W+ALI+GY QNG+ +EA+ +F  +  ++V P  +   +++ AC+
Sbjct: 338 AARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACA 397

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAH-----VIAALVDMNAKCGNMDRAAELFETMPNRD 396
            + +L L      ++ +              V  +L+DM  KCG ++    +F  M  RD
Sbjct: 398 DLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERD 457

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
            VS+ +MI G + +G+G +A+ LF  ML  G  PD +    VL+AC H G VE+G  +F 
Sbjct: 458 CVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFS 517

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           +M   + + P  +HY CMVDLLGR G L+ A  ++  MPV+P +  WG+LL ACK++ +I
Sbjct: 518 SMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNI 577

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            LG+ VA +LFE+E  N+G YVLLSN+YA   +W D   VR  M++ G+ K PGCS
Sbjct: 578 TLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCS 633



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 209/453 (46%), Gaps = 93/453 (20%)

Query: 139 FPLVIKACSHV-LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           F  ++ +C  + LS  +   +HA+VI+ G   +VF+   LID Y K   +   R++FD+M
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
           P+RNV +W +++ G   +G L EA ++F  MPER   +WN+++ G  +      A   F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 258 EMPERNVV--SYT-------------------------------------TMIDGYAKVG 278
            M +   V   YT                                      ++D Y+K G
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           ++  A+ +F+   DR+VV+W++LI+ Y QNG   EA+K+F  M    V+PDE  L S++S
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFETMP--- 393
           AC+ +  + +   V + + +  MD  R  +I   A VDM AKC  +  A  +F++MP   
Sbjct: 262 ACASLSAIKVGQEVHARVVK--MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319

Query: 394 ----------------------------NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
                                        R+VVS+ ++I G + +G   +A+SLF  +  
Sbjct: 320 VIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379

Query: 426 EGLTPDEVAFTIVLTAC-----------SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           E + P    F  +L AC           +HV +++ G++F    ++   +  S      +
Sbjct: 380 ESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS------L 433

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +D+  + G ++  Y +   M +E    +W A++
Sbjct: 434 IDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMI 465



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 157/377 (41%), Gaps = 69/377 (18%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +++A     +  +F ++   N   WN L+ GY+QN    E  ++F  L RE   P  YTF
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTF 389

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGV------DEDVFVGTSLIDLYGKRKEISCARKV 193
             ++KAC+ +  +  G   H  V++ G       ++D+FVG SLID+Y K   +     V
Sbjct: 390 ANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDL 249
           F +M ER+ VSW AMI+G+A  G   EA  +F  M +      +++   ++      G +
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFV 509

Query: 250 RSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
              R  F  M     V+     YT M+D   + G +  A+S+ E  P             
Sbjct: 510 EEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMP------------- 556

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
                                VQPD  I  SL++AC    N+ L  +V   L       S
Sbjct: 557 ---------------------VQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNS 595

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY--CSMIKGLSIHGHG--------- 413
             +V+  L +M A+ G    A  + + M    V     CS IK   I GH          
Sbjct: 596 GPYVL--LSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIK---IPGHAHVFMVKDKS 650

Query: 414 ----RQAVSLFDRMLSE 426
               +Q  SL D +++E
Sbjct: 651 HPRKKQIHSLLDILIAE 667


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 304/544 (55%), Gaps = 16/544 (2%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT--PLSYSTAVFNRIVNPNT 101
           +  CK  +HL Q+H   IK       +L+   I L  S ++   L Y  ++     +   
Sbjct: 13  LNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 72

Query: 102 F---LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           F   L N +++  S+NS  +        ++     PD +T PLV+KA + +  +REG  I
Sbjct: 73  FCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQI 132

Query: 159 HAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           HA  I+ G V  +V+V  +L+ LY     I   +KVFDE P R++VSWT +I  +   G 
Sbjct: 133 HARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGL 192

Query: 218 LVEAKTVF----DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP-----ERNVVSYT 268
              A   F    DL       +   ++     +GDL   +++   +      + +V    
Sbjct: 193 YSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGN 252

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++D Y K  D+ SA  +F+  P ++VV W+A+ISG A  G+  EA+  F  M  K V+P
Sbjct: 253 ALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKP 312

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           DE  LV ++++C+ +G L++  WV +Y+ R+H+ L+   V  AL+DM AKCG++D A  +
Sbjct: 313 DEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHI-LADKFVGNALLDMYAKCGSIDEAFRV 371

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE+M  RDV SY +MI GL++HG    A  +F  M   G+ P+EV F  +L ACSH GLV
Sbjct: 372 FESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLV 431

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
            +G ++F  M + Y + P  EHY CM+DLLGR G +K A E+++ M + P   A GALLG
Sbjct: 432 AEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLG 491

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           AC+++ ++++GE V  +L EL+P   G+Y+L++N+Y++  RW D   +R  MK + +RK 
Sbjct: 492 ACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKT 551

Query: 569 PGCS 572
           PGCS
Sbjct: 552 PGCS 555


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 285/484 (58%), Gaps = 12/484 (2%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN   W+ ++ G++QN    E   +  R+      P+  T   V+ AC+ + ++  G  I
Sbjct: 9   PNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEI 68

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V R G   + FV   L+D+Y +  ++  A K+F     +NVVS+  MIVGY   G++
Sbjct: 69  HGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNV 128

Query: 219 VEAKTVFDLMP--ERSNVSWNALIGG----LVKIGDLRSARQLFDEMPERNVVSYTTMID 272
            +AK +FD M    +  +SWN++I G    L+K  DL++A+  FD + ER+  ++  +I 
Sbjct: 129 EKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLIS 188

Query: 273 GYAKVGDMTSARSLFEAAP----DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           GYA    + + ++L +       + +V  W+ +ISG+ +NG  + A+++F++M + +++P
Sbjct: 189 GYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRP 248

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D + +  ++ AC+++  +     V ++  R   +L   H+ AALVDM AKCG++  A ++
Sbjct: 249 DIYTVGIILPACARLATIARGKQVHAHSIRQGYELD-VHIGAALVDMYAKCGSIKHAMQV 307

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           +  + N ++VS  +M+   ++HGHG + ++LF  ML  G  PD V F  VL++C H G V
Sbjct: 308 YNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAV 367

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           E G  FF+ M   Y + PS +HY C+VDLL R G L  AYEL+  +P +P +  WGALLG
Sbjct: 368 ETGHEFFDLM-TYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLG 426

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            C ++ ++ELGE+ A  L ELEP N G+YVLL+N+YA A RW D+   R  +K+RG+ K 
Sbjct: 427 GCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKS 486

Query: 569 PGCS 572
           PGCS
Sbjct: 487 PGCS 490



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/455 (20%), Positives = 179/455 (39%), Gaps = 112/455 (24%)

Query: 6   EPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGL 65
           EPN     ++ +S+LP C+R   +N  K                     ++H ++ + G 
Sbjct: 43  EPNA----RTLASVLPACARLQNLNLGK---------------------EIHGYVTRHGF 77

Query: 66  EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFV 125
             +  +V   + +    A  +  +  +F+     N   +NT++ GY +N    +   +F 
Sbjct: 78  MSNPFVVNGLVDVYRRCA-DMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFD 136

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG--- 182
           ++             LV K                  I W          S+I  Y    
Sbjct: 137 QM------------ELVGK----------------DTISW---------NSMISGYADNL 159

Query: 183 -KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWN 237
            K +++  A+  FD + ER+  +W  +I GYA    L   + +   M     E +  +WN
Sbjct: 160 LKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWN 219

Query: 238 ALIGGLVKIGDLRSARQLFDEMP------------------------------------- 260
            +I G V+ G    A +LF EM                                      
Sbjct: 220 GIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQ 279

Query: 261 --ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             E +V     ++D YAK G +  A  ++    + ++V+ +A+++ YA +G  DE + +F
Sbjct: 280 GYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALF 339

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M     +PD    +S++S+C   G ++  +     ++  ++  S  H    +VD+ ++
Sbjct: 340 RNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHY-TCIVDLLSR 398

Query: 379 CGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
            G +D A EL + +P + D V + +++ G  I G+
Sbjct: 399 AGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGN 433



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 83/369 (22%)

Query: 196 EMPERNVVSWTAMIVGYASVGDLVE----------------AKTVFDLMP---ERSNVSW 236
           E  + N+VSW+A+I G+A  G   E                A+T+  ++P      N++ 
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 237 NALIGGLV--------------------KIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
              I G V                    +  D+ SA ++F     +NVVSY TMI GY +
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 277 VGDMTSARSLFEAAP--DRDVVAWSALISGYAQN---GQPDEAVKIFSDMCSKNVQPDEF 331
            G++  A+ LF+      +D ++W+++ISGYA N    +  +A ++  D  ++       
Sbjct: 125 NGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWN 184

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
           +L+S  + C+Q+ N+                    ++I  +              + FE 
Sbjct: 185 VLISGYACCNQLENIQ-------------------NLIQKM------------KGDGFE- 212

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            PN  V ++  +I G   +GH   A+ LF  M +  L PD     I+L AC+ +  +  G
Sbjct: 213 -PN--VYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARG 269

Query: 452 WRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
            +    +++  Y +       A +VD+  + G +K A ++ N +   P+  +  A+L A 
Sbjct: 270 KQVHAHSIRQGYEL--DVHIGAALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAY 326

Query: 511 KLYSDIELG 519
            ++   + G
Sbjct: 327 AMHGHGDEG 335



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 6/183 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+H I++G E D  + A  + + ++    + ++  V+NRI NPN    N +L  Y+ +
Sbjct: 271 QVHAHSIRQGYELDVHIGAALVDM-YAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMH 329

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  ++     PD  TF  V+ +C H  +V  G      +  + V   +   
Sbjct: 330 GHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHY 389

Query: 175 TSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDL----VEAKTVFDLMP 229
           T ++DL  +   +  A ++  ++P + + V W A++ G    G++    + A+++ +L P
Sbjct: 390 TCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEP 449

Query: 230 ERS 232
             +
Sbjct: 450 NNT 452


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 187/514 (36%), Positives = 293/514 (57%), Gaps = 45/514 (8%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++ G++Q  RF E     V +  E+ V ++Y+F   + AC+ ++ +  G  IH  + 
Sbjct: 119 WNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIA 178

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           +     DV++G++L+D+Y K + ++ A++ FD+M  RN+VSW ++I  Y   G   +A  
Sbjct: 179 KSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALE 238

Query: 224 VFDLM------PERSNVS----------------------------------WNALIGGL 243
           VF  M      P+   ++                                   NAL+   
Sbjct: 239 VFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMY 298

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            K   +  AR +FD MP R+VVS T+M+ GYAK   + +AR +F    +R+VV+W+ALI+
Sbjct: 299 AKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIA 358

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-- 361
           GY QNG+ +EAV++F  +  +++ P  +   +L++AC+ + +L L     +++ +     
Sbjct: 359 GYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWF 418

Query: 362 ---DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
              + S   V  +L+DM  KCG ++    +FE M  RD VS+ +MI G + +G+G +A+ 
Sbjct: 419 KSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALE 478

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           +F  ML  G  PD V    VL+ACSH GLVE+G  +F++M   + +VP  +HY CMVDLL
Sbjct: 479 IFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLL 538

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR G L  A  L+ +MP+EP A  WG+LL ACK++ +I LG+ VA RL E++P N+G YV
Sbjct: 539 GRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYV 598

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LLSN+YA   RW DV  VR +M++ G+ K PGCS
Sbjct: 599 LLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCS 632



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 198/417 (47%), Gaps = 48/417 (11%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  I K     D  + +  + + +S    ++ +   F+ +   N   WN+L+  Y QN
Sbjct: 172 QIHGLIAKSRYSLDVYMGSALVDM-YSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQN 230

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFV 173
               +   +FVR++     PD+ T   V  AC+ + ++REG  IHA V++      D+ +
Sbjct: 231 GPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVL 290

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G +L+D+Y K + ++ AR VFD MP R+VVS T+M+ GYA    +  A+ +F  M ER+ 
Sbjct: 291 GNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV 350

Query: 234 VSWNALIGGLVKIG-----------------------------------DLRSARQL--- 255
           VSWNALI G  + G                                   DL+  RQ    
Sbjct: 351 VSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTH 410

Query: 256 -------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
                  F    + ++    ++ID Y K G +   R +FE   +RD V+W+A+I GYAQN
Sbjct: 411 ILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQN 470

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G   EA++IF +M     +PD   ++ ++SACS  G ++        ++  H  +     
Sbjct: 471 GYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDH 530

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              +VD+  + G +D A  L +TMP   D V + S++    +HG+      + +R+L
Sbjct: 531 YTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLL 587



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 184/398 (46%), Gaps = 56/398 (14%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D   F  ++  C    SV E   +HA +I+     ++F+   L+D+YGK   +  ARKVF
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
           D M +RN  SW A++      G L EA  +F  MPER   SWNA++ G  +      A +
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 255 LFDEMPERNVV----SY-----------------------------------TTMIDGYA 275
              +M   + V    S+                                   + ++D Y+
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K   + SA+  F+    R++V+W++LI+ Y QNG   +A+++F  M +  ++PDE  L S
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           + SAC+ +  +     + + + +     +   +  ALVDM AKC  ++ A  +F+ MP R
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           DVVS  SM+ G +     + A  +F  M+   +    V++  ++   +  G  E+  R F
Sbjct: 318 DVVSETSMVSGYAKASSVKAARLMFSNMMERNV----VSWNALIAGYTQNGENEEAVRLF 373

Query: 456 EAMQNVYAIVPSPEHY-------AC--MVDL-LGRTGH 483
             ++   +I P+  HY       AC  + DL LGR  H
Sbjct: 374 LLLKR-ESIWPT--HYTFGNLLNACANLADLKLGRQAH 408



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 155/299 (51%), Gaps = 16/299 (5%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N L+    K G L  AR++FD M +RN  S+  ++    K G +  A +LF+  P+RD  
Sbjct: 58  NRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQC 117

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+A++SG+AQ  + +EA++   DM S++   +E+   S +SAC+ + +L +   +   +
Sbjct: 118 SWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLI 177

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           ++S   L   ++ +ALVDM +KC  +  A   F+ M  R++VS+ S+I     +G   +A
Sbjct: 178 AKSRYSLD-VYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKA 236

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA---- 472
           + +F RM++ G+ PDE+    V +AC+ +  + +G +       ++A V   + Y     
Sbjct: 237 LEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQ-------IHARVMKHDKYRNDLV 289

Query: 473 ---CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
               +VD+  +   +  A  + + MP+    S    + G  K  S ++   L+ + + E
Sbjct: 290 LGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKA-SSVKAARLMFSNMME 347


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 307/549 (55%), Gaps = 45/549 (8%)

Query: 27   APINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
            AP N  K         +IK+C     L    + +IK  L QD  L+  FI+ C S    L
Sbjct: 772  APPNLKK---------IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKR-L 821

Query: 87   SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
              + +   ++  PN F++N L KG+   S  I    ++VR++R+   P  YT+  ++KA 
Sbjct: 822  DLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKAS 881

Query: 147  SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
            S   + R G ++ A + ++G    V + T+LID Y                         
Sbjct: 882  S--FASRFGESLQAHIWKFGFGFHVKIQTTLIDFY------------------------- 914

Query: 207  AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
                  ++ G + EA+ VFD MPER +++W  ++    ++ D+ SA  L ++M E+N  +
Sbjct: 915  ------SATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEAT 968

Query: 267  YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
               +I+GY  +G++  A SLF   P +D+++W+ +I GY+QN +  EA+ +F  M  + +
Sbjct: 969  SNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGI 1028

Query: 327  QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
             PDE  + +++SAC+ +G L++   V  Y  ++   L   ++ +ALVDM +KCG+++RA 
Sbjct: 1029 IPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLD-VYIGSALVDMYSKCGSLERAL 1087

Query: 387  ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
             +F  +P +++  + S+I+GL+ HG  ++A+ +F +M  E + P+ V F  V TAC+H G
Sbjct: 1088 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAG 1147

Query: 447  LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            LV++G R + +M + Y+IV + EHY  MV L  + G +  A EL+ +M  EP+A  WGAL
Sbjct: 1148 LVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGAL 1207

Query: 507  LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
            L  C+++ ++ + E+  N+L  LEP N+G Y LL ++YA  +RW DV  +R +M+E G+ 
Sbjct: 1208 LDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIE 1267

Query: 567  KI-PGCSSL 574
            KI PG SS+
Sbjct: 1268 KICPGTSSI 1276


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 184/579 (31%), Positives = 321/579 (55%), Gaps = 54/579 (9%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLATPLSYSTAVFNRIVNP 99
           ++++  CK      Q+HS  I +G+  + +     F+  C  L   +SY+  +F +I  P
Sbjct: 38  ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI- 158
           +  +WN ++KG+S+     E   +++ +++E   PD +TFP ++         R+G A+ 
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLK-----RDGGALA 152

Query: 159 -----HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
                H  V+++G+  +++V  +L+ +Y     +  AR VFD   + +V SW  MI GY 
Sbjct: 153 CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 214 SVGDLVEAKTVFDLMPERSNVS-------------------------------------- 235
            + +  E+  +   M ER+ VS                                      
Sbjct: 213 RMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271

Query: 236 --WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
              NAL+      G++  A ++F  M  R+V+S+T+++ GY + G++  AR+ F+  P R
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D ++W+ +I GY + G  +E+++IF +M S  + PDEF +VS+++AC+ +G+L++  W+ 
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           +Y+ ++ +  +   V  AL+DM  KCG  ++A ++F  M  RD  ++ +M+ GL+ +G G
Sbjct: 392 TYIDKNKIK-NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG 450

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           ++A+ +F +M    + PD++ +  VL+AC+H G+V+   +FF  M++ + I PS  HY C
Sbjct: 451 QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+LGR G +K AYE+L  MP+ P++  WGALLGA +L++D  + EL A ++ ELEP N
Sbjct: 511 MVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDN 570

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              Y LL NIYA   RW D+  VR K+ +  ++K PG S
Sbjct: 571 GAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 198/578 (34%), Positives = 310/578 (53%), Gaps = 84/578 (14%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL-----CHSLATPLSYSTAVF 93
           S+L LI+  ++      +H  ++K G E +  +V   + +     C S A  L +    F
Sbjct: 173 SSLGLIQTGEM------IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFL-FKGLEF 225

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           +R    N  LW  ++ GY+QN    +    F  +  +    ++YTFP ++ ACS VL+  
Sbjct: 226 DR---KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARC 282

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +H  +++ G   +V+V ++L+D+Y K                              
Sbjct: 283 FGEQVHGFIVKSGFGSNVYVQSALVDMYAK------------------------------ 312

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN--VVSYT--- 268
             GDL  AK + + M +   VSWN+L+ G V+ G    A +LF  M  RN  +  YT   
Sbjct: 313 -CGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPS 371

Query: 269 --------------------------------TMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                                            ++D YAK GDM  A ++FE   ++DV+
Sbjct: 372 VLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVI 431

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W++L++GYAQN   +E++KIF DM    V PD+FI+ S++SAC+++  L+    V    
Sbjct: 432 SWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDF 491

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            +S +  S++ V  +LV M AKCG +D A  +F +M  +DV+++ ++I G + +G GR +
Sbjct: 492 IKSGLRWSQS-VYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNS 550

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           +  +D M+S G  PD + F  +L ACSH GLV++G ++F+ M  VY I P PEHYACM+D
Sbjct: 551 LKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMID 610

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           L GR+G L  A +LL+ M V+P A+ W +LL AC+++ ++EL E  A  LFELEP NA  
Sbjct: 611 LFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMP 670

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           YV+LSN+Y+ + +W DV  +R  MK +G+ K PGCS L
Sbjct: 671 YVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWL 708



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 211/413 (51%), Gaps = 25/413 (6%)

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           GY +    +E F +F  +  E     ++T   V++ CS +  ++ G  IH  V++ G + 
Sbjct: 136 GYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEG 195

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           +VFV T L+D+Y K K +S A  +F   E   +N V WTAM+ GYA  GD  +A   F  
Sbjct: 196 NVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRY 255

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE---------RNVVSYTTMIDGYAKVG 278
           M  +  V  N      +         + F E             NV   + ++D YAK G
Sbjct: 256 MHAQG-VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCG 314

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D+ +A+++ E   D DVV+W++L+ G+ ++G  +EA+++F +M  +N++ D++   S+++
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            C  VG+++  + V   + ++  +  +  V  ALVDM AK G+MD A  +FE M  +DV+
Sbjct: 375 CCV-VGSINPKS-VHGLIIKTGFENYKL-VSNALVDMYAKTGDMDCAYTVFEKMLEKDVI 431

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR----F 454
           S+ S++ G + +    +++ +F  M   G+ PD+     +L+AC+ + L+E G +    F
Sbjct: 432 SWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDF 491

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            ++      +  S   Y  +V +  + G L  A  +  SM V+     W A++
Sbjct: 492 IKS-----GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKD-VITWTAII 538



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 64/389 (16%)

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
           E ++    L++   K  +++ ARK+FD+MP+++  SW  MI  Y +VG LVEA+ +FD  
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMP---------------------------- 260
             +S+++W+++I G  K G    A  LF  M                             
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 261 -----------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DR-DVVAWSALISGYAQ 307
                      E NV   T ++D YAK   ++ A  LF+    DR + V W+A+++GYAQ
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 242

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG   +AV+ F  M ++ V+ +++   ++++ACS V        V  ++ +S    S  +
Sbjct: 243 NGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFG-SNVY 301

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V +ALVDM AKCG++  A  + ETM + DVVS+ S++ G   HG   +A+ LF  M    
Sbjct: 302 VQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN 361

Query: 428 LTPDEVAFTIVLTAC---------SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           +  D+  F  VL  C          H  +++ G+  ++ + N             +VD+ 
Sbjct: 362 MKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA------------LVDMY 409

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALL 507
            +TG +  AY +   M +E    +W +L+
Sbjct: 410 AKTGDMDCAYTVFEKM-LEKDVISWTSLV 437


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/579 (31%), Positives = 321/579 (55%), Gaps = 54/579 (9%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLATPLSYSTAVFNRIVNP 99
           ++++  CK      Q+HS  I +G+  + +     F+  C  L   +SY+  +F +I  P
Sbjct: 38  ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI- 158
           +  +WN ++KG+S+     E   +++ +++E   PD +TFP ++         R+G A+ 
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLK-----RDGGALA 152

Query: 159 -----HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
                H  V+++G+  +++V  +L+ +Y     +  AR VFD   + +V SW  MI GY 
Sbjct: 153 CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212

Query: 214 SVGDLVEAKTVFDLMPERSNVS-------------------------------------- 235
            + +  E+  +   M ER+ VS                                      
Sbjct: 213 RMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271

Query: 236 --WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
              NAL+      G++  A ++F  M  R+V+S+T+++ GY + G++  AR+ F+  P R
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D ++W+ +I GY + G  +E+++IF +M S  + PDEF +VS+++AC+ +G+L++  W+ 
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           +Y+ ++ +  +   V  AL+DM  KCG  ++A ++F  M  RD  ++ +M+ GL+ +G G
Sbjct: 392 TYIDKNKIK-NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG 450

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           ++A+ +F +M    + PD++ +  VL+AC+H G+V+   +FF  M++ + I PS  HY C
Sbjct: 451 QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+LGR G +K AYE+L  MP+ P++  WGALLGA +L++D  + EL A ++ ELEP N
Sbjct: 511 MVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDN 570

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              Y LL NIYA   RW D+  VR K+ +  ++K PG S
Sbjct: 571 GAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/543 (36%), Positives = 311/543 (57%), Gaps = 17/543 (3%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV-NPNT 101
           L K+C     L QVH+ ++ K     HS   H +S    L    +Y++ +F+ I  +PN 
Sbjct: 24  LAKQCSSSKTLQQVHAQMVVK--SSIHSPNNHLLSKAIHLKN-FTYASLLFSHIAPHPND 80

Query: 102 FLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           + +N +++  +     +    T+F R++     P+ +TFP    +C+++  +    A H+
Sbjct: 81  YAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHS 140

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V +  +  D     SLI +Y +   ++ ARKVFDE+P R++VSW +MI GYA  G   E
Sbjct: 141 LVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCARE 200

Query: 221 AKTVFDLMPERSN-----VSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SY--TTMI 271
           A  VF  M  R       +S  +++G   ++GDL   R +   + ER +   SY  + +I
Sbjct: 201 AVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALI 260

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             YAK GD+ SAR +F+    RDV+ W+A+ISGYAQNG  DEA+ +F  M    V  ++ 
Sbjct: 261 SMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKI 320

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            L +++SAC+ +G LDL   +D Y S+         V  AL+DM AKCG++  A  +F+ 
Sbjct: 321 TLTAVLSACATIGALDLGKQIDEYASQRGFQ-HDIFVATALIDMYAKCGSLASAQRVFKE 379

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVE 449
           MP ++  S+ +MI  L+ HG  ++A+SLF  M  EG    P+++ F  +L+AC H GLV 
Sbjct: 380 MPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVN 439

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G+R F+ M  ++ +VP  EHY+CMVDLL R GHL  A++L+  MP +P     GALLGA
Sbjct: 440 EGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGA 499

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+   ++++GE V   + E++P N+G+Y++ S IYA  + W D   +R  M+++G+ K P
Sbjct: 500 CRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTP 559

Query: 570 GCS 572
           GCS
Sbjct: 560 GCS 562


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/474 (37%), Positives = 282/474 (59%), Gaps = 9/474 (1%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   + +LL+GY ++    +   +F ++     V    ++ +++        V E   +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHV----SYTVLLGGLLDAGRVNEARRL 165

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              +     D DV   T+++  Y +   I+ AR +FDEMP+RNVVSWTAMI GYA  G++
Sbjct: 166 FDEM----PDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
             A+ +F++MPER+ VSW A++ G ++ G +  A +LF+ MPE  V +   M+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + +A+++FE   +RD   WSA+I  Y QN    EA+  F +M  + V+P+   ++S+++
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            C+ +  LD    V + + R   D+     ++AL+ M  KCGN+D+A  +F T   +D+V
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMD-VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + SMI G + HG G QA+ +F  M   G++PD + +   LTACS+ G V++G   F +M
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
               +I P  EHY+CMVDLLGR+G ++ A++L+ +MPVEP A  WGAL+GAC+++ + E+
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E  A +L ELEP NAG YVLLS+IY +  RW D   +R  +  R L K PGCS
Sbjct: 521 AEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCS 574



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 149/331 (45%), Gaps = 63/331 (19%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL--- 243
           I  AR  F+ MP R   S+ A++ GY        A  +F  MP R   S+NALI GL   
Sbjct: 33  IEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 244 ------------------------------VKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                         V+ G L  A +LF +MPERN VSYT ++ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
               G +  AR LF+  PDRDVVAW+A++SGY Q G+  EA  +F +M  +NV       
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSW 208

Query: 334 VSLMSACSQVGNLDLS-------------NWVD---SYLSRSHMDLSR-------AHVIA 370
            +++S  +Q G ++L+             +W      Y+   H++ +         H +A
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268

Query: 371 ALVDMNAKCGN---MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           A   M    G    +D A  +FE M  RD  ++ +MIK    +    +A+S F  ML  G
Sbjct: 269 ACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG 328

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           + P+  +   +LT C+ + +++ G     AM
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAM 359



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 170/410 (41%), Gaps = 82/410 (20%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  ++ + A+F+ +   N   W  ++ GY+QN        +F      E +P++      
Sbjct: 187 AGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLF------EVMPERNE---- 236

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                               + W         T+++  Y +   +  A ++F+ MPE  V
Sbjct: 237 --------------------VSW---------TAMLVGYIQAGHVEDAAELFNAMPEHPV 267

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
            +  AM+VG+   G +  AKTVF+ M ER + +W+A+I    +   L  A   F EM  R
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 263 ---------------------------------------NVVSYTTMIDGYAKVGDMTSA 283
                                                  +V + + +I  Y K G++  A
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKA 387

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F     +D+V W+++I+GYAQ+G  ++A+ IF DM    + PD    +  ++ACS  
Sbjct: 388 KRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT 447

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
           G +     + + ++ +      A   + +VD+  + G ++ A +L + MP   D V + +
Sbjct: 448 GKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGA 507

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC-SHVGLVEDG 451
           ++    +H +   A     ++L   L P      ++L+   + VG  ED 
Sbjct: 508 LMGACRMHRNAEIAEFAAKKLLE--LEPGNAGPYVLLSHIYTSVGRWEDA 555



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 154/335 (45%), Gaps = 30/335 (8%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA I  L + G++  AR  F+ MP R   SY  ++ GY +     +A  LF   P RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 297 AWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL-DLSNWVD 353
           +++ALISG +   Q  PD A    + + S    P      SL+    + G L D      
Sbjct: 81  SYNALISGLSLRRQTLPDAA----AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
               R+H  +S   ++  L+D     G ++ A  LF+ MP+RDVV++ +M+ G    G  
Sbjct: 137 QMPERNH--VSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRI 190

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A +LFD M    +    V++T +++  +  G V    + FE M       P     + 
Sbjct: 191 TEARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSW 239

Query: 474 MVDLLG--RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
              L+G  + GH++ A EL N+MP  P A+    ++G  +    ++  + V  ++ E   
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQ-RGMVDAAKTVFEKMCE--- 295

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           ++ G++  +   Y   +  ++      +M  RG+R
Sbjct: 296 RDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVR 330



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 37/314 (11%)

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
            A I   A  G++  A+  F+ MP R+  S+NAL+ G  +     +A  LF  MP R++ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 266 SYTTMIDGYA----KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           SY  +I G +     + D  +A +     P   VV++++L+ GY ++G   +A+++F  M
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPP--SVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC-- 379
             +N      +L  L+ A    G ++ +        R   ++    V+A    ++  C  
Sbjct: 139 PERNHVSYTVLLGGLLDA----GRVNEAR-------RLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A  LF+ MP R+VVS+ +MI G + +G    A  LF+ M       +EV++T +L
Sbjct: 188 GRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAML 243

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YAC--MVDLLGRTGHLKSAYELLNSMP 495
                 G VED    F AM         PEH   AC  M+   G+ G + +A  +   M 
Sbjct: 244 VGYIQAGHVEDAAELFNAM---------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKM- 293

Query: 496 VEPHASAWGALLGA 509
            E     W A++ A
Sbjct: 294 CERDDGTWSAMIKA 307



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 122/261 (46%), Gaps = 18/261 (6%)

Query: 61  IKKGLEQDHSLVAHFISLCHSLATPLSY------STAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++   E  +++  H ++ C+++            +  VF ++   +   W+ ++K Y QN
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              +E  + F  ++     P+  +   ++  C+ +  +  G  +HAA++R   D DVF  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV 371

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
           ++LI +Y K   +  A++VF     +++V W +MI GYA  G   +A  +F  M   + +
Sbjct: 372 SALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDM-RLAGM 430

Query: 235 SWNAL--IGGLVK---IGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSAR 284
           S + +  IG L      G ++  R++F+ M   + +      Y+ M+D   + G +  A 
Sbjct: 431 SPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAF 490

Query: 285 SLFEAAP-DRDVVAWSALISG 304
            L +  P + D V W AL+  
Sbjct: 491 DLIKNMPVEPDAVIWGALMGA 511


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 310/530 (58%), Gaps = 17/530 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ +I+ G   +  L  HF++L +S    L Y+  +F+++   N   W +++ G++ N
Sbjct: 96  QLHAMLIRGGCLPNTFLSNHFLNL-YSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHN 154

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           SRF E  + F ++  E  +  ++    V++AC+ + +++ GT +H  V++ G   ++FVG
Sbjct: 155 SRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVG 214

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSN 233
           ++L D+Y K  E+S A K F+EMP ++ V WT+MI G+   GD  +A T +  ++ +   
Sbjct: 215 SNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVF 274

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMI-----DGYAKVGDMTSAR 284
           +  + L   L     L+++   F +     ++     Y T I     D Y+K GDM SA 
Sbjct: 275 IDQHVLCSTLSACSALKASS--FGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSAS 332

Query: 285 SLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           ++F+   D   +V+ +A+I GY +  Q ++A+  F D+  + ++P+EF   SL+ AC+  
Sbjct: 333 NVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQ 392

Query: 344 GNLDLSNWVDSYLSRSHMDLSR-AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
             L+  + +   + +   +  R   V + LVDM  KCG  D + +LF+ + N D +++ +
Sbjct: 393 AKLEHGSQLHGQVVK--FNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNT 450

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           ++   S HG GR A+  F+ M+  GL P+ V F  +L  CSH G+VEDG  +F +M+ +Y
Sbjct: 451 LVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIY 510

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            +VP  EHY+C++DLLGR G LK A + +N+MP EP+   W + LGACK++ D+E  +  
Sbjct: 511 GVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFA 570

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A++L +LEP+N+G++VLLSNIYA   +W DV  +R  +K+  + K+PG S
Sbjct: 571 ADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYS 620



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 186/385 (48%), Gaps = 12/385 (3%)

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           + D  T   +I+  +    + +G  +HA +IR G   + F+    ++LY K  E+    K
Sbjct: 72  LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGD 248
           +FD+M +RN+VSWT++I G+A      EA + F  M     +    + ++++     +G 
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGA 191

Query: 249 LRSARQLFDEMPERN----VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           ++   Q+   + +      +   + + D Y+K G+++ A   FE  P +D V W+++I G
Sbjct: 192 IQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDG 251

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           + +NG   +A+  +  M + +V  D+ +L S +SACS +        + + + +   +  
Sbjct: 252 FVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEY- 310

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
              +  AL DM +K G+M  A+ +F+   +   +VS  ++I G        +A+S F  +
Sbjct: 311 ETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL 370

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
              G+ P+E  FT ++ AC++   +E G +    +   +     P   + +VD+ G+ G 
Sbjct: 371 RRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLVDMYGKCGL 429

Query: 484 LKSAYELLNSMPVEPHASAWGALLG 508
              + +L + +   P   AW  L+G
Sbjct: 430 FDHSIQLFDEIE-NPDEIAWNTLVG 453


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/554 (35%), Positives = 303/554 (54%), Gaps = 50/554 (9%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYST 90
           K SCL  +L   + CK    L Q+H  I K GL+Q  S +   ++    +A+P  L Y+ 
Sbjct: 24  KDSCLNESL---RCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 91  AVFNRI-----VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
             F         +   F+ N+L++GYS      E   ++VR++     P+ YTFP V+  
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + +  EG  +H +V++ G++EDVF+   LI  Y                        
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFY------------------------ 176

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
                  A  G +     VF+ M ER+ VSW +LI G  +    + A  LF EM   N V
Sbjct: 177 -------AECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM--LNKV 227

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
               ++D Y K G + +A+ LF+   DR++V ++ ++S YA+ G   EA+ I  +M  + 
Sbjct: 228 MVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQG 287

Query: 326 VQPDEFILVSLMSACSQV-----GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
            +PD   ++S +SA +Q+     G +    WV +Y+ ++ +      +  ALVDM A+CG
Sbjct: 288 PRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCD-MRLNTALVDMFARCG 346

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +   A ++F  M  RDV ++ + I  +++ G+G  A  LF++ML +G+ PD V F  VLT
Sbjct: 347 DPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLT 406

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH G VE G   F  M++ + I P  EHY CMVDLLGR G L+ A++L+ SMP+EP+ 
Sbjct: 407 ACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPND 465

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             WG+LL AC+++ ++E+    A R+ EL PQ AG +VLLSNIYA+A +W DV  VR  +
Sbjct: 466 VVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNL 525

Query: 561 KERGLRKIPGCSSL 574
           +E+G+RK+PG SS+
Sbjct: 526 REKGVRKVPGSSSV 539


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 308/556 (55%), Gaps = 24/556 (4%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           P N+  P        +I+ C+   +L     +H  + K GL+ DH + A  + + +    
Sbjct: 28  PDNYTLP-------FVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM-YVKCR 79

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            +  +  +F+++   +   W  ++ GY++  +  E   +F ++  E  VPDK     V+ 
Sbjct: 80  EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 139

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + ++ +   I   + R     DV +GT++ID+Y K   +  AR++FD M E+NV+S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQL--- 255
           W+AMI  Y   G   +A  +F +M      P++  ++  +L+     + +L+  R +   
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK--ITLASLLYACSDLKNLQMGRLIHHI 257

Query: 256 -FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
            +    + +      ++D Y K  ++  AR LF+  P+RD+V W+ +I GYA+ G  +E+
Sbjct: 258 VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANES 317

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           + +F  M  + V PD+  +V+++ AC+++G +  +  +D Y+ R    L    +  A++D
Sbjct: 318 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD-VILGTAMID 376

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M+AKCG ++ A E+F+ M  ++V+S+ +MI     HG GR+A+ LF  ML  G+ P+++ 
Sbjct: 377 MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 436

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
              +L ACSH GLVE+G RFF  M   Y++    +HY C+VDLLGR G L  A +L+ SM
Sbjct: 437 LVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
            VE     WGA LGAC+ + D+ L E  A  L EL+PQN G Y+LLSNIYA A RW DV 
Sbjct: 497 TVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 556

Query: 555 LVRSKMKERGLRKIPG 570
             R  M +R L+KIPG
Sbjct: 557 KTRDLMSQRRLKKIPG 572



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/411 (34%), Positives = 234/411 (56%), Gaps = 11/411 (2%)

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           ++ G+++   +I  F  F  LIR  A PD YT P VI+AC  + +++ G  IH  V ++G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           +D D FV  +L+D+Y K +EI  AR +FD+M ER++V+WT MI GYA  G   E+  +F+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 227 LMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVG 278
            M E       V+   ++    K+G +  AR + D +  +    +V+  T MID YAK G
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + SAR +F+   +++V++WSA+I+ Y  +GQ  +A+ +F  M S  + PD+  L SL+ 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           ACS + NL +   +   + +  +DL    V AALVDM  KC  ++ A  LF+ MP RD+V
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDH-FVCAALVDMYGKCREIEDARFLFDKMPERDLV 299

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++  MI G +  G+  +++ LFD+M  EG+ PD+VA   V+ AC+ +G +       + +
Sbjct: 300 TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 359

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           Q     +      A M+D+  + G ++SA E+ + M  E +  +W A++ A
Sbjct: 360 QRKKFQLDVILGTA-MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAA 408


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 304/527 (57%), Gaps = 11/527 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ +I  G      L  H +++ +S    L ++  +F+ +   N   W  ++ G SQN
Sbjct: 26  QLHALLICAGYTPCTFLTNHLVNM-YSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           S+F E    F  +     VP ++ F   I+AC+ + S+  G  +H   +++G+  ++FVG
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-PERSN 233
           ++L D+Y K   +  A KVF+EMP ++ VSWTAMI GY+ +G+  EA   F  M  E   
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 234 VSWNALIGGLVKIGDLRSAR-------QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           +  + L   L   G L++ +        +     E ++     + D Y+K GDM SA ++
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 287 FEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           F    + R+VV+++ LI GY +  Q ++ + +F ++  + ++P+EF   SL+ AC+    
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+    + + + + + D     V + LVDM  KCG +++A + F+ + +   +++ S++ 
Sbjct: 325 LEQGTQLHAQVMKINFD-EDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVS 383

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
               HG G+ A+ +F+RM+  G+ P+ + F  +LT CSH GLVE+G  +F +M   Y +V
Sbjct: 384 VFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVV 443

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY+C++DLLGR G LK A E +N MP EP+A  W + LGAC+++ D E+G+L A +
Sbjct: 444 PGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEK 503

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L +LEP+N+G+ VLLSNIYA   +W DV  VR +M++  ++K+PG S
Sbjct: 504 LVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 550



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 186/382 (48%), Gaps = 12/382 (3%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D      VI+  +    +R G  +HA +I  G     F+   L+++Y K  E+  A K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLR 250
           D MP+RN+VSWTAMI G +      EA   F  M     V    ++++ I     +G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 251 SARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             +Q+     +  + S     + + D Y+K G M  A  +FE  P +D V+W+A+I GY+
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           + G+ +EA+  F  M  + V  D+ +L S + AC  +        V S + +   + S  
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-SDI 242

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            V  AL DM +K G+M+ A+ +F      R+VVSY  +I G        + +S+F  +  
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
           +G+ P+E  F+ ++ AC++   +E G +    +  +      P   + +VD+ G+ G L+
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI-NFDEDPFVSSILVDMYGKCGLLE 361

Query: 486 SAYELLNSMPVEPHASAWGALL 507
            A +  + +  +P   AW +L+
Sbjct: 362 QAIQAFDEIG-DPTEIAWNSLV 382


>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 508

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/522 (35%), Positives = 290/522 (55%), Gaps = 39/522 (7%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           L Q+H +++ KG+      +   +  C  S    + Y+  VF+ I +P+ F+ N +++GY
Sbjct: 13  LKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHNVMVRGY 72

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           + ++     F ++ R+      PD +TF  +++AC+ +     G  +H AV++ G  +D 
Sbjct: 73  AHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKLGYFKDA 132

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           FV  +LI+++ K  ++  A  + DE  ER+VV+ +A+I G+A+ G+L  A+ +FD    +
Sbjct: 133 FVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDECQHK 192

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
             V WN ++    K G++  AR L D  PE++VVS+ T                      
Sbjct: 193 DLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNT---------------------- 230

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
                    +I+GY   G   EA+++  +M    + PDE  +VSL+S C+ +G+L     
Sbjct: 231 ---------IITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRM 281

Query: 352 VDSYLSRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
           + S     H++      I    ALV M AKCG++  A E+F  M  RDV ++ S+I GL+
Sbjct: 282 IHSL----HLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLA 337

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
            HG   Q+V  F++ML EGL P+E++F  VL ACSH GLVEDG R+F  M N Y I P+ 
Sbjct: 338 FHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNA 397

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
            HY+C+VD+LGR+G L  A+ +++SM  EP    W  LLGAC+++ D+ LG+L   RL +
Sbjct: 398 RHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARERLLK 457

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +    +G YVLLS IYA+ D W  V  VR  M ERG+RK+ G
Sbjct: 458 MNEDASGDYVLLSGIYASCDEWFGVETVRGSMDERGIRKVAG 499


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/387 (43%), Positives = 249/387 (64%), Gaps = 1/387 (0%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           I+ A KVF EM E+NVV WT+MI GY    DLV A+  FDL PER  V WN +I G +++
Sbjct: 44  IASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEM 103

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           G++  AR LFD+MP R+V+S+ T+++GYA +GDM +   +F+  P+R+V +W+ LI GYA
Sbjct: 104 GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYA 163

Query: 307 QNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           QNG+  E +  F  M  + +V P++  +  ++SAC+++G  D   WV  Y      +   
Sbjct: 164 QNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVD 223

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            +V  AL+DM  KCG ++ A E+F+ +  RD++S+ +MI GL+ HGHG +A++LF  M +
Sbjct: 224 VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKN 283

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
            G++PD+V F  VL AC H+GLVEDG  +F +M   ++I+P  EH  C+VDLL R G L 
Sbjct: 284 SGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLT 343

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            A E +N MPV+  A  W  LLGA K+Y  +++GE+    L +LEP+N  ++V+LSNIY 
Sbjct: 344 QAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYG 403

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCS 572
            A R+ D   ++  M++ G +K  G S
Sbjct: 404 DAGRFDDAARLKVAMRDTGFKKEAGVS 430



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 47/260 (18%)

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           L G L  +G + SA ++F EM E+NVV +T+MI+GY    D+ SAR  F+ +P+RD+V W
Sbjct: 34  LFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLW 93

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           + +ISGY + G   EA  +F  M  ++V     +L                   + Y   
Sbjct: 94  NTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVL-------------------EGY--- 131

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
                             A  G+M+    +F+ MP R+V S+  +IKG + +G   + + 
Sbjct: 132 ------------------ANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLG 173

Query: 419 LFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDG-W--RFFEAMQNVYAIVPSPEHYACM 474
            F RM+ EG + P++   T+VL+AC+ +G  + G W  ++ E +   Y  V      A +
Sbjct: 174 SFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLG--YNKVDVNVKNA-L 230

Query: 475 VDLLGRTGHLKSAYELLNSM 494
           +D+ G+ G ++ A E+   +
Sbjct: 231 IDMYGKCGAIEIAMEVFKGI 250



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 140/322 (43%), Gaps = 56/322 (17%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LWNT++ GY +    +E  ++F      + +P           C  V+S           
Sbjct: 92  LWNTMISGYIEMGNMLEARSLF------DQMP-----------CRDVMS----------- 123

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
             W          ++++ Y    ++    +VFD+MPERNV SW  +I GYA  G + E  
Sbjct: 124 --W---------NTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVL 172

Query: 223 TVFDLMPERSNVSWNALIGGLV-----KIG--DLRSARQLFDEMPERNVVSYTT---MID 272
             F  M +  +V  N     LV     K+G  D       + E    N V       +ID
Sbjct: 173 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALID 232

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y K G +  A  +F+    RD+++W+ +I+G A +G   EA+ +F +M +  + PD+  
Sbjct: 233 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 292

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI---AALVDMNAKCGNMDRAAELF 389
            V ++ AC  +G ++      +Y +    D S    I     +VD+ ++ G + +A E  
Sbjct: 293 FVGVLCACKHMGLVEDGL---AYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFI 349

Query: 390 ETMPNR-DVVSYCSMIKGLSIH 410
             MP + D V + +++    ++
Sbjct: 350 NKMPVKADAVIWATLLGASKVY 371



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 18/227 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVL 150
           VF+ +   N F WN L+KGY+QN R  EV   F R++ E   VP+  T  LV+ AC+ + 
Sbjct: 143 VFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLG 202

Query: 151 SVREGTAIHAAVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +   G  +H      G ++ DV V  +LID+YGK   I  A +VF  +  R+++SW  MI
Sbjct: 203 AFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMI 262

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWN--ALIG--------GLVKIG--DLRSARQLFD 257
            G A+ G   EA  +F  M + S +S +    +G        GLV+ G     S    F 
Sbjct: 263 NGLAAHGHGTEALNLFHEM-KNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFS 321

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
            MPE  +     ++D  ++ G +T A       P + D V W+ L+ 
Sbjct: 322 IMPE--IEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLG 366


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 213/639 (33%), Positives = 324/639 (50%), Gaps = 110/639 (17%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT--PLSYSTAVFNRIVNP 99
           +L++ CK   H  Q+ S  I  GL  D    +  I+      T  P  YS  +FN + NP
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67

Query: 100 NTFLWNTLLKG--YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           NTF WNT+++   Y QNS   +    +   +   A PD YT+P++++ C+  +S  EG  
Sbjct: 68  NTFTWNTIMRAHLYLQNSPH-QALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQ 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYG-------------------------------KRKE 186
           +HA  +  G D DV+V  +L++LY                                +  E
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGE 186

Query: 187 ISCARKVFDEMPERN---------------------------------VVSWTAMIVGYA 213
           +  A +VF+ MPERN                                 +VSW+AM+  Y 
Sbjct: 187 VEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYE 246

Query: 214 SVGDLVEAKTVFDLMPERS-------------------NVS---W--------------- 236
                 EA  +F  M                       NV    W               
Sbjct: 247 QNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVS 306

Query: 237 --NALIGGLVKIGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
             NALI      G++  AR++FD+  E  +++S+ +MI GY + G +  A  LF + P++
Sbjct: 307 LKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEK 366

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           DVV+WSA+ISGYAQ+    EA+ +F +M    V+PDE  LVS +SAC+ +  LDL  W+ 
Sbjct: 367 DVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIH 426

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           +Y+SR+ + ++   +   L+DM  KCG ++ A E+F  M  + V ++ ++I GL+++G  
Sbjct: 427 AYISRNKLQVNVI-LSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSV 485

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            Q++++F  M   G  P+E+ F  VL AC H+GLV DG  +F +M + + I  + +HY C
Sbjct: 486 EQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGC 545

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLLGR G LK A EL++SMP+ P  + WGALLGAC+ + D E+GE +  +L +L+P +
Sbjct: 546 MVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDH 605

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G +VLLSNIYA+   W +V  +R  M + G+ K PGCS
Sbjct: 606 DGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCS 644


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 316/558 (56%), Gaps = 22/558 (3%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           NF  PS +L A  LI    L     +VH  ++K G   D   V + + + +S    L+ +
Sbjct: 124 NFVIPS-VLKACCLIPSFLLG---QEVHGFVVKNGFHGD-VFVCNALIMMYSEVGSLALA 178

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             +F++I N +   W+T+++ Y ++    E   +   +      P +     +    + +
Sbjct: 179 RLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAEL 238

Query: 150 LSVREGTAIHAAVIRWGV--DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
             ++ G A+HA V+R G      V + T+LID+Y K + ++ AR+VFD + + +++SWTA
Sbjct: 239 ADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTA 298

Query: 208 MIVGYASVGDLVEAKTVFDLMPER----SNVSWNALI-----GGLVKIGDLRSARQLFDE 258
           MI  Y    +L E   +F  M       + ++  +L+      G +++G L  A  L + 
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNG 358

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
               ++V  T  ID Y K GD+ SARS+F++   +D++ WSA+IS YAQN   DEA  IF
Sbjct: 359 FT-LSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIF 417

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMN 376
             M    ++P+E  +VSL+  C++ G+L++  W+ SY+ +  +   +  +I   + VDM 
Sbjct: 418 VHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGI---KGDMILKTSFVDMY 474

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           A CG++D A  LF    +RD+  + +MI G ++HGHG  A+ LF+ M + G+TP+++ F 
Sbjct: 475 ANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFI 534

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
             L ACSH GL+++G R F  M + +   P  EHY CMVDLLGR G L  A+EL+ SMP+
Sbjct: 535 GALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPM 594

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
            P+ + +G+ L ACKL+ +I+LGE  A +   LEP  +G  VL+SNIYA+A+RW DV  +
Sbjct: 595 RPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYI 654

Query: 557 RSKMKERGLRKIPGCSSL 574
           R  MK+ G+ K PG SS+
Sbjct: 655 RRAMKDEGIVKEPGVSSI 672



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 220/480 (45%), Gaps = 32/480 (6%)

Query: 65  LEQDHSLVAHFISLCHS------LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI 118
           L +   L  HFI    +      LA   SYS+         N  + + L+  Y +N+   
Sbjct: 56  LNETQQLHGHFIKTSSNCSYRVPLAALESYSS---------NAAIHSFLITSYIKNNCPA 106

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI 178
           +   I+  +   +   D +  P V+KAC  + S   G  +H  V++ G   DVFV  +LI
Sbjct: 107 DAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALI 166

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPER---SNV 234
            +Y +   ++ AR +FD++  ++VVSW+ MI  Y   G L EA  +  D+   R   S +
Sbjct: 167 MMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEI 226

Query: 235 SWNALIGGLVKIGDLRSARQLF------DEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
              ++   L ++ DL+  + +        +  +  V   T +ID Y K  ++  AR +F+
Sbjct: 227 GMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFD 286

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
                 +++W+A+I+ Y      +E V++F  M  + + P+E  ++SL+  C   G L+L
Sbjct: 287 GLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALEL 346

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
              + ++  R+   LS   +  A +DM  KCG++  A  +F++  ++D++ + +MI   +
Sbjct: 347 GKLLHAFTLRNGFTLSLV-LATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYA 405

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
            +    +A  +F  M   G+ P+E     +L  C+  G +E G ++  +  +   I    
Sbjct: 406 QNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDM 464

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
                 VD+    G + +A+ L  +   +   S W A++    ++   E     A  LFE
Sbjct: 465 ILKTSFVDMYANCGDIDTAHRLF-AEATDRDISMWNAMISGFAMHGHGE----AALELFE 519


>gi|357144887|ref|XP_003573448.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Brachypodium distachyon]
          Length = 530

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/401 (45%), Positives = 258/401 (64%), Gaps = 4/401 (0%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SL+    +  ++  AR +FD+MP R+VVSW +M+ G A  G L  A  +F  MPER+  
Sbjct: 126 NSLLASLLRSGDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDCAIELFHQMPERNAA 185

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR- 293
           SWNA++ GL+  G L  AR+ F++MP R+ VS+ TMI GYAK GD+ +A SLFE   ++ 
Sbjct: 186 SWNAVMCGLIAHGHLARAREWFEQMPVRSNVSWITMISGYAKAGDVQAAASLFERMENQN 245

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNW 351
           D+ AW+A+I+ Y QNG   EA+ +F  M   +  V P+E    S++SACSQ+GNL    W
Sbjct: 246 DLYAWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISACSQLGNLRFGLW 305

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           V+S++    ++L   H+  ALVD+  K G +D A +LF  +  RDVVSY +MI G  ++G
Sbjct: 306 VESFMCSLGIELDD-HLRTALVDLYTKSGRIDNAFKLFRGLRTRDVVSYSAMIVGCGMNG 364

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
              +A+ LF  M    + P+ V F  +L+A +H GL+E+    F  M + Y I PS EHY
Sbjct: 365 KLSEAIGLFKEMSDAKIVPNAVTFVGLLSAYNHAGLMEEARACFAFMSSKYNIRPSMEHY 424

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
             MVDLLGR+G L  A++L+  MP++PHAS WGALL AC+L++++ELGE+VA++ FEL P
Sbjct: 425 TIMVDLLGRSGKLDEAFQLIMKMPMQPHASVWGALLLACRLHTNVELGEMVASKCFELAP 484

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +G Y+LL NIYA A++W  V  +R  M E GL K+PG S
Sbjct: 485 GESGYYILLGNIYAQANKWDKVKSLRKTMMEMGLSKMPGSS 525



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 38/274 (13%)

Query: 89  STAVFNRIVNPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKA 145
           + ++F R+ N N  + WN ++  Y QN    E  ++F+R+++     +P++ TF  VI A
Sbjct: 234 AASLFERMENQNDLYAWNAMIACYGQNGCAREAISVFIRMLKPHICVLPNEKTFSSVISA 293

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS + ++R G  + + +   G++ D  + T+L+DLY K   I  A K+F  +  R+VVS+
Sbjct: 294 CSQLGNLRFGLWVESFMCSLGIELDDHLRTALVDLYTKSGRIDNAFKLFRGLRTRDVVSY 353

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           +AMIVG    G L EA  +F  M +   V                            N V
Sbjct: 354 SAMIVGCGMNGKLSEAIGLFKEMSDAKIVP---------------------------NAV 386

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR-----DVVAWSALISGYAQNGQPDEAVKIFSD 320
           ++  ++  Y   G M  AR+ F     +      +  ++ ++    ++G+ DEA ++   
Sbjct: 387 TFVGLLSAYNHAGLMEEARACFAFMSSKYNIRPSMEHYTIMVDLLGRSGKLDEAFQLIMK 446

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           M    +QP   +  +L+ AC    N++L   V S
Sbjct: 447 M---PMQPHASVWGALLLACRLHTNVELGEMVAS 477


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 308/547 (56%), Gaps = 49/547 (8%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP-LSYSTAVFNRIV 97
           S ++L++KCK    L Q+HSH IK GL  D       I+ C +  +  ++Y+  VF+ I 
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIP 68

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           +P+ F+WNT++KGYS+ S      ++++ ++     PD++TFP  +K  +  ++++ G  
Sbjct: 69  HPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKE 128

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +    ++ G D ++FV  + I ++     +  A KVFD      VV+W  M+ GY  V  
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQ 188

Query: 218 LVEAKT--VFDLMPERSNVSWNALI-----GGLVK-----IGDLRSARQLFDEMPERNVV 265
              +K   V     +  ++ W   I     GG+V+      G++  A+ +FD M  R+VV
Sbjct: 189 FKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVV 248

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+T MIDGY ++     A +LF                                +M   N
Sbjct: 249 SWTAMIDGYLRMNHFIGALALFR-------------------------------EMQMSN 277

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V+PDEF +VS++ AC+ +G L+L  WV + + ++  + + + V  ALVDM  KCGN+ +A
Sbjct: 278 VKPDEFTMVSILIACALLGALELGEWVKTCIDKNS-NKNDSFVGNALVDMYFKCGNVRKA 336

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            ++F+ M  +D  ++ +MI GL+I+GHG +A+++F  M+   +TPDE+ +  VL AC   
Sbjct: 337 KKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC--- 393

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
            +V+ G  FF  M   + I P+  HY CMVDLLG  G L+ A E++ +MPV+P++  WG+
Sbjct: 394 -MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGS 452

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
            LGAC+++ +++L ++ A ++ ELEP+N   YVLL NIYA + +W ++C VR  M ERG+
Sbjct: 453 PLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGI 512

Query: 566 RKIPGCS 572
           +K PGCS
Sbjct: 513 KKTPGCS 519


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 281/525 (53%), Gaps = 56/525 (10%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           WN+++  Y   S       +F ++  R    PD  +   ++ AC+ + +   G  +H   
Sbjct: 331 WNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFS 390

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           IR G+ +DVFVG +++D+Y K  ++  A KVF  M  ++VVSW AM+ GY+  G L  A 
Sbjct: 391 IRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHAL 450

Query: 223 TVFDLMPERS----NVSWNALIGGLVKIGD----LRSARQLFDEMPERNVVSYTTM---- 270
           ++F+ M E +     V+W A+I G  + G     L   RQ+ D     NVV+  ++    
Sbjct: 451 SLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSAC 510

Query: 271 ---------------------------------------IDGYAKVGDMTSARSLFEAA- 290
                                                  ID YAK      AR +F++  
Sbjct: 511 VSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVS 570

Query: 291 -PDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNVQPDEFILVSLMSACSQVGNLD 347
             DRDVV W+ +I GYAQ+G  + A+++FS M    K+++P++F L   + AC+++  L 
Sbjct: 571 PKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALR 630

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               V +Y+ R+        V   L+DM +K G++D A  +F+ MP R+ VS+ S++ G 
Sbjct: 631 FGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGY 690

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HG G  A+ +FD M    L PD + F +VL ACSH G+V+ G  FF  M   + + P 
Sbjct: 691 GMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPG 750

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
           PEHYACMVDL GR G L  A +L+N MP+EP    W ALL AC+L+S++ELGE  ANRL 
Sbjct: 751 PEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLL 810

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELE  N GSY LLSNIYA A RW DV  +R  MK  G++K PGCS
Sbjct: 811 ELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCS 855



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 148/536 (27%), Positives = 257/536 (47%), Gaps = 70/536 (13%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGL--EQDHSLVAHFISLCHSLATPLSYSTAV 92
           SC    +T +K+C    H   +H   I +GL      +L+  +I+     +   +Y+  +
Sbjct: 159 SCATIPITALKECNSLAHAKLLHQQSIMQGLLFHLATNLIGTYIA-----SNSTAYAILL 213

Query: 93  FNRIV-NPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
             R+  +P++ F WN L++         +VFT++ ++      PD YTFP V KAC+++ 
Sbjct: 214 LERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLS 273

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV---VSWTA 207
           S+  G ++HA V R G   +VFV  +++ +YGK   +  A  +FD++  R +   VSW +
Sbjct: 274 SLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNS 333

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVS-------------------------------- 235
           ++  Y    D   A  +F  M  R  +S                                
Sbjct: 334 VVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS 393

Query: 236 --------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
                    NA++    K G +  A ++F  M  ++VVS+  M+ GY++ G +  A SLF
Sbjct: 394 GLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLF 453

Query: 288 EAAPDR----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           E   +     DVV W+A+I+GYAQ GQ  EA+ +F  MC    +P+   LVSL+SAC  V
Sbjct: 454 ERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSV 513

Query: 344 GNLDLSNWVDSYLSRSHMDLSRA-------HVIAALVDMNAKCGNMDRAAELFETM--PN 394
           G L        Y  +  ++L           VI  L+DM AKC + + A ++F+++   +
Sbjct: 514 GALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKD 573

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRM--LSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           RDVV++  MI G + HG    A+ LF  M  + + + P++   +  L AC+ +  +  G 
Sbjct: 574 RDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGR 633

Query: 453 RFFE-AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +     ++N Y  V       C++D+  ++G + +A  + ++MP + +A +W +L+
Sbjct: 634 QVHAYVLRNFYGSVMLFV-ANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLM 687



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+++++         VA+ +   +S +  +  +  VF+ +   N   W +L+ GY  +
Sbjct: 634 QVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMH 693

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFV 173
            R  +   +F  + +   VPD  TF +V+ ACSH   V  G      + + +GVD     
Sbjct: 694 GRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEH 753

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
              ++DL+G+   +  A K+ +EMP E   V W A++
Sbjct: 754 YACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALL 790


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 285/539 (52%), Gaps = 54/539 (10%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            H  A  +  +  +F  +   +T  +N +L GY+ N R     + F  + R    PD ++
Sbjct: 44  AHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPR----PDSFS 99

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  ++    H L V    A   A+      +D      +I  +     +S AR  FD  P
Sbjct: 100 YNTLL----HALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAP 155

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           E++ VSW  M+  Y   G + EA+ +FD   E   +SWNAL+ G V+   +  A+++F+ 
Sbjct: 156 EKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNR 215

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           MP+R+VVS+ TM+ G+A+ GDM  AR LF+ AP RDV  W+A++SGYAQNG  +EA ++F
Sbjct: 216 MPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVF 275

Query: 319 SDMCSKNVQPDEFILV---------------------------SLMSACSQVGNLDLSNW 351
             M  KN      ++                            ++++  +Q G LD +  
Sbjct: 276 DAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARA 335

Query: 352 VDSYLSRSHMDLSRAHVIAALVD------------------MNAKCGNMDRAAELFETMP 393
           +   + +    +S A ++AA                     M  KCGNM+ A   FE M 
Sbjct: 336 IFDMMPQKDA-VSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEME 394

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            RD+VS+ +MI G + HG G++A+ +FD M      PD++    VL ACSH GLVE G  
Sbjct: 395 ERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGIS 454

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           +F +M   + +   PEHY CM+DLLGR G L  A  L+  MP EP ++ WGALLGA +++
Sbjct: 455 YFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIH 514

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            + ELG   A ++FELEP+NAG YVLLSNIYA++ +W DV  +R  M ERG++K+PG S
Sbjct: 515 RNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFS 573



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 179/371 (48%), Gaps = 27/371 (7%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           ++A +   S R   A   A I    D +V      I  + +   +  A ++F  M  R+ 
Sbjct: 7   LRAAARQRSHRRPAAPADACITGKPDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRST 66

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
            ++ AM+ GYA+ G L  A + F  +P   + S+N L+  L     L  AR LFDEMP +
Sbjct: 67  STYNAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVK 126

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           + VSY  MI  +A  G ++ AR  F+ AP++D V+W+ +++ Y +NG+  EA  +F    
Sbjct: 127 DSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLF---- 182

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCG 380
               + D     +LM+   Q   ++ +       +R    + +  V++   +V  +A+ G
Sbjct: 183 DSRTEWDAISWNALMAGYVQCSQIEEAQ---KMFNR----MPQRDVVSWNTMVSGHARRG 235

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +M  A  LF+  P RDV ++ +++ G + +G   +A  +FD M  +    + V++  ++ 
Sbjct: 236 DMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEK----NAVSWNAMMA 291

Query: 441 ACSHVGLVEDGWRFFEAM--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           A     ++E+    F+AM  +NV +       +  M+    + G L  A  + + MP + 
Sbjct: 292 AYVQRRMMEEAKELFDAMPCRNVAS-------WNTMLTGYAQAGMLDEARAIFDMMP-QK 343

Query: 499 HASAWGALLGA 509
            A +W A+L A
Sbjct: 344 DAVSWAAMLAA 354


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 304/526 (57%), Gaps = 11/526 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH  I+K G   D  +    + + ++    +  S +VF+  ++ N F W++++ GY QN
Sbjct: 124 KVHCQIVKFG-NPDSFVFTGLVDM-YAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQN 181

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           +   +   +F R+  E    ++ T  +++ AC  + ++ +G  +H  +I+ G++   ++ 
Sbjct: 182 NLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLV 241

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           T+L+DLY K   +  AR VFDE+   ++VSWTAMIVGY   G   EA  +F L  E+   
Sbjct: 242 TALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLF-LQKEQVAV 300

Query: 232 --SNVSWNALIGGLVKIGDL---RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
             ++V+  ++     ++ +L   RS   L  ++  R+ +   +++D YAK      AR +
Sbjct: 301 LPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYV 360

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE   DRDVVAW+++IS ++QNG   EA+++F  M   +V PD   LVS++SAC+ +  L
Sbjct: 361 FETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNAL 420

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            + +   +Y  +  +  S  +V  AL+   AKCG+ + A  +F+ M  +  V++ +MI G
Sbjct: 421 QVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISG 480

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
             I G+GR ++S+F  ML   L P+E  FT +L+ACSH G++ +GWR F  +   Y +VP
Sbjct: 481 YGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVP 540

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           S +HY CMVDLL R G LK A + +  MPV+P  S +GA L  C L+S  +LGEL   R+
Sbjct: 541 STKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRM 600

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            EL P +A  YVL+ N+YA+  RW  V  VR  MK+RGL K PGCS
Sbjct: 601 LELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCS 646



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 255/503 (50%), Gaps = 37/503 (7%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
           C     L ++H++++ +GL +D S     +SL  S    L  +  VF+ I +P+   W  
Sbjct: 15  CDNINTLMEMHAYLVVQGLTRDLSCSTKLVSLYGSFGR-LDLARLVFDTIPHPDFLSWKV 73

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +++ Y  NS F ++   + R+       D   F  V+KACS   +  EG  +H  ++++G
Sbjct: 74  IIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG 133

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
            + D FV T L+D+Y K  EI C+R VFDE  +RNV SW++MI GY       +   +F+
Sbjct: 134 -NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFN 192

Query: 227 LMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SY--TTMIDGYAKVG 278
            M E     + ++   L+    K+G L   + L   + +  +   SY  T ++D YAK G
Sbjct: 193 RMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCG 252

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  ARS+F+     D+V+W+A+I GY QNG P+EA+K+F       V P++  + S+ S
Sbjct: 253 VVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFS 312

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAE-LFETMPNRD 396
           +CSQ+ NL+L   +     +     SR  ++  +LVD  AKC  M+R A  +FET+ +RD
Sbjct: 313 SCSQLLNLNLGRSIHGLSIKLG---SRDPIVTNSLVDFYAKC-QMNRDARYVFETISDRD 368

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VV++ S+I   S +G   +A+ LF +M    + PD V    VL+AC+ +  ++ G  F  
Sbjct: 369 VVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSF-- 426

Query: 457 AMQNVYAI---VPSPEHY--ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL---- 507
              + YA+   + S   Y    ++    + G  +SA  + + M  +     W A++    
Sbjct: 427 ---HAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMD-QKSTVTWSAMISGYG 482

Query: 508 ------GACKLYSDIELGELVAN 524
                 G+  ++ D+   EL  N
Sbjct: 483 IQGNGRGSLSIFGDMLKAELKPN 505


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 286/509 (56%), Gaps = 37/509 (7%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           + FLWN ++K +S      +   +   +I      DK++  LV KACS +   +EG  IH
Sbjct: 49  DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             + +  +  D+F+   LI LY K   +  AR+VFD MP+R+ VS+ +MI GY   G + 
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168

Query: 220 EAKTVFDLMP----------------------------------ERSNVSWNALIGGLVK 245
            A+ +FDLMP                                  E+  +SWN+LI G VK
Sbjct: 169 SARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVK 228

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G +  A+ LFD MP R+VV++ TMIDGYAK+G +  A+SLF+  P RDVVA+++++ GY
Sbjct: 229 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGY 288

Query: 306 AQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
            QN    EA+++F DM  + ++ PDE  LV ++SA +Q+G L  +  +  Y+      L 
Sbjct: 289 VQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLD 348

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              +  AL+DM +KCG++ +A  +FE + N+ +  + +MI GL++HG G  A  +   + 
Sbjct: 349 -GKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIE 407

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
              + PD + F  VL ACSH GLV++G   FE M+  + I P  +HY CMVDLL R+G +
Sbjct: 408 KRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSI 467

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL-VANRLFELEPQNAGSYVLLSNI 543
           + A  L++ MP+EP+   W   L AC  + + E  EL VA  L      N  SYVLLSN+
Sbjct: 468 ELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNM 527

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YA+ + W DV  VR+ MKER + K+PGCS
Sbjct: 528 YASFEMWEDVRRVRTMMKERKIEKVPGCS 556



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 123/267 (46%), Gaps = 19/267 (7%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACS 147
           + ++F+ + + +   +N+++ GY QN   +E   +F  + +E  + PD+ T  +V+ A +
Sbjct: 266 AKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIA 325

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +  + +   IH  ++      D  +G +LID+Y K   I  A  VF+ +  +++  W A
Sbjct: 326 QLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNA 385

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSN-------VSWNALIGGLVKIGDLRSARQLFDEMP 260
           MI G A  G L EA   FD++ E          +++  ++      G ++     F+ M 
Sbjct: 386 MIGGLAVHG-LGEA--AFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMR 442

Query: 261 ERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD-- 312
            ++ +      Y  M+D  A+ G +  A+ L    P + + V W   ++  + + + +  
Sbjct: 443 RKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETR 502

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSA 339
           E V   + +      P  ++L+S M A
Sbjct: 503 ELVVAENLILQAGYNPSSYVLLSNMYA 529



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    +H +I++K    D  L    I + +S    +  + A
Sbjct: 312 PDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDM-YSKCGSIQQAMA 370

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  I N +   WN ++ G + +      F + + + +    PD  TF  V+ ACSH   
Sbjct: 371 VFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGL 430

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++DL  +   I  A+ +  EMP E N V W   +
Sbjct: 431 VKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFL 490


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 183/530 (34%), Positives = 293/530 (55%), Gaps = 64/530 (12%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTF 102
           +  C     L Q HS II+ GL  D+  +   I  C  S +  L+Y+  VF++I +P+ +
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAY 86

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           ++NT+ +GY +         ++ R++ +   P+K+T+P +               I A  
Sbjct: 87  IYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPL---------------IRACC 131

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I + ++E            GK+                  +    +  G+ + G      
Sbjct: 132 IDYAIEE------------GKQ------------------IHAHVLKFGFGADG------ 155

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
                       S N LI   V    L  AR++FD MP+R+VVS+T++I GY++ G +  
Sbjct: 156 -----------FSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDK 204

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR +FE  P+R+ V+W+A+I+ Y Q+ +  EA  +F  M  +NV  D+F+  S++SAC+ 
Sbjct: 205 AREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTG 264

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L+   W+  Y+ +S ++L  + +   ++DM  KCG +++A+E+F  +P + + S+  
Sbjct: 265 LGALEQGKWIHGYIEKSGIELD-SKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNC 323

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI GL++HG G  A+ LF  M  E + PD + F  VL+AC+H GLVE+G  +F+ M  V 
Sbjct: 324 MIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVL 383

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            + P  EH+ CMVDLLGR G L+ A +L+N MPV P A   GAL+GAC+++ + ELGE +
Sbjct: 384 GLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQI 443

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             ++ ELEP N+G YVLL+N+YA+A RW DV  VR  M +RG++K PG S
Sbjct: 444 GKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFS 493


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/445 (40%), Positives = 265/445 (59%), Gaps = 3/445 (0%)

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           R    PD YTFP V+KAC      R G  +H   +R G+D D+F   +LI  Y +  +  
Sbjct: 3   RAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCR 62

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-G 247
             RKVFD    R++VSW +M+ GY   G++  A+ +FD M +R   SW  +I G  ++ G
Sbjct: 63  SGRKVFDH-GVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAG 121

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            +  AR+LFD+MP+R++V + +MIDGYA+ G M  AR LFE  P+R+V++WS +I GY +
Sbjct: 122 GVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVR 181

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
            G+P+EA++ F  M    ++PD    V  ++AC+Q+G L+   W+ SYL +  + L    
Sbjct: 182 FGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVV 240

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  AL+DM  KCG +D A  +FE+MP + VV++  MI GL  HG+G  A+ LF++M +E 
Sbjct: 241 VQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETER 300

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
              D+++   VLT+C+H GLV +G   F  M+    + P  EHY  ++DLLGR G +  A
Sbjct: 301 APMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQA 360

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
              + +MP+EP    WG+LL +C+ +  +EL EL   RL  L   ++G YVLLSNIYA  
Sbjct: 361 RNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADE 420

Query: 548 DRWLDVCLVRSKMKERGLRKIPGCS 572
             W DV  +R  M   G++K  G S
Sbjct: 421 GMWDDVFRIRKLMSAEGMKKNIGRS 445



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 150/342 (43%), Gaps = 69/342 (20%)

Query: 69  HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS----RFIEVFTIF 124
           +S+VA ++         +  +  +F+ +   + F W T++ GY + +    R  E+F   
Sbjct: 79  NSMVAGYVG-----CGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELF--- 130

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184
                 + +PD+                                 D+    S+ID Y + 
Sbjct: 131 ------DQMPDR---------------------------------DLVCWNSMIDGYARH 151

Query: 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNA 238
             +  AR +F+EMPERNV+SW+ +I GY   G+  EA   F  M      P+R       
Sbjct: 152 GRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAV 211

Query: 239 LIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
                 ++G L   R L   + ++    +VV  T +ID Y K G +  A+ +FE+ P + 
Sbjct: 212 AA--CAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKS 269

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VV W+ +I G   +G   +A+K+F+ M ++    D+  +++++++C+  G   L +    
Sbjct: 270 VVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAG---LVSEGLG 326

Query: 355 YLSRSHMDLS---RAHVIAALVDMNAKCGNMDRAAELFETMP 393
              R   DL    +     AL+D+  + G +D+A    ETMP
Sbjct: 327 IFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMP 368


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 309/562 (54%), Gaps = 36/562 (6%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           + L+L+ KCK    L ++H  I+     +    ++  I  C  S    ++Y+  V  +I 
Sbjct: 6   TILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIH 65

Query: 98  NPNTFLWNTLLKGY--SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           NP+ ++WN++++G+  S N R      ++ ++I     PD +TFP V+KAC  +     G
Sbjct: 66  NPSVYIWNSMIRGFVNSHNPRM--SMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCG 123

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH+ +++ G + D +  T L+ +Y    ++    KVFD +P+ NVV+WT +I GY   
Sbjct: 124 KCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKN 183

Query: 216 GDLVEAKTVFDLMPERSNVSWN------ALIGGLVKIG---DLRSARQL----------- 255
               EA  VF+ M       WN       ++  L+      D+ + R +           
Sbjct: 184 NQPYEALKVFEDMSH-----WNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDP 238

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
           F      N++  T +++ YAK G +  AR LF   P R++V+W+++I+ Y Q  +  EA+
Sbjct: 239 FMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEAL 298

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALV 373
            +F DM +  V PD+   +S++S C+    L L   V +YL ++ +  D+S A    AL+
Sbjct: 299 DLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLA---TALL 355

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDE 432
           DM AK G +  A ++F ++  +DVV + SMI GL++HGHG +A+S+F  M  +  L PD 
Sbjct: 356 DMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDH 415

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + +  VL ACSHVGLVE+  + F  M  +Y +VP  EHY CMVDLL R GH + A  L+ 
Sbjct: 416 ITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLME 475

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           +M V+P+ + WGALL  C+++ ++ +   V  RL ELEP  +G ++LLSNIYA A RW +
Sbjct: 476 TMTVQPNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEE 535

Query: 553 VCLVRSKMKERGLRKIPGCSSL 574
           V + R  MK + + K  G SS+
Sbjct: 536 VNVTRKVMKHKRITKTIGHSSV 557


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 314/542 (57%), Gaps = 14/542 (2%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+++C     L Q   VH+ I+K G++ +  L    +S+ ++    L+ +  VF+ I + 
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSM-YAKCGSLTDARRVFDSIRDR 111

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   W  +++ +   ++ +E F  +  +      PDK TF  ++ A ++   ++ G  +H
Sbjct: 112 NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             ++  G++ +  VGTSL+ +Y K  +IS AR +FD +PE+NVV+WT +I GYA  G + 
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVD 231

Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMI 271
            A  + + M +     + +++ +++ G      L   +++   + +    R +    ++I
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             Y K G +  AR LF   P RDVV W+A+++GYAQ G  DEA+ +F  M  + ++PD+ 
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              S++++CS    L     +   L  +  +L   ++ +ALV M AKCG+MD A+ +F  
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD-VYLQSALVSMYAKCGSMDDASLVFNQ 410

Query: 392 MPNRDVVSYCSMIKGL-SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
           M  R+VV++ ++I G  + HG  R+A+  FD+M  +G+ PD+V FT VL+AC+HVGLVE+
Sbjct: 411 MSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEE 470

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G + F +M   Y I P  EHY+C VDLLGR GHL+ A  ++ SMP  P  S WGALL AC
Sbjct: 471 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSAC 530

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++SD+E GE  A  + +L+P + G+YV LS+IYA A R+ D   VR  M++R + K PG
Sbjct: 531 RVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPG 590

Query: 571 CS 572
            S
Sbjct: 591 QS 592


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 302/527 (57%), Gaps = 11/527 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ +I  G      L  H +++ +S    L ++  +F+ +   N   W  ++ G SQN
Sbjct: 26  QLHALLICAGYTPCTFLTNHLVNM-YSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           S+F E    F  +     VP ++ F   I+AC+ + S+  G  +H   +++G+  ++FVG
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-PERSN 233
           ++L D+Y K   +  A KVF+EMP ++ VSWTAMI GY+ +G+  EA   F  M  E   
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 234 VSWNALIGGLVKIGDLRSAR-------QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           +  + L   L   G L++ +        +     E ++     + D Y+K GDM SA ++
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 287 FEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           F    + R+VV+++ LI GY +  Q ++ + +F ++  + ++P+EF   SL+ AC+    
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+    + + + + + D     V + LVDM  KCG ++ A + F+ + +   +++ S++ 
Sbjct: 325 LEQGTQLHAQVMKINFD-EDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVS 383

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
               HG G+ A+  F+RM+  G+ P+ + F  +LT CSH GLVE+G  +F +M   Y +V
Sbjct: 384 VFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVV 443

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHY+C++DLLGR G LK A E +N MP EP+A  W + LGAC+++ D E+G+L A +
Sbjct: 444 PGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEK 503

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L +LEP+N+G+ VLLSNIYA   +W DV  VR +M++  ++K+PG S
Sbjct: 504 LVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 550



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 186/382 (48%), Gaps = 12/382 (3%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D      VI+  +    +R G  +HA +I  G     F+   L+++Y K  E+  A K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLR 250
           D MP+RN+VSWTAMI G +      EA   F  M     V    ++++ I     +G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 251 SARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             +Q+     +  + S     + + D Y+K G M  A  +FE  P +D V+W+A+I GY+
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           + G+ +EA+  F  M  + V  D+ +L S + AC  +        V S + +   + S  
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-SDI 242

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            V  AL DM +K G+M+ A+ +F      R+VVSY  +I G        + +S+F  +  
Sbjct: 243 FVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 302

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
           +G+ P+E  F+ ++ AC++   +E G +    +  +      P   + +VD+ G+ G L+
Sbjct: 303 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI-NFDEDPFVSSILVDMYGKCGLLE 361

Query: 486 SAYELLNSMPVEPHASAWGALL 507
            A +  + +  +P   AW +L+
Sbjct: 362 HAIQAFDEIG-DPTEIAWNSLV 382


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/550 (34%), Positives = 315/550 (57%), Gaps = 21/550 (3%)

Query: 36  CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC--HSLATPLSYSTAVF 93
           CLLS    ++KC   + L Q+H+ +++  L  D    +  ++ C  H   + L Y+  VF
Sbjct: 43  CLLS----LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGS-LPYARLVF 97

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           N+I NP TF  N++++GY+  +   +    +  ++ +   PD++TFP + K+C  VL   
Sbjct: 98  NQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG-VLC-- 154

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           EG  +H    + G   D ++  +L+++Y     +  ARKVFD+M  ++VVSW  MI  YA
Sbjct: 155 EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNAL-----IGGLVKIGDLRSARQLFDEMPERNVVSYT 268
                 EA  +F  M E ++V  N +     +    +  DL +A+Q+   + E  +  +T
Sbjct: 215 QWDLPHEAIKLFRRM-EIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHT 273

Query: 269 TM----IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
            +    +D Y K G    AR LF   P++++  W+ +I+G+ ++   +EA+ +F++M   
Sbjct: 274 VLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 333

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+ D+  + SL+ AC+ +G L+L  W+  Y+ +  +++  A +  ALVDM AKCG+++ 
Sbjct: 334 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVA-LGTALVDMYAKCGSIES 392

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F+ MP +DV+++ ++I GL++ G G +A+ LF  M    + PD + F  VL ACSH
Sbjct: 393 AMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 452

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GLV +G  +F +M N Y I PS EHY CMVD+LGR G +  A +L+ +MP+ P      
Sbjct: 453 AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLV 512

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
            LL AC+++ ++ + E  A +L EL+P+N G+YVLLSNIY++   W     +R  M ER 
Sbjct: 513 GLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERN 572

Query: 565 LRKIPGCSSL 574
           ++K PGCS++
Sbjct: 573 IKKPPGCSAI 582


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 194/526 (36%), Positives = 305/526 (57%), Gaps = 36/526 (6%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           L  +H+ II  GL  +   +   IS C    A  L Y+  +F++I  PN F++N+L++GY
Sbjct: 4   LKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGY 63

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           S +   I+   +F R+I     P+++T P V+KAC    +  E   +H   I+ G+   V
Sbjct: 64  SNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLV 123

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPER---NVVSWTAMIVGYASVGDLVEAKTVFDLM 228
           FV  +LI +Y     I CARK+FD++ ++   +++   A++  YA  G+L  A+ +FD  
Sbjct: 124 FVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRT 183

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
            E++ VSW ++I    + G +  ARQ+FD+MP +NVVS+ +MI                 
Sbjct: 184 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMI----------------- 226

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
                         S Y + GQ  EA+ +F+ M +  V PDE  LVS+++ACSQ+G+L +
Sbjct: 227 --------------SCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVM 272

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
              + +Y+  S+       +  +L+DM AKCG +  A ++F  MP +++VS+  +I  L+
Sbjct: 273 GKKIHNYI-LSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALA 331

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
           +HG G +A+ LF+ M ++G  PDE+  T +L+ACSH GLV+ G  +F+ M  +Y +    
Sbjct: 332 LHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREI 391

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           EHYACMVDLLGR G L  A EL+  MP++P    WGALLGAC+++ ++E+G+ +  +L E
Sbjct: 392 EHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLE 451

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LEP + G YVL+SNIY  A RW DV  +R  M +RG++K    SS+
Sbjct: 452 LEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSI 497


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 280/518 (54%), Gaps = 45/518 (8%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN   W  L+ G  QN    E  ++F +++ E   P+  T    + AC+++  +R G  I
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 159 HAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           H   I+   +D D+ VG SL+D Y K + +  AR+ F  + + ++VSW AM+ GYA  G 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 218 LVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
             EA  +   M     E   ++WN L+ G  + GD ++A + F  M    +   TT I G
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 274 ---------------------------------------YAKVGDMTSARSLFEAAPDRD 294
                                                  Y+    +  A S+F     RD
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VV W+++IS  AQ+G+   A+ +  +M   NV+ +   +VS + ACS++  L     +  
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQ 624

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           ++ R  +D     ++ +L+DM  +CG++ ++  +F+ MP RD+VS+  MI    +HG G 
Sbjct: 625 FIIRCGLDTCN-FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGM 683

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            AV+LF +  + GL P+ + FT +L+ACSH GL+E+GW++F+ M+  YA+ P+ E YACM
Sbjct: 684 DAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACM 743

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLL R G      E +  MP EP+A+ WG+LLGAC+++ + +L E  A  LFELEPQ++
Sbjct: 744 VDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSS 803

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+YVL++NIY+ A RW D   +R  MKERG+ K PGCS
Sbjct: 804 GNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCS 841



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/536 (23%), Positives = 239/536 (44%), Gaps = 68/536 (12%)

Query: 36  CLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           C+    ++++KC+   +L    QVH+ ++  G++    L +  + + +     +  +  +
Sbjct: 88  CIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEV-YCQTGCVEDARRM 146

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+++   N F W  +++ Y     + E   +F  ++ E   PD + FP V KACS + + 
Sbjct: 147 FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 206

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           R G  ++  ++  G + +  V  S++D++ K   +  AR+ F+E+  ++V  W  M+ GY
Sbjct: 207 RVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY 266

Query: 213 ASVGDLVEA-KTVFDLM---PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
            S G+  +A K + D+     +   V+WNA+I G  + G    A + F EM         
Sbjct: 267 TSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMG-------- 318

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
                            L +  P+  VV+W+ALI+G  QNG   EA+ +F  M  + V+P
Sbjct: 319 ----------------GLKDFKPN--VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +   + S +SAC+ +  L     +  Y  +     S   V  +LVD  AKC +++ A   
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  +   D+VS+ +M+ G ++ G   +A+ L   M  +G+ PD + +  ++T  +  G  
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           +    FF+ M                                 +SM ++P+ +     L 
Sbjct: 481 KAALEFFQRM---------------------------------HSMGMDPNTTTISGALA 507

Query: 509 ACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           AC    +++LG+ +   +     + + G    L ++Y+  D     C V S++  R
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 16/309 (5%)

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           + P+   WN L+ G++Q          F R+      P+  T    + AC  V +++ G 
Sbjct: 460 IEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IH  V+R  ++    VG++LI +Y     +  A  VF E+  R+VV W ++I   A  G
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG 579

Query: 217 DLVEAKTVFDLMPER--SNVSWNAL-----IGGLVKIGDLRSARQLFDEMPERNVVS--- 266
             V A    DL+ E   SNV  N +     +    K+  LR  +++   +    + +   
Sbjct: 580 RSVNA---LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNF 636

Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
              ++ID Y + G +  +R +F+  P RD+V+W+ +IS Y  +G   +AV +F    +  
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG 696

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA-HVIAALVDMNAKCGNMDR 384
           ++P+     +L+SACS  G ++   W    + ++   +  A    A +VD+ ++ G  + 
Sbjct: 697 LKPNHITFTNLLSACSHSGLIE-EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 385 AAELFETMP 393
             E  E MP
Sbjct: 756 TLEFIEKMP 764



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 164/367 (44%), Gaps = 43/367 (11%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           L+A   ++  KL     ++H ++++  +E    + +  IS+ +S    L  + +VF+ + 
Sbjct: 506 LAACGQVRNLKLG---KEIHGYVLRNHIELSTGVGSALISM-YSGCDSLEVACSVFSELS 561

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
             +  +WN+++   +Q+ R +    +   +       +  T    + ACS + ++R+G  
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 621

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH  +IR G+D   F+  SLID+YG+   I  +R++FD MP+R++VSW  MI  Y   G 
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-NVVSYTTMIDGYAK 276
            ++A  +F                            Q F  M  + N +++T ++   + 
Sbjct: 682 GMDAVNLF----------------------------QQFRTMGLKPNHITFTNLLSACSH 713

Query: 277 VGDMTSARSLF-----EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            G +      F     E A D  V  ++ ++   ++ GQ +E ++    M     +P+  
Sbjct: 714 SGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM---PFEPNAA 770

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
           +  SL+ AC    N DL+ +   YL       S  +V+ A  ++ +  G  + AA++   
Sbjct: 771 VWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMA--NIYSAAGRWEDAAKIRCL 828

Query: 392 MPNRDVV 398
           M  R V 
Sbjct: 829 MKERGVT 835


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 298/529 (56%), Gaps = 34/529 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++LI  CK    L  VH+ I+++G+    S VA  +  C SL     YS ++F      N
Sbjct: 33  ISLIHACKDTASLRHVHAQILRRGVLS--SRVAAQLVSCSSLLKSPDYSLSIFRNSEERN 90

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F+ N L++G ++N+RF      F+ ++R    PD+ TFP V+K+ S +     G A+HA
Sbjct: 91  PFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHA 150

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
           A ++  VD D FV  SL+D+Y K  ++  A +VF+E P+R                    
Sbjct: 151 ATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDR-------------------- 190

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                  + + S + WN LI G  +  D+  A  LF  MPERN  S++T+I GY   G++
Sbjct: 191 -------IKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGEL 243

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A+ LFE  P+++VV+W+ LI+G++Q G  + A+  + +M  K ++P+E+ + +++SAC
Sbjct: 244 NRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           S+ G L     +  Y+  + + L RA +  ALVDM AKCG +D AA +F  M ++D++S+
Sbjct: 304 SKSGALGSGIRIHGYILDNGIKLDRA-IGTALVDMYAKCGELDCAATVFSNMNHKDILSW 362

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI+G ++HG   QA+  F +M+  G  PDEV F  VLTAC +   V+ G  FF++M+ 
Sbjct: 363 TAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRL 422

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            YAI P+ +HY  +VDLLGR G L  A+EL+ +MP+ P  + W AL  ACK +      E
Sbjct: 423 DYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAE 482

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDV----CLVRSKMKERGL 565
            V+  L EL+P+  GSY+ L   +A+     DV      ++ ++KER L
Sbjct: 483 SVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSL 531



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 112/274 (40%), Gaps = 37/274 (13%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           +   PDE   +SL+ AC    +L     V + + R  +  SR  V A LV  ++   + D
Sbjct: 23  RQASPDESHFISLIHACKDTASL---RHVHAQILRRGVLSSR--VAAQLVSCSSLLKSPD 77

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            +  +F     R+     ++I+GL+ +     +V  F  ML  G+ PD + F  VL + S
Sbjct: 78  YSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNS 137

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA- 502
            +G    G     A    +    S    + +VD+  +TG LK A+++    P      + 
Sbjct: 138 KLGFRWLGRALHAATLKNFVDCDSFVRLS-LVDMYAKTGQLKHAFQVFEESPDRIKKESI 196

Query: 503 --WGALL-GACK-------------------------LYSDIELGEL-VANRLFELEPQ- 532
             W  L+ G C+                         +   ++ GEL  A +LFEL P+ 
Sbjct: 197 LIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEK 256

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           N  S+  L N ++    +        +M E+GL+
Sbjct: 257 NVVSWTTLINGFSQTGDYETAISTYFEMLEKGLK 290


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 297/563 (52%), Gaps = 48/563 (8%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++   +  D+ L +  IS  +S +  +  +  VF +I   N F WN L   Y+ +
Sbjct: 24  QLHARLVLSSVVPDNFLGSKLISF-YSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLH 82

Query: 115 SRFIEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTA--IHAAVIRWGVDE 169
           +   ++  +F  L+   +    PD++T    +KA + + S   G A  +H+ ++R G++ 
Sbjct: 83  NMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFS-NSGLAKEVHSFILRRGLEY 141

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D+FV  +LI  Y +  E+  AR +FD MPER+ VSW AM+ GY+  G   E K +F +M 
Sbjct: 142 DIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVML 201

Query: 230 ERSNVS----------------------------------------WNALIGGLVKIGDL 249
               V                                         WNA+IG   K G L
Sbjct: 202 SSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGIL 261

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             AR+LF+EMPE++ ++Y +MI GY   G +  A  LF       +  W+A+ISG  QN 
Sbjct: 262 DYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNN 321

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           + + AV IF  M S   +P+   L S++   S    L     +  Y  R+  D    +V 
Sbjct: 322 RQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYD-RNIYVA 380

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            A++D  AKCG +  A  +F+ +  R ++++ S+I   ++HG    A+SLF  ML+ G+ 
Sbjct: 381 TAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ 440

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD+V FT VL AC+H G +++ W+ F  +   Y I P  EHYACMV +L R G L  A E
Sbjct: 441 PDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVE 500

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            ++ MP+EP A  WGALL    +  D+ELG+ V +RLFE+EP+N G+YV+++N+Y+ + R
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGR 560

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W D   +R  MKE  L+KIPG S
Sbjct: 561 WKDADTIRDLMKEVRLKKIPGNS 583



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 176/365 (48%), Gaps = 25/365 (6%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +I+ C+  L  R G  +HA ++   V  D F+G+ LI  Y K   I  A  VF ++P +N
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 202 VVSWTAMIVGYA----------SVGDLVEAKTVFDLMPERSNV--SWNALIGGLVKIGDL 249
           + SW A+ + Y               LV + +  D+ P+R  V  S  AL       G  
Sbjct: 69  IFSWNALFISYTLHNMHTDLLKLFSSLVNSNST-DVKPDRFTVTCSLKALASLFSNSGLA 127

Query: 250 RSARQ-LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           +     +     E ++     +I  Y++  ++  AR +F+  P+RD V+W+A+++GY+Q 
Sbjct: 128 KEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQG 187

Query: 309 GQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH--MDLSR 365
           G  +E  ++F  M S   V+P+    VS++ AC+Q  +L     V  +++ S   MD+S 
Sbjct: 188 GSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVS- 246

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             +  A++ + AKCG +D A ELFE MP +D ++YCSMI G  +HG   QA+ LF     
Sbjct: 247 --LWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLF----R 300

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
           E   P    +  V++        E     F AMQ+ +   P+    A ++ +      LK
Sbjct: 301 EQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQS-HGCRPNTVTLASILPVFSHFSTLK 359

Query: 486 SAYEL 490
              E+
Sbjct: 360 GGKEI 364


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 312/597 (52%), Gaps = 56/597 (9%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA-------T 84
           P   C L A+   +       L Q+H+H++  GL    S       L  +LA       +
Sbjct: 3   PPSLCPLLAILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHS 62

Query: 85  PLSYSTAVFNRIVNP----NTFLWNTLLKGYS---QNSRFIEVFTIFVRLIREEAVPDKY 137
           P     A+      P    +   +N  L+  S             ++  L+R  A PD  
Sbjct: 63  PRPLLHALALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRS-ARPDHL 121

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TFP ++KAC+ +     G A+   V+  G   DVFV  + +        ++ ARK+FD  
Sbjct: 122 TFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGS 181

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS---------------------- 235
             R++VSW  +I GY   G   EA  +F  M     V+                      
Sbjct: 182 HVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELG 241

Query: 236 ------------------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
                              N ++   +K GDL  A+ +F+ + ++ +VS+TTMI GYA+ 
Sbjct: 242 RRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQF 301

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G M  AR +F+  P+RDV  W+AL++GY Q  +  EA+++F DM    V+PD+  +V+L+
Sbjct: 302 GLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLL 361

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           SACSQ+G L++  WV  Y+ R  + LS   +   LVDM +KCGN+++A  +F+ +P ++ 
Sbjct: 362 SACSQLGALEMGMWVHHYIDRRRVSLS-VMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNA 420

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           +++ +MI GL+ HGH   A+  F RM+  GL PDE+ F  VL+AC H GLV++G  FF  
Sbjct: 421 LTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSL 480

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M + Y +    +HY+CMVDLLGR G+L  A  L+N+MP+EP A  WGAL  AC+++ +I 
Sbjct: 481 MVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNIT 540

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LGE  A +L EL+P ++G YVLL+N+YA A+       VR  M+  G+ K+PGCS +
Sbjct: 541 LGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCI 597


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 310/584 (53%), Gaps = 49/584 (8%)

Query: 38  LSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++ L+++K C   + L    ++H+ +   G+E D ++    I++ +S    +S +  +F 
Sbjct: 180 ITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITM-YSKCGEISLACEIFQ 238

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           ++   N   W  +++  +Q+ +  E F ++ ++++    P+  TF  ++ +C+   ++  
Sbjct: 239 KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNR 298

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH+ +   G++ DV V  +LI +Y K   I  AR+ FD M +R+V+SW+AMI GYA 
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358

Query: 215 VG--DLVEAKTVFDLM-----------------------------------PERSNVSW- 236
            G  D      VF L+                                    E S V + 
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418

Query: 237 ------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                  A+     K G +  A Q+F +M  +NVV++ +++  Y K GD+TSA  +F   
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEM 478

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
             R+VV+W+ +I+GYAQ+G   +  ++ S M  +  QPD   ++S++ AC  +  L+   
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGK 538

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            V +   +  ++ S   V  +L+ M +KCG +  A  +F+ + NRD V++ +M+ G   H
Sbjct: 539 LVHAEAVKLGLE-SDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G +AV LF RML E + P+E+ FT V++AC   GLV++G   F  MQ  + + P  +H
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y CMVDLLGR G L+ A E +  MP EP  S W ALLGACK + +++L E  A+ +  LE
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           P NA  YV LSNIYA A RW D   VR  M ++GL+K  G SS+
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSI 761



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 205/439 (46%), Gaps = 44/439 (10%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  + + GL  D  L    I+  +S    ++    VF R+   +   W++++  Y+ N+
Sbjct: 100 VHKQLDELGLAIDIYLGNSLINF-YSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNN 158

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              + F  F R+      P++ TF  ++KAC++   + +   IH  V   G++ DV V T
Sbjct: 159 HPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVAT 218

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +LI +Y K  EIS A ++F +M ERNVVSWTA+I   A    L EA  +++ M +     
Sbjct: 219 ALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISP 278

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLF 287
           + V++ +L+        L   R++   + ER    +VV    +I  Y K   +  AR  F
Sbjct: 279 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETF 338

Query: 288 EAAPDRDVVAWSALISGYAQNGQP-----DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           +    RDV++WSA+I+GYAQ+G       DE  ++   M  + V P++   +S++ ACS 
Sbjct: 339 DRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSV 398

Query: 343 VGNLDLSNWVDSYLSR------------------------------SHMDLSRAHVIAAL 372
            G L+    + + +S+                              S M+       A+L
Sbjct: 399 HGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASL 458

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           + M  KCG++  A ++F  M  R+VVS+  MI G +  G   +   L   M  EG  PD 
Sbjct: 459 LTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDR 518

Query: 433 VAFTIVLTACSHVGLVEDG 451
           V    +L AC  +  +E G
Sbjct: 519 VTIISILEACGALSALERG 537



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 221/444 (49%), Gaps = 23/444 (5%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  +I+ C+ +    +G  +H  +   G+  D+++G SLI+ Y K  +++   +VF  M
Sbjct: 80  TYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRM 139

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSAR 253
             R+VV+W++MI  YA      +A   F+ M     E + +++ +++        L  AR
Sbjct: 140 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAR 199

Query: 254 QLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           ++   +     E +V   T +I  Y+K G+++ A  +F+   +R+VV+W+A+I   AQ+ 
Sbjct: 200 EIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHR 259

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           + +EA +++  M    + P+    VSL+++C+    L+    + S++S   ++ +   V 
Sbjct: 260 KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE-TDVVVA 318

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG-----RQAVSLFDRML 424
            AL+ M  KC  +  A E F+ M  RDV+S+ +MI G +  G+       +   L +RM 
Sbjct: 319 NALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMR 378

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
            EG+ P++V F  +L ACS  G +E G +    +  V            + ++  + G +
Sbjct: 379 REGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV-GFESDRSLQTAIFNMYAKCGSI 437

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV-ANRLF-ELEPQNAGSYVLLSN 542
             A ++ + M    +  AW +LL    +Y  I+ G+L  A ++F E+  +N  S+ L+  
Sbjct: 438 YEAEQVFSKME-NKNVVAWASLL---TMY--IKCGDLTSAEKVFSEMSTRNVVSWNLMIA 491

Query: 543 IYATADRWLDVCLVRSKMKERGLR 566
            YA +     V  + S MK  G +
Sbjct: 492 GYAQSGDIAKVFELLSSMKVEGFQ 515



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 172/407 (42%), Gaps = 81/407 (19%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISL---CHSLAT 84
           FP     +S   ++K C +   L Q   +H+ I K G E D SL     ++   C S+  
Sbjct: 383 FPNKVTFMS---ILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYE 439

Query: 85  P---------------------------LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
                                       L+ +  VF+ +   N   WN ++ GY+Q+   
Sbjct: 440 AEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDI 499

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            +VF +   +  E   PD+ T   +++AC  + ++  G  +HA  ++ G++ D  V TSL
Sbjct: 500 AKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSL 559

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPER---SN 233
           I +Y K  E++ AR VFD++  R+ V+W AM+ GY   G   EA  +F  ++ ER   + 
Sbjct: 560 IGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNE 619

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFE 288
           +++ A+I    + G ++  R++F  M E   +      Y  M+D   + G +  A    +
Sbjct: 620 ITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQ 679

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
             P                                   +PD  +  +L+ AC    N+ L
Sbjct: 680 RMP----------------------------------CEPDISVWHALLGACKSHDNVQL 705

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           + W   ++ R  ++ S A V   L ++ A+ G  D + ++ + M ++
Sbjct: 706 AEWAAHHILR--LEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDK 750


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 302/558 (54%), Gaps = 41/558 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H H+++  L  D  L +  + + +S    +  +  VF  ++  N   +N LL GY Q 
Sbjct: 398 ELHGHLVRNLLNSDIILGSALVDM-YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456

Query: 115 SRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
            +  E   ++  +  E+ + PD++TF  ++  C++  +  +G  IHA +IR  + +++ V
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
            T L+ +Y +   ++ A+++F+ M ERN  SW +MI GY   G+  EA  +F  M     
Sbjct: 517 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576

Query: 230 -----------------------------------ERSNVSWNALIGGLVKIGDLRSARQ 254
                                              E   +    L+    K G +  A +
Sbjct: 577 KPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWK 636

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           ++D+  +++V+    M+  +   G    A++LF+    R+   W+++++GYA  G   E+
Sbjct: 637 VYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKES 696

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
              F +M   +++ D   +V++++ CS +  L+  + + S + +         +  ALVD
Sbjct: 697 FNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVD 756

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M +KCG + +A  +F+ M  +++VS+ +MI G S HG  ++A+ L++ M  +G+ P+EV 
Sbjct: 757 MYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVT 816

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           F  +L+ACSH GLVE+G R F +MQ  Y I    EHY CMVDLLGR G L+ A E +  M
Sbjct: 817 FLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 876

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
           P+EP  S WGALLGAC+++ D+++G L A RLFEL+PQN G YV++SNIYA A RW +V 
Sbjct: 877 PIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVE 936

Query: 555 LVRSKMKERGLRKIPGCS 572
            +R  MK +G++K PG S
Sbjct: 937 DIRQMMKMKGVKKDPGVS 954



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 192/359 (53%), Gaps = 10/359 (2%)

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
            + I   +   WN ++ GY +   + E + IF R+++    PD +TF   ++ C  + S 
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSR 292

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  +H+ +I  G   D FVG +LID+Y K  +     KVFDEM ERN V+W ++I   
Sbjct: 293 DGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAE 352

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIG-------GLVKIGDLRSAR-QLFDEMPERNV 264
           A  G   +A  +F  M E    S    +G       GL  IG  R     L   +   ++
Sbjct: 353 AQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDI 412

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +  + ++D Y+K G +  A  +F +  +R+ V+++AL++GY Q G+ +EA++++ DM S+
Sbjct: 413 ILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSE 472

Query: 325 N-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + +QPD+F   +L++ C+   N +    + ++L R+++      V   LV M ++CG ++
Sbjct: 473 DGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI-TKNIIVETELVHMYSECGRLN 531

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
            A E+F  M  R+  S+ SMI+G   +G  ++A+ LF +M   G+ PD  + + +L++C
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 153/604 (25%), Positives = 287/604 (47%), Gaps = 56/604 (9%)

Query: 7   PNTPCKHKSCSSMLPNCSRSAPINF-----PKPSCL----------LSALTLIKKCKLQT 51
           PN+    KS S+   + + +  + F     PKP+ +          L   +LI+ C    
Sbjct: 30  PNS----KSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSN 85

Query: 52  HLHQ---VHSHIIKKGLEQDHSLVAHFISLC--HSLATPLSYSTAVFNRIVNPNTFLWNT 106
              +   +H+ +I  G   D  L+   + L         L Y+  +F  +   N   WNT
Sbjct: 86  SFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNT 145

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           ++  Y++   ++EV  ++ R+       DK+TFP VIKAC  +  +     + ++V++ G
Sbjct: 146 MILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAG 205

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           ++ ++FVG +L+D Y +   +  A    DE+   +VV+W A+I GY  +    EA  +FD
Sbjct: 206 LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFD 265

Query: 227 LMPERSNVSWNALIGGLVKI-GDLRS---ARQLFDEMP----ERNVVSYTTMIDGYAKVG 278
            M +      N      +++ G LRS    +Q+  ++     + +      +ID YAK  
Sbjct: 266 RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCD 325

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D  S   +F+   +R+ V W+++IS  AQ G  ++A+ +F  M     + + F L S++ 
Sbjct: 326 DEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILM 385

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           A + + ++     +  +L R+ ++ S   + +ALVDM +KCG ++ A ++F ++  R+ V
Sbjct: 386 ASAGLADIGKGRELHGHLVRNLLN-SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEV 444

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           SY +++ G    G   +A+ L+  M SE G+ PD+  FT +LT C++      G +    
Sbjct: 445 SYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAH 504

Query: 458 M--QNVYA-IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           +   N+   I+   E    +V +    G L  A E+ N M  E +A +W +++   +   
Sbjct: 505 LIRANITKNIIVETE----LVHMYSECGRLNYAKEIFNRM-AERNAYSWNSMIEGYQQNG 559

Query: 515 DIELGELVANRLFE------LEPQNAGSYVLLSNIYATAD----RWLDVCLVRSKMKERG 564
           + +     A RLF+      ++P       +LS+  + +D    R L   +VR+ M+E G
Sbjct: 560 ETQ----EALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 615

Query: 565 LRKI 568
           + ++
Sbjct: 616 ILQV 619



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 37  LLSALTLIKKCK---LQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           +L+ +T++  C       H  Q+HS IIKKG      ++   +   +S    ++ +  VF
Sbjct: 712 VLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVF 771

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           + +   N   WN ++ GYS++    E   ++  + ++   P++ TF  ++ ACSH   V 
Sbjct: 772 DNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVE 831

Query: 154 EGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVG 211
           EG  I  ++   + ++      T ++DL G+   +  A++  ++MP E  V +W A++  
Sbjct: 832 EGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGA 891

Query: 212 YASVGDL----VEAKTVFDLMPE 230
                D+    + A+ +F+L P+
Sbjct: 892 CRVHKDMDMGRLAAQRLFELDPQ 914


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 279/518 (53%), Gaps = 45/518 (8%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN   W  L+ G  QN    E  ++F +++ E   P+  T    + AC+++  +R G  I
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 159 HAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           H   I+   +D D+ VG SL+D Y K + +  AR+ F  + + ++VSW AM+ GYA  G 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 218 LVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
             EA  +   M     E   ++WN L+ G  + GD ++A + F  M    +   TT I G
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 274 ---------------------------------------YAKVGDMTSARSLFEAAPDRD 294
                                                  Y+    +  A S+F     RD
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VV W+++IS  AQ+G+   A+ +  +M   NV+ +   +VS + ACS++  L     +  
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQ 624

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           ++ R  +D     ++ +L+DM  +CG++ ++  +F+ MP RD+VS+  MI    +HG G 
Sbjct: 625 FIIRCGLDTCN-FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGM 683

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
            AV+LF    + GL P+ + FT +L+ACSH GL+E+GW++F+ M+  YA+ P+ E YACM
Sbjct: 684 DAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACM 743

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLL R G      E +  MP EP+A+ WG+LLGAC+++ + +L E  A  LFELEPQ++
Sbjct: 744 VDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSS 803

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+YVL++NIY+ A RW D   +R  MKERG+ K PGCS
Sbjct: 804 GNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCS 841



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/536 (23%), Positives = 239/536 (44%), Gaps = 68/536 (12%)

Query: 36  CLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           C+    ++++KC+   +L    QVH+ ++  G++    L +  + + +     +  +  +
Sbjct: 88  CIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEV-YCQTGCVEDARRM 146

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+++   N F W  +++ Y     + E   +F  ++ E   PD + FP V KACS + + 
Sbjct: 147 FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 206

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           R G  ++  ++  G + +  V  S++D++ K   +  AR+ F+E+  ++V  W  M+ GY
Sbjct: 207 RVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY 266

Query: 213 ASVGDLVEA-KTVFDLM---PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
            S G+  +A K + D+     +   V+WNA+I G  + G    A + F EM         
Sbjct: 267 TSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMG-------- 318

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
                            L +  P+  VV+W+ALI+G  QNG   EA+ +F  M  + V+P
Sbjct: 319 ----------------GLKDFKPN--VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +   + S +SAC+ +  L     +  Y  +     S   V  +LVD  AKC +++ A   
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  +   D+VS+ +M+ G ++ G   +A+ L   M  +G+ PD + +  ++T  +  G  
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           +    FF+ M                                 +SM ++P+ +     L 
Sbjct: 481 KAALEFFQRM---------------------------------HSMGMDPNTTTISGALA 507

Query: 509 ACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           AC    +++LG+ +   +     + + G    L ++Y+  D     C V S++  R
Sbjct: 508 ACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTR 563



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 16/309 (5%)

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           + P+   WN L+ G++Q          F R+      P+  T    + AC  V +++ G 
Sbjct: 460 IEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IH  V+R  ++    VG++LI +Y     +  A  VF E+  R+VV W ++I   A  G
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG 579

Query: 217 DLVEAKTVFDLMPER--SNVSWNAL-----IGGLVKIGDLRSARQLFDEMPERNVVS--- 266
             V A    DL+ E   SNV  N +     +    K+  LR  +++   +    + +   
Sbjct: 580 RSVNA---LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNF 636

Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
              ++ID Y + G +  +R +F+  P RD+V+W+ +IS Y  +G   +AV +F    +  
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMG 696

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA-HVIAALVDMNAKCGNMDR 384
           ++P+     +L+SACS  G ++   W    + ++   +  A    A +VD+ ++ G  + 
Sbjct: 697 LKPNHITFTNLLSACSHSGLIE-EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 385 AAELFETMP 393
             E  E MP
Sbjct: 756 TLEFIEKMP 764



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 166/375 (44%), Gaps = 43/375 (11%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           N    S  L+A   ++  KL     ++H ++++  +E    + +  IS+ +S    L  +
Sbjct: 498 NTTTISGALAACGQVRNLKLG---KEIHGYVLRNHIELSTGVGSALISM-YSGCDSLEVA 553

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
            +VF+ +   +  +WN+++   +Q+ R +    +   +       +  T    + ACS +
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++R+G  IH  +IR G+D   F+  SLID+YG+   I  +R++FD MP+R++VSW  MI
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-NVVSYT 268
             Y   G  ++A  +F                            Q F  M  + N +++T
Sbjct: 674 SVYGMHGFGMDAVNLF----------------------------QXFRTMGLKPNHITFT 705

Query: 269 TMIDGYAKVGDMTSARSLF-----EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
            ++   +  G +      F     E A D  V  ++ ++   ++ GQ +E ++    M  
Sbjct: 706 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM-- 763

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              +P+  +  SL+ AC    N DL+ +   YL       S  +V+ A  ++ +  G  +
Sbjct: 764 -PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMA--NIYSAAGRWE 820

Query: 384 RAAELFETMPNRDVV 398
            AA++   M  R V 
Sbjct: 821 DAAKIRCLMKERGVT 835


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 298/531 (56%), Gaps = 44/531 (8%)

Query: 53  LHQVHSHI-IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           L+++HS I I + L  D +L    +   +S     S +  +F+R +  N   +N +++ Y
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMR-AYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY 112

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
             N+ ++E  +IF  ++     PD YTFP V+KACS + ++R G  +H A+++ G+D ++
Sbjct: 113 VNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNL 172

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           F+G +L+ +YGK                                G L EA+ V D MP R
Sbjct: 173 FIGNALVAMYGK-------------------------------CGCLREARKVLDQMPYR 201

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV------VSYTTMIDGYAKVGDMTSARS 285
             VSWN+++ G  + G    A ++  EM   N+      ++  + +  Y  + ++    +
Sbjct: 202 DVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHN 261

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE    +++++W+ +I+ Y  N  P+EAV +F  M    ++PD   + SL+ AC  +  
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           L L   +  Y+ + ++   R +++   AL+DM AKCG ++ A ++F+ M  RDVVS+ SM
Sbjct: 322 LFLGRRLHKYIEKGNL---RPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSM 378

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           +      G G  AV+LF +ML  G  PD +AF  VL+ACSH GL++ G  +F  M   Y 
Sbjct: 379 MSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYG 438

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           IVP  EH+ACMVDL GR G ++ AY  +  MP+EP+   WGALL AC+++S +++G + A
Sbjct: 439 IVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAA 498

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + LF+L P+ +G YVLLSNIYA A  W DV  VR  MK+ G++K+PG S++
Sbjct: 499 DLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNV 549


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 215/649 (33%), Positives = 322/649 (49%), Gaps = 112/649 (17%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           P  L S L L    K      +V + I   G   D +L +  ++L ++    L  ++ VF
Sbjct: 94  PRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSK-LALMYTNCGDLKEASRVF 152

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           +++       WN L+   +++  F     +F +++      D YTF  V K+ S + SV 
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +H  +++ G  E   VG SL+  Y K   +  ARKVFDEM ER+V+SW ++I GY 
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 214 SVG-------------------DLVEAKTVFDLMPE--------------------RSNV 234
           S G                   DL    +VF    +                    R + 
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA----- 289
             N L+    K GDL SA+ +F EM  R+VVSYT+MI GYA+ G    A  LFE      
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 290 -APD---------------------------------RDVVAWSALISGYAQNGQPDEAV 315
            +PD                                  D+   +AL+  YA+ G   EA 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 316 KIFSDMCSKNV--------------------------------QPDEFILVSLMSACSQV 343
            +FS+M  K++                                 PDE  +  ++ AC+ +
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
              D    +  Y+ R+    S  HV  +LVDM AKCG +  A  LF+ + ++D+VS+  M
Sbjct: 513 SAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G  +HG G++A++LF++M   G+ PDE++F  +L ACSH GLV++GWRFF  M++   
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P+ EHYAC+VD+L RTG+L  AY  + +MP+ P A+ WGALL  C+++ D++L E VA
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVA 691

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++FELEP+N G YVL++NIYA A++W +V  +R ++ +RGLRK PGCS
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCS 740



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 175/418 (41%), Gaps = 81/418 (19%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D  T   V++ C+   S+++G  +   +   G   D  +G+ L  +Y    ++  A +VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-------------------------- 228
           D++     + W  ++   A  GD   +  +F  M                          
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 229 --------------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
                          ER++V  N+L+   +K   + SAR++FDEM ER+V+S+ ++I+  
Sbjct: 213 GGEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIIN-- 269

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
                                        GY  NG  ++ + +F  M    ++ D   +V
Sbjct: 270 -----------------------------GYVSNGLAEKGLSVFVQMLFSGIEIDLATIV 300

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S+ + C+    + L   V  +  ++            L+DM +KCG++D A  +F  M  
Sbjct: 301 SVFAGCADSRLISLGRAVHCFGVKACFS-REDRFCNTLLDMYSKCGDLDSAKVVFREMSG 359

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           R VVSY SMI G +  G   +AV LF+ M  EG++PD    T VL  C+   L+++G R 
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRV 419

Query: 455 FEAMQN---VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            E ++     + I  S      ++D+  + G ++ A  + + M V+   S W  ++G 
Sbjct: 420 HEWIKENDMGFDIFVSN----ALMDMYAKCGSMREAELVFSEMRVKDIIS-WNTVIGG 472


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 192/563 (34%), Positives = 298/563 (52%), Gaps = 48/563 (8%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++   +  D+ L +  IS  +S +  +  +  VF +I   N F WN LL  Y+ +
Sbjct: 24  QLHARLVLSSVVPDNFLGSKLISF-YSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLH 82

Query: 115 SRFIEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTA--IHAAVIRWGVDE 169
           +   ++  +F  L+   +    PD++T    +KA + + S   G A  +H+ ++R G++ 
Sbjct: 83  NMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFS-NSGLAKEVHSFILRRGLEY 141

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D+FV  +LI  Y +  E+  AR +FD MPER++VSW AM+ GY+  G   + K +F +M 
Sbjct: 142 DIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVML 201

Query: 230 ERSNVS----------------------------------------WNALIGGLVKIGDL 249
               V                                         WNA+IG   K G L
Sbjct: 202 SSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSL 261

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             AR+LF+EM E++ ++Y +MI GY   G +  A  LF       +  W+A+ISG  QN 
Sbjct: 262 DYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNN 321

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           + + AV IF  M S   +P+   L S++   S    L     +  Y  R+  D    +V 
Sbjct: 322 RQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYD-RNIYVA 380

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            A++D  AKCG +  A  +F+ +  R ++++ S+I   ++HG    A+SLF  ML+ G+ 
Sbjct: 381 TAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ 440

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD+V FT VL AC+H G +++ W+ F  +   Y I P  EHYACMV +L R G L  A E
Sbjct: 441 PDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVE 500

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            ++ MP+EP A  WGALL    +  D+ELG+ V +RLFE+EP+N G+YV+++N+Y+ + R
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGR 560

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W D   +R  MKE  L+KIPG S
Sbjct: 561 WKDADTIRDLMKEVRLKKIPGNS 583



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 180/370 (48%), Gaps = 35/370 (9%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +I+ C+  L  R G  +HA ++   V  D F+G+ LI  Y K   I  A  VF ++P +N
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 202 VVSWTAMIVGYA----------SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
           + SW A+++ Y               LV + +  D+ P+R  V+       L  +  L S
Sbjct: 69  IFSWNALLISYTLHNMHTDLLKLFSSLVNSNST-DVKPDRFTVT-----CALKALASLFS 122

Query: 252 ARQLFDEMP--------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
              L  E+         E ++     +I  Y++  ++  AR +F+  P+RD+V+W+A+++
Sbjct: 123 NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLA 182

Query: 304 GYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH-- 360
           GY+Q G  ++  ++F  M S   V+P+    VS++ AC+Q  +L     V  +++ S   
Sbjct: 183 GYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIK 242

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           MD+S   +  A++ + AKCG++D A ELFE M  +D ++YCSMI G  +HG   QA+ LF
Sbjct: 243 MDVS---LWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLF 299

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
                E   P    +  V++        E     F AMQ+ +   P+    A ++ +   
Sbjct: 300 ----REQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQS-HGCRPNTVTLASILPVFSH 354

Query: 481 TGHLKSAYEL 490
              LK   E+
Sbjct: 355 FSTLKGGKEI 364


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 311/547 (56%), Gaps = 17/547 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--N 98
           LT++ + K   H  QVH+ +I  G E D  ++   ++  +  +  L ++T+ FNRI    
Sbjct: 11  LTILSQAKTLNHTQQVHAKVIIHGFE-DEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69

Query: 99  PNTFLWNTLLKGYSQNSR--FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
            N   WNT+L GYS++    + +V  ++ R+ R     D +     IKAC  +  +  G 
Sbjct: 70  RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IH   ++ G+D+D +V  SL+++Y +   +  A+KVFDE+P RN V W  ++ GY    
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189

Query: 217 DLVEAKTVFDLMPERSNVSWNALI--------GGLV--KIGDLRSARQLFDEMPERNVVS 266
              E   +F LM + + ++ +AL         G +   K+G       +     +++   
Sbjct: 190 KDPEVFRLFCLMRD-TGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
             ++ID Y K   + +AR LFE + DR+VV W+ LISG+A+  +  EA  +F  M  +++
Sbjct: 249 QASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI 308

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            P++  L +++ +CS +G+L     V  Y+ R+ +++   +   + +DM A+CGN+  A 
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVN-FTSFIDMYARCGNIQMAR 367

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +F+ MP R+V+S+ SMI    I+G   +A+  F +M S+ + P+ V F  +L+ACSH G
Sbjct: 368 TVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSG 427

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            V++GW+ FE+M   Y +VP  EHYACMVDLLGR G +  A   +++MPV+P ASAWGAL
Sbjct: 428 NVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           L AC+++ +++L   +A +L  +EP+ +  YVLLSNIYA A  W  V  VR KM  +G R
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYR 547

Query: 567 KIPGCSS 573
           K  G S+
Sbjct: 548 KHVGQSA 554


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/529 (34%), Positives = 295/529 (55%), Gaps = 40/529 (7%)

Query: 53  LHQVHSHI-IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           L+++HS I I + L  D +L    +   +S     S +  +F+R +  N   +N +++ Y
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMR-AYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY 112

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
             N+ ++E  +IF  ++     PD YTFP V+KACS + ++R G  +H A+++ G+D ++
Sbjct: 113 VNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNL 172

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           F+G +L+ +YGK                                G L EA+ V D MP R
Sbjct: 173 FIGNALVAMYGK-------------------------------CGCLREARKVLDQMPYR 201

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV------VSYTTMIDGYAKVGDMTSARS 285
             VSWN+++ G  + G    A ++  EM   N+      ++  + +  Y  + ++    +
Sbjct: 202 DVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHN 261

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE    +++++W+ +I+ Y  N  P+EAV +F  M    ++PD   + SL+ AC  +  
Sbjct: 262 MFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L L   +  Y+ + ++      +  AL+DM AKCG ++ A ++F+ M  RDVVS+ SM+ 
Sbjct: 322 LFLGRRLHKYIEKGNLQ-PNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMS 380

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
                G G  AV+LF +ML  G  PD +AF  VL+ACSH GL++ G  +F  M   Y IV
Sbjct: 381 AYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIV 440

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH+ACMVDL GR G ++ AY  +  MP+EP+   WGALL AC+++S +++G + A+ 
Sbjct: 441 PRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADL 500

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LF+L P+ +G YVLLSNIYA A  W DV  VR  MK+ G++K+PG S++
Sbjct: 501 LFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNV 549


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/594 (33%), Positives = 312/594 (52%), Gaps = 73/594 (12%)

Query: 50  QTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           QT   ++H  IIK     +  L  + I+    L   ++Y+  VF+++  PN+F WNT+L 
Sbjct: 21  QTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGN-ITYARHVFDKMPQPNSFSWNTMLS 79

Query: 110 GYSQN---SRFIEVFTI--------FVRLIRE--------EAVP-------------DKY 137
            YS++   S   E+F+I        +  LI          EAV              ++ 
Sbjct: 80  AYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRI 139

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TF  ++   S    V  G  IH  ++++G    VFVG+SL+D+Y K   +S A +VFDE+
Sbjct: 140 TFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEV 199

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            ERNVV +  MI G    G + ++K +F  M ER ++SW  +I GL++ G    A  LF 
Sbjct: 200 QERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFR 259

Query: 258 EMPER---------------------------------------NVVSYTTMIDGYAKVG 278
           +M +                                        NV   + ++D Y K  
Sbjct: 260 DMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCR 319

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  A ++F+   +++VV+W+A++ GY QNG  +EAV++F DM    ++PD+F L S++S
Sbjct: 320 SVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVIS 379

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           +C+ + +L+           S + +S   V  AL+ +  KCG+++ + +LF+ M  RD V
Sbjct: 380 SCANLASLEEGAQFHCQALVSGL-ISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEV 438

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+ +++ G +  G   + + LF+RML +GL PD V F  VL+ACS  GLVE G ++FE+M
Sbjct: 439 SWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESM 498

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              + I+P  +HY CM+DL GR G L+ A   +N MP  P +  W  LL +C+LY + E+
Sbjct: 499 LKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEI 558

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+  A  L EL+PQN   Y+LLS+IYA   +W +V  +R  M+E+G RK PG S
Sbjct: 559 GKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFS 612



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 199/435 (45%), Gaps = 74/435 (17%)

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           K C    +  +   +H  +I+   + + F+  +LI+ Y K   I+ AR VFD+MP+ N  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           SW  M+  Y+  GDL   + +F +MP R  VSWN+LI G V  G +  A + ++ M +  
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 264 V-----VSYTTM-----------------------------------IDGYAKVGDMTSA 283
           V     ++++TM                                   +D YAK+G ++ A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 284 -------------------------------RSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                                          + LF    +RD ++W+ +I+G  QNG   
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F DM  + +  D++   S+++AC  +  L     + + + RS  +     V +AL
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYN-HNVFVGSAL 311

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM  KC ++  A  +F+ M N++VVS+ +M+ G   +G   +AV +F  M   G+ PD+
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
                V+++C+++  +E+G + F     V  ++        ++ L G+ G ++ + +L +
Sbjct: 372 FTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFD 430

Query: 493 SMPVEPHASAWGALL 507
            M      S W AL+
Sbjct: 431 EMSFRDEVS-WTALV 444


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 181/480 (37%), Positives = 280/480 (58%), Gaps = 36/480 (7%)

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           R E V D    PL+ KAC+ +  +    A+HA  I+ G + DV +GT+L+  Y K   + 
Sbjct: 39  RHEGVYDSSVAPLLFKACASLPFLHYVKALHAESIKAGSESDVIIGTALLTTYSKCGVVR 98

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD 248
            AR +FD MPERNVV+W AMI GY   GD   A  VF+ M  ++ V+W+ +IGG  + GD
Sbjct: 99  DARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGD 158

Query: 249 LRSARQLFDEMPE--RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI---- 302
           + +AR+LFDE+P   +NVV++T M+DGYA++G+M +AR +FE  P+R+   WS++I    
Sbjct: 159 IATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYF 218

Query: 303 ---------------------------SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
                                      +GY QNG  ++A+  F  M ++  +PDEF +VS
Sbjct: 219 KKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVS 278

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++SAC+Q+G+LD+   +   +    + +    V++ LVDM AKCG++  A  +FE    +
Sbjct: 279 VLSACAQLGHLDVGKQIHHMIEHKGI-VVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEK 337

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           ++  + +MI G +I+G   + +  F RM    + PD + F  VL+AC+H GLV +     
Sbjct: 338 NIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVI 397

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
             M+  Y I    +HY CMVDLLGR G LK AY+L+  MP++P+ +  GA+LGAC+++SD
Sbjct: 398 SKMEG-YRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPNDTVLGAMLGACRIHSD 456

Query: 516 IELGELVANRLFELEPQNAGSY-VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + + E V   + E     A S+ VLLSNIYA +++W     ++    + G ++IPGCSS+
Sbjct: 457 MNMAEQVMKLICEEPVTGASSHNVLLSNIYAASEKWEKAERMKRITVDGGSQRIPGCSSI 516



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 8/214 (3%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           ++ + AVF+ +   N  +WN+++ GY QN    +    F  +  E   PD++T   V+ A
Sbjct: 223 VTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSA 282

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ +  +  G  IH  +   G+  + FV + L+D+Y K  ++  AR VF+   E+N+  W
Sbjct: 283 CAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCW 342

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP- 260
            AMI G+A  G   E    F  M E +     +++  ++      G +  A ++  +M  
Sbjct: 343 NAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEG 402

Query: 261 ---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
              E  +  Y  M+D   + G +  A  L    P
Sbjct: 403 YRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMP 436


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/491 (36%), Positives = 287/491 (58%), Gaps = 35/491 (7%)

Query: 116 RFIEVFTI--FVRLIREEAVPDK--YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           RF E+  +   + LI +   PD    T+  V++ C+ + S+++G  IH+ +    V+ D 
Sbjct: 77  RFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDG 136

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE----------- 220
            +G+ L+ +Y    ++   R++FD++    V  W  ++ GYA +G+  E           
Sbjct: 137 VLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMREL 196

Query: 221 -------AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-VSYTTMI- 271
                  A+ +FD + +R  +SWN++I G V  G       LF++M    +     TM+ 
Sbjct: 197 GIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVS 256

Query: 272 ----------DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
                     D Y+K G++ SA  +FE   +R VV+W+++I+GYA+ G  D +V++F +M
Sbjct: 257 VELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 316

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             +++ P+   +  ++ AC+ +  L+    +  ++ R+   L R HV  ALVDM  KCG 
Sbjct: 317 EKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR-HVANALVDMYLKCGA 375

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  LF+ +P +D+VS+  MI G  +HG+G +A++ F+ M + G+ PDEV+F  +L A
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 435

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GL+++GW FF  M+N   I P  EHYAC+VDLL R G+L  AY+ +  MP+EP A+
Sbjct: 436 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 495

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALL  C++Y D++L E VA  +FELEP+N G YVLL+NIYA A++W +V  +R ++ 
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 555

Query: 562 ERGLRKIPGCS 572
            RGLRK PGCS
Sbjct: 556 RRGLRKNPGCS 566



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 222/495 (44%), Gaps = 67/495 (13%)

Query: 32  PKPSCLL----SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           PKP   L    S L L    K      ++HS I    +E D  L +  + + +     L 
Sbjct: 95  PKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFM-YVTCGDLR 153

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVR--------------LIREEAV 133
               +F+++ N   FLWN L+ GY++   F E  ++F R              L  E   
Sbjct: 154 EGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGD 213

Query: 134 PDKYTFPLVIKA-CSHVLSVREGTAIHAAVIRWGVDEDVFVGTS--------LIDLYGKR 184
            D  ++  +I    S+ LS  +G  +   ++  G++ D+    S        L+D+Y K 
Sbjct: 214 RDVISWNSMISGYVSNGLS-EKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKS 272

Query: 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAKTVFDLMPERSNVSWNA 238
             ++ A +VF+ M ER+VVSWT+MI GYA  G       L       DL P  ++++   
Sbjct: 273 GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFP--NSITMAC 330

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMTSARSLFEAAPDR 293
           ++     +  L   +++   +  RN  S        ++D Y K G +  AR LF+  P++
Sbjct: 331 ILPACASLAALERGQEIHGHIL-RNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 389

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D+V+W+ +I+GY  +G   EA+  F++M +  ++PDE   +S++ ACS  G LD   W  
Sbjct: 390 DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD-EGWGF 448

Query: 354 SYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHG 411
             + R++  +  ++   A +VD+ A+ GN+ +A +  + MP   D   + +++ G  I+ 
Sbjct: 449 FNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYH 508

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
             + A  + + +    L P+   + ++L                    N+YA     E  
Sbjct: 509 DVKLAEKVAEHVFE--LEPENTGYYVLLA-------------------NIYAEAEKWEEV 547

Query: 472 ACMVDLLGRTGHLKS 486
             + + +GR G  K+
Sbjct: 548 KKLRERIGRRGLRKN 562


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 287/489 (58%), Gaps = 9/489 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+R+   +   WNT++ G+SQN    +   + +R+  E   PD  T   V+ A + V  
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G +IH   IR G  + V + T+L D+Y K   +  AR +FD M ++ VVSW +M+ G
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDG 323

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           Y   G+  +A  VF+ M E     + V+    +     +GDL   + +   + + N+ S 
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSD 383

Query: 267 ---YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                ++I  Y+K   +  A  +F     R  V+W+A+I GYAQNG+  EA+  FS+M S
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKS 443

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             ++PD F +VS++ A +++     + W+   + RS +D     V  ALVDM +KCG + 
Sbjct: 444 LGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD-KNIFVTTALVDMYSKCGAIH 502

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A +LF+ + +R V+++ +MI G   HG GR A+ LFD+M    + P+++ +  V++ACS
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV++G R F++M+  Y + PS +HY  MVDLLGR G +K A++ + +MP+ P  + +
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GA+LGACK++ +IE+GE  A +LFEL P   G +VLL+NIYA+  +W  V  VR  M+++
Sbjct: 623 GAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 564 GLRKIPGCS 572
           GL+K PGCS
Sbjct: 683 GLKKTPGCS 691



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 248/511 (48%), Gaps = 42/511 (8%)

Query: 20  LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC 79
           LP  + S   + P       A  L++ C     LHQ+   +IK GL  +H      +SL 
Sbjct: 32  LPFHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLF 91

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
               + ++ +  VF  I +    L++T+LKGY++NS          R+  ++  P  Y F
Sbjct: 92  SKYGS-INEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             ++K C     ++ G  IH  +I      +VF  T ++++Y K ++I  A K+FD MPE
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 200 RNVVSWTAMIVGYASVG------DLV----------EAKTVFDLMPERSNVSWNALIGGL 243
           R++VSW  +I G++  G      +LV          ++ T+  ++P  ++V       GL
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADV-------GL 263

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           + +G       +     +   +S T + D Y+K G + +AR +F+    + VV+W++++ 
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNIS-TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           GY QNG+P++A+ +F  M  + + P    ++  + AC+ +G+L+   +V  ++ + ++  
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG- 381

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S   V+ +L+ M +KC  +D A+++F  +  R  VS+ +MI G + +G   +A++ F  M
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM-------QNVYAIVPSPEHYACMVD 476
            S G+ PD      V+ A + + +     ++   +       +N++           +VD
Sbjct: 442 KSLGMKPDSFTMVSVIPALAELSVTRHA-KWIHGLIIRSCLDKNIFVTT-------ALVD 493

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +  + G +  A +L + M  + H   W A++
Sbjct: 494 MYSKCGAIHMARKLFD-MISDRHVITWNAMI 523



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  + +  L  D S++   IS+ +S    +  ++ +FN +       WN ++ GY+QN 
Sbjct: 371 VHKFVDQLNLGSDISVMNSLISM-YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNG 429

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           R  E    F  +      PD +T   VI A + +   R    IH  +IR  +D+++FV T
Sbjct: 430 RVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTT 489

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ER 231
           +L+D+Y K   I  ARK+FD + +R+V++W AMI GY + G    A  +FD M     E 
Sbjct: 490 ALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEP 549

Query: 232 SNVSWNALI-----GGLVKIG--DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           +++++ ++I      GLV  G    +S +Q +   P  +   Y  M+D   + G +  A 
Sbjct: 550 NDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMD--HYGAMVDLLGRAGRIKEAW 607

Query: 285 SLFEAAP 291
              E  P
Sbjct: 608 DFIENMP 614


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/525 (35%), Positives = 301/525 (57%), Gaps = 11/525 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+H I  G+  +  + +  + L     T    +  VF+ +   +T LWNT++ G+S+NS
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKF-TRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            F +   +FV ++      D  T   V+ A + +   R G  I     + G+  DV+V T
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV 234
            LI LY K  +    R +FD++ + +++S+ AMI GY    +   A T+F +L+     V
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 235 SWNALIGGL---VKIGDLRSARQLFDEMPERNVV----SYTTMIDGYAKVGDMTSARSLF 287
           + + L+G +   +    L+ +R + +   +  ++      T +   Y ++ ++  AR LF
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           + +P++ + +W+A+ISGY QNG  D A+ +F +M  + + P+   + S++SAC+Q+G L 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALS 432

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           +  WV   +    ++ S  +V  ALVDM AKCG++  A +LF+ M +++VV++ +MI G 
Sbjct: 433 IGKWVHGLIKSERLE-SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGY 491

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HGHG++A+ LF  ML  G+ P  V F  +L ACSH GLV +G   F +M N Y   P 
Sbjct: 492 GLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPM 551

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHYACMVD+LGR G L +A E +  MP+EP  + WGALLGAC ++ + E+  + + RLF
Sbjct: 552 SEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLF 611

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +L+P+N G YVLLSNIY+T   +     VR  +K+R L K PGC+
Sbjct: 612 QLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCT 656



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 235/489 (48%), Gaps = 28/489 (5%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           LTL+      + L Q+ + +I  G+  D S +         L   +++   +FN++  P+
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGA-VAHVRQLFNKVSKPD 76

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
            FL+N L++G+S N        ++  L ++  + PD +T+   I A S +   R G  +H
Sbjct: 77  LFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLH 136

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A  I  GV  ++FVG++++DLY K      ARKVFD MPER+ V W  MI G++      
Sbjct: 137 AHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFE 196

Query: 220 EAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLF-------DEMPERNVVSYTTMI 271
           ++  VF D++    +     L   L  + +L+  R           +    +V   T +I
Sbjct: 197 DSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLI 256

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             Y+K G     R LF+     D+++++A+ISGY  N + + AV +F ++ +   + +  
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSS 316

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            LV L+       +L LS  + + LS     + +  V  AL  +  +   +  A +LF+ 
Sbjct: 317 TLVGLIPVYLPFNHLQLSRLIQN-LSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            P + + S+ +MI G + +G   +A+SLF  M+ + L+P+ V  T +L+AC+ +G +  G
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG 434

Query: 452 -WRFFEAMQNVYAIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            W        V+ ++ S    +       +VD+  + G +  A +L + M V+ +   W 
Sbjct: 435 KW--------VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWN 485

Query: 505 ALLGACKLY 513
           A++    L+
Sbjct: 486 AMITGYGLH 494


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 311/554 (56%), Gaps = 30/554 (5%)

Query: 35  SCLL---SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           +C+L   +AL  +K+CK      +VH +++K G   + ++V   I+         S +  
Sbjct: 199 TCVLKCFAALGKVKECK------RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVES-AHN 251

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +  P+   WN+++ G   N        IF++++      D  T   V+ AC+++ +
Sbjct: 252 LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGN 311

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G A+H   ++    E+V    +L+D+Y K   ++ A +VF +M +  +VSWT++I  
Sbjct: 312 LSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAA 371

Query: 212 YASVGDLVEAKTVFDLMPER----------SNVSWNALIGGLVKIGDLRS---ARQLFDE 258
           Y   G   +A  +FD M  +          S V   A    L K  D+ S      +   
Sbjct: 372 YVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN 431

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           +P  N      +I+ YAK G +  AR +F   P +D+V+W+ +I GY+QN  P+EA+++F
Sbjct: 432 LPVTN-----ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELF 486

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            DM  K  +PD+  +  ++ AC+ +  LD    +  ++ R     S  HV  ALVDM AK
Sbjct: 487 LDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY-FSDLHVACALVDMYAK 544

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG +  A  LF+ +P +D++S+  MI G  +HG G +A+S F+ M   G+ PDE +F+ +
Sbjct: 545 CGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAI 604

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           L ACSH GL+ +GW+FF +M+N   + P  EHYAC+VDLL R G+L  AY+ + SMP++P
Sbjct: 605 LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKP 664

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
             + WG LL  C+++ D++L E VA  +FELEP N   YV+L+N+YA A++W +V  +R 
Sbjct: 665 DTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRK 724

Query: 559 KMKERGLRKIPGCS 572
           +M++RG ++ PGCS
Sbjct: 725 RMQKRGFKQNPGCS 738



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 228/451 (50%), Gaps = 16/451 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VHS II  G+  D +L A  + + +     L     +F++I+N   FLWN L+  Y++ 
Sbjct: 115 RVHSVIISNGISVDEALGAKLVFM-YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI 173

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F E  ++F ++ +   V + YTF  V+K  + +  V+E   +H  V++ G   +  V 
Sbjct: 174 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 233

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSN 233
            SLI  Y K   +  A  +FDE+ E +VVSW +MI G    G       +F  ++     
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293

Query: 234 VSWNALIGGLV---KIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           V    L+  LV    IG+L   R L            VV   T++D Y+K G++  A  +
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 353

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    D  +V+W+++I+ Y + G   +A+ +F +M SK V+PD + + S++ AC+   +L
Sbjct: 354 FVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 413

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           D    V SY+ ++ M  S   V  AL++M AKCG+++ A  +F  +P +D+VS+ +MI G
Sbjct: 414 DKGRDVHSYVIKNGMG-SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF-EAMQNVYAIV 465
            S +    +A+ LF  M  +   PD++    VL AC+ +  ++ G       ++  Y   
Sbjct: 473 YSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF-- 529

Query: 466 PSPEHYAC-MVDLLGRTGHLKSAYELLNSMP 495
            S  H AC +VD+  + G L  A  L + +P
Sbjct: 530 -SDLHVACALVDMYAKCGLLVLAQLLFDMIP 559


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/525 (35%), Positives = 301/525 (57%), Gaps = 11/525 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+H I  G+  +  + +  + L     T    +  VF+ +   +T LWNT++ G+S+NS
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKF-TRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            F +   +FV ++      D  T   V+ A + +   R G  I     + G+  DV+V T
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV 234
            LI LY K  +    R +FD++ + +++S+ AMI GY    +   A T+F +L+     V
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 235 SWNALIGGL---VKIGDLRSARQLFDEMPERNVV----SYTTMIDGYAKVGDMTSARSLF 287
           + + L+G +   +    L+ +R + +   +  ++      T +   Y ++ ++  AR LF
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           + +P++ + +W+A+ISGY QNG  D A+ +F +M  + + P+   + S++SAC+Q+G L 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALS 432

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           +  WV   +    ++ S  +V  ALVDM AKCG++  A +LF+ M +++VV++ +MI G 
Sbjct: 433 IGKWVHGLIKSERLE-SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGY 491

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HGHG++A+ LF  ML  G+ P  V F  +L ACSH GLV +G   F +M N Y   P 
Sbjct: 492 GLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPM 551

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHYACMVD+LGR G L +A E +  MP+EP  + WGALLGAC ++ + E+  + + RLF
Sbjct: 552 SEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLF 611

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +L+P+N G YVLLSNIY+T   +     VR  +K+R L K PGC+
Sbjct: 612 QLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCT 656



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 234/489 (47%), Gaps = 28/489 (5%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           LTL+      + L Q+ + +I  G+  D S +         L   +++   +FN++  P+
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGA-VAHVRQLFNKVSKPD 76

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
            FL+N L++G+S N        ++  L +   + PD +T+   I A S +   R G  +H
Sbjct: 77  LFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLH 136

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A  I  GV  ++FVG++++DLY K      ARKVFD MPER+ V W  MI G++      
Sbjct: 137 AHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFE 196

Query: 220 EAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLF-------DEMPERNVVSYTTMI 271
           ++  VF D++    +     L   L  + +L+  R           +    +V   T +I
Sbjct: 197 DSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLI 256

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             Y+K G     R LF+     D+++++A+ISGY  N + + AV +F ++ +   + +  
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSS 316

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            LV L+       +L LS  + + LS     + +  V  AL  +  +   +  A +LF+ 
Sbjct: 317 TLVGLIPVYLPFNHLQLSRLIQN-LSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            P + + S+ +MI G + +G   +A+SLF  M+ + L+P+ V  T +L+AC+ +G +  G
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG 434

Query: 452 -WRFFEAMQNVYAIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            W        V+ ++ S    +       +VD+  + G +  A +L + M V+ +   W 
Sbjct: 435 KW--------VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWN 485

Query: 505 ALLGACKLY 513
           A++    L+
Sbjct: 486 AMITGYGLH 494


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/582 (34%), Positives = 317/582 (54%), Gaps = 63/582 (10%)

Query: 52  HLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           H   VH+ +   GL  +    +S+VA +   C +L         V  R +  +   WN++
Sbjct: 145 HGASVHAIVCANGLGSNVFICNSIVAMY-GRCGALDDAHQMFDEVLERKIE-DIVSWNSI 202

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           L  Y Q  +      I  R+    ++   PD  T   ++ AC+ V +++ G  +H   +R
Sbjct: 203 LAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVR 262

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G+ +DVFVG +L+ +Y K  +++ A KVF+ + +++VVSW AM+ GY+ +G    A ++
Sbjct: 263 NGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSL 322

Query: 225 FDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAK 276
           F +M E       ++W+A+I G  + G    A  +F +M     E NVV+  +++ G A 
Sbjct: 323 FKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCAS 382

Query: 277 VG-----------------------------------DMTS-------ARSLFEA--APD 292
           VG                                   DM +       ARS+F++    D
Sbjct: 383 VGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD 442

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSN 350
           ++VV W+ +I GYAQ+G+ ++A+K+F+ +  +  +++P+ F L   + AC+++G L L  
Sbjct: 443 KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            + +Y  R+  +    +V   L+DM +K G++D A  +F+ M  R+VVS+ S++ G  +H
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMH 562

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G +A+ LFD+M   G   D + F +VL ACSH G+V+ G  +F  M   + I P  EH
Sbjct: 563 GRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEH 622

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           YACMVDLLGR G L  A EL+ +M +EP A  W ALL A +++++IELGE  A++L EL 
Sbjct: 623 YACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELG 682

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +N GSY LLSN+YA A RW DV  +RS MK  G+RK PGCS
Sbjct: 683 AENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCS 724



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 254/533 (47%), Gaps = 76/533 (14%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--N 98
           ++L+++CK   +    H  I   G  +  S        C + A  +S    +  R++  +
Sbjct: 34  ISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVS----LLQRLIPSH 89

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
              F WN L++   +     +    + ++ R   +PD YTFP V+KAC  + S+R G ++
Sbjct: 90  STVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASV 149

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER---NVVSWTAMIVGYASV 215
           HA V   G+  +VF+  S++ +YG+   +  A ++FDE+ ER   ++VSW +++  Y   
Sbjct: 150 HAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQG 209

Query: 216 GD-------------------LVEAKTVFDLMPERSNV---------------------- 234
           G                      +A T+ +++P  ++V                      
Sbjct: 210 GQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDV 269

Query: 235 -SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
              NAL+    K   +  A ++F+ + +++VVS+  M+ GY+++G   SA SLF+   + 
Sbjct: 270 FVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEE 329

Query: 294 ----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
               DV+ WSA+I+GYAQ G   EA+ +F  M    ++P+   L SL+S C+ VG L   
Sbjct: 330 DIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYG 389

Query: 350 NWVDSYLSRSHMDLSRAH------VIAALVDMNAKCGNMDRAAELFETMPNRD--VVSYC 401
               +Y+ ++ ++L+         V+  L+DM AKC +   A  +F+++  +D  VV++ 
Sbjct: 390 KQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWT 449

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
            MI G + HG    A+ LF ++  +   L P+    +  L AC+ +G +  G +      
Sbjct: 450 VMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQL----- 504

Query: 460 NVYAIVPSPEHYA-----CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           + YA+    E        C++D+  ++G + +A  + ++M +  +  +W +L+
Sbjct: 505 HAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLM 556


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/545 (35%), Positives = 300/545 (55%), Gaps = 18/545 (3%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           ++K C       +VH  + K G E D  + A  + L +S    L  +  VF  +   +  
Sbjct: 130 ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHL-YSRYGVLDVAHKVFVDMPVKDVG 188

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++ G+ QN        +  R+  E    D  T   ++  C+    V  G  IH  V
Sbjct: 189 SWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G+D DVFV  +LI++Y K   +  A+ VFD+M  R++VSW ++I  Y    D   A 
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 223 TVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFD-----EMPERNVVSYTTMI 271
             F  M      P+   V   +L     ++ D R +R +       E  +++VV    ++
Sbjct: 309 RFFKGMQLGGIRPDLLTVV--SLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNVQPD 329
           + YAK+G M  A ++F+  P +D ++W+ L++GY QNG   EA+  ++ M  C   + P+
Sbjct: 367 NMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PN 425

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           +   VS++ A S VG L     + + L ++ + L    V   L+D+  KCG ++ A  LF
Sbjct: 426 QGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLD-VFVATCLIDLYGKCGRLEDAMSLF 484

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             +P    V + ++I  L IHG G +A+ LF  ML+E +  D + F  +L+ACSH GLV+
Sbjct: 485 YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVD 544

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G + F+ MQ  Y I PS +HY CMVDLLGR G+L+ AYEL+ +MP++P AS WGALL A
Sbjct: 545 EGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSA 604

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CK+Y + ELG L ++RL E++ +N G YVLLSNIYA  ++W  V  VRS  ++RGLRK P
Sbjct: 605 CKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTP 664

Query: 570 GCSSL 574
           G SS+
Sbjct: 665 GWSSV 669



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 241/487 (49%), Gaps = 25/487 (5%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L   C       ++H+ ++  G  Q+  L    I+L +     +S S + F+ I   N F
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINL-YVTHGDISLSRSTFDYIHKKNIF 86

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIR----EEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            WN+++  Y +  ++ E      +L          PD YTFP ++KAC   +S+ +G  +
Sbjct: 87  SWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKV 143

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V + G ++DVFV  SL+ LY +   +  A KVF +MP ++V SW AMI G+   G+ 
Sbjct: 144 HCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNA 203

Query: 219 VEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSA----RQLFDEMPERNVVSYTTM 270
             A  V + M     +   ++  +++    +  D+ +       +     + +V     +
Sbjct: 204 AGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNAL 263

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I+ Y+K G +  A+ +F+    RD+V+W+++I+ Y QN  P  A++ F  M    ++PD 
Sbjct: 264 INMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDL 323

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELF 389
             +VSL S  SQ+ +  +S  +  ++ R    L +  VI  ALV+M AK G M+ A  +F
Sbjct: 324 LTVVSLTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNMYAKLGYMNCAHTVF 382

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHVGLV 448
           + +P +D +S+ +++ G + +G   +A+  ++ M       P++  +  ++ A SHVG +
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGAL 442

Query: 449 EDGWRFFEAM--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           + G +    +   ++Y  V       C++DL G+ G L+ A  L   +P +  +  W A+
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVA---TCLIDLYGKCGRLEDAMSLFYEIPRDT-SVPWNAI 498

Query: 507 LGACKLY 513
           + +  ++
Sbjct: 499 IASLGIH 505



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F  +  +C +V + ++   +HA ++ +G  +++ + T LI+LY    +IS +R  FD + 
Sbjct: 25  FNALFNSCVNVNATKK---LHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFD----------LMPERSNVSWNALIGGLVKIGD 248
           ++N+ SW ++I  Y   G   EA    +          L P+    ++  ++   V + D
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDF--YTFPPILKACVSLVD 139

Query: 249 LRSAR-QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            +     +F    E +V    +++  Y++ G +  A  +F   P +DV +W+A+ISG+ Q
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG    A+ + + M  + V+ D   + S++  C+Q  ++     +  ++ +  +D S   
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD-SDVF 258

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  AL++M +K G +  A  +F+ M  RD+VS+ S+I     +     A+  F  M   G
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 428 LTPD 431
           + PD
Sbjct: 319 IRPD 322


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 289/490 (58%), Gaps = 9/490 (1%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  +  +  +F+ + + +T  WN+++ GY +N  F E   +F  +  +  V    ++  +
Sbjct: 60  AGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV----SWNSM 115

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           I  C     + E      A+ +     +     ++I    +   +  A ++F+EMP RNV
Sbjct: 116 IAGCIEDERIDEAWQYFQAMPQ----RNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV 171

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           +S+TAM+ GYA +G++ +A+ +F+ MP+++ VSW  +I G V+ G    A  LF++MP++
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           N+V+ T MI GY K G    A+ LF+  P RD+ +W+A+I+GYAQNG  +EA+K+ S M 
Sbjct: 232 NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQML 291

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
              +QPD   L+S+++ACS + +L         + +S  + SR  +  AL+ M  KCG++
Sbjct: 292 KMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYE-SRISICNALITMYCKCGSI 350

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
             +   F  + + DVVS+ +MI   + HG   +A++ F  M S  + PD + F  +L+AC
Sbjct: 351 LDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSAC 410

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
            H G V +   +F +M   Y IVP PEH+AC+VD+L R G ++ AY+++  MP E     
Sbjct: 411 GHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 470

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           WGALL AC ++ +++LGEL A ++ ELEPQN+G+YV+LSNIYA A  W +V  VR  M+E
Sbjct: 471 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMRE 530

Query: 563 RGLRKIPGCS 572
           +G++K P  S
Sbjct: 531 QGVKKQPAYS 540



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 158/325 (48%), Gaps = 71/325 (21%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
            H   I+    +DV+     I    +   I  AR++FDEMP R+ VSW ++I GY   G 
Sbjct: 34  FHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGC 93

Query: 218 LVEAKTVFDL-------------------------------MPERSNVSWNALIGGLVKI 246
             E+K +F L                               MP+R+  SWNA+I GLV+ 
Sbjct: 94  FDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRY 153

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             +  A +LF+EMP RNV+SYT M+DGYAK+G++  AR+LF   P ++VV+W+ +ISGY 
Sbjct: 154 DRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYV 213

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           +NG+ DEA  +F  M  KN+                                        
Sbjct: 214 ENGKFDEAENLFEQMPDKNIV--------------------------------------- 234

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
             + A++    K G  D+A  LF+ +P RD+ S+ +MI G + +G G +A+ L  +ML  
Sbjct: 235 -AMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKM 293

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDG 451
           G+ PD      VLTACS +  +++G
Sbjct: 294 GMQPDHSTLISVLTACSSLASLQEG 318



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 11/248 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  S L+S LT            + H  ++K G E   S+    I++     + L  S  
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILD-SEL 355

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F +I +P+   WN ++  ++++  +      F  +      PD  TF  ++ AC H   
Sbjct: 356 AFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGK 415

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V E      ++I  + +         L+D+  +  ++  A K+  EMP E +   W A++
Sbjct: 416 VHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALL 475

Query: 210 VG-----YASVGDLVEAKTVFDLMPERSN--VSWNALIGGLVKIGDLRSARQLFDEMPER 262
                     +G+L  AK + +L P+ S   V  + +       G++   R L  E   +
Sbjct: 476 AACHVHLNVKLGELA-AKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVK 534

Query: 263 NVVSYTTM 270
              +Y+ M
Sbjct: 535 KQPAYSWM 542


>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
          Length = 594

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 312/578 (53%), Gaps = 56/578 (9%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--------- 97
           CK    ++++H+ +I  G  ++ +L    +    + A+      A F R V         
Sbjct: 3   CKTSDDVNKIHAQLITTGFIKNTNLTTRIVL---AFASSRHQHLAEFARCVFEEHYVYSF 59

Query: 98  ----NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
                 + FLWN ++K +S  +       +F  ++      DK++  LV+KACS +  V+
Sbjct: 60  PYGETEDPFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVK 119

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT------- 206
            G  IH  + + G+  D+F+   LI LY K   +  AR++FD MP+R+ VS+        
Sbjct: 120 GGMQIHGFLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXV 179

Query: 207 --------------------------AMIVGYASVGD-LVEAKTVFDLMPERSNVSWNAL 239
                                      M  GYA   D L  A  +F  MPE+  +SWN++
Sbjct: 180 KCGLIESARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISWNSI 239

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           I G VK G    A+ L+D MP R+V+++ TMIDGY K+G +  A++L +  P RDVVA++
Sbjct: 240 IDGYVKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYN 299

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS- 357
           ++++GY QN    EA+++F DM  + ++ PDE  LV ++SA +Q+G L  S  VD YL  
Sbjct: 300 SMMAGYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRL--SKAVDMYLYV 357

Query: 358 -RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            +    L    +  +L+DM +KCG++  A  +FE + N+ +  + ++I GL+IHG G  A
Sbjct: 358 VKKQFFLG-GKLWVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPA 416

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
            ++  ++    + PD++ FT VL ACSH G V++G   FE M+  + I P  +HY CMVD
Sbjct: 417 FNMLLQIERSSIKPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVD 476

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           +L R+G ++ A  L+  MP+EP+   W   L AC  + + E+GELVA  L      N  S
Sbjct: 477 ILSRSGSIELAKNLIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQADYNPSS 536

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           YVLLSN+YA+   W DV  VR+ MKER + KIPGCSS+
Sbjct: 537 YVLLSNMYASFGMWKDVRGVRTMMKERKIPKIPGCSSI 574



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 10/240 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L+  L+ I +    +    ++ +++KK       L    I + +S    + ++  
Sbjct: 329 PDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQFFLGGKLWVSLIDM-YSKCGSIQHAML 387

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  + N     WN ++ G + + R    F + +++ R    PD  TF  V+ ACSH   
Sbjct: 388 VFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSIKPDDITFTGVLNACSHSGF 447

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG      + R   ++  +     ++D+  +   I  A+ + ++MP E N V W   +
Sbjct: 448 VKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEKMPIEPNDVIWRTFL 507

Query: 210 VGYA-----SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
              +      +G+LV    +  L  + +  S+  L       G  +  R +   M ER +
Sbjct: 508 TACSHHKEFEMGELVAKHLI--LQADYNPSSYVLLSNMYASFGMWKDVRGVRTMMKERKI 565


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/554 (36%), Positives = 314/554 (56%), Gaps = 46/554 (8%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           S L+L++KCK    L ++H  +I   + QD   ++  +  C +S +  L+Y+ +VFN+I 
Sbjct: 7   SILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQID 66

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P+ ++WN+++KGYS +    E  T++  + ++   PD +TFP V+KACS V     G  
Sbjct: 67  RPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQC 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  +++ G + DV+  T+L+ +Y    ++  A KVFD++P+ NVV+WT++I G  S   
Sbjct: 127 VHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 218 LVEAKTVFDLMPERSNVSWN--ALIGGLVKIG---DLRSARQLFDEMPER---------- 262
             EA  V+  M E  +V+ N   ++  LV      DL + R + D   +           
Sbjct: 187 PSEAVRVYKDM-ELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSN 245

Query: 263 -NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            NV+  T ++D YAK                            Y Q GQ +EA+ +FSDM
Sbjct: 246 FNVILATAIVDMYAKC--------------------------AYNQYGQANEALDLFSDM 279

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
                 PD+   + ++ AC+ +G L     + +Y+S++++    A +  ALVDM AK G+
Sbjct: 280 RIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTA-IGTALVDMYAKSGD 338

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLT 440
            +RA ++F  +  +DV ++ S+I GL++HGHG +A++ F +M  +  L PDE+ +  VL+
Sbjct: 339 AERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLS 398

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSHVG VEDG   F +M+NV+ I P+ +HY CMVDLL R G L  A  L+  MPVEP+ 
Sbjct: 399 ACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNT 458

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           + W ALL  CK+Y +I++ + V  R+ ELE   +G YVLLSNIYA A RW +V + R  M
Sbjct: 459 AIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELM 518

Query: 561 KERGLRKIPGCSSL 574
           KER ++K  G SS+
Sbjct: 519 KERKIQKSLGHSSV 532


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 291/518 (56%), Gaps = 43/518 (8%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+  ++N +LK  +    F +V  +F  L  +   PD +T P+V+K+   +  V EG  +
Sbjct: 9   PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   ++ G++ D +V  SL+ +Y    +I    KVFDEMP+R+VVSW  +I  Y   G  
Sbjct: 69  HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRF 128

Query: 219 VEAKTVFDLMPERSNVSW---------------------------------------NAL 239
            +A  VF  M + SN+ +                                       NAL
Sbjct: 129 EDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNAL 188

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           +    K G L  AR +FD M ++NV  +T+M+ GY   G +  AR LFE +P +DVV W+
Sbjct: 189 VDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWT 248

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           A+++GY Q  + DEA+++F  M +  ++PD F+LVSL++ C+Q G L+   W+  Y++ +
Sbjct: 249 AMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINEN 308

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + + +  V  ALVDM AKCG ++ A E+F  +  RD  S+ S+I GL+++G   +A+ L
Sbjct: 309 RVTVDKV-VGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDL 367

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           +  M + G+  D + F  VLTAC+H G V +G + F +M   + + P  EH +C++DLL 
Sbjct: 368 YYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLC 427

Query: 480 RTGHLKSAYELLNSMPVEPHAS---AWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           R G L  A EL++ M  E   +    + +LL A + Y ++++ E VA +L ++E  ++ +
Sbjct: 428 RAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSA 487

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + LL+++YA+A+RW DV  VR KMK+ G+RK PGCSS+
Sbjct: 488 HTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 198/440 (45%), Gaps = 50/440 (11%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P NF  P  L S    I + +      +VH + +K GLE D  +    + +  SL   + 
Sbjct: 44  PDNFTLPVVLKS----IGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLG-KIE 98

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKAC 146
            +  VF+ +   +   WN L+  Y  N RF +   +F R+ +E  +  D+ T    + AC
Sbjct: 99  ITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSAC 158

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S + ++  G  I+  V+    +  V +G +L+D++ K   +  AR VFD M ++NV  WT
Sbjct: 159 SALKNLEIGERIYRFVVT-EFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWT 217

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-- 264
           +M+ GY S G + EA+ +F+  P +  V W A++ G V+      A +LF  M    +  
Sbjct: 218 SMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRP 277

Query: 265 -------------------------------------VSYTTMIDGYAKVGDMTSARSLF 287
                                                V  T ++D YAK G + +A  +F
Sbjct: 278 DNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVF 337

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
               +RD  +W++LI G A NG    A+ ++ +M +  V+ D    V++++AC+  G + 
Sbjct: 338 YEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVA 397

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD----VVSYCSM 403
               +   ++  H    ++   + L+D+  + G +D A EL + M        V  YCS+
Sbjct: 398 EGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSL 457

Query: 404 IKGLSIHGHGRQAVSLFDRM 423
           +     +G+ + A  + +++
Sbjct: 458 LSAARNYGNVKIAERVAEKL 477



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 32/287 (11%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F R    +  LW  ++ GY Q +RF E   +F  +      PD +    ++  C+   +
Sbjct: 235 LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGA 294

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +G  IH  +    V  D  VGT+L+D+Y K   I  A +VF E+ ER+  SWT++I G
Sbjct: 295 LEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYG 354

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
            A  G    +    DL  E  NV         V++                + +++  ++
Sbjct: 355 LAMNG---MSGRALDLYYEMENVG--------VRL----------------DAITFVAVL 387

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVA-----WSALISGYAQNGQPDEAVKIFSDMCSKNV 326
                 G +   R +F +  +R  V       S LI    + G  DEA ++   M  ++ 
Sbjct: 388 TACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESD 447

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           +    +  SL+SA    GN+ ++  V   L +  +  S AH + A V
Sbjct: 448 ETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASV 494


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/519 (34%), Positives = 297/519 (57%), Gaps = 24/519 (4%)

Query: 77  SLCHSLATPLSYS-----TAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130
           S+C        YS     T +FN+ V+  N F WN+++   +++   +E    F  + + 
Sbjct: 87  SICAGAVLRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKL 146

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
              P++ TFP  IK+CS +L +  G   H   + +G + D+FV ++L+D+Y K  E+  A
Sbjct: 147 SLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDA 206

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNA--LIGGLVKIG 247
           R +FDE+  RN+VSWT+MI GY    D   A  +F + + E S    +    +  +  + 
Sbjct: 207 RTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVS 266

Query: 248 DLRSARQLFDEMPERNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRD 294
            L +  ++ ++     V  +              T++D YAK G++  +R +F+   +RD
Sbjct: 267 VLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD 326

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVD 353
           V++W+++I+ YAQNG   E+++IF  M     +  +   L +++ AC+  G+  L   + 
Sbjct: 327 VISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH 386

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
             + +  ++ S   V  +++DM  KCG ++ A + F+ M  ++V S+ +M+ G  +HGH 
Sbjct: 387 DQVIKMGLE-SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA 445

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           ++A+ +F  M   G+ P+ + F  VL ACSH GL+E+GW +F+AM + + + P  EHY C
Sbjct: 446 KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGC 505

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVDLLGR G+LK A++L+  M + P    WGALLGAC+++ +++LGE+ A +LFEL+P+N
Sbjct: 506 MVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKN 565

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G YVLLSNIYA A RW DV  +R  MK  GL K PG S
Sbjct: 566 CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 604



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 12/281 (4%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           P  ++S L+   +   ++    VH  +IK+G E D   V + +   ++    L  S  VF
Sbjct: 261 PIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLG-VENTLMDAYAKCGELGVSRRVF 319

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSV 152
           + +   +   WN+++  Y+QN    E   IF R++++  +  +  T   V+ AC+H  S 
Sbjct: 320 DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQ 379

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           R G  IH  VI+ G++ +VFVGTS+ID+Y K  ++  ARK FD M E+NV SW+AM+ GY
Sbjct: 380 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 439

Query: 213 ASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP-----ERN 263
              G   EA  VF  M     + + +++ +++      G L      F  M      E  
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPG 499

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
           V  Y  M+D   + G +  A  L +    R D V W AL+ 
Sbjct: 500 VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLG 540


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/493 (35%), Positives = 291/493 (59%), Gaps = 13/493 (2%)

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+ + + +   WN +L G  +N+R  E   +F R++ E    D  T   V+  C  +   
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
               A+H   ++ G+D+++FV  ++ID+YGK   +   RKVFD M  R++V+W ++I G+
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPER----- 262
              G +  A  +F  M + S VS +     +L   + + GD+   R +   M  R     
Sbjct: 247 EQGGQVASAVEMFCGMRD-SGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG 305

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           ++++   ++D YAK+  + +A+ +F++ P RD V+W+ LI+GY QNG   EA+ ++  M 
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 323 S-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             + ++P +   VS++ A S +G L     + +   ++ ++L   +V   ++D+ AKCG 
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLD-VYVGTCVIDLYAKCGK 424

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +D A  LFE  P R    + ++I G+ +HGHG +A+SLF +M  EG++PD V F  +L A
Sbjct: 425 LDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAA 484

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GLV+ G  FF  MQ  Y I P  +HYACMVD+ GR G L  A++ + +MP++P ++
Sbjct: 485 CSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSA 544

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALLGAC+++ ++E+G++ +  LFEL+P+N G YVL+SN+YA   +W  V  VRS ++
Sbjct: 545 IWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVR 604

Query: 562 ERGLRKIPGCSSL 574
            + L+K PG SS+
Sbjct: 605 RQNLQKTPGWSSI 617


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/525 (34%), Positives = 287/525 (54%), Gaps = 34/525 (6%)

Query: 53  LHQVHSHIIKKGLE--QDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           + Q+H H++  G+   +   L    +S   +    + Y+  VF+ I  P+ F+ N +++G
Sbjct: 14  VRQIHGHLVVGGIAAARLQHLRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRG 73

Query: 111 YSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           Y+      + F ++ R+     + PD +TF  +++AC+ +   R G  +H AV++ G  +
Sbjct: 74  YAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLK 133

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D +V  +LI+++ K  ++  A  + DE  E +VV+W+A+I G+A+ GD+  A+ +FD   
Sbjct: 134 DAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDECT 193

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
            +  V WN ++G   K G++ +AR+LFD  PE++VVS+ T+I G                
Sbjct: 194 HKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITG---------------- 237

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
                          YA  G    A+++F +M +    PDE  +VSL+S C+  G LD  
Sbjct: 238 ---------------YAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAG 282

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             +   L           V  ALV M AKCG++  A E F TM + DV ++ S+I GL+ 
Sbjct: 283 RMIHHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAF 342

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG   Q+V  F +ML + + P+E++F  VL ACSH GLVEDG +FF  M++ Y I P+  
Sbjct: 343 HGQAEQSVRFFKKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNAR 402

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HY+C+VD+LGR G L  AY ++++M  EP A  W  LLGAC+ + ++ LG+LV  +L  +
Sbjct: 403 HYSCIVDMLGRAGLLDEAYAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNM 462

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
               +  YVLLS IYA++  WL V   R  M  RG+RK  G + +
Sbjct: 463 NEDASADYVLLSGIYASSGEWLGVETERRSMDRRGIRKAAGYAQI 507


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/545 (35%), Positives = 300/545 (55%), Gaps = 18/545 (3%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           ++K C       +VH  + K G E D  + A  + L +S    L  +  VF  +   +  
Sbjct: 130 ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHL-YSRYGVLDVAHKVFVDMPVKDVG 188

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++ G+ QN        +  R+  E    D  T   ++  C+    V  G  IH  V
Sbjct: 189 SWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G+D DVFV  +LI++Y K   +  A+ VFD+M  R++VSW ++I  Y    D   A 
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 223 TVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFD-----EMPERNVVSYTTMI 271
             F  M      P+   V   +L     ++ D R +R +       E  +++VV    ++
Sbjct: 309 RFFKGMQLGGIRPDLLTVV--SLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNVQPD 329
           + YAK+G M  A ++F+  P +D ++W+ L++GY QNG   EA+  ++ M  C   + P+
Sbjct: 367 NMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PN 425

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           +   VS++ A S VG L     + + L ++ + L    V   L+D+  KCG ++ A  LF
Sbjct: 426 QGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLD-VFVATCLIDLYGKCGRLEDAMSLF 484

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             +P    V + ++I  L IHG G +A+ LF  ML+E +  D + F  +L+ACSH GLV+
Sbjct: 485 YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVD 544

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G + F+ MQ  Y I PS +HY CMVDLLGR G+L+ AYEL+ +MP++P AS WGALL A
Sbjct: 545 EGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSA 604

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CK+Y + ELG L ++RL E++ +N G YVLLSNIYA  ++W  V  VRS  ++RGLRK P
Sbjct: 605 CKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTP 664

Query: 570 GCSSL 574
           G SS+
Sbjct: 665 GWSSV 669



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 241/487 (49%), Gaps = 25/487 (5%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L   C       ++H+ ++  G  Q+  L    I+L +     +S S + F+ I   N F
Sbjct: 28  LFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINL-YVTHGDISLSRSTFDYIHKKNIF 86

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIR----EEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            WN+++  Y +  ++ E      +L          PD YTFP ++KAC   +S+ +G  +
Sbjct: 87  SWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKV 143

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V + G ++DVFV  SL+ LY +   +  A KVF +MP ++V SW AMI G+   G+ 
Sbjct: 144 HCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNA 203

Query: 219 VEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSA----RQLFDEMPERNVVSYTTM 270
             A  V + M     +   ++  +++    +  D+ +       +     + +V     +
Sbjct: 204 AGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNAL 263

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I+ Y+K G +  A+ +F+    RD+V+W+++I+ Y QN  P  A++ F  M    ++PD 
Sbjct: 264 INMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDL 323

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELF 389
             +VSL S  SQ+ +  +S  +  ++ R    L +  VI  ALV+M AK G M+ A  +F
Sbjct: 324 LTVVSLTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNMYAKLGYMNCAHTVF 382

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHVGLV 448
           + +P +D +S+ +++ G + +G   +A+  ++ M       P++  +  ++ A SHVG +
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGAL 442

Query: 449 EDGWRFFEAM--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           + G +    +   ++Y  V       C++DL G+ G L+ A  L   +P +  +  W A+
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVA---TCLIDLYGKCGRLEDAMSLFYEIPRDT-SVPWNAI 498

Query: 507 LGACKLY 513
           + +  ++
Sbjct: 499 IASLGIH 505



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F  +  +C +V + ++   +HA ++ +G  +++ + T LI+LY    +IS +R  FD + 
Sbjct: 25  FNALFNSCVNVNATKK---LHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFD----------LMPERSNVSWNALIGGLVKIGD 248
           ++N+ SW ++I  Y   G   EA    +          L P+    ++  ++   V + D
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDF--YTFPPILKACVSLVD 139

Query: 249 LRSAR-QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            +     +F    E +V    +++  Y++ G +  A  +F   P +DV +W+A+ISG+ Q
Sbjct: 140 GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG    A+ + + M  + V+ D   + S++  C+Q  ++     +  ++ +  +D S   
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD-SDVF 258

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  AL++M +K G +  A  +F+ M  RD+VS+ S+I     +     A+  F  M   G
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 428 LTPD 431
           + PD
Sbjct: 319 IRPD 322


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 215/649 (33%), Positives = 320/649 (49%), Gaps = 112/649 (17%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           P  L S L L    K      +V + I   G   D +L +  +SL ++    L  ++ VF
Sbjct: 94  PRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSK-LSLMYTNCGDLKEASRVF 152

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           + +       WN L+   +++  F     +F +++      D YTF  V K+ S + SV 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +H  +++ G  E   VG SL+  Y K + +  ARKVFDEM ER+V+SW ++I GY 
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 214 SVG-------------------DLVEAKTVFDLMPE--------------------RSNV 234
           S G                   DL    +VF    +                    R + 
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA----- 289
             N L+    K GDL SA+ +F EM +R+VVSYT+MI GYA+ G    A  LFE      
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 290 -APD---------------------------------RDVVAWSALISGYAQNGQPDEAV 315
            +PD                                  D+   +AL+  YA+ G   EA 
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 316 KIFSDMCSKNV--------------------------------QPDEFILVSLMSACSQV 343
            +FS+M  K++                                 PDE  +  ++ AC+ +
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
              D    +  Y+ R+    S  HV  +LVDM AKCG +  A  LF+ + ++D+VS+  M
Sbjct: 513 SAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G  +HG G++A++LF++M   G+  DE++F  +L ACSH GLV++GWRFF  M++   
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P+ EHYAC+VD+L RTG L  AY  + +MP+ P A+ WGALL  C+++ D++L E VA
Sbjct: 632 IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVA 691

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++FELEP+N G YVL++NIYA A++W  V  +R ++ +RGLRK PGCS
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 176/418 (42%), Gaps = 81/418 (19%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D  T   V++ C+   S+++G  +   +   G   D  +G+ L  +Y    ++  A +VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-------------------------- 228
           DE+     + W  ++   A  GD   +  +F  M                          
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 229 --------------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
                          ER++V  N+L+   +K   + SAR++FDEM ER+V+S+ ++I+  
Sbjct: 213 GGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN-- 269

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
                                        GY  NG  ++ + +F  M    ++ D   +V
Sbjct: 270 -----------------------------GYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S+ + C+    + L   V S   ++            L+DM +KCG++D A  +F  M +
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFS-REDRFCNTLLDMYSKCGDLDSAKAVFREMSD 359

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           R VVSY SMI G +  G   +AV LF+ M  EG++PD    T VL  C+   L+++G R 
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419

Query: 455 FEAMQN---VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            E ++     + I  S      ++D+  + G ++ A  + + M V+   S W  ++G 
Sbjct: 420 HEWIKENDLGFDIFVSN----ALMDMYAKCGSMQEAELVFSEMRVKDIIS-WNTIIGG 472


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 300/528 (56%), Gaps = 14/528 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  ++  GLE D S VA+ +   ++    L  +  +F+ +   +   WN ++ GY QN
Sbjct: 269 QLHGLVVSSGLEMD-SPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQN 327

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +I     PD  TF   +   S   ++R+G  IH  +IR GV  DVF+ 
Sbjct: 328 GFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLK 387

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPER-- 231
           ++LID+Y K +++  ARK+FD+    ++V  TAMI GY   G    A  +F  L+ ER  
Sbjct: 388 SALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMR 447

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSL 286
            ++V+  +++     +  L   ++L   + +     +    + ++D YAK G +  A   
Sbjct: 448 ANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQT 507

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    D+D V W+++I+  +QNG+P+EA+ +F  M     + D   + + +SAC+ +  L
Sbjct: 508 FIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 567

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
                + +++ R      R+ + A  AL+DM +KCGN+D A  +F+TM  ++ VS+ S+I
Sbjct: 568 HYGKEIHAFMMRGAF---RSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSII 624

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
                HG  + +++LF  ML +G+ PD V F  +++AC H G V++G  +F  M     I
Sbjct: 625 AAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGI 684

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
           +   EHYACMVDL GR G L  A+ ++NSMP  P A  WG LLGAC+L+ ++EL E+ + 
Sbjct: 685 MARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASR 744

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            LF+L+PQN+G YVLLSN++A A +W  V  +RS MKERG++K+PGCS
Sbjct: 745 NLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCS 792



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 205/422 (48%), Gaps = 25/422 (5%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN +++G++   +F      + +++    +PDKYTFP VIKAC  + SV  G  +H  + 
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
             G + DVFVG+SLI  Y +   I  AR +FD MP ++ V W  M+ GY   GD   A  
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATG 234

Query: 224 VFDLMPERSNVSWNALIGGLV--------------KIGDLRSARQLFDEMPERNVVSYTT 269
           VF  M  R+  + N++    V              ++  L  +  L  + P  N     T
Sbjct: 235 VFMEM-RRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN-----T 288

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  YAK G +  AR LF+  P  D+V W+ +ISGY QNG  DEA  +F +M S  ++PD
Sbjct: 289 LLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPD 348

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
                S +   S+   L     +  Y+ R+ + L    + +AL+D+  KC +++ A ++F
Sbjct: 349 SITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLD-VFLKSALIDIYFKCRDVEMARKIF 407

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           +     D+V   +MI G  ++G    A+ +F  +L E +  + V    VL AC+ +  + 
Sbjct: 408 DQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALT 467

Query: 450 DGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
            G       ++N +    S    + ++D+  + G L  A++    +  +  A  W +++ 
Sbjct: 468 LGKELHGHILKNGHG--GSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMIT 524

Query: 509 AC 510
           +C
Sbjct: 525 SC 526



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 238/463 (51%), Gaps = 14/463 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  I   G E D  + +  I   +S    +  +  +F+R+ + +  LWN +L GY +N 
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKF-YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            +     +F+ + R E  P+  TF  V+  C+  + +  G+ +H  V+  G++ D  V  
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPER--- 231
           +L+ +Y K   +  AR++FD MP+ ++V+W  MI GY   G + EA  +F +++  R   
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKP 347

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMTSARSL 286
            ++++++ +  L +   LR  +++   +  RN VS      + +ID Y K  D+  AR +
Sbjct: 348 DSITFSSFLPLLSEGATLRQGKEIHCYII-RNGVSLDVFLKSALIDIYFKCRDVEMARKI 406

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+     D+V  +A+ISGY  NG  + A++IF  +  + ++ +   L S++ AC+ +  L
Sbjct: 407 FDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAAL 466

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            L   +  ++ ++    S  +V +A++DM AKCG +D A + F  + ++D V + SMI  
Sbjct: 467 TLGKELHGHILKNGHGGS-CYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITS 525

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            S +G   +A+ LF +M   G   D V+ +  L+AC+++  +  G +   A     A   
Sbjct: 526 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYG-KEIHAFMMRGAFRS 584

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                + ++D+  + G+L  A  + ++M  E +  +W +++ A
Sbjct: 585 DLFAESALIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAA 626



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 145/318 (45%), Gaps = 9/318 (2%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++ C+    + +G   HA ++  G+  +  +GT L+ +Y        A+ +F ++    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 202 VVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWN-ALIGGLVKIGDLRSARQ 254
              W  MI G+  +G    A   +        +P++    +     GGL  +   R    
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 255 LFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
               M  E +V   +++I  Y++ G +  AR LF+  P +D V W+ +++GY +NG  D 
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A  +F +M      P+      ++S C+    ++  + +   +  S +++  + V   L+
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD-SPVANTLL 290

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
            M AKCG++  A  LF+ MP  D+V++  MI G   +G   +A  LF  M+S  + PD +
Sbjct: 291 AMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSI 350

Query: 434 AFTIVLTACSHVGLVEDG 451
            F+  L   S    +  G
Sbjct: 351 TFSSFLPLLSEGATLRQG 368


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/526 (34%), Positives = 305/526 (57%), Gaps = 15/526 (2%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTA--VFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +I  G   + +L +  +    S+  P + S A  + ++I   +T+ WNT+++GY + +  
Sbjct: 1   MITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDP 60

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            E   ++  + ++    D YT   VIKAC     + EG  IH  + + G + +V + T+L
Sbjct: 61  EEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV-FDLMPERSNVSW 236
           ++LYG   E    +++FDEMP+R++V W A+I  YA      + + V +D++  RSNV  
Sbjct: 121 LNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMV--RSNVKP 178

Query: 237 NAL--IGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           N +  +  L     LR+ R+       +   + E +V  +  +I  Y+K G +  A  +F
Sbjct: 179 NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVF 238

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P R+VV+W++LI+GY+ N  P+EA+  F  M ++N++PDE  ++ ++  CS++ + +
Sbjct: 239 QLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFE 298

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L  W+  Y+ +  +      +  AL+DM+AKCGN++RA ++F+ M  + +VS+  MI+GL
Sbjct: 299 LGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGL 358

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           ++HGHG  A+  F +M  EG  PD + F  +L+ACSH GLV++GWR F +M+  Y I P 
Sbjct: 359 AMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPW 418

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CMVD+L R G +  A++ + +MP++P    W  LLGAC    +I L   V N L 
Sbjct: 419 MEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLC 478

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI-PGCS 572
           EL P+ +  YVLLSN++A+   W +V  VR +M +RG+ K  PGCS
Sbjct: 479 ELGPKKSEDYVLLSNLFASNAEWDNVGEVRKEMGDRGVTKQDPGCS 524



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 162/379 (42%), Gaps = 43/379 (11%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++A++++  C     L +   VH ++ K  +E D   V + + + +S    +  +  VF 
Sbjct: 181 VTAVSILSVCSSLRALREGKAVHGYVTKNLIEFD-VFVHNALIVVYSKCGSIRDAVQVFQ 239

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            +   N   W +L+ GYS N+   E    F ++  E   PD+ T   V+  CS + S   
Sbjct: 240 LMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFEL 299

Query: 155 GTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           G  I   V++ G + E   +  +L+D++ K   I+ A ++FD M E+ +VSWT MI G A
Sbjct: 300 GEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLA 359

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
             G  + A   F  M +R     ++L+        L SA             S+  ++D 
Sbjct: 360 MHGHGLSALVRFCQM-QREGFKPDSLV-----FLSLLSA------------CSHAGLVD- 400

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAW----SALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
                     R       D  +  W      ++    + G  DEA K   +M    ++PD
Sbjct: 401 -------EGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNM---PIKPD 450

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
             +  +L+ AC   GN+ L+N V +YL       S  +V+  L ++ A     D   E+ 
Sbjct: 451 MIVWRTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVL--LSNLFASNAEWDNVGEVR 508

Query: 390 ETMPNRDVVSY---CSMIK 405
           + M +R V      CS I+
Sbjct: 509 KEMGDRGVTKQDPGCSFIE 527


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 310/564 (54%), Gaps = 21/564 (3%)

Query: 26  SAPINFPKPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           +A  +F +P  L + +  ++      +L    ++HS+++  G       +   I++ +S 
Sbjct: 26  TAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM-YSK 84

Query: 83  ATPLSYSTAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
              ++++ ++F+   +  N F +N ++ G+  N    E F  + ++  E  +PDK+TFP 
Sbjct: 85  CNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPC 144

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
            IKAC  VL +++   IH  + ++G++ DVF+G++L++ Y K   +  A+  F+E+P R+
Sbjct: 145 AIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD 201

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI----GDLRSARQL-- 255
           VV W AM+ GYA +G        F  M + S V     + G++ +    GDL + R +  
Sbjct: 202 VVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHG 261

Query: 256 --FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
                  +  V    ++ID Y K   +  A  +FE   ++D+ +W++++S + Q G  D 
Sbjct: 262 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDG 321

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-----LSRSHMDLSRAHV 368
            +++   M    +QPD   + +++ ACS +  L     +  Y     L +   D+    +
Sbjct: 322 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 381

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             A++DM AKCG+M  A  +FE M N+DV S+  MI G  +HG+G +A+ +F RM    L
Sbjct: 382 KNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 441

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PDEV F  VL+ACSH G V  G  F   M++ Y + P+ EHY C++D+LGR G L  AY
Sbjct: 442 KPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 501

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           EL  +MP+E +   W ALL AC+L+    L E+ A R+FELEP++ GSYVL+SN+Y    
Sbjct: 502 ELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVG 561

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           R+ +V  VR  M+++ +RK PGCS
Sbjct: 562 RYEEVLEVRHTMRQQNVRKTPGCS 585


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 298/541 (55%), Gaps = 13/541 (2%)

Query: 43  LIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+K C  +  L    ++H  ++K G   D   +    ++ ++    +  +  VF+R+   
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM-YAKCRQVHEARKVFDRMPER 199

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           +   WNT++ GYSQN        +   +  E   P   T   V+ A S +  +R G  IH
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIH 259

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
              +R G D  V + T+L+D+Y K   +  AR +FD M ERNVVSW +MI  Y    +  
Sbjct: 260 GYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPK 319

Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR---QLFDEMP-ERNVVSYTTMI 271
           EA  +F  M +     ++VS    +     +GDL   R   +L  E+  +RNV    ++I
Sbjct: 320 EAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLI 379

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             Y K  ++ +A S+F     R +V+W+A+I G+AQNG+P EA+  FS M ++ V+PD F
Sbjct: 380 SMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTF 439

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
             VS+++A +++     + W+   + R+ +D     V  ALVDM AKCG +  A  +F+ 
Sbjct: 440 TYVSVITAIAELSITHHAKWIHGVVMRNCLD-KNVFVTTALVDMYAKCGAIMIARLIFDM 498

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  R V ++ +MI G   HG G+ A+ LF+ M    + P+ V F  V++ACSH GLVE G
Sbjct: 499 MSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAG 558

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
            + F  M+  Y+I PS +HY  MVDLLGR G L  A++ +  MPV+P  + +GA+LGAC+
Sbjct: 559 LKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQ 618

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           ++ ++   E VA RLFEL P++ G +VLL+NIY  A  W  V  VR  M  +GLRK PGC
Sbjct: 619 IHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGC 678

Query: 572 S 572
           S
Sbjct: 679 S 679



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 249/508 (49%), Gaps = 32/508 (6%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           A  L+++C     L  +   I K GL Q+H      +SL     + +  +  VF  I   
Sbjct: 40  AALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGS-VDEAARVFEPIDKK 98

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
              L+ T+LKG+++ S   +    FVR+  +E  P  Y F  ++K C     +R G  IH
Sbjct: 99  LNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +++ G   D+F  T L ++Y K +++  ARKVFD MPER++VSW  ++ GY+  G   
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 220 EAKTVFDLMPERS-NVSWNALIGGLVKIGDLR-----------SARQLFDEMPERNVVSY 267
            A  + +LM E +   S+  ++  L  +  LR           + R  FD +    V   
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSL----VNIA 274

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T ++D YAK G + +AR LF+   +R+VV+W+++I  Y QN  P EA+ IF  M  + V+
Sbjct: 275 TALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVK 334

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           P +  ++  + AC+ +G+L+   ++        +D     V+ +L+ M  KC  +D AA 
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELELD-RNVSVVNSLISMYCKCKEVDTAAS 393

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  + +R +VS+ +MI G + +G   +A++ F +M +  + PD   +  V+TA + + +
Sbjct: 394 MFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSI 453

Query: 448 VEDG-WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
                W     M+N   +  +      +VD+  + G +  A  L+  M  E H + W A+
Sbjct: 454 THHAKWIHGVVMRN--CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAM 510

Query: 507 L----------GACKLYSDIELGELVAN 524
           +           A +L+ +++ G +  N
Sbjct: 511 IDGYGTHGIGKAALELFEEMQKGTIRPN 538


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 187/532 (35%), Positives = 303/532 (56%), Gaps = 31/532 (5%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++LI  CK    L  VH+HI+++G+    S VA  +  C SL     YS ++F      N
Sbjct: 33  ISLIHTCKDTVSLRLVHAHILRRGVLS--SRVAAQLVSCSSLLKSPDYSLSIFRNSEERN 90

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F++N L++G ++N+RF      F+ ++     PD+ TFP V+K+ S +     G A+HA
Sbjct: 91  PFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHA 150

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
           A ++  VD D FV  SL+D+Y K  +++ A +VF+E P+R                    
Sbjct: 151 ATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDR-------------------- 190

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                  + + S + WN L+ G  +  D++ A  LF  MPERN  S++T+I GY   G++
Sbjct: 191 -------IKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGEL 243

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A+ LFE  P+++VV+W+ LI+G++Q G  + A+  + +M  K ++P+E+ + +++SAC
Sbjct: 244 NRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSAC 303

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           S+ G L     +  Y+  + + L RA +  +L+DM AKCG +D AA +F  M ++D++S+
Sbjct: 304 SKSGALGSGIRIHGYILDNGIKLDRA-IGTSLLDMYAKCGEVDCAATVFSNMNHKDILSW 362

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI+G ++HG   QA+  F +M+  G  PDEV F  VLTAC + G V+ G  FF++M+ 
Sbjct: 363 TAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRL 422

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            YAI P+ +HY  +VDLLGR G L  A+EL+  MP+ P  + W AL  ACK +      +
Sbjct: 423 DYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAHKS-NRTD 481

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +V   L EL+P+  GSY+ L   +A   ++ DV   R  ++++   +  GCS
Sbjct: 482 IVLQNLLELDPELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCS 533



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 16/226 (7%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           +   PDE   +SL+  C    +L L   V +++ R  +  SR  V A LV  ++   + D
Sbjct: 23  RRASPDESHFISLIHTCKDTVSLRL---VHAHILRRGVLSSR--VAAQLVSCSSLLKSPD 77

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            +  +F     R+   + ++I+GL+ +     +V  F  ML+ G+ PD + F  VL + S
Sbjct: 78  YSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNS 137

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA- 502
            +G    G     A    +    S    + +VD+  +TG L  A+++    P      + 
Sbjct: 138 KLGFRWLGRALHAATLKNFVDCDSFVRVS-LVDMYAKTGQLNHAFQVFEETPDRIKKESI 196

Query: 503 --WGALL-GACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIY 544
             W  L+ G C+   D+++    A  LF   P+ N+GS+  L   Y
Sbjct: 197 LLWNVLVNGYCRA-KDMQM----ATTLFRSMPERNSGSWSTLIKGY 237


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 182/510 (35%), Positives = 286/510 (56%), Gaps = 43/510 (8%)

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +LK  +++  F +V  +F  L  +   PD +T P+V+K+   +  V EG  +H   ++ G
Sbjct: 1   MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           ++ D +V  SL+ +Y    ++    KVFDEMPER+VVSW  +I  Y   G   +A +VF 
Sbjct: 61  LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120

Query: 227 LMPERSNV---------------------------------------SWNALIGGLVKIG 247
            M   SN+                                       + NAL+    K G
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGNALVDMFCKCG 180

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            L  AR +FD M ++NV  +T+M+ GY   G    AR LFE +P +DVV W+A+++GY Q
Sbjct: 181 CLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQ 240

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
             + DEA+++F  M +  ++PD F+LVSL++ C+Q G L+   W+  Y+  + + + +  
Sbjct: 241 FNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKV- 299

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  ALVDM AKCG ++ A  +F  M  RD  S+ S+I GL+ +G   +A+ L+  M + G
Sbjct: 300 VGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVG 359

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           +  D++ F  VLTACSH G V +G R F +M   + I P  EHY+C++DLL R G L  A
Sbjct: 360 VRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEA 419

Query: 488 YELLNSMPVEPHAS---AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
            EL++ M  E   +    + +LL A + Y ++++ E VA +L ++E  ++ ++ LL+++Y
Sbjct: 420 EELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVY 479

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           A+A+RW DV  VR KMK+ G+RK PGCSS+
Sbjct: 480 ASANRWEDVTNVRRKMKDLGIRKFPGCSSI 509



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 200/440 (45%), Gaps = 50/440 (11%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P NF  P  L S    I + +      +VH + +K GLE D  +    + +  +L   + 
Sbjct: 28  PDNFTLPVVLKS----IGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGMYAALG-KME 82

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKAC 146
            +  VF+ +   +   WN L+  Y  + RF +  ++F R+ RE  +  D+ T    + AC
Sbjct: 83  ITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSAC 142

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S + ++  G  I+  V+    +  V  G +L+D++ K   +  AR +FD M ++NV  WT
Sbjct: 143 SVLKNLEIGERIYRYVVT-EFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWT 201

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-- 264
           +M+ GY S G   EA+ +F+  P +  V W A++ G V+      A +LF  M    +  
Sbjct: 202 SMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRP 261

Query: 265 -------------------------------------VSYTTMIDGYAKVGDMTSARSLF 287
                                                V  T ++D YAK G + +A  +F
Sbjct: 262 DNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVF 321

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
               +RD  +W++LI G A NG    A+ ++ +M +  V+ D+   V++++ACS  G + 
Sbjct: 322 YEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVA 381

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PNRD---VVSYCSM 403
               +   ++  H    ++   + L+D+  + G +D A EL + M   RD   V  YCS+
Sbjct: 382 EGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSL 441

Query: 404 IKGLSIHGHGRQAVSLFDRM 423
           +     +G+ + A  + +++
Sbjct: 442 LSAARNYGNVKIAERVAEKL 461


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 192/547 (35%), Positives = 315/547 (57%), Gaps = 17/547 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--N 98
           L+++ + K   H  QVH+ +I  G  QD  ++   ++  +  +  L ++TA F+RI    
Sbjct: 11  LSILSQTKTLHHTQQVHAKVIIHGF-QDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWK 69

Query: 99  PNTFLWNTLLKGYSQNSR--FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
            N   WNT+L GYS++    + +V  ++ R+ R     D +     IKAC  +  +  G 
Sbjct: 70  RNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGM 129

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IH   ++ G+D+D +V  SL+++Y +   +  A+KVFDEMP RN V W  ++ GY    
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYS 189

Query: 217 DLVEAKTVFDLMPERSNVSWNAL-IGGLVK-IGDLRSARQ--------LFDEMPERNVVS 266
              E   +F LM + + ++ +AL +  LVK  G++ + ++        +     +++   
Sbjct: 190 KDSEVFRLFYLMRD-TGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYL 248

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
             ++ID Y K   + +AR LFE + +R+VV W+ LISG+A+  +  EA+ +F  M  +++
Sbjct: 249 EASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESI 308

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            P+   L +++ +CS +G+L     V  Y+ R+ +++   +   + +D  A+CGN+  A 
Sbjct: 309 LPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVN-FTSFIDTYARCGNIQMAR 367

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
           ++F+ MP R+V+S+ SMI    I+G   +A+  FD M S+ L P+ V F  +L+ACSH G
Sbjct: 368 KVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSG 427

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            V++GW+ FE+M   Y +VP  EHYACMVDLLGR G +  A   +++MPV+P ASAWGAL
Sbjct: 428 NVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           L AC+++ +++L   +A +L  +EP  +  YVLLSNIYA A  W  V  VR KM  +G R
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLLSNIYADAGMWEMVNCVRHKMGIKGYR 547

Query: 567 KIPGCSS 573
           K  G S+
Sbjct: 548 KPMGLSA 554


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 310/564 (54%), Gaps = 21/564 (3%)

Query: 26  SAPINFPKPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           +A  +F +P  L + +  ++      +L    ++HS+++  G       +   I++ +S 
Sbjct: 26  TAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM-YSK 84

Query: 83  ATPLSYSTAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
              ++++ ++F+   +  N F +N ++ G+  N    E F  + ++  E  +PDK+TFP 
Sbjct: 85  CNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPC 144

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
            IKAC  VL +++   IH  + ++G++ DVF+G++L++ Y K   +  A+  F+E+P R+
Sbjct: 145 AIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD 201

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI----GDLRSARQL-- 255
           VV W AM+ GYA +G        F  M + S V     + G++ +    GDL + R +  
Sbjct: 202 VVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHG 261

Query: 256 --FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
                  +  V    ++ID Y K   +  A  +FE   ++D+ +W++++S + Q G  D 
Sbjct: 262 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDG 321

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-----LSRSHMDLSRAHV 368
            +++   M    +QPD   + +++ ACS +  L     +  Y     L +   D+    +
Sbjct: 322 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 381

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             A++DM AKCG+M  A  +FE M N+DV S+  MI G  +HG+G +A+ +F RM    L
Sbjct: 382 KNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 441

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PDEV F  VL+ACSH G V  G  F   M++ Y + P+ EHY C++D+LGR G L  AY
Sbjct: 442 KPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 501

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           EL  +MP+E +   W ALL AC+L+    L E+ A R+FELEP++ GSYVL+SN+Y    
Sbjct: 502 ELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVG 561

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           R+ +V  VR  M+++ +RK PGCS
Sbjct: 562 RYEEVLEVRHTMRQQNVRKTPGCS 585


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 290/493 (58%), Gaps = 11/493 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   WN +L G  +N+R  +  T+  R++ E    D  T   V+  C  +  
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGD 183

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                 +H   ++ G+  ++FV  +LID+YGK   ++ A  VF  M  R++V+W ++I  
Sbjct: 184 RALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISA 243

Query: 212 YASVGDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPER----- 262
               G +  A  +F  M E       ++  +L   + + GD   A+ +   +  R     
Sbjct: 244 NEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVG 303

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           ++++   M+D YAK+  + +A+ +F+  PDRDVV+W+ LI+GY QNG  +EA++I++DM 
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363

Query: 323 S-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
           + + ++P +   VS++ A S +G L     + +   ++ ++L   +V   L+D+ AKCG 
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLD-VYVTTCLIDLYAKCGK 422

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  LFE MP R    + ++I GL +HGHG +A+SLF +M  E + PD V F  +L A
Sbjct: 423 LVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAA 482

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GLV+ G  FF+ MQ VY IVP  +HY CMVD+LGR G L  A+E + SMP++P ++
Sbjct: 483 CSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSA 542

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALLGAC+++ ++E+G++ +  LFEL+P+N G YVL+SN+YA   +W  V  VRS ++
Sbjct: 543 VWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVR 602

Query: 562 ERGLRKIPGCSSL 574
            + L+K PG SS+
Sbjct: 603 RQNLQKTPGWSSM 615



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 195/392 (49%), Gaps = 17/392 (4%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARK 192
           PD +TFP +++A     S  +   +HA  +R G +  +VF   SL+  Y +   ++ A +
Sbjct: 67  PDSFTFPPLVRAAPGPASAAQ---LHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR 123

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGD 248
           VFDEMPER+V +W AM+ G        +A T+   M         V+ ++++   V +GD
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGD 183

Query: 249 LRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            R+   +      ++ +S        +ID Y K+G +T A  +F     RD+V W+++IS
Sbjct: 184 -RALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIIS 242

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
              Q G+   AV++F  M    V PD   LVSL SA +Q G+   +  V  Y+ R   D+
Sbjct: 243 ANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDV 302

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
                  A+VDM AK   +D A ++F+ +P+RDVVS+ ++I G   +G   +A+ +++ M
Sbjct: 303 GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDM 362

Query: 424 LS-EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
            + EGL P +  F  VL A S++G ++ G R   A+     +        C++DL  + G
Sbjct: 363 HNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCG 421

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
            L  A  L   MP       W A++    ++ 
Sbjct: 422 KLVEAMFLFEHMPRRS-TGPWNAIIAGLGVHG 452



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 162/344 (47%), Gaps = 18/344 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S  + + +C  +     VH ++ ++G +    +  + +   ++  + +  +  
Sbjct: 267 PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK 326

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           VF+ + + +   WNTL+ GY QN    E   I+  +   E + P + TF  V+ A S++ 
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLG 386

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +++G  +HA  I+ G++ DV+V T LIDLY K  ++  A  +F+ MP R+   W A+I 
Sbjct: 387 GLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIA 446

Query: 211 GYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVV- 265
           G    G   +A ++F  M +      +V++ +L+      G +   R  FD M     + 
Sbjct: 447 GLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIV 506

Query: 266 ----SYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDE---AVKI 317
                YT M+D   + G +  A    ++ P + D   W AL+     +G  +    A + 
Sbjct: 507 PIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQN 566

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
             ++  +NV    ++L+S M A  ++G  D  + V S + R ++
Sbjct: 567 LFELDPENV--GYYVLMSNMYA--KIGKWDGVDAVRSLVRRQNL 606


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 192/539 (35%), Positives = 292/539 (54%), Gaps = 48/539 (8%)

Query: 80  HSLATPLSYSTA--VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           H   +P S   A  VFN+I  P   +WN ++ G S++ R  +    +  +  +       
Sbjct: 14  HYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHL 73

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TF  + K+C+ V  VR+G  +    ++ G +   FV  +LI +Y    E++ A+KVFD M
Sbjct: 74  TFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGM 133

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS--------------------W- 236
            ER+VVSW ++I GY         K V DL  E   ++                    W 
Sbjct: 134 LERDVVSWNSIICGYYQFNRF---KKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE 190

Query: 237 ---------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
                                N LI    + G +  A ++F +M E+N+VS+  MI GYA
Sbjct: 191 MGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 250

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           KVG++ +A+ LF   P RDV++W+++I GY+   Q  EAVK+F +M    V+PDE  + +
Sbjct: 251 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 310

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
            +SAC+ +G+LD    V  Y+ R H   S   V  +L+DM  KCG +++A ++F  M  R
Sbjct: 311 ALSACAHLGSLDAGEAVHDYI-RKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR 369

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D VS+ S+I GL+++G    A+++FD+ML EG+ P    F  VL AC+HVGLV+ G   F
Sbjct: 370 DSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHF 429

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           ++M+N Y + P  +HY C+VDLL R+G+L  AY  +  MP+ P    W  LL ACKL+ +
Sbjct: 430 KSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGN 489

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           + L E+V+ +L  L+P N G+YVL S+ YA +DRW DV  +R  M+   L+K    SS+
Sbjct: 490 LVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSI 548



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 190/418 (45%), Gaps = 44/418 (10%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           L+ + L K C   + + Q   V  H +K G E   S V++ +   +     L+ +  VF+
Sbjct: 73  LTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESX-SFVSNALIHMYVCFGELAMAQKVFD 131

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            ++  +   WN+++ GY Q +RF +V  +F  +       D  T    I A   +     
Sbjct: 132 GMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEM 191

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +   +   GV  D+++G +LID+YG+R  I  A +VF +M E+N+VSW AMI+GYA 
Sbjct: 192 GDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAK 251

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PER------ 262
           VG+LV AK +F+ MP R  +SW ++I G         A +LF EM      P+       
Sbjct: 252 VGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATA 311

Query: 263 ---------------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                                      +V    ++ID Y K G +  A  +F     RD 
Sbjct: 312 LSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDS 371

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V+W+++ISG A NG  + A+ +F  M  + + P     V ++ AC+ VG +D        
Sbjct: 372 VSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKS 431

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH 412
           +  ++           +VD+  + G +D A    + MP   DVV +  ++    +HG+
Sbjct: 432 MENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGN 489


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 287/524 (54%), Gaps = 55/524 (10%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           WN+++  Y Q    I    +F R+  +  + PD  +   V+ AC+ V +   G  +H   
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           +R G+ EDVFVG +++D+Y K   +  A KVF+ M  ++VVSW AM+ GY+ +G   +A 
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 317

Query: 223 TVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGY 274
            +F+ + E     + V+W+A+I G  + G    A  +F +M     E NVV+  +++ G 
Sbjct: 318 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGC 377

Query: 275 AKVG-----------------------------------DMTS-------ARSLFEAAP- 291
           A  G                                   DM S       AR++F+  P 
Sbjct: 378 ALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 437

Query: 292 -DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDL 348
            DR VV W+ LI G AQ+G+ +EA+++FS M   +  V P+ F +   + AC+++G L  
Sbjct: 438 KDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRF 497

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
              + +Y+ R+  + +   V   L+DM +K G++D A  +F+ M  R+ VS+ S++ G  
Sbjct: 498 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 557

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
           +HG G +A+ +F  M   GL PD V F +VL ACSH G+V+ G  +F  M   + +VP  
Sbjct: 558 MHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 617

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           EHYACMVDLL R G L  A EL+  MP++P  + W ALL AC++Y+++ELGE  AN+L E
Sbjct: 618 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 677

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LE  N GSY LLSNIYA A  W DV  +R  MK  G++K PGCS
Sbjct: 678 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCS 721



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 154/558 (27%), Positives = 261/558 (46%), Gaps = 87/558 (15%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL  +CK       +H  ++ +GL  D +   H IS+  +  +P + + +V  R+ +P++
Sbjct: 34  TLFHQCKSLASAELIHQQLLVQGLPHDPT---HIISMYLTFNSP-AKALSVLRRL-HPSS 88

Query: 102 ---FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
              F WN L++         +V  ++ R+ R    PD YTFP V+KAC  + S R G ++
Sbjct: 89  HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 148

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV---VSWTAMIVGYASV 215
           HA V   G + +VFVG  L+ +YG+      AR+VFDEM ER V   VSW +++  Y   
Sbjct: 149 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 208

Query: 216 GDLVEAKTVFDLMPERSNV------------------SW--------------------- 236
           GD + A  +F+ M E   +                  +W                     
Sbjct: 209 GDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFV 268

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-- 293
            NA++    K G +  A ++F+ M  ++VVS+  M+ GY+++G    A  LFE   +   
Sbjct: 269 GNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 328

Query: 294 --DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
             +VV WSA+I+GYAQ G   EA+ +F  M     +P+   LVSL+S C+  G L     
Sbjct: 329 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKE 388

Query: 352 VDSYLSRSHMDLSRAH------VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSM 403
              +  +  ++L          VI AL+DM +KC +   A  +F+ +P  +R VV++  +
Sbjct: 389 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 448

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVEDGW--------- 452
           I G + HG   +A+ LF +ML     + P+    +  L AC+ +G +  G          
Sbjct: 449 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 508

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           RF  AM  V           C++D+  ++G + +A  + ++M  + +  +W +L+    +
Sbjct: 509 RFESAMLFV---------ANCLIDMYSKSGDVDAARVVFDNMH-QRNGVSWTSLMTGYGM 558

Query: 513 YSDIELGELVANRLFELE 530
           +     GE      +E++
Sbjct: 559 HGR---GEEALQIFYEMQ 573



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 178/375 (47%), Gaps = 21/375 (5%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           + + +  KC +    ++V   +  K +   +++V  + S        L     +    + 
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY-SQIGRFDDALGLFEKIREEKIE 329

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   W+ ++ GY+Q     E   +F ++    + P+  T   ++  C+   ++  G   
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 159 HAAVIRW--GVDE-----DVFVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMI 209
           H   I+W   +DE     D+ V  +LID+Y K K    AR +FD +P  +R+VV+WT +I
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 210 VGYASVGDLVEAKTVFDLMPERSN-VSWNAL-----IGGLVKIGDLRSARQ-----LFDE 258
            G A  G+  EA  +F  M +  N V  NA      +    ++G LR  RQ     L + 
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
                +     +ID Y+K GD+ +AR +F+    R+ V+W++L++GY  +G+ +EA++IF
Sbjct: 510 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 569

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M    + PD    V ++ ACS  G +D      + +++    +  A   A +VD+ ++
Sbjct: 570 YEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSR 629

Query: 379 CGNMDRAAELFETMP 393
            G +D A EL   MP
Sbjct: 630 AGRLDEAMELIRGMP 644



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 163/358 (45%), Gaps = 41/358 (11%)

Query: 37  LLSALTLIKKCKLQT---HLHQVHSHIIKKGLEQDHS-------LVAHFISLCHSLATPL 86
           +++ ++L+  C L     H  + H H IK  L  D +       ++   I +     +P 
Sbjct: 367 VVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK 426

Query: 87  SYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLV 142
           + + A+F+ I   + +   W  L+ G +Q+    E   +F ++++ +   +P+ +T    
Sbjct: 427 A-ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCA 485

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           + AC+ + ++R G  IHA V+R   +   +FV   LID+Y K  ++  AR VFD M +RN
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
            VSWT+++ GY   G   EA  +F  M +           GLV  G +     L+     
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKV----------GLVPDG-VTFVVVLY----- 589

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
               S++ M+D    +         F   P  +   ++ ++   ++ G+ DEA+++   M
Sbjct: 590 --ACSHSGMVD--QGINYFNGMNKDFGVVPGAE--HYACMVDLLSRAGRLDEAMELIRGM 643

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
             K   P   + V+L+SAC    N++L  +  + L         ++ + + +  NA+C
Sbjct: 644 PMK---PTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARC 698



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQT--HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           P NF  P+    +  L+   +L       Q+H+++++   E     VA+ +   +S +  
Sbjct: 471 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 530

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +  +  VF+ +   N   W +L+ GY  + R  E   IF  + +   VPD  TF +V+ A
Sbjct: 531 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYA 590

Query: 146 CSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           CSH   V +G      + + +GV         ++DL  +   +  A ++   MP +   +
Sbjct: 591 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 650

Query: 205 -WTAMI 209
            W A++
Sbjct: 651 VWVALL 656


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 179/487 (36%), Positives = 286/487 (58%), Gaps = 9/487 (1%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S +   F+ +   N   W  +++GY Q     E  T+F ++  +  V    ++ +++  
Sbjct: 94  VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV----SWTVMLGG 149

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
              V  + E   +   +      +DV   T++I  Y +   ++ AR++FDEMP RNV+SW
Sbjct: 150 LIQVRRIDEARGLFDIM----PVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISW 205

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           T MI GY   G +  A+ +F++MPE++ VSW A++ G  + G +  A +LFD MP + VV
Sbjct: 206 TTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVV 265

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           +   MI G+ + G++  AR +F+   ++D   WSA+I  Y + G   EA+ +F+ M  + 
Sbjct: 266 ACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREG 325

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           VQ +   L+S++S C+ + +LD    V + L +S  D S   V + L+ M  KCG++ +A
Sbjct: 326 VQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFD-SDVFVASVLITMYVKCGDLVKA 384

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            ++F+    +D+V + S+I G + HG   +A+ +F  M S G+  D V F  VL+ACS+ 
Sbjct: 385 RQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYT 444

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           G V++G   FE+M++ Y + P  EHYACMVDLLGR G +  A +L+  MPVE  A  WGA
Sbjct: 445 GKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGA 504

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+ + ++ L E+ A +L +LEP+NAG Y+LLSNIYA+  RW DV  +R  M+ + +
Sbjct: 505 LLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKV 564

Query: 566 RKIPGCS 572
            K PGCS
Sbjct: 565 SKSPGCS 571



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 189/366 (51%), Gaps = 60/366 (16%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ + +     WN+++ GY QN+R  E   +F      + +P++ T             
Sbjct: 38  VFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF------DKMPERNT------------- 78

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                      + W           LI  Y K + +S ARK FD MPERNVVSWTAM+ G
Sbjct: 79  -----------VSW---------NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRG 118

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   G + EA+T+F  MPE++ VSW  ++GGL+++  +  AR LFD MP ++VV+ T MI
Sbjct: 119 YVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMI 178

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GY + G +  AR LF+  P R+V++W+ +ISGY QNGQ D A K+F  M  KN    E 
Sbjct: 179 SGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKN----EV 234

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA------KCGNMDRA 385
              +++   +Q G ++ ++           +L  A  + A+V  NA      + G + +A
Sbjct: 235 SWTAMLMGYTQGGRIEEAS-----------ELFDAMPVKAVVACNAMILGFGQNGEVAKA 283

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            ++F+ +  +D  ++ +MIK     G   +A++LF  M  EG+  +  +   VL+ C+ +
Sbjct: 284 RQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASL 343

Query: 446 GLVEDG 451
             ++ G
Sbjct: 344 ASLDHG 349



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 168/335 (50%), Gaps = 54/335 (16%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            S I  Y +  +I  AR+VFDEMP++ +VSW +M+ GY       EA+ +FD MPER+ V
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN LI G VK   +  AR+ FD MPERNVVS+T M+ GY + G ++ A +LF   P+++
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN 139

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VV+W+ ++ G  Q  + DEA  +F  M  K+V                            
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVKDV---------------------------- 171

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
                   ++R ++I+       + G +  A ELF+ MP R+V+S+ +MI G   +G   
Sbjct: 172 --------VARTNMISGY----CQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVD 219

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC- 473
            A  LF+ M  +    +EV++T +L   +  G +E+    F+AM       P     AC 
Sbjct: 220 VARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAM-------PVKAVVACN 268

Query: 474 -MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            M+   G+ G +  A ++ + +  E     W A++
Sbjct: 269 AMILGFGQNGEVAKARQVFDQIR-EKDDGTWSAMI 302


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 210/609 (34%), Positives = 309/609 (50%), Gaps = 95/609 (15%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV------FNRIVNPNTFLWNTLLK 109
           +H H I  GL        +FI L   LA   ++   V      F+ + +P+ FLWN ++K
Sbjct: 101 LHGHTITSGLLHS----PNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIK 156

Query: 110 GYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            Y       +   +F  +I   +  PDKYTFPLVIKACS +  +  G  IH   +  G  
Sbjct: 157 MYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFS 216

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            ++FV  SL+ +Y    ++  AR+VF+ M +R+VVSW  MI G+   G   EA  VF+ M
Sbjct: 217 SNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSM 276

Query: 229 ------PERSNVS---------------------------------WNALIGGLVKIGDL 249
                 P+ + +                                   NAL+    + G +
Sbjct: 277 MDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGI 336

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL----------------------- 286
             A  +F E  E++V+++T+MI+GY   G+  SA +L                       
Sbjct: 337 DEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSAC 396

Query: 287 -------------------FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
                              F     +  V W+AL+SG   N    EAV +F  M  + V+
Sbjct: 397 ASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVE 456

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +     S++ A + + +L     + SYL RS   +S+  VI  L+DM +KCG++D A +
Sbjct: 457 ANHATFNSVIPAYAILADLKQVMNLHSYLVRSGF-ISKIAVITGLIDMYSKCGSLDYAHK 515

Query: 388 LFETMPNR--DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
           +F+ +PN+  D++ +  +I G  +HGHG  AV LF++M+  G+ P+E+ FT VL ACSH 
Sbjct: 516 IFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHR 575

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV+DG   F+ M   Y   P P HY C+VDLLGR G L  AY+L+ SMP + + S WGA
Sbjct: 576 GLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGA 635

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC ++ ++ELGE+ A RLFELEP++ G+Y+LL+NIYA   RW D   VR  M + GL
Sbjct: 636 LLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGL 695

Query: 566 RKIPGCSSL 574
           RK P  SS+
Sbjct: 696 RKTPAQSSV 704


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 291/500 (58%), Gaps = 16/500 (3%)

Query: 86  LSYSTAVFNRIVNP--NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLV 142
           LSY+  +F    +P  +   +N L++ + +     +   +FV ++ + AV PD++T    
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANT 177

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           +K+CS +  +  G  + A   + G   D FV  SLI +Y    ++  A  +F  +  + V
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGV 237

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDE 258
           ++W AMI GY   GD  E   +F  M E       V+  ++     ++GD    + + + 
Sbjct: 238 IAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEY 297

Query: 259 MPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
             E+ ++      T ++D YAK G++  AR LF+    RDVVAWSA+ISGY Q+ +  EA
Sbjct: 298 AEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREA 357

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AAL 372
           + IF++M    V P++  +VS++SAC+ +G L+   WV SY+ R  + L+   VI   AL
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLT---VILGTAL 414

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VD  AKCG +  A + FE+MP R+  ++ ++IKG++ +G  R+A+ LF  ML   + P +
Sbjct: 415 VDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTD 474

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           V F  VL ACSH  LVE+G R F +M   Y I P  EHY CMVDLLGR G +  AY+ + 
Sbjct: 475 VTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIR 534

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           +MP+EP+A  W ALL AC ++ ++E+GE    ++  L+P ++G+Y+LLSN YA+  +W +
Sbjct: 535 NMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKN 594

Query: 553 VCLVRSKMKERGLRKIPGCS 572
             +VR +MKE+G+ KIPGCS
Sbjct: 595 AAMVRKEMKEKGVEKIPGCS 614


>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
          Length = 534

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/508 (37%), Positives = 282/508 (55%), Gaps = 42/508 (8%)

Query: 76  ISLCHSLATPLSYSTAVFNRIVNP---NTFLWNTLLKGYSQNSR----FIEVFTIFVRLI 128
           +SL  S  +P  ++ AVF+  V     N +LW   +  Y++++       E      RL+
Sbjct: 26  VSLIASSHSP-GHARAVFDNAVPTACENVYLWTATIAAYARHASSSPSVAEGALTLFRLM 84

Query: 129 REEAVP--DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
               VP  + +T   V++ CS + +VR G  +H  ++  G+     V  +L+D+YG    
Sbjct: 85  LRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFLVNAGLGRAEHVRAALVDMYGNHGR 144

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           ++ AR+VFDEM   +VV    M+  Y   GD+   + VFD M ER  +SWN L+ G ++ 
Sbjct: 145 VADARRVFDEMSATSVVLGNTMVACYVRAGDVESGRVVFDRMVERDLISWNTLMMGYLRQ 204

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           G    AR+LF+EMP+RNV S                               W+  I+ Y+
Sbjct: 205 GGAGVARELFEEMPDRNVNS-------------------------------WNMAIAAYS 233

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           Q     +AV +F+ M     QPD   +  LMSAC+Q+G+L ++  V   L +  ++++  
Sbjct: 234 QERSWADAVAVFNRMRLARFQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMN-F 292

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
           HV+ +L+DM AKCG++ +A  LF     +D VSY  MI  L+ HGHGR A+ +FD M  E
Sbjct: 293 HVLNSLIDMYAKCGSISQAHLLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKE 352

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
            L PD V    VL+AC+H GLV DG  +FE+M+  YAI  SP+HYACMVDL GR G +K 
Sbjct: 353 RLQPDAVTLLGVLSACAHAGLVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKE 412

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           AYEL  +MP+EPHA  WGAL+ AC+ + ++E+G++ A  L  +EP+N G+YVLL+N  A 
Sbjct: 413 AYELARAMPMEPHAGVWGALINACRKHCNVEVGKVAARELIAIEPRNPGTYVLLANTLAR 472

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             +W  V  V   M+ +G+ K  GCS L
Sbjct: 473 GQQWEFVETVWQSMRGKGIEKTAGCSWL 500


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 182/541 (33%), Positives = 304/541 (56%), Gaps = 28/541 (5%)

Query: 60  IIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI 118
           ++  GL  D    +  I+ C  S +  L+Y   +   I NPN F WN  ++G+S++    
Sbjct: 1   MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60

Query: 119 EVFTIFVRLIRE---EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           +    + +++R    E+ PD +T+P++ K C+ +     G  I   V +  ++    V  
Sbjct: 61  DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS--- 232
           + I ++    E+  ARKVFDE P R++VSW  +I GY  +G+  +A  V+ +M       
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180

Query: 233 -NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT-----TMIDGYAKVGDMTSAR-- 284
            +V+   L+     +GDL   ++ + E  + N +  T      ++D ++K GD+  AR  
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFY-EYVKANGLRMTIPLANALMDMFSKCGDIHEARRI 239

Query: 285 -----------SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
                       LF+   ++DVV W+A+I G  Q  +  +A+ +F +M + N  PDE  +
Sbjct: 240 FDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITM 299

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +  +SACSQ+G LD+  W+  Y+ +  + L+ A +  +LVDM AKCGN+  A  +F  + 
Sbjct: 300 IHCLSACSQLGALDVGIWIHRYIEKHSLSLNVA-LGTSLVDMYAKCGNISEALCVFHGIQ 358

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            R+ ++Y ++I GL++HG    A+S F+ M+  G+ PDE+ F  +L+AC H G+++ G  
Sbjct: 359 TRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRD 418

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           +F  M++ + + P  +HY+ MVDLLGR G L+ A +L+ SMP+E  A+ WGALL  C+++
Sbjct: 419 YFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMH 478

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
            +++LGE  A +L EL+P ++G YVLL  +Y  A+ W D    R  M ERG+ KIPGCSS
Sbjct: 479 GNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSS 538

Query: 574 L 574
           +
Sbjct: 539 I 539


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 307/542 (56%), Gaps = 13/542 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+  CK +  + Q+H+ II  GL   +S     +   ++    ++ +  +F+++      
Sbjct: 13  LLLACKDEAPVTQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVD 72

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++  YS+     EV  ++ +++ E   PD  TF + IKA S +  +  G  I    
Sbjct: 73  AWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRA 132

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           + +G   DVFVG+S+++LY K  +I  A+ VFD+M +R+VV W  MI G    G+++EA 
Sbjct: 133 VDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAV 192

Query: 223 TVFDLMPERSNVSWNALIGGLVK----IGDLR-----SARQLFDEMPERNVVSYTTMIDG 273
            +F  M +        L+ GLV+    +G+L+         +  EM   +V+  T+++D 
Sbjct: 193 DMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDM 252

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK+GD+  A  +FE  P ++ V+W ALISG+AQNG  + A+ +  +M S   +PD  +L
Sbjct: 253 YAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVL 312

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETM 392
           VS + ACSQVG+L L   +  Y+ R    L    V+  AL+DM AKCG++  A  +F+ +
Sbjct: 313 VSALLACSQVGHLKLGKSIHGYIVRR---LGFELVLGTALIDMYAKCGSLSCAHAIFDRV 369

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
            +RDV+ + +MI    IHG G++ +SLF +M    ++PD   F  +L+A SH G V+ G 
Sbjct: 370 DSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQ 429

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
            +F AM N   I PS +HYACMVDL  R G ++ AY+L+ SM  EP  + W ALL  C  
Sbjct: 430 YWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHN 489

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           Y ++  GE+ A ++ +L P + G Y L+SN ++ A  W  V ++R  MKE G++K+PG S
Sbjct: 490 YRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYS 549

Query: 573 SL 574
           ++
Sbjct: 550 AV 551


>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 303/526 (57%), Gaps = 15/526 (2%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTA--VFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +I  G   + +L +  +    S+  P + S A  + ++I   +T+ WNT+++GY + +  
Sbjct: 1   MITNGHLHNPTLASKLVVSFASITLPGTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDP 60

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            E   I+  + ++    D YT   VIKAC     + EG  IH  + + G + +V + T+L
Sbjct: 61  EEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTAL 120

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV-FDLMPERSNVSW 236
           + +YG   E    +++FDEMP+R++V W A+I  YA      + + V +D++   SNV  
Sbjct: 121 LSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVS--SNVKP 178

Query: 237 NAL--IGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           N +  +  L     LR+ R+       +   + E +V  +  +ID Y+K G +  A  +F
Sbjct: 179 NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVF 238

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P R+VV+W++LI+GY+ N  P+EA+  F  M ++N++PDE  ++ ++  CS++ + +
Sbjct: 239 QLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFE 298

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L  W+  Y+ ++ +      +   L+DM+AKCGN+ RA ++F+ M  + +VS+  MI+GL
Sbjct: 299 LGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGL 358

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +++GHG  A+  F +M  EG  PD + F  +L+ACSH GLV++GWR F +M+  Y I P 
Sbjct: 359 AMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPW 418

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CMVD+L R G +  A++ + +MP++P    W  LLGAC    +I L   V N L 
Sbjct: 419 MEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLC 478

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI-PGCS 572
           EL P+ +  YVLLSN++A+   W +V  VR +M +RG+ K  PGCS
Sbjct: 479 ELGPKKSEDYVLLSNLFASNAEWDNVXEVRKEMGDRGVTKQDPGCS 524



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 168/407 (41%), Gaps = 50/407 (12%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQD- 68
           H +C   +   S     +  KP+ + +A++++  C     L +   VH ++ K  +E D 
Sbjct: 157 HGNCPYKVREVSYDMVSSNVKPNGV-TAVSILSVCSSLRALREGKAVHGYVTKNLIEXDV 215

Query: 69  --HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVR 126
             H+ +    S C S+      +  VF  +   N   W +L+ GYS N+   E    F +
Sbjct: 216 FVHNALIDVYSKCGSIRD----AVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQ 271

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRK 185
           +  E   PD+ T   V+  CS + S   G  I   V++ G V E   +   L+D++ K  
Sbjct: 272 MEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCG 331

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
            I  A ++FD M E+ +VSWT MI G A  G  + A   F  M +R     ++L+     
Sbjct: 332 NIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQM-QREGFKPDSLV----- 385

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW----SAL 301
              L SA             S+  ++D           R       D  +  W      +
Sbjct: 386 FLSLLSA------------CSHAGLVD--------EGWRCFSSMEADYHIXPWMEHYGCM 425

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           +    + G  DEA K   +M    ++PD  +  +L+ AC   GN+ L+N V + L     
Sbjct: 426 VDILCRAGLVDEAFKFVQNM---PIKPDMIVWRTLLGACXXQGNISLANQVMNXLCELGP 482

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY---CSMIK 405
             S  +V+  L ++ A     D   E+ + M +R V      CS I+
Sbjct: 483 KKSEDYVL--LSNLFASNAEWDNVXEVRKEMGDRGVTKQDPGCSFIE 527


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 290/512 (56%), Gaps = 46/512 (8%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLI--REEAVPDKYTFPLVIKAC--SHVLSVREGTAIH 159
           W  L+K Y+  S   E   ++ R +  R    P     P+++KA   S    +  G ++H
Sbjct: 23  WAHLVKEYASQSLLREAALVYARNLPRRTHHQP---LLPVLLKAAAASSPTELGLGKSLH 79

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS--------------- 204
           A  ++     D+ VGT+++ +Y K   ++ AR+ FDEMP+RNV+S               
Sbjct: 80  AEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMD 139

Query: 205 ----------------WTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKI 246
                           W  +I G+A  GD+ EA+  F+  P   R+ V+W  L+ G V  
Sbjct: 140 GALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCA 199

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +AR++FD MP RN   +++M+ GY K GD   AR++F+  P R++V W+ALI+GYA
Sbjct: 200 GDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYA 259

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           Q G  ++A++ F  M  + V+PDEF + SL+SAC+Q+G+L+    V  ++++ H+  +  
Sbjct: 260 QIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNH- 318

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            V+  L+DM AKCG++  A  +F++M  ++   + +MI  L+ HG   +A+ LF +M   
Sbjct: 319 FVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERS 378

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G  P+ +    VL AC+H G V++G + F  + + Y +    EHY C+VDLLGR G LK 
Sbjct: 379 GRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVGAGVEHYGCLVDLLGRAGKLKE 437

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS----YVLLSN 542
           AYE++N+M  EP+   WG+LLGAC+++ D E+  LV   +  L   +A S    Y++L+N
Sbjct: 438 AYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLAN 497

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           I A ++RW     +R KM  RG+ K PGCSSL
Sbjct: 498 IMAASERWEQAEQMRRKMARRGVEKTPGCSSL 529



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 36/277 (12%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + AVF+RI   N   WN L+ GY+Q     +    F  +++E   PD++T   ++ AC+ 
Sbjct: 236 ARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQ 295

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + S+ +G  +H  + +  + ++ FV   LID+Y K  +++ AR +FD M  +N   W  M
Sbjct: 296 LGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTM 355

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPERN 263
           I   AS G   EA  +F  M ERS    N     A++G     G +    Q+F++     
Sbjct: 356 ISALASHGQSDEALHLFFQM-ERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNK----- 409

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                  +D Y  VG                V  +  L+    + G+  EA +I ++M  
Sbjct: 410 -------LDAYG-VGA--------------GVEHYGCLVDLLGRAGKLKEAYEIVNNMSE 447

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
              +P+E I  SL+ AC    + ++S  V   + R H
Sbjct: 448 ---EPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLH 481



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 5/172 (2%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+  C     L Q   VH  I ++ + ++H ++   I + ++    L+++  +F+ +  
Sbjct: 288 SLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDM-YAKCGDLAHARYIFDSMRW 346

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   WNT++   + + +  E   +F ++ R    P+  T   V+ AC+H   V EG  I
Sbjct: 347 KNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQI 406

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
              +  +GV   V     L+DL G+  ++  A ++ + M E  N V W +++
Sbjct: 407 FNKLDAYGVGAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLL 458



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 24/250 (9%)

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC---- 340
           +++  +   D   W+ L+  YA      EA  +++    +       + V L +A     
Sbjct: 10  AIYMTSSSHDPDKWAHLVKEYASQSLLREAALVYARNLPRRTHHQPLLPVLLKAAAASSP 69

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           +++G L  S   ++  S    DL    V   +V M  KCG +  A   F+ MP+R+V+SY
Sbjct: 70  TELG-LGKSLHAEALKSAFARDLL---VGTTIVSMYCKCGALADARRAFDEMPDRNVISY 125

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA--- 457
            +++ G ++ G    A++LF  M S       V +  ++   +  G + +  R+FEA   
Sbjct: 126 NALLAGYAVAGDMDGALALFGGMRSW----THVTWATLIRGFAEKGDMAEARRWFEATPP 181

Query: 458 -MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+ V       + Y C        G +++A E+ + MP   +A  W +++       D 
Sbjct: 182 GMRTVVTWTVLVQGYVC-------AGDMETAREVFDRMPAR-NAFVWSSMVTGYFKAGDA 233

Query: 517 ELGELVANRL 526
           E    V +R+
Sbjct: 234 EEARAVFDRI 243


>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
 gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
          Length = 544

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/512 (35%), Positives = 286/512 (55%), Gaps = 46/512 (8%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLI--REEAVPDKYTFPLVIKACSHVLSVREG--TAIH 159
           W  L++ Y+  S   E   ++ R +  R    P     P+++KA +       G   ++H
Sbjct: 23  WAHLVREYASQSLLREAALVYARNVPRRTHHQP---LLPILLKAAATASPAEPGLGKSLH 79

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS--------------- 204
           A  ++     D+ VGT+++ +Y K   ++ AR+ FDEMP+RNV+S               
Sbjct: 80  AEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAAAGDMD 139

Query: 205 ----------------WTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKI 246
                           W  +I G+A  GD+ EA+  F+  P   R+ V+W  L+ G V  
Sbjct: 140 GALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWFETTPPGMRTVVTWTVLVHGYVSA 199

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +AR++FD MP RN   +++M+ GY K G+   A+++F   P R++V W+ALI+GYA
Sbjct: 200 GDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYA 259

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           Q G  ++A++ F  M  + V+PDEF + SL+SAC+Q+G+L+    V  +++R H+  +  
Sbjct: 260 QIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREHIRKNH- 318

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            V+  L+DM AKCG++  A  +F+ M  ++   + +MI  L+ HG   +A+ LF +M   
Sbjct: 319 FVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHGRSDEALHLFFQMEHS 378

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G TP+ +    VL AC+H G V++G R F  + + Y +    EHY C+VDLLGR G LK 
Sbjct: 379 GQTPNTITVLAVLGACTHGGFVDEGLRIFNKL-DAYGVEAGVEHYGCLVDLLGRAGKLKE 437

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS----YVLLSN 542
           AYE++ +MP EP+   WG+LLGAC+++ D E+  LV + +  L   +A S    Y++LSN
Sbjct: 438 AYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLHSVHASSNDAEYIMLSN 497

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           I A + RW     +R KM   G+ K P CSSL
Sbjct: 498 IMAASKRWEQAEQIRRKMARHGVEKTPACSSL 529



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 20/271 (7%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + AVF+RI   N   WN L+ GY+Q     +    F  +++E   PD++T   ++ AC+ 
Sbjct: 236 AQAVFHRIPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQ 295

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + S+ +G  +H  + R  + ++ FV   LID+Y K  ++  AR +FD M  +N   W  M
Sbjct: 296 LGSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTM 355

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMP--- 260
           I   AS G   EA  +F  M E S  + N     A++G     G +    ++F+++    
Sbjct: 356 ISALASHGRSDEALHLFFQM-EHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLDAYG 414

Query: 261 -ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQP------- 311
            E  V  Y  ++D   + G +  A  + +  P+  + V W +L+     +G         
Sbjct: 415 VEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVT 474

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           DE  ++ S   S N    E+I++S + A S+
Sbjct: 475 DEIHRLHSVHASSN--DAEYIMLSNIMAASK 503



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 5/189 (2%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+  C     L Q   VH  I ++ + ++H ++   I + ++    L Y+  +F+ +  
Sbjct: 288 SLLSACAQLGSLEQGKKVHDFINREHIRKNHFVLNGLIDM-YAKCGDLVYARYIFDGMRW 346

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            NT  WNT++   + + R  E   +F ++      P+  T   V+ AC+H   V EG  I
Sbjct: 347 KNTECWNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRI 406

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGD 217
              +  +GV+  V     L+DL G+  ++  A ++   MPE  N V W +++      GD
Sbjct: 407 FNKLDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGD 466

Query: 218 LVEAKTVFD 226
              ++ V D
Sbjct: 467 AEMSRLVTD 475



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 24/242 (9%)

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ------VG 344
           PD+    W+ L+  YA      EA  +++    +       + + L +A +       +G
Sbjct: 20  PDK----WAHLVREYASQSLLREAALVYARNVPRRTHHQPLLPILLKAAATASPAEPGLG 75

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
               +  + S  +R  +      V   +V M  KCG +  A   F+ MP+R+V+SY +++
Sbjct: 76  KSLHAEALKSAFARDLL------VGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALL 129

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G +  G    A++LF  M S       V +  ++   +  G + +  R+FE        
Sbjct: 130 AGYAAAGDMDGALALFGGMRSWTY----VTWATLIRGFAKKGDMAEARRWFETTPPGMRT 185

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
           V +   +  +V      G +++A E+ + MP   +A  W +++       + E  + V +
Sbjct: 186 VVT---WTVLVHGYVSAGDMEAAREVFDRMPAR-NAFVWSSMVTGYFKAGNAEEAQAVFH 241

Query: 525 RL 526
           R+
Sbjct: 242 RI 243


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 283/487 (58%), Gaps = 9/487 (1%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S +  VF+++   N   W ++++GY Q     E   +F R+  +  V    ++ +++  
Sbjct: 94  ISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV----SWTVMLGG 149

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
                 V E   +   +      +DV   T++I        +S AR++FDEMP+RNVV+W
Sbjct: 150 LIEDGRVDEARRLFDMIPV----KDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAW 205

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           T+MI GYA    +  A+ +F++MP+++ V+W A++ G  + G +  A +LF  MP + V 
Sbjct: 206 TSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVA 265

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           +   MI G+   G++  AR +F+   ++D   WSALI  Y + G   EA+ +FS M  + 
Sbjct: 266 ACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREG 325

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V+P+   ++S++S C  + +LD    V S L RSH DL   +V + L+ M  KCG++   
Sbjct: 326 VRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLD-IYVSSVLITMYIKCGDLVTG 384

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F+   ++D+V + S+I G + HG G +A+ +F  M S G  PDE+ F  VL+AC + 
Sbjct: 385 KRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYT 444

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           G V++G   FE+M++ Y +    EHYACMVDLLGR G L  A  L+ +MPVE  A  WGA
Sbjct: 445 GKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGA 504

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LL AC+ + +++L E+ A +L +LEP +AG Y+LLSN+YA+  RW DV  +R  M+ R +
Sbjct: 505 LLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNV 564

Query: 566 RKIPGCS 572
            K PGCS
Sbjct: 565 SKSPGCS 571



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 181/366 (49%), Gaps = 60/366 (16%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ + +     WN ++ GY  N R  E   +F      + +P++ T             
Sbjct: 38  IFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLF------DKMPERNT------------- 78

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                      I W           L+  Y K   IS ARKVFD+MPERNVVSWT+M+ G
Sbjct: 79  -----------ISW---------NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRG 118

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y   G + EA+ +F  MPE++ VSW  ++GGL++ G +  AR+LFD +P ++VV+ T MI
Sbjct: 119 YVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMI 178

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            G    G ++ AR +F+  P R+VVAW+++ISGYA N + D A K+F  M  KN    E 
Sbjct: 179 GGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKN----EV 234

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC------GNMDRA 385
              +++   ++ G ++ +            +L +A  +  +   N         G + +A
Sbjct: 235 TWTAMLKGYTRSGRINEA-----------AELFKAMPVKPVAACNGMIMGFGLNGEVGKA 283

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F+ M  +D  ++ ++IK     G   +A++LF  M  EG+ P+  +   +L+ C  +
Sbjct: 284 RWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSL 343

Query: 446 GLVEDG 451
             ++ G
Sbjct: 344 ASLDHG 349



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 172/356 (48%), Gaps = 62/356 (17%)

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237
           I  + +  +I  AR +FD++  + V SW A++ GY       EA+ +FD MPER+ +SWN
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWN 82

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
            L+ G VK G +  AR++FD+MPERNVVS+T+M+ GY + G +  A  LF   P+++VV+
Sbjct: 83  GLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVS 142

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+ ++ G  ++G+ DEA ++F  +  K+V     ++  L   CS+               
Sbjct: 143 WTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGL---CSE--------------- 184

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
                                 G +  A E+F+ MP R+VV++ SMI G +++     A 
Sbjct: 185 ----------------------GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVAR 222

Query: 418 SLFDRMLSEGLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC-- 473
            LF+ M      PD  EV +T +L   +  G + +    F+AM       P     AC  
Sbjct: 223 KLFEVM------PDKNEVTWTAMLKGYTRSGRINEAAELFKAM-------PVKPVAACNG 269

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           M+   G  G +  A  + + M  E     W AL+   K+Y      EL A  LF L
Sbjct: 270 MIMGFGLNGEVGKARWVFDQMK-EKDDGTWSALI---KIYERKGF-ELEALALFSL 320



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 52/342 (15%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +++   +  +  +F  + + N   W  +LKGY+++ R  E   +F      +A+P K   
Sbjct: 212 YAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELF------KAMPVK--- 262

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
              + AC+                             +I  +G   E+  AR VFD+M E
Sbjct: 263 --PVAACN----------------------------GMIMGFGLNGEVGKARWVFDQMKE 292

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN--ALIGGLVKIGDLRS---ARQ 254
           ++  +W+A+I  Y   G  +EA  +F LM +R  V  N  ++I  L   G L S    RQ
Sbjct: 293 KDDGTWSALIKIYERKGFELEALALFSLM-QREGVRPNFPSIISILSVCGSLASLDHGRQ 351

Query: 255 LFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +  ++     + ++   + +I  Y K GD+ + + +F+    +D+V W+++I+GYAQ+G 
Sbjct: 352 VHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGF 411

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVI 369
            ++A+++F +M S    PDE   + ++SAC   G +       +S  S+  +D    H  
Sbjct: 412 GEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHY- 470

Query: 370 AALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIH 410
           A +VD+  + G ++ A  L E MP   D + + +++     H
Sbjct: 471 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTH 512



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 73/247 (29%)

Query: 364 SRAHVIAALVDMNAKCGNMDRA-------------------------------AELFETM 392
           S A +    +   A+ G +DRA                                +LF+ M
Sbjct: 14  SSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM 73

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM---------------LSEGLT-------- 429
           P R+ +S+  ++ G   +G   +A  +FD+M               + EGL         
Sbjct: 74  PERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFW 133

Query: 430 --PDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGH 483
             P++  V++T++L      GL+EDG R  EA + ++ ++P  +  A   M+  L   G 
Sbjct: 134 RMPEKNVVSWTVMLG-----GLIEDG-RVDEA-RRLFDMIPVKDVVASTNMIGGLCSEGR 186

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP-QNAGSYVLLSN 542
           L  A E+ + MP + +  AW +++    + + ++    VA +LFE+ P +N  ++  +  
Sbjct: 187 LSEAREIFDEMP-QRNVVAWTSMISGYAMNNKVD----VARKLFEVMPDKNEVTWTAMLK 241

Query: 543 IYATADR 549
            Y  + R
Sbjct: 242 GYTRSGR 248


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 306/532 (57%), Gaps = 14/532 (2%)

Query: 53  LHQVHSHIIKKGLE-QDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           + Q+H+ I+  GL   D + +A  I+  +     +  +  VF ++   +   WN+++  Y
Sbjct: 1   MTQIHALILTTGLFFNDANSIAQLIA-SYGRINNIIPARNVFEKMPQRSINAWNSMIIAY 59

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           S+ +   EV  ++ R+I E   PD  TF + +KACS ++ +  G  I    + +G   DV
Sbjct: 60  SRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDV 119

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           FV +S+++LY K  ++  A+ VFD+M +R+VVSWT MI G+A  G  ++A  ++  M + 
Sbjct: 120 FVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKE 179

Query: 232 SNVSWNALIGGLVK----IGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSA 283
                  ++ GL++    +GD +    +   M  R +    V  T++ID YAK G +  A
Sbjct: 180 RTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELA 239

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +FE  P + V++W ALISG+AQNG  ++ +    +M +   +PD   L+S +SAC+QV
Sbjct: 240 SRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQV 299

Query: 344 GNLDLSNWVDSYL-SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           GNL +   +  ++  R ++D        AL+DM AKCG +  A  LF+ +  RD++ + +
Sbjct: 300 GNLKVGKSLHGHIVKRLYLDKVSG---TALIDMYAKCGALTFARALFDQIEPRDLILWNA 356

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI    IHG G +A+SLF +M    +TPD   F  +L+ACSH GLVE+G  +F  + +  
Sbjct: 357 MISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKS 416

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I PS +HYACMVDLL R G ++ AY+L+ SM ++P  + W ALL  C  + ++ +GE+V
Sbjct: 417 KIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMV 476

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           A ++ E  P + G YVL+SN ++ A +W D  + R  MK  G+RK+PG S++
Sbjct: 477 AKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAV 528


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 295/529 (55%), Gaps = 47/529 (8%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ ++  G  Q   +    ++L  +L   +S S   F++I   + + WN+++  Y  N 
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGD-VSLSRCTFDQIPQKDVYAWNSMISAYVHNG 96

Query: 116 RFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            F E    F +L+   E  PD YTFP V+KAC    ++ +G  IH    + G   +VFV 
Sbjct: 97  HFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVA 153

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SLI +Y +                           G+  +     A+++FD MP R   
Sbjct: 154 ASLIHMYSR--------------------------FGFTGI-----ARSLFDDMPFRDMG 182

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTM----IDGYAKVGDMTSARSL 286
           SWNA+I GL++ G+   A  + DEM     + N V+  ++    +D YAK+G + SA  +
Sbjct: 183 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKV 242

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGN 345
           FE  P +DV++W+ LI+GYAQNG   EA++++  M   K + P++   VS++ A + VG 
Sbjct: 243 FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 302

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L     +   + ++++ L    V   L+D+  KCG +  A  LF  +P    V++ ++I 
Sbjct: 303 LQQGMKIHGRVIKTNLHLD-VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 361

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
              IHGH  + + LF  ML EG+ PD V F  +L+ACSH G VE+G   F  MQ  Y I 
Sbjct: 362 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIK 420

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           PS +HY CMVDLLGR G+L+ AY+ +  MP++P AS WGALLGAC+++ +IELG+  ++R
Sbjct: 421 PSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDR 480

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LFE++ +N G YVLLSNIYA   +W  V  VRS  +ERGL+K PG S++
Sbjct: 481 LFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTI 529


>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 274/472 (58%), Gaps = 2/472 (0%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++K         +    +V + R     D +TFP+++KA S + S   G A+H   +
Sbjct: 22  WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G     FVGT+L+D+Y     I  A KVF+EM  ++VV W +M+  YAS G +  A  
Sbjct: 82  KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
           +FD MP +   S+N +I G  KIG   +AR +FD +  +++VS+ +MI     VGDM +A
Sbjct: 142 LFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 201

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R+LF+  P ++V+ W+ +ISGY       EAV +F +M + N + D   +  ++SAC+ +
Sbjct: 202 RNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHL 261

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           G L     +  Y ++ H   S  HV  +L+DM AKCG + R+ E+F     +D+  + ++
Sbjct: 262 GWLGKGTEMHVY-AQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAI 320

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I GL++HG+G  AV L D+M   G+ PDE+ F  +L+ACSH  LV++G R F+ M+  + 
Sbjct: 321 ISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFG 380

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           + P  EHY CMVDLLGR G L  A++L+ +MP EP  S  GALLGAC ++ D+E GE V 
Sbjct: 381 LPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVI 440

Query: 524 NRLF-ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           N +  +    + G +++  N+YA+  +W +    R +M E G+ K  G S++
Sbjct: 441 NLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTI 492



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 113/264 (42%), Gaps = 13/264 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   N   WNT++ GY     + E   +F  +       D  T  LV+ AC+H+  
Sbjct: 204 LFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGW 263

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +GT +H       +     V TSLID+Y K   I  + +VF +   +++  W A+I G
Sbjct: 264 LGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISG 323

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ----LFDEMPER----- 262
            A  G    A  + D M +           GL+     RS  Q    LFD M +      
Sbjct: 324 LALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPP 383

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            +  Y  M+D   + G +  A  L +A P +       AL+     +   +   K+ + +
Sbjct: 384 KLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVINLI 443

Query: 322 CSK--NVQPDEFIL-VSLMSACSQ 342
            SK  +V   EF++ V+L ++C Q
Sbjct: 444 TSKAHHVSDGEFMMFVNLYASCGQ 467



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 34/197 (17%)

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           D  +  W+ +I      G PD+A+  + +M       D F    L+ A S + +  +   
Sbjct: 16  DSGLQRWNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFA 75

Query: 352 VDS-----------YLSRSHMDLSRA-----HVIAALVDMNAK--------------CGN 381
           +             ++  + +D+  A     H      +M  K              CG 
Sbjct: 76  LHGQAMKTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQ 135

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           MD A +LF+ MP +D+ S+  MI G +  G    A S+FDR+ ++    D V++  ++ A
Sbjct: 136 MDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAK----DIVSWNSMILA 191

Query: 442 CSHVGLVEDGWRFFEAM 458
           C++VG + +    F+ M
Sbjct: 192 CTNVGDMGNARNLFDVM 208


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 295/540 (54%), Gaps = 68/540 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
            +L++ C     L Q+H+ II  G  Q + L+   +S   +    L+ +  VF RI NP+
Sbjct: 22  FSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN-AHKVFERIENPS 80

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           T +WN +++G+SQ+    ++  ++ R++  EA P+++T+  +I  C+    +REG  +H 
Sbjct: 81  TTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHG 140

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V+  G   +VFV TSL                         V+  A+  GY  V     
Sbjct: 141 RVVANGYCTNVFVRTSL-------------------------VNLYAIAGGYDGV----- 170

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                                        R AR++FDE+ +RN+VS+ +++ GY + GD+
Sbjct: 171 -----------------------------RKARRVFDEIVDRNIVSWNSLLAGYVRCGDV 201

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR +F+  P+R+VV+W+ +I+G AQ G+  +A+ +F +M    V+ D+  LV+ +SAC
Sbjct: 202 DGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSAC 261

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDV 397
           +++G+L L  W+ SY+       ++  +++   +L+ M A CG +D+A ++F  M  R  
Sbjct: 262 AELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRST 321

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL---TPDEVAFTIVLTACSHVGLVEDGWRF 454
           +S+ SMI G +  GH  +A+ +F  M   G     PD + F  VL ACSH G V+ G  F
Sbjct: 322 ISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHF 381

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           FE M   + IVP  EHY CMVDLL R G L  A+ L+ SMP++P+ + WGALLG C+++ 
Sbjct: 382 FECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHK 441

Query: 515 DIELGELVANRL-FELEP-QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + EL   VA +L  EL+P Q AG  VLLSN+YATA RW DV LVR KM E G+RK  G S
Sbjct: 442 NAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRS 501


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 221/683 (32%), Positives = 333/683 (48%), Gaps = 125/683 (18%)

Query: 1   MPKIDEPNTPCKHKSCSSMLPNCSRSAPIN-FPKPSCLLSALTLIKKCKLQTHLHQVHSH 59
           +P+I  PN P +H+   S         P N +  P+ LL     +++C     L Q+   
Sbjct: 11  VPQI--PNPPSRHRHFLSE----RNYIPANVYEHPAALL-----LERCSSLKELRQILPL 59

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
           + K GL Q+H      +SL     + +  +  VF  I +    L++T+LKG+++ S   +
Sbjct: 60  VFKNGLYQEHFFQTKLVSLFCRYGS-VDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
               FVR+  ++  P  Y F  ++K C     +R G  IH  +++ G   D+F  T L +
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAK----------T 223
           +Y K ++++ ARKVFD MPER++VSW  ++ GY+  G      ++V++           T
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238

Query: 224 VFDLMPERS------------------------NVSWNALIGGLVKIGDLRSARQLFDEM 259
           +  ++P  S                        N+S  AL+    K G L +ARQLFD M
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS-TALVDMYAKCGSLETARQLFDGM 297

Query: 260 PERNVVSYTTMIDGY-----------------------------------AKVGDMTSAR 284
            ERNVVS+ +MID Y                                   A +GD+   R
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 285 SL----FEAAPDRDVVAWSALIS-------------------------------GYAQNG 309
            +     E   DR+V   ++LIS                               G+AQNG
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           +P +A+  FS M S+ V+PD F  VS+++A +++     + W+   + RS +D     V 
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLD-KNVFVT 476

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            ALVDM AKCG +  A  +F+ M  R V ++ +MI G   HG G+ A+ LF+ M    + 
Sbjct: 477 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 536

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           P+ V F  V++ACSH GLVE G + F  M+  Y+I  S +HY  MVDLLGR G L  A++
Sbjct: 537 PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWD 596

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MPV+P  + +GA+LGAC+++ ++   E  A RLFEL P + G +VLL+NIY  A  
Sbjct: 597 FIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASM 656

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W  V  VR  M  +GLRK PGCS
Sbjct: 657 WEKVGQVRVSMLRQGLRKTPGCS 679


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 290/512 (56%), Gaps = 46/512 (8%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLI--REEAVPDKYTFPLVIKAC--SHVLSVREGTAIH 159
           W  L+K Y+  S   E   ++ R +  R    P     P+++KA   S    +  G ++H
Sbjct: 23  WAHLVKEYASQSLVREAALVYARNLPRRTHHQP---LLPVLLKAAAASSPAELGLGKSLH 79

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS--------------- 204
           A  ++     D+ VGT+++ +Y K   ++ AR+ FDEMP+RNV+S               
Sbjct: 80  AEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMD 139

Query: 205 ----------------WTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKI 246
                           W  +I G+A  GD+ EA+  F+  P   R+ V+W  L+ G V  
Sbjct: 140 GALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCA 199

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +AR++FD MP RN   +++M+ GY K GD   AR++F+  P R++V W+ALI+GYA
Sbjct: 200 GDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYA 259

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           Q G  ++A++ F  M  + V+PDEF + SL+SAC+Q+G+L+    V  ++++ H+  +  
Sbjct: 260 QIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNH- 318

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            V+  L+DM AKCG++  A  +F++M  ++   + +MI  L+ HG   +A+ LF +M   
Sbjct: 319 FVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERS 378

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G  P+ +    VL AC+H G V++G + F  + + Y +    EHY C+VDLLGR G LK 
Sbjct: 379 GRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVEAGVEHYGCLVDLLGRAGKLKE 437

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS----YVLLSN 542
           AYE++N+M  EP+   WG+LLGAC+++ D E+  LV   +  L   +A S    Y++L+N
Sbjct: 438 AYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIMLAN 497

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           I A ++RW     +R KM  RG+ K PGCSSL
Sbjct: 498 IMAASERWEQAEQMRRKMARRGVEKTPGCSSL 529



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 36/277 (12%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + AVF+RI   N   WN L+ GY+Q     +    F  +++E   PD++T   ++ AC+ 
Sbjct: 236 ARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQ 295

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + S+ +G  +H  + +  + ++ FV   LID+Y K  +++ AR +FD M  +N   W  M
Sbjct: 296 LGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTM 355

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPERN 263
           I   AS G   EA  +F  M ERS    N     A++G     G +    Q+F++     
Sbjct: 356 ISALASHGQSDEALHLFFQM-ERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNK----- 409

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                  +D Y             EA     V  +  L+    + G+  EA +I ++M  
Sbjct: 410 -------LDAYG-----------VEAG----VEHYGCLVDLLGRAGKLKEAYEIVNNMSE 447

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
              +P+E I  SL+ AC    + ++S  V   + R H
Sbjct: 448 ---EPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLH 481



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+  C     L Q   VH  I ++ + ++H ++   I + ++    L+++  +F+ +  
Sbjct: 288 SLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDM-YAKCGDLAHARYIFDSMRW 346

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   WNT++   + + +  E   +F ++ R    P+  T   V+ AC+H   V EG  I
Sbjct: 347 KNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQI 406

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
              +  +GV+  V     L+DL G+  ++  A ++ + M E  N V W +++
Sbjct: 407 FNKLDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLL 458



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 20/248 (8%)

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL-MSACSQV 343
           +++  +   D   W+ L+  YA      EA  +++    +       + V L  +A S  
Sbjct: 10  AIYMTSSSHDPDKWAHLVKEYASQSLVREAALVYARNLPRRTHHQPLLPVLLKAAAASSP 69

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAA-LVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
             L L   + +   +S    +R  ++   +V M  KCG +  A   F+ MP+R+V+SY +
Sbjct: 70  AELGLGKSLHAEALKS--AFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNA 127

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA----M 458
           ++ G ++ G    A++LF  M S       V +  ++   +  G + +  R+FEA    M
Sbjct: 128 LLAGYAVAGDMDGALALFGGMRSW----THVTWATLIRGFAEKGDMAEARRWFEATPPGM 183

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           + V       + Y C        G +++A E+ + MP   +A  W +++       D E 
Sbjct: 184 RTVVTWTVLVQGYVC-------AGDMETAREVFDRMPAR-NAFVWSSMVTGYFKAGDAEE 235

Query: 519 GELVANRL 526
              V +R+
Sbjct: 236 ARAVFDRI 243


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 285/489 (58%), Gaps = 9/489 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+R+   +   WNT++ G+SQN    +   + +R+  E   PD  T   V+ A + V  
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G +IH   IR G  + V + T+L D+Y K   +  AR +FD M ++ VVSW +M+ G
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDG 323

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           Y   G+  +A  VF+ M E     + V+    +     +GDL   + +   + + N+ S 
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSD 383

Query: 267 ---YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                ++I  Y+K   +  A  +F     R  V+W+A+I GYAQNG+  EA+  FS+M S
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKS 443

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             ++PD F +VS++ A +++     + W+   + RS +D     V  ALVDM +KCG + 
Sbjct: 444 LGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD-KNIFVTTALVDMYSKCGAIH 502

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A +LF+ + +R V+++ +MI G   HG GR A+ LFD+M    + P+++ +  V++ACS
Sbjct: 503 MARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV++G R F++M+  Y + PS +HY  MVDLLGR G +K A++ + +MP+ P  + +
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GA  GACK++ +IE+GE  A +LFEL P   G +VLL+NIYA+  +W  V  VR  M+++
Sbjct: 623 GAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKK 682

Query: 564 GLRKIPGCS 572
           GL+K PGCS
Sbjct: 683 GLKKTPGCS 691



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 248/511 (48%), Gaps = 42/511 (8%)

Query: 20  LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC 79
           LP  + S   + P       A  L++ C     LHQ+   +IK GL  +H      +SL 
Sbjct: 32  LPFHTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLF 91

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
               + ++ +  VF  I +    L++T+LKGY++NS          R+  ++  P  Y F
Sbjct: 92  SKYGS-INEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             ++K C     ++ G  IH  +I      +VF  T ++++Y K ++I  A K+FD MPE
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 200 RNVVSWTAMIVGYASVG------DLV----------EAKTVFDLMPERSNVSWNALIGGL 243
           R++VSW  +I G++  G      +LV          ++ T+  ++P  ++V       GL
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADV-------GL 263

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           + +G       +     +   +S T + D Y+K G + +AR +F+    + VV+W++++ 
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNIS-TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           GY QNG+P++A+ +F  M  + + P    ++  + AC+ +G+L+   +V  ++ + ++  
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG- 381

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S   V+ +L+ M +KC  +D A+++F  +  R  VS+ +MI G + +G   +A++ F  M
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM-------QNVYAIVPSPEHYACMVD 476
            S G+ PD      V+ A + + +     ++   +       +N++           +VD
Sbjct: 442 KSLGMKPDSFTMVSVIPALAELSVTRHA-KWIHGLIIRSCLDKNIFVTT-------ALVD 493

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +  + G +  A +L + M  + H   W A++
Sbjct: 494 MYSKCGAIHMARKLFD-MISDRHVITWNAMI 523



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  + +  L  D S++   IS+ +S    +  ++ +FN +       WN ++ GY+QN 
Sbjct: 371 VHKFVDQLNLGSDISVMNSLISM-YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNG 429

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           R  E    F  +      PD +T   VI A + +   R    IH  +IR  +D+++FV T
Sbjct: 430 RVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTT 489

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ER 231
           +L+D+Y K   I  ARK+FD + +R+V++W AMI GY + G    A  +FD M     E 
Sbjct: 490 ALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEP 549

Query: 232 SNVSWNALI-----GGLVKIG--DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           +++++ ++I      GLV  G    +S +Q +   P  +   Y  M+D   + G +  A 
Sbjct: 550 NDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMD--HYGAMVDLLGRAGRIKEAW 607

Query: 285 SLFEAAP 291
              E  P
Sbjct: 608 DFIENMP 614


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 283/487 (58%), Gaps = 36/487 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV----PDKYTFPL 141
           ++++  VF++I  P+ F++NTL++G +  +   +  +++ R++R        PDK TFP 
Sbjct: 28  IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V++AC+ + +   G  +HA V++ G + D FV  +LI ++                    
Sbjct: 88  VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH-------------------- 127

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
                      AS G+L  A  +FD       V+W+A+I G  + GD+ +AR LFDE P 
Sbjct: 128 -----------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPV 176

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           +++VS+  MI  YAK GDM  AR LF+  P+RDVV+W+ +ISGY + G    A+++F  M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCG 380
                +PD   ++SL+SAC+  G+LD+   + S LS          V+  AL+DM AKCG
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +M  A E+F +M ++DV ++ S++ GL++HGH  +++ +F++ML   + PDE+ F  VL 
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH G+V+ G  FF  MQ+ Y + P+ +HY CMVD+LGR G LK A+E +++M  EP++
Sbjct: 357 ACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNS 416

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W  LL AC+++ +IEL +    +L +     +G YVLLSNIYA+   W     +R  M
Sbjct: 417 VIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLM 476

Query: 561 KERGLRK 567
            + G+ K
Sbjct: 477 DDSGVNK 483



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 164/370 (44%), Gaps = 55/370 (14%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+H++K G E D + V + +   H+    L  + A+F+     +   W+ ++ G ++ 
Sbjct: 103 QVHAHVVKAGCESD-AFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARR 161

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   +F     E  V D                          ++ W V       
Sbjct: 162 GDIGAARDLF----DECPVKD--------------------------LVSWNV------- 184

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
             +I  Y KR +++ AR++FD++PER+VVSW  MI GY   G  + A  +F+ M      
Sbjct: 185 --MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEK 242

Query: 234 ---VSWNALIGGLVKIGDLRSARQL---FDEMPERN---VVSYTTMIDGYAKVGDMTSAR 284
              V+  +L+      GDL   ++L     +M  RN   VV    +ID YAK G M SA 
Sbjct: 243 PDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAH 302

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F +  D+DV  W++++ G A +G   E++ +F  M    V+PDE   V+++ ACS  G
Sbjct: 303 EVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGG 362

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDVVSYC 401
            +D      + +   +           +VDM  + G +  A E  +TM   PN   V + 
Sbjct: 363 MVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNS--VIWR 420

Query: 402 SMIKGLSIHG 411
           +++    +HG
Sbjct: 421 TLLSACRVHG 430



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 134/309 (43%), Gaps = 44/309 (14%)

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF----------EAAPDRDVV 296
           G +  A  +FD++P  +   Y T+I G A       A SL+             PD+  +
Sbjct: 26  GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDK--L 83

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            +  ++      G  D  V++ + +     + D F+  +L+   +  GNL ++  +  + 
Sbjct: 84  TFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL--FD 141

Query: 357 SRSHMDL----------SRAHVIAALVDMNAKC------------------GNMDRAAEL 388
            R+  D           +R   I A  D+  +C                  G+M  A EL
Sbjct: 142 GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALAREL 201

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+ +P RDVVS+  MI G    G    A+ LF++M   G  PD V    +L+AC+  G +
Sbjct: 202 FDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDL 261

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           + G R   ++ ++++    P      ++D+  + G +KSA+E+  SM  +   S W +++
Sbjct: 262 DVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR-DKDVSTWNSIV 320

Query: 508 GACKLYSDI 516
           G   L+  +
Sbjct: 321 GGLALHGHV 329


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 291/527 (55%), Gaps = 13/527 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ ++K GL  D  + +  + + ++       +  +FN +   +   WNT++  Y Q+ 
Sbjct: 128 IHTCLVKTGLMMDIVVGSSLVGM-YAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSG 186

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            F E    F  + R    P+  T    I +C+ +L +  G  IH  +I  G   D F+ +
Sbjct: 187 NFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISS 246

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           +L+D+YGK   +  A +VF++MP++ VV+W +MI GY   GD +    +F  M       
Sbjct: 247 ALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKP 306

Query: 236 WNALIGGLVKIGDLRSARQLFDEMP---------ERNVVSYTTMIDGYAKVGDMTSARSL 286
               +  L+ +   RSAR L  +           + +V   ++++D Y K G +  A ++
Sbjct: 307 TLTTLSSLIMVCS-RSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENI 365

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+  P   VV+W+ +ISGY   G+  EA+ +FS+M    V+PD     S+++ACSQ+  L
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAAL 425

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +    + + +    +D +   V+ AL+DM AKCG +D A  +F+ +P RD+VS+ SMI  
Sbjct: 426 EKGEEIHNLIIEKKLDNNEV-VMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITA 484

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              HG    A+ LF  ML   + PD V F  +L+AC H GLV++G  +F  M NVY I+P
Sbjct: 485 YGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIP 544

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALLGACKLYSDIELGELVANR 525
             EHY+C++DLLGR G L  AYE+L   P +         L  AC+L+ +I+LG  +A  
Sbjct: 545 RVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIART 604

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L + +P ++ +Y+LLSN+YA+A +W +V +VRSKMKE GL+K PGCS
Sbjct: 605 LIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCS 651



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 242/488 (49%), Gaps = 29/488 (5%)

Query: 41  LTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFN 94
           L L++ C     L Q   +H  ++  GL+ D  L  + I+L   CH       ++  VF+
Sbjct: 7   LPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCH----LYDHAKCVFD 62

Query: 95  RIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSV 152
            + NP    LWN L+ GY++N  ++E   +F +L+    + PD YT+P V+KAC  +   
Sbjct: 63  NMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKY 122

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  IH  +++ G+  D+ VG+SL+ +Y K      A  +F+EMPE++V  W  +I  Y
Sbjct: 123 VLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCY 182

Query: 213 ASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--S 266
              G+  EA   F LM     E ++V+    I    ++ DL    ++ +E+     +  S
Sbjct: 183 YQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDS 242

Query: 267 Y--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +  + ++D Y K G +  A  +FE  P + VVAW+++ISGY   G     +++F  M ++
Sbjct: 243 FISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNE 302

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+P    L SL+  CS+   L    +V  Y  R+ +  S   + ++L+D+  KCG ++ 
Sbjct: 303 GVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQ-SDVFINSSLMDLYFKCGKVEL 361

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F+ +P   VVS+  MI G    G   +A+ LF  M    + PD + FT VLTACS 
Sbjct: 362 AENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQ 421

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACM---VDLLGRTGHLKSAYELLNSMPVEPHAS 501
           +  +E G    E + N+        +   M   +D+  + G +  A+ +   +P     S
Sbjct: 422 LAALEKG----EEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVS 477

Query: 502 AWGALLGA 509
            W +++ A
Sbjct: 478 -WTSMITA 484


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/527 (34%), Positives = 291/527 (55%), Gaps = 13/527 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ +IK GL  D  + +  + + +        +  +FN +   +   WNT++  Y Q+ 
Sbjct: 128 IHTCLIKTGLMMDIVVGSSLVGM-YGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSG 186

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            F +    F  + R    P+  T    I +C+ +L +  G  IH  +I  G   D F+ +
Sbjct: 187 NFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISS 246

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           +L+D+YGK   +  A ++F++MP++ VV+W +MI GY   GD++    +F  M       
Sbjct: 247 ALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKP 306

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPE----RN-----VVSYTTMIDGYAKVGDMTSARSL 286
               +  L+ +   RSAR L  +       RN     V   ++++D Y K G +  A  +
Sbjct: 307 TLTTLSSLIMVCS-RSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKI 365

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+  P   VV+W+ +ISGY   G+  EA+ +FS+M    V+ D     S+++ACSQ+  L
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAAL 425

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +    + + +    +D +   V+ AL+DM AKCG +D A  +F+ +P RD+VS+ SMI  
Sbjct: 426 EKGKEIHNLIIEKKLDNNEV-VMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITA 484

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              HGH   A+ LF  ML   + PD VAF  +L+AC H GLV++G  +F  M NVY I+P
Sbjct: 485 YGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIP 544

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALLGACKLYSDIELGELVANR 525
             EHY+C++DLLGR G L  AYE+L   P +         L  AC+L+ +I+LG  +A  
Sbjct: 545 RVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIART 604

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L + +P ++ +Y+LLSN+YA+A +W +V +VRSKMKE GL+K PGCS
Sbjct: 605 LIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCS 651



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/520 (29%), Positives = 248/520 (47%), Gaps = 56/520 (10%)

Query: 41  LTLIKKCKLQTHLHQ---VHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVF 93
           L L++ C     L Q   +H  ++  GL+ D     +L+  ++S CH       ++  VF
Sbjct: 7   LPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLS-CH----LYDHAKCVF 61

Query: 94  NRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLS 151
           + + NP    LWN L+ GY++N  ++E   +F +L+    + PD YT+P V KAC  +  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              G  IH  +I+ G+  D+ VG+SL+ +YGK      A  +F+EMPE++V  W  +I  
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 212 YASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV-- 265
           Y   G+  +A   F LM     E ++V+    I    ++ DL    ++ +E+     +  
Sbjct: 182 YYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 266 SY--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           S+  + ++D Y K G +  A  +FE  P + VVAW+++ISGY   G     +++F  M +
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYN 301

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V+P    L SL+  CS+   L    +V  Y  R+ +      V ++L+D+  KCG ++
Sbjct: 302 EGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQ-PDVFVNSSLMDLYFKCGKVE 360

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A ++F+ +P   VVS+  MI G    G   +A+ LF  M    +  D + FT VLTACS
Sbjct: 361 LAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACS 420

Query: 444 HVGLVEDGWRFFE---------------AMQNVYAIVPSPEH----YAC----------- 473
            +  +E G                    A+ ++YA   + +     + C           
Sbjct: 421 QLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTS 480

Query: 474 MVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGAC 510
           M+   G  GH   A EL   M    V+P   A+ A+L AC
Sbjct: 481 MITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSAC 520


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 213/647 (32%), Positives = 334/647 (51%), Gaps = 112/647 (17%)

Query: 33  KPSCLLSAL-TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP---LSY 88
           KP+  LS L T +  C      +++ S +I  G   D    +  +    S  +P   L Y
Sbjct: 36  KPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKF--STDSPFIGLDY 93

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS- 147
           S  +F+RI N N F+WNT+++ Y Q++   +   ++  +++    PD YT+PLV++AC+ 
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 153

Query: 148 ------------HVLSV----------------------REG---------------TAI 158
                       HVL V                      R+                 +I
Sbjct: 154 RLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSI 213

Query: 159 HAAVIRWG-VDE-----------DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
            A  ++ G V+E           ++    S+I L GK  ++  A K+F+EM E+++VSW+
Sbjct: 214 LAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWS 273

Query: 207 AMIVGYASVGDLVEAKTVFDLMPER-------------------SNVSWNALIGGLV--- 244
           A+I GY   G   EA  +F  M                      S V    +I GLV   
Sbjct: 274 ALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRM 333

Query: 245 -----------------KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
                              G++  A++LF+     + +S+ +MI G  K G +  AR+LF
Sbjct: 334 GIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALF 393

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P++D+V+WSA+ISGYAQ+    E + +F +M    ++PDE ILVS++SAC+ +  LD
Sbjct: 394 DVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALD 453

Query: 348 LSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
              WV +Y+ ++ +   + +VI    L+DM  KCG ++ A E+F  M  + V S+ ++I 
Sbjct: 454 QGKWVHAYIRKNGL---KVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALII 510

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL+++G   +++ +F  M + G+ P+E+ F  VL AC H+GLV++G   F +M   + I 
Sbjct: 511 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 570

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+ +HY CMVDLLGR G L  A +L+ SMP+ P  + WGALLGACK + D E+GE V  +
Sbjct: 571 PNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRK 630

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L EL+P + G +VLLSNI+A+   W DV  VR  MK++G+ K PGCS
Sbjct: 631 LIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 677


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/534 (35%), Positives = 295/534 (55%), Gaps = 70/534 (13%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHF-ISLCHSLATPLSYSTAVFNRIVNPN 100
           +LI K K   HL Q+H+ ++++GL   H+ + +F +   ++    L  S  VFN    PN
Sbjct: 52  SLIDKSKSVAHLLQIHASLLRRGLY--HNPILNFKLQRSYAALGRLDCSVFVFNTFDEPN 109

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F ++ ++  + Q+  F   F  + +++     P+ +TF  V+K+C    S+  G  +H 
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKVLHC 165

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             I+ G+           DLY +                      T ++  YA  GD+V 
Sbjct: 166 QAIKLGLGS---------DLYVR----------------------TGLVDVYARGGDVV- 193

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                                          ARQLFD+MPER++VS TTM+  Y+K+G++
Sbjct: 194 ------------------------------CARQLFDKMPERSLVSLTTMLTCYSKMGEL 223

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             ARSLFE   +RDVV W+ +I GYAQ+G P+E++K+F  M      P+E  +++++SAC
Sbjct: 224 DKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSAC 283

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
            Q+G L+   W+ SY+    + ++  HV  AL+DM +KCG+++ A  +F+ + ++DVV++
Sbjct: 284 GQLGALESGRWIHSYIENKGIQIN-VHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAW 342

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            SMI G ++HG  + A+ LF+ M   G  P ++ F  +L+AC H GLVE+G  FF  M++
Sbjct: 343 NSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRD 402

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y I P  EHY CMV+LLGR GHL+ AY L+ +M +      WG LLG C+L+ +I+LGE
Sbjct: 403 KYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGE 462

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            +A  L + +  N+G+YVLLSN+YA    W  V  +R+ MKE G+ K  GCSS+
Sbjct: 463 EIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSI 516


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 288/490 (58%), Gaps = 9/490 (1%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  +  +  VF+ + + +T  WN+++ GY +N  F E   +F  +  +  V    ++  +
Sbjct: 60  AGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV----SWNSM 115

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           I  C     + E      A+ +     +     ++I    +   +  A ++F+EMP RNV
Sbjct: 116 IAGCIEDERIDEAWQYFQAMPQ----RNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV 171

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           +S+TAM+ GYA +G++ +A+ +F+ MP+++ VSW  +I G V+ G    A  LF++MP++
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK 231

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           N+V+ T MI GY K G    A+ LF+  P RD+ +W+A+I+GYAQNG  +EA+K+ S M 
Sbjct: 232 NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQML 291

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
              +QPD   L+S+++ACS + +L         + +S  + SR  +  AL+ M  KCG++
Sbjct: 292 KMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYE-SRISICNALITMYCKCGSI 350

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
             +   F  + + DVVS+ +MI   + HG   +A++ F  M S  + PD + F  +L+AC
Sbjct: 351 LDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSAC 410

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
            H G V +   +F +M   Y IV  PEH+AC+VD+L R G ++ AY+++  MP E     
Sbjct: 411 GHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 470

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           WGALL AC ++ +++LGEL A ++ ELEPQN+G+YV+LSNIYA A  W +V  VR  M+E
Sbjct: 471 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMRE 530

Query: 563 RGLRKIPGCS 572
           +G++K P  S
Sbjct: 531 QGVKKQPAYS 540



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 159/327 (48%), Gaps = 71/327 (21%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
            H   I+    +DV+     I    +   I  AR+VFDEMP R+ VSW ++I GY   G 
Sbjct: 34  FHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGC 93

Query: 218 LVEAKTVFDL-------------------------------MPERSNVSWNALIGGLVKI 246
             E+K +F L                               MP+R+  SWNA+I GLV+ 
Sbjct: 94  FDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRY 153

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             +  A +LF+EMP RNV+SYT M+DGYAK+G++  AR+LF   P ++VV+W+ +ISGY 
Sbjct: 154 DRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYV 213

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           +NG+ DEA  +F  M  KN+                                        
Sbjct: 214 ENGKFDEAENLFEQMPDKNIV--------------------------------------- 234

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
             + A++    K G  D+A  LF+ +P RD+ S+ +MI G + +G G +A+ L  +ML  
Sbjct: 235 -AMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKM 293

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWR 453
           G+ PD      VLTACS +  +++G +
Sbjct: 294 GMQPDHSTLISVLTACSSLASLQEGRK 320



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 21/214 (9%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT------P 85
           P  S L+S LT            + H  ++K G E         IS+C++L T       
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESR-------ISICNALITMYCKCGS 349

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +  S   F +I +P+   WN ++  ++++  +      F  +      PD  TF  ++ A
Sbjct: 350 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409

Query: 146 CSHVLSVREGTA-IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVV 203
           C H   V E     ++ +  + +         L+D+  +  ++  A K+  EMP E +  
Sbjct: 410 CGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCG 469

Query: 204 SWTAMIVG-----YASVGDLVEAKTVFDLMPERS 232
            W A++          +G+L  AK + +L P+ S
Sbjct: 470 IWGALLAACHVHLNVKLGELA-AKKIVELEPQNS 502


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/483 (37%), Positives = 276/483 (57%), Gaps = 19/483 (3%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WNT L+  ++  +F++  +++ +++R    P+ +TFP  +K+C+ +     G+  H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEA 221
           + G   + FV T LI +Y K   +  ARKVF+E     +  V + A++ GY S     EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 222 KTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL--------FDEMPERNVVSYTT 269
             +F  M E     ++V+   LI   V   +L     L        FD     +V     
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDS----DVSVVNC 192

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
            I  Y K G +  A+ LF+  P + +++W+A++SGYAQNG     ++++ +M    V PD
Sbjct: 193 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPD 252

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              LV ++S+C+ +G   + + V+  +  S    S   +  AL++M A+CGN+ +A  +F
Sbjct: 253 PVTLVGVLSSCANLGAQSVGHEVEFKIQASGFT-SNPFLNNALINMYARCGNLTKAQAVF 311

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + MP R +VS+ ++I G  +HGHG  AV LF  M+  G+ PD  AF  VL+ACSH GL +
Sbjct: 312 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 371

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G  +F+ M+  Y + P PEHY+CMVDLLGR G LK A  L+ SMP++P  + WGALLGA
Sbjct: 372 QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CK++ ++EL EL   R+ ELEP+N G YVLLSNIY+ A+    V  +R  MKE+ L+K P
Sbjct: 432 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP 491

Query: 570 GCS 572
           GCS
Sbjct: 492 GCS 494



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 184/357 (51%), Gaps = 27/357 (7%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIH 159
           T  +N L+ GY  NS+  E   +F R + EE VP +  T   +I AC   +++  G+++H
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLF-RQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLH 175

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
            + +++G D DV V    I +Y K   ++ A+K+FDEMP + ++SW AM+ GYA  G   
Sbjct: 176 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNG--- 232

Query: 220 EAKTVFDLMPERSNVSWNA-------LIGGLVKIGDLRSARQLFDEMPERNVVSYTT--- 269
            A  V +L     N+  N        L+G L    +L  A+ +  E+  +   S  T   
Sbjct: 233 LATNVLELY---RNMDMNGVHPDPVTLVGVLSSCANL-GAQSVGHEVEFKIQASGFTSNP 288

Query: 270 -----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                +I+ YA+ G++T A+++F+  P+R +V+W+A+I GY  +G  + AV++F +M   
Sbjct: 289 FLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRS 348

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            ++PD    V ++SACS  G  D        + R++         + +VD+  + G +  
Sbjct: 349 GIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKE 408

Query: 385 AAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           A  L E+MP + D   + +++    IH +   A   F+R++   L P+ + + ++L+
Sbjct: 409 AQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLS 463


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/525 (36%), Positives = 294/525 (56%), Gaps = 11/525 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ + K G E D  +   F+++ +     +      F  ++  N    N LL G+    
Sbjct: 112 IHACVCKYGFESDILISNAFVTM-YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTE 170

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +   I ++L+ E   P+ YTF  ++K C+    + EG AIH  VI+ G++ D  +  
Sbjct: 171 TCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWN 230

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           SL+++Y K    + A KVF E+PER+VVSWTA+I G+ + G     +    ++ E  N +
Sbjct: 231 SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEGFNPN 290

Query: 236 WNALIGGL--------VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
               I  L        V +G    A+ + + +   + V  T ++D YAK   +  A ++F
Sbjct: 291 MYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG-TALVDMYAKNRFLEDAETIF 349

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
                RD+ AW+ +++GYAQ+GQ ++AVK F  M  + V+P+EF L S +S CS++  LD
Sbjct: 350 NRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLD 409

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               + S   ++        V +ALVDM AKCG ++ A  +F+ + +RD VS+ ++I G 
Sbjct: 410 SGRQLHSMAIKAGQS-GDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGY 468

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           S HG G +A+  F+ ML EG  PDEV F  VL+ACSH+GL+E+G + F ++  +Y I P+
Sbjct: 469 SQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPT 528

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHYACMVD+LGR G        +  M +  +   W  +LGACK++ +IE GE  A +LF
Sbjct: 529 IEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLF 588

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELEP+   +Y+LLSN++A    W DV  VR+ M  RG++K PGCS
Sbjct: 589 ELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCS 633



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 151/298 (50%), Gaps = 10/298 (3%)

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           VI+ G+  D  + +SL+++Y K + + CAR+V +EMP ++V  W   +    S   L EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 222 KTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDG 273
             +F LM       +   + +LI     +GD      +   +     E +++     +  
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K   + +    F+A    ++ + + L+SG+      D+  +I   +  +  +P+ +  
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +S++  C+  G+L+    +   + +S ++   +H+  +LV++ AKCG+ + A ++F  +P
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGIN-PDSHLWNSLVNVYAKCGSANYACKVFGEIP 253

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            RDVVS+ ++I G    G+G   + +F++ML+EG  P+   F  +L +CS +  V+ G
Sbjct: 254 ERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 305/562 (54%), Gaps = 48/562 (8%)

Query: 55  QVHSHIIKKGLEQD---HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           QVH  ++K GLE+D    + + HF + C  +     +   VF  +   N   W +L+ GY
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHM----DHGHKVFEGMSERNVVSWTSLICGY 207

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           ++  R  E  ++F  ++     P   T   VI AC+ +  +  G  + A +   G+  + 
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM--- 228
            +  +L+D+Y K   I  A+++FDE  +RN+V +  ++  YA  G   EA  + D M   
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 229 ---PERSNV-----------------------------SW----NALIGGLVKIGDLRSA 252
              P+R  +                              W    N +I   +K G    A
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
            ++FD M  + VVS+ ++  G+ + GD+ SA  +F   P+R+ V W+ +ISG  Q    +
Sbjct: 388 CRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFE 447

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           +A+++F +M  + ++ D   ++ + SAC  +G  +L+ WV +Y+ ++ +      +  AL
Sbjct: 448 DAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCD-MRLNTAL 506

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM A+CG+   A ++F  M  RDV ++ + I  +++ G+G  A  LF++ML +G+ PD 
Sbjct: 507 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV 566

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           V F  VLTACSH G VE G   F  M++ + I P  EHY CMVDLLGR G L+ A++L+ 
Sbjct: 567 VLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIK 625

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           SMP+EP+   WG+LL AC+++ ++E+    A R+ EL PQ AG +VLLSNIYA+A +W D
Sbjct: 626 SMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTD 685

Query: 553 VCLVRSKMKERGLRKIPGCSSL 574
           V  VR  ++E+G+RK+PG SS+
Sbjct: 686 VARVRLNLREKGVRKVPGSSSV 707



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 154/542 (28%), Positives = 252/542 (46%), Gaps = 54/542 (9%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYST 90
           K SCL  +L   + CK    L Q+H  I K GL+Q  S +   ++    +A+P  L Y+ 
Sbjct: 24  KDSCLNESL---RCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 91  AVFNRI-----VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
             F         +   F+ N+L++GYS      E   ++VR++     P+ YTFP V+  
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG 140

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + +  EG  +H +V++ G++EDVF+   LI  Y +   +    KVF+ M ERNVVSW
Sbjct: 141 CTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSW 200

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           T++I GYA      EA ++F  M E     S+V+   +I    K+ DL    ++   + E
Sbjct: 201 TSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGE 260

Query: 262 ----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                N V    ++D Y K G + +A+ LF+   DR++V ++ ++S YA+ G   EA+ I
Sbjct: 261 LGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAI 320

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
             +M  +  +PD   ++S +SA +Q+ +L        Y+ R+ ++     +   ++DM  
Sbjct: 321 LDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLE-GWDSIGNVIIDMYM 379

Query: 378 KCGNMDRAAELFETMPNRDVVSYCS-------------------------------MIKG 406
           KCG  + A  +F+ M N+ VVS+ S                               MI G
Sbjct: 380 KCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISG 439

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE-DGWRFFEAMQNVYAIV 465
           L        A+ LF  M  EG+  D V    + +AC ++G  E   W      +N   I 
Sbjct: 440 LVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKN--GIP 497

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
                   +VD+  R G  +SA ++ N M  E   SAW A +G   +  + E    + N+
Sbjct: 498 CDMRLNTALVDMFARCGDPQSAMQVFNKM-TERDVSAWTAAIGTMAMEGNGEGATGLFNQ 556

Query: 526 LF 527
           + 
Sbjct: 557 ML 558



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 204/446 (45%), Gaps = 49/446 (10%)

Query: 36  CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           C++SA   ++   +     +V ++I + GL+ +  +V   + + +     +  +  +F+ 
Sbjct: 237 CVISACAKLRDLDMG---ERVCAYIGELGLKLNKVMVNALVDM-YMKCGAIDAAKRLFDE 292

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
            V+ N  L+NT+L  Y++     E   I   ++++   PD+ T    I A + ++ +  G
Sbjct: 293 CVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYG 352

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
              H  VIR G++    +G  +ID+Y K  +   A +VFD M  + VVSW ++  G+   
Sbjct: 353 KVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRN 412

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------------- 260
           GD+  A  VF+ +PER+ V WN +I GLV+      A +LF EM                
Sbjct: 413 GDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIA 472

Query: 261 -------------------ERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                              E+N +       T ++D +A+ GD  SA  +F    +RDV 
Sbjct: 473 SACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVS 532

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           AW+A I   A  G  + A  +F+ M  + V+PD  + V +++ACS  G ++    + S +
Sbjct: 533 AWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM 592

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR--DVVSYCSMIKGLSIHGHGR 414
               +     H    +VD+  + G +  A +L ++MP    DVV + S++    +H +  
Sbjct: 593 EDHGISPQIEHY-GCMVDLLGRAGLLREAFDLIKSMPMEPNDVV-WGSLLAACRVHKNVE 650

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLT 440
            A    +R+    L P      ++L+
Sbjct: 651 MATYAAERI--NELAPQRAGVHVLLS 674


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/495 (36%), Positives = 287/495 (57%), Gaps = 53/495 (10%)

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183
           + R++   A+PD YTFP ++KA +   S     A+HA V+++G+  +  V TSL+  Y  
Sbjct: 31  YARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAA 90

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVG----------------------------YASV 215
             + + AR +  E      V W A+I G                            Y SV
Sbjct: 91  GGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSV 150

Query: 216 ------------------GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
                             G +V +  + DL  E      NAL+    +  D+ SA +LFD
Sbjct: 151 LSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVE------NALVDMYAECADMESAWKLFD 204

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
            M  R+VVS+T+++ G  ++G +  AR LF   P+RD V+W+A+I GY Q  +  EA+++
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F +M   NV  DEF +VS+++AC+Q+G L++  WV  Y+SR  + +  A V  AL+DM +
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMD-AFVGNALIDMYS 323

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG+++RA ++F+ M +RD  ++ ++I GL+++G+G +A+ +F RM+    TPDEV F  
Sbjct: 324 KCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIG 383

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           VLTAC+H GLV+ G  FF +M+  Y I P+  HY C++DL GR G +  A + ++ MP+ 
Sbjct: 384 VLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMT 443

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           P+++ WG LL AC+++ + E+GELV  RL +++P+N+  Y LLSNIYA  +RW DV  +R
Sbjct: 444 PNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLR 503

Query: 558 SKMKERGLRKIPGCS 572
             + E+G++K PGCS
Sbjct: 504 HTIMEKGIKKEPGCS 518



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 191/416 (45%), Gaps = 46/416 (11%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           +  VH+H++K G+ ++  +    ++   +     +    +  R       +WN L+ G++
Sbjct: 62  VRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSER-ERDTPVVWNALISGHN 120

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH-VLSVREGTAIHAAVIRWGVDEDV 171
           +  RF E    FV + R  A P   T+  V+ AC      V  G  +H  V+  GV  D+
Sbjct: 121 RCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDL 180

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            V  +L+D+Y +  ++  A K+FD M  R+VVSWT+++ G   +G + EA+ +F  MPER
Sbjct: 181 RVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPER 240

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-------VSYTT--------------- 269
             VSW A+I G V+    R A ++F EM   NV       VS  T               
Sbjct: 241 DTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVR 300

Query: 270 -----------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                            +ID Y+K G +  A  +F+    RD   W+A+I G A NG  +
Sbjct: 301 VYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGE 360

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--A 370
           EA+++F  M   +  PDE   + +++AC+  G +D     + +LS         +V+   
Sbjct: 361 EAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGR--EFFLSMRETYNIAPNVVHYG 418

Query: 371 ALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            ++D+  + G +  A +  + MP   +   + +++    +HG+      + +R+L 
Sbjct: 419 CIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQ 474


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 289/482 (59%), Gaps = 10/482 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   N   W  L+KGY  N +     ++F ++  +    +K ++ +++        
Sbjct: 101 VFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDGR 156

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +   ++  +     D+D    TS+I    K   +  AR++FDEM ER+V++WT M+ G
Sbjct: 157 IDDACKLYEMI----PDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTG 212

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y     + +A+ +FD+MPE++ VSW +++ G V+ G +  A +LF+ MP + V++   MI
Sbjct: 213 YGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMI 272

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            G  + G++  AR +F++  +R+  +W  +I  + +NG   EA+ +F  M  + V+P   
Sbjct: 273 SGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFP 332

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            L+S++S C+ + +L     V + L R   D+   +V + L+ M  KCG + ++  +F+ 
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVD-VYVASVLMTMYIKCGELVKSKLIFDR 391

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM-LSEGLTPDEVAFTIVLTACSHVGLVED 450
            P++D++ + S+I G + HG G +A+ +F  M LS    P+EV F   L+ACS+ G+VE+
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEE 451

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G + +E+M++V+ + P   HYACMVD+LGR G    A E+++SM VEP A+ WG+LLGAC
Sbjct: 452 GLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGAC 511

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + +S +++ E  A +L E+EP+N+G+Y+LLSN+YA+  RW DV  +R  MK R +RK PG
Sbjct: 512 RTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPG 571

Query: 571 CS 572
           CS
Sbjct: 572 CS 573



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 137/234 (58%), Gaps = 9/234 (3%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           ARK+FDEMP+RN++SW  ++ GY   G++ EA+ VFDLMPER+ VSW AL+ G V  G +
Sbjct: 67  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             A  LF +MPE+N VS+T M+ G+ + G +  A  L+E  PD+D +A +++I G  + G
Sbjct: 127 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEG 186

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           + DEA +IF +M  ++V        ++++   Q   +D +  +   +     ++S   ++
Sbjct: 187 RVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSML 241

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
              V    + G ++ A ELFE MP + V++  +MI GL   G   +A  +FD M
Sbjct: 242 MGYV----QNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSM 291



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 152/284 (53%), Gaps = 9/284 (3%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D ++     L+  Y K  EI  ARKVFD MPERNVVSWTA++ GY   G +  A+++F  
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPE++ VSW  ++ G ++ G +  A +L++ +P+++ ++ T+MI G  K G +  AR +F
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIF 195

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   +R V+ W+ +++GY QN + D+A KIF  M  K     E    S++    Q G ++
Sbjct: 196 DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKT----EVSWTSMLMGYVQNGRIE 251

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                D+      M +       A++    + G + +A  +F++M  R+  S+ ++IK  
Sbjct: 252 -----DAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIH 306

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
             +G   +A+ LF  M  +G+ P       +L+ C+ +  +  G
Sbjct: 307 ERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 162/324 (50%), Gaps = 54/324 (16%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I  ARK+FD    +++ SW +M+ GY +     +A+ +FD MP+R+ +SWN L+ G +K
Sbjct: 32  KIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMK 91

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G++  AR++FD MPERNVVS+T ++ GY   G +  A SLF   P+++ V+W+ ++ G+
Sbjct: 92  NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGF 151

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            Q+G+ D+A K++  +  K+                                    +++R
Sbjct: 152 LQDGRIDDACKLYEMIPDKD------------------------------------NIAR 175

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             +I  L     K G +D A E+F+ M  R V+++ +M+ G   +     A  +FD M  
Sbjct: 176 TSMIHGL----CKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE 231

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGH 483
           +     EV++T +L      G +ED    FE M       P     AC  M+  LG+ G 
Sbjct: 232 K----TEVSWTSMLMGYVQNGRIEDAEELFEVM-------PVKPVIACNAMISGLGQKGE 280

Query: 484 LKSAYELLNSMPVEPHASAWGALL 507
           +  A  + +SM  E + ++W  ++
Sbjct: 281 IAKARRVFDSMK-ERNDASWQTVI 303



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 30/334 (8%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N  I  L +IG +  AR+LFD    +++ S+ +M+ GY        AR LF+  PDR+++
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ L+SGY +NG+ DEA K+F  M  +NV        +L+      G +D++  +   +
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVS----WTALVKGYVHNGKVDVAESLFWKM 136

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
              +       +I  L D     G +D A +L+E +P++D ++  SMI GL   G   +A
Sbjct: 137 PEKNKVSWTVMLIGFLQD-----GRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEA 191

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
             +FD M    +    + +T ++T       V+D  + F+ M       P     +    
Sbjct: 192 REIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVM-------PEKTEVSWTSM 240

Query: 477 LLG--RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV-ANRLFE-LEPQ 532
           L+G  + G ++ A EL   MPV+P   A  A++         + GE+  A R+F+ ++ +
Sbjct: 241 LMGYVQNGRIEDAEELFEVMPVKP-VIACNAMISGLG-----QKGEIAKARRVFDSMKER 294

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           N  S+  +  I+      L+   +   M+++G+R
Sbjct: 295 NDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 8/208 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S L++        H  QVH+ +++   + D   VA  +   +     L  S  
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVD-VYVASVLMTMYIKCGELVKSKL 387

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRL-IREEAVPDKYTFPLVIKACSHVL 150
           +F+R  + +  +WN+++ GY+ +    E   +F  + +     P++ TF   + ACS+  
Sbjct: 388 IFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447

Query: 151 SVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM 208
            V EG  I+ ++   +GV         ++D+ G+    + A ++ D M  E +   W ++
Sbjct: 448 MVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSL 507

Query: 209 IVG--YASVGDLVE--AKTVFDLMPERS 232
           +      S  D+ E  AK + ++ PE S
Sbjct: 508 LGACRTHSQLDVAEFCAKKLIEIEPENS 535


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/524 (36%), Positives = 286/524 (54%), Gaps = 55/524 (10%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           WN+++  Y Q    I    +F R+  +  + PD  +   V+ AC+ V +   G  +H   
Sbjct: 217 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 276

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           +R G+ EDVFVG +++D+Y K   +  A KVF+ M  ++VVSW AM+ GY+ +G   +A 
Sbjct: 277 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 336

Query: 223 TVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGY 274
            +F+ + E     + V+W+A+I G  + G    A  +F +M     E NVV+  +++ G 
Sbjct: 337 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGC 396

Query: 275 AKVG-----------------------------------DMTS-------ARSLFEAAP- 291
           A  G                                   DM S       AR++F+  P 
Sbjct: 397 ASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 456

Query: 292 -DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDL 348
            DR VV W+ LI G AQ+G+ +EA+++FS M   +  V P+ F +   + AC+++G L  
Sbjct: 457 KDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRF 516

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
              + +Y+ R+  + +   V   L+DM +K G++D A  +F+ M  R+ VS+ S++ G  
Sbjct: 517 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 576

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
           +HG G +A+ +F  M    L PD V F +VL ACSH G+V+ G  +F  M   + +VP  
Sbjct: 577 MHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 636

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           EHYACMVDLL R G L  A EL+  MP++P  + W ALL AC++Y+++ELGE  AN+L E
Sbjct: 637 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 696

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LE  N GSY LLSNIYA A  W DV  +R  MK  G++K PGCS
Sbjct: 697 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCS 740



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 154/558 (27%), Positives = 260/558 (46%), Gaps = 87/558 (15%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           TL  +CK        H  ++ +GL  D +   H IS+  +  +P + + +V  R+ +P++
Sbjct: 53  TLFHQCKSLASAELTHQQLLVQGLPHDPT---HIISMYLTFNSP-AKALSVLRRL-HPSS 107

Query: 102 ---FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
              F WN L++         +V  ++ R+ R    PD YTFP V+KAC  + S R G ++
Sbjct: 108 HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 167

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV---VSWTAMIVGYASV 215
           HA V   G + +VFVG  L+ +YG+      AR+VFDEM ER V   VSW +++  Y   
Sbjct: 168 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 227

Query: 216 GDLVEAKTVFDLMPERSNV------------------SW--------------------- 236
           GD + A  +F+ M E   +                  +W                     
Sbjct: 228 GDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFV 287

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-- 293
            NA++    K G +  A ++F+ M  ++VVS+  M+ GY+++G    A  LFE   +   
Sbjct: 288 GNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 347

Query: 294 --DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
             +VV WSA+I+GYAQ G   EA+ +F  M     +P+   LVSL+S C+  G L     
Sbjct: 348 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKE 407

Query: 352 VDSYLSRSHMDLSRAH------VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSM 403
              +  +  ++L          VI AL+DM +KC +   A  +F+ +P  +R VV++  +
Sbjct: 408 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVEDGW--------- 452
           I G + HG   +A+ LF +ML     + P+    +  L AC+ +G +  G          
Sbjct: 468 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           RF  AM  V           C++D+  ++G + +A  + ++M  + +  +W +L+    +
Sbjct: 528 RFESAMLFV---------ANCLIDMYSKSGDVDAARVVFDNMH-QRNGVSWTSLMTGYGM 577

Query: 513 YSDIELGELVANRLFELE 530
           +     GE      +E++
Sbjct: 578 HGR---GEEALQIFYEMQ 592



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 158/314 (50%), Gaps = 20/314 (6%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   W+ ++ GY+Q     E   +F +++   + P+  T   ++  C+   ++  G   H
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 160 AAVIRW--GVDE-----DVFVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIV 210
              I+W   +DE     D+ V  +LID+Y K K    AR +FD +P  +R+VV+WT +I 
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469

Query: 211 GYASVGDLVEAKTVFDLMPERSN-VSWNAL-----IGGLVKIGDLRSARQ-----LFDEM 259
           G A  G+  EA  +F  M +  N V  NA      +    ++G LR  RQ     L +  
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
               +     +ID Y+K GD+ +AR +F+    R+ V+W++L++GY  +G+ +EA++IF 
Sbjct: 530 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 589

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           +M    + PD    V ++ ACS  G +D      + +++    +  A   A +VD+ ++ 
Sbjct: 590 EMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 649

Query: 380 GNMDRAAELFETMP 393
           G +D A EL   MP
Sbjct: 650 GRLDEAMELIRGMP 663



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 159/360 (44%), Gaps = 38/360 (10%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHS-------LVAHFISLCHSLAT 84
           P    L+S L+         H  + H H IK  L  D +       ++   I +     +
Sbjct: 384 PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKS 443

Query: 85  PLSYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFP 140
           P + + A+F+ I   + +   W  L+ G +Q+    E   +F ++++ +   +P+ +T  
Sbjct: 444 PKA-ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 502

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             + AC+ + ++R G  IHA V+R   +   +FV   LID+Y K  ++  AR VFD M +
Sbjct: 503 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ 562

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           RN VSWT+++ GY   G   EA  +F  M +   V       G+  +  L +        
Sbjct: 563 RNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVP-----DGVTFVVVLYAC------- 610

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
                 S++ M+D    +         F   P  +   ++ ++   ++ G+ DEA+++  
Sbjct: 611 ------SHSGMVD--QGINYFNGMNKDFGVVPGAE--HYACMVDLLSRAGRLDEAMELIR 660

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M  K   P   + V+L+SAC    N++L  +  + L         ++ + + +  NA+C
Sbjct: 661 GMPMK---PTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARC 717



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQT--HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           P NF  P+    +  L+   +L       Q+H+++++   E     VA+ +   +S +  
Sbjct: 490 PDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 549

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +  +  VF+ +   N   W +L+ GY  + R  E   IF  + +   VPD  TF +V+ A
Sbjct: 550 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYA 609

Query: 146 CSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           CSH   V +G      + + +GV         ++DL  +   +  A ++   MP +   +
Sbjct: 610 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 669

Query: 205 -WTAMI 209
            W A++
Sbjct: 670 VWVALL 675


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 308/561 (54%), Gaps = 75/561 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  VF+ I   ++  W T++ GY+Q  RF +   IFV +++++ +P ++T   V+ +
Sbjct: 57  LEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLAS 116

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP------- 198
           C+   S   G  +H+ V++ G+   V V  SL+++Y K  ++  A+ VFD M        
Sbjct: 117 CAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSW 176

Query: 199 ------------------------ERNVVSWTAMIVGYASVGDLVEAKTVFD-------L 227
                                   ER++VSW +MI G    G   EA   F        L
Sbjct: 177 NAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSL 236

Query: 228 MPER---------------------------------SNVSWNALIGGLVKIGDLRSARQ 254
            P+R                                 S    NALI    K G +  AR+
Sbjct: 237 KPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARR 296

Query: 255 LFDE--MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + ++  + + +V+++T +++GY K+GD+T AR +F +  D DVVAW+A+I GY QNG  +
Sbjct: 297 IIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNN 356

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           +A+++F  M S+  +P+ F L +++SA S V +L+    + +   RS   LS + V  AL
Sbjct: 357 DAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS-VGNAL 415

Query: 373 VDMNAKCGNMDRAAELFETM-PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
             M AK G+++ A ++F  +  NRD VS+ SMI  L+ HG G +A+ LF++ML+ G+ PD
Sbjct: 416 TTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPD 475

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + +  VL+AC+H GLVE G  +F+ M+NV+ I P+  HYACMVDL GR G L+ AY+ +
Sbjct: 476 HITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFV 535

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MP+EP   AWG+LL +CK+Y +++L ++ A RL  +EP N+G+Y  L+N+Y++  +W 
Sbjct: 536 ENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWD 595

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D   +R  MK RG++K  G S
Sbjct: 596 DAAKIRKLMKARGVKKEQGLS 616



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 206/471 (43%), Gaps = 110/471 (23%)

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           +++ G+   V++  +L++LY K      A  +F+EMP +   SW  ++ GYA  G L +A
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SYT----------- 268
             VFDL+P R +VSW  +I G  ++G    A ++F +M +  V+   +T           
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 269 --------------------------TMIDGYAKVGDMTSAR------------------ 284
                                     ++++ YAK GD+  A+                  
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 285 -------------SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDE 330
                        + FE   +RD+V+W+++I+G  Q+G  +EA++ FS +    +++PD 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA------------------------ 366
           F L S +SAC+ +  L     +  Y+ R+  D S A                        
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300

Query: 367 ------HVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
                  VIA  AL++   K G++  A ++F ++ + DVV++ +MI G   +G    A+ 
Sbjct: 301 SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIE 360

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDL 477
           +F  M+SEG  P+      +L+A S V  +  G +    A+++  A+ PS  +   +  +
Sbjct: 361 VFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTM 418

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
             + G +  A ++ N +       +W +++ A   +    LGE  A  LFE
Sbjct: 419 YAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHG---LGE-EAIELFE 465



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 204/448 (45%), Gaps = 82/448 (18%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNPNT----------- 101
           +VHS ++K GL   H+ V    SL +  A    L  +  VF+R+   NT           
Sbjct: 128 KVHSFVVKLGL---HACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 102 --------------------FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFP 140
                                 WN+++ G +Q+    E    F  ++++ ++ PD+++  
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE--MP 198
             + AC+++  +  G  IH  ++R   D    VG +LI +Y K   +  AR++ ++  + 
Sbjct: 245 SALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGIS 304

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           + +V+++TA++ GY  +GD+  A+ +F+ + +   V+W A+I G V+ G    A ++F  
Sbjct: 305 DLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKT 364

Query: 259 M----PERNVVSYTTMIDG-----------------------------------YAKVGD 279
           M    P  N  +   M+                                     YAK G 
Sbjct: 365 MVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGS 424

Query: 280 MTSARSLFE-AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           +  AR +F     +RD V+W+++I   AQ+G  +EA+++F  M +  ++PD    V ++S
Sbjct: 425 INGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS 484

Query: 339 ACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-D 396
           AC+  G ++   ++ D   +   +D + +H  A +VD+  + G +  A +  E MP   D
Sbjct: 485 ACTHGGLVEQGRSYFDLMKNVHKIDPTLSHY-ACMVDLFGRAGLLQEAYKFVENMPMEPD 543

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRML 424
           V+++ S++    ++ +   A    +R+L
Sbjct: 544 VIAWGSLLSSCKVYKNVDLAKVAAERLL 571


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 167/411 (40%), Positives = 265/411 (64%), Gaps = 4/411 (0%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+P VIKAC+       G  +H  V + G + D ++ +SLI LY   K++  A+++F+  
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 60

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            +R++VSW AMI GY   G++  A+ VFD M  R  +SWN +I G   +G +  A++LFD
Sbjct: 61  SDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFD 120

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
           EMPERN+VS  +M+ G+ K G++  A  LF   P RDVV+W+++++ YAQ G+P+EA+ +
Sbjct: 121 EMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 180

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M +  V+P E  +VSL+SAC+ +G LD    + +Y++ + ++++   V  ALVDM A
Sbjct: 181 FDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYA 239

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG +  A ++F  M ++DV+++ ++I G++I GH ++A  LF  M   G+ P+++ F  
Sbjct: 240 KCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVA 299

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           +L+ACSH G+V++G +  + M + Y I P  EHY C++DLL R G L+ A EL+ +MP+E
Sbjct: 300 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPME 359

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           P+  A GALLG C+++ + ELGE+V  RL  L+P  +G   L S I  +AD
Sbjct: 360 PNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSGR--LKSAIGXSAD 408



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 175/397 (44%), Gaps = 81/397 (20%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+H+ K G E D  +V+  I L ++    L  +  +FN   + +   WN ++ GY +  
Sbjct: 22  VHTHV-KSGFECDSYIVSSLIHL-YANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRG 79

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
                  +F R++  +                              VI W          
Sbjct: 80  EMGHARMVFDRMVCRD------------------------------VISW---------N 100

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           ++I+ Y    +I  A+++FDEMPERN+VS  +M+ G+   G++ +A  +F  MP R  VS
Sbjct: 101 TMINGYAIVGKIDEAKRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVS 160

Query: 236 WNALIGGLVKIGDLRSARQLFDEMP----------------------------------- 260
           WN+++    + G    A  LFD+M                                    
Sbjct: 161 WNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYIN 220

Query: 261 ----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
               E N +  T ++D YAK G ++ A  +F A   +DV+AW+ +I+G A  G   EA +
Sbjct: 221 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQ 280

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F +M    V+P++   V+++SACS  G +D    +   +S S+    +      ++D+ 
Sbjct: 281 LFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLL 340

Query: 377 AKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
           A+ G ++ A EL  TMP   +  +  +++ G  IHG+
Sbjct: 341 ARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGN 377



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 15/212 (7%)

Query: 33  KPSCLLSALTLIKKCK----LQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           KPS   + ++L+  C     L   LH +H++I    +E + S+V   +   ++    +S 
Sbjct: 190 KPS-EATVVSLLSACAHLGALDKGLH-LHTYINDNRIEVN-SIVGTALVDMYAKCGKISL 246

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +T VFN + + +   WNT++ G +      E   +F  +      P+  TF  ++ ACSH
Sbjct: 247 ATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSH 306

Query: 149 VLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
              V EG  +   +   +G++  V     +IDL  +   +  A ++   MP E N  +  
Sbjct: 307 AGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALG 366

Query: 207 AM-----IVGYASVGDLVEAKTVFDLMPERSN 233
           A+     I G   +G++V  K + +L P +S 
Sbjct: 367 ALLGGCRIHGNFELGEMV-GKRLINLQPCQSG 397


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 196/530 (36%), Positives = 283/530 (53%), Gaps = 40/530 (7%)

Query: 52  HLHQVHSHI-IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           +L ++HS I I   L  + SL    +        P S +  +F+ I   N   +N +++ 
Sbjct: 53  YLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWS-TRHIFDEIPKKNVVFFNVMIRS 111

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           Y  N  + +   +F  +      PD YT+P V+KA S    +  G  IHAAV+R G+D +
Sbjct: 112 YVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN 171

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           VFVG  LI +YGK                                G LVEA  V D MP 
Sbjct: 172 VFVGNGLISMYGK-------------------------------CGCLVEACRVLDQMPC 200

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMIDGYAKVGDMTSAR 284
           R  VSWN+L+ G  + G    A ++  EM      P+   ++          + +++  +
Sbjct: 201 RDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVK 260

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F    ++ +V+W+ +I+ Y  N  P EAV IF  M    V PD   + S++ AC  + 
Sbjct: 261 EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLS 320

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            L L   +  Y+ R  +      +  AL+DM AKCG ++ A E+F+ M  RDVVS+ SMI
Sbjct: 321 ALLLGRRIHEYVVRKRLQ-PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 379

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
               ++G GR AVSLF RM   GL PD +AF  VL+ACSH GL+++G  +F+ M     I
Sbjct: 380 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 439

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
           VP  EH+ CMVDLLGR G +  AY  +  MP+EP+   WGALL AC++YS++ +G L A+
Sbjct: 440 VPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAAD 499

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +LF+L P+ +G YVLLSNIYA A RW DV  VRS MK +G++K+PG S+ 
Sbjct: 500 QLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNF 549


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 315/552 (57%), Gaps = 16/552 (2%)

Query: 33  KPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           +PS +++ L+++  C     L+   +VH+ ++  G   D  +    +S+ +     +  +
Sbjct: 155 EPS-IITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSM-YVKGGSMDDA 212

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             VF+ +   +   +N ++ GY+++  + + F +F R+ +    P+K +F  ++  C   
Sbjct: 213 RQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTP 272

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++  G A+HA  +  G+ +D+ V TSLI +Y     I  AR+VFD M  R+VVSWT MI
Sbjct: 273 EALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMI 332

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP----E 261
            GYA  G++ +A  +F  M E       +++  ++       +L  AR++  ++      
Sbjct: 333 EGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG 392

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            +++  T ++  YAK G +  AR +F+A P RDVV+WSA+I  Y +NG   EA + F  M
Sbjct: 393 TDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLM 452

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL-SRAHVIAALVDMNAKCG 380
              N++PD    ++L++AC  +G LD+   ++ Y      DL S   +  AL+ MNAK G
Sbjct: 453 KRSNIEPDGVTYINLLNACGHLGALDVG--MEIYTQAIKADLVSHVPLGNALIIMNAKHG 510

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +++RA  +F+TM  RDV+++ +MI G S+HG+ R+A+ LFDRML E   P+ V F  VL+
Sbjct: 511 SVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLS 570

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACS  G V++G RFF  +     IVP+ + Y CMVDLLGR G L  A  L+ SMPV+P +
Sbjct: 571 ACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTS 630

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           S W +LL AC+++ ++++ E  A R   ++P +   YV LS++YA A  W +V  VR  M
Sbjct: 631 SIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVM 690

Query: 561 KERGLRKIPGCS 572
           + RG+RK  GC+
Sbjct: 691 ESRGIRKEQGCT 702



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 239/482 (49%), Gaps = 12/482 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QV  HII+ G + +   +   I L +S+   ++ +  +F+ + N     WN L+ GY+Q 
Sbjct: 78  QVRDHIIQGGRQLNIYELNTLIKL-YSICGNVTEARQIFDSVENKTVVTWNALIAGYAQV 136

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F +F +++ E   P   TF  V+ ACS    +  G  +HA V+  G   D  +G
Sbjct: 137 GHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIG 196

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           T+L+ +Y K   +  AR+VFD +  R+V ++  M+ GYA  GD  +A  +F  M +    
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLK 256

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSL 286
            + +S+ +++ G      L   + +  +     +V      T++I  Y   G +  AR +
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV 316

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+    RDVV+W+ +I GYA+NG  ++A  +F+ M  + +QPD    + +M+AC+   NL
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           + +  + S +  +    +   V  ALV M AKCG +  A ++F+ MP RDVVS+ +MI  
Sbjct: 377 NHAREIHSQVDIAGFG-TDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGA 435

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              +G+G +A   F  M    + PD V +  +L AC H+G ++ G   +        +  
Sbjct: 436 YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSH 495

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
            P   A ++ +  + G ++ A  + ++M V      W A++G   L+ +      + +R+
Sbjct: 496 VPLGNALII-MNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRM 553

Query: 527 FE 528
            +
Sbjct: 554 LK 555



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 195/411 (47%), Gaps = 18/411 (4%)

Query: 114 NSRFIEVFT-------IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           ++RF   FT       +  RL       D  T+  + + C+ +     G  +   +I+ G
Sbjct: 28  SARFRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGG 87

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
              +++   +LI LY     ++ AR++FD +  + VV+W A+I GYA VG + EA  +F 
Sbjct: 88  RQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFR 147

Query: 227 LMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVG 278
            M     E S +++ +++        L   +++  ++     VS     T ++  Y K G
Sbjct: 148 QMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGG 207

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            M  AR +F+    RDV  ++ ++ GYA++G  ++A ++F  M    ++P++   +S++ 
Sbjct: 208 SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILD 267

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            C     L     V +    + + +    V  +L+ M   CG+++ A  +F+ M  RDVV
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGL-VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+  MI+G + +G+   A  LF  M  EG+ PD + +  ++ AC+ +    +  R   + 
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA-ISANLNHAREIHSQ 385

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            ++            +V +  + G +K A ++ ++MP     S W A++GA
Sbjct: 386 VDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVS-WSAMIGA 435


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 308/549 (56%), Gaps = 20/549 (3%)

Query: 35   SCLL---SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
            SC+L   + L  + +CK      ++H  + K G    +++V   I+  +  +  +  +  
Sbjct: 557  SCILKCFATLGRVGECK------RIHGCVYKLGFGSYNTVVNSLIAT-YFKSGEVDSAHK 609

Query: 92   VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            +F+ + + +   WN+++ G   N         FV+++      D  T    + AC++V S
Sbjct: 610  LFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGS 669

Query: 152  VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
            +  G A+H   ++     +V    +L+D+Y K   ++ A + F++M ++ VVSWT++I  
Sbjct: 670  LSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAA 729

Query: 212  YASVGDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPERNVV-- 265
            Y   G   +A  +F  M  +       S  +++        L   R + + + + N+   
Sbjct: 730  YVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALC 789

Query: 266  --SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                  ++D YAK G M  A  +F   P +D+V+W+ +I GY++N  P+EA+K+F++M  
Sbjct: 790  LPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-Q 848

Query: 324  KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
            K  +PD   +  L+ AC  +  L++   +   + R+    S  HV  AL+DM  KCG++ 
Sbjct: 849  KESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS-SELHVANALIDMYVKCGSLV 907

Query: 384  RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
             A  LF+ +P +D++++  MI G  +HG G +A++ F +M   G+ PDE+ FT +L ACS
Sbjct: 908  HARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS 967

Query: 444  HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
            H GL+ +GW FF +M +   + P  EHYACMVDLL RTG+L  AY L+ +MP++P A+ W
Sbjct: 968  HSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIW 1027

Query: 504  GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            GALL  C+++ D+EL E VA  +FELEP NAG YVLL+NIYA A++W +V  +R ++ +R
Sbjct: 1028 GALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKR 1087

Query: 564  GLRKIPGCS 572
            GL+K PGCS
Sbjct: 1088 GLKKSPGCS 1096



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 152/529 (28%), Positives = 254/529 (48%), Gaps = 26/529 (4%)

Query: 1   MPKIDEPNTPCKHKSCSSM-----LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQ 55
             K+DE    CK      +     L   S+ + ++    S +L  L    KC  +  +  
Sbjct: 416 FAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQ-LCAEHKCLQEGKM-- 472

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN-TFLWNTLLKGYSQN 114
           VHS I   G+  +  L A  + +  S    L     +F+ I++ N  FLWN ++  Y++ 
Sbjct: 473 VHSVISSNGIPIEGVLGAKLVFMYVSCG-ALREGRRIFDHILSDNKVFLWNLMMSEYAKI 531

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             + E   +F ++ +     + YTF  ++K  + +  V E   IH  V + G      V 
Sbjct: 532 GDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV 591

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSN 233
            SLI  Y K  E+  A K+FDE+ +R+VVSW +MI G    G    A   F  ++  R  
Sbjct: 592 NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG 651

Query: 234 VSWNALIGGL---VKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSL 286
           V    L+  +     +G L   R L  +  +    R V+   T++D Y+K G++  A   
Sbjct: 652 VDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA 711

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE    + VV+W++LI+ Y + G  D+A+++F +M SK V PD + + S++ AC+   +L
Sbjct: 712 FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           D    V +Y+ +++M L    V  AL+DM AKCG+M+ A  +F  +P +D+VS+ +MI G
Sbjct: 772 DKGRDVHNYIRKNNMALCLP-VSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG 830

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA-MQNVYAIV 465
            S +    +A+ LF  M  E   PD +    +L AC  +  +E G       ++N Y+  
Sbjct: 831 YSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS-- 887

Query: 466 PSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            S  H A  ++D+  + G L  A  L + +P E     W  ++  C ++
Sbjct: 888 -SELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMH 934


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 285/521 (54%), Gaps = 41/521 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVL 150
           VF+ + N +   WN+LL GY+ N    E   ++  ++++ +V  ++ TF  ++   S+  
Sbjct: 93  VFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRG 152

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            V  G  IH  + ++G    +FVG+ L+D+Y K   I+ A ++F+E+PE+N+V +  MI 
Sbjct: 153 FVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMIT 212

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP---------- 260
           G      +VEA+ +FD MPE+ ++SW  +I GL + G  + A   F EM           
Sbjct: 213 GLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFT 272

Query: 261 -----------------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
                                        + N+   + ++D Y K  ++  A ++F    
Sbjct: 273 FGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMR 332

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
            ++V++W+A++ GY QNG  +EAV+IF DM    + PD+F L S++S+C+ + +L+    
Sbjct: 333 HKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQ 392

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
                  S + +    V  AL+ +  KCG+++ A +LF  M  RD VS+ +++ G +  G
Sbjct: 393 FHGQALASGL-ICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFG 451

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
              + +SLF+ ML+ G+ PD V F  VL+ACS  GLVE G+ +FE M   + I P P+HY
Sbjct: 452 KANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHY 511

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
            CM+DLL R G L+ A   +N MP  P A  W  LL +C+L  ++E+G+  A  L +LEP
Sbjct: 512 TCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEP 571

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           QN  SY+LLS+IYA   +W DV  +R  M+E G++K PG S
Sbjct: 572 QNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHS 612



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 207/432 (47%), Gaps = 49/432 (11%)

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI 178
           +V  +  R+IR    P+ + +  +I     +  ++    +   + +     ++F   +L+
Sbjct: 23  QVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ----PNLFSWNTLL 78

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN- 237
             Y K   +   ++VFD MP  +VVSW +++ GYA  G + E+  V+++M +  +V+ N 
Sbjct: 79  SAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNR 138

Query: 238 ---------------------------------------ALIGGLVKIGDLRSARQLFDE 258
                                                   L+    K G +  A ++F+E
Sbjct: 139 ITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEE 198

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           +PE+N+V Y TMI G  +   +  A  LF+  P++D ++W+ +I+G  QNG   EAV  F
Sbjct: 199 IPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKF 258

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M  +    D+F   S+++AC     LD    + +Y+ R+        V +AL+DM  K
Sbjct: 259 KEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ-DNIFVGSALLDMYCK 317

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           C N+  A  +F  M +++V+S+ +M+ G   +G+  +AV +F  M    + PD+     V
Sbjct: 318 CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 439 LTACSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           +++C+++  +E+G +F  +A+ +      +  +   ++ L G+ G L+ A++L + M + 
Sbjct: 378 ISSCANLASLEEGAQFHGQALASGLICFVTVSN--ALITLYGKCGSLEHAHQLFHEMKIR 435

Query: 498 PHASAWGALLGA 509
              S W AL+  
Sbjct: 436 DEVS-WTALVSG 446



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 11/266 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H++II+    QD+  V   +   +     + Y+ AVF ++ + N   W  +L GY QN
Sbjct: 291 QIHAYIIRTDY-QDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQN 349

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   IF  + R E  PD +T   VI +C+++ S+ EG   H   +  G+   V V 
Sbjct: 350 GYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVS 409

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-- 232
            +LI LYGK   +  A ++F EM  R+ VSWTA++ GYA  G   E  ++F+ M      
Sbjct: 410 NALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIV 469

Query: 233 --NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARS 285
              V++  ++    + G +      F+ M + + ++     YT MID  ++ G +  A++
Sbjct: 470 PDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKN 529

Query: 286 LFEAAP-DRDVVAWSALISGYAQNGQ 310
                P   D + W+ L+S    NG 
Sbjct: 530 FINQMPFSPDAIGWATLLSSCRLNGN 555


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 182/509 (35%), Positives = 286/509 (56%), Gaps = 35/509 (6%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N+F+WN ++K +S      EVF IF  ++      DK++F LV+KACS +  ++EG  IH
Sbjct: 80  NSFIWNAIIKSFSHKEDPREVFVIFNLMLESGVCVDKFSFSLVLKACSRLGLIKEGMQIH 139

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             + +  +  DVF+   L+ LY +   +   R++FD M +++ VS+ +MI GY   G + 
Sbjct: 140 GLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQLFDRMMKKDSVSFNSMIDGYVKHGMVK 199

Query: 220 EAKTVFDL----------------------------------MPERSNVSWNALIGGLVK 245
            A  +FD+                                  MP++  +SWN++I G VK
Sbjct: 200 SAWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEMPKKDLISWNSMINGCVK 259

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G + +   LF+ MP+R VVS   M++G+AK+G++  AR LF   P+ DV++ +A+++ Y
Sbjct: 260 CGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVISCNAMMARY 319

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            QNG   E++K F DM SK +  D   L+  +SA +Q+G+ D    +  Y+  +   LS 
Sbjct: 320 VQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE 379

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             +  AL+D  AKCG++D A  +FE + N+ +  + +++ GL+IHG G  A  LF  M  
Sbjct: 380 K-LGVALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEVAFELFMEMEK 438

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
             + P+++ F  VL AC+H GLV++G   FE M+ V  + P  +HY CMVD+LG+ GH++
Sbjct: 439 LFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMVDILGQAGHVE 498

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
              + +  M +EP+   W  LL AC+ + +  +GE VA  L  ++  N  SYVLLSNIYA
Sbjct: 499 ETKKFVEKMSIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNLSSYVLLSNIYA 558

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCSSL 574
               W DV  +R  MK+R L+KIPGCS +
Sbjct: 559 GFGIWNDVHRIRMMMKQRDLKKIPGCSQI 587


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/473 (36%), Positives = 281/473 (59%), Gaps = 9/473 (1%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           +T  WN+++ GY +N  F E   +F  +  +  V    ++  +I  C     + E     
Sbjct: 5   DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV----SWNSMIAGCIEDERIDEAWQYF 60

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
            A+ +     +     ++I    +   +  A ++F+EMP RNV+S+TAM+ GYA +G++ 
Sbjct: 61  QAMPQ----RNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIE 116

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           +A+ +F+ MP+++ VSW  +I G V+ G    A  LF++MP++N+V+ T MI GY K G 
Sbjct: 117 QARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGK 176

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
              A+ LF+  P RD+ +W+A+I+GYAQNG  +EA+K+ S M    +QPD   L+S+++A
Sbjct: 177 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 236

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           CS + +L         + +S  + SR  +  AL+ M  KCG++  +   F  + + DVVS
Sbjct: 237 CSSLASLQEGRKTHVLVLKSGYE-SRISICNALITMYCKCGSILDSELAFRQIDHPDVVS 295

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI   + HG   +A++ F  M S  + PD + F  +L+AC H G V +   +F +M 
Sbjct: 296 WNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMI 355

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             Y IVP PEH+AC+VD+L R G ++ AY+++  MP E     WGALL AC ++ +++LG
Sbjct: 356 ESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLG 415

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EL A ++ ELEPQN+G+YV+LSNIYA A  W +V  VR  M+E+G++K P  S
Sbjct: 416 ELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYS 468



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 71/288 (24%)

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV---------------------- 234
           MP R+ VSW ++I GY   G   E+K +F LMP ++ V                      
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 235 ---------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
                    SWNA+I GLV+   +  A +LF+EMP RNV+SYT M+DGYAK+G++  AR+
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LF   P ++VV+W+ +ISGY +NG+ DEA  +F  M  KN+                   
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIV------------------ 162

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
                                  + A++    K G  D+A  LF+ +P RD+ S+ +MI 
Sbjct: 163 ----------------------AMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMIT 200

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
           G + +G G +A+ L  +ML  G+ PD      VLTACS +  +++G +
Sbjct: 201 GYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRK 248



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 53/320 (16%)

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            +  + A+FN +   N   W  ++ GY +N +F E   +F      E +PDK        
Sbjct: 114 EIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLF------EQMPDK-------- 159

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
                                    ++   T++I  Y K  +   A+ +FD++P R++ S
Sbjct: 160 -------------------------NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLAS 194

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQ---- 254
           W AMI GYA  G   EA  +   M      P+ S +   +++     +  L+  R+    
Sbjct: 195 WNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI--SVLTACSSLASLQEGRKTHVL 252

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           +     E  +     +I  Y K G +  +   F      DVV+W+A+I+ +A++G  D A
Sbjct: 253 VLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRA 312

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALV 373
           +  F +M S  V+PD    +SL+SAC   G +  S NW +S +  S+  + R    A LV
Sbjct: 313 LASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIE-SYKIVPRPEHFACLV 371

Query: 374 DMNAKCGNMDRAAELFETMP 393
           D+ ++ G +++A ++ + MP
Sbjct: 372 DILSRGGQVEKAYKIIQEMP 391



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 14/225 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F++I   +   WN ++ GY+QN    E   +  ++++    PD  T   V+ ACS + S
Sbjct: 183 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 242

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           ++EG   H  V++ G +  + +  +LI +Y K   I  +   F ++   +VVSW AMI  
Sbjct: 243 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAA 302

Query: 212 YASVGDLVEAKTVFDLMPERSN------VSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           +A  G    A   F  M  RSN      +++ +L+      G +  +   F+ M E   +
Sbjct: 303 FARHGFYDRALASFGEM--RSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKI 360

Query: 266 -----SYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG 304
                 +  ++D  ++ G +  A  + +  P + D   W AL++ 
Sbjct: 361 VPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAA 405



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 21/214 (9%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT------P 85
           P  S L+S LT            + H  ++K G E         IS+C++L T       
Sbjct: 225 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYES-------RISICNALITMYCKCGS 277

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +  S   F +I +P+   WN ++  ++++  +      F  +      PD  TF  ++ A
Sbjct: 278 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 337

Query: 146 CSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVV 203
           C H   V E      ++I  + +         L+D+  +  ++  A K+  EMP E +  
Sbjct: 338 CGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCG 397

Query: 204 SWTAMIVG-----YASVGDLVEAKTVFDLMPERS 232
            W A++          +G+L  AK + +L P+ S
Sbjct: 398 IWGALLAACHVHLNVKLGELA-AKKIVELEPQNS 430


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 316/560 (56%), Gaps = 28/560 (5%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV--AHFISLC--HSLATPLSYSTAVFN 94
           + L+L+ KCK        H+ I+      +  ++  +  I  C         +Y+  +F 
Sbjct: 6   TILSLLPKCKTLLQFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFR 65

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           +I +PN +++N+++KGY++++       ++ ++++    PD +TFP V+KACS +     
Sbjct: 66  QIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVS 125

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H+ +++ G + +V+V T L+++Y + K +    KVFD++P+ NVV+WT +I GY  
Sbjct: 126 GKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVI 185

Query: 215 VGDLVEAKTVFDLMP----ERSNVSW-NALIGGLVKIGDLRSARQLFDEM---------- 259
                EA  VF  M     E + V+  NALI    +  D+ + R + + +          
Sbjct: 186 NDQPREALEVFKEMGRWGVEANEVTMVNALIA-CARCRDVDTGRWVHERVCKAGYDPFVF 244

Query: 260 -PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
               NV+  T +++ YAK G +  AR LF   P+R++VAW+ +I+ Y Q  + +EA+ +F
Sbjct: 245 ASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLF 304

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMN 376
             M +    PD+   +S++S C++   L L   V +YL +S+M  D++ A    AL+DM 
Sbjct: 305 FYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALA---TALLDMY 361

Query: 377 AKCGNMDRAAELFE-TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVA 434
           AK G +  A ++F  ++  +DVV + SMI  L+IHGHG +A+SLF  M  +  L PD + 
Sbjct: 362 AKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHIT 421

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           +  VL ACSHVGLVE+  + F  M   Y I+P  EHY+CMVDLL R GH + A +L+ +M
Sbjct: 422 YIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETM 481

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
            + P+ + WGALL  C+++ +I +   V  RL ELEP  +G Y LLSNIYA + +W +V 
Sbjct: 482 SIRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEEVN 541

Query: 555 LVRSKMKERGLRKIPGCSSL 574
             R  MK + + K  G SS+
Sbjct: 542 RTRKMMKHKRIAKTIGHSSV 561


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 283/487 (58%), Gaps = 36/487 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV----PDKYTFPL 141
           ++++  VF++I  P+ F++NTL++G +  +   +  +++ R++R        PDK TFP 
Sbjct: 28  IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V++AC+ + +   G  +HA V++ G + D FV  +LI ++                    
Sbjct: 88  VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH-------------------- 127

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
                      AS G+L  A  +FD       V+W+A+I G  + GD+ +AR LFDE P 
Sbjct: 128 -----------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPV 176

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           +++VS+  MI  YAK GDM  AR LF+  P+RDVV+W+ +ISGY + G    A+++F  M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCG 380
                +PD   ++SL+SAC+  G+LD+   + S LS          V+  AL+DM AKCG
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +M  A E+F +M ++DV ++ S++ GL++HGH  +++ +F++ML   + PDE+ F  VL 
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH G+V+ G  FF  MQ+ Y + P+ +HY CMVD+LGR G LK A+E +++M  EP++
Sbjct: 357 ACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNS 416

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W  LL AC+++ +IEL +    +L +     +G YVLLSNIYA+   W     +R  M
Sbjct: 417 VIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLM 476

Query: 561 KERGLRK 567
            + G+ K
Sbjct: 477 DDSGVNK 483



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 163/370 (44%), Gaps = 55/370 (14%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+H++K G E D  +    I + H+    L  + A+F+     +   W+ ++ G ++ 
Sbjct: 103 QVHAHVVKAGCESDAFVKNALIGM-HASCGNLGIAAALFDGRAREDAVAWSAMITGCARR 161

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   +F     E  V D                          ++ W V       
Sbjct: 162 GDIGAARDLF----DECPVKD--------------------------LVSWNV------- 184

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
             +I  Y KR +++ AR++FD++PER+VVSW  MI GY   G  + A  +F+ M      
Sbjct: 185 --MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEK 242

Query: 234 ---VSWNALIGGLVKIGDLRSARQL---FDEMPERN---VVSYTTMIDGYAKVGDMTSAR 284
              V+  +L+      GDL   ++L     +M  RN   VV    +ID YAK G M SA 
Sbjct: 243 PDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAH 302

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F +  D+DV  W++++ G A +G   E++ +F  M    V+PDE   V+++ ACS  G
Sbjct: 303 EVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGG 362

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDVVSYC 401
            +D      + +   +           +VDM  + G +  A E  +TM   PN   V + 
Sbjct: 363 MVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNS--VIWR 420

Query: 402 SMIKGLSIHG 411
           +++    +HG
Sbjct: 421 TLLSACRVHG 430



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 134/309 (43%), Gaps = 44/309 (14%)

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE----------AAPDRDVV 296
           G +  A  +FD++P  +   Y T+I G A       A SL+             PD+  +
Sbjct: 26  GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDK--L 83

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            +  ++      G  D  V++ + +     + D F+  +L+   +  GNL ++  +  + 
Sbjct: 84  TFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL--FD 141

Query: 357 SRSHMDL----------SRAHVIAALVDMNAKC------------------GNMDRAAEL 388
            R+  D           +R   I A  D+  +C                  G+M  A EL
Sbjct: 142 GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALAREL 201

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+ +P RDVVS+  MI G    G    A+ LF++M   G  PD V    +L+AC+  G +
Sbjct: 202 FDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDL 261

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           + G R   ++ ++++    P      ++D+  + G +KSA+E+  SM  +   S W +++
Sbjct: 262 DVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR-DKDVSTWNSIV 320

Query: 508 GACKLYSDI 516
           G   L+  +
Sbjct: 321 GGLALHGHV 329


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 287/517 (55%), Gaps = 65/517 (12%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLLKGYSQNSRFI 118
           ++ + L+ D+ L++ FI  C SL    SY+ ++F  I + P+ +L+N ++K  S +    
Sbjct: 1   MLLRALDTDNLLLSRFIHACSSLGF-YSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHP 59

Query: 119 EVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
           +        I+   + PD Y+FP  +KA +   S++ G  +H+  IR+G+  D+ V    
Sbjct: 60  KASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHV---- 115

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237
                                       TA +  Y+S G                     
Sbjct: 116 ---------------------------LTAFVQMYSSFGS-------------------- 128

Query: 238 ALIGGLVKIGDLRSARQLFD--EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                    G +  AR++FD   M   +V  +  M++GYAK GD+ +AR LFE  P R+V
Sbjct: 129 ---------GCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNV 179

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           ++W+ALI+GYAQ  +P +A+ +F  M  +NV+PDE  ++  ++AC+++G L+L  W+  Y
Sbjct: 180 ISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHY 239

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + R  +  +   +  AL+DM AK G++  A ++FE M ++ ++++ +MI GL++HG G +
Sbjct: 240 IDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTE 299

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ +F RM    + P+++ F  +L+ACSHVGLV+ G  +F  M + Y I P  EHY CM+
Sbjct: 300 ALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMI 359

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR GHLK A  LL  MP EP+A  WG+LL AC  + D ELGEL    L ELEP N+G
Sbjct: 360 DLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSG 419

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +Y LLSNIYA+  RW +  +VR  M + G++K+PG S
Sbjct: 420 NYALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGS 456


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/483 (37%), Positives = 276/483 (57%), Gaps = 19/483 (3%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WNT L+  ++  +F++  +++ +++R    P+ +TFP  +K+C+ +     G+  H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEA 221
           + G   + FV T LI +Y K   +  ARKVF+E     +  V + A++ GY S     +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 222 KTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL--------FDEMPERNVVSYTT 269
             +F  M E     ++V+   LI   V   +L     L        FD     +V     
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDS----DVSVVNC 183

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
            I  Y K G +  A+ LF+  P + +++W+A++SGYAQNG     ++++ +M    V PD
Sbjct: 184 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPD 243

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              LV ++S+C+ +G   + + V+  +  S    S   +  AL++M A+CGN+ +A  +F
Sbjct: 244 PVTLVGVLSSCANLGAQSVGHEVEFKMQASGFT-SNPFLNNALINMYARCGNLTKAQAVF 302

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + MP R +VS+ ++I G  +HGHG  AV LF  M+  G+ PD  AF  VL+ACSH GL +
Sbjct: 303 DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTD 362

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G  +F+ M+  Y + P PEHY+CMVDLLGR G LK A  L+ SMP++P  + WGALLGA
Sbjct: 363 QGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 422

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CK++ ++EL EL   R+ ELEP+N G YVLLSNIY+ A+    V  +R  MKE+ L+K P
Sbjct: 423 CKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDP 482

Query: 570 GCS 572
           GCS
Sbjct: 483 GCS 485



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 181/350 (51%), Gaps = 13/350 (3%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIH 159
           T  +N L+ GY  NS+  +   +F R + EE VP +  T   +I AC   +++  G+++H
Sbjct: 108 TVCYNALVSGYVSNSKCSDAVLLF-RQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLH 166

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG--- 216
            + +++G D DV V    I +Y K   ++ A+K+FDEMP + ++SW AM+ GYA  G   
Sbjct: 167 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLAT 226

Query: 217 DLVEAKTVFDLMPERSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMI 271
           +++E     D+     + V+   ++     +G      ++  +M      S       +I
Sbjct: 227 NVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALI 286

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           + YA+ G++T A+++F+  P+R +V+W+A+I GY  +G  + AV++F +M    ++PD  
Sbjct: 287 NMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 346

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
             V ++SACS  G  D        + R++         + +VD+  + G +  A  L E+
Sbjct: 347 AFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIES 406

Query: 392 MPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           MP + D   + +++    IH +   A   F+R++   L P+ + + ++L+
Sbjct: 407 MPIKPDGAVWGALLGACKIHKNVELAELAFERVIE--LEPENIGYYVLLS 454


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 295/530 (55%), Gaps = 39/530 (7%)

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
           S AT    +  +F+ +  P   L +T L   S+ S   ++   F  + R+ A       P
Sbjct: 64  SDATTSRAARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVP 123

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
           LV K+C+   S  +G  +H   +  G+  DVFV T+L+D Y K  ++  A  VFDEMP +
Sbjct: 124 LVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVK 183

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           + +    +I GY+  GD+ +A+ +FD M  R++ SWN++I      G+ R A  LFD M 
Sbjct: 184 DPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRML 243

Query: 261 E--------------------------------------RNVVSYTTMIDGYAKVGDMTS 282
                                                  +NV+ +T +++ Y K   +  
Sbjct: 244 SEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDD 303

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR  F+    RDVVAWS +I+GYAQNG+P E++++F  M + + +P+E  LV ++SAC+Q
Sbjct: 304 ARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQ 363

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G+ +L   + +Y     + L+ +++ +AL+DM  +CG++ RA  +F  M  + V+++ S
Sbjct: 364 LGSDELVEQIGNYAENQRLPLT-SYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNS 422

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI+GL+++G    A+SL+++M   G+ P+E+ F  +L AC+H GLV+ G  FFE M+  +
Sbjct: 423 MIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREH 482

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            + P  EH AC+VDLL ++G L  AY+ +  M VEP+A  W  LL +C+ ++D+EL +L 
Sbjct: 483 LVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLA 542

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +L  +EP N+  YVLLSNIYA A  W D   +R  M+ + ++K+   S
Sbjct: 543 SRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYS 592



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 181/374 (48%), Gaps = 20/374 (5%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +S A  +  +  +F+ +    +  WN+++  Y+    F E  T+F R++ E A P+  T 
Sbjct: 195 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITI 254

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVD--EDVFVGTSLIDLYGKRKEISCARKVFDEM 197
             V   C+    +  G  +   +   G D  ++V V T+L+++Y K + I  AR+ FD M
Sbjct: 255 TSVFSICAKSGDLDTGKRVRDLI---GEDDLQNVIVHTALMEMYVKCRAIDDARREFDRM 311

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSAR 253
            +R+VV+W+ MI GYA  G  +E+  +F+ M     R N V+   +I    ++G      
Sbjct: 312 SQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVE 371

Query: 254 QL--FDEMPERNVVSY--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           Q+  + E     + SY  + +ID Y + G +  ARS+F     + V+ W+++I G A NG
Sbjct: 372 QIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNG 431

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             ++A+ ++  M    VQP+E   V+L++AC+  G +D        + R H+   +    
Sbjct: 432 FAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHC 491

Query: 370 AALVDMNAKCGNMDRAAEL---FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
           A +VD+  K G +  A +     E  PN   V + +++     H     A     ++L+ 
Sbjct: 492 ACIVDLLCKSGGLWEAYKFICDMEVEPN--AVIWTTLLSSCRAHADVELAKLASRKLLA- 548

Query: 427 GLTPDEVAFTIVLT 440
            + PD  +  ++L+
Sbjct: 549 -MEPDNSSIYVLLS 561


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 304/533 (57%), Gaps = 21/533 (3%)

Query: 54  HQVHSHIIKKGLEQ----DHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
            Q+H  I+K G  +     +SLVA ++         +  +  VF+ +   +   WN+++ 
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLK-----NQRVDSARKVFDEMTERDVISWNSIIN 118

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD- 168
           GY  N    +  ++FV+++      D  T   V   C+    +  G A+H+  ++     
Sbjct: 119 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 178

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
           ED F  T L+D+Y K  ++  A+ VF EM +R+VVS+T+MI GYA  G   EA  +F+ M
Sbjct: 179 EDRFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 237

Query: 229 PERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERN----VVSYTTMIDGYAKVGDM 280
            E        +  A++    +   L   +++ + + E +    +     ++D YAK G M
Sbjct: 238 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSA 339
             A  +F     +D+++W+ +I GY++N   +EA+ +F+ +   K   PDE  +  ++ A
Sbjct: 298 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 357

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +   D    +  Y+ R+    S  HV  +LVDM AKCG +  A  LF+ + ++D+VS
Sbjct: 358 CASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 416

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           +  MI G  +HG G++A++LF++M   G+  DE++F  +L ACSH GLV++GWRFF  M+
Sbjct: 417 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 476

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           +   I P+ EHYAC+VD+L RTG L  AY  + +MP+ P A+ WGALL  C+++ D++L 
Sbjct: 477 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 536

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E VA ++FELEP+N G YVL++NIYA A++W  V  +R ++ +RGLRK PGCS
Sbjct: 537 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 589


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 275/475 (57%), Gaps = 47/475 (9%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEI---SCARKVFDEMP 198
           +++ CS   S+ +   +HA +    + +  +V T L+ L      +   S  R +F ++ 
Sbjct: 14  ILERCS---SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--SNVSW-------------------- 236
             N  +WTA+I  YA  G L +A + +  M +R  S +S+                    
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 237 ------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                             NA+I   VK G LR AR +FDEMPER+V+S+T +I  Y ++G
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           DM +AR LF+  P +D+V W+A+++GYAQN  P +A+++F  +  + V+ DE  LV ++S
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVIS 250

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           AC+Q+G    +NW+      S   +     V +AL+DM +KCGN++ A ++F+ M  R+V
Sbjct: 251 ACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNV 310

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
            SY SMI G +IHG  R A+ LF  ML  G+ P+ V F  VLTACSH GLV+ G + F +
Sbjct: 311 FSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFAS 370

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M+  Y + P+ E YACM DLL R G+L+ A +L+ +MP+E   + WGALLGA  ++ + +
Sbjct: 371 MEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPD 430

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + E+ + RLFELEP N G+Y+LLSN YA+A RW DV  VR  ++E+ L+K PG S
Sbjct: 431 VAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWS 485



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 218/443 (49%), Gaps = 47/443 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA-TPL-SYSTAVFNRIVNPN 100
           ++++C       +VH+ I  K L+Q   ++   + L  +L   PL SY   +F+++  PN
Sbjct: 14  ILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPN 73

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F W  L++ Y+      +  + +  + +    P  +TF  +  AC+ V     G  +HA
Sbjct: 74  PFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHA 133

Query: 161 -AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             ++  G   D++V  ++ID+Y K   + CAR VFDEMPER+V+SWT +IV Y  +GD+ 
Sbjct: 134 QTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMR 193

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVK----IGDLRSARQLFDEMPE-------------- 261
            A+ +FD +P +  V+W A++ G  +    +  L   R+L DE  E              
Sbjct: 194 AARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACA 253

Query: 262 -----------------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                                   NV+  + +ID Y+K G++  A  +F+   +R+V ++
Sbjct: 254 QLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSY 313

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           S++I G+A +G+   A+K+F DM    V+P+    V +++ACS  G +D    + + + +
Sbjct: 314 SSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEK 373

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAV 417
            +     A + A + D+ ++ G +++A +L ETMP   D   + +++    +HG+   A 
Sbjct: 374 CYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAE 433

Query: 418 SLFDRMLSEGLTPDEVAFTIVLT 440
               R+    L PD +   ++L+
Sbjct: 434 IASKRLFE--LEPDNIGNYLLLS 454


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 196/622 (31%), Positives = 322/622 (51%), Gaps = 91/622 (14%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S +L A +++K  ++     QVH  ++  G E D   VA+ + + ++       S  +F+
Sbjct: 161 SSVLKACSIVKDLRIGK---QVHGVVVVSGFEGD-VFVANTLVVMYAKCDEFLDSKRLFD 216

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            I   N   WN L   Y Q     E   +F  ++     P++++   ++ AC+ +     
Sbjct: 217 EIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR 276

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG--- 211
           G  IH  +I+ G D D F   +L+D+Y K  +++ A  VF+++ + ++VSW A+I G   
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 212 -------------------------------YASVG--------DLVE-AKTVFDLMPER 231
                                          + SVG        DL+E A+  F+L+PE+
Sbjct: 337 HEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 396

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPER----------------------------- 262
             ++WNA+I G  +  +   A  LF EM +                              
Sbjct: 397 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVH 456

Query: 263 ----------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                     ++    ++ID Y K   +  A  +FE     D+V+++++I+ YAQ GQ +
Sbjct: 457 GLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE 516

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-- 370
           EA+K+F +M    ++PD F+  SL++AC+ +   +    +  ++ +    L    + A  
Sbjct: 517 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLD---IFAGN 573

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +LV+M AKCG++D A   F  +  R +VS+ +MI GL+ HGHGRQA+ LF++ML EG++P
Sbjct: 574 SLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSP 633

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           + +    VL AC+H GLV +   +FE+M+ ++   P  EHYACM+DLLGR G +  A EL
Sbjct: 634 NHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVEL 693

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +N MP E +AS WGALLGA +++ D+ELG   A  LF LEP+ +G++VLL+NIYA+A +W
Sbjct: 694 VNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKW 753

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
            +V  VR  M++  ++K PG S
Sbjct: 754 ENVAEVRRLMRDSKVKKEPGMS 775



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 151/597 (25%), Positives = 259/597 (43%), Gaps = 124/597 (20%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+HI K GL  D S+  H I+L +S      Y+  + +    P+   W+ L+ GY+QN
Sbjct: 77  QIHAHITKSGLSDDPSIRNHLINL-YSKCRXFGYARKLVDESSEPDLVSWSALISGYAQN 135

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                    F  +       +++TF  V+KACS V  +R G  +H  V+  G + DVFV 
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
            +L+ +Y K  E   ++++FDE+PERNVVSW A+   Y       EA  +F  M      
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIK 255

Query: 229 PERSNVS----------------------------W-----NALIGGLVKIGDLRSARQL 255
           P   ++S                            W     NAL+    K+GDL  A  +
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 256 FDEMPERNVVSYTTMIDG------------------------------------------ 273
           F+++ + ++VS+  +I G                                          
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVD 375

Query: 274 -YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y+K   +  AR  F   P++D++AW+A+ISGY+Q  +  EA+ +F +M  + +  ++  
Sbjct: 376 MYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTT 435

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRS--HMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
           L +++ + + +  + +   V     +S  H D+   +V+ +L+D   KC +++ A  +FE
Sbjct: 436 LSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI---YVVNSLIDSYGKCSHVEDAERIFE 492

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
                D+VS+ SMI   + +G G +A+ LF  M    L PD    + +L AC+++   E 
Sbjct: 493 ECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQ 552

Query: 451 GWRFF---------------EAMQNVYAIVPSPEH---------------YACMVDLLGR 480
           G +                  ++ N+YA   S +                ++ M+  L +
Sbjct: 553 GKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQ 612

Query: 481 TGHLKSAYELLNSM---PVEPHASAWGALLGACK---LYSDIELGELVANRLFELEP 531
            GH + A +L N M    V P+     ++LGAC    L ++ +L       LF  +P
Sbjct: 613 HGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 669



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 9/298 (3%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           P   ++  ++  C    S+R G  IHA + + G+ +D  +   LI+LY K +    ARK+
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDL 249
            DE  E ++VSW+A+I GYA  G    A   F  M     + +  ++++++     + DL
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 250 RSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
           R  +Q+   +     E +V    T++  YAK  +   ++ LF+  P+R+VV+W+AL S Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            Q     EAV +F +M    ++P+EF L S+++AC+ + +      +  YL +   D   
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD- 292

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
                ALVDM AK G++  A  +FE +   D+VS+ ++I G  +H H  QA+ L  +M
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 297/487 (60%), Gaps = 8/487 (1%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNS----RFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           +VF ++   +   W TL+ G+S+N     + +E+F + +R    E  P+++TF  V++AC
Sbjct: 185 SVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMR--SGETTPNEFTFDCVVRAC 242

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
             +  +  G  +H  +++ G++ D  +G +L++ Y + + I  A +V   +    + +  
Sbjct: 243 GRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALN 302

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           ++I G  S+G + +A+ VF+ M E + VS+N +I G    G +  +++LF++MP R + S
Sbjct: 303 SLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFS 362

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             TMI  Y++ G++  A  LFE    ++D V W+++ISGY  +GQP+EA+K++  M   +
Sbjct: 363 SNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLS 422

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           +Q  +    +L  ACS +G+L     + ++L ++  + S  +V  +L+DM +KCG++  A
Sbjct: 423 IQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFE-SNVYVGTSLIDMYSKCGSIMEA 481

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
              F ++ + +V ++ ++I G + HG G +A+SLFDRM+ +GL P+   F  VL+ACS  
Sbjct: 482 QTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRA 541

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV +G + F +M+  Y++ P+ EHYAC+VDLLGR+GH++ A E +  MP+E     WGA
Sbjct: 542 GLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGA 601

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LL AC  + D+E+GE VA ++F  +P+   SYV+LSNIYA   RW +  +VR  ++   +
Sbjct: 602 LLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKV 661

Query: 566 RKIPGCS 572
           +K PGCS
Sbjct: 662 KKDPGCS 668



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 206/471 (43%), Gaps = 59/471 (12%)

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
           + L  +  +F+++       WNT++  YS++ RF E   +   + R      + TF  V+
Sbjct: 46  SKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVL 105

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
             C+ +  +R+G  IH  V++ G +    VG++L+  Y    EI  AR+VFD +  RN V
Sbjct: 106 SVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEV 165

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD-LRSARQLFDEMPER 262
            W+ M+VGY +   + +A +VF  MP R  V+W  LI G  K GD    A ++F  M   
Sbjct: 166 LWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRS 225

Query: 263 -----NVVSYTTMIDGYAKVGDMTSARS----LFEAAPDRDVVAWSALISGYAQNGQPDE 313
                N  ++  ++    ++G ++  R+    L +   + D     AL+  Y +    D+
Sbjct: 226 GETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDD 285

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV----------------DSYLS 357
           A+++    C   V P    L SL+     +G ++ +  V                  Y  
Sbjct: 286 ALRV----CKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAV 341

Query: 358 RSHMDLSR-------AHVIAA---LVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKG 406
              MD S+          I +   ++ + ++ G +D+A ELFE   N +D V++ SMI G
Sbjct: 342 GGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISG 401

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF--------FEAM 458
               G   +A+ L+  M    +   +  F+ +  ACS +G +  G           FE+ 
Sbjct: 402 YIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFES- 460

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            NVY           ++D+  + G +  A     S+   P+ +AW AL+  
Sbjct: 461 -NVYVGTS-------LIDMYSKCGSIMEAQTSFVSI-FSPNVAAWTALING 502



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 51/373 (13%)

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA---------------- 221
           I  Y K+ ++  AR++FD+MP+R VVSW  MI  Y+  G   EA                
Sbjct: 39  ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSE 98

Query: 222 -------------------KTVFDLMPERSNVSW----NALIGGLVKIGDLRSARQLFDE 258
                              K +  L+ +  + S+    +AL+       ++  AR++FD 
Sbjct: 99  STFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDV 158

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP-DEAVKI 317
           +  RN V ++ M+ GY     M  A S+F   P RDVVAW+ LISG+++NG    +A++I
Sbjct: 159 LVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEI 218

Query: 318 FSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           F  M  S    P+EF    ++ AC ++G L +   V   L +  ++   + +  ALV+  
Sbjct: 219 FRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPS-IGGALVEFY 277

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
            +C  +D A  + + + N  + +  S+I+GL   G    A  +F+ M    + P  V++ 
Sbjct: 278 CECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE--MNP--VSYN 333

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
           +++   +  G ++D  R FE M     I  S      M+ +  R G +  A EL      
Sbjct: 334 LMIKGYAVGGQMDDSKRLFEKMP-CRTIFSSNT----MISVYSRNGEIDKALELFEETKN 388

Query: 497 EPHASAWGALLGA 509
           E     W +++  
Sbjct: 389 EKDPVTWNSMISG 401



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 144/334 (43%), Gaps = 37/334 (11%)

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           ++S    I  YAK   +  AR LF+  P R VV+W+ +IS Y+++G+  EA+ +   M  
Sbjct: 32  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 91

Query: 324 KNVQPDEFILVSLMSACSQV-----GNL-------------DLSNWVDSYLSRSHMDLSR 365
            +++  E    S++S C+++     G L             +L      Y   S  ++  
Sbjct: 92  SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 151

Query: 366 A-HVIAALVDMN-----------AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           A  V   LV  N             C  MD A  +F  MP RDVV++ ++I G S +G G
Sbjct: 152 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 211

Query: 414 -RQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
             +A+ +F  M+  G  TP+E  F  V+ AC  +G++  G R    +     +   P   
Sbjct: 212 CGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVG-RTVHGLLMKCGLEYDPSIG 270

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
             +V+       +  A  +   + V P  +A  +L+        IE  ELV N + E+ P
Sbjct: 271 GALVEFYCECEAIDDALRVCKGV-VNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNP 329

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
               SY L+   YA   +  D   +  KM  R +
Sbjct: 330 V---SYNLMIKGYAVGGQMDDSKRLFEKMPCRTI 360



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 42/267 (15%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN------------------------- 114
           +++   +  S  +F ++     F  NT++  YS+N                         
Sbjct: 339 YAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSM 398

Query: 115 -SRFI------EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
            S +I      E   +++ + R      + TF  +  ACS + S+ +G  +HA +I+   
Sbjct: 399 ISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPF 458

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + +V+VGTSLID+Y K   I  A+  F  +   NV +WTA+I G+A  G   EA ++FD 
Sbjct: 459 ESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDR 518

Query: 228 MPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVG 278
           M E+    +  ++  ++    + G +    ++F  M     V+     Y  ++D   + G
Sbjct: 519 MIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSG 578

Query: 279 DMTSARSLFEAAP-DRDVVAWSALISG 304
            +  A    +  P + D V W AL+S 
Sbjct: 579 HIREAEEFIKKMPLEADGVVWGALLSA 605


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 271/483 (56%), Gaps = 42/483 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           VF+ +   NT  WN+LL G S++ SR +E   +F      + +P+  TF   I       
Sbjct: 83  VFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF------DEIPEPDTFSYNI------- 129

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
                                     ++  Y +      A+  FD MP ++  SW  MI 
Sbjct: 130 --------------------------MLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMIT 163

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           GYA  G++ +A+ +F  M E++ VSWNA+I G ++ GDL  A   F   P R VV++T M
Sbjct: 164 GYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAM 223

Query: 271 IDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           I GY K   +  A ++F +   ++++V W+A+ISGY +N +P++ +K+F  M  + ++P+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              L S +  CS++  L L   +   +S+S +  +    + +L+ M  KCG +  A +LF
Sbjct: 284 SSGLSSALLGCSELSALQLGRQIHQIVSKSTL-CNDVTALTSLISMYCKCGELGDAWKLF 342

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E M  +DVV++ +MI G + HG+  +A+ LF  M+   + PD + F  VL AC+H GLV 
Sbjct: 343 EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G  +FE+M   Y + P P+HY CMVDLLGR G L+ A +L+ SMP  PHA+ +G LLGA
Sbjct: 403 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGA 462

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+++ ++EL E  A +L +L  QNA  YV L+NIYA+ +RW DV  VR +MKE  + K+P
Sbjct: 463 CRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVP 522

Query: 570 GCS 572
           G S
Sbjct: 523 GYS 525



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 156/331 (47%), Gaps = 27/331 (8%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP---- 134
           C+        + + F+R+   +   WNT++ GY++     +   +F  ++ +  V     
Sbjct: 133 CYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAM 192

Query: 135 -DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
              Y     ++  SH   V    A    V+ W         T++I  Y K K++  A  +
Sbjct: 193 ISGYIECGDLEKASHFFKV----APVRGVVAW---------TAMITGYMKAKKVELAEAM 239

Query: 194 FDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSNVS-WNALIGGLVKIGD 248
           F +M   +N+V+W AMI GY       +   +F  M E   R N S  ++ + G  ++  
Sbjct: 240 FKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSA 299

Query: 249 LRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           L+  RQ+   + +     +V + T++I  Y K G++  A  LFE    +DVVAW+A+ISG
Sbjct: 300 LQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 359

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           YAQ+G  D+A+ +F +M    ++PD    V+++ AC+  G +++       + R +    
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           +      +VD+  + G ++ A +L  +MP R
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 155/345 (44%), Gaps = 45/345 (13%)

Query: 168 DED-VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS-VGDLVEAKTVF 225
           D+D +F    +I    +  +I  A +VF  M  +N ++W ++++G +     ++EA  +F
Sbjct: 57  DQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           D +PE    S+N ++   V+  +   A+  FD MP ++  S+ TMI GYA+ G+M  AR 
Sbjct: 117 DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           LF +  +++ V+W+A+ISGY + G  ++A   F       V P   ++            
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFK------VAPVRGVVA----------- 219

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMI 404
                W                   A++    K   ++ A  +F+ M  N+++V++ +MI
Sbjct: 220 -----WT------------------AMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMI 256

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G   +      + LF  ML EG+ P+    +  L  CS +  ++ G R    + +   +
Sbjct: 257 SGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLG-RQIHQIVSKSTL 315

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                    ++ +  + G L  A++L   M  +    AW A++  
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISG 359



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 26/257 (10%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  S L SAL    +        Q+H  + K  L  D + +   IS+ +     L  +  
Sbjct: 282 PNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISM-YCKCGELGDAWK 340

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  +   +   WN ++ GY+Q+    +   +F  +I  +  PD  TF  V+ AC+H   
Sbjct: 341 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V  G A   +++R + V+      T ++DL G+  ++  A K+   MP R   +    ++
Sbjct: 401 VNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLL 460

Query: 211 GYASVGDLVE-----AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE------- 258
           G   V   VE     A+ +  L  + +         G V++ ++ +++  +++       
Sbjct: 461 GACRVHKNVELAEFAAEKLLQLNSQNA--------AGYVQLANIYASKNRWEDVARVRKR 512

Query: 259 MPERNVVSYTTMIDGYA 275
           M E NVV     + GY+
Sbjct: 513 MKESNVVK----VPGYS 525


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 294/504 (58%), Gaps = 24/504 (4%)

Query: 91  AVFNRIVNPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
           ++F + V+  + + WN+++  ++++   ++    F  + +    P++ TFP  IK+CS +
Sbjct: 40  SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +  G  IH     +G   D+FV ++LID+Y K   ++ ARK+FDE+PERNVVSWT+MI
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 210 VGYASVGDLVEA-----------KTVFDLMPERSNVSWNALIGGLVKIGD---LRSARQL 255
            GY       EA           +T +D +        + L+G ++       ++S  + 
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 256 FDEMP-----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
              +      E  +    T++D YAK G+++ +R +F+   + DV +W++LI+ YAQNG 
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279

Query: 311 PDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             EA  +FSDM  +  V+ +   L +++ AC+  G L +   +   + +  M+L    V+
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVK--MELEDNLVV 337

Query: 370 A-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             ++VDM  KCG ++ A + F+ +  ++V S+  M+ G  +HGHG++A+ +F  M+  G+
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P+ + F  VL ACSH GL+++GW +F  M+  + + P  EHY+CMVDLLGR G+LK AY
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
            L+  M V+P    WG+LLGAC+++ ++ELGE+ A +LF+L+P N G YVLLSNIYA A 
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAG 517

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW DV  +R  MK  GL K PG S
Sbjct: 518 RWDDVERMRILMKNHGLLKTPGYS 541



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 189/423 (44%), Gaps = 52/423 (12%)

Query: 10  PCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDH 69
           PC  KSCSS+   C+                              Q+H      G   D 
Sbjct: 90  PCTIKSCSSLYDLCAGK----------------------------QIHQQAFVFGYGSDI 121

Query: 70  SLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
            + +  I + +S    L+ +  +F+ I   N   W +++ GY QN R  E   +F   + 
Sbjct: 122 FVASALIDM-YSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLL 180

Query: 130 EEAVP-----------DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI 178
            +              D      VI AC+ V        +H   ++ G +  + VG +L+
Sbjct: 181 VDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLM 240

Query: 179 DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA 238
           D Y K  EIS +RKVFD M E +V SW ++I  YA  G  VEA ++F  M +R  V +NA
Sbjct: 241 DAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNA 300

Query: 239 LIGGLVKI-----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           +    V +     G L+  + + D++     E N+V  T+++D Y K G +  AR  F+ 
Sbjct: 301 VTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDR 360

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
              ++V +W+ +++GY  +G   EA+K+F +M    ++P+    VS+++ACS  G L   
Sbjct: 361 LKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEG 420

Query: 350 -NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGL 407
            +W +       ++    H  + +VD+  + G +  A  L + M  + D + + S++   
Sbjct: 421 WHWFNKMKCEFDVEPGIEHY-SCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGAC 479

Query: 408 SIH 410
            IH
Sbjct: 480 RIH 482


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/513 (37%), Positives = 286/513 (55%), Gaps = 42/513 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   NT  WN L+ GY  N    E   +F R+     V    ++  +++       
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV----SWTAMVRG-----Y 201

Query: 152 VREGTAIHAAVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V+EG    A  + W + E +V   T ++    +   I  A ++FD MPE++VV+ T MI 
Sbjct: 202 VKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIG 261

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           GY  VG LVEA+ +FD MP R+ VSW  +I G V+   +  AR+LF+ MPE+N VS+T M
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAM 321

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN----- 325
           + GY   G +  A  LF A P + VVA +A+I  + QNG+  +A ++F  M  K+     
Sbjct: 322 LKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 326 --------------------------VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
                                     ++P+   L+S++S C+ + NLD    + + L RS
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             DL   +V + L+ M  KCGN+ +A ++F+    +DVV + S+I G + HG G +A+ +
Sbjct: 442 QFDLD-VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRV 500

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F  M   G+ PD+V F  VL+ACS+ G V+ G   F +M+  Y +    EHYACMVDLLG
Sbjct: 501 FHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLG 560

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G L  A +L+  MP+E  A  WGALLGAC+ +  ++L E+ A +L  LEP+NAG ++L
Sbjct: 561 RAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFIL 620

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LSNIYA+  RW DV  +R  M++R + K PGCS
Sbjct: 621 LSNIYASQGRWDDVAELRRNMRDRRVSKYPGCS 653



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 188/378 (49%), Gaps = 60/378 (15%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +S    +  +  VF+ + + N   WN+++ GY QN R  E   +F          DK + 
Sbjct: 108 YSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF----------DKMS- 156

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
                                  I W           L+  Y     I+ AR+VFD MPE
Sbjct: 157 -------------------ERNTISW---------NGLVSGYINNGMINEAREVFDRMPE 188

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           RNVVSWTAM+ GY   G + EA+T+F  MPE++ VSW  ++GGL++ G +  A +LFD M
Sbjct: 189 RNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM 248

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PE++VV+ T MI GY +VG +  AR LF+  P R+VV+W+ +I+GY QN Q D A K+F 
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE 308

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA-- 377
            M  KN    E    +++   +  G LD ++           +L  A  I ++V  NA  
Sbjct: 309 VMPEKN----EVSWTAMLKGYTNCGRLDEAS-----------ELFNAMPIKSVVACNAMI 353

Query: 378 ----KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
               + G + +A ++F+ M  +D  ++ +MIK     G    A+ LF  M  EG+ P+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 434 AFTIVLTACSHVGLVEDG 451
           +   VL+ C+ +  ++ G
Sbjct: 414 SLISVLSVCAGLANLDHG 431



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 34/311 (10%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SLI  Y +  +I  AR VFDEM ++N++SW +++ GY       EA+ +FD M ER+ +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN L+ G +  G +  AR++FD MPERNVVS+T M+ GY K G ++ A +LF   P+++
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL-------- 346
           VV+W+ ++ G  Q G+ DEA ++F  M  K+V        +++    QVG L        
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFD 277

Query: 347 -----DLSNW---VDSYLSRSHMDLSRA--HVI--------AALVDMNAKCGNMDRAAEL 388
                ++ +W   +  Y+    +D++R    V+         A++     CG +D A+EL
Sbjct: 278 EMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASEL 337

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  MP + VV+  +MI     +G   +A  +FD+M  +    DE  ++ ++      GL 
Sbjct: 338 FNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK----DEGTWSAMIKVYERKGLE 393

Query: 449 EDGWRFFEAMQ 459
            D    F  MQ
Sbjct: 394 LDALELFRMMQ 404



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 169/330 (51%), Gaps = 27/330 (8%)

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           ++S  ++I  Y+ +G + +A+ VFD M +++ +SWN+++ G  +    + A+ +FD+M E
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           RN +S+  ++ GY   G +  AR +F+  P+R+VV+W+A++ GY + G   EA  +F  M
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             KNV     +L  L+    Q G +D +  +   +    + ++R ++I        + G 
Sbjct: 218 PEKNVVSWTVMLGGLL----QEGRIDEACRLFDMMPEKDV-VTRTNMIGGY----CQVGR 268

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  LF+ MP R+VVS+ +MI G   +     A  LF+ M  +    +EV++T +L  
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKG 324

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPH 499
            ++ G +++    F AM       P     AC  M+   G+ G +  A ++ + M  E  
Sbjct: 325 YTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKD 376

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFEL 529
              W A++   K+Y    L EL A  LF +
Sbjct: 377 EGTWSAMI---KVYERKGL-ELDALELFRM 402



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 19/277 (6%)

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           LC      +  +  VF+++   +   W+ ++K Y +    ++   +F  + RE   P+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           +   V+  C+ + ++  G  IHA ++R   D DV+V + L+ +Y K   ++ A++VFD  
Sbjct: 414 SLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRS 251
             ++VV W ++I GYA  G  VEA  VF       +MP+  +V++  ++      G+++ 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD--DVTFVGVLSACSYTGNVKK 531

Query: 252 ARQLFDEMP-----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGY 305
             ++F+ M      E+ +  Y  M+D   + G +  A  L E  P + D + W AL+   
Sbjct: 532 GLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGAC 591

Query: 306 AQNGQPD---EAVKIFSDMCSKNVQPDEFILVSLMSA 339
             + + D    A K    +  KN  P  FIL+S + A
Sbjct: 592 RTHMKLDLAEVAAKKLLVLEPKNAGP--FILLSNIYA 626


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/544 (36%), Positives = 302/544 (55%), Gaps = 16/544 (2%)

Query: 43  LIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+K C  +  L     VH+ +  +GL  +        ++      P   +  VF+R+ + 
Sbjct: 22  LLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPAD-ARRVFDRMPSR 80

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA--VPDKYTFPLVIKACSHVLSVREGTA 157
           +   WN ++ GY++N          VR+  EE    PD  T   V+ AC+   ++     
Sbjct: 81  DRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACRE 140

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA  +R G+DE V V T+++D Y K   +  AR VFD MP RN VSW AMI GYA  G+
Sbjct: 141 VHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGN 200

Query: 218 LVEAKTVF-DLMPERSNVSWNALIGGLVKIGDL------RSARQLFDEMPERNVVSYTT- 269
             EA  +F  ++ E  +V+  +++  L   G+L      R   +L   +   + VS T  
Sbjct: 201 ATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNA 260

Query: 270 MIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           +I  YAK      A  +F E    +  ++W+A+I G+ QN  P++A ++F+ M  +NV+P
Sbjct: 261 LITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRP 320

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D F LVS++ A + + +   + W+  Y  R  +D    +V+ AL+DM +KCG +  A  L
Sbjct: 321 DSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD-QDVYVLTALIDMYSKCGRVSIARRL 379

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F++  +R V+++ +MI G   HG G+ AV LF+ M   G  P+E  F  VL ACSH GLV
Sbjct: 380 FDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLV 439

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++G ++F +M+  Y + P  EHY  MVDLLGR G L  A+  + +MP+EP  S +GA+LG
Sbjct: 440 DEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLG 499

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           ACKL+ ++EL E  A  +FEL P+    +VLL+NIYA A  W DV  VR+ M+++GL+K 
Sbjct: 500 ACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKT 559

Query: 569 PGCS 572
           PG S
Sbjct: 560 PGWS 563


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/513 (37%), Positives = 286/513 (55%), Gaps = 42/513 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   NT  WN L+ GY  N    E   +F R+     V    ++  +++       
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV----SWTAMVRG-----Y 201

Query: 152 VREGTAIHAAVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V+EG    A  + W + E +V   T ++    +   I  A ++FD MPE++VV+ T MI 
Sbjct: 202 VKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIG 261

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           GY  VG LVEA+ +FD MP R+ VSW  +I G V+   +  AR+LF+ MPE+N VS+T M
Sbjct: 262 GYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAM 321

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN----- 325
           + GY   G +  A  LF A P + VVA +A+I  + QNG+  +A ++F  M  K+     
Sbjct: 322 LKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 326 --------------------------VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
                                     ++P+   L+S++S C+ + NLD    + + L RS
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
             DL   +V + L+ M  KCGN+ +A ++F+    +DVV + S+I G + HG G +A+ +
Sbjct: 442 QFDLD-VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRV 500

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F  M   G+ PD+V F  VL+ACS+ G V+ G   F +M+  Y +    EHYACMVDLLG
Sbjct: 501 FHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLG 560

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G L  A +L+  MP+E  A  WGALLGAC+ +  ++L E+ A +L  LEP+NAG ++L
Sbjct: 561 RAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFIL 620

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LSNIYA+  RW DV  +R  M++R + K PGCS
Sbjct: 621 LSNIYASQGRWDDVAELRRNMRDRRVSKYPGCS 653



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 188/378 (49%), Gaps = 60/378 (15%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +S    +  +  VF+ + + N   WN+++ GY QN R  E   +F          DK + 
Sbjct: 108 YSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF----------DKMS- 156

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
                                  I W           L+  Y     I+ AR+VFD MPE
Sbjct: 157 -------------------ERNTISW---------NGLVSGYINNGMINEAREVFDRMPE 188

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           RNVVSWTAM+ GY   G + EA+T+F  MPE++ VSW  ++GGL++ G +  A +LFD M
Sbjct: 189 RNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM 248

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PE++VV+ T MI GY +VG +  AR LF+  P R+VV+W+ +I+GY QN Q D A K+F 
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE 308

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA-- 377
            M  KN    E    +++   +  G LD ++           +L  A  I ++V  NA  
Sbjct: 309 VMPEKN----EVSWTAMLKGYTNCGRLDEAS-----------ELFNAMPIKSVVACNAMI 353

Query: 378 ----KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
               + G + +A ++F+ M  +D  ++ +MIK     G    A+ LF  M  EG+ P+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 434 AFTIVLTACSHVGLVEDG 451
           +   VL+ C+ +  ++ G
Sbjct: 414 SLISVLSVCAGLANLDHG 431



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 34/311 (10%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SLI  Y +  +I  AR VFDEM ++N++SW +++ GY       EA+ +FD M ER+ +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN L+ G +  G +  AR++FD MPERNVVS+T M+ GY K G ++ A +LF   P+++
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL-------- 346
           VV+W+ ++ G  Q G+ DEA ++F  M  K+V        +++    QVG L        
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFD 277

Query: 347 -----DLSNW---VDSYLSRSHMDLSRA--HVI--------AALVDMNAKCGNMDRAAEL 388
                ++ +W   +  Y+    +D++R    V+         A++     CG +D A+EL
Sbjct: 278 EMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASEL 337

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  MP + VV+  +MI     +G   +A  +FD+M  +    DE  ++ ++      GL 
Sbjct: 338 FNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK----DEGTWSAMIKVYERKGLE 393

Query: 449 EDGWRFFEAMQ 459
            D    F  MQ
Sbjct: 394 LDALELFRMMQ 404



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 169/330 (51%), Gaps = 27/330 (8%)

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           ++S  ++I  Y+ +G + +A+ VFD M +++ +SWN+++ G  +    + A+ +FD+M E
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           RN +S+  ++ GY   G +  AR +F+  P+R+VV+W+A++ GY + G   EA  +F  M
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM 217

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             KNV     +L  L+    Q G +D +  +   +    + ++R ++I        + G 
Sbjct: 218 PEKNVVSWTVMLGGLL----QEGRIDEACRLFDMMPEKDV-VTRTNMIGGY----CQVGR 268

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  LF+ MP R+VVS+ +MI G   +     A  LF+ M  +    +EV++T +L  
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKG 324

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPH 499
            ++ G +++    F AM       P     AC  M+   G+ G +  A ++ + M  E  
Sbjct: 325 YTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKD 376

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFEL 529
              W A++   K+Y    L EL A  LF +
Sbjct: 377 EGTWSAMI---KVYERKGL-ELDALELFRM 402



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 19/277 (6%)

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           LC      +  +  VF+++   +   W+ ++K Y +    ++   +F  + RE   P+  
Sbjct: 354 LCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFP 413

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           +   V+  C+ + ++  G  IHA ++R   D DV+V + L+ +Y K   ++ A++VFD  
Sbjct: 414 SLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRS 251
             ++VV W ++I GYA  G  VEA  VF       +MP+  +V++  ++      G+++ 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD--DVTFVGVLSACSYTGNVKK 531

Query: 252 ARQLFDEMP-----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGY 305
             ++F+ M      E+ +  Y  M+D   + G +  A  L E  P + D + W AL+   
Sbjct: 532 GLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGAC 591

Query: 306 AQNGQPD---EAVKIFSDMCSKNVQPDEFILVSLMSA 339
             + + D    A K    +  KN  P  FIL+S + A
Sbjct: 592 RTHMKLDLAEVAAKKLLVLEPKNAGP--FILLSNIYA 626


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/496 (36%), Positives = 290/496 (58%), Gaps = 44/496 (8%)

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE-GTAIHAAVIRWGVDEDVFVGTSLI 178
           +  ++V ++   A PD YTFP ++KA +        G A+HA V+++G++ +  V +SL+
Sbjct: 2   LLRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLV 61

Query: 179 DLYGKRKEISCARKVFDEMPERNV---VSWTAMIVGY----------ASVGDLVEAKTVF 225
            +Y  R + + AR + D  P R     V W A+I G+           S  D+V    V 
Sbjct: 62  LMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVP 121

Query: 226 DLMPERSNVS--------W---------------------NALIGGLVKIGDLRSARQLF 256
             +   + +S        W                     NALI    +  ++ +A +LF
Sbjct: 122 TPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELF 181

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           + M  RN VS+T++I G+ ++G +  AR+LF+  P+RD V+W+A+I GY Q GQ  EA++
Sbjct: 182 EGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALE 241

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F +M    V+ DEF +VS+++AC+Q+G L+   W   Y+SR  + +    V  ALVDM 
Sbjct: 242 MFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMD-TFVGNALVDMY 300

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           +KCG++ +A  +F+ M  RD  ++ ++I GL+++GHG +A+++F RML     PDEV F 
Sbjct: 301 SKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFI 360

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            VLTAC+H GLV+ G  FF +M   Y I P+  H+ C++DLLGR G LK A E + +MP+
Sbjct: 361 GVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPM 420

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
            P+++ WG LL AC+++ + E+G+L A  L EL+ +N   Y+LLSN+YA ++RW DV  +
Sbjct: 421 RPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRL 480

Query: 557 RSKMKERGLRKIPGCS 572
           R  + E+G++K PGCS
Sbjct: 481 RQVIMEKGIKKEPGCS 496



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 201/439 (45%), Gaps = 51/439 (11%)

Query: 18  SMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS 77
            ML   +R     FP    LL A+T     +       VH+H++K G+E +  + +  + 
Sbjct: 8   GMLARGARPDAYTFPP---LLKAVT--AAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 78  LCHSLATPLSYSTAV--FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
           +  +        T +  +         +WN L+ G+ ++ +F      FV ++R   VP 
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPT 122

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
             T+  V+ AC     +  G  +H  V+  GV  D+ VG +LID+Y +  E+  A ++F+
Sbjct: 123 PVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFE 182

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255
            M  RN VSWT++I G+  +G + +A+T+FD MPER  VSW A+I G V+ G  R A ++
Sbjct: 183 GMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEM 242

Query: 256 FDEMP-------ERNVVSYTT--------------------------------MIDGYAK 276
           F EM        E  +VS  T                                ++D Y+K
Sbjct: 243 FREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSK 302

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G +  A  +F+    RD   W+A+I G A NG  +EA+ +F  M      PDE   + +
Sbjct: 303 CGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGV 362

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFETMPN 394
           ++AC+  G +D     D +LS +       +V+    L+D+  + G +  A E    MP 
Sbjct: 363 LTACTHAGLVDKGR--DFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPM 420

Query: 395 R-DVVSYCSMIKGLSIHGH 412
           R +   + +++    +HG+
Sbjct: 421 RPNSAIWGTLLAACRVHGN 439



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 157/382 (41%), Gaps = 56/382 (14%)

Query: 70  SLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
           S+++ F+ L       +  +  +F+ +   +T  W  ++ GY Q  +F E   +F  +  
Sbjct: 194 SVISGFLRLGQ-----VDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQF 248

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
            +   D++T   V+ AC+ + ++  G      + R G+  D FVG +L+D+Y K   I  
Sbjct: 249 SKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQ 308

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVK 245
           A  VF EM  R+  +WTA+I+G A  G   EA  +F  M         V++  ++     
Sbjct: 309 ALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTH 368

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G +   R  F  M                           +  AP  +V+ +  LI   
Sbjct: 369 AGLVDKGRDFFLSMT------------------------GSYGIAP--NVMHFGCLIDLL 402

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            + G+  EA++   +M    ++P+  I  +L++AC   GN ++      +L    +D   
Sbjct: 403 GRAGKLKEALETIGNM---PMRPNSAIWGTLLAACRVHGNSEIGQLAAEHL--LELDTEN 457

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY--CSMIK----------GLSIHGHG 413
             V   L ++ AK    +    L + +  + +     CS+I+          G   H   
Sbjct: 458 GMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMS 517

Query: 414 RQAVSLFDRMLSE----GLTPD 431
           ++  S  D++L++    G  PD
Sbjct: 518 KEIYSKLDKVLTDLKDAGYVPD 539



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 9/183 (4%)

Query: 59  HIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI 118
           ++ + G++ D + V + +   +S    +  +  VF  +   + F W  ++ G + N    
Sbjct: 280 YMSRHGIKMD-TFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGE 338

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI-RWGVDEDVFVGTSL 177
           E   +F R++R    PD+ TF  V+ AC+H   V +G     ++   +G+  +V     L
Sbjct: 339 EAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCL 398

Query: 178 IDLYGKRKEISCARKVFDEMPER-NVVSWTAMIV-----GYASVGDLVEAKTVFDLMPER 231
           IDL G+  ++  A +    MP R N   W  ++      G + +G L  A+ + +L  E 
Sbjct: 399 IDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLA-AEHLLELDTEN 457

Query: 232 SNV 234
             V
Sbjct: 458 GMV 460


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/481 (38%), Positives = 283/481 (58%), Gaps = 10/481 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   N   W ++++GY Q     E   +F  + R   V    ++ ++I        
Sbjct: 105 VFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV----SWTVMIGGLLKESR 160

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +   +   +     ++DV V T++I  Y +   +  AR++FDEM  RNV +WT M+ G
Sbjct: 161 IDDAKKLFDMI----PEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSG 216

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           YA  G +  A+ +F++MPER+ VSW A++ G  + G ++ A +LF+ MP + +V+   MI
Sbjct: 217 YAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMI 276

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             +   G+M  AR +FE   +RD   W+A+I  + + G   EA+ +F+ M  + V  +  
Sbjct: 277 LQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFP 336

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            ++S++S C+ + +LD    V + L RS  D    +V + L+ M  KCG++ RA  +F  
Sbjct: 337 SMISVLSVCASLASLDHGRQVHARLVRSEFD-QDLYVASVLITMYVKCGDLVRAKGIFNR 395

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              +DVV + SMI G S HG G +A+++F  M S G+ PDEV F  VL+ACS+ G V++G
Sbjct: 396 FLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEG 455

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
           +  FEAM+  Y + P  EHYACMVDLLGR G +  A EL+  MP+EP A  WGALLGAC+
Sbjct: 456 FEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACR 515

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
            +  ++L E+   +L +LEP+NAG YVLLS++YAT  RW DV ++R K+  R + K PGC
Sbjct: 516 NHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGC 574

Query: 572 S 572
           S
Sbjct: 575 S 575



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 153/283 (54%), Gaps = 21/283 (7%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             +I  Y K   ++ ARKVFD MPERNVVSWT+M+ GY   G + EA+ +F  MP R+ V
Sbjct: 87  NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV 146

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SW  +IGGL+K   +  A++LFD +PE++VV  T MI GY +VG +  AR LF+    R+
Sbjct: 147 SWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRN 206

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           V  W+ ++SGYA+NG+ D A K+F  M  +N    E    +++   +Q G +        
Sbjct: 207 VFTWTTMVSGYAKNGRVDVARKLFEVMPERN----EVSWTAMLMGYTQSGRM-------- 254

Query: 355 YLSRSHMDLSRAHVIAALVDMN------AKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
              +   +L  A  +  +V  N         G M RA  +FE M  RD  ++ +MIK   
Sbjct: 255 ---KEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFE 311

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
             G   +A+ LF RM  EG+  +  +   VL+ C+ +  ++ G
Sbjct: 312 RKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 142/251 (56%), Gaps = 11/251 (4%)

Query: 175 TSLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           TS I  YG+  +I  ARKVFD   +P+R + SW AM+  Y       +A  +FD MP+R+
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
            VS+N +I G VK G +  AR++FD MPERNVVS+T+M+ GY + G +  A  LF   P 
Sbjct: 83  TVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR 142

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           R+VV+W+ +I G  +  + D+A K+F  +  K+V     ++ +++    QVG LD     
Sbjct: 143 RNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV----VVVTNMIGGYCQVGRLD----- 193

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
           ++      M +        +V   AK G +D A +LFE MP R+ VS+ +M+ G +  G 
Sbjct: 194 EARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGR 253

Query: 413 GRQAVSLFDRM 423
            ++A  LF+ M
Sbjct: 254 MKEAFELFEAM 264



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 159/340 (46%), Gaps = 25/340 (7%)

Query: 66  EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFV 125
           E+D  +V + I   +     L  +  +F+ +   N F W T++ GY++N R      +F 
Sbjct: 173 EKDVVVVTNMIG-GYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLF- 230

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTA---IHAAVIRWGVDEDVFVGTSLIDLYG 182
                E +P++           +  S R   A     A  ++W     +     +I  +G
Sbjct: 231 -----EVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKW-----IVACNEMILQFG 280

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN----- 237
              E+  AR +F+ M ER+  +W AMI  +   G  +EA  +F  M +R  V+ N     
Sbjct: 281 LAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM-QREGVALNFPSMI 339

Query: 238 ALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           +++     +  L   RQ+   +     ++++   + +I  Y K GD+  A+ +F     +
Sbjct: 340 SVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK 399

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           DVV W+++I+GY+Q+G  +EA+ +F DMCS  VQPDE   + ++SACS  G +     + 
Sbjct: 400 DVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIF 459

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             +  ++         A +VD+  + G +D A EL E MP
Sbjct: 460 EAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMP 499



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 145/317 (45%), Gaps = 58/317 (18%)

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQ-------------------------------- 254
           ++  RS  S  + I    +IGD+ +AR+                                
Sbjct: 13  MVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDAL 72

Query: 255 -LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            LFD+MP+RN VS+  MI GY K G +  AR +F+  P+R+VV+W++++ GY Q G  +E
Sbjct: 73  LLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEE 132

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL---SRAHVIA 370
           A K+F +M  +NV          +S    +G L   + +D   ++   D+       V+ 
Sbjct: 133 AEKLFWEMPRRNV----------VSWTVMIGGLLKESRIDD--AKKLFDMIPEKDVVVVT 180

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
            ++    + G +D A ELF+ M  R+V ++ +M+ G + +G    A  LF+ M       
Sbjct: 181 NMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER---- 236

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           +EV++T +L   +  G +++ +  FEAM  V  IV   E    M+   G  G +  A  +
Sbjct: 237 NEVSWTAMLMGYTQSGRMKEAFELFEAMP-VKWIVACNE----MILQFGLAGEMHRARMM 291

Query: 491 LNSMPVEPHASAWGALL 507
              M  E     W A++
Sbjct: 292 FEGMK-ERDEGTWNAMI 307



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 138/302 (45%), Gaps = 21/302 (6%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCH------SLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            S  +K+  E   ++   +I  C+       LA  +  +  +F  +   +   WN ++K 
Sbjct: 250 QSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKV 309

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           + +    +E   +F R+ RE    +  +   V+  C+ + S+  G  +HA ++R   D+D
Sbjct: 310 FERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQD 369

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-- 228
           ++V + LI +Y K  ++  A+ +F+    ++VV W +MI GY+  G   EA  VF  M  
Sbjct: 370 LYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCS 429

Query: 229 --PERSNVSWNALIGGLVKIGDLRSARQLFDEMP-----ERNVVSYTTMIDGYAKVGDMT 281
              +   V++  ++      G ++   ++F+ M      E  +  Y  M+D   + G + 
Sbjct: 430 SGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVD 489

Query: 282 SARSLFEAAP-DRDVVAWSALISGYAQNGQPD---EAVKIFSDMCSKNVQPDEFILVSLM 337
            A  L E  P + D + W AL+     + + D    AV+  + +  KN  P  ++L+S M
Sbjct: 490 EAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGP--YVLLSHM 547

Query: 338 SA 339
            A
Sbjct: 548 YA 549



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 6/183 (3%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           +NFP    ++S L++        H  QVH+ +++   +QD  + +  I++ +     L  
Sbjct: 333 LNFPS---MISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITM-YVKCGDLVR 388

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +FNR +  +  +WN+++ GYSQ+    E   +F  +      PD+ TF  V+ ACS+
Sbjct: 389 AKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSY 448

Query: 149 VLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
              V+EG  I  A+   + V+  +     ++DL G+   +  A ++ ++MP E + + W 
Sbjct: 449 SGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWG 508

Query: 207 AMI 209
           A++
Sbjct: 509 ALL 511


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 167/394 (42%), Positives = 246/394 (62%), Gaps = 1/394 (0%)

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNAL 239
           L+G    +  A KVF EM E+NVV WT+MI GY    DLV A+  FDL PER  V WN +
Sbjct: 34  LFGTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTM 93

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
           + G +++G++  AR LFD+MP R+V+S+ T+++GYA +GDM +   +F+   +R+V +W+
Sbjct: 94  VAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWN 153

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
            LI GYAQNG+  E +  F  M  + +V P++  L  ++SAC+++G  D    V  Y   
Sbjct: 154 GLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGEN 213

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
              +    +V  AL+DM  KCG ++ A E+F+ +  RD++S+ +MI GL+ HGHG +A+ 
Sbjct: 214 LGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALD 273

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF  M + G++PD+V F  VL AC H+GLVEDG  +F +M   ++I P  EH  C+VDLL
Sbjct: 274 LFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLL 333

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
            R G L  A E +N MPV+  A  W  LLGA K+Y  ++ GEL    L +LEP+N  ++V
Sbjct: 334 SRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFV 393

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +LSNIY  A R+ D   ++  M++ G +K  G S
Sbjct: 394 MLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGIS 427



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 56/322 (17%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LWNT++ GY +    +E  ++F      + +P           C  V+S           
Sbjct: 89  LWNTMVAGYIEMGNMMEARSLF------DQMP-----------CRDVMS----------- 120

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
             W          ++++ Y    ++    +VFDEM ERNV SW  +I GYA  G + E  
Sbjct: 121 --W---------NTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVL 169

Query: 223 TVFDLMPERSNV-----SWNALIGGLVKIGDLRSARQL--FDEMPERNVVSYTT---MID 272
             F  M +  +V     +   ++    K+G     +++  + E    N V       +ID
Sbjct: 170 GSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALID 229

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y K G +  A  +F+    RD+++W+ +I+G A +G   EA+ +F +M +  + PD+  
Sbjct: 230 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVT 289

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI---AALVDMNAKCGNMDRAAELF 389
            V ++ AC  +G ++      +Y +    D S    I     +VD+ ++ G + +A E  
Sbjct: 290 FVGVLCACKHMGLVEDGL---AYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFI 346

Query: 390 ETMPNR-DVVSYCSMIKGLSIH 410
             MP + D V + +++    ++
Sbjct: 347 NKMPVKADAVIWATLLGASKVY 368



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 21/261 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           VF+ ++  N F WN L+KGY+QN R  EV   F R++ E +V P+  T  LV+ AC+ + 
Sbjct: 140 VFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLG 199

Query: 151 SVREGTAIHAAVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +   G  +H      G ++ DV V  +LID+YGK   I  A +VF  +  R+++SW  MI
Sbjct: 200 AFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMI 259

Query: 210 VGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
            G A+ G   EA  +F  M      P++  V++  ++     +G +      F+ M    
Sbjct: 260 NGLAAHGHGTEALDLFHEMKNCGISPDK--VTFVGVLCACKHMGLVEDGLAYFNSMFTDF 317

Query: 264 VVSYTT-----MIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISG---YAQNGQPDEA 314
            ++        ++D  ++ G +T A       P + D V W+ L+     Y +    + A
Sbjct: 318 SITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELA 377

Query: 315 VKIFSDMCSKNVQPDEFILVS 335
           +K    +  +N  P  F+++S
Sbjct: 378 LKELIKLEPRN--PANFVMLS 396


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/530 (36%), Positives = 284/530 (53%), Gaps = 40/530 (7%)

Query: 52   HLHQVHSHI-IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            +L ++HS I I   L  + SL    +        P S +  +F+ I   N   +N +++ 
Sbjct: 1042 YLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWS-TRHIFDEIPKKNVVFFNVMIRS 1100

Query: 111  YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            Y  N  + +   +F  +      PD YT+P V+KA S    +  G  IHAAV+R G+D +
Sbjct: 1101 YVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLN 1160

Query: 171  VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            VFVG  LI +YGK                                G LVEA  V D MP 
Sbjct: 1161 VFVGNGLISMYGK-------------------------------CGCLVEACRVLDZMPC 1189

Query: 231  RSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMIDGYAKVGDMTSAR 284
            R  VSWN+L+ G  + G    A ++  EM      P+   ++          + +++  +
Sbjct: 1190 RDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVK 1249

Query: 285  SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
             +F    ++ +V+W+ +I+ Y  N  P EAV IF  M    V PD   + S++ AC  + 
Sbjct: 1250 EMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLS 1309

Query: 345  NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
             L L   +  Y+ R  +  +   +  AL+DM AKCG ++ A E+F+ M  RDVVS+ SMI
Sbjct: 1310 ALLLGRRIHEYVVRKRLQPNLL-LENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMI 1368

Query: 405  KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
                ++G GR AVSLF RM   GL PD +AF  VL+ACSH GL+++G  +F+ M     I
Sbjct: 1369 SAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 1428

Query: 465  VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            VP  EH+ CMVDLLGR G +  AY  +  MP+EP+   WGALL AC++YS++ +G L A+
Sbjct: 1429 VPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAAD 1488

Query: 525  RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            +LF+L P+ +G YVLLSNIYA A RW DV  VRS MK +G++K+PG S+ 
Sbjct: 1489 QLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNF 1538


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/377 (42%), Positives = 242/377 (64%), Gaps = 1/377 (0%)

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256
           M E+NVV WT+MI GY    DLV A+  FDL PER  V WN +I G +++G++  AR LF
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           D+MP R+V+S+ T+++GYA +GDM +   +F+  P+R+V +W+ LI GYAQNG+  E + 
Sbjct: 61  DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLG 120

Query: 317 IFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
            F  M  + +V P++  +  ++SAC+++G  D   WV  Y      +    +V  AL+DM
Sbjct: 121 SFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDM 180

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
             KCG ++ A E+F+ +  RD++S+ +MI GL+ HGHG +A++LF  M + G++PD+V F
Sbjct: 181 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 240

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             VL AC H+GLVEDG  +F +M   ++I+P  EH  C+VDLL R G L  A E +N MP
Sbjct: 241 VGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMP 300

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           V+  A  W  LLGA K+Y  +++GE+    L +LEP+N  ++V+LSNIY  A R+ D   
Sbjct: 301 VKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAAR 360

Query: 556 VRSKMKERGLRKIPGCS 572
           ++  M++ G +K  G S
Sbjct: 361 LKVAMRDTGFKKEAGVS 377



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 63/375 (16%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LWNT++ GY +    +E  ++F ++                  C  V+S           
Sbjct: 39  LWNTMISGYIEMGNMLEARSLFDQM-----------------PCRDVMS----------- 70

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
             W          ++++ Y    ++    +VFD+MPERNV SW  +I GYA  G + E  
Sbjct: 71  --W---------NTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVL 119

Query: 223 TVFDLMPERSNVSWNALIGGLV-----KIG--DLRSARQLFDEMPERNVVSYTT---MID 272
             F  M +  +V  N     LV     K+G  D       + E    N V       +ID
Sbjct: 120 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALID 179

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y K G +  A  +F+    RD+++W+ +I+G A +G   EA+ +F +M +  + PD+  
Sbjct: 180 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 239

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI---AALVDMNAKCGNMDRAAELF 389
            V ++ AC  +G ++      +Y +    D S    I     +VD+ ++ G + +A E  
Sbjct: 240 FVGVLCACKHMGLVEDGL---AYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFI 296

Query: 390 ETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVA-FTIVLTACSHV 445
             MP + D V + +++    ++    + V + +  L E   L P   A F ++       
Sbjct: 297 NKMPVKADAVIWATLLGASKVY----KKVDIGEVALEELIKLEPRNPANFVMLSNIYGDA 352

Query: 446 GLVEDGWRFFEAMQN 460
           G  +D  R   AM++
Sbjct: 353 GRFDDAARLKVAMRD 367



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 18/227 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVL 150
           VF+ +   N F WN L+KGY+QN R  EV   F R++ E   VP+  T  LV+ AC+ + 
Sbjct: 90  VFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLG 149

Query: 151 SVREGTAIHAAVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +   G  +H      G ++ DV V  +LID+YGK   I  A +VF  +  R+++SW  MI
Sbjct: 150 AFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMI 209

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWN--ALIG--------GLVKIG--DLRSARQLFD 257
            G A+ G   EA  +F  M + S +S +    +G        GLV+ G     S    F 
Sbjct: 210 NGLAAHGHGTEALNLFHEM-KNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFS 268

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
            MPE  +     ++D  ++ G +T A       P + D V W+ L+ 
Sbjct: 269 IMPE--IEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLG 313


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/477 (36%), Positives = 277/477 (58%), Gaps = 43/477 (9%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   WNT++ GY +N    +   +F R+                    H  ++    A+
Sbjct: 67  KNVVSWNTMIDGYGKNREVDKAIEVFERM--------------------HERNMVSWNAV 106

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            AA+++ G  E+                   AR+ FDEMP+R+V+SWT M++G A  G +
Sbjct: 107 IAALVQCGRVEE-------------------ARRRFDEMPKRDVISWTTMVMGLARSGRV 147

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
            EA+ VFD MPER+ VSWNA++ G  K   L  A  LF+ MPERN+ S+ TMI G+ + G
Sbjct: 148 DEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNG 207

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLM 337
           ++  AR +F   P+++VV+W+ +I+GY Q G+ + A+K+F +M      +P+E   V+++
Sbjct: 208 ELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVL 267

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE--TMPNR 395
            ACS +  L     V   +S+S +   R  V +AL++M +KCG +  A ++F+   +  R
Sbjct: 268 GACSDMAGLGEGQQVHLLISKS-VYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQR 326

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D+V +  MI   + HG G +A+ LF+ M   G  P++V++  +L+ACSH GLV++G  +F
Sbjct: 327 DLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYF 386

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           + +    +I    +H+AC+VDL GR G LK AY+ +  +  +  +S WG LL  C  + D
Sbjct: 387 DELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGD 446

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +E+G+L A  L + +P+NAG+Y+LLSNIYA+  +W +   VR KMKE+GL+K PGCS
Sbjct: 447 LEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCS 503



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 155/284 (54%), Gaps = 41/284 (14%)

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
           +DV   T+++  Y + K I  A ++F+ MP +NVVSW  MI GY    ++ +A  VF+ M
Sbjct: 36  KDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERM 95

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
            ER+ VSWNA+I  LV+ G +  AR+ FDEMP+R+V+S+TTM+ G A+ G +  AR +F+
Sbjct: 96  HERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFD 155

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
             P+R+VV+W+A+++GYA+N + DEA  +F  M  +N                      L
Sbjct: 156 RMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERN----------------------L 193

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
           S+W                +I   +    + G +  A ++F  MP ++VVS+ +MI G  
Sbjct: 194 SSW--------------NTMITGFI----QNGELAWARKVFNEMPEKNVVSWTTMITGYV 235

Query: 409 IHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDG 451
             G    A+ +F  M+ + G  P+E  F  VL ACS +  + +G
Sbjct: 236 QEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEG 279



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVI 143
            L+++  VFN +   N   W T++ GY Q         +FV +I++  A P++ TF  V+
Sbjct: 208 ELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVL 267

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE--MPERN 201
            ACS +  + EG  +H  + +    +  FV ++L+++Y K  E+S ARK+FD+  + +R+
Sbjct: 268 GACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRD 327

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFD 257
           +V W  MI  YA  G  +EA  +F+ M     + ++VS+  L+      G +      FD
Sbjct: 328 LVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFD 387

Query: 258 EMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVA-WSALISGYAQNG 309
           E+   N +      +  ++D   + G +  A    +    +   + W  L++G   +G
Sbjct: 388 ELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHG 445


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/487 (36%), Positives = 283/487 (58%), Gaps = 36/487 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV----PDKYTFPL 141
           ++++  VF++I  P+ F++NTL++G +  +   +  +++ R++R        PDK TFP 
Sbjct: 28  IAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPF 87

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V++AC+ + +   G  +HA V++ G + D FV  +LI ++                    
Sbjct: 88  VLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMH-------------------- 127

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
                      AS G+L  A  +FD       V+W+A+I G  + GD+ +AR LFDE P 
Sbjct: 128 -----------ASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPV 176

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           +++VS+  MI  YAK GDM  AR LF+  P+RDVV+W+ +ISGY + G    A+++F  M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCG 380
                +PD   ++SL+SAC+  G+LD+   + S LS          V+  AL+DM AKCG
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +M  A E+F +M ++DV ++ S++ GL++HGH  +++ +F++ML   + PDE+ F  VL 
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH G+V+ G  FF  MQ+ Y + P+ +HY C+VD+LGR G LK A+E +++M  EP++
Sbjct: 357 ACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNS 416

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W  LL AC+++ +IEL +    +L +     +G YVLLSNIYA+   W     +R  M
Sbjct: 417 VIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLM 476

Query: 561 KERGLRK 567
            + G+ K
Sbjct: 477 DDSGVNK 483



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 164/370 (44%), Gaps = 55/370 (14%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+H++K G E D + V + +   H+    L  + A+F+     +   W+ ++ G ++ 
Sbjct: 103 QVHAHVVKAGCESD-AFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARR 161

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   +F     E  V D                          ++ W V       
Sbjct: 162 GDIGAARDLF----DECPVKD--------------------------LVSWNV------- 184

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
             +I  Y KR +++ AR++FD++PER+VVSW  MI GY   G  + A  +F+ M      
Sbjct: 185 --MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEK 242

Query: 234 ---VSWNALIGGLVKIGDLRSARQL---FDEMPERN---VVSYTTMIDGYAKVGDMTSAR 284
              V+  +L+      GDL   ++L     +M  RN   VV    +ID YAK G M SA 
Sbjct: 243 PDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAH 302

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F +  D+DV  W++++ G A +G   E++ +F  M    V+PDE   V+++ ACS  G
Sbjct: 303 EVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGG 362

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDVVSYC 401
            +D      + +   +           +VDM  + G +  A E  +TM   PN   V + 
Sbjct: 363 MVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNS--VIWR 420

Query: 402 SMIKGLSIHG 411
           +++    +HG
Sbjct: 421 TLLSACRVHG 430



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 134/309 (43%), Gaps = 44/309 (14%)

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE----------AAPDRDVV 296
           G +  A  +FD++P  +   Y T+I G A       A SL+             PD+  +
Sbjct: 26  GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDK--L 83

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            +  ++      G  D  V++ + +     + D F+  +L+   +  GNL ++  +  + 
Sbjct: 84  TFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAAL--FD 141

Query: 357 SRSHMDL----------SRAHVIAALVDMNAKC------------------GNMDRAAEL 388
            R+  D           +R   I A  D+  +C                  G+M  A EL
Sbjct: 142 GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALAREL 201

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+ +P RDVVS+  MI G    G    A+ LF++M   G  PD V    +L+AC+  G +
Sbjct: 202 FDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDL 261

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           + G R   ++ ++++    P      ++D+  + G +KSA+E+  SM  +   S W +++
Sbjct: 262 DVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMR-DKDVSTWNSIV 320

Query: 508 GACKLYSDI 516
           G   L+  +
Sbjct: 321 GGLALHGHV 329


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 210/649 (32%), Positives = 326/649 (50%), Gaps = 120/649 (18%)

Query: 42  TLIKKCKLQTHL---HQVHSHIIKKGL---EQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           +L+++C  +  +    Q+H+H I  GL      H L++  ++  +++     ++  +F+ 
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSS-LAAAYAMCGCAPHARKLFDE 81

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVRE 154
           + NP+ F WN +++ Y+ +    +   +FV+++      PD YT+P VIKAC   L    
Sbjct: 82  LRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IHA  +  G D D FV  SL+ +Y    E+  AR+VFD M ER +VSW  MI GY  
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 215 VGDLVEAKTVFDLM------PERSNV---------------------------------S 235
            G + EA  VFD M      P+ + V                                  
Sbjct: 202 NGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISV 261

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL-----FEAA 290
           WN+L+    K G++  A+ +F EM +R+VVS+TTM++GY   GD  SA  L     FE+ 
Sbjct: 262 WNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESV 321

Query: 291 P----------------------------------DRDVVAWSALISGYAQ--------- 307
                                              + +V+  +ALI  YA+         
Sbjct: 322 KPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFR 381

Query: 308 ----------------------NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
                                 NG   +A+++F  M  + V P++  L SL+ A + + +
Sbjct: 382 VFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTD 441

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSM 403
           L  +  +  YL RS   LSR  V   L+D+ +KCG+++ A  +F  +P  ++D++++ ++
Sbjct: 442 LQQARNMHGYLIRSGF-LSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAI 500

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G  +HGHG  A+SLFD+M+  G+ P+E+ FT +L ACSH GLV++G   F+ M     
Sbjct: 501 IAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQ 560

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           +    +HY C++DLLGR G L+ AYEL+ +M   P+ + WGALLG+C ++ ++ELGE+ A
Sbjct: 561 MSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAA 620

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             LFELEP N G+YVLL+NIY+   RW D   VR  M   GLRK P  S
Sbjct: 621 KWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHS 669


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/482 (35%), Positives = 283/482 (58%), Gaps = 10/482 (2%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   W  ++ G SQNS+F E    F  +     VP ++ F   I+AC+ + S+  G  +H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
              +++G+  ++FVG++L D+Y K   +  A KVF+EMP ++ VSWTAMI GY+ +G+  
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 124

Query: 220 EAKTVFDLM-PERSNVSWNALIGGLVKIGDLRSAR-------QLFDEMPERNVVSYTTMI 271
           EA   F  M  E   +  + L   L   G L++ +        +     E ++     + 
Sbjct: 125 EALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALT 184

Query: 272 DGYAKVGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           D Y+K GDM SA ++F    + R+VV+++ LI GY +  Q ++ + +F ++  + ++P+E
Sbjct: 185 DMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNE 244

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
           F   SL+ AC+    L+    + + + + + D     V + LVDM  KCG +++A + F+
Sbjct: 245 FTFSSLIKACANQAALEQGTQLHAQVMKINFD-EDPFVSSILVDMYGKCGLLEQAIQAFD 303

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            + +   +++ S++     HG G+ A+ +F+RM+  G+ P+ + F  +LT CSH GLVE+
Sbjct: 304 EIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEE 363

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F +M   Y +VP  EHY+C++DLLGR G LK A E +N MP EP+A  W + LGAC
Sbjct: 364 GLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC 423

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ D E+G+L A +L +LEP+N+G+ VLLSNIYA   +W DV  VR +M++  ++K+PG
Sbjct: 424 RIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPG 483

Query: 571 CS 572
            S
Sbjct: 484 YS 485



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 23/373 (6%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H   +K G+  +   V   +   +S    +  +  VF  +   +   W  ++ GYS+ 
Sbjct: 62  QMHCLALKFGIGSE-LFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F E    F ++I EE   D++     + AC  + + + G ++H++V++ G + D+FVG
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 175 TSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
            +L D+Y K  ++  A  VF    E RNVVS+T +I GY     + +  +VF  +     
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQL--------FDEMPERNVVSYTTMIDGYAKVGDMT 281
           E +  ++++LI        L    QL        FDE P    VS + ++D Y K G + 
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDP---FVS-SILVDMYGKCGLLE 296

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            A   F+   D   +AW++L+S + Q+G   +A+KIF  M  + V+P+    +SL++ CS
Sbjct: 297 QAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS 356

Query: 342 QVGNLDLSNWVDSYLS--RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVV 398
             G ++    +D + S  +++  +      + ++D+  + G +  A E    MP   +  
Sbjct: 357 HAGLVE--EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAF 414

Query: 399 SYCSMIKGLSIHG 411
            +CS +    IHG
Sbjct: 415 GWCSFLGACRIHG 427



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 157/320 (49%), Gaps = 12/320 (3%)

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSA 252
           MP+RN+VSWTAMI G +      EA   F  M     V    ++++ I     +G +   
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 253 RQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           +Q+     +  + S     + + D Y+K G M  A  +FE  P +D V+W+A+I GY++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G+ +EA+  F  M  + V  D+ +L S + AC  +        V S + +   + S   V
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-SDIFV 179

Query: 369 IAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
             AL DM +K G+M+ A+ +F      R+VVSY  +I G        + +S+F  +  +G
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           + P+E  F+ ++ AC++   +E G +    +  +      P   + +VD+ G+ G L+ A
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI-NFDEDPFVSSILVDMYGKCGLLEQA 298

Query: 488 YELLNSMPVEPHASAWGALL 507
            +  + +  +P   AW +L+
Sbjct: 299 IQAFDEIG-DPTEIAWNSLV 317



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 35/263 (13%)

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P R++V+W+A+ISG +QN +  EA++ F  M      P +F   S + AC+ +G++++  
Sbjct: 2   PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 61

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            +     +  +  S   V + L DM +KCG M  A ++FE MP +D VS+ +MI G S  
Sbjct: 62  QMHCLALKFGIG-SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVEDGWRF----- 454
           G   +A+  F +M+ E +T D+      L AC            H  +V+ G+       
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 455 ------------FEAMQNVYAIVPSPEH---YACMVDLLGRTGHLK---SAYELLNSMPV 496
                        E+  NV+ I     +   Y C++D    T  ++   S +  L    +
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 497 EPHASAWGALLGACKLYSDIELG 519
           EP+   + +L+ AC   + +E G
Sbjct: 241 EPNEFTFSSLIKACANQAALEQG 263



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           MP R++VS+ +MI GLS +    +A+  F  M   G  P + AF+  + AC+ +G +E G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
            +    +   + I       + + D+  + G +  A ++   MP +   S W A++    
Sbjct: 61  -KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDGYS 118

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
              + E   L   ++ + E      +VL S + A
Sbjct: 119 KIGEFEEALLAFKKMID-EEVTIDQHVLCSTLGA 151


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/404 (41%), Positives = 265/404 (65%), Gaps = 6/404 (1%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           DV    ++I  Y K  E+  A++VFDEMP RN VSW+ M+ GYA+ G+L  A+ +FD MP
Sbjct: 23  DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 82

Query: 230 E--RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
              R+ V+WN+++ G  + G L  AR++FDEMP RN+VS+  M+ GY+   DM  AR LF
Sbjct: 83  AIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELF 142

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNL 346
           +  P++DVV+W+ +ISGYAQ G+  + +++F  M ++ NVQP+E  +VS++SAC+ +  L
Sbjct: 143 DVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTAL 202

Query: 347 DLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           +   WV +++ +  M L+  + + AAL+DM AKCG  D A ++F ++  ++V ++ ++I 
Sbjct: 203 EEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALIT 262

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
            L+++G+ R +V  F++M   G  P+++ F  VLTACSH GLV++G R F++M +   + 
Sbjct: 263 RLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQ 322

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  +HY CMVD+LGR G L+ A EL+ SMP+ P    +GALLGAC+++   ++ E V + 
Sbjct: 323 PEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSE 382

Query: 526 L--FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           +    L  Q +G +VL+S+IYA A +W DV   R  ++  G+RK
Sbjct: 383 IHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 426



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 150/350 (42%), Gaps = 49/350 (14%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WNT++ GY +         +F  + R   V    T      A   +   RE      A+ 
Sbjct: 27  WNTVIGGYVKCGEMESAKRVFDEMPRRNGVS-WSTMVGGYAAAGELDVAREMFDRMPAIG 85

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           R     +V    S++  + +   +  ARK+FDEMP RN+VSW AM+ GY+   D+  A+ 
Sbjct: 86  R-----NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARE 140

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PERNV-------VSYTT------ 269
           +FD+MPE+  VSW  +I G  + G  +   +LF  M  E NV       VS  +      
Sbjct: 141 LFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLT 200

Query: 270 ----------------------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
                                       +ID YAK G    A  +F +   ++V AW+AL
Sbjct: 201 ALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNAL 260

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           I+  A NG   ++V  F  M     +P++   V +++ACS  G +D        ++ +  
Sbjct: 261 ITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCG 320

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIH 410
                     +VDM  + G ++ A EL  +MP   DV+ + +++    +H
Sbjct: 321 VQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMH 370



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKG--LEQDHSLVAHFISLCHSLATPLSYSTAV 92
           ++ ++++  C   T L +   VH+ I K    L  +++L A  I + ++       +  +
Sbjct: 187 VTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDM-YAKCGRTDIAVKI 245

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           FN +   N   WN L+   + N    +    F ++ R    P+  TF  V+ ACSH   V
Sbjct: 246 FNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLV 305

Query: 153 REG-TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
            EG     +     GV  +V     ++D+ G+   +  A ++   MP
Sbjct: 306 DEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP 352


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 277/483 (57%), Gaps = 13/483 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   N   W  ++KGY Q    +E   +F R+     V     F  +I        
Sbjct: 101 VFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLI-------- 152

Query: 152 VREGTAIHAAVIRWGV--DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +G  I  A   + +   +DV   T++I    +   +  AR++FDEM ERNV++WT MI
Sbjct: 153 --DGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMI 210

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
            GY     +  A+ +F++MPE++ VSW +++ G    G +  A + F+ MP + V++   
Sbjct: 211 TGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNA 270

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           MI    +VG++  AR +F+   DRD   W  +I  Y + G   EA+++F+ M  + V+P 
Sbjct: 271 MIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPS 330

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              L+S++S C+ + +L     V ++L R   D    +V + L+ M  KCG + +A  +F
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFD-GDVYVASVLMTMYVKCGELVKAKLVF 389

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           +  P++D++ + S+I G + HG G +A+ +F  M   G  P++V    +LTACS+ G +E
Sbjct: 390 DRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLE 449

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G   FE+M++ + + P+ EHY+C VD+LGR G +  A EL+NSM ++P A+ WGALLGA
Sbjct: 450 EGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGA 509

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           CK +S ++L E+ A +LFE+EP+NAG Y+LLS+I A+  +W DV  +R  M+ + + K P
Sbjct: 510 CKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFP 569

Query: 570 GCS 572
           GCS
Sbjct: 570 GCS 572



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 153/284 (53%), Gaps = 9/284 (3%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + ++     L+  Y K + I  AR VF+ MPERNVVSWTAM+ GY   G +VEA+ +F  
Sbjct: 76  ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWR 135

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPER+ VSW  + GGL+  G +  AR+L+D MP ++VV+ T MI G  + G +  AR +F
Sbjct: 136 MPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIF 195

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   +R+V+ W+ +I+GY QN + D A K+F  M  K     E    S++   +  G ++
Sbjct: 196 DEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRIE 251

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                D+      M +       A++    + G + +A  +F+ M +RD  ++  MIK  
Sbjct: 252 -----DAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAY 306

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              G   +A+ LF +M  +G+ P   +   +L+ C+ +  ++ G
Sbjct: 307 ERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYG 350



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 27/343 (7%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I+ ARK FD +  + + SW +++ GY + G   EA+ +FD MPER+ VSWN L+ G +K
Sbjct: 32  QINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIK 91

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
              +  AR +F+ MPERNVVS+T M+ GY + G +  A  LF   P+R+ V+W+ +  G 
Sbjct: 92  NRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGL 151

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
              G+ D+A K++  M  K+V          +++ + +G L     VD   +R   D  R
Sbjct: 152 IDGGRIDDARKLYDMMPGKDV----------VASTNMIGGLCREGRVDE--AREIFDEMR 199

Query: 366 AHVIAALVDMNAKCGN---MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
              +     M    G    +D A +LFE MP +  VS+ SM+ G ++ G    A   F+ 
Sbjct: 200 ERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEV 259

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M  + +    +A   ++ A   VG +    R F+ M++          +  M+    R G
Sbjct: 260 MPMKPV----IACNAMIVALGEVGEIVKARRVFDQMED-----RDNATWRGMIKAYERKG 310

Query: 483 HLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELV 522
               A EL   M    V P   +  ++L  C   + ++ G  V
Sbjct: 311 FELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQV 353



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 170/358 (47%), Gaps = 61/358 (17%)

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
           + +G + EA+  FD +  ++  SWN+++ G    G  R ARQ+FDEMPERN+VS+  ++ 
Sbjct: 28  SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVS 87

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           GY K   +  AR++FE  P+R+VV+W+A++ GY Q G   EA  +F  M  +N       
Sbjct: 88  GYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERN------- 140

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
                                        ++S   +   L+D     G +D A +L++ M
Sbjct: 141 -----------------------------EVSWTVMFGGLID----GGRIDDARKLYDMM 167

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P +DVV+  +MI GL   G   +A  +FD M    +    + +T ++T       V+   
Sbjct: 168 PGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDVAR 223

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRT--GHLKSAYELLNSMPVEPHASAWGALLGAC 510
           + FE M       P     +    LLG T  G ++ A E    MP++P   A  A++ A 
Sbjct: 224 KLFEVM-------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKP-VIACNAMIVAL 275

Query: 511 KLYSDIELGELV-ANRLF-ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
                 E+GE+V A R+F ++E ++  ++  +   Y      L+   + ++M+ +G+R
Sbjct: 276 G-----EVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVR 328


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/489 (36%), Positives = 280/489 (57%), Gaps = 10/489 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  + + +T  WN++L G+ QN  + E    +  +      PD      +I A +   +
Sbjct: 339 IFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGN 398

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              G  IHA  ++ G+D D+ VG SL+D+Y K   +     +FD+MP+++VVSWT +I G
Sbjct: 399 TLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAG 458

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALI--------GGLVKIGDLRSARQLFDEMPERN 263
           +A  G    A  +F  + +   +  + ++         GL  I  ++            +
Sbjct: 459 HAQNGSHSRALELFREV-QLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSD 517

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +V    ++D Y + G++  A  +FE    +DVV+W+++IS Y  NG  +EA+++F  M  
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 577

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             V+PD   LVS++SA + +  L     +  +L R    L    + + LVDM A+CG ++
Sbjct: 578 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL-EGSLASTLVDMYARCGTLE 636

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           ++  +F  + N+D+V + SMI    +HG GR A+ LF RM  E + PD +AF  VL ACS
Sbjct: 637 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+ +G RF E+M+  Y + P PEHYAC+VDLLGR  HL+ AY+ +  M VEP A  W
Sbjct: 697 HSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 756

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLGAC+++S+ ELGE+ A +L E++P+N G+YVL+SN+Y+   RW DV  VR +MK  
Sbjct: 757 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKAS 816

Query: 564 GLRKIPGCS 572
           GL+K PGCS
Sbjct: 817 GLKKNPGCS 825



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 219/436 (50%), Gaps = 14/436 (3%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA 83
           +  +P  F       S L L    K  +   QVH+H+I      +   ++  +   +   
Sbjct: 68  ANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKC 127

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLV 142
             L  +  +F+ + +   F WN ++  Y  N   +    ++ R +R   +P D  TFP +
Sbjct: 128 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY-REMRVSGIPLDACTFPCI 186

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-N 201
           +KAC  +   R G  +H   I+ G    VFV  S++ +Y K  +++ AR++FD MPE+ +
Sbjct: 187 LKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 246

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN--ALIGGLVKIGDLRSARQ----- 254
           VVSW +MI  Y+S G  +EA  +F  M ++++++ N    +  L    D    +Q     
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIH 305

Query: 255 --LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
             +       NV     +I  YA+ G M  A ++F    D D ++W++++SG+ QNG   
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 365

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA++ + +M     +PD   ++S+++A ++ GN      + +Y  ++ +D S   V  +L
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLD-SDLQVGNSL 424

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM AK  +M     +F+ MP++DVVS+ ++I G + +G   +A+ LF  +  EG+  D 
Sbjct: 425 VDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDV 484

Query: 433 VAFTIVLTACSHVGLV 448
           +  + +L ACS + L+
Sbjct: 485 MMISSILLACSGLKLI 500



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 232/474 (48%), Gaps = 16/474 (3%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P++     C+L A  L+K    + +  +VH   IK+G       VA+ I   ++    L+
Sbjct: 177 PLDACTFPCILKACGLLKD---RRYGAEVHGLAIKEGYVSI-VFVANSIVGMYTKCNDLN 232

Query: 88  YSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
            +  +F+R+      + WN+++  YS N + IE   +F  + +    P+ YTF   ++AC
Sbjct: 233 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 292

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
                +++G  IHA V++     +VFV  +LI +Y +  ++  A  +F  M + + +SW 
Sbjct: 293 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 352

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPER 262
           +M+ G+   G   EA   +  M +       V+  ++I    + G+     Q+     + 
Sbjct: 353 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN 412

Query: 263 NVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
            + S      +++D YAK   M     +F+  PD+DVV+W+ +I+G+AQNG    A+++F
Sbjct: 413 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 472

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            ++  + +  D  ++ S++ ACS +  +     + SY+ R    LS   +   +VD+  +
Sbjct: 473 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK--GLSDLVLQNGIVDVYGE 530

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CGN+D AA +FE +  +DVVS+ SMI     +G   +A+ LF  M   G+ PD ++   +
Sbjct: 531 CGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 590

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           L+A + +  ++ G +           V      + +VD+  R G L+ +  + N
Sbjct: 591 LSAAASLSALKKG-KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFN 643



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 20/214 (9%)

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFIL----VSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           + G  +EA +  +D+ + N  P +F L     S++  C     L     V +++  S+  
Sbjct: 52  KRGSVNEAFQSLTDLFA-NQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            +   +   LV M  KCG +  A +LF+ MP++ + ++ +MI     +G    ++ L+  
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV------- 475
           M   G+  D   F  +L AC   GL++D  R + A  +  AI    E Y  +V       
Sbjct: 171 MRVSGIPLDACTFPCILKAC---GLLKD--RRYGAEVHGLAI---KEGYVSIVFVANSIV 222

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            +  +   L  A +L + MP +    +W +++ A
Sbjct: 223 GMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/444 (40%), Positives = 267/444 (60%), Gaps = 47/444 (10%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA---------------- 213
           ++   TS++  Y K  ++  AR+ FDEMPER+VVSW AM   YA                
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 214 -------------------SVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLR 250
                              S+GD   A ++  ++ ++    ++    AL+    K G+L 
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 251 SARQLFDEM-PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
            AR +FDE+  +RN V++  MI  Y +VG ++ AR LF+  P RDVV+W+++I+GYAQNG
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 310 QPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           +   ++++F +M S  ++QPDE  + S++SAC  +G L LS WV   +   ++ L  +  
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISG- 429

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             +L+ M +KCG++  A  +F+TM  RDVVS+ ++I G + +GHG++A+ L   M  EG+
Sbjct: 430 FNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGI 489

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD V +  VLTACSH GL+ +G   F+++Q      P+ +HYACMVDLLGR G L  A 
Sbjct: 490 EPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAK 544

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
            L+ SMP++PHA  +G+LL A +++  + LGEL A++LFELEPQN G+YVLLSNIYA+  
Sbjct: 545 MLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFG 604

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW DV  VR  MK+ GL+K  G S
Sbjct: 605 RWEDVKRVREMMKKGGLKKSVGMS 628



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 212/431 (49%), Gaps = 70/431 (16%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
            L Q H H++   L   +  V+  +  C  L    +Y  ++F    +P+  +++ +LK Y
Sbjct: 16  QLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYY 75

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           S+     +V ++F         P  + +  +IK     L+ + G   HA V++ G  +D 
Sbjct: 76  SRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LAGKSGNLFHAYVLKLGHIDDH 130

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           F+  +++D+Y K  ++  AR                                +F+ M ER
Sbjct: 131 FIRNAILDMYAKNGQVDLAR-------------------------------NLFEQMAER 159

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           +   WN++I G  K G+   A  LF+ MP RN++++T+M+ GYAK+GD+ SAR  F+  P
Sbjct: 160 TLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMP 219

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           +R VV+W+A+ S YAQ   P EA+ +F  M  + + PD+   V  +S+CS +G+  L++ 
Sbjct: 220 ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADS 279

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD---------------------------- 383
           +   + + H+ L+ + V  AL+DM+AK GN++                            
Sbjct: 280 ILRMIDQKHIVLN-SFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRV 338

Query: 384 ----RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIV 438
                A ELF+ MP RDVVS+ SMI G + +G    ++ LF  M+S   + PDEV    V
Sbjct: 339 GKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASV 398

Query: 439 LTACSHVGLVE 449
           L+AC H+G ++
Sbjct: 399 LSACGHIGALK 409



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 61  IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120
           IK G+   +SL+  + S C S+A     +  +F  +   +   +NTL+ G++ N    E 
Sbjct: 423 IKLGISGFNSLIFMY-SKCGSVAD----AHRIFQTMGTRDVVSFNTLISGFAANGHGKEA 477

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180
             + + +  E   PD  T+  V+ ACSH   + EG  +  ++    VD        ++DL
Sbjct: 478 IKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHY----ACMVDL 533

Query: 181 YGKRKEISCARKVFDEMPER 200
            G+  E+  A+ +   MP +
Sbjct: 534 LGRAGELDEAKMLIQSMPMK 553


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 295/531 (55%), Gaps = 42/531 (7%)

Query: 83  ATPLSYSTA---VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           A P + S A   +F+ +  P   L +T L   S+ S   ++   F  + R+ A       
Sbjct: 14  APPATTSRAARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCV 73

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
           PLV K+C+   S  +G  +H   +  G+  DVFV T+L+D Y K  ++  A   FDEMP 
Sbjct: 74  PLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPV 133

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           ++ +    +I GY+  GD+ +A+ +FD M  R++ SWN++I      G+ R A  LFD M
Sbjct: 134 KDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRM 193

Query: 260 PE--------------------------------------RNVVSYTTMIDGYAKVGDMT 281
                                                   +NV+ +T +++ Y K   + 
Sbjct: 194 LSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAID 253

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            AR  F+    RDVVAWS +I+GYAQNG+P E++++F  M + + +P+E  LV ++SAC+
Sbjct: 254 DARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACA 313

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+G+ +L   + +Y     + L+ +++ +AL+DM  +CG++ RA  +F  M  + V+++ 
Sbjct: 314 QLGSDELVEQIGNYAENQRLPLT-SYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWN 372

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SMI+GL+++G    A+SL+++M   G+ P+E+ F  +L AC+H GLV+ G  FFE M+  
Sbjct: 373 SMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKRE 432

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           + + P  EH AC+VDLL ++G L  AY+ +  M VEP+A  W  LL +C+ ++D+EL +L
Sbjct: 433 HLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKL 492

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            + +L  +EP N+  YVLLSNIYA A  W D   +R  M+ + ++K+   S
Sbjct: 493 ASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYS 543


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 307/577 (53%), Gaps = 23/577 (3%)

Query: 8   NTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKG 64
           +  C H  C+  + +      ++  +P C+  A +L+  C     L    Q+HS+++K G
Sbjct: 220 HAQCGHGECALQIFD---EMQLSGLRPDCVTVA-SLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 65  LEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF 121
           +  D+      + L   C  + T    +  +FN     N  LWN +L  Y Q S   + F
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIET----AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331

Query: 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY 181
            IF ++      P+K+T+P +++ C+    +  G  IH+  I+ G + D++V   LID+Y
Sbjct: 332 EIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY 391

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWN 237
            K + +  ARK+ + + +R+VVSWT+MI GY       EA   F  M +      N+   
Sbjct: 392 SKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLA 451

Query: 238 ALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           +       I  +R   Q+   +       ++  + T+++ YA+ G    A SLF     +
Sbjct: 452 SAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHK 511

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D + W+ LISG+ Q+   ++A+ +F  M     + + F  +S +SA + + ++     V 
Sbjct: 512 DEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVH 571

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
               ++    S   V  AL+ +  KCG+++ A  +F  M  R+ VS+ ++I   S HG G
Sbjct: 572 GRAVKTG-HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRG 630

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A+ LFD+M  EGL P++V F  VL ACSHVGLVE+G  +F++M NVY + P P+HYAC
Sbjct: 631 LEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYAC 690

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           +VD+LGR G L  A   ++ MP+  +A  W  LL ACK++ +IE+GEL A  L ELEP +
Sbjct: 691 VVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHD 750

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + SYVLLSN YA   +W +   VR  MK+RG+RK PG
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPG 787



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 217/472 (45%), Gaps = 19/472 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+  + +GL  D  L+ + +   ++    +  +  VF  + + +   W  +L GY+Q 
Sbjct: 64  EIHATSVVRGLGADR-LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F ++ ++     +P  Y    V+ AC+      +G  IHA V +     + FVG
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD------LM 228
            +LI LY        A +VF +M   + V++  +I G+A  G    A  +FD      L 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSAR 284
           P+   V+  +L+     +GDL+  +QL   + +  +    ++  +++D Y K GD+ +A 
Sbjct: 243 PDCVTVA--SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F      +VV W+ ++  Y Q     ++ +IF  M +  + P++F    ++  C+  G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            ++L   + S   ++  + S  +V   L+DM +K   +D+A ++ E +  RDVVS+ SMI
Sbjct: 361 QIELGEQIHSLSIKNGFE-SDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMI 419

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G   H    +A++ F  M   G+ PD +      +AC+ +  +  G +   A   V   
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGY 478

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL---GACKLY 513
                 +  +V+L  R G  + A+ L   +  +   + W  L+   G  +LY
Sbjct: 479 AADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT-WNGLISGFGQSRLY 529



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 221/490 (45%), Gaps = 18/490 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L+   K KL      +H+ + K+    +  +    I+L     +    +  
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGS-FKLAER 200

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  ++  +   +NTL+ G++Q         IF  +      PD  T   ++ AC+ V  
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +++G  +H+ +++ G+  D     SL+DLY K  +I  A  +F+     NVV W  M+V 
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL----FDEMPERN 263
           Y  + DL ++  +F  M       +  ++  ++      G +    Q+         E +
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +     +ID Y+K   +  AR + E    RDVV+W+++I+GY Q+   +EA+  F +M  
Sbjct: 381 MYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDS--YLSRSHMDLSRAHVIAALVDMNAKCGN 381
             V PD   L S  SAC+ +  +     + +  Y+S    D+S   +   LV++ A+CG 
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS---IWNTLVNLYARCGR 497

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
            + A  LF  + ++D +++  +I G        QA+ +F +M   G   +   F   ++A
Sbjct: 498 SEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISA 557

Query: 442 CSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
            +++  ++ G +    A++  +      E    ++ L G+ G ++ A  + + M +    
Sbjct: 558 LANLADIKQGKQVHGRAVKTGH--TSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 501 SAWGALLGAC 510
           S W  ++ +C
Sbjct: 616 S-WNTIITSC 624



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 13/252 (5%)

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID YAK G +  AR +F+    RD V+W A++SGYAQ G   EA +++S M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
            ++L S++SAC++         + + + +     S   V  AL+ +    G+   A  +F
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAF-CSETFVGNALIALYLGFGSFKLAERVF 202

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M   D V++ ++I G +  GHG  A+ +FD M   GL PD V    +L AC+ VG ++
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 450 DGWRFFE-----AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            G +         M   Y    S      ++DL  + G +++A+++ N +    +   W 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGS------LLDLYVKCGDIETAHDIFN-LGDRTNVVLWN 315

Query: 505 ALLGACKLYSDI 516
            +L A    SD+
Sbjct: 316 LMLVAYGQISDL 327


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/444 (40%), Positives = 267/444 (60%), Gaps = 47/444 (10%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA---------------- 213
           ++   TS++  Y K  ++  AR+ FDEMPER+VVSW AM   YA                
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 214 -------------------SVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLR 250
                              S+GD   A ++  ++ ++    ++    AL+    K G+L 
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 251 SARQLFDEM-PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
            AR +FDE+  +RN V++  MI  Y +VG ++ AR LF+  P RDVV+W+++I+GYAQNG
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 310 QPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           +   ++++F +M S  ++QPDE  + S++SAC  +G L LS WV   +   ++ L  +  
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISG- 429

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             +L+ M +KCG++  A  +F+TM  RDVVS+ ++I G + +GHG++A+ L   M  EG+
Sbjct: 430 FNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGI 489

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD V +  VLTACSH GL+ +G   F+++Q      P+ +HYACMVDLLGR G L  A 
Sbjct: 490 EPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAK 544

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
            L+ SMP++PHA  +G+LL A +++  + LGEL A++LFELEPQN G+YVLLSNIYA+  
Sbjct: 545 MLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFG 604

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW DV  VR  MK+ GL+K  G S
Sbjct: 605 RWEDVKRVREMMKKGGLKKSVGMS 628



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 212/431 (49%), Gaps = 70/431 (16%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
            L Q H H++   L   +  V+  +  C  L    +Y  ++F    +P+  +++ +LK Y
Sbjct: 16  QLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYY 75

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           S+     +V ++F         P  + +  +IK     L+ + G   HA V++ G  +D 
Sbjct: 76  SRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LAGKSGNMFHAYVLKLGHIDDH 130

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           F+  +++D+Y K  ++  AR                                +F+ M ER
Sbjct: 131 FIRNAILDMYAKNGQVDLAR-------------------------------NLFEQMAER 159

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           +   WN++I G  K G+   A  LF+ MP RN++++T+M+ GYAK+GD+ SAR  F+  P
Sbjct: 160 TLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMP 219

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           +R VV+W+A+ S YAQ   P EA+ +F  M  + + PD+   V  +S+CS +G+  L++ 
Sbjct: 220 ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADS 279

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD---------------------------- 383
           +   + + H+ L+ + V  AL+DM+AK GN++                            
Sbjct: 280 ILRMIDQKHIVLN-SFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRV 338

Query: 384 ----RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIV 438
                A ELF+ MP RDVVS+ SMI G + +G    ++ LF  M+S   + PDEV    V
Sbjct: 339 GKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASV 398

Query: 439 LTACSHVGLVE 449
           L+AC H+G ++
Sbjct: 399 LSACGHIGALK 409



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 61  IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120
           IK G+   +SL+  + S C S+A     +  +F  +   +   +NTL+ G++ N    E 
Sbjct: 423 IKLGISGFNSLIFMY-SKCGSVAD----AHRIFQTMGTRDVVSFNTLISGFAANGHGKEA 477

Query: 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180
             + + +  E   PD  T+  V+ ACSH   + EG  +  ++    VD        ++DL
Sbjct: 478 IKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHY----ACMVDL 533

Query: 181 YGKRKEISCARKVFDEMPER 200
            G+  E+  A+ +   MP +
Sbjct: 534 LGRAGELDEAKMLIQSMPMK 553


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/611 (31%), Positives = 321/611 (52%), Gaps = 57/611 (9%)

Query: 11  CKHKSCSSMLPNCSRSAP--------INF-PKPSCLLSALTLIKKCKLQTHLHQVHSHII 61
           C  KSC ++   C   AP         +F   P    + + +  +C       ++ S I 
Sbjct: 143 CVMKSCGAL--GCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200

Query: 62  KKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF 121
           +  +   +S++A +  L       + ++   F  +   +   WN ++   SQ+ R  E  
Sbjct: 201 RPTIFCRNSMLAGYAKL-----YGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREAL 255

Query: 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY 181
            + V + R+    D  T+   + AC+ + S+  G  +HA VIR     D +V ++LI+LY
Sbjct: 256 GLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELY 315

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP------------ 229
            K      A++VF+ + +RN VSWT +I G        ++  +F+ M             
Sbjct: 316 AKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALA 375

Query: 230 ---------------------------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
                                       R+ V  N+LI    K GDL++A  +F  M ER
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 435

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           ++VS+T+MI  Y+++G++  AR  F+    R+ + W+A++  Y Q+G  ++ +K++S M 
Sbjct: 436 DIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAML 495

Query: 323 S-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
           S K+V PD    V+L   C+ +G   L + +  +  ++ + L+   V  A + M +KCG 
Sbjct: 496 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN-VSVANAAITMYSKCGR 554

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A +LF+ +  +DVVS+ +MI G S HG G+QA   FD MLS+G  PD +++  VL+ 
Sbjct: 555 ISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSG 614

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GLV++G  +F+ M  V+ I P  EH++CMVDLLGR GHL  A +L++ MP++P A 
Sbjct: 615 CSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAE 674

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALL ACK++ + EL EL A  +FEL+  ++GSY+LL+ IY+ A +  D   VR  M+
Sbjct: 675 VWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMR 734

Query: 562 ERGLRKIPGCS 572
           ++G++K PG S
Sbjct: 735 DKGIKKNPGYS 745



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 204/424 (48%), Gaps = 51/424 (12%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIK 144
           LS +  +F+R+   +   WNTL+ GY Q  RF++    FV + R  +++P+ +TF  V+K
Sbjct: 87  LSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMK 146

Query: 145 ACSHVLSVREGTAIHAAVIRWGVD--EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           +C   L  RE  A     + W  D   D  V T+L+D++ +   +  A ++F ++    +
Sbjct: 147 SCG-ALGCRE-LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
               +M+ GYA +  +  A   F+ M ER  VSWN +I  L + G +R A  L  EM  +
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 263 NV----VSYTT-----------------------------------MIDGYAKVGDMTSA 283
            V     +YT+                                   +I+ YAK G    A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F +  DR+ V+W+ LI G  Q     ++V++F+ M ++ +  D+F L +L+S C   
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            +L L   + S   +S  +  RA V++ +L+ + AKCG++  A  +F +M  RD+VS+ S
Sbjct: 385 MDLCLGRQLHSLCLKSGHN--RAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 442

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI   S  G+  +A   FD M     T + + +  +L A    G  EDG + + AM +  
Sbjct: 443 MITAYSQIGNIIKAREFFDGM----DTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 463 AIVP 466
            + P
Sbjct: 499 DVTP 502



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 42/356 (11%)

Query: 237 NALIGGLVKIGDLRSARQLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N L+      G L  AR+L   ++ E NV+++  M++GYAK G ++ A  LF+  P RDV
Sbjct: 43  NTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            +W+ L+SGY Q  +  + ++ F  M  S +  P+ F    +M +C  +G  +L+  +  
Sbjct: 103 ASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLG 162

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCG-------------------------------NMD 383
              +         V  ALVDM  +CG                                +D
Sbjct: 163 LFWKFDF-WGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGID 221

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A E FE M  RDVVS+  MI  LS  G  R+A+ L   M  +G+  D   +T  LTAC+
Sbjct: 222 HAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 281

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHY--ACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
              L   GW   +    V   +P  + Y  + +++L  + G  K A  + NS+  + ++ 
Sbjct: 282 R--LFSLGWG-KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSV 337

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           +W  L+G    Y        + N++   E      + L + I    +R +D+CL R
Sbjct: 338 SWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLISGCFNR-MDLCLGR 391


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 284/507 (56%), Gaps = 17/507 (3%)

Query: 80  HSLATPLSYSTAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           +S    ++++ ++F+   +  N F +N ++ G+  N    E F  + ++  E  +PDK+T
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           FP  IKAC  VL +++   IH  + ++G++ DVF+G++L++ Y K   +  A+  F+E+P
Sbjct: 62  FPCAIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI----GDLRSARQ 254
            R+VV W AM+ GYA +G        F  M + S V     + G++ +    GDL + R 
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRI 178

Query: 255 L----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +         +  V    ++ID Y K   +  A  +FE   ++D+ +W+++ S + Q G 
Sbjct: 179 IHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGD 238

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-----LSRSHMDLSR 365
            D  +++   M    +QPD   + +++ ACS +  L     +  Y     L +   D+  
Sbjct: 239 HDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDD 298

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             +  A++DM AKCG+M  A  +FE M N+DV S+  MI G  +HG+G +A+ +F RM  
Sbjct: 299 VLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 358

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
             L PDEV F  VL+ACSH G V  G  F   M++ Y + P+ EHY C++D+LGR G L 
Sbjct: 359 VQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLD 418

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            AYEL  +MP+E +   W ALL AC+L+    L E+ A R+FELEP++ GSYVL+SN+Y 
Sbjct: 419 EAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYG 478

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCS 572
              R+ +V  VR  M+++ +RK PGCS
Sbjct: 479 AVGRYEEVLEVRHTMRQQNVRKTPGCS 505



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 184/390 (47%), Gaps = 28/390 (7%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           IK C     + ++H  + K GLE D  + +  ++ C+     + ++   F  +   +  L
Sbjct: 66  IKACLDVLEIKKIHGLLFKFGLELDVFIGSALVN-CYLKFGLMEHAQVAFEELPIRDVVL 124

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++ GY+Q  +F  V   F R+  E  VP ++T   ++   + +  +  G  IH   +
Sbjct: 125 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAM 184

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------- 216
           + G D  V V  SLID+YGK K I  A ++F+ M E+++ SW ++   +   G       
Sbjct: 185 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLR 244

Query: 217 ------------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
                       DLV   TV       + +     I G + +  L    +  D++  +N 
Sbjct: 245 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNA 304

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V     ID YAK G M  A  +FE   ++DV +W+ +I GY  +G  +EA+++FS MC  
Sbjct: 305 V-----IDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 359

Query: 325 NVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
            ++PDE   V ++SACS  G +    N++    S+  +  +  H    ++DM  + G +D
Sbjct: 360 QLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHY-TCVIDMLGRAGQLD 418

Query: 384 RAAELFETMP-NRDVVSYCSMIKGLSIHGH 412
            A EL  TMP   + V + +++    +H H
Sbjct: 419 EAYELALTMPIEANPVVWRALLAACRLHKH 448



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 16/209 (7%)

Query: 37  LLSALTLIKKCK---LQTHLHQVHSHIIKKGLEQDHS-----LVAHFISLCHSLATPLSY 88
           L++  T++  C       H  ++H ++I  GL +D       L+ + +   ++    +  
Sbjct: 258 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD 317

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  VF R+ N +   WN ++ GY  +    E   +F R+   +  PD+ TF  V+ ACSH
Sbjct: 318 AHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 377

Query: 149 VLSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
              V +G    A +  ++ V   +   T +ID+ G+  ++  A ++   MP E N V W 
Sbjct: 378 AGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWR 437

Query: 207 AMIVG-----YASVGDLVEAKTVFDLMPE 230
           A++       +A + + V A+ VF+L PE
Sbjct: 438 ALLAACRLHKHAVLAE-VAAQRVFELEPE 465


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 210/649 (32%), Positives = 326/649 (50%), Gaps = 120/649 (18%)

Query: 42  TLIKKCKLQTHL---HQVHSHIIKKGL---EQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           +L+++C  +  +    Q+H+H I  GL      H L++  ++  +++     ++  +F+ 
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSS-LAAAYAMFGCAPHARKLFDE 81

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVRE 154
           + NP+ F WN +++ Y+ +    +   +FV+++      PD YT+P VIKAC   L    
Sbjct: 82  LRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IHA  +  G D D FV  SL+ +Y    E+  AR+VFD M ER +VSW  MI GY  
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 215 VGDLVEAKTVFDLM------PERSNV---------------------------------S 235
            G + EA  VFD M      P+ + V                                  
Sbjct: 202 NGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISV 261

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL-----FEAA 290
           WN+L+    K G++  A+ +F EM +R+VVS+TTM++GY   GD  SA  L     FE+ 
Sbjct: 262 WNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESV 321

Query: 291 P----------------------------------DRDVVAWSALISGYAQ--------- 307
                                              + +V+  +ALI  YA+         
Sbjct: 322 KPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFR 381

Query: 308 ----------------------NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
                                 NG   +A+++F  M  + V P++  L SL+ A + + +
Sbjct: 382 VFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTD 441

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSM 403
           L  +  +  YL RS   LSR  V   L+D+ +KCG+++ A  +F  +P  ++D++++ ++
Sbjct: 442 LQQARNMHGYLIRSGF-LSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAI 500

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G  +HGHG  A+SLFD+M+  G+ P+E+ FT +L ACSH GLV++G   F+ M     
Sbjct: 501 IAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQ 560

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           +    +HY C++DLLGR G L+ AYEL+ +M   P+ + WGALLG+C ++ ++ELGE+ A
Sbjct: 561 MSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAA 620

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             LFELEP N G+YVLL+NIY+   RW D   VR  M   GLRK P  S
Sbjct: 621 KWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHS 669


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/605 (32%), Positives = 318/605 (52%), Gaps = 73/605 (12%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L L  + + QT   ++H  I+K   + +  L  + I+  + L   L+Y+  VF+ I  
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGN-LAYAHHVFDHIPQ 68

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIF---------------------------VR----L 127
           PN F WNT+L  YS+     ++  IF                           VR    +
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 128 IREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           +++ A+  ++ TF  ++  CS    V  G  I+  ++++G   DVFVG+ L+D+Y K   
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGL 188

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           I  A++ FDEMPERNVV    MI G    G + E++ +F  + ER ++SW  +I GL++ 
Sbjct: 189 IYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQN 248

Query: 247 GDLRSARQLFDEMP---------------------------------------ERNVVSY 267
           G  R A  +F EM                                        + NV   
Sbjct: 249 GLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVG 308

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           + ++D Y+K   + SA ++F+  P ++V++W+A++ GY QNG  +EAVKIF +M    V+
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVE 368

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PD+F L S++S+C+ + +L+           S + +S   V  AL+ +  KCG+ + +  
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGL-ISFITVSNALITLYGKCGSTENSHR 427

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           LF  M  RD VS+ +++ G +  G   + + LF+RML+ GL PD V F  VL+ACS  GL
Sbjct: 428 LFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGL 487

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           VE G ++FE+M   + I+P  +H  C++DLLGR G L+ A   +N+MP  P    W  LL
Sbjct: 488 VEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            +C+++ D+E+G+  A+ L  LEPQN  SYVLLS++YA+  +W  V  +R  M+++ +RK
Sbjct: 548 SSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRK 607

Query: 568 IPGCS 572
            PG S
Sbjct: 608 EPGYS 612


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 174/439 (39%), Positives = 256/439 (58%), Gaps = 39/439 (8%)

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           +GTSL+ +Y K   +  +RKVFD MPERN V+W AMI GY   GD   A  +F+ M  R+
Sbjct: 2   IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
            V+W  +I G  + GD  +AR+ FD++P   RNVV++T M+DGYA+  +M +AR +FE  
Sbjct: 62  AVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGM 121

Query: 291 PDRDVVAWSA-------------------------------LISGYAQNGQPDEAVKIFS 319
           P R+  AWS+                               LISGYAQNG  +EA++ F 
Sbjct: 122 PQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFG 181

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M ++  +PDE  + S++SACSQ+G LD    +   ++   + L++  V+  LVDM AKC
Sbjct: 182 KMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQ-FVLNGLVDMYAKC 240

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G++  A  +FE M +R+   + SMI G +IHG  ++A+  F RM      PDE+ F  VL
Sbjct: 241 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 300

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +AC+H G V  G   F  M+  Y +    +HY C++DLLGR G +K AY+L+  MPV+P+
Sbjct: 301 SACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPN 359

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS----YVLLSNIYATADRWLDVCL 555
              WGALLGAC+++ D+E+ + V   + +++   +      YVLLSNIYA +DRW     
Sbjct: 360 DVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEK 419

Query: 556 VRSKMKERGLRKIPGCSSL 574
           +R +M  +G +K  GCSS+
Sbjct: 420 MRMEMANKGFQKTSGCSSI 438



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 160/349 (45%), Gaps = 56/349 (16%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           S  VF+ +   N   WN ++ GY  N        +F ++    AV    T+  +I   + 
Sbjct: 19  SRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAV----TWIEMIDGFA- 73

Query: 149 VLSVREGTAIHAAVIRWGVD-----EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
               R G    A   R+  D      +V   T ++D Y +  E+  AR+VF+ MP+RN  
Sbjct: 74  ----RSGDTETAR--RFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFF 127

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM---- 259
           +W++MI GY   G++ EA+++FD +P R+ V+WN+LI G  + G    A + F +M    
Sbjct: 128 AWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEG 187

Query: 260 --PER---------------------------------NVVSYTTMIDGYAKVGDMTSAR 284
             P+                                  N      ++D YAK GD+ +AR
Sbjct: 188 FEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANAR 247

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +FE    R+   W+++ISG+A +GQ  EA++ F  M   +  PDE   +S++SAC+  G
Sbjct: 248 LIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGG 307

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            ++    + S + +  +     H    L+D+  + G +  A +L + MP
Sbjct: 308 FVNAGLEIFSRMEKYGLTTGIKHY-GCLIDLLGRAGRIKEAYDLIKRMP 355



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 9/224 (4%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + ++F+RI   N   WN+L+ GY+QN    E    F ++  E   PD+ T   V+ ACS 
Sbjct: 145 ARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQ 204

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G  IH  +   G+  + FV   L+D+Y K  +++ AR +F+ M  RN   W +M
Sbjct: 205 LGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSM 264

Query: 209 IVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           I G+A  G   EA   F  M +       +++ +++      G + +  ++F  M +  +
Sbjct: 265 ISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGL 324

Query: 265 VS----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
            +    Y  +ID   + G +  A  L +  P + + V W AL+ 
Sbjct: 325 TTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLG 368



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 2/179 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    + S L+   +  L     ++H  +  KG++ +  ++   + + ++    L+ +  
Sbjct: 190 PDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDM-YAKCGDLANARL 248

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  + + N   WN+++ G++ + +  E    F R+      PD+ TF  V+ AC+H   
Sbjct: 249 IFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGF 308

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
           V  G  I + + ++G+   +     LIDL G+   I  A  +   MP + N V W A++
Sbjct: 309 VNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALL 367


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 307/557 (55%), Gaps = 26/557 (4%)

Query: 33  KPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPL 86
           KP C+  A +L+  C     L    Q HS+ IK G+  D  L    + L   C  + T  
Sbjct: 369 KPDCVTVA-SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAH 427

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
            +    F      N  LWN +L  Y       E F IF ++  E   P+++T+P +++ C
Sbjct: 428 EF----FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTC 483

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S + +V  G  IH  V++ G   +V+V + LID+Y K  ++  A K+F  + E++VVSWT
Sbjct: 484 SSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWT 543

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           AMI GYA      EA  +F  M ++     N+ + + I     I  L   +Q+     + 
Sbjct: 544 AMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIH---AQA 600

Query: 263 NVVSYT-------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            V  Y+        ++  YA+ G +  A   F+    +D ++W++LISG+AQ+G  +EA+
Sbjct: 601 CVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEAL 660

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
            +FS M     + + F     +SA + V N+ L   + + + ++  D S   V   L+ +
Sbjct: 661 SLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHD-SETEVSNVLITL 719

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            AKCGN+D A   F  MP ++ +S+ +M+ G S HGHG +A+SLF+ M   G+ P+ V F
Sbjct: 720 YAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTF 779

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             VL+ACSHVGLV++G ++F++M+ V+ +VP PEHYAC+VDLLGR+G L  A   +  MP
Sbjct: 780 VGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMP 839

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           ++P A     LL AC ++ +I++GE  A+ L ELEP+++ +YVLLSN+YA   +W     
Sbjct: 840 IQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDR 899

Query: 556 VRSKMKERGLRKIPGCS 572
            R  MK+RG++K PG S
Sbjct: 900 TRQMMKDRGVKKEPGRS 916



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 242/506 (47%), Gaps = 28/506 (5%)

Query: 18  SMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS 77
           ++L  C       +P P    S L+   K +      Q+H  ++K+G   +  +    ++
Sbjct: 255 AVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVT 314

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           L   L   +  +  VFN ++  +   +N+L+ G SQ     +   +F ++  +   PD  
Sbjct: 315 LYSRLGNFIP-AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCV 373

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T   ++ ACS V ++  G   H+  I+ G+  D+ +  +L+DLY K  +I  A + F   
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST 433

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSAR 253
              NVV W  M+V Y  + +L E+  +F  M     E +  ++ +++     +  +    
Sbjct: 434 ETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGE 493

Query: 254 QLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           Q+  ++ +     NV   + +ID YAK+G +  A  +F    ++DVV+W+A+I+GYAQ+ 
Sbjct: 494 QIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHE 553

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY--LSRSHMDLSRAH 367
           +  EA+ +F +M  + +  D     S +SAC+ +  L+    + +   +S    DLS   
Sbjct: 554 KFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLS--- 610

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  ALV + A+CG +  A   F+ + ++D +S+ S+I G +  GH  +A+SLF +M   G
Sbjct: 611 VGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAG 670

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA------CMVDLLGRT 481
              +   F   ++A ++V  V+ G       + ++A++    H +       ++ L  + 
Sbjct: 671 QEINSFTFGPAVSAAANVANVKLG-------KQIHAMIIKTGHDSETEVSNVLITLYAKC 723

Query: 482 GHLKSAYELLNSMPVEPHASAWGALL 507
           G++  A      MP E +  +W A+L
Sbjct: 724 GNIDDAERQFFEMP-EKNEISWNAML 748



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 234/508 (46%), Gaps = 50/508 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  I+K G   +  L    + L  +    L  +  VF+ +       WN +L  +   
Sbjct: 89  KLHGKILKMGFCAEVVLCERLMDLYIAFG-DLDGAVTVFDEMPVRPLSCWNKVLHRFVAG 147

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS------HVLSVREGTAIHAAVIRWGVD 168
                V  +F R+++E+  PD+ T+  V++ C       H +       IHA  I  G +
Sbjct: 148 KMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVE-----KIHARTITHGYE 202

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
             +FV   LIDLY K   ++ A+KVFD + +R+ VSW AM+ G +  G   EA  +F  M
Sbjct: 203 NSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM 262

Query: 229 PERSNVS-----WNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGD 279
              S V      +++++    K+   +   QL   + ++     T     ++  Y+++G+
Sbjct: 263 -HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
              A  +F A   RD V++++LISG +Q G  D+A+++F  MC   ++PD   + SL+SA
Sbjct: 322 FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           CS VG L +     SY  ++ M  S   +  AL+D+  KC ++  A E F +    +VV 
Sbjct: 382 CSSVGALLVGKQFHSYAIKAGMS-SDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVL 440

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLV 448
           +  M+    +  +  ++  +F +M  EG+ P++  +  +L  CS           H  ++
Sbjct: 441 WNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVL 500

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           + G++F     NVY         + ++D+  + G L  A ++   +  E    +W A++ 
Sbjct: 501 KTGFQF-----NVYV-------SSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIA 547

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGS 536
               Y+  E      N   E++ Q   S
Sbjct: 548 G---YAQHEKFAEALNLFKEMQDQGIHS 572



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 218/465 (46%), Gaps = 16/465 (3%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           + ++H+  I  G E    +    I L +     L+ +  VF+ +   ++  W  +L G S
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDL-YFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLS 247

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           Q+    E   +F ++      P  Y F  V+ AC+ V   + G  +H  V++ G   + +
Sbjct: 248 QSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETY 307

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM---- 228
           V  +L+ LY +      A +VF+ M +R+ VS+ ++I G +  G   +A  +F  M    
Sbjct: 308 VCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDC 367

Query: 229 --PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTS 282
             P+   V+  +L+     +G L   +Q      +     +++    ++D Y K  D+ +
Sbjct: 368 LKPDCVTVA--SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKT 425

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A   F +    +VV W+ ++  Y      +E+ KIF+ M  + ++P++F   S++  CS 
Sbjct: 426 AHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSS 485

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +  +DL   + + + ++    +  +V + L+DM AK G +D A ++F  +  +DVVS+ +
Sbjct: 486 LRAVDLGEQIHTQVLKTGFQFN-VYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTA 544

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G + H    +A++LF  M  +G+  D + F   ++AC+ +  +  G +   A   V 
Sbjct: 545 MIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ-IHAQACVS 603

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                      +V L  R G ++ AY   + +  + + S W +L+
Sbjct: 604 GYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS-WNSLI 647



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 189/407 (46%), Gaps = 21/407 (5%)

Query: 124 FVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
           F+ L+ E  V  +  T+  ++  C       +G  +H  +++ G   +V +   L+DLY 
Sbjct: 55  FLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI 114

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIG 241
              ++  A  VFDEMP R +  W  ++  + +         +F  ++ E+         G
Sbjct: 115 AFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAG 174

Query: 242 GLVKIGDLRSARQLFDEMPERNVV-SYTT-------MIDGYAKVGDMTSARSLFEAAPDR 293
            L   G         +++  R +   Y         +ID Y K G + SA+ +F+    R
Sbjct: 175 VLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKR 234

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D V+W A++SG +Q+G  +EAV +F  M +  V P  +I  S++SAC++V    +   + 
Sbjct: 235 DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH 294

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
             + +    L   +V  ALV + ++ GN   A ++F  M  RD VSY S+I GLS  G+ 
Sbjct: 295 GLVLKQGFSL-ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYS 353

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--- 470
            +A+ LF +M  + L PD V    +L+ACS VG +  G +F     + YAI         
Sbjct: 354 DKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQF-----HSYAIKAGMSSDII 408

Query: 471 -YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
               ++DL  +   +K+A+E   S   E +   W  +L A  L  ++
Sbjct: 409 LEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVAYGLLDNL 454


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/590 (33%), Positives = 320/590 (54%), Gaps = 78/590 (13%)

Query: 56  VHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNP---NTFLWNTLL 108
           +H  I   G E +    ++LVA + S C SL      ++ VF+ I      +   WN+++
Sbjct: 171 LHGLICCNGFESNVFVCNALVAMY-SRCGSLED----ASLVFDEITRKGIDDVISWNSIV 225

Query: 109 KGYSQNSR---FIEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAV 162
             + + S     +E+F+    ++ E+A     D  +   ++ AC+ + ++ +   IH+  
Sbjct: 226 AAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYA 285

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           IR G   D FV  +LID Y K   ++ A KVF+ M  ++VVSW AM+ GY   G+   A 
Sbjct: 286 IRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAF 345

Query: 223 TVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVS-------- 266
            +F+ M + +     ++W+A+I G  + G  + A   F +M     E N V+        
Sbjct: 346 ELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSAC 405

Query: 267 ---------------------------------------YTTMIDGYAKVGDMTSARSLF 287
                                                  Y  +ID Y+K     +ARS+F
Sbjct: 406 ASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIF 465

Query: 288 EAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQV 343
           ++ P  +R+VV W+ +I GYAQ G  ++A+KIFS+M SK   V P+ + +  ++ AC+ +
Sbjct: 466 DSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHL 525

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
             L +   + +Y++R H      + +A  L+DM +KCG++D A  +F++MP R+ VS+ S
Sbjct: 526 AALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTS 585

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           M+ G  +HG G++A+ +FD+M   G  PD+++F ++L ACSH G+V+ G  +F+ M+  Y
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDY 645

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            +V S EHYAC++DLL R G L  A++ +  MP+EP A  W ALL AC+++S++EL E  
Sbjct: 646 DVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYA 705

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            N+L  ++ +N GSY L+SNIYA A RW DV  +R  MK+ G++K PGCS
Sbjct: 706 LNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCS 755



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/554 (25%), Positives = 244/554 (44%), Gaps = 90/554 (16%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC----HSLATPLSYST------- 90
           +L+K+C+    + Q+H  II  GL    S +   + L     HS  +P S  T       
Sbjct: 36  SLLKECRSVNTVRQIHQKIIACGLLSYPSSLLS-VPLAPLPSHSYVSPKSLGTGVVASYL 94

Query: 91  ---------AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
                    +V  R+       WN L++ + +         +  R++R    PD +T P 
Sbjct: 95  ACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPY 154

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER- 200
            +KAC  + S   G A+H  +   G + +VFV  +L+ +Y +   +  A  VFDE+  + 
Sbjct: 155 ALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKG 214

Query: 201 --NVVSWTAMIVGYASVGDLVEAKTVFDLMP---------ERSNV--------------- 234
             +V+SW +++  +    +   A  +F  M          ERS++               
Sbjct: 215 IDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKA 274

Query: 235 ---------------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                  NALI    K G +  A ++F+ M  ++VVS+  M+ G
Sbjct: 275 LPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 274 YAKVGDMTSARSLFEAAPDR----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           Y + G+  +A  LFE         DV+ WSA+I+GYAQ G   EA+  F  M     +P+
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAH----------VIAALVDMNAK 378
              ++SL+SAC+ +G L     + +Y L +  + L              V  AL+DM +K
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 379 CGNMDRAAELFETMPNRD--VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVA 434
           C +   A  +F+++P R+  VV++  MI G + +G    A+ +F  M+S+   + P+   
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNS 493
            + +L AC+H+  +  G +    +   +   PS    A C++D+  + G + +A  + +S
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 494 MPVEPHASAWGALL 507
           MP     S W +++
Sbjct: 575 MPKRNEVS-WTSMM 587


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/536 (35%), Positives = 299/536 (55%), Gaps = 39/536 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNPN 100
           L + CK    L Q+H+ ++  GL  + S+V   I    SL+ P  L Y+  +F  I  P+
Sbjct: 18  LWQNCKNFRTLMQIHAFMVVNGLMSNLSVVGELI-YSASLSVPGALKYAHKLFEEIPKPD 76

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             + N +L+G +Q+ +  +   ++  + +    PD+YTF  V+KACS +     G AIH 
Sbjct: 77  VSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHG 136

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V+R G          L++ Y K                       A+I+ +A+ GDL  
Sbjct: 137 KVVRHGF---------LLNEYVK----------------------NALILFHANCGDLGI 165

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A  +FD   +   V+W+++  G  K G +  A +LFDEMP+++ V++  MI G  K  +M
Sbjct: 166 ASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREM 225

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            SAR LF+   ++DVV W+A+ISGY   G P EA+ IF +M      PD   ++SL+SAC
Sbjct: 226 DSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSAC 285

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA----ALVDMNAKCGNMDRAAELFETMPNRD 396
           + +G+L+    +  Y+  +    S  +V      AL+DM AKCG++DRA E+F  M +RD
Sbjct: 286 AVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRD 345

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           + ++ ++I GL++H H   +V +F+ M    + P+EV F  V+ ACSH G V++G ++F 
Sbjct: 346 LSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFS 404

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+++Y I P+ +HY CMVD+LGR G L+ A+  + SM +EP+A  W  LLGACK+Y ++
Sbjct: 405 LMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELG+    +L  +    +G YVLLSNIYA+  +W  V  VR    +  ++K  G S
Sbjct: 465 ELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGIS 520


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/611 (31%), Positives = 321/611 (52%), Gaps = 57/611 (9%)

Query: 11  CKHKSCSSMLPNCSRSAP--------INF-PKPSCLLSALTLIKKCKLQTHLHQVHSHII 61
           C  KSC ++   C   AP         +F   P    + + +  +C       ++ S I 
Sbjct: 143 CVMKSCGAL--GCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200

Query: 62  KKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF 121
           +  +   +S++A +  L       + ++   F  +   +   WN ++   SQ+ R  E  
Sbjct: 201 RPTIFCRNSMLAGYAKL-----YGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREAL 255

Query: 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY 181
            + V + R+    D  T+   + AC+ + S+  G  +HA VIR     D +V ++LI+LY
Sbjct: 256 GLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELY 315

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP------------ 229
            K      A++VF+ + +RN VSWT +I G        ++  +F+ M             
Sbjct: 316 AKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALA 375

Query: 230 ---------------------------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
                                       R+ V  N+LI    K GDL++A  +F  M ER
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 435

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           ++VS+T+MI  Y+++G++  AR  F+    R+ + W+A++  Y Q+G  ++ +K++S M 
Sbjct: 436 DIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAML 495

Query: 323 S-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
           S K+V PD    V+L   C+ +G   L + +  +  ++ + L+   V  A + M +KCG 
Sbjct: 496 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN-VSVANAAITMYSKCGR 554

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A +LF+ +  +DVVS+ +MI G S HG G+QA   FD MLS+G  PD +++  VL+ 
Sbjct: 555 ISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSG 614

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GLV++G  +F+ M  V+ I P  EH++CMVDLLGR GHL  A +L++ MP++P A 
Sbjct: 615 CSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAE 674

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALL ACK++ + EL EL A  +FEL+  ++GSY+LL+ IY+ A +  D   VR  M+
Sbjct: 675 VWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMR 734

Query: 562 ERGLRKIPGCS 572
           ++G++K PG S
Sbjct: 735 DKGIKKNPGYS 745



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 204/424 (48%), Gaps = 51/424 (12%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIK 144
           LS +  +F+R+   +   WNTL+ GY Q  RF++    FV + R  +++P+ +TF  V+K
Sbjct: 87  LSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMK 146

Query: 145 ACSHVLSVREGTAIHAAVIRWGVD--EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           +C   L  RE  A     + W  D   D  V T+L+D++ +   +  A ++F ++    +
Sbjct: 147 SCG-ALGCRE-LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
               +M+ GYA +  +  A   F+ M ER  VSWN +I  L + G +R A  L  EM  +
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 263 NV----VSYTT-----------------------------------MIDGYAKVGDMTSA 283
            V     +YT+                                   +I+ YAK G    A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F +  DR+ V+W+ LI G  Q     ++V++F+ M ++ +  D+F L +L+S C   
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            +L L   + S   +S  +  RA V++ +L+ + AKCG++  A  +F +M  RD+VS+ S
Sbjct: 385 MDLCLGRQLHSLCLKSGHN--RAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 442

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI   S  G+  +A   FD M     T + + +  +L A    G  EDG + + AM +  
Sbjct: 443 MITAYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 463 AIVP 466
            + P
Sbjct: 499 DVTP 502



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 42/356 (11%)

Query: 237 NALIGGLVKIGDLRSARQLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N L+   +  G L  AR+L   ++ E NV+++  M++GYAK G ++ A  LF+  P RDV
Sbjct: 43  NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            +W+ L+SGY Q  +  + ++ F  M  S +  P+ F    +M +C  +G  +L+  +  
Sbjct: 103 ASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLG 162

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCG-------------------------------NMD 383
              +         V  ALVDM  +CG                                +D
Sbjct: 163 LFWKFDF-WGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGID 221

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A E FE M  RDVVS+  MI  LS  G  R+A+ L   M  +G+  D   +T  LTAC+
Sbjct: 222 HAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA 281

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHY--ACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
              L   GW   +    V   +P  + Y  + +++L  + G  K A  + NS+  + ++ 
Sbjct: 282 R--LFSLGWG-KQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSV 337

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           +W  L+G    Y        + N++   E      + L + I    +R +D+CL R
Sbjct: 338 SWTVLIGGSLQYECFSKSVELFNQM-RAELMAIDQFALATLISGCFNR-MDLCLGR 391


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 160/389 (41%), Positives = 255/389 (65%), Gaps = 2/389 (0%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           ++ A KVF EM ++NV +WTA++  + +  D+V A+ +FDL P+   V WN ++ G +++
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIEL 69

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +AR+LFD MP+ +V+S+ T++ GYA  G++     +FE  P R+V +W+ LI GY 
Sbjct: 70  GDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYV 129

Query: 307 QNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           +NG   EA++ F  M    V  P+++ +V+++SACS++G+L++  WV  Y + S      
Sbjct: 130 RNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVY-ADSIGYKGN 188

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V  AL+DM AKCG +++A ++F+ +  +D++++ ++I  L++H H   A+SLF+ M  
Sbjct: 189 LFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKR 248

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
            G  PD V F  +L+AC+H+GLV +G+  F++M + Y IVP  EHY CMVDLLGR G + 
Sbjct: 249 AGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLIN 308

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            A +++  MP+EP    W ALLGAC+ Y ++E+ EL   RL ELEP N G++V+LSNIY 
Sbjct: 309 QAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYK 368

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCSSL 574
              R  DV  ++  M++ G RK+PGCS +
Sbjct: 369 DLGRSQDVARLKVAMRDTGFRKVPGCSVI 397



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 55/352 (15%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           DV +   ++  Y +  ++  AR++FD MP+ +V+SW  ++ GYA+ G++     VF+ MP
Sbjct: 55  DVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMP 114

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV---SYTT----------------- 269
            R+  SWN LIGG V+ G  + A + F  M    VV    YT                  
Sbjct: 115 ARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGK 174

Query: 270 --------------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
                               +ID YAK G +  A  +F+    +D++ W+ +I+  A + 
Sbjct: 175 WVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHX 234

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV-----GNLDLSNWVDSYLSRSHMDLS 364
              +A+ +F  M     +PD    V ++SAC+ +     G L   + VD YL    ++  
Sbjct: 235 HAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIE-- 292

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
             H    +VD+  + G +++A ++   MP   DVV + +++     + +   A     R+
Sbjct: 293 --H-YGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRL 349

Query: 424 LSEGLTPDEVA-FTIVLTACSHVGLVEDGWRFFEAMQNV-YAIVPSPEHYAC 473
           +   L P+    F ++      +G  +D  R   AM++  +  VP      C
Sbjct: 350 IE--LEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGC 399



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 16/258 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           VF  +   N + WN L+ GY +N  F E    F R++ +  V P+ YT   V+ ACS + 
Sbjct: 109 VFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLG 168

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +  G  +H      G   ++FVG +LID+Y K   I  A  VFD +  +++++W  +I 
Sbjct: 169 DLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIIN 228

Query: 211 GYASVGDLVEAKTVFDLMP---ERSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVV- 265
             A      +A ++F+ M    ER + V++  ++     +G +R+    F  M +  ++ 
Sbjct: 229 SLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIV 288

Query: 266 ----SYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG---YAQNGQPDEAVKI 317
                Y  M+D   + G +  A  +    P + DVV W+AL+     Y      + A++ 
Sbjct: 289 PQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQR 348

Query: 318 FSDMCSKNVQPDEFILVS 335
             ++   N  P  F+++S
Sbjct: 349 LIELEPNN--PGNFVMLS 364


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 308/596 (51%), Gaps = 80/596 (13%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q H+ I+K G + D  + A  I+  +S     + +  V   I +P  + +++L+   ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIA-SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F +   +F R+     +PD +  P + K C+ + + + G  IH      G+D D FV 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            S+  +Y +   +  ARKVFD M +++VV+ +A++  YA  G L E   +   M     E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVS------------------ 266
            + VSWN ++ G  + G  + A  +F ++      P++  VS                  
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 267 ---------------YTTMIDGYAKVGDMTSARSLF------------------------ 287
                           + MID Y K G +    SLF                        
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 288 -----------EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
                      E   + +VV+W+++I+G AQNG+  EA+++F +M    V+P+   + S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC  +  L        +  R H+ L   HV +AL+DM AKCG ++ +  +F  MP ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           +V + S++ G S+HG  ++ +S+F+ ++   L PD ++FT +L+AC  VGL ++GW++F+
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M   Y I P  EHY+CMV+LLGR G L+ AY+L+  MP EP +  WGALL +C+L +++
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +L E+ A +LF LEP+N G+YVLLSNIYA    W +V  +R+KM+  GL+K PGCS
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 186/592 (31%), Positives = 316/592 (53%), Gaps = 57/592 (9%)

Query: 36  CLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           C+    ++++KC+   +L    QVH+ ++  G++    L +  + + +     +  +  +
Sbjct: 9   CIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEV-YCQTGCVEDARRM 67

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+++   N F W  +++ Y     + E   +F  ++ E   PD + FP V KACS + + 
Sbjct: 68  FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 127

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           R G  ++  ++  G + +  V  S++D++ K   +  AR+ F+E+  ++V  W  M+ GY
Sbjct: 128 RVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY 187

Query: 213 ASVGDLVEAKTVFDLM------PER----------SNVSW-------------------- 236
            S G+  +A  VF  M      P            +N+S                     
Sbjct: 188 TSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSD 247

Query: 237 ----NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM--IDGYAKVGD----------M 280
               N+L+    K   +  AR+ F  + + ++VS+  M  + G+ + GD          M
Sbjct: 248 LLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRM 307

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A S+F     RDVV W+++IS  AQ+G+   A+ +  +M   NV+ +   +VS + AC
Sbjct: 308 HIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 367

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           S++  L     +  ++ R  +D     ++ +L+DM  +CG++ ++  +F+ MP RD+VS+
Sbjct: 368 SKLAALRQGKEIHQFIIRCGLDTCN-FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSW 426

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
             MI    +HG G  AV+LF +  + GL P+ + FT +L+ACSH GL+E+GW++F+ M+ 
Sbjct: 427 NVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKT 486

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            YA+ P+ E YACMVDLL R G      E +  MP EP+A+ WG+LLGAC+++ + +L E
Sbjct: 487 EYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAE 546

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             A  LFELEPQ++G+YVL++NIY+ A RW D   +R  MKERG+ K PGCS
Sbjct: 547 YAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCS 598


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 190/534 (35%), Positives = 290/534 (54%), Gaps = 68/534 (12%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
           C     L Q+H+ II  G  Q + L+   +S   +    L+ +  VF RI NP+T +WN 
Sbjct: 44  CDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN-AHKVFERIENPSTTVWNQ 102

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +++G+SQ+    ++  ++ R++  EA P+++T+  +I  C+    +REG  +H  V+  G
Sbjct: 103 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANG 162

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
              +VFV TSL                         V+  A+  GY  V           
Sbjct: 163 YCTNVFVRTSL-------------------------VNLYAIAGGYDGV----------- 186

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
                                  R AR++FDE+ +RN+VS+ +++ GY + GD+  AR +
Sbjct: 187 -----------------------RKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRI 223

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+  P+R+VV+W+ +I+G AQ G+  +A+ +F +M    V+ D+  LV+ +SAC+++G+L
Sbjct: 224 FDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDL 283

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            L  W+ SY+       ++  +++   +L+ M A CG +D+A ++F  M  R  +S+ SM
Sbjct: 284 KLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSM 343

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGL---TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
           I G +  GH  +A+ +F  M   G     PD + F  VL ACSH G V+ G  FFE M  
Sbjct: 344 ITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNK 403

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            + IVP  EHY CMVDLL R G L  A+ L  SMP++P+ + WGALLG C+++ + EL  
Sbjct: 404 KWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELAS 463

Query: 521 LVANRL-FELEP-QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            VA +L  EL+P Q AG  VLLSN+YATA RW DV LVR KM E G+RK  G S
Sbjct: 464 HVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRS 517


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 304/572 (53%), Gaps = 57/572 (9%)

Query: 48  KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           K ++   Q+H+ ++K   +         +   +S    L  S  +FN I  P    W ++
Sbjct: 20  KSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSV 77

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           ++ Y+ +    +    F+ ++     PD   FP V+K+C+ ++ +  G ++H  +IR G+
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 168 DEDVFVGTSLIDLYGK--------RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           D D++ G +L+++Y K        R+ +  A +VFDEM ER     T  ++   SV    
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLG-AGEVFDEMTERTRSVRTVSVLSEDSV---- 192

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SYT--------- 268
             + +F++MPE+  VSWN +I G  + G      ++  EM   N+   S+T         
Sbjct: 193 --RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 269 ----------------------------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
                                       ++ID YAK   +  +  +F    +RD ++W++
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +I+G  QNG  DE ++ F  M    ++P  +   S+M AC+ +  L L   +  Y++R+ 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG 370

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
            D     + ++LVDM AKCGN+  A ++F+ M  RD+VS+ +MI G ++HG    A+ LF
Sbjct: 371 FD-ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELF 429

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           ++M +EG+ P+ VAF  VLTACSH GLV++ W++F +M   + I P  EHYA + DLLGR
Sbjct: 430 EQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGR 489

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L+ AY+ +  M + P  S W  LL AC+++ +I++ E VANR+ E++P N G+Y+LL
Sbjct: 490 AGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILL 549

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +NIY+ A RW +    R+ M+  G+RK P CS
Sbjct: 550 ANIYSAARRWKEAAKWRASMRRIGIRKTPACS 581



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 157/325 (48%), Gaps = 34/325 (10%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L S L LI +    +   ++H   I++GL+ D  + +  I + ++  T ++ S  
Sbjct: 237 PDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDM-YAKCTRVADSCR 295

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   +   WN+++ G  QN  F E    F +++  +  P  Y+F  ++ AC+H+ +
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  + R G DE++F+ +SL+D+Y K   I  A+++FD M  R++VSWTAMI+G
Sbjct: 356 LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMG 415

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
            A  G   +A  +F+ M       ++V++ A++      G +  A + F+ M     ++ 
Sbjct: 416 CALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIA- 474

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
              ++ YA V D+                          + G+ +EA   +  +C  ++ 
Sbjct: 475 -PGVEHYAAVSDL------------------------LGRAGRLEEA---YDFICGMHIG 506

Query: 328 PDEFILVSLMSACSQVGNLDLSNWV 352
           P   I  +L+SAC    N+D++  V
Sbjct: 507 PTGSIWATLLSACRVHXNIDMAEKV 531


>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 515

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/425 (39%), Positives = 268/425 (63%), Gaps = 3/425 (0%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++L+  CK   HLHQ+ SHII  GL+ +  +    I+   +L   + ++  +F++I  PN
Sbjct: 70  ISLLYSCKTLNHLHQIQSHIINHGLQFNDYITPKIIT-SFALFKRMRHAHKLFDQIPEPN 128

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
              WN +LKGYS N    EV  +F ++I  + +P+ ++FP+VIK+   + + +EG  +H 
Sbjct: 129 VSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHC 188

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            VI+ G   + FVGT LIDLY   + I  A +VF EM ERNVV+WT+MI G+    D+  
Sbjct: 189 FVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIET 248

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A+ +F+L P+R  V WN +I G + IGDL  A++LF +MP ++V+S+ T+++GYA  GD+
Sbjct: 249 ARRLFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWNTLLNGYANGGDI 308

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSA 339
            +   LFE  P+R+V +W+ LI GYA +G   E +  F  M     V P++  LV+++SA
Sbjct: 309 EACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSA 368

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+++G LDL  WV  Y ++S+      ++  AL+DM AKCGN++ A  +F+++  +D++S
Sbjct: 369 CARLGALDLGKWVHMY-AQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLIS 427

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + ++I GL++HG    A+ LF RM   G  PD + F  VL AC+H+GLV+DG+ +F++M 
Sbjct: 428 WNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHMGLVDDGFSYFQSMT 487

Query: 460 NVYAI 464
            V ++
Sbjct: 488 TVSSL 492


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 247/386 (63%), Gaps = 5/386 (1%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR++F  MP R+VVSW  M+ G +  G + EAK VF  MP R++VSWNA++ G     D+
Sbjct: 148 ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 207

Query: 250 RSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
            +A + F   PE+ + V +T M+ GY  +G++  A   FEA P R++V+W+A+++GY +N
Sbjct: 208 SAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKN 267

Query: 309 GQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
              D+A+++F  M  + NVQP+   L S++  CS +  L     +  +  +  + LSR  
Sbjct: 268 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK--LPLSRNL 325

Query: 368 VIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  +LV M  KCG++  A +LF  M  RDVV++ +MI G + HG G++A++LF+RM  E
Sbjct: 326 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 385

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G+ P+ + F  VLTAC H GL + G R FE MQ +Y I P  +HY+CMVDLL R G L+ 
Sbjct: 386 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 445

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A +L+ SMP EPH SA+G LL AC++Y ++E  EL A +L E +PQ+AG+YV L+NIYA 
Sbjct: 446 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAG 505

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
           A++W DV  VR  MK+  + K PG S
Sbjct: 506 ANQWDDVSRVRRWMKDNAVVKTPGYS 531



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 160/349 (45%), Gaps = 61/349 (17%)

Query: 92  VFNRIVNPNTFLWNTLL-----KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           +F+RI  P+   +NTLL      G +  +R         RL     V D  ++  ++   
Sbjct: 120 LFDRIPTPDAVSYNTLLSCHFASGDADGAR---------RLFASMPVRDVVSWNTMVSGL 170

Query: 147 SHVLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVS 204
           S   +V E  A+  A+ +R  V  +     +++  +   +++S A + F   PE+ + V 
Sbjct: 171 SKSGAVEEAKAVFLAMPVRNSVSWN-----AMVSGFACSRDMSAAEEWFRNAPEKGDAVL 225

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--- 261
           WTAM+ GY  +G++V+A   F+ MP R+ VSWNA++ G VK      A +LF  M     
Sbjct: 226 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 285

Query: 262 -------------------------------------RNVVSYTTMIDGYAKVGDMTSAR 284
                                                RN+   T+++  Y K GD++SA 
Sbjct: 286 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 345

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LF     RDVVAW+A+ISGYAQ+G   EA+ +F  M  + V+P+    V++++AC   G
Sbjct: 346 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 405

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             D        +   +    R    + +VD+  + G ++RA +L  +MP
Sbjct: 406 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 454



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 133/309 (43%), Gaps = 43/309 (13%)

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV---------------------- 277
           +   V+ GDL  A + F   P +   +Y  ++ GYA+                       
Sbjct: 73  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 132

Query: 278 ----------GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
                     GD   AR LF + P RDVV+W+ ++SG +++G  +EA  +F  M  +N  
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 192

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
               ++     ACS+    D+S   + +  R+  +   A +  A+V      GN+ +A E
Sbjct: 193 SWNAMVSGF--ACSR----DMSAAEEWF--RNAPEKGDAVLWTAMVSGYMDIGNVVKAIE 244

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVG 446
            FE MP R++VS+ +++ G   + H   A+ LF  M+ E  + P+    + VL  CS++ 
Sbjct: 245 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 304

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            +  G +  +    +  +  +      +V +  + G L SA +L   M       AW A+
Sbjct: 305 ALGFGKQIHQWCMKL-PLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAM 362

Query: 507 LGACKLYSD 515
           +     + D
Sbjct: 363 ISGYAQHGD 371



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 120/286 (41%), Gaps = 31/286 (10%)

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYA-----KVGDMTSARSLFEAAPDRDVVAWSALIS 303
           LR   +L    P  +  S+T  +   A     + GD+T A   F + P +    ++ L++
Sbjct: 46  LRYPSRLLAPTPLASARSHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLA 105

Query: 304 GYAQN-GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           GYA+  G+  +A  +F  + +    PD     +L+S     G+ D +        R    
Sbjct: 106 GYARALGRLADARHLFDRIPT----PDAVSYNTLLSCHFASGDADGAR-------RLFAS 154

Query: 363 LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           +    V++   +V   +K G ++ A  +F  MP R+ VS+ +M+ G +       A   F
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWF 214

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
                +G   D V +T +++    +G V     +FEAM      V +   +  +V    +
Sbjct: 215 RNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMP-----VRNLVSWNAVVAGYVK 266

Query: 481 TGHLKSAYELLNSM----PVEPHASAWGALLGACKLYSDIELGELV 522
             H   A  L  +M     V+P+AS   ++L  C   S +  G+ +
Sbjct: 267 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI 312


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 180/489 (36%), Positives = 279/489 (57%), Gaps = 10/489 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  + + +T  WN++L G+ QN  + E    +  +      PD      +I A +   +
Sbjct: 375 IFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGN 434

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              G  IHA  ++ G+D D+ VG SL+D+Y K   +     +FD+MP+++VVSWT +I G
Sbjct: 435 TLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAG 494

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALI--------GGLVKIGDLRSARQLFDEMPERN 263
           +A  G    A  +F  + +   +  + ++         GL  I  ++            +
Sbjct: 495 HAQNGSHSRALELFREV-QLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSD 553

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +V    ++D Y + G++  A  +FE    +DVV+W+++IS Y  NG  +EA+++F  M  
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 613

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             V+PD   LVS++SA + +  L     +  +L R    L    + + LVDM A+CG ++
Sbjct: 614 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL-EGSLASTLVDMYARCGTLE 672

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           ++  +F  + N+D+V + SMI    +HG GR A+ LF RM  E + PD +AF  VL ACS
Sbjct: 673 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+ +G RF E+M+  Y + P PEHY C+VDLLGR  HL+ AY+ +  M VEP A  W
Sbjct: 733 HSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 792

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLGAC+++S+ ELGE+ A +L E++P+N G+YVL+SN+YA   RW DV  VR +MK  
Sbjct: 793 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKAS 852

Query: 564 GLRKIPGCS 572
           GL+K PGCS
Sbjct: 853 GLKKNPGCS 861



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 219/436 (50%), Gaps = 14/436 (3%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA 83
           +  +P  F       S L L    K  +   QVH+H+I      +   ++  +   +   
Sbjct: 104 ANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKC 163

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLV 142
             L  +  +F+ + +   F WN ++  Y  N   +    ++ R +R   +P D  TFP +
Sbjct: 164 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY-REMRVSGIPLDACTFPCI 222

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-N 201
           +KAC  +   R G  +H   I+ G    VFV  S++ +Y K  +++ AR++FD MPE+ +
Sbjct: 223 LKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 282

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN--ALIGGLVKIGDLRSARQ----- 254
           VVSW +MI  Y+S G  +EA  +F  M ++++++ N    +  L    D    +Q     
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQGMFIH 341

Query: 255 --LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
             +       NV     +I  YA+ G M  A ++F    D D ++W++++SG+ QNG   
Sbjct: 342 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 401

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA++ + +M     +PD   ++S+++A ++ GN      + +Y  ++ +D S   V  +L
Sbjct: 402 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD-SDLQVGNSL 460

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM AK  +M     +F+ MP++DVVS+ ++I G + +G   +A+ LF  +  EG+  D 
Sbjct: 461 VDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDV 520

Query: 433 VAFTIVLTACSHVGLV 448
           +  + +L ACS + L+
Sbjct: 521 MMISSILLACSGLKLI 536



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 232/474 (48%), Gaps = 16/474 (3%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P++     C+L A  L+K  +      +VH   IK+G       VA+ I   ++    L+
Sbjct: 213 PLDACTFPCILKACGLLKDRRCGA---EVHGLAIKEGYVSI-VFVANSIVGMYTKCNDLN 268

Query: 88  YSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
            +  +F+R+      + WN+++  YS N + IE   +F  + +    P+ YTF   ++AC
Sbjct: 269 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
                +++G  IHA V++     +VFV  +LI +Y +  ++  A  +F  M + + +SW 
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 388

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPER 262
           +M+ G+   G   EA   +  M +       V+  ++I    + G+  +  Q+     + 
Sbjct: 389 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN 448

Query: 263 NVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
            + S      +++D YAK   M     +F+  PD+DVV+W+ +I+G+AQNG    A+++F
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            ++  + +  D  ++ S++ ACS +  +     + SY+ R    LS   +   +VD+  +
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK--GLSDLVLQNGIVDVYGE 566

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CGN+D AA +FE +  +DVVS+ SMI     +G   +A+ LF  M   G+ PD ++   +
Sbjct: 567 CGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 626

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           L+A + +  ++ G +           V      + +VD+  R G L+ +  + N
Sbjct: 627 LSAAASLSALKKG-KEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFN 679



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 22/215 (10%)

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFIL----VSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           + G  +EA +  +D+ + N  P +F L     S++  C     L     V +++  S+  
Sbjct: 88  KRGSVNEAFQSLTDLFA-NQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            +   +   LV M  KCG +  A +LF+ MP++ + ++ +MI     +G    ++ L+  
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVED--------GWRFFEAMQNVYAIVPSPEHYACM 474
           M   G+  D   F  +L AC   GL++D        G    E   ++  +  S      +
Sbjct: 207 MRVSGIPLDACTFPCILKAC---GLLKDRRCGAEVHGLAIKEGYVSIVFVANS------I 257

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           V +  +   L  A +L + MP +    +W +++ A
Sbjct: 258 VGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 289/529 (54%), Gaps = 16/529 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           Q+HS++ K G+  D+ +    + L   C  + T L     +FN     N  LWN +L  +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL----VIFNSSDRTNVVLWNLMLVAF 320

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            Q +   + F +F ++      P+++T+P +++ C+    +  G  IH+  ++ G + D+
Sbjct: 321 GQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDM 380

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE- 230
           +V   LID+Y K   +  AR+V + + E++VVSWT+MI GY       +A   F  M + 
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 231 ---RSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSA 283
                N+   + I G   I  +R   Q+   +       +V  +  +++ YA+ G +  A
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            S FE    +D + W+ L+SG+AQ+G  +EA+K+F  M    V+ + F  VS +SA + +
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             +     + + + ++        V  AL+ +  KCG+ + A   F  M  R+ VS+ ++
Sbjct: 561 AEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTI 619

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I   S HG G +A+ LFD+M  EG+ P++V F  VL ACSHVGLVE+G  +F++M + Y 
Sbjct: 620 ITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYG 679

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P P+HYAC++D+ GR G L  A + +  MP+   A  W  LL ACK++ +IE+GE  A
Sbjct: 680 IRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAA 739

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             L ELEP ++ SYVLLSN YA  ++W +   VR  M++RG+RK PG S
Sbjct: 740 KHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRS 788



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 210/442 (47%), Gaps = 11/442 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+  + +GL + + +V + +   +S    +  +  VF  +   +   W  +L GY+QN
Sbjct: 63  EIHAKAVTRGLGK-YRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   ++ ++ R   VP  Y    V+ +C+      +G  IHA   + G   ++FVG
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            ++I LY +      A +VF +MP R+ V++  +I G+A  G    A  +F+ M      
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 231 RSNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
              V+ ++L+     +GDL+   Q    LF      + +   +++D Y K GD+ +A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F ++   +VV W+ ++  + Q     ++ ++F  M +  ++P++F    ++  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           DL   + S   ++  + S  +V   L+DM +K G +++A  + E +  +DVVS+ SMI G
Sbjct: 362 DLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              H   + A++ F  M   G+ PD +     ++ C+ +  +  G +   A   V     
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSG 479

Query: 467 SPEHYACMVDLLGRTGHLKSAY 488
               +  +V+L  R G ++ A+
Sbjct: 480 DVSIWNALVNLYARCGRIREAF 501


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 289/529 (54%), Gaps = 16/529 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           Q+HS++ K G+  D+ +    + L   C  + T L     +FN     N  LWN +L  +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL----VIFNSSDRTNVVLWNLMLVAF 320

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            Q +   + F +F ++      P+++T+P +++ C+    +  G  IH+  ++ G + D+
Sbjct: 321 GQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDM 380

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE- 230
           +V   LID+Y K   +  AR+V + + E++VVSWT+MI GY       +A   F  M + 
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 231 ---RSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSA 283
                N+   + I G   I  +R   Q+   +       +V  +  +++ YA+ G +  A
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            S FE    +D + W+ L+SG+AQ+G  +EA+K+F  M    V+ + F  VS +SA + +
Sbjct: 501 FSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             +     + + + ++        V  AL+ +  KCG+ + A   F  M  R+ VS+ ++
Sbjct: 561 AEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTI 619

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I   S HG G +A+ LFD+M  EG+ P++V F  VL ACSHVGLVE+G  +F++M + Y 
Sbjct: 620 ITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYG 679

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P P+HYAC++D+ GR G L  A + +  MP+   A  W  LL ACK++ +IE+GE  A
Sbjct: 680 IRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAA 739

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             L ELEP ++ SYVLLSN YA  ++W +   VR  M++RG+RK PG S
Sbjct: 740 KHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRS 788



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 210/442 (47%), Gaps = 11/442 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+  + +GL + + +V + +   +S    +  +  VF  +   +   W  +L GY+QN
Sbjct: 63  EIHAKAVTRGLGK-YRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   ++ ++ R   VP  Y    V+ +C+      +G  IHA   + G   ++FVG
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            ++I LY +      A +VF +MP R+ V++  +I G+A  G    A  +F+ M      
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 231 RSNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
              V+ ++L+     +GDL+   Q    LF      + +   +++D Y K GD+ +A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F ++   +VV W+ ++  + Q     ++ ++F  M +  ++P++F    ++  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           DL   + S   ++  + S  +V   L+DM +K G +++A  + E +  +DVVS+ SMI G
Sbjct: 362 DLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              H   + A++ F  M   G+ PD +     ++ C+ +  +  G +   A   V     
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSG 479

Query: 467 SPEHYACMVDLLGRTGHLKSAY 488
               +  +V+L  R G ++ A+
Sbjct: 480 DVSIWNALVNLYARCGRIREAF 501


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 291/527 (55%), Gaps = 41/527 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + ++   F  +   +   WN ++   SQ+ R  E   + V + R+    D  T+   + A
Sbjct: 210 IDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTA 269

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + S+  G  +HA VIR     D +V ++LI+LY K      A++VF+ + +RN VSW
Sbjct: 270 CARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSW 329

Query: 206 TAMIVGYASVGDLVEAKTVFDLMP------------------------------------ 229
           T +I G        ++  +F+ M                                     
Sbjct: 330 TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLK 389

Query: 230 ---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
               R+ V  N+LI    K GDL++A  +F  M ER++VS+T+MI  Y+++G++  AR  
Sbjct: 390 SGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREF 449

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGN 345
           F+    R+ + W+A++  Y Q+G  ++ +K++S M S K+V PD    V+L   C+ +G 
Sbjct: 450 FDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGA 509

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
             L + +  +  ++ + L+   V  A + M +KCG +  A +LF+ +  +DVVS+ +MI 
Sbjct: 510 NKLGDQIIGHTVKAGLILN-VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMIT 568

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G S HG G+QA   FD MLS+G  PD +++  VL+ CSH GLV++G  +F+ M  V+ I 
Sbjct: 569 GYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGIS 628

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH++CMVDLLGR GHL  A +L++ MP++P A  WGALL ACK++ + EL EL A  
Sbjct: 629 PGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKH 688

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +FEL+  ++GSY+LL+ IY+ A +  D   VR  M+++G++K PG S
Sbjct: 689 VFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYS 735



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 214/447 (47%), Gaps = 43/447 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ +I+   + D  + +  I L ++       +  VFN + + N+  W  L+ G  Q 
Sbjct: 281 QLHAKVIRSLPQIDPYVASALIEL-YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQY 339

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F +   +F ++  E    D++    +I  C + + +  G  +H+  ++ G +  + V 
Sbjct: 340 ECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVS 399

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SLI LY K  ++  A  VF  M ER++VSWT+MI  Y+ +G++++A+  FD M  R+ +
Sbjct: 400 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAI 459

Query: 235 SWNALIGGLVKIGDLRSARQLFDEM-PERNV----VSYTTMIDG---------------- 273
           +WNA++G  ++ G      +++  M  +++V    V+Y T+  G                
Sbjct: 460 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 519

Query: 274 -------------------YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
                              Y+K G ++ A+ LF+    +DVV+W+A+I+GY+Q+G   +A
Sbjct: 520 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 579

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
            K F DM SK  +PD    V+++S CS  G +         ++R H         + +VD
Sbjct: 580 AKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVD 639

Query: 375 MNAKCGNMDRAAELFETMPNRDVVS-YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           +  + G++  A +L + MP +     + +++    IHG+   A  L  + + E  +PD  
Sbjct: 640 LLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELA-ELAAKHVFELDSPDSG 698

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQN 460
           ++ ++    S  G  +D  +  + M++
Sbjct: 699 SYMLLAKIYSDAGKSDDSAQVRKLMRD 725



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 185/418 (44%), Gaps = 54/418 (12%)

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-----DKYTFPLVIKACSHVL 150
           I  PN    N ++ GY++     +   +F R+ R +           + P         L
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGAL 141

Query: 151 SVREGTAIHAAVIRWGVD--EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             RE  A     + W  D   D  V T+L+D++ +   +  A ++F ++    +    +M
Sbjct: 142 GCRE-LAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSM 200

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV---- 264
           + GYA +  +  A   F+ M ER  VSWN +I  L + G +R A  L  EM  + V    
Sbjct: 201 LAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDS 260

Query: 265 VSYTT-----------------------------------MIDGYAKVGDMTSARSLFEA 289
            +YT+                                   +I+ YAK G    A+ +F +
Sbjct: 261 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 320

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
             DR+ V+W+ LI G  Q     ++V++F+ M ++ +  D+F L +L+S C    +L L 
Sbjct: 321 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 380

Query: 350 NWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
             + S   +S  +  RA V++ +L+ + AKCG++  A  +F +M  RD+VS+ SMI   S
Sbjct: 381 RQLHSLCLKSGHN--RAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYS 438

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
             G+  +A   FD M     T + + +  +L A    G  EDG + + AM +   + P
Sbjct: 439 QIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 492



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 204/435 (46%), Gaps = 62/435 (14%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD-EMPERN 201
           +++C    ++    A+H  ++  G+   VF+  +L+  Y     +S AR++   ++ E N
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN------------------------ 237
           V++   M+ GYA  G L +A+ +FD MP R   SWN                        
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146

Query: 238 ---------------------ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                                AL+   V+ G +  A +LF ++    +    +M+ GYAK
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           +  +  A   FE   +RDVV+W+ +I+  +Q+G+  EA+ +  +M  K V+ D     S 
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           ++AC+++ +L     + + + RS   +   +V +AL+++ AKCG+   A  +F ++ +R+
Sbjct: 267 LTACARLFSLGWGKQLHAKVIRSLPQID-PYVASALIELYAKCGSFKEAKRVFNSLQDRN 325

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF-- 454
            VS+  +I G   +    ++V LF++M +E +  D+ A   +++ C +   +  G +   
Sbjct: 326 SVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHS 385

Query: 455 --FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
              ++  N   +V +      ++ L  + G L++A  + +SM  E    +W +++ A   
Sbjct: 386 LCLKSGHNRAIVVSNS-----LISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMITA--- 436

Query: 513 YSDIELGELVANRLF 527
           YS I  G ++  R F
Sbjct: 437 YSQI--GNIIKAREF 449



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 24/334 (7%)

Query: 237 NALIGGLVKIGDLRSARQLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N L+   +  G L  AR+L   ++ E NV+++  M++GYAK G ++ A  LF+  P RDV
Sbjct: 59  NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118

Query: 296 VAWSALISGYAQN----------GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            +W+ L+S  ++           G  + A ++       +   D  +  +L+    + G 
Sbjct: 119 ASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGY 178

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           +D ++ + S + R  +   R  ++A      AK   +D A E FE M  RDVVS+  MI 
Sbjct: 179 VDFASRLFSQIERPTI-FCRNSMLAGY----AKLYGIDHAIEYFEDMAERDVVSWNMMIA 233

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
            LS  G  R+A+ L   M  +G+  D   +T  LTAC+   L   GW   +    V   +
Sbjct: 234 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR--LFSLGWG-KQLHAKVIRSL 290

Query: 466 PSPEHY--ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           P  + Y  + +++L  + G  K A  + NS+  + ++ +W  L+G    Y        + 
Sbjct: 291 PQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELF 349

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           N++   E      + L + I    +R +D+CL R
Sbjct: 350 NQM-RAELMAIDQFALATLISGCFNR-MDLCLGR 381


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 300/554 (54%), Gaps = 41/554 (7%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P      SAL +    + +    QVHS +I  G + D + V + +   ++          
Sbjct: 173 PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD-TFVGNALIDMYAKCDDEESCLK 231

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKACSHV 149
           VF+ +   N   WN+++   +Q   F +   +F+R+   E    PD++TF  ++  C++ 
Sbjct: 232 VFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQ 291

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            +  +G  IHA +IR  + +++ V T L+ +Y +   ++ A+++F+ M ERN  SW +MI
Sbjct: 292 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 351

Query: 210 VGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFD-----EMP 260
            GY   G+  EA  +F  M     +    S ++++   V + D +  R+L +      M 
Sbjct: 352 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 411

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAA--PDRDVVAWSALISGYAQNGQPDEAVKIF 318
           E  ++    ++D YAK G M  A  +++     DR+   W+++++GYA  G   E+   F
Sbjct: 412 EEGILQ-VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHF 470

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M   +++ D   +V++++                             +  ALVDM +K
Sbjct: 471 LEMLESDIEYDVLTMVTIVNLLV--------------------------LETALVDMYSK 504

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG + +A  +F+ M  +++VS+ +MI G S HG  ++A+ L++ M  +G+ P+EV F  +
Sbjct: 505 CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 564

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           L+ACSH GLVE+G R F +MQ  Y I    EHY CMVDLLGR G L+ A E +  MP+EP
Sbjct: 565 LSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEP 624

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
             S WGALLGAC+++ D+++G L A RLFEL+PQN G YV++SNIYA A RW +V  +R 
Sbjct: 625 EVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQ 684

Query: 559 KMKERGLRKIPGCS 572
            MK +G++K PG S
Sbjct: 685 MMKMKGVKKDPGVS 698



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/535 (25%), Positives = 245/535 (45%), Gaps = 37/535 (6%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLC--HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
           +H+ +I  G   D  L+   + L         L Y+  +F  +   N   WNT++  Y++
Sbjct: 93  IHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYAR 152

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
              ++E + IF R+++    PD +TF   ++ C  + S   G  +H+ +I  G   D FV
Sbjct: 153 VDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 212

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G +LID+Y K  +     KVFDEM ERN V+W ++I   A  G   +A  +F  M E  +
Sbjct: 213 GNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESED 272

Query: 234 ------VSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSA 283
                  ++  L+       +    RQ+   +      +N++  T ++  Y++ G +  A
Sbjct: 273 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 332

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F    +R+  +W+++I GY QNG+  EA+++F  M    ++PD F L S++S+C  +
Sbjct: 333 KEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 392

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM--PNRDVVSYC 401
            +      + +++ R+ M+     +   LVDM AKCG+MD A ++++     +R+   + 
Sbjct: 393 SDSQKGRELHNFIVRNTME-EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWN 451

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF----------TIVLTACSHVGLVEDG 451
           S++ G +  G  +++ + F  ML   +  D +            T ++   S  G +   
Sbjct: 452 SILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKA 511

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALLG 508
              F+ M N   IV     +  M+    + G  K A  L   MP +   P+   + A+L 
Sbjct: 512 RTVFDNM-NGKNIVS----WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 566

Query: 509 ACKLYSDIELGELVANRL---FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           AC     +E G  +   +   + +E + A  Y  + ++   A R  D      KM
Sbjct: 567 ACSHTGLVEEGLRIFTSMQEDYNIEAK-AEHYTCMVDLLGRAGRLEDAKEFVEKM 620



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 203/405 (50%), Gaps = 25/405 (6%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR---KEISCARKVFDEMP 198
           +I+ C    S + G +IH  +I  G + D ++ T ++ LY +     ++  ARK+F+EMP
Sbjct: 77  LIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMP 136

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRS---ARQ 254
           ERN+ +W  MI+ YA V D +EA  +FD M +      N      +++ G LRS    +Q
Sbjct: 137 ERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ 196

Query: 255 LFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +  ++     + +      +ID YAK  D  S   +F+   +R+ V W+++IS  AQ G 
Sbjct: 197 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 256

Query: 311 PDEAVKIFSDM--CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
            ++A+ +F  M      +QPD+F   +L++ C+   N +    + ++L R+++      V
Sbjct: 257 FNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI-TKNIIV 315

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
              LV M ++CG ++ A E+F  M  R+  S+ SMI+G   +G  ++A+ LF +M   G+
Sbjct: 316 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 375

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH---YACMVDLLGRTGHLK 485
            PD  + + +L++C  +   + G      + N        E       +VD+  + G + 
Sbjct: 376 KPDCFSLSSMLSSCVSLSDSQKG----RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD 431

Query: 486 SAYELLN-SMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
            A+++ + ++  + + + W ++L     Y++  L +   N   E+
Sbjct: 432 YAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFLEM 473


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 182/523 (34%), Positives = 297/523 (56%), Gaps = 46/523 (8%)

Query: 92  VFNRIVNPNTFL---WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +F+ +  P   L   + ++L   S +   IE  +   R  R  A+P     PLV+K+C+ 
Sbjct: 34  LFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHR--RGGAIPSG-CIPLVLKSCAL 90

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             +  +GT  H   +  G+  DVFV T+L+D Y K   +  A   F+EMP ++ +    +
Sbjct: 91  SAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCL 150

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE------- 261
           I+GY+  GD+ EA+ +FD MP +++ SWN++I      G+ + A  LFD+M         
Sbjct: 151 IIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNA 210

Query: 262 -------------------------------RNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                                          +NV+ +T +++ Y K   +  AR  F+  
Sbjct: 211 ITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRM 270

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P RDVVAWS +I+GY+ NG+P E++++F  M + N +P+E  LV ++SAC+Q+G+ +L  
Sbjct: 271 PRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGE 330

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            + SY+    + L+ +++ +AL+DM  KCG++ RA ++F  M  + V+++ SMI+GL+++
Sbjct: 331 QIGSYIESQTLPLT-SYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALN 389

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ-NVYAIVPSPE 469
           G    A++L+  M+ +G+ P+E+ F  +LTAC+H GLV+ G  FF+ M+ N     P  E
Sbjct: 390 GFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVE 449

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           H AC+VDLL ++G L  AY+ +  M VEP+A  W  LL AC+ ++D+EL +L A +L  L
Sbjct: 450 HCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVL 509

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EP ++  YVLLSNIYA A  W DV  +R  M+ + L+K+   S
Sbjct: 510 EPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYS 552



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 87/217 (40%), Gaps = 39/217 (17%)

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSAC 340
           +AR LF+A P        A +S  ++     E ++  S +  +    P   I + L S  
Sbjct: 30  AARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCA 89

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
               +   +      L R    L    V  ALVD  AK GNMD A   FE MP +D +  
Sbjct: 90  LSAASCQGTQTHCHALVRGM--LGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPM 147

Query: 401 CSMIKGLSIHG----------------------------HG---RQAVSLFDRMLSEGLT 429
             +I G S  G                            HG   ++A++LFD+ML EG +
Sbjct: 148 NCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS 207

Query: 430 PDEVAFTIVLTACSHVGLVEDG-----WRFFEAMQNV 461
           P+ +  T V + C+  G +E G     W   E +QNV
Sbjct: 208 PNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNV 244


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 188/542 (34%), Positives = 302/542 (55%), Gaps = 12/542 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +I+ C       +VH  ++K G E D  + A FI   +S    +S +  +F+ ++  +  
Sbjct: 148 VIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHF-YSRFGFVSLACNLFDNMMIRDIG 206

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++ G+  N +  E   +F  +  +    D  T   ++  C  +  +  G  IH   
Sbjct: 207 TWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYA 266

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I+ G++ D+FV  +LI++Y K  E+  A  +F++M  R++VSW +++  +      V A 
Sbjct: 267 IKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIAL 326

Query: 223 TVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDG 273
            V++ M     V    +  +L     ++G+  S+R +   +  R     ++     +ID 
Sbjct: 327 GVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDM 386

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFI 332
           YAK+G + SAR +FE  P +DV++W++LI+GY+QNG  +EA+ ++S M       P++  
Sbjct: 387 YAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGT 446

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
            VS+++A SQ+G L         L ++ +      V   LVDM  KCG +  A  LF  +
Sbjct: 447 WVSILTAHSQLGALKQGMKAHGQLIKNFLYFD-IFVSTCLVDMYGKCGKLADALSLFYEV 505

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P++  VS+ ++I    +HG+G +AV LF  M SEG+ PD + F  +L+ACSH GLV++G 
Sbjct: 506 PHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQ 565

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
             F+ MQ  Y I PS +HY CMVDL GR GHL+ A+  + +MPV P  S WGALLGAC++
Sbjct: 566 WCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRI 625

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + ++EL   V++ L ++E +N G YVLLSNIYA    W  V  VRS  ++RGL+K PG S
Sbjct: 626 HENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWS 685

Query: 573 SL 574
           S+
Sbjct: 686 SI 687



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 259/500 (51%), Gaps = 28/500 (5%)

Query: 50  QTHL-HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLL 108
           + HL  Q+H+ ++  G  Q   L A  I+  ++    + ++   F++I   + + WN+++
Sbjct: 55  KVHLAKQLHALLVVSGKTQSIFLSAKLINR-YAFLGDIPHARLTFDQIQTKDVYTWNSMI 113

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
             Y++   F      F   +    +  D YTFP VI+AC    ++ +G  +H  V++ G 
Sbjct: 114 SAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG---NLDDGRKVHCLVLKLGF 170

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + DV++  S I  Y +   +S A  +FD M  R++ +W AMI G+   G + EA  VFD 
Sbjct: 171 ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDE 230

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGD 279
           M  +S    +V+ ++L+   V++ D+ S   +         E ++     +I+ YAK G+
Sbjct: 231 MRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE 290

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           + SA ++F     RD+V+W++L++ + QN +P  A+ +++ M S  V PD   LVSL S 
Sbjct: 291 LRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASV 350

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
            +++GN   S  +  +++R    L    +  A++DM AK G +D A ++FE +P +DV+S
Sbjct: 351 AAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVIS 410

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRM-LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF-EA 457
           + S+I G S +G   +A+ ++  M    G  P++  +  +LTA S +G ++ G +   + 
Sbjct: 411 WNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQL 470

Query: 458 MQNV--YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           ++N   + I  S     C+VD+ G+ G L  A  L   +P +   S W A++    L+  
Sbjct: 471 IKNFLYFDIFVS----TCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLHG- 524

Query: 516 IELGELVANRLFELEPQNAG 535
                L A +LF+ E Q+ G
Sbjct: 525 ---YGLKAVKLFK-EMQSEG 540


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 247/386 (63%), Gaps = 5/386 (1%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR++F  MP R+VVSW  M+ G +  G + EAK VF  MP R++VSWNA++ G     D+
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 158

Query: 250 RSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
            +A + F   PE+ + V +T M+ GY  +G++  A   FEA P R++V+W+A+++GY +N
Sbjct: 159 SAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKN 218

Query: 309 GQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
              D+A+++F  M  + NVQP+   L S++  CS +  L     +  +  +  + LSR  
Sbjct: 219 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK--LPLSRNL 276

Query: 368 VIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  +LV M  KCG++  A +LF  M  RDVV++ +MI G + HG G++A++LF+RM  E
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G+ P+ + F  VLTAC H GL + G R FE MQ +Y I P  +HY+CMVDLL R G L+ 
Sbjct: 337 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A +L+ SMP EPH SA+G LL AC++Y ++E  EL A +L E +PQ+AG+YV L+NIYA 
Sbjct: 397 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAG 456

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
           A++W DV  VR  MK+  + K PG S
Sbjct: 457 ANQWDDVSRVRRWMKDNAVVKTPGYS 482



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 160/349 (45%), Gaps = 61/349 (17%)

Query: 92  VFNRIVNPNTFLWNTLL-----KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           +F+RI  P+   +NTLL      G +  +R         RL     V D  ++  ++   
Sbjct: 71  LFDRIPTPDAVSYNTLLSCHFASGDADGAR---------RLFASMPVRDVVSWNTMVSGL 121

Query: 147 SHVLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVS 204
           S   +V E  A+  A+ +R  V  +     +++  +   +++S A + F   PE+ + V 
Sbjct: 122 SKSGAVEEAKAVFLAMPVRNSVSWN-----AMVSGFACSRDMSAAEEWFRNAPEKGDAVL 176

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--- 261
           WTAM+ GY  +G++V+A   F+ MP R+ VSWNA++ G VK      A +LF  M     
Sbjct: 177 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 262 -------------------------------------RNVVSYTTMIDGYAKVGDMTSAR 284
                                                RN+   T+++  Y K GD++SA 
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 296

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LF     RDVVAW+A+ISGYAQ+G   EA+ +F  M  + V+P+    V++++AC   G
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             D        +   +    R    + +VD+  + G ++RA +L  +MP
Sbjct: 357 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 4   IDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKK 63
           + E N      + SS+L  CS  + + F K                     Q+H   +K 
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGK---------------------QIHQWCMKL 270

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
            L ++ ++    +S+ +     LS +  +F  +   +   WN ++ GY+Q+    E   +
Sbjct: 271 PLSRNLTVGTSLVSM-YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINL 329

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYG 182
           F R+  E   P+  TF  V+ AC H      G      +   +G++  V   + ++DL  
Sbjct: 330 FERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLC 389

Query: 183 KRKEISCARKVFDEMP 198
           +  ++  A  +   MP
Sbjct: 390 RAGKLERAVDLIRSMP 405


>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
 gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 548

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 185/513 (36%), Positives = 291/513 (56%), Gaps = 48/513 (9%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK-YTFPLVI---KACSHVLSVREGTAI 158
           +W  L K Y+ NS   E   I+ +L+     P + +  PLVI   KA +       G A+
Sbjct: 23  MWANLAKVYASNSFLREAAIIYSKLL-----PHRTHHLPLVIVLLKATASRADPVLGRAL 77

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA  ++     D  VGT+L+ +Y K   ++ AR+VFD M +RN V+  AM+ GYA+ GD+
Sbjct: 78  HAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDM 137

Query: 219 VEAKTVFDLMPERSNVSWNALIGGL---------------------------------VK 245
           V A+ +F  M  R+ V+W  LI G                                  V 
Sbjct: 138 VSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVA 197

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            GD+ +AR+LF++MP RN   +++M+ G  K G+   A+++F+  P R++V W+ALI+GY
Sbjct: 198 AGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGY 257

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           A+ G  ++A++ F  M    ++PDEF +  ++SAC+Q+G+L+ +  V +++ + H     
Sbjct: 258 AKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQ-HRIRKN 316

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V+  LVDM AKCG++  A  +F+ M  R+   + SMI  LS HG   +A+ LF +M  
Sbjct: 317 QFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMEC 376

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
               P+E+    VL AC+H G V++G R F    ++Y +  + EHY C+VDLLGR+G L+
Sbjct: 377 SEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF-DIYGVAAAVEHYGCLVDLLGRSGRLR 435

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ----NAGSYVLLS 541
            AYE++ +M VEP+   WG+LLGAC+++ D E+ ELV++ + +L  +    N   Y+LLS
Sbjct: 436 EAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYILLS 495

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           NI A+++RW     +R KM   G+ K PGCSS+
Sbjct: 496 NIMASSERWEQAERMRRKMALHGVGKTPGCSSV 528



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 176/404 (43%), Gaps = 64/404 (15%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+  +K     D  +    +S+ +     L+ +  VF+ +++ N    N +L GY+   
Sbjct: 77  LHAEAVKSANAHDRLVGTTLVSV-YCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAG 135

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW------GVDE 169
             +    +F  +     V    T+  +I+  +       G    A   RW      G+ +
Sbjct: 136 DMVSAEALFAGMGSRTPV----TWATLIRGFA-------GKGDMAETRRWFEAMPLGM-Q 183

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           +V   T  +  Y    ++  AR++F++MP RN   W++M+ G    G+  EA+ VFD +P
Sbjct: 184 NVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIP 243

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPE---------------------------- 261
            R+ V+WNALI G  K+G    A + F  M +                            
Sbjct: 244 VRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARK 303

Query: 262 -----------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                      +N      ++D +AK GD+  AR++F+    R+   W+++IS  + +GQ
Sbjct: 304 VHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQ 363

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
             EA+++FS M     +P+E  L++++ AC+  G +D    + S      +  +  H   
Sbjct: 364 SIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEH-YG 422

Query: 371 ALVDMNAKCGNMDRAAELFETM---PNRDVVSYCSMIKGLSIHG 411
            LVD+  + G +  A E+ + M   PN   V + S++    +HG
Sbjct: 423 CLVDLLGRSGRLREAYEIVKNMLVEPNE--VIWGSLLGACRVHG 464



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 130/276 (47%), Gaps = 34/276 (12%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + AVF++I   N   WN L+ GY++     +    F  +++++  PD++T   V+ AC+ 
Sbjct: 235 AQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQ 294

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + S+ +   +H  +I+  + ++ FV   L+D++ K  +++ AR +FD M  RN   W +M
Sbjct: 295 LGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSM 354

Query: 209 IVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           I   +S G  +EA  +F  M     + + ++  A++G     G +    ++F +    ++
Sbjct: 355 ISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF---DI 411

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                 ++ Y  + D+                          ++G+  EA +I  +M   
Sbjct: 412 YGVAAAVEHYGCLVDL------------------------LGRSGRLREAYEIVKNML-- 445

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
            V+P+E I  SL+ AC   G+ ++S  V S + + H
Sbjct: 446 -VEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLH 480



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH+ II+  + ++  ++   + +  +    L+++  +F+ +   NT  WN+++   S +
Sbjct: 303 KVHNFIIQHRIRKNQFVMNGLVDM-FAKCGDLAFARNIFDNMQWRNTECWNSMISALSSH 361

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            + IE   +F ++   E  P++ T   V+ AC+H   V EG  I +    +GV   V   
Sbjct: 362 GQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEHY 421

Query: 175 TSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYASVGD 217
             L+DL G+   +  A ++   M  E N V W +++      GD
Sbjct: 422 GCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGD 465



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 32/226 (14%)

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           RD   W+ L   YA N    EA  I+S +          ++V L +  S+          
Sbjct: 19  RDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVLLKATASR---------A 69

Query: 353 DSYLSRS-HMDL---SRAH---VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           D  L R+ H +    + AH   V   LV +  KCG +  A  +F+ M +R+ V+  +M+ 
Sbjct: 70  DPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLA 129

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA----MQNV 461
           G +  G    A +LF  M S   TP  V +  ++   +  G + +  R+FEA    MQNV
Sbjct: 130 GYAAAGDMVSAEALFAGMGSR--TP--VTWATLIRGFAGKGDMAETRRWFEAMPLGMQNV 185

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                + + Y          G +++A EL N MP   +A  W +++
Sbjct: 186 VTWTVAVQAYVA-------AGDMETARELFNKMPAR-NAFVWSSMV 223


>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
 gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
 gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
          Length = 493

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 174/446 (39%), Positives = 259/446 (58%), Gaps = 33/446 (7%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           L+    +PD  +    +  CS + S    + +H+  +R G   DV+V  +    Y    +
Sbjct: 62  LLNHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAAD 121

Query: 187 ISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV 244
           ++ A ++F E      +VV+WT M+ G+A+ GD+  A+  FD MPE++ VSWN ++G   
Sbjct: 122 VASAERLFSEASRDVADVVTWTTMVTGHANAGDVERARWFFDAMPEKNVVSWNTMLGAYA 181

Query: 245 KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           + G L  AR+LFD MP RN  +                               W ++I+G
Sbjct: 182 RAGMLPKARKLFDRMPSRNAAT-------------------------------WGSMITG 210

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
             Q+   +EA+++FSDM +  V P+E  LVS +SAC+Q+  ++   WV  Y  R      
Sbjct: 211 LLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAM 270

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
            A +  A+VDM  KCG++  A  +F  MP R++ S+ SMI GL+++G  RQA+SLF +M 
Sbjct: 271 SAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQ 330

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
             G+ P+++ F  +L+ACSH GLV++G   F  M N + I P PEHY  MVDLLGR+GH+
Sbjct: 331 LAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHV 390

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
           + A + + SMPVEPH   WGAL GACK++ ++ELGE VA +L ELEPQ+   Y+LLSNIY
Sbjct: 391 REAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIY 450

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPG 570
           AT++RW D+  VR  +K+R + K  G
Sbjct: 451 ATSNRWDDMANVRRILKDRKVPKGTG 476



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 12/276 (4%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            ++ A  L  +  +F+R+ + N   W +++ G  Q+    E   +F  ++    VP++  
Sbjct: 179 AYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPA 238

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
               + AC+ +  +  GT +H    R         + T+++D+YGK   I  A +VF  M
Sbjct: 239 LVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAM 298

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVF---DLMPERSN-VSWNALIGGLVKIGDLRSAR 253
           P RN+ SW +MI G A  G   +A ++F    L   R N +++  L+      G +   R
Sbjct: 299 PVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGR 358

Query: 254 QLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQ 307
            LF +M     +      Y  M+D   + G +  A    ++ P +     W AL      
Sbjct: 359 WLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKI 418

Query: 308 NGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQ 342
           +G+ +   ++   +     Q    +IL+S + A S 
Sbjct: 419 HGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSN 454


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 303/567 (53%), Gaps = 23/567 (4%)

Query: 16  CSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHF 75
           C + L + S   P  +  P  L + L+L    K+       H  ++K G E D  + A  
Sbjct: 136 CVTELLSLSGVRPDFYTFPPVLKACLSLADGEKM-------HCWVLKMGFEHDVYVAASL 188

Query: 76  ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
           I L +S    +  +  VF  +   +   WN ++ G+ QN    E   +  R+  EE   D
Sbjct: 189 IHL-YSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMD 247

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
             T   ++  C+    V  G  +H  VI+ G++ DVFV  +LI++Y K   +  A++VFD
Sbjct: 248 TVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFD 307

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDL 249
            M  R++VSW ++I  Y    D V A   F  M      P+   V   A I G  ++ D 
Sbjct: 308 GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG--QLSDR 365

Query: 250 RSARQLFD-----EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           R  R +          E ++V    +++ YAK+G +  AR++FE  P RDV++W+ LI+G
Sbjct: 366 RIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITG 425

Query: 305 YAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           YAQNG   EA+  ++ M   + + P++   VS++ A S VG L     +   L ++ + L
Sbjct: 426 YAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFL 485

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
               V   L+DM  KCG ++ A  LF  +P    V + ++I  L IHGHG +A+ LF  M
Sbjct: 486 D-VFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
            ++G+  D + F  +L+ACSH GLV++    F+ MQ  Y I P+ +HY CMVDL GR G+
Sbjct: 545 RADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGY 604

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L+ AY L+++MP++  AS WG LL AC+++ + ELG   ++RL E++ +N G YVLLSNI
Sbjct: 605 LEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNI 664

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPG 570
           YA   +W     VRS  ++RGLRK PG
Sbjct: 665 YANVGKWEGAVKVRSLARDRGLRKTPG 691



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 241/475 (50%), Gaps = 20/475 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++  G  QD  L+   ++L  +L   LS S+  F  I   N F WN+++  Y + 
Sbjct: 69  QLHALLLVLGKAQDVVLLTQLVTLYATLGD-LSLSSTTFKHIQRKNIFSWNSMVSAYVRR 127

Query: 115 SRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
            R+ +       L+    V PD YTFP V+KAC   LS+ +G  +H  V++ G + DV+V
Sbjct: 128 GRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCWVLKMGFEHDVYV 184

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
             SLI LY +   +  A KVF +MP R+V SW AMI G+   G++ EA  V D M     
Sbjct: 185 AASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEV 244

Query: 234 VSWNALIGGLVKI--------GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
                 +  ++ I        G +     +     E +V     +I+ Y+K G +  A+ 
Sbjct: 245 KMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQR 304

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F+    RD+V+W+++I+ Y QN  P  A+  F +M    ++PD   +VSL S   Q+ +
Sbjct: 305 VFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSD 364

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
             +   V  ++ R         +  ALV+M AK G++D A  +FE +P+RDV+S+ ++I 
Sbjct: 365 RRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLIT 424

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLT--PDEVAFTIVLTACSHVGLVEDGWRFF-EAMQNVY 462
           G + +G   +A+  ++ M+ EG T  P++  +  +L A SHVG ++ G +     ++N  
Sbjct: 425 GYAQNGLASEAIDAYN-MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-- 481

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
            +        C++D+ G+ G L+ A  L   +P E  +  W A++ +  ++   E
Sbjct: 482 CLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQET-SVPWNAIISSLGIHGHGE 535



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 147/299 (49%), Gaps = 10/299 (3%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F LV ++C+++   ++   +HA ++  G  +DV + T L+ LY    ++S +   F  + 
Sbjct: 54  FNLVFRSCTNINVAKQ---LHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV-----SWNALIGGLVKIGDLRSAR 253
            +N+ SW +M+  Y   G   ++      +   S V     ++  ++   + + D     
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMH 170

Query: 254 QLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
               +M  E +V    ++I  Y++ G +  A  +F   P RDV +W+A+ISG+ QNG   
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+++   M ++ V+ D   + S++  C+Q  ++     V  Y+ +  ++ S   V  AL
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLE-SDVFVSNAL 289

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           ++M +K G +  A  +F+ M  RD+VS+ S+I     +     A+  F  ML  G+ PD
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPD 348


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 281/485 (57%), Gaps = 7/485 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVL 150
           VF+R+   +T LWNT++ GY +N  ++E   +F  LI E     D  T   ++ A + + 
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +R G  IH+   + G     +V T  I LY K  +I  A  +F E    ++V++ AMI 
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIH 295

Query: 211 GYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
           GY S G+   + ++F +LM   + +  + L+  +   G L     +     + N +S+T+
Sbjct: 296 GYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTS 355

Query: 270 ----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
               +   Y+K+ ++ SAR LF+ +P++ + +W+A+ISGY QNG  ++A+ +F +M +  
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSE 415

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
             P+   +  ++SAC+Q+G L L  WV   L RS    S  +V  AL+ M AKCG++  A
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEA 474

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             LF+ MP ++ V++ +MI G  +HGHG++A+++F  ML+ G+ P  V F  VL ACSH 
Sbjct: 475 RRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHA 534

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV++G   F +M + Y   PS +HYAC+VD+LGR GHL+ A + + +MP++P  S W  
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWET 594

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+++ D  L   V+ +LFEL+P N G +VLLSNI++    +     VR   K+R L
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654

Query: 566 RKIPG 570
            K PG
Sbjct: 655 AKAPG 659



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 231/490 (47%), Gaps = 31/490 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L L K+    +HL Q H+ I+  G   D SL+         L   + Y+  +F  +  P+
Sbjct: 24  LDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGA-IYYARDIFLSVQRPD 82

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
            FL+N L++G+S N        +F  L +   + P+  T+   I A S     R G  IH
Sbjct: 83  VFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIH 142

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
              I  G D ++ +G++++ +Y K   +  ARKVFD MPE++ + W  MI GY      V
Sbjct: 143 GQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYV 202

Query: 220 EAKTVF-DLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG- 273
           E+  VF DL+ E        +   ++  + ++ +LR   Q+     +    S+  ++ G 
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262

Query: 274 ---YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
              Y+K G +  A +LF      D+VA++A+I GY  NG+ + ++ +F ++     +   
Sbjct: 263 ISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKS 322

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             LVSL+      G+L L   +  Y  +S+  LS   V  AL  + +K   ++ A +LF+
Sbjct: 323 STLVSLVPVS---GHLMLIYAIHGYSLKSNF-LSHTSVSTALTTVYSKLNEIESARKLFD 378

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
             P + + S+ +MI G + +G    A+SLF  M +   +P+ V  T +L+AC+ +G +  
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSL 438

Query: 451 G-WRFFEAMQNVYAIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           G W        V+ +V S +  +       ++ +  + G +  A  L + MP + +   W
Sbjct: 439 GKW--------VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTW 489

Query: 504 GALLGACKLY 513
             ++    L+
Sbjct: 490 NTMISGYGLH 499


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 179/526 (34%), Positives = 293/526 (55%), Gaps = 45/526 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F ++   +   WN+++ G+ Q+ RF E    F ++     + ++Y+F   + AC+ +  
Sbjct: 107 IFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQD 166

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           ++ G+ IH+ V R     DV++G++L+D+Y K   +  A+ VFDEM  R+ VSW ++I  
Sbjct: 167 LKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITC 226

Query: 212 YASVGDLVEAKTVFDLM------PERSNVS------------------------------ 235
           Y   G + EA  +F  M      P+   ++                              
Sbjct: 227 YEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRN 286

Query: 236 ----WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
                NAL+    K   +  AR +FD MP R+VVS T+M+ GYAK   +  AR +F    
Sbjct: 287 DLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMM 346

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
            +DV+ W+ALI+G  QNG+ +EA+ +F  +  ++V P  +   +L++AC+ + +L L   
Sbjct: 347 VKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQ 406

Query: 352 VDSYLSR-----SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             S++ +      + + S   V  +L+DM  KCG+++    +F+ M  +D VS+ +MI G
Sbjct: 407 AHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVG 466

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + +G G +A+ +F +ML  G  PD V    VL ACSH GL+++G  +F +M   + ++P
Sbjct: 467 YAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMP 526

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             +HY CMVDLLGR G+L+ A  L+  M ++P A  WG+LL ACK++ +I+LGE V  +L
Sbjct: 527 LKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKL 586

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E++P+N+G YVLLSN+YA    W +V  VR  M++RG+ K PGCS
Sbjct: 587 LEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCS 632



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 200/422 (47%), Gaps = 55/422 (13%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           LSA   ++  KL +   Q+HS + +     D  + +  + + +S    + Y+ +VF+ + 
Sbjct: 158 LSACAGLQDLKLGS---QIHSLVYRSNYLSDVYMGSALVDM-YSKCGRVEYAQSVFDEMT 213

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
             +   WN+L+  Y QN    E   IFV +I+    PD+ T   V+ AC+ + +++EG  
Sbjct: 214 VRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273

Query: 158 IHAAVIRWGVDE---DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           IHA V++   DE   D+ +G +L+D+Y K   I+ AR +FD MP R+VVS T+M+ GYA 
Sbjct: 274 IHARVVK--CDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAK 331

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIG--------------------------- 247
              +  A+ +F  M  +  ++WNALI G  + G                           
Sbjct: 332 ASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNL 391

Query: 248 --------DLRSARQL----------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
                   DL+  RQ           F    + +V    ++ID Y K G + +   +F+ 
Sbjct: 392 LNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQH 451

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
             ++D V+W+A+I GYAQNG  ++A+++F  M      PD   ++ ++ ACS  G LD  
Sbjct: 452 MLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEG 511

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLS 408
            +    ++  H  +        +VD+  + G ++ A  L E M  + D + + S++    
Sbjct: 512 RYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACK 571

Query: 409 IH 410
           +H
Sbjct: 572 VH 573



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 187/400 (46%), Gaps = 60/400 (15%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D   F  ++  C+   S R+ + +HA +I+     + F+   LID+YGK   +  ARK+F
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIG------- 247
           D M ERN+ SW ++I  +   G L +A  +F+ MP+    SWN++I G  + G       
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 248 ----------------------------DLRSARQLFDEMPERNVVSYTTM----IDGYA 275
                                       DL+   Q+   +   N +S   M    +D Y+
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G +  A+S+F+    R  V+W++LI+ Y QNG  DEA+KIF +M    V+PDE  L S
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFETMP 393
           ++SAC+ +  +     + + + +   D  R  +I   AL+DM AKC  ++ A  +F+ MP
Sbjct: 258 VVSACATISAIKEGQQIHARVVKC--DEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            R VVS  SM+ G +     + A  +F  M    +  D + +  ++  C+  G  E+   
Sbjct: 316 IRSVVSETSMVSGYAKASKVKVARYMFSNM----MVKDVITWNALIAGCTQNGENEEALI 371

Query: 454 FFEAMQNVYAIVPSPEHY-------AC--MVDL-LGRTGH 483
            F  ++        P HY       AC  + DL LGR  H
Sbjct: 372 LFRLLKRESVW---PTHYTFGNLLNACANLADLQLGRQAH 408



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 149/282 (52%), Gaps = 15/282 (5%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N LI    K G +  AR+LFD M ERN+ S+ ++I  + K G +  A  +FE  P  D  
Sbjct: 58  NRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQC 117

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+++ISG+ Q+G+ DEA+  F+ M       +E+   S +SAC+ + +L L + + S +
Sbjct: 118 SWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV 177

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            RS+  LS  ++ +ALVDM +KCG ++ A  +F+ M  R  VS+ S+I     +G   +A
Sbjct: 178 YRSNY-LSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEA 236

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA---- 472
           + +F  M+  G+ PDEV    V++AC+ +  +++G       Q ++A V   + +     
Sbjct: 237 LKIFVEMIKCGVEPDEVTLASVVSACATISAIKEG-------QQIHARVVKCDEFRNDLI 289

Query: 473 ---CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
               ++D+  +   +  A  + + MP+    S    + G  K
Sbjct: 290 LGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAK 331


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 308/596 (51%), Gaps = 80/596 (13%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q H+ I+K G + D  + A  I+  +S     + +  V   I +P  + +++L+   ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIA-SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F +   +F R+     +PD +  P + K C+ + + + G  IH      G+D D FV 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            S+  +Y +   +  ARKVFD M +++VV+ +A++  YA  G L E   +   M     E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVS------------------ 266
            + VSWN ++ G  + G  + A  +F ++      P++  VS                  
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 267 ---------------YTTMIDGYAKVGDMTSARSLF------------------------ 287
                           + MID Y K G +    SLF                        
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 288 -----------EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
                      E   + +VV+W+++I+G AQNG+  EA+++F +M    V+P+   + S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC  +  L        +  R H+ L   HV +AL+DM AKCG ++ +  +F  MP ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           +V + S++ G S+HG  ++ +S+F+ ++   L PD ++FT +L+AC  VGL ++GW++F+
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M   Y I P  EHY+CMV+LLGR G L+ AY+L+  MP EP +  WGALL +C+L +++
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +L E+ A +LF LEP+N G+YVLLSNIYA    W +V  +R+KM+  GL+K PGCS
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 267/489 (54%), Gaps = 67/489 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L YS A+F R  NP+ F W  ++ G++      +    + +++ +   P+ +TF  ++K 
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKL 84

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C     +  G A+H+  ++ G D          DLY +                      
Sbjct: 85  CP----IEPGKALHSQAVKLGFDS---------DLYVR---------------------- 109

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           T ++  YA  GD+V                               SA+QLFD MPE+++V
Sbjct: 110 TGLLDVYARGGDVV-------------------------------SAQQLFDTMPEKSLV 138

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S T M+  YAK G++ +AR LF+   +RD V W+ +I GY QNG P+EA+ +F  M    
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
            +P+E  ++S++SAC Q+G L+   WV SY+  + +  +  HV  ALVDM +KCG+++ A
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFN-VHVGTALVDMYSKCGSLEDA 257

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F+ + ++DVV++ SMI G ++ G  ++A+ LF  M   GL P  + F  +L+AC H 
Sbjct: 258 RLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHS 317

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           G V +GW  F  M++ Y I P  EHY CMV+LLGR GH++ AYEL+ +M +EP    WG 
Sbjct: 318 GWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGT 377

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+L+  I LGE +   L +    N+G+Y+LLSNIYA    W  V  +R+ MK+ G+
Sbjct: 378 LLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 437

Query: 566 RKIPGCSSL 574
           +K PGCSS+
Sbjct: 438 KKEPGCSSI 446



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 151/323 (46%), Gaps = 35/323 (10%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C++    L  +  +F+ +   +   WN ++ GY+QN    E   +F R+++ +A P++ T
Sbjct: 146 CYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVT 205

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              V+ AC  + ++  G  +H+ +   G+  +V VGT+L+D+Y K   +  AR VFD++ 
Sbjct: 206 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 265

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQ 254
           +++VV+W +MIVGYA  G   EA  +F  M       +N+++  ++      G +     
Sbjct: 266 DKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 325

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           +F++M +                          E   +  +  +  +++   + G  ++A
Sbjct: 326 IFNKMKD--------------------------EYGIEPKIEHYGCMVNLLGRAGHVEQA 359

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
            ++  +M   N++PD  +  +L+ AC   G + L   +   L   ++  S  +++  L +
Sbjct: 360 YELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL--LSN 414

Query: 375 MNAKCGNMDRAAELFETMPNRDV 397
           + A  GN D  A L   M +  V
Sbjct: 415 IYAAVGNWDGVARLRTMMKDSGV 437



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 32/262 (12%)

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YA +G +  + +LF    +  V  W+A+I G+A  G  ++A+  ++ M ++ V+P+ F  
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 334 VSLMSAC---------SQVGNLDLSNWVDSYLSRSHMDL-SRAH---------------- 367
            S++  C         SQ   L   +  D Y+    +D+ +R                  
Sbjct: 79  SSILKLCPIEPGKALHSQAVKLGFDS--DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKS 136

Query: 368 --VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
              + A++   AK G +D A  LF+ M  RD V +  MI G + +G   +A+ LF RML 
Sbjct: 137 LVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK 196

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
               P+EV    VL+AC  +G +E G R+  +      I  +      +VD+  + G L+
Sbjct: 197 AKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 255

Query: 486 SAYELLNSMPVEPHASAWGALL 507
            A  + + +  +    AW +++
Sbjct: 256 DARLVFDKID-DKDVVAWNSMI 276


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 179/534 (33%), Positives = 301/534 (56%), Gaps = 20/534 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF-NRIVNPNTFLWNTLLKGYSQ 113
           Q+HS +I  G       +   I++ +S    +  +  VF +     N F +N ++ G+  
Sbjct: 32  QLHSLMITYGFSPSPPSITSLINM-YSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVS 90

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           N    + F  + ++  E  +PDKYTFP V++ C  V+ V++   IH  +++ G++ DVFV
Sbjct: 91  NGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK---IHGCLLKMGLELDVFV 147

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G++L++ Y K   +  A+KVF E+  R+VV W AMI GYA +G L EA  VF  M  +  
Sbjct: 148 GSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGV 207

Query: 234 VSWNALIGGLVKI----GDLRSARQLFD---EMPERNVVSYTT-MIDGYAKVGDMTSARS 285
                 I G++ +    GDL + + +     +M   + VS +  +ID Y K   +  A  
Sbjct: 208 APSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALI 267

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE   ++D+ +W+++IS + Q G  D  +++F  M    + PD   + +++ ACS +  
Sbjct: 268 IFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAA 327

Query: 346 LDLSNWVDSYLSRSHMD-------LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           L     +  Y+  + +        +    V  A++DM AKCG+M+ A ++F++M  +DV 
Sbjct: 328 LMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVA 387

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+  MI G  +HG+  +A+ +F +M      P+EV    VL+AC+H G V  G  F   M
Sbjct: 388 SWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQM 447

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           ++ + ++P+ EHY C++D+LGR GHL+ AYE++  MP++ +   W ALLGAC+L+ + EL
Sbjct: 448 ESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAEL 507

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E+ A ++ +LEP++ GSYVL+SN+Y    R+ +V  VR  MKE+ ++K PGCS
Sbjct: 508 AEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCS 561



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 182/393 (46%), Gaps = 22/393 (5%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +++ C     + ++H  ++K GLE D   V   +   +     +  +  VF  +   +  
Sbjct: 119 VVRTCCEVMEVKKIHGCLLKMGLELD-VFVGSALVNTYLKNGSMEDAQKVFGELSIRDVV 177

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LWN ++ GY++     E   +F R+  +   P ++T   ++   +    +  G  +H  V
Sbjct: 178 LWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIV 237

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++ G D  V V  +LID+YGK K I  A  +F+ + E+++ SW ++I  +   GD     
Sbjct: 238 MKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTL 297

Query: 223 TVFD------LMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------------PERNV 264
            +FD      ++P+   V+   ++     +  L   R++   M               N+
Sbjct: 298 RLFDKMLGSGILPDL--VTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNL 355

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +    ++D YAK G M +A  +F++   +DV +W+ +I GY  +G   EA+ +FS MC  
Sbjct: 356 LVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEA 415

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
             +P+E  LV ++SAC+  G +       + +  +   +        ++DM  + G+++ 
Sbjct: 416 EFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLED 475

Query: 385 AAELFETMP-NRDVVSYCSMIKGLSIHGHGRQA 416
           A E+ + MP   + V + +++    +HG+   A
Sbjct: 476 AYEIVQKMPIQANPVVWRALLGACRLHGNAELA 508



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 192/384 (50%), Gaps = 27/384 (7%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF-DEMPERN 201
           +++C+   ++ +G  +H+ +I +G        TSLI++Y K  ++  A  VF D   ERN
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 202 VVSWTAMIVGYASVG------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255
           V ++ A+I G+ S G         +   +  +MP++   ++  ++    ++ +++     
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDK--YTFPCVVRTCCEVMEVKKIHGC 135

Query: 256 FDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
             +M  E +V   + +++ Y K G M  A+ +F     RDVV W+A+I+GYA+ G  DEA
Sbjct: 136 LLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEA 195

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           +++F  M  K V P  F +  ++S  +  G+LD    V   + +   D S   V  AL+D
Sbjct: 196 LEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYD-SGVSVSNALID 254

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH---GHGRQAVSLFDRMLSEGLTPD 431
           M  KC ++  A  +FE +  +D+ S+ S+I   S+H   G     + LFD+ML  G+ PD
Sbjct: 255 MYGKCKHIGDALIIFEMINEKDIFSWNSII---SVHEQCGDHDGTLRLFDKMLGSGILPD 311

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--------CMVDLLGRTGH 483
            V  T VL ACSH+  +  G R       +  +    E+ A         ++D+  + G 
Sbjct: 312 LVTITTVLPACSHLAALMHG-REIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGS 370

Query: 484 LKSAYELLNSMPVEPHASAWGALL 507
           + +A ++ +SM  +  AS W  ++
Sbjct: 371 MNNALKIFDSMSKKDVAS-WNIMI 393


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 285/487 (58%), Gaps = 9/487 (1%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ S   F +I NPNT  W T+L G+++  +  E   +F ++     V         ++ 
Sbjct: 218 LNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQN 277

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C     V E  ++   +     +++    T++I+ Y +  ++  AR++ ++MP RNV + 
Sbjct: 278 CH----VDEAISLFMEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQ 329

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           TAMI GY     + +A+ +F+ +  R  V WN +I G  + G +  A  LF +M ++++V
Sbjct: 330 TAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIV 389

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+ TM+  YA+VG M +A  +FE   ++++V+W++LISG  QNG   +A+K F  M  + 
Sbjct: 390 SWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEG 449

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
            +PD+      +S+C+ +  L +   +   + +S    +   V  AL+ M AKCG++  A
Sbjct: 450 QKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY-ATDLFVSNALITMYAKCGSISSA 508

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             LF+ + + DVVS+ S+I   +++G+GR+A+ LF +M  EG+ PDEV F  +L+ACSHV
Sbjct: 509 ELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHV 568

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GL++ G + F+ M   Y I P  EHYACMVDLLGR G L+ A++L+  M +  +A  WGA
Sbjct: 569 GLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGA 628

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+++ ++EL +  A +L E EP    +YVLLSN+ A A RW +V  VR  MKE+G 
Sbjct: 629 LLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGA 688

Query: 566 RKIPGCS 572
            K PG S
Sbjct: 689 EKQPGWS 695



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 238/517 (46%), Gaps = 79/517 (15%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +V  H+  K     +S+++ F          +S +  +F+ +   N   WN+++  Y  N
Sbjct: 36  KVFQHMTHKNTVTHNSMISAFAK-----NGRISDARQLFDGMPQRNIVSWNSMIAAYLHN 90

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV-IRWGVDEDVFV 173
            R  E   +F ++       D Y++ L+I   +    + +   +   +  +W    +   
Sbjct: 91  DRVEEARQLFDKM----PTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKW----NPVC 142

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
             +++  Y K ++   AR++FD MP +++VSW +M+ GY   G++      F+ M ER  
Sbjct: 143 CNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV 202

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           VSWN ++ G V++GDL S+ + F+++P  N VS+ TM+ G+A+ G +  AR LF+  P R
Sbjct: 203 VSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR 262

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN--- 350
           +VVAW+A+I+ Y QN   DEA+ +F +M  KN         ++++   ++G LD +    
Sbjct: 263 NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN----SISWTTVINGYVRMGKLDEARQLL 318

Query: 351 -------------WVDSYLSRSHMDLSRA------------------------------H 367
                         +  Y+    MD +R                               H
Sbjct: 319 NQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALH 378

Query: 368 VIAALVDMN-----------AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           +   +V  +           A+ G MD A ++FE M  +++VS+ S+I GL+ +G    A
Sbjct: 379 LFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDA 438

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMV 475
           +  F  M  EG  PD+  F   L++C+H+  ++ G +  +  M++ YA      +   ++
Sbjct: 439 LKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN--ALI 496

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
            +  + G + SA ELL          +W +L+ A  L
Sbjct: 497 TMYAKCGSISSA-ELLFKDIDHFDVVSWNSLIAAYAL 532



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 171/326 (52%), Gaps = 19/326 (5%)

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           VF     I   GK  +I  A KVF  M  +N V+  +MI  +A  G + +A+ +FD MP+
Sbjct: 15  VFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQ 74

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           R+ VSWN++I   +    +  ARQLFD+MP R++ S+T MI  Y + G++  AR+LF   
Sbjct: 75  RNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL 134

Query: 291 PDR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
           P + + V  +A+++GYA+N Q DEA ++F  M +K    D     S+++  ++ G + L 
Sbjct: 135 PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK----DLVSWNSMLTGYTRNGEMRLG 190

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             +  +   +  D+   ++   +VD   + G+++ + E FE +PN + VS+ +M+ G + 
Sbjct: 191 --LQFFEEMAERDVVSWNL---MVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFAR 245

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
            G   +A  LFD+M    +    VA+  ++ A      V++    F  M    +I     
Sbjct: 246 FGKIAEARRLFDQMPIRNV----VAWNAMIAAYVQNCHVDEAISLFMEMPEKNSI----- 296

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMP 495
            +  +++   R G L  A +LLN MP
Sbjct: 297 SWTTVINGYVRMGKLDEARQLLNQMP 322


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/510 (35%), Positives = 286/510 (56%), Gaps = 9/510 (1%)

Query: 71  LVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130
            V   I  C+   + ++ +  VF+ ++  +T LWNT++ G  +NS F E   IF  +++ 
Sbjct: 142 FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKG 201

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
               D  T   V+   + +  +  G  I    ++ G     +V T L  LY K  EI  A
Sbjct: 202 GIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETA 261

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGL---VKI 246
           R +F ++ + ++VS+ AMI GY    +   +  +F +L+     V+ ++++G +      
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPF 321

Query: 247 GDLRSARQLF----DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
           G L   R +           N    T +   Y+++ ++ SAR LF+ + ++ + +W+A+I
Sbjct: 322 GHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMI 381

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SGYAQNG  ++A+ +F +M    V+P+   + S++SAC+Q+G L L  WV   ++R   +
Sbjct: 382 SGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE 441

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            S   V  AL+DM AKCG++  A  LF  MP ++ V++ +MI G  +HG+G +A++LF+ 
Sbjct: 442 -SNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNE 500

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           ML   ++P  V F  VL ACSH GLV +G   F +M + +   P PEHYACMVDLLGR G
Sbjct: 501 MLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAG 560

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
           +L  A + +  MPVEP    WGALLGAC ++ D  L  L +++LFEL+PQN G YVLLSN
Sbjct: 561 NLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSN 620

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           IY+    + +   VR  +K R L K PGC+
Sbjct: 621 IYSAGQNYPEAASVRGVVKRRKLAKTPGCT 650



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 239/490 (48%), Gaps = 32/490 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA--TPLSYSTAVFNRIVN 98
           LTLI +      L+Q H+ II  GL  D   V     L H L+    +  ++ +F+ I N
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVT---KLTHKLSHLKAIDQASLLFSTIPN 70

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTA 157
           P+ FL+N L++ +S N+      +++  L +   + PD +T+  VI       S+  G  
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISG---ASSLGLGLL 127

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS--- 214
           +HA  I  G   D+FVG++++  Y K   ++ ARKVFD M ER+ V W  M+ G      
Sbjct: 128 LHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSC 187

Query: 215 -------VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
                   GD+V+    FD      + +  A++ G+ ++ DL     +     +    S+
Sbjct: 188 FDEAILIFGDMVKGGIGFD------STTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSH 241

Query: 268 TTMIDG----YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
             +I G    Y+K G++ +AR LF      D+V+++A+ISGY  N + + +V++F ++  
Sbjct: 242 AYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLV 301

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              + +   +V L+      G+L L+  +  + ++S   +S + V  AL  + ++   ++
Sbjct: 302 SGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS-GVVSNSSVSTALTTVYSRLNEIE 360

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  LF+    + + S+ +MI G + +G   +A+SLF  M    + P+ V  T +L+AC+
Sbjct: 361 SARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACA 420

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
            +G +  G ++   + N  +   +      ++D+  + G +  A  L + MP E +A  W
Sbjct: 421 QLGALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTW 478

Query: 504 GALLGACKLY 513
            A++    L+
Sbjct: 479 NAMISGYGLH 488


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 202/597 (33%), Positives = 313/597 (52%), Gaps = 69/597 (11%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
            +L+  CK  + L ++H+ ++  GL +D       +SL  S    +  +  +F+RI NP+
Sbjct: 90  FSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFG-HVECARLMFDRIRNPD 148

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIF-VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            + W  +++ Y  N  + E+   +  RL +     D   F +V+KACS +    EG  +H
Sbjct: 149 LYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH 208

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +++ G   D FV T L+D+Y K +E+  +R+VFDE+ +RNVV WT+MIVGY     L 
Sbjct: 209 CQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLK 267

Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMI 271
           E   +F+ M E     +  +  +L+    K+G L   + +   + +     N    T ++
Sbjct: 268 EGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLL 327

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K GD+  A S+F+     D+V+W+A+I GYAQ G P EA+K+F+D   K++ P+  
Sbjct: 328 DLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTV 387

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
              S++SAC+Q G+L++   V     +  +    A    ALVDM AKC  +  A  +FET
Sbjct: 388 TTSSVLSACAQTGSLNMGRSVHCLGIK--LGSEDATFENALVDMYAKCHMIGDARYVFET 445

Query: 392 MPNRDVVSYCSMIKGL-------------------------------------------- 407
           + ++DV+++ S+I G                                             
Sbjct: 446 VFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVG 505

Query: 408 -SIHGH--------GR---QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
            S+HG+        GR   +++ LF  ML E L P+EV FT +L+ACSH G++ +GWR+F
Sbjct: 506 SSLHGYAIKAGLLSGRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYF 565

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
             M  VY  VPS +HYACMVDLL R G L+ A + +  +P++P  S  GA L  C+L+S 
Sbjct: 566 NTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSR 625

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +LGE+   R+ EL P  A  YVL+SN+YA+  RW     V   MK+RGL K+PG S
Sbjct: 626 FDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWS 682


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 302/555 (54%), Gaps = 20/555 (3%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           ++ KP C+  A +L+  C     L    Q+HS++IK G+  D  +    + L +   + +
Sbjct: 308 DYLKPDCVTVA-SLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDL-YVNCSDI 365

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
             +  +F      N  LWN +L  + +     E F IF ++  +  +P+++T+P +++ C
Sbjct: 366 KTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTC 425

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           + V ++  G  IH  VI+ G   +V+V + LID+Y K  ++  A  +   + E +VVSWT
Sbjct: 426 TSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWT 485

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           A+I GYA      EA   F  M  R     N+ +++ I     I  L   RQ+     + 
Sbjct: 486 ALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIH---AQS 542

Query: 263 NVVSYT-------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            V  Y+        ++  YA+ G +  A   FE    +D ++W+ LISG+AQ+G  ++A+
Sbjct: 543 YVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDAL 602

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           K+F+ M    ++   F   S +SA + + N+     + + + +   D S   V  AL+  
Sbjct: 603 KVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFD-SDIEVSNALITF 661

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            AKCG+++ A   F  MP ++ VS+ +MI G S HG+G +AV+LF++M   G  P+ V F
Sbjct: 662 YAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTF 721

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             VL+ACSHVGLV  G  +FE+M   + +VP P HYAC+VDL+ R G L  A + +  MP
Sbjct: 722 VGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMP 781

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           +EP A+ W  LL AC ++ ++E+GE  A  L ELEP+++ +YVLLSN+YA + +W     
Sbjct: 782 IEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQ 841

Query: 556 VRSKMKERGLRKIPG 570
            R  M+ RG++K PG
Sbjct: 842 TRQMMRNRGVKKEPG 856



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 241/512 (47%), Gaps = 20/512 (3%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           FP P    S L+   K KL     Q+H+ + K G   +  +    ++L   +   +S + 
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVS-AE 268

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            VF+++ + +   +N+L+ G +Q         +F ++ R+   PD  T   ++ AC+   
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNG 328

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++ +G  +H+ VI+ G+  D+ V  +L+DLY    +I  A ++F      NVV W  M+V
Sbjct: 329 ALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 211 GYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPER---- 262
            +  + +L E+  +F  M  +    +  ++ +++     +G L    Q+  ++ +     
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF 448

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           NV   + +ID YAK G + +A  +     + DVV+W+ALISGYAQ+    EA+K F +M 
Sbjct: 449 NVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEML 508

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWV--DSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           ++ +Q D     S +SAC+ +  L+    +   SY+S    DLS  +   ALV + A+CG
Sbjct: 509 NRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGN---ALVSLYARCG 565

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  A   FE +  +D +S+  +I G +  G+   A+ +F +M    L      F   ++
Sbjct: 566 RIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVS 625

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           A +++  ++ G +   AM          E    ++    + G ++ A      MP E + 
Sbjct: 626 AAANIANIKQG-KQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMP-EKND 683

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ 532
            +W A++     YS    G    N LFE   Q
Sbjct: 684 VSWNAMITG---YSQHGYGNEAVN-LFEKMKQ 711



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 205/461 (44%), Gaps = 12/461 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ II  GL     +    I L       +S +  VF+ +   ++  W  ++ G+SQN
Sbjct: 133 QIHARIICHGLLCSPIISNPLIGLYAKNGLIIS-ARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +      P  Y F  V+  C+ +     G  +HA V ++G   + +V 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
            +L+ LY +      A KVF +M  ++ VS+ ++I G A  G    A  +F  M      
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSL 286
              V+  +L+      G L    QL   + +  + S       ++D Y    D+ +A  +
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F  A   +VV W+ ++  + +     E+ +IF  M  K + P++F   S++  C+ VG L
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGAL 431

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           DL   + + + ++    +  +V + L+DM AK G +D A  +  T+   DVVS+ ++I G
Sbjct: 432 DLGEQIHTQVIKTGFQFN-VYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + H    +A+  F  ML+ G+  D + F+  ++AC+ +  +  G R   A   V     
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQG-RQIHAQSYVSGYSE 549

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                  +V L  R G +K AY     +  +   S W  L+
Sbjct: 550 DLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS-WNGLI 589



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 222/473 (46%), Gaps = 35/473 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  I+K G   +  L    + +  +L   L     VF  + N +   W+ ++ G+ + 
Sbjct: 31  KLHGKILKLGFGNESVLCNKLVDVYFALG-DLDGVVKVFEDMPNRSVRSWDKIISGFMEK 89

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS-HVLSVREGTAIHAAVIRWGVDEDVFV 173
                V  +F  +I E   P + +F  V++ACS H + +R    IHA +I  G+     +
Sbjct: 90  KMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPII 149

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-- 231
              LI LY K   I  ARKVFD +  ++ VSW AMI G++  G   EA  +F  M     
Sbjct: 150 SNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGI 209

Query: 232 --SNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
             +   +++++ G  KI       QL    F             ++  Y+++ +  SA  
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEK 269

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F     +D V++++LISG AQ G  D A+++F+ M    ++PD   + SL+SAC+  G 
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L     + SY+ ++ +  S   V  AL+D+   C ++  A E+F T    +VV +  M+ 
Sbjct: 330 LCKGEQLHSYVIKAGIS-SDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----------LVEDGWRF 454
                 +  ++  +F +M  +GL P++  +  +L  C+ VG           +++ G++F
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF 448

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                NVY         + ++D+  + G L +A+ +L ++  E    +W AL+
Sbjct: 449 -----NVYVC-------SVLIDMYAKHGKLDTAHVILRTL-TEDDVVSWTALI 488



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 186/382 (48%), Gaps = 14/382 (3%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  ++  C +  S+ E   +H  +++ G   +  +   L+D+Y    ++    KVF++M
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLV--KIGDLRS 251
           P R+V SW  +I G+           +F  M E     + +S+ +++      +IG +R 
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRY 130

Query: 252 ARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
           A Q+   +    +    +    +I  YAK G + SAR +F+    +D V+W A+ISG++Q
Sbjct: 131 AEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQ 190

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG  +EA+ +F +M +  + P  ++  S++S C+++   D+   + + + +    L   +
Sbjct: 191 NGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSL-ETY 249

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  ALV + ++  N   A ++F  M ++D VS+ S+I GL+  G    A+ LF +M  + 
Sbjct: 250 VCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDY 309

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           L PD V    +L+AC+  G +  G +    +     I         ++DL      +K+A
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIKTA 368

Query: 488 YELLNSMPVEPHASAWGALLGA 509
           +E+  +   E +   W  +L A
Sbjct: 369 HEMFLTAQTE-NVVLWNVMLVA 389


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/484 (38%), Positives = 288/484 (59%), Gaps = 12/484 (2%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P  F +N  ++ ++ +SR      +F+ ++R    PD YT P ++ A +   +     A 
Sbjct: 116 PTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA + + G++       SLI +Y    +   ARKVFD +P R+VVSW AM+  Y  VG  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKI-----GDLRSARQL----FDEMPERNVVSYTT 269
            E   +F  M +   V+ NA+   +V       GDL   R +    +    E + +  + 
Sbjct: 235 GEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSA 294

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  Y K G++  AR +F+   D+D+VAW+A+I+GYAQNG  +EA+ +F  M    ++PD
Sbjct: 295 LLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPD 354

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           +  L  ++SACS VG L+L + +D Y SR  +  S  +V  ALVDM AKCG++D+A E+F
Sbjct: 355 KITLAGVLSACSAVGALELGSELDGYASRRGL-YSNVYVGTALVDMYAKCGDLDKAIEVF 413

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLV 448
             MP ++V S+ ++I GL+ +G G +A+  F  M +E GL PD++ F  VL+AC H GLV
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           +DG R+F ++   + I+P  EHY+CMVDLL R+GHL+ A++ +  +P +  A   GALL 
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           AC+   ++E+GE V NR+ +LEP N+ +YV+ S IYA++DR  D   +R  M+ERG+ K 
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593

Query: 569 PGCS 572
           PGCS
Sbjct: 594 PGCS 597



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 33/382 (8%)

Query: 27  APINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           A   +P PS   +A  L+ K  L  H H VHS                 I++   L  P 
Sbjct: 161 AAARYPAPSLARAAHALLGKIGLNGHDHTVHS----------------LITMYSYLDDP- 203

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKA 145
             +  VF+ I   +   WN ++K Y +     EV  +F  +++E  V P+  T  +V+ A
Sbjct: 204 GAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAA 263

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C     +  G  +        ++ D  VG++L+ +Y K  EI+ AR+VFD + ++++V+W
Sbjct: 264 CRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAW 323

Query: 206 TAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
            AMI GYA  G   EA ++F  M      P++  ++   ++     +G L    +L    
Sbjct: 324 NAMITGYAQNGMSNEAISLFHSMRIAGMRPDK--ITLAGVLSACSAVGALELGSELDGYA 381

Query: 260 PER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
             R    NV   T ++D YAK GD+  A  +F   P ++V +W+ALI G A NG+ DEA+
Sbjct: 382 SRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAI 441

Query: 316 KIFSDMCS-KNVQPDEFILVSLMSACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALV 373
           + F  M + + ++PD+   + ++SAC   G + D   W +S L+     + +    + +V
Sbjct: 442 QHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNS-LTPEFQIIPKIEHYSCMV 500

Query: 374 DMNAKCGNMDRAAELFETMPNR 395
           D+ A+ G+++ A +  E +P++
Sbjct: 501 DLLARSGHLEEAWDFIEKIPDK 522


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/386 (43%), Positives = 247/386 (63%), Gaps = 5/386 (1%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR++F  MP R+VVSW  M+ G +  G + EAK VF  MP R++VSWNA++ G     D+
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 158

Query: 250 RSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
            +A + F   PE+ + V +T M+ GY  +G++  A   FEA P R++V+W+A+++GY +N
Sbjct: 159 SAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKN 218

Query: 309 GQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
              D+A+++F  M  + NVQP+   L S++  CS +  L     +  +  +  + LSR  
Sbjct: 219 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK--LPLSRNL 276

Query: 368 VIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  +LV M  KCG++  A +LF  M  RDVV++ +MI G + HG G++A++LF+RM  E
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G+ P+ + F  VLTAC H GL + G R FE MQ +Y I P  +HY+CMVDLL R G L+ 
Sbjct: 337 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A +L+ SMP EPH SA+G LL AC++Y ++E  EL A +L E +PQ+AG+YV L+NIYA 
Sbjct: 397 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAG 456

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
           A++W DV  VR  MK+  + K PG S
Sbjct: 457 ANQWDDVSRVRRWMKDNAVVKTPGYS 482



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 160/349 (45%), Gaps = 61/349 (17%)

Query: 92  VFNRIVNPNTFLWNTLL-----KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           +F+RI  P+   +NTLL      G +  +R         RL     V D  ++  ++   
Sbjct: 71  LFDRIPTPDAVSYNTLLSCHFASGDADGAR---------RLFASMPVRDVVSWNTMVSGL 121

Query: 147 SHVLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVS 204
           S   +V E  A+  A+ +R  V  +     +++  +   +++S A + F   PE+ + V 
Sbjct: 122 SKSGAVEEAKAVFLAMPVRNSVSWN-----AMVSGFACSRDMSAAEEWFRNAPEKGDAVL 176

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--- 261
           WTAM+ GY  +G++V+A   F+ MP R+ VSWNA++ G VK      A +LF  M     
Sbjct: 177 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 262 -------------------------------------RNVVSYTTMIDGYAKVGDMTSAR 284
                                                RN+   T+++  Y K GD++SA 
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 296

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LF     RDVVAW+A+ISGYAQ+G   EA+ +F  M  + V+P+    V++++AC   G
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             D        +   +    R    + +VD+  + G ++RA +L  +MP
Sbjct: 357 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 4   IDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKK 63
           + E N      + SS+L  CS  + + F K                     Q+H   +K 
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGK---------------------QIHQWCMKL 270

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
            L ++ ++    +S+ +     LS +  +F  +   +   WN ++ GY+Q+    E   +
Sbjct: 271 PLSRNLTVGTSLVSM-YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINL 329

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYG 182
           F R+  E   P+  TF  V+ AC H      G      +   +G++  V   + ++DL  
Sbjct: 330 FERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLC 389

Query: 183 KRKEISCARKVFDEMP 198
           +  ++  A  +   MP
Sbjct: 390 RAGKLERAVDLIRSMP 405


>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
 gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/487 (38%), Positives = 283/487 (58%), Gaps = 43/487 (8%)

Query: 128 IREEAVPDKYTFPLVIKACSHVL-SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           IR   V      PL+++AC+ V+  V  G  +H+  I++GV  DV VG+SLI +YGK   
Sbjct: 37  IRRRGVYFPGWVPLILRACACVVPRVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGC 96

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLV--------------------------- 219
           +  ARKVFDEMPERNV +W AMI GY S GD V                           
Sbjct: 97  VVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGK 156

Query: 220 -----EAKTVFDLMP-ERSNV-SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
                +A+ +F+ MP E  NV +W+ ++G  V    +  AR+ F+++PE+N   ++ M+ 
Sbjct: 157 RIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMS 216

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           GY ++GD+  AR++F     RD+V W+ LI+GYAQNG  D+A+  F +M  +  +PD   
Sbjct: 217 GYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVT 276

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           + S++SAC+Q G LD+   V S ++   ++L++  V  AL+DM AKCG+++ A  +FE++
Sbjct: 277 VSSILSACAQSGRLDVGREVHSLINHRGIELNQ-FVSNALIDMYAKCGDLENATSVFESI 335

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
             R V    SMI  L+IHG G++A+ +F  M S  L PDE+ F  VLTAC H G + +G 
Sbjct: 336 SVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGL 395

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           + F  M+    + P+ +H+ C++ LLGR+G LK AY L+  M V+P+ +  GALLGACK+
Sbjct: 396 KIFSEMKT-QDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKV 454

Query: 513 YSDIELGELVANRLFELEPQNAGSY-----VLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           + D E+ E V  ++ E       SY       +SN+YA  +RW     +R +M++RGL K
Sbjct: 455 HMDTEMAEQVM-KIIETAGSITNSYSENHLASISNLYAHTERWQTAEALRVEMEKRGLEK 513

Query: 568 IPGCSSL 574
            PG SSL
Sbjct: 514 SPGLSSL 520



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 38/258 (14%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + A+F R+   +  +WNTL+ GY+QN    +    F  +  E   PD  T   ++ AC+ 
Sbjct: 227 ARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQ 286

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
              +  G  +H+ +   G++ + FV  +LID+Y K  ++  A  VF+ +  R+V    +M
Sbjct: 287 SGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSM 346

Query: 209 IVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           I   A  G   EA  +F      DL P+   +++ A++   V  G L    ++F EM  +
Sbjct: 347 ISCLAIHGKGKEALEMFSTMESLDLKPDE--ITFIAVLTACVHGGFLMEGLKIFSEMKTQ 404

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           +V                             +V  +  LI    ++G+  EA ++  +M 
Sbjct: 405 DV---------------------------KPNVKHFGCLIHLLGRSGKLKEAYRLVKEM- 436

Query: 323 SKNVQPDEFILVSLMSAC 340
             +V+P++ +L +L+ AC
Sbjct: 437 --HVKPNDTVLGALLGAC 452



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VHS I  +G+E +  +    I + ++    L  +T+VF  I   +    N+++   + +
Sbjct: 295 EVHSLINHRGIELNQFVSNALIDM-YAKCGDLENATSVFESISVRSVACCNSMISCLAIH 353

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            +  E   +F  +   +  PD+ TF  V+ AC H   + EG  I + +    V  +V   
Sbjct: 354 GKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHF 413

Query: 175 TSLIDLYGKRKEISCARKVFDEM 197
             LI L G+  ++  A ++  EM
Sbjct: 414 GCLIHLLGRSGKLKEAYRLVKEM 436


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/484 (38%), Positives = 287/484 (59%), Gaps = 12/484 (2%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P  F +N  ++ ++ +SR      +F+ ++R    PD YT P ++ A +   +     A 
Sbjct: 116 PTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA + + G++       SLI +Y    +   ARKVFD +P R+VVSW AM+  Y  VG  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKI-----GDLRSARQL----FDEMPERNVVSYTT 269
            E   +F  M +   V+ N +   +V       GDL   R +    +    E + +  + 
Sbjct: 235 GEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSA 294

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  Y K G++  AR +F+   D+D+VAW+A+I+GYAQNG  +EA+ +F  M    ++PD
Sbjct: 295 LLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPD 354

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           +  L  ++SACS VG L+L + +D Y SR  +  S  +V  ALVDM AKCG++D+A E+F
Sbjct: 355 KITLAGVLSACSAVGALELGSELDGYASRRGL-YSNVYVGTALVDMYAKCGDLDKAIEVF 413

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLV 448
             MP ++V S+ ++I GL+ +G G +A+  F  M +E GL PD++ F  VL+AC H GLV
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           +DG R+F ++   + I+P  EHY+CMVDLL R+GHL+ A++ +  +P +  A   GALL 
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           AC+   ++E+GE V NR+ +LEP N+ +YV+ S IYA++DR  D   +R  M+ERG+ K 
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593

Query: 569 PGCS 572
           PGCS
Sbjct: 594 PGCS 597



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 33/382 (8%)

Query: 27  APINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           A   +P PS   +A  L+ K  L  H H VHS                 I++   L  P 
Sbjct: 161 AAARYPAPSLARAAHALLGKIGLNGHDHTVHS----------------LITMYSYLDDP- 203

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKA 145
             +  VF+ I   +   WN ++K Y +     EV  +F  +++E  V P+  T  +V+ A
Sbjct: 204 GAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAA 263

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C     +  G  +        ++ D  VG++L+ +Y K  EI+ AR+VFD + ++++V+W
Sbjct: 264 CRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAW 323

Query: 206 TAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
            AMI GYA  G   EA ++F  M      P++  ++   ++     +G L    +L    
Sbjct: 324 NAMITGYAQNGMSNEAISLFHSMRIAGMRPDK--ITLAGVLSACSAVGALELGSELDGYA 381

Query: 260 PER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
             R    NV   T ++D YAK GD+  A  +F   P ++V +W+ALI G A NG+ DEA+
Sbjct: 382 SRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAI 441

Query: 316 KIFSDMCS-KNVQPDEFILVSLMSACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALV 373
           + F  M + + ++PD+   + ++SAC   G + D   W +S L+     + +    + +V
Sbjct: 442 QHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNS-LTPEFQIIPKIEHYSCMV 500

Query: 374 DMNAKCGNMDRAAELFETMPNR 395
           D+ A+ G+++ A +  E +P++
Sbjct: 501 DLLARSGHLEEAWDFIEKIPDK 522


>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 286/511 (55%), Gaps = 38/511 (7%)

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           NP+   W+  ++  S N   ++   +  +  R +   D    P ++KAC     +    +
Sbjct: 15  NPSN--WSHSIRNNSTNQASLKRALVLYKQTRHDTTHDPTVIPQLLKACDSHPFLPYVKS 72

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA  I+ G D DVF+GT+++  Y K   +  ARKVFD MPERNVV+W AMI GY   GD
Sbjct: 73  LHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGD 132

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTMIDGYA 275
              A   F+ MP ++ VSW+ +IGG  + GD  +AR+ FD++P   ++VV +T M+DGYA
Sbjct: 133 AKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVMVDGYA 192

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSAL-------------------------------ISG 304
           K G+M  AR +FE  P+R+   WS++                               I+G
Sbjct: 193 KKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAG 252

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           Y QNG  ++A++ F +M     +PDEF +VS++SAC+Q+G+LD    +   +    + ++
Sbjct: 253 YVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVN 312

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
           +  V++ L+DM AKCG++  A  +FE+   R+V  + +MI G +++G   + +   DRM 
Sbjct: 313 Q-FVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQ 371

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
              +  D V F  VL+AC+H GL+ +       M+  Y I     HY CMVDLLGR G L
Sbjct: 372 ESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEE-YGIEMGIRHYGCMVDLLGRAGKL 430

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY-VLLSNI 543
           K AYEL+  MP++P+ +  GA++GAC ++SD+++ E V   +         S+ VLLSNI
Sbjct: 431 KEAYELIKRMPMKPNETVLGAMIGACWIHSDMKMAEQVMKMIGADSAACVNSHNVLLSNI 490

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           YA +++W    ++RS M + G  KIPG SS+
Sbjct: 491 YAASEKWEKAEMIRSSMVDGGSEKIPGYSSI 521



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + A+F RI   N  +WN+++ GY QN    +    F  +  +   PD++T   V+ AC+ 
Sbjct: 231 AEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQ 290

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G  +H  +   G+  + FV + LID+Y K  ++  AR VF+   ERNV  W AM
Sbjct: 291 LGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAM 350

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQLFDEMP--- 260
           I G+A  G   E     D M E SN+  +A     ++      G +  A ++  +M    
Sbjct: 351 IAGFAVNGQCNEVLEYLDRMQE-SNIRLDAVTFITVLSACAHGGLMSEALEVISKMEEYG 409

Query: 261 -ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
            E  +  Y  M+D   + G +  A  L +  P
Sbjct: 410 IEMGIRHYGCMVDLLGRAGKLKEAYELIKRMP 441



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  I  KG+  +  +++  I + ++    L  +  VF      N F WN ++ G++ N
Sbjct: 299 QMHHMIECKGIAVNQFVLSGLIDM-YAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVN 357

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            +  EV     R+       D  TF  V+ AC+H   + E   + + +  +G++  +   
Sbjct: 358 GQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEEYGIEMGIRHY 417

Query: 175 TSLIDLYGKRKEISCARKVFDEMPER 200
             ++DL G+  ++  A ++   MP +
Sbjct: 418 GCMVDLLGRAGKLKEAYELIKRMPMK 443


>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
          Length = 548

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/513 (36%), Positives = 290/513 (56%), Gaps = 48/513 (9%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK-YTFPLVI---KACSHVLSVREGTAI 158
           +W  L K Y+ NS   E   I+ +L+     P + +  PLVI   KA +       G A+
Sbjct: 23  MWANLAKVYASNSFLREAAIIYSKLL-----PHRTHHLPLVIVLLKATASRADPVLGRAL 77

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA  ++     D  VGT+L+ +Y K   ++ AR+VFD M +RN V+  AM+ GYA+ GD+
Sbjct: 78  HAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDM 137

Query: 219 VEAKTVFDLMPERSNVSWNALIGGL---------------------------------VK 245
           V A+ +F  M  R+ V+W  LI G                                  V 
Sbjct: 138 VSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVA 197

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            GD+ +AR+LF++MP RN   +++M+ G  K G+   A+++F+  P R++V W+ALI+GY
Sbjct: 198 AGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGY 257

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           A+ G  ++A++ F  M    ++PDEF +  ++SAC+Q+G+L+ +  V +++ + H     
Sbjct: 258 AKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQ-HRIRKN 316

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V+  LVDM AKCG++  A  +F+ M  R+   + SMI  LS HG   +A+ LF +M  
Sbjct: 317 QFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFSKMEC 376

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
               P+E+    VL AC+H G V++G R F    ++Y +  + EHY C+VDLLGR G L+
Sbjct: 377 SEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF-DIYGVAAAVEHYGCLVDLLGRAGRLR 435

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ----NAGSYVLLS 541
            AYE++ +M VEP+   WG+LLGAC+++ D E+ ELV++ + +L  +    N   Y+LLS
Sbjct: 436 EAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYILLS 495

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           NI A+++RW     +R KM   G+ K PGCSS+
Sbjct: 496 NIMASSERWEQAERMRRKMALHGVGKTPGCSSV 528



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 176/404 (43%), Gaps = 64/404 (15%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+  +K     D  +    +S+ +     L+ +  VF+ +++ N    N +L GY+   
Sbjct: 77  LHAEAVKSANAHDRLVGTTLVSV-YCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAG 135

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW------GVDE 169
             +    +F  +     V    T+  +I+  +       G    A   RW      G+ +
Sbjct: 136 DMVSAEALFAGMGSRTPV----TWATLIRGFA-------GKGDMAETRRWFEAMPLGM-Q 183

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           +V   T  +  Y    ++  AR++F++MP RN   W++M+ G    G+  EA+ VFD +P
Sbjct: 184 NVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIP 243

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPE---------------------------- 261
            R+ V+WNALI G  K+G    A + F  M +                            
Sbjct: 244 VRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARK 303

Query: 262 -----------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                      +N      ++D +AK GD+  AR++F+    R+   W+++IS  + +GQ
Sbjct: 304 VHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQ 363

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
             EA+++FS M     +P+E  L++++ AC+  G +D    + S      +  +  H   
Sbjct: 364 SIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEH-YG 422

Query: 371 ALVDMNAKCGNMDRAAELFETM---PNRDVVSYCSMIKGLSIHG 411
            LVD+  + G +  A E+ + M   PN   V + S++    +HG
Sbjct: 423 CLVDLLGRAGRLREAYEIVKNMLVEPNE--VIWGSLLGACRVHG 464



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 129/276 (46%), Gaps = 34/276 (12%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + AVF++I   N   WN L+ GY++     +    F  +++++  PD++T   V+ AC+ 
Sbjct: 235 AQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQ 294

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + S+ +   +H  +I+  + ++ FV   L+D++ K  +++ AR +FD M  RN   W +M
Sbjct: 295 LGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSM 354

Query: 209 IVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           I   +S G  +EA  +F  M     + + ++  A++G     G +    ++F +    ++
Sbjct: 355 ISALSSHGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF---DI 411

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                 ++ Y  + D+                          + G+  EA +I  +M   
Sbjct: 412 YGVAAAVEHYGCLVDL------------------------LGRAGRLREAYEIVKNML-- 445

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
            V+P+E I  SL+ AC   G+ ++S  V S + + H
Sbjct: 446 -VEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLH 480



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH+ II+  + ++  ++   + +  +    L+++  +F+ +   NT  WN+++   S +
Sbjct: 303 KVHNFIIQHRIRKNQFVMNGLVDM-FAKCGDLAFARNIFDNMQWRNTECWNSMISALSSH 361

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            + IE   +F ++   E  P++ T   V+ AC+H   V EG  I +    +GV   V   
Sbjct: 362 GQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEHY 421

Query: 175 TSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYASVGD 217
             L+DL G+   +  A ++   M  E N V W +++      GD
Sbjct: 422 GCLVDLLGRAGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGD 465



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 32/226 (14%)

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           RD   W+ L   YA N    EA  I+S +          ++V L +  S+          
Sbjct: 19  RDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVLLKATASR---------A 69

Query: 353 DSYLSRS-HMDL---SRAH---VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           D  L R+ H +    + AH   V   LV +  KCG +  A  +F+ M +R+ V+  +M+ 
Sbjct: 70  DPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLA 129

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA----MQNV 461
           G +  G    A +LF  M S   TP  V +  ++   +  G + +  R+FEA    MQNV
Sbjct: 130 GYAAAGDMVSAEALFAGMGSR--TP--VTWATLIRGFAGKGDMAETRRWFEAMPLGMQNV 185

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                + + Y          G +++A EL N MP   +A  W +++
Sbjct: 186 VTWTVAVQAYVA-------AGDMETARELFNKMPAR-NAFVWSSMV 223


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 316/549 (57%), Gaps = 20/549 (3%)

Query: 35  SCLL---SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           +C+L   +A   +++CK      +VH +++K G    +++V   I+  +     +  +  
Sbjct: 162 TCVLKGFAASAKVRECK------RVHGYVLKLGFGSYNAVVNSLIA-AYFKCGEVESARI 214

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ + + +   WN+++ G + N         F++++      D  T   V+ AC++V +
Sbjct: 215 LFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGN 274

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G A+HA  ++ G    V    +L+D+Y K   ++ A +VF +M E  +VSWT++I  
Sbjct: 275 LTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAA 334

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           +   G   EA  +FD M  +       +  +++        L   R++ + + + N+ S 
Sbjct: 335 HVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSN 394

Query: 267 ---YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                 +++ YAK G M  A  +F   P +++V+W+ +I GY+QN  P+EA+++F DM  
Sbjct: 395 LPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-Q 453

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           K ++PD+  +  ++ AC+ +  L+    +  ++ R     S  HV  ALVDM  KCG + 
Sbjct: 454 KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGY-FSDLHVACALVDMYVKCGLLV 512

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A +LF+ +P +D++ +  MI G  +HG G++A+S F++M   G+ P+E +FT +L AC+
Sbjct: 513 LAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACT 572

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+++GW+ F++M++   I P  EHYACMVDLL R+G+L  AY+ + +MP++P A+ W
Sbjct: 573 HSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIW 632

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GALL  C+++ D+EL E VA  +FELEP+N   YVLL+N+YA A++W +V  ++ ++ + 
Sbjct: 633 GALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKG 692

Query: 564 GLRKIPGCS 572
           GL+   GCS
Sbjct: 693 GLKNDQGCS 701



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 232/467 (49%), Gaps = 16/467 (3%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L L  + K      +VHS I   G+  D  L A  + + +     L     +F+ I+N
Sbjct: 62  SVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFM-YVNCGDLVKGRRIFDGILN 120

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
              FLWN L+  Y++   + E   +F ++       D YTF  V+K  +    VRE   +
Sbjct: 121 DKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRV 180

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V++ G      V  SLI  Y K  E+  AR +FDE+ +R+VVSW +MI G    G  
Sbjct: 181 HGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFS 240

Query: 219 VEAKTVF-DLMPERSNVSWNALIGGLV---KIGDLRSARQLFDEMPER----NVVSYTTM 270
                 F  ++    +V    L+  LV    +G+L   R L     +      V+   T+
Sbjct: 241 RNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTL 300

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +D Y+K G++  A  +F    +  +V+W+++I+ + + G   EA+ +F +M SK ++PD 
Sbjct: 301 LDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDI 360

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
           + + S++ AC+   +LD    V +++ +++M  S   V  AL++M AKCG+M+ A  +F 
Sbjct: 361 YAVTSVVHACACSNSLDKGREVHNHIKKNNMG-SNLPVSNALMNMYAKCGSMEEANLIFS 419

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            +P +++VS+ +MI G S +    +A+ LF  M  + L PD+V    VL AC+ +  +E 
Sbjct: 420 QLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEK 478

Query: 451 GWRFF-EAMQNVYAIVPSPEHYAC-MVDLLGRTGHLKSAYELLNSMP 495
           G       ++  Y    S  H AC +VD+  + G L  A +L + +P
Sbjct: 479 GREIHGHILRKGYF---SDLHVACALVDMYVKCGLLVLAQQLFDMIP 522



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 192/382 (50%), Gaps = 15/382 (3%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  V++ C+ + S+ +G  +H+ +   G+  D  +G  L+ +Y    ++   R++FD +
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSAR 253
               +  W  ++  YA +G+  E+  +F+ M E      + ++  ++ G      +R  +
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178

Query: 254 QLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           ++   + +    SY     ++I  Y K G++ SAR LF+   DRDVV+W+++ISG   NG
Sbjct: 179 RVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNG 238

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
                ++ F  M +  V  D   LV+++ AC+ VGNL L   + +Y  ++          
Sbjct: 239 FSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFS-GGVMFN 297

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
             L+DM +KCGN++ A E+F  M    +VS+ S+I      G   +A+ LFD M S+GL 
Sbjct: 298 NTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLR 357

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQ--NVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           PD  A T V+ AC+    ++ G      ++  N+ + +P       ++++  + G ++ A
Sbjct: 358 PDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSN---ALMNMYAKCGSMEEA 414

Query: 488 YELLNSMPVEPHASAWGALLGA 509
             + + +PV+   S W  ++G 
Sbjct: 415 NLIFSQLPVKNIVS-WNTMIGG 435


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/523 (34%), Positives = 296/523 (56%), Gaps = 46/523 (8%)

Query: 92  VFNRIVNPNTFL---WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +F+ +  P   L   + ++L   S +   IE  +   R  R  A+P     PLV+K+C+ 
Sbjct: 34  LFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHR--RGGAIPSG-CIPLVLKSCAL 90

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             +  +GT  H   +  G+  DVFV T+L+D Y K   +  A   F+EMP ++ +    +
Sbjct: 91  SAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCL 150

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE------- 261
           I GY+  GD+ EA+ +FD MP +++ SWN++I      G+ + A  LFD+M         
Sbjct: 151 ITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNA 210

Query: 262 -------------------------------RNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                                          +NV+ +T +++ Y K   +  AR  F+  
Sbjct: 211 ITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRM 270

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P RDVVAWS +I+GY+ NG+P E++++F  M + N +P+E  LV ++SAC+Q+G+ +L  
Sbjct: 271 PRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGE 330

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            + SY+    + L+ +++ +AL+DM  KCG++ RA ++F  M  + V+++ SMI+GL+++
Sbjct: 331 QIGSYIESQTLPLT-SYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALN 389

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ-NVYAIVPSPE 469
           G    A++L+  M+ +G+ P+E+ F  +LTAC+H GLV+ G  FF+ M+ N     P  E
Sbjct: 390 GFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVE 449

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           H AC+VDLL ++G L  AY+ +  M VEP+A  W  LL AC+ ++D+EL +L A +L  L
Sbjct: 450 HCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVL 509

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EP ++  YVLLSNIYA A  W DV  +R  M+ + L+K+   S
Sbjct: 510 EPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYS 552



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 87/217 (40%), Gaps = 39/217 (17%)

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSAC 340
           +AR LF+A P        A +S  ++     E ++  S +  +    P   I + L S  
Sbjct: 30  AARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCA 89

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
               +   +      L R    L    V  ALVD  AK GNMD A   FE MP +D +  
Sbjct: 90  LSAASCQGTQTHCHALVRGM--LGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPM 147

Query: 401 CSMIKGLSIHG----------------------------HG---RQAVSLFDRMLSEGLT 429
             +I G S  G                            HG   ++A++LFD+ML EG +
Sbjct: 148 NCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS 207

Query: 430 PDEVAFTIVLTACSHVGLVEDG-----WRFFEAMQNV 461
           P+ +  T V + C+  G +E G     W   E +QNV
Sbjct: 208 PNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNV 244


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/484 (38%), Positives = 287/484 (59%), Gaps = 12/484 (2%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P  F +N  ++ ++ +SR      +F+ ++R    PD YT P ++ A +   +     A 
Sbjct: 116 PTAFSYNVAIRFFA-SSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA + + G++       SLI +Y    +   ARKVFD +P R+VVSW AM+  Y  VG  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKI-----GDLRSARQL----FDEMPERNVVSYTT 269
            E   +F  M +   V+ N +   +V       GDL   R +    +    E + +  + 
Sbjct: 235 GEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVGSA 294

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  Y K G++  AR +F+   D+D+VAW+A+I+GYAQNG  +EA+ +F  M    ++PD
Sbjct: 295 LLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPD 354

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           +  L  ++SACS VG L+L + +D Y SR  +  S  +V  ALVDM AKCG++D+A E+F
Sbjct: 355 KITLAGVLSACSAVGALELGSELDGYASRRGL-YSNVYVGTALVDMYAKCGDLDKAIEVF 413

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLV 448
             MP ++V S+ ++I GL+ +G G +A+  F  M +E GL PD++ F  VL+AC H GLV
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           +DG R+F ++   + I+P  EHY+CMVDLL R+GHL+ A++ +  +P +  A   GALL 
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           AC+   ++E+GE V NR+ +LEP N+ +YV+ S IYA++DR  D   +R  M+ERG+ K 
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593

Query: 569 PGCS 572
           PGCS
Sbjct: 594 PGCS 597



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 33/382 (8%)

Query: 27  APINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           A   +P PS   +A  L+ K  L  H H VHS                 I++   L  P 
Sbjct: 161 AAARYPAPSLARAAHALLGKIGLNGHDHTVHS----------------LITMYSYLDDP- 203

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKA 145
             +  VF+ I   +   WN ++K Y +     EV  +F  +++E  V P+  T  +V+ A
Sbjct: 204 GAARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAA 263

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C     +  G  +        ++ D  VG++L+ +Y K  EI+ AR+VFD + ++++V+W
Sbjct: 264 CRDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAW 323

Query: 206 TAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
            AMI GYA  G   EA ++F  M      P++  ++   ++     +G L    +L    
Sbjct: 324 NAMITGYAQNGMSNEAISLFHSMRIAGMRPDK--ITLAGVLSACSAVGALELGSELDGYA 381

Query: 260 PER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
             R    NV   T ++D YAK GD+  A  +F   P ++V +W+ALI G A NG+ DEA+
Sbjct: 382 SRRGLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAI 441

Query: 316 KIFSDMCS-KNVQPDEFILVSLMSACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALV 373
           + F  M + + ++PD+   + ++SAC   G + D   W +S L+     + +    + +V
Sbjct: 442 QHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNS-LTPEFQIIPKIEHYSCMV 500

Query: 374 DMNAKCGNMDRAAELFETMPNR 395
           D+ A+ G+++ A +  E +P++
Sbjct: 501 DLLARSGHLEEAWDFIEKIPDK 522


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/590 (33%), Positives = 303/590 (51%), Gaps = 101/590 (17%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ---NSRFIEVFTIFVRLIREEAVPDK 136
           H   +P       F+ I N + + WN ++ GY +   +S  I  F++F  ++     PD 
Sbjct: 29  HVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDY 86

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
            TFP V+KAC  V+   +G  IH   +++G   DV+V  SLI LY + K +  AR +FDE
Sbjct: 87  RTFPSVLKACRTVI---DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE 143

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKT--------------------------------- 223
           MP R++ SW AMI GY   G+  EA T                                 
Sbjct: 144 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIH 203

Query: 224 ------------------VFDLMPERSNVSWNALIGG----------------------- 242
                             VFD M  R  +SWN++I                         
Sbjct: 204 SYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ 263

Query: 243 ------------LVKIGDLRSARQLFDEMPER-----NVVSYTTMIDGYAKVGDMTSARS 285
                       L ++GD+R+ R +      +     ++     ++  YAK+G + SAR+
Sbjct: 264 PDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 323

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVG 344
           +F   P+ DV++W+ +ISGYAQNG   EA+++++ M  +  +  ++   VS++ ACSQ G
Sbjct: 324 VFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAG 383

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            L     +   L ++ + L    V+ +L DM  KCG ++ A  LF  +P  + V + ++I
Sbjct: 384 ALRQGMKLHGRLLKNGLYLD-VFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 442

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
                HGHG +AV LF  ML EG+ PD + F  +L+ACSH GLV++G   FE MQ  Y I
Sbjct: 443 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGI 502

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            PS +HY CMVD+ GR G L++A + + SM ++P AS WGALL AC+++ +++LG++ + 
Sbjct: 503 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 562

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            LFE+EP++ G +VLLSN+YA+A +W  V  +RS    +GLRK PG SS+
Sbjct: 563 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSM 612


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/486 (36%), Positives = 273/486 (56%), Gaps = 16/486 (3%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N F +N ++ G+  N    E F  + ++  E  +PDK+TFP  IKAC  VL +++   IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKK---IH 159

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             + ++G++ DVF+G++L++ Y K   +  A+  F+E+P R+VV W AM+ GYA +G   
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKI----GDLRSARQL----FDEMPERNVVSYTTMI 271
                F  M + S V     + G + +    GDL + R +         +  V    ++I
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLI 279

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K   +  A  +FE   ++D+ +W++++S + Q G  D  +++   M    +QPD  
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 332 ILVSLMSACSQVGNLDLSNWVDSY-----LSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            + +++ ACS +  L     +  Y     L +   D+    +  A++DM AKCG+M  A 
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +FE M N+DV S+  MI G  +HG+G +A+ +F RM    L PDEV F  VL+ACSH G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            V  G  F   M++ Y + P+ EHY C++D+LGR G L  AYEL  +MP+E +   W AL
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           L AC+L+    L E+ A R+FELEP++ GSYVL+SN+Y    R+ +V  VR  M+++ +R
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 567 KIPGCS 572
           K PGCS
Sbjct: 580 KTPGCS 585



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 184/390 (47%), Gaps = 28/390 (7%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           IK C     + ++H  + K GLE D  + +  ++ C+     + ++   F  +   +  L
Sbjct: 146 IKACLDVLEIKKIHGLLFKFGLELDVFIGSALVN-CYLKFGLMEHAQVAFEELPIRDVVL 204

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++ GY+Q  +F  V   F R+  E  VP ++T    +   + +  +  G  IH   +
Sbjct: 205 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAM 264

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------- 216
           + G D  V V  SLID+YGK K I  A ++F+ M E+++ SW +++  +   G       
Sbjct: 265 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLR 324

Query: 217 ------------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
                       DLV   TV       + +     I G + +  L    +  D++  +N 
Sbjct: 325 LLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNA 384

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V     ID YAK G M  A  +FE   ++DV +W+ +I GY  +G  +EA+++FS MC  
Sbjct: 385 V-----IDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV 439

Query: 325 NVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
            ++PDE   V ++SACS  G +    N++    S+  +  +  H    ++DM  + G +D
Sbjct: 440 QLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEH-YTCVIDMLGRAGQLD 498

Query: 384 RAAELFETMP-NRDVVSYCSMIKGLSIHGH 412
            A EL  TMP   + V + +++    +H H
Sbjct: 499 EAYELALTMPIEANPVVWRALLAACRLHKH 528


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 317/580 (54%), Gaps = 51/580 (8%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNR 95
            L+   K + + +  Q+H  I+K G  +D    +SLV HF + C  L +    +  VF+ 
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV-HFYAECGELDS----ARKVFDE 194

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVRE 154
           +   N   W +++ GY++     +   +F R++R EE  P+  T   VI AC+ +  +  
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  ++A +   G++ +  + ++L+D+Y K   I  A+++FDE    N+    AM   Y  
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 215 VGDLVEAKTVFDLM------PER-------------SNVSW------------------- 236
            G   EA  VF+LM      P+R              N+ W                   
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NALI   +K     +A ++FD M  + VV++ +++ GY + G++ +A   FE  P++++
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           V+W+ +ISG  Q    +EA+++F  M S+  V  D   ++S+ SAC  +G LDL+ W+  
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ ++ + L    +   LVDM ++CG+ + A  +F ++ NRDV ++ + I  +++ G+  
Sbjct: 495 YIEKNGIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAE 553

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ LFD M+ +GL PD VAF   LTACSH GLV+ G   F +M  ++ + P   HY CM
Sbjct: 554 RAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCM 613

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G L+ A +L+  MP+EP+   W +LL AC++  ++E+    A ++  L P+  
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           GSYVLLSN+YA+A RW D+  VR  MKE+GLRK PG SS+
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 254/530 (47%), Gaps = 49/530 (9%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           +L   + + P    +  C  +  + +K CK    L   H  + K+GL+ D S +   ++ 
Sbjct: 14  VLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVAR 73

Query: 79  CHSLAT--PLSYSTAVFNRIVNPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
              L T   LS++  VF    +  T F++N+L++GY+ +    E   +F+R++     PD
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
           KYTFP  + AC+   +   G  IH  +++ G  +D+FV  SL+  Y +  E+  ARKVFD
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLR 250
           EM ERNVVSWT+MI GYA      +A  +F  M     V+ N+     +I    K+ DL 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 251 SARQLF----DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           +  +++    +   E N +  + ++D Y K   +  A+ LF+     ++   +A+ S Y 
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           + G   EA+ +F+ M    V+PD   ++S +S+CSQ+ N+        Y+ R+  + S  
Sbjct: 314 RQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE-SWD 372

Query: 367 HVIAALVDMNAKC-------------------------------GNMDRAAELFETMPNR 395
           ++  AL+DM  KC                               G +D A E FETMP +
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHVGLVE-DGWR 453
           ++VS+ ++I GL       +A+ +F  M S EG+  D V    + +AC H+G ++   W 
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           ++   +N   I         +VD+  R G  +SA  + NS+      SAW
Sbjct: 493 YYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL-TNRDVSAW 539


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/551 (32%), Positives = 313/551 (56%), Gaps = 18/551 (3%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           + ++ ++KCK    L Q+HS +I   + ++    +  I  C +S    + Y+  VF++I 
Sbjct: 7   TVMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQIN 66

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
               ++WN+++KGY           ++  + R+   PD +TFP V+K CS +  +  G +
Sbjct: 67  QRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQS 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  +++ G + DV+  + L+++Y    +++   KVF+ +P+ NVV+WT++I G+ +   
Sbjct: 127 VHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQ 186

Query: 218 LVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSA-------RQL----FDEMPER 262
             EA  +F  M     E + ++    +    +  D+ +        RQL    FD     
Sbjct: 187 PKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCF 246

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           NV+  T ++D YAK G + +AR+LF+  P R++V W+++IS Y+Q G+  EA+++F DM 
Sbjct: 247 NVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDME 306

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
                P++   +S++SAC+ +G       + +   R+      A +  AL+DM AK G+ 
Sbjct: 307 MAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVA-IGTALMDMYAKAGDA 365

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTA 441
           D A ++F  +  +DV+++ +MI GL+I G G++A+++F RM  E  + PD++ +  VL A
Sbjct: 366 DTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWA 425

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH+GLVE+G + F +M  VY I P+ EHY CM+DLL R GH K A ELL  MP +P+A+
Sbjct: 426 CSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNAT 485

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
              ++L  C++Y ++ L   V + + ELE  ++G YVLLSNI+A A  W ++ L R  +K
Sbjct: 486 ILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKLARDMLK 545

Query: 562 ERGLRKIPGCS 572
            + + K  G S
Sbjct: 546 HKNIGKTLGNS 556


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/523 (35%), Positives = 294/523 (56%), Gaps = 41/523 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGYS 112
           Q+H+ ++ +GL          ++L  S ++P  Y+ A+F+ +   + N +LW   +  Y+
Sbjct: 26  QLHAQLLLRGLPLPARAA---VTLIASSSSP-QYARAIFDSVPAASANVYLWTATVSSYA 81

Query: 113 QNSR---FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           +++      E F +F+ ++R    P+ +T   V+K+ S + +  +   +H  +++ G+  
Sbjct: 82  KHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLAS 141

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
            + VG +L+D YG    +  AR+VF                               D MP
Sbjct: 142 SLHVGATLLDSYGNLCRVKDARRVF-------------------------------DEMP 170

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
             + V  NA++ G VK GD+ +ARQ+FD M ER+ +S+ T++ GY + GD   AR LF+ 
Sbjct: 171 RSNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDE 230

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            P R+V +W+ +IS  ++ G   ++V +F+ M   + +PD   +  LMSAC+Q+G L ++
Sbjct: 231 MPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVA 290

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             V   L +  ++++  HV  +LVDM AKCG    A  LF  M  +DVVSY  M+  L+ 
Sbjct: 291 RQVYGLLRKGCVEMN-CHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAH 349

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HGHG+ A+ LF++M+  GL PD V F  VL+AC+H GLV+ G  +FE M   YAI  S +
Sbjct: 350 HGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSAD 409

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYACMVDL GR G ++ A+  +  MPV+PHA  WGALL AC+ + +I++GE+ A  L  +
Sbjct: 410 HYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRI 469

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           EP N G+YVLLSN  A + +W  V  VR  M+  G+ K  G S
Sbjct: 470 EPMNPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFS 512


>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
          Length = 572

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 284/511 (55%), Gaps = 38/511 (7%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV-REGTAIH 159
           TFL N L++  + +      F  F  L+R   +PD +TFP + K+ S   S  R G  +H
Sbjct: 57  TFLHNLLIRASAASPSPRLSFAAFSSLLRSGHLPDHFTFPPLAKSASKFPSFPRTGAQVH 116

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRK--------------------------------EI 187
           A   R G+  D F   SL+ +Y   +                                E+
Sbjct: 117 AQAARRGLLADAFAVNSLLAMYAALRDAASMRGVLESCAEAADVVSWNTVVAGYARCGEL 176

Query: 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVK 245
             AR+ FD MP RN  SW+AM+  YA+ G L  A+ +FD  P   RS V+WN+++ GL +
Sbjct: 177 GNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAPAAGRSVVTWNSMVAGLAR 236

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  AR++FDEMP RN+VS+  M+ GYA  GD+  AR LF+A P++DVV+W+ ++SGY
Sbjct: 237 HGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGY 296

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           A+ G+  +A+++F  M S +V+P+E  +VS+ SAC+++  L    W  +++ +  M L  
Sbjct: 297 ARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDD 356

Query: 366 A-HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
             ++ AAL+DM AKCG  D AA++F ++  ++V ++ ++I GL+ +G  R+ + +F++M 
Sbjct: 357 GFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMK 416

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
                PD V F  VL AC+  GLV++G R F +M + + + P  +HY CMVDLLGR G +
Sbjct: 417 VSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLV 476

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG--SYVLLSN 542
             A EL+  MP+ P       LLGAC++    ++ E V  R+  L  +     SY ++S+
Sbjct: 477 DEAEELVRGMPMAPDDKVLATLLGACRVRRRPDVAERVRRRIQSLNTKQPSRESYFMISD 536

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
           + ATADRW      +  M +  + K+ G  S
Sbjct: 537 VRATADRWAVALKAKGFMHKYNIMKLDGSGS 567


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 208/582 (35%), Positives = 309/582 (53%), Gaps = 56/582 (9%)

Query: 27  APINFPKP---SCLLSALTLIKKCK---------LQTHLHQVHSHIIKKGLEQDHSLVAH 74
           A + FP P   S   +A +L   C              L  +H+  +  G   D+ + + 
Sbjct: 104 ADLLFPSPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASA 163

Query: 75  FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV- 133
              L  +L+   + +  VF+ + +P+T LWNTLL G S +    E    FVR+    +V 
Sbjct: 164 LAKLYFTLSRG-NDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVR 218

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PD  T   V+ A + V +   G  +HA   + G+ +   V T LI LY K  ++ CAR +
Sbjct: 219 PDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHL 278

Query: 194 FDEMPERNVVSWTAMIVGYA---SVGDLVE-------------AKTVFDLMPERSNVSWN 237
           FD M   ++V++ A+I GY+    VG  VE             + T+  L+P  S     
Sbjct: 279 FDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHE 338

Query: 238 ALIGGL----VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
            L G L    VK G             + N    T +   Y +  DM SAR  F+A P++
Sbjct: 339 PLAGCLHAHVVKAG------------LDANAPVSTALTTLYCRFNDMDSARRAFDAMPEK 386

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
            + +W+A+ISGYAQNG  + AV +F  M + NV+P+   + S +SAC+Q+G L L  WV 
Sbjct: 387 TMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVH 446

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
             ++   ++L+  +V+ AL+DM  KCG++  A  +F++M N++VVS+  MI G  +HG G
Sbjct: 447 KIIANEKLELN-VYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQG 505

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A+ L+  M+   L P    F  VL ACSH GLV++G   F +M + Y I P  EH  C
Sbjct: 506 AEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTC 565

Query: 474 MVDLLGRTGHLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           MVDLLGR G LK A+EL++  P   V P    WGALLGAC ++ D +L +L + +LFELE
Sbjct: 566 MVDLLGRAGQLKEAFELISEFPKSAVGP--GIWGALLGACMVHKDGDLAKLASQKLFELE 623

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           P+N G YVLLSN+Y +  ++ +  +VR + K R L K PGC+
Sbjct: 624 PENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCT 665



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 232/515 (45%), Gaps = 62/515 (12%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           S L LI       HL Q+ +  +  G    DH+  +  +    SL +P ++   ++    
Sbjct: 26  SYLRLISLSSTLGHLDQLLAVSLASGHYTLDHAPASSLLLRYASLRSPPAHLLRLYRAFP 85

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P+ FL N+LL+          + T+   L+     PD ++F     + +   S R G +
Sbjct: 86  RPDRFLRNSLLR---------SLPTLRADLLFPS--PDSFSFAFAATSLASSCS-RGGIS 133

Query: 158 -----------IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
                      +HA  +  G   D FV ++L  LY      + ARKVFD +P  + V W 
Sbjct: 134 PPSAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWN 193

Query: 207 AMIVGYA---SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR--QLFDE--- 258
            ++ G +   ++   V       + P+ + ++  +++    ++ +    R    F E   
Sbjct: 194 TLLAGLSGSEALEAFVRMAGAGSVRPDSTTLA--SVLPAAAEVANTTMGRCVHAFGEKCG 251

Query: 259 -MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                +VV  T +I  YAK GDM  AR LF+     D+V ++ALISGY+ NG    +V++
Sbjct: 252 LAQHEHVV--TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVEL 309

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F ++    ++P    LV+L+   S  G+  L+  + +++ ++ +D + A V  AL  +  
Sbjct: 310 FKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLD-ANAPVSTALTTLYC 368

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           +  +MD A   F+ MP + + S+ +MI G + +G    AV+LF +M +  + P+ +  + 
Sbjct: 369 RFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISS 428

Query: 438 VLTACSHVGLVEDGWRFFEAMQ------NVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            L+AC+ +G +  G    + +       NVY +         ++D+  + G +  A  + 
Sbjct: 429 ALSACAQLGALSLGKWVHKIIANEKLELNVYVMT-------ALIDMYVKCGSIAEARCIF 481

Query: 492 NSMPVEPHASAWGALLG----------ACKLYSDI 516
           +SM    +  +W  ++           A KLY D+
Sbjct: 482 DSMD-NKNVVSWNVMISGYGLHGQGAEALKLYKDM 515


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 295/487 (60%), Gaps = 8/487 (1%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNS----RFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           +VF ++   +   W TL+ G+S+N     + +E+F + +R    E  P+++TF  V++AC
Sbjct: 225 SVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMR--SGETTPNEFTFDCVVRAC 282

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
             +  +  G  +H  +++ G++ D  +G +L++ Y + + I  A +V   +    + +  
Sbjct: 283 GRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALN 342

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           ++I G  S+G + +A+ VF+ M E + VS+N +I G    G +  +++LF++MP R + S
Sbjct: 343 SLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFS 402

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             TMI  Y++ G++  A  LFE    ++D V W+++ISGY  +GQP+EA+K++  M   +
Sbjct: 403 SNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLS 462

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           +Q       +L  ACS +G+L     + ++L ++  + S  +V  +L+DM +KCG++  A
Sbjct: 463 IQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFE-SNVYVGTSLIDMYSKCGSIMEA 521

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
              F ++ + +V ++ ++I G + HG G +A+SLFD M+ +GL P+   F  VL+ACS  
Sbjct: 522 QTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRA 581

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV +G + F +M+  Y++ P+ EHYAC+VDLLGR+GH++ A E +  MP+E     WGA
Sbjct: 582 GLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGA 641

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LL AC  + D+E+GE VA ++F  +P+   SYV+LSNIYA   RW +  +VR  ++   +
Sbjct: 642 LLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKV 701

Query: 566 RKIPGCS 572
           +K PGCS
Sbjct: 702 KKDPGCS 708



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 206/471 (43%), Gaps = 59/471 (12%)

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
           + L  +  +F+++       WNT++  YS++ RF E   +   + R      + TF  V+
Sbjct: 86  SKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVL 145

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
             C+ +  +R+G  IH  V++ G +    VG++L+  Y    EI  AR+VFD +  RN V
Sbjct: 146 SVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEV 205

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD-LRSARQLFDEMPER 262
            W+ M+VGY +   + +A +VF  MP R  V+W  LI G  K GD    A ++F  M   
Sbjct: 206 LWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRS 265

Query: 263 -----NVVSYTTMIDGYAKVGDMTSARS----LFEAAPDRDVVAWSALISGYAQNGQPDE 313
                N  ++  ++    ++G ++  R+    L +   + D     AL+  Y +    D+
Sbjct: 266 GETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDD 325

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV----------------DSYLS 357
           A+++    C   V P    L SL+     +G ++ +  V                  Y  
Sbjct: 326 ALRV----CKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAV 381

Query: 358 RSHMDLSR-------AHVIAA---LVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKG 406
              MD S+          I +   ++ + ++ G +D+A ELFE   N +D V++ SMI G
Sbjct: 382 GGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISG 441

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF--------FEAM 458
               G   +A+ L+  M    +      F+ +  ACS +G ++ G           FE+ 
Sbjct: 442 YIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFES- 500

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            NVY           ++D+  + G +  A     S+   P+ +AW AL+  
Sbjct: 501 -NVYVGTS-------LIDMYSKCGSIMEAQTSFVSI-FSPNVAAWTALING 542


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 274/481 (56%), Gaps = 9/481 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   N   W  ++KGY Q     E  ++F R+     V     F  +I     +  
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD-GRIDK 159

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
            R+   +          +DV   T++I    +   +  AR +FDEM ERNVV+WT MI G
Sbjct: 160 ARKLYDMMPV-------KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITG 212

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y     +  A+ +F++MPE++ VSW +++ G    G +  A + F+ MP + V++   MI
Sbjct: 213 YRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMI 272

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            G+ +VG+++ AR +F+   DRD   W  +I  Y + G   EA+ +F+ M  + V+P   
Sbjct: 273 VGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFP 332

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            L+S++S C+ + +L     V ++L R   D    +V + L+ M  KCG + +A  +F+ 
Sbjct: 333 SLISILSVCATLASLQYGRQVHAHLVRCQFD-DDVYVASVLMTMYVKCGELVKAKLVFDR 391

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
             ++D++ + S+I G + HG G +A+ +F  M S G  P++V    +LTACS+ G +E+G
Sbjct: 392 FSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG 451

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
              FE+M++ + + P+ EHY+C VD+LGR G +  A EL+ SM ++P A+ WGALLGACK
Sbjct: 452 LEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACK 511

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
            +S ++L E+ A +LFE EP NAG+YVLLS+I A+  +W DV +VR  M+   + K PGC
Sbjct: 512 THSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGC 571

Query: 572 S 572
           S
Sbjct: 572 S 572



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 153/284 (53%), Gaps = 9/284 (3%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + +V     L+  Y K + I  AR VF+ MPERNVVSWTAM+ GY   G + EA+++F  
Sbjct: 76  ERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWR 135

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MPER+ VSW  + GGL+  G +  AR+L+D MP ++VV+ T MI G  + G +  AR +F
Sbjct: 136 MPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIF 195

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   +R+VV W+ +I+GY QN + D A K+F  M  K     E    S++   +  G ++
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRIE 251

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                D+      M +       A++    + G + +A  +F+ M +RD  ++  MIK  
Sbjct: 252 -----DAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAY 306

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              G   +A+ LF +M  +G+ P   +   +L+ C+ +  ++ G
Sbjct: 307 ERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 165/343 (48%), Gaps = 27/343 (7%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I+ ARK FD +  + + SW +++ GY S G   EA+ +FD M ER+ VSWN L+ G +K
Sbjct: 32  KINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIK 91

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
              +  AR +F+ MPERNVVS+T M+ GY + G +  A SLF   P+R+ V+W+ +  G 
Sbjct: 92  NRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL 151

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
             +G+ D+A K++  M  K+V          +++ + +G L     VD   +R   D  R
Sbjct: 152 IDDGRIDKARKLYDMMPVKDV----------VASTNMIGGLCREGRVDE--ARLIFDEMR 199

Query: 366 AHVIAALVDM---NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
              +     M     +   +D A +LFE MP +  VS+ SM+ G ++ G    A   F+ 
Sbjct: 200 ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEV 259

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M  + +    +A   ++     VG +    R F+ M++          +  M+    R G
Sbjct: 260 MPMKPV----IACNAMIVGFGEVGEISKARRVFDLMED-----RDNATWRGMIKAYERKG 310

Query: 483 HLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELV 522
               A +L   M    V P   +  ++L  C   + ++ G  V
Sbjct: 311 FELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQV 353



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 169/358 (47%), Gaps = 61/358 (17%)

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
           + +G + EA+  FD +  ++  SWN+++ G    G  + ARQLFDEM ERNVVS+  ++ 
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           GY K   +  AR++FE  P+R+VV+W+A++ GY Q G   EA  +F  M  +N       
Sbjct: 88  GYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERN------- 140

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
                                        ++S   +   L+D     G +D+A +L++ M
Sbjct: 141 -----------------------------EVSWTVMFGGLID----DGRIDKARKLYDMM 167

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P +DVV+  +MI GL   G   +A  +FD M    +    V +T ++T       V+   
Sbjct: 168 PVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVAR 223

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRT--GHLKSAYELLNSMPVEPHASAWGALLGAC 510
           + FE M       P     +    LLG T  G ++ A E    MP++P  +    ++G  
Sbjct: 224 KLFEVM-------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFG 276

Query: 511 KLYSDIELGELV-ANRLFEL-EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
                 E+GE+  A R+F+L E ++  ++  +   Y      L+   + ++M+++G+R
Sbjct: 277 ------EVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVR 328



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 167/381 (43%), Gaps = 62/381 (16%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S +  VF+ + + +   W  ++K Y +    +E   +F ++ ++   P   +   ++  
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + S++ G  +HA ++R   D+DV+V + L+ +Y K  E+  A+ VFD    ++++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
            ++I GYAS G   EA  +F  MP      + V+  A++      G L    ++F+ M  
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMES 460

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           +  V+ T  ++ Y+   DM                          + GQ D+A+++   M
Sbjct: 461 KFCVTPT--VEHYSCTVDM------------------------LGRAGQVDKAMELIESM 494

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
               ++PD  +  +L+ AC     LDL+      L  +  D +  +V+  L  +NA    
Sbjct: 495 ---TIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVL--LSSINASRSK 549

Query: 382 MDRAAELFETMPNRDVVSY--CSMIK-GLSIH--------GHGRQAVSLF-----DRMLS 425
               A + + M   +V  +  CS I+ G  +H         H  QA+ L      D +L 
Sbjct: 550 WGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLR 609

Query: 426 E-GLTPDEVAFTIVLTACSHV 445
           E G +PD          CSHV
Sbjct: 610 EAGYSPD----------CSHV 620



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S L++        +  QVH+H+++   + D   VA  +   +     L  +  
Sbjct: 329 PSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDD-VYVASVLMTMYVKCGELVKAKL 387

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+R  + +  +WN+++ GY+ +    E   IF  +     +P+K T   ++ ACS+   
Sbjct: 388 VFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGK 447

Query: 152 VREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
           + EG  I  ++  ++ V   V   +  +D+ G+  ++  A ++ + M  + +   W A++
Sbjct: 448 LEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALL 507

Query: 210 VGYASVGDL----VEAKTVFDLMPERS 232
               +   L    V AK +F+  P+ +
Sbjct: 508 GACKTHSRLDLAEVAAKKLFENEPDNA 534


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/503 (36%), Positives = 294/503 (58%), Gaps = 11/503 (2%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYT 138
           +S    +  +  VF     P+T LW +++ GY QN+   E   +F +++  + V  D  T
Sbjct: 149 YSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVT 208

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              V+ AC+ +L+V+ G+ +H  VIR   D D+ +  SL++LY K      A  +F +MP
Sbjct: 209 LVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP 268

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQ 254
           E++V+SW+ MI  YA+     EA  +F  M E+    ++V+  + +       +L   ++
Sbjct: 269 EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK 328

Query: 255 LFD----EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +      +  E +    T +ID Y K      A  LF+  P +DVV+W AL+SGYAQNG 
Sbjct: 329 IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGM 388

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
             +++ +F +M S  +QPD   +V +++A S++G    +  +  Y+ RS  + S   V A
Sbjct: 389 AYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFN-SNVFVGA 447

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LT 429
           +L+++ +KCG++  A +LF+ M  RDVV + SMI    IHG G +A+ +FD+M+    + 
Sbjct: 448 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVR 507

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           P+ V F  +L+ACSH GLVE+G + F+ M + Y + P  EH+  MVDLLGR G L  A +
Sbjct: 508 PNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMD 567

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
           ++N MP+      WGALLGAC+++ +IE+GE  A  LF L+P +AG Y+LLSNIYA   +
Sbjct: 568 IINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGK 627

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W +V  +R+++KERGL+K+ G S
Sbjct: 628 WDNVAELRTRIKERGLKKMFGQS 650



 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 156/422 (36%), Positives = 242/422 (57%), Gaps = 9/422 (2%)

Query: 159  HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            HA +  +G+  D  + T    +Y     I  A  VF+++P      W  MI G+A+ G  
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 219  VEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTM 270
            + +  ++  M E+       ++   +     + DL+  + +   +       ++     +
Sbjct: 800  LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAAL 859

Query: 271  IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
            +D YAK GD+ +AR +F+    RD+V+W+++ISGYA NG   E +  F  M S  V P+ 
Sbjct: 860  VDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNR 919

Query: 331  FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              ++S++ AC  +G L    W  SY+ ++  +     V  A++DM +KCG++D A  LF+
Sbjct: 920  VSILSVLLACGNLGALRKGEWFHSYVIQTGFEFD-ILVATAIMDMYSKCGSLDLARCLFD 978

Query: 391  TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
                +D+V + +MI    IHGHGR+A+ LFD+M+  G+ P  V FT VL+ACSH GL+E+
Sbjct: 979  ETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEE 1038

Query: 451  GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
            G  +F+ M   + I     +YACMVDLLGR G L  A +L+ +MPVEP AS WG+LLGAC
Sbjct: 1039 GKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGAC 1098

Query: 511  KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
            +++++++L E +A+ LF L+P +AG +VLLSNIYA   RW +V  VR  M  RG  KI G
Sbjct: 1099 RIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQG 1158

Query: 571  CS 572
             S
Sbjct: 1159 FS 1160



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 238/496 (47%), Gaps = 51/496 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L + C     + Q+HS + K G+  D        SL ++    L  +  VF+   +PN  
Sbjct: 10  LFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSL-YAKCASLQAARKVFDETPHPNVH 68

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           LWN+ L+ Y +  ++ E   +F  +I      PD +T P+ +KAC+ +  +  G  IH  
Sbjct: 69  LWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGF 128

Query: 162 VIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
             +   +  D+FVG++L++LY K  ++  A KVF+E    + V WT+M+ GY    D  E
Sbjct: 129 AKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEE 188

Query: 221 AKTVFDLM--------------------PERSNVSWNALIGGLVKIGDLRSARQLFD-EM 259
           A  +F  M                     +  NV   + + GLV        R+ FD ++
Sbjct: 189 ALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLV-------IRREFDGDL 241

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P  N     ++++ YAK G    A +LF   P++DV++WS +I+ YA N   +EA+ +F 
Sbjct: 242 PLVN-----SLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 296

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           +M  K  +P+   +VS + AC+   NL+    +         +L  + V  AL+DM  KC
Sbjct: 297 EMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFS-VSTALIDMYMKC 355

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
              D A +LF+ +P +DVVS+ +++ G + +G   +++ +F  MLS+G+ PD VA   +L
Sbjct: 356 SCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 415

Query: 440 TACSHVGLVED-----GWRFFEAMQ-NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
            A S +G+ +      G+        NV+         A +++L  + G L  A +L   
Sbjct: 416 AASSELGIFQQALCLHGYVVRSGFNSNVFV-------GASLIELYSKCGSLGDAVKLFKG 468

Query: 494 MPVEPHASAWGALLGA 509
           M V      W +++ A
Sbjct: 469 MIVRD-VVIWSSMIAA 483



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 212/421 (50%), Gaps = 17/421 (4%)

Query: 53   LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
            L + H+ I   GL+ D  ++  F  +  S    +  ++ VF  I NP +FLWN +++G++
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSF-NRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 113  QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
             + RF+    ++ +++ +   PDK+ FP  +K+C+ +  ++ G  IH  ++  G   D+F
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 173  VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
            V  +L+D+Y K  +I  AR VFD+M  R++VSWT+MI GYA  G   E    FDLM   S
Sbjct: 855  VDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLM-RSS 913

Query: 233  NVSWN--ALIGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
             V  N  +++  L+  G+L + R+       +     E +++  T ++D Y+K G +  A
Sbjct: 914  GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA 973

Query: 284  RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            R LF+    +D+V WSA+I+ Y  +G   +A+ +F  M    V+P       ++SACS  
Sbjct: 974  RCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHS 1033

Query: 344  GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
            G L+        ++   +   +    A +VD+  + G +  A +L E MP   D   + S
Sbjct: 1034 GLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGS 1093

Query: 403  MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
            ++    IH +   A  + D +    L P    + ++L   S++   +  W   E ++ + 
Sbjct: 1094 LLGACRIHNNLDLAEKIADHLFH--LDPVHAGYHVLL---SNIYAAKSRWNEVEKVRKMM 1148

Query: 463  A 463
            A
Sbjct: 1149 A 1149



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 23/292 (7%)

Query: 250 RSARQLFDEMPERNVVS---YTTMIDG-YAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
           RS  QL  ++ +  ++    + T ++  YAK   + +AR +F+  P  +V  W++ +  Y
Sbjct: 18  RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY 77

Query: 306 AQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
            +  Q +E +++F  M C+    PD F +   + AC+ +  L+L   +  +  ++    S
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGS 137

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM- 423
              V +ALV++ +KCG M  A ++FE     D V + SM+ G   +    +A++LF +M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA------CMVDL 477
           + + +  D V    V++AC+ +  V+ G         V+ +V   E          +++L
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAG-------SCVHGLVIRREFDGDLPLVNSLLNL 250

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
             +TG  K A  L + MP E    +W  ++ AC  Y++ E      N   E+
Sbjct: 251 YAKTGCEKIAANLFSKMP-EKDVISWSTMI-AC--YANNEAANEALNLFHEM 298


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 310/558 (55%), Gaps = 20/558 (3%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P  F  PS       LI+         Q+H+  ++ GL +     +  +   +     +S
Sbjct: 68  PDGFTFPS-------LIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRIS 120

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
            +  VF+ +   +   WN +L G  +N+R  E   +F R++ E    D  T   V+  C 
Sbjct: 121 EAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCV 180

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +        +H   ++ G+D+++FV  +LID+YGK   +  A+ VF  M  R++V+W +
Sbjct: 181 LLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNS 240

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPER 262
           +I G    G    A  +F  M   S VS +     +L   + + GD RSA+ L   +  R
Sbjct: 241 IISGCEQRGQTAAALKMFQGM-RGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRR 299

Query: 263 -----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                ++++   ++D YAK+ ++ +A+ +F++ P +D V+W+ LI+GY QNG  +EAV+ 
Sbjct: 300 GWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVER 359

Query: 318 FSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +  M   + ++  +   VS++ A S +G L     + +   +  +++   +V   L+D+ 
Sbjct: 360 YGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVD-VYVGTCLIDLY 418

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCG +  A  LFE MP R    + ++I GL +HGHG +A++LF RM  EG+ PD V F 
Sbjct: 419 AKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFV 478

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            +L ACSH GLV+ G  FF+ MQ  Y IVP  +HYACM D+LGR G L  A+  + +MP+
Sbjct: 479 SLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPI 538

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           +P ++ WGALLGAC+++ ++E+G++ +  LFEL+P+N G YVL+SN+YA   +W  V  V
Sbjct: 539 KPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEV 598

Query: 557 RSKMKERGLRKIPGCSSL 574
           RS ++ + L+K PG SS+
Sbjct: 599 RSLVRRQNLQKTPGWSSI 616


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 317/580 (54%), Gaps = 51/580 (8%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNR 95
            L+   K + + +  Q+H  I+K G  +D    +SLV HF + C  L +    +  VF+ 
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV-HFYAECGELDS----ARKVFDE 194

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVRE 154
           +   N   W +++ GY++     +   +F R++R EE  P+  T   VI AC+ +  +  
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  ++A +   G++ +  + ++L+D+Y K   I  A+++FDE    N+    AM   Y  
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 215 VGDLVEAKTVFDLM------PER-------------SNVSW------------------- 236
            G   EA  VF+LM      P+R              N+ W                   
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NALI   +K     +A ++FD M  + VV++ +++ GY + G++ +A   FE  P++++
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           V+W+ +ISG  Q    +EA+++F  M S+  V  D   ++S+ SAC  +G LDL+ W+  
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ ++ + L    +   LVDM ++CG+ + A  +F ++ NRDV ++ + I  +++ G+  
Sbjct: 495 YIEKNGIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAE 553

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ LFD M+ +GL PD VAF   LTACSH GLV+ G   F +M  ++ + P   HY CM
Sbjct: 554 RAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCM 613

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G L+ A +L+  MP+EP+   W +LL AC++  ++E+    A ++  L P+  
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           GSYVLLSN+YA+A RW D+  VR  MKE+GLRK PG SS+
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 254/530 (47%), Gaps = 49/530 (9%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           +L   + + P    +  C  +  + +K CK    L   H  + K+GL+ D S +   ++ 
Sbjct: 14  VLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVAR 73

Query: 79  CHSLAT--PLSYSTAVFNRIVNPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
              L T   LS++  VF    +  T F++N+L++GY+ +    E   +F+R++     PD
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
           KYTFP  + AC+   +   G  IH  +++ G  +D+FV  SL+  Y +  E+  ARKVFD
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLR 250
           EM ERNVVSWT+MI GYA      +A  +F  M     V+ N+     +I    K+ DL 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 251 SARQLF----DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           +  +++    +   E N +  + ++D Y K   +  A+ LF+     ++   +A+ S Y 
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           + G   EA+ +F+ M    V+PD   ++S +S+CSQ+ N+        Y+ R+  + S  
Sbjct: 314 RQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE-SWD 372

Query: 367 HVIAALVDMNAKC-------------------------------GNMDRAAELFETMPNR 395
           ++  AL+DM  KC                               G +D A E FETMP +
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHVGLVE-DGWR 453
           ++VS+ ++I GL       +A+ +F  M S EG+  D V    + +AC H+G ++   W 
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           ++   +N   I         +VD+  R G  +SA  + NS+      SAW
Sbjct: 493 YYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL-TNRDVSAW 539


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/585 (31%), Positives = 318/585 (54%), Gaps = 70/585 (11%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP---NTFLWNTLLKGYSQ 113
           H  I   G E +  +    +++ +S +  L  ++ VF+ I      +   WN+++  + +
Sbjct: 172 HGLICCNGFESNVFVCNALVAM-YSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVK 230

Query: 114 NSR---FIEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
            S     +++F+    ++ E+A     D  +   ++ AC+ + ++ +   IH+  IR G 
Sbjct: 231 GSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGT 290

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             D FV  +LID Y K   +  A  VF+ M  ++VVSW AM+ GY   G    A  +F  
Sbjct: 291 FADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKN 350

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVS------------- 266
           M + +     ++W+A+I G  + G  + A   F +M     E N V+             
Sbjct: 351 MRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGA 410

Query: 267 ----------------------------------YTTMIDGYAKVGDMTSARSLFEAAP- 291
                                             +  +ID Y+K     +AR++F + P 
Sbjct: 411 LSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPR 470

Query: 292 -DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDL 348
            +R+VV W+ +I GYAQ G  ++A+K+FS+M SK   V P+ + +  ++ AC+ + +L +
Sbjct: 471 RERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRM 530

Query: 349 SNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
              + +Y++R H   S  + +A  L+DM +KCG++D A  +F++MP R+ VS+ SM+ G 
Sbjct: 531 GKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY 590

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HG G++A+ +FD+M   G  PD+++F ++L ACSH G+V+ G  +F+ M++ Y ++ S
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIAS 650

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            +HYAC++DLL R+G L  A++ +  MP+EP A+ W ALL AC+++S++EL E   N+L 
Sbjct: 651 AQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLV 710

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++ +N GSY L+SNIYATA RW DV  +R  MK+ G++K PGCS
Sbjct: 711 SMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCS 755



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/563 (25%), Positives = 245/563 (43%), Gaps = 108/563 (19%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC------HSLATPLSYST----- 90
           +L+K+C+    + Q+H  II  GL    S  A  +S+       HS  +P S  T     
Sbjct: 36  SLLKECRSVNTVRQIHQKIIAYGLL---SYPASLLSVSLPPLPSHSYVSPKSLGTGVVAS 92

Query: 91  -----------AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
                      +V  R+V      WN L++ + +  R      +  R++R    PD +T 
Sbjct: 93  YLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTL 152

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
           P  +KAC  + S R G+A H  +   G + +VFV  +L+ +Y +   +  A  VFDE+  
Sbjct: 153 PYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITR 212

Query: 200 R---NVVSWTAMIVGYASVGDLVEAKTVFDLMP---------ERSNV------------- 234
           +   +V+SW +++  +    +   A  +F  M          ERS++             
Sbjct: 213 KGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASL 272

Query: 235 -----------------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
                                    NALI    K G ++ A  +F+ M  ++VVS+  M+
Sbjct: 273 KALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMV 332

Query: 272 DGYAKVGDMTSARSLFEAAPDR----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            GY + G   +A  LF+         DV+ WSA+I+GYAQ G   EA+  F  M     +
Sbjct: 333 TGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSE 392

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAH----------VIAALVDMN 376
           P+   ++SL+SAC+ +G L       +Y L +  + L              V  AL+DM 
Sbjct: 393 PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMY 452

Query: 377 AKCGNMDRAAELFETMPNRD--VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDE 432
           +KC +   A  +F ++P R+  VV++  MI G + +G    A+ LF  M+S+   + P+ 
Sbjct: 453 SKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNA 512

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--------CMVDLLGRTGHL 484
              + +L AC+H+  +  G       + ++A V     Y         C++D+  + G +
Sbjct: 513 YTISCILMACAHLSSLRMG-------KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDV 565

Query: 485 KSAYELLNSMPVEPHASAWGALL 507
            +A  + +SMP     S W +++
Sbjct: 566 DTARNVFDSMPKRNEVS-WTSMM 587


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/579 (31%), Positives = 314/579 (54%), Gaps = 52/579 (8%)

Query: 42  TLIK---KCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           TLIK   + K ++   Q+H+  I+      H+  +  IS+ ++    L  +  +F  + +
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISI-YTNLKLLHEALLLFKTLKS 67

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P    W ++++ ++  S F +    FV +      PD   FP V+K+C+ ++ +R G ++
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGK----RKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           H  ++R G+D D++ G +L+++Y K      +IS    VFDEMP+R   S    +     
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVG-NVFDEMPQRTSNSGDEDVKAETC 186

Query: 215 VG--DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP------------ 260
           +    +   + VF++MP +  VS+N +I G  + G    A ++  EM             
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246

Query: 261 ---------------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
                                      + +V   ++++D YAK   +  +  +F     R
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D ++W++L++GY QNG+ +EA+++F  M +  V+P      S++ AC+ +  L L   + 
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            Y+ R     S   + +ALVDM +KCGN+  A ++F+ M   D VS+ ++I G ++HGHG
Sbjct: 367 GYVLRGGFG-SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +AVSLF+ M  +G+ P++VAF  VLTACSHVGLV++ W +F +M  VY +    EHYA 
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           + DLLGR G L+ AY  ++ M VEP  S W  LL +C ++ ++EL E VA ++F ++ +N
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G+YVL+ N+YA+  RW ++  +R +M+++GLRK P CS
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACS 584



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 42/247 (17%)

Query: 235 SWNALIGGLVK----IGDLRSARQLFDEMPERNVVSYTT---MIDGYAKVGDMTSARSLF 287
           S  ALI  L+K    I     A+QL  +      +S+T+   +I  Y  +  +  A  LF
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLF 62

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +      V+AW ++I  +       +A+  F +M +    PD  +  S++ +C+ + +L 
Sbjct: 63  KTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR 122

Query: 348 LSNWVDSYLSRSHMD----------------------LSRAHVIAALVDMNAKCGNMDRA 385
               V  ++ R  MD                      +S  +V   +    +  G+ D  
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK 182

Query: 386 AE-------------LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           AE             +FE MP +DVVSY ++I G +  G    A+ +   M +  L PD 
Sbjct: 183 AETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDS 242

Query: 433 VAFTIVL 439
              + VL
Sbjct: 243 FTLSSVL 249


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/536 (34%), Positives = 299/536 (55%), Gaps = 39/536 (7%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNPN 100
           L + CK    L Q+H+ ++  GL  + S+V   I    SL+ P  L Y+  +F+ I  P+
Sbjct: 18  LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELI-YSASLSVPGALKYAHKLFDEIPKPD 76

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             + N +L+G +Q+ +  +  +++  + +    PD+YTF  V+KACS +     G A H 
Sbjct: 77  VSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHG 136

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V+R G          +++ Y K                       A+I+ +A+ GDL  
Sbjct: 137 KVVRHGF---------VLNEYVK----------------------NALILFHANCGDLGI 165

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
           A  +FD   +   V+W+++  G  K G +  A +LFDEMP ++ V++  MI G  K  +M
Sbjct: 166 ASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEM 225

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            SAR LF+   ++DVV W+A+ISGY   G P EA+ IF +M      PD   ++SL+SAC
Sbjct: 226 DSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSAC 285

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA----ALVDMNAKCGNMDRAAELFETMPNRD 396
           + +G+L+    +  Y+  +    S  +V      AL+DM AKCG++DRA E+F  + +RD
Sbjct: 286 AVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRD 345

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           + ++ ++I GL++H H   ++ +F+ M    + P+EV F  V+ ACSH G V++G ++F 
Sbjct: 346 LSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFS 404

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+++Y I P+ +HY CMVD+LGR G L+ A+  + SM +EP+A  W  LLGACK+Y ++
Sbjct: 405 LMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELG+    +L  +    +G YVLLSNIYA+  +W  V  VR    +  ++K  G S
Sbjct: 465 ELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVS 520


>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
          Length = 493

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/446 (39%), Positives = 258/446 (57%), Gaps = 33/446 (7%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           L+    +PD  +    +  CS + S    + +H+  +R G   DV+V  +    Y    +
Sbjct: 62  LLNHRLLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAAD 121

Query: 187 ISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV 244
           ++ A ++F E      +VV+WT M+ G+A+                              
Sbjct: 122 VASAERLFSEASRDVADVVTWTTMVTGHANA----------------------------- 152

Query: 245 KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
             GD+  AR  FD MPE+NVVS+ TM+  YA+ G +  AR LF+  P R+   W ++I+G
Sbjct: 153 --GDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITG 210

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
             Q+   +EA+++FSDM +  V P+E  LVS +SAC+Q+  ++   WV  Y  R      
Sbjct: 211 LLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAM 270

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
            A +  A+VDM  KCG++  A  +F  MP R++ S+ SMI GL+++G  RQA+SLF +M 
Sbjct: 271 SAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQ 330

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
             G+ P+++ F  +L+ACSH GLV++G   F  M N + I P PEHY  MVDLLGR+GH+
Sbjct: 331 LAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHV 390

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
           + A + + SMPVEPH   WGAL GACK++ ++ELGE VA +L ELEPQ+   Y+LLSNIY
Sbjct: 391 REAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIY 450

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPG 570
           AT++RW D+  VR  +K+R + K  G
Sbjct: 451 ATSNRWDDMANVRRILKDRKVPKGTG 476



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 12/276 (4%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            ++ A  L  +  +F+R+ + N   W +++ G  Q+    E   +F  ++    VP++  
Sbjct: 179 AYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPA 238

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
               + AC+ +  +  GT +H    R         + T+++D+YGK   I  A +VF  M
Sbjct: 239 LVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAM 298

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVF---DLMPERSN-VSWNALIGGLVKIGDLRSAR 253
           P RN+ SW +MI G A  G   +A ++F    L   R N +++  L+      G +   R
Sbjct: 299 PVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGR 358

Query: 254 QLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQ 307
            LF +M     +      Y  M+D   + G +  A    ++ P +     W AL      
Sbjct: 359 WLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKI 418

Query: 308 NGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQ 342
           +G+ +   ++   +     Q    +IL+S + A S 
Sbjct: 419 HGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSN 454


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 286/540 (52%), Gaps = 57/540 (10%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRL----------------IREEA 132
           + A F  +    T  +N LL GY +N        +F R+                +R   
Sbjct: 36  ARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHT 95

Query: 133 VPDKYT------FPLVIKACSHVLS--VREGTAIHA-AVIRWGVDEDVFVGTSLIDLYGK 183
           +PD         +P  + + + +L   VR G    A  + R   + +    T L+  +  
Sbjct: 96  LPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLD 155

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL 243
              +  ARK+FDEMP ++VV+WTAM+ GY  VG + EA+T+FD MP+R+ VSW A++ G 
Sbjct: 156 AGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGY 215

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            + G +  AR+LF+ MPERN VS+T M+ GY + G +  A  LF A PD  + A + +I 
Sbjct: 216 AQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIV 275

Query: 304 GYAQNGQPDEAVKIFSDMCSKN----------VQPDEFIL-------------------- 333
           G+ Q G  D A  +F  MC ++           + +EF++                    
Sbjct: 276 GFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPS 335

Query: 334 -VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
            +S+++ C+ +  LD    V   + R   D+   + ++AL+ M  KCGN+D+A  +F   
Sbjct: 336 VISILTVCAALAVLDYGREVHGAMLRRSFDMD-IYAVSALITMYIKCGNLDKAKRVFHMF 394

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
             +DVV + SMI G + HG G +A+ +FD M   G+ PD + +   LTACS+ G V++G 
Sbjct: 395 EPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGR 454

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
             F +M+    I P  EHYACMVDLLGR G +  A  L+ +MPVEP A  WGAL+GAC++
Sbjct: 455 DIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRM 514

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + + E+ E+ A +L ELEP NAG YVLLS+IY ++ RW D   +R  +  R L K  GCS
Sbjct: 515 HKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCS 574



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 91/345 (26%)

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           VV   A I   A  G++  A+  F+ MP R+  S+NAL+ G  +     +A ++F  MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 262 RN---------------------------------VVSYTTMIDGYAKVGDMTSARSLFE 288
           R+                                 VVS+T+++ GY + G +  A  LF 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
             P+R+ ++++ L+ G+   G+ DEA K+F +M +K+V        +++S   QVG +  
Sbjct: 137 QMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDV----VAWTAMLSGYCQVGRV-- 190

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
                                             D A  LF+ MP R+VVS+ +M+ G +
Sbjct: 191 ----------------------------------DEARTLFDEMPKRNVVSWTAMVSGYA 216

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
            +G    A  LF+ M       +EV++T +L      G +ED    F AM         P
Sbjct: 217 QNGQVNLARKLFEVMPER----NEVSWTAMLFGYIQAGRIEDAEELFNAM---------P 263

Query: 469 EH--YAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +H   AC  M+   G+ G + +A  + + M  E     W A++ A
Sbjct: 264 DHPLAACNGMIVGFGQQGMVDAAKSVFDRM-CERDDGTWSAIIKA 307



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 3/180 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    ++S LT+     +  +  +VH  ++++  + D   V+  I++       L  +  
Sbjct: 331 PNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGN-LDKAKR 389

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+     +  +WN+++ GY+Q+    E   IF  +     VPD  T+   + ACS+   
Sbjct: 390 VFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGK 449

Query: 152 VREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V+EG  I  ++  + G+   +     ++DL G+   +  A  +   MP E + V W A++
Sbjct: 450 VKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALM 509


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 302/527 (57%), Gaps = 14/527 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS--TAVFNRIVNPNTFLWNTLLKGYSQ 113
           VHS I+  G E D ++    + +    A   SY     VF ++VN +   WNT++ G ++
Sbjct: 249 VHSRILNAGHESDTAVGTALVKM---YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
              + E   ++ ++ RE  +P+K T+ +++ AC +  ++  G  IH+ V + G   D+ V
Sbjct: 306 GGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
             +LI +Y +   I  AR VFD+M  ++V+SWTAMI G A  G   EA TV+  M     
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV 425

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARS 285
           E + V++ +++        L   R++  ++ E  + +      T+++ Y+  G +  AR 
Sbjct: 426 EPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQ 485

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F+    RD+VA++A+I GYA +    EA+K+F  +  + ++PD+   +++++AC+  G+
Sbjct: 486 VFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 545

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+ +  + + L R     S   V  ALV   AKCG+   A+ +FE M  R+V+S+ ++I 
Sbjct: 546 LEWAREIHT-LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIG 604

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G + HG G+ A+ LF+RM  EG+ PD V F  +L+ACSH GL+E+G R+F +M   +AI+
Sbjct: 605 GSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAII 664

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+ EHY CMVDLLGR G L  A  L+ +MP + +   WGALLGAC+++ ++ + E  A  
Sbjct: 665 PTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES 724

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +L+  NA  YV LS++YA A  W     +R  M++RG+ K PG S
Sbjct: 725 SLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRS 771



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 222/426 (52%), Gaps = 10/426 (2%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + ++S L+  K         ++H   ++ GL  D   VA+ I   ++    +  +  
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVK-VANCILNMYAKCGSIEEARE 182

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+++   +   W   + GY+   R    F IF ++ +E  VP++ T+  V+ A S   +
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           ++ G A+H+ ++  G + D  VGT+L+ +Y K       R+VF+++  R++++W  MI G
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
            A  G   EA  V++ M       + +++  L+   V    L   +++   + +    S 
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 267 ---YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                 +I  Y++ G +  AR +F+    +DV++W+A+I G A++G   EA+ ++ +M  
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             V+P+     S+++ACS    L+    +   +  + +  + AHV   LV+M + CG++ 
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGL-ATDAHVGNTLVNMYSMCGSVK 481

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A ++F+ M  RD+V+Y +MI G + H  G++A+ LFDR+  EGL PD+V +  +L AC+
Sbjct: 482 DARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 541

Query: 444 HVGLVE 449
           + G +E
Sbjct: 542 NSGSLE 547



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 249/505 (49%), Gaps = 29/505 (5%)

Query: 41  LTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISL---CHSL--ATPLSYSTAV 92
           + ++K+C     L    QVH HII+     D   V   I++   C S+  A  +    + 
Sbjct: 27  MKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSY 86

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
             R V+     WN ++ GY Q     +   +  ++ +    PD+ T    + +C    ++
Sbjct: 87  MERTVHS----WNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGAL 142

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  IH   ++ G+  DV V   ++++Y K   I  AR+VFD+M +++VVSWT  I GY
Sbjct: 143 EWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGY 202

Query: 213 ASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR----QLFDEMPERNV 264
           A  G    A  +F  M +     + +++ +++        L+  +    ++ +   E + 
Sbjct: 203 ADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDT 262

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
              T ++  YAK G     R +FE   +RD++AW+ +I G A+ G  +EA ++++ M  +
Sbjct: 263 AVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQRE 322

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V P++   V L++AC     L     + S ++++    S   V  AL+ M ++CG++  
Sbjct: 323 GVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGF-TSDIGVQNALISMYSRCGSIKD 381

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F+ M  +DV+S+ +MI GL+  G G +A++++  M   G+ P+ V +T +L ACS 
Sbjct: 382 ARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSS 441

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
              +E G R  +  Q V A + +  H    +V++    G +K A ++ + M ++    A+
Sbjct: 442 PAALEWGRRIHQ--QVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAY 498

Query: 504 GALLGACKLYSDIELGELVANRLFE 528
            A++G    Y+   LG+  A +LF+
Sbjct: 499 NAMIGG---YAAHNLGK-EALKLFD 519


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 305/577 (52%), Gaps = 23/577 (3%)

Query: 8   NTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKG 64
           +  C H  C+  + +      ++  +P C+  A +L+  C     L    Q+HS+++K G
Sbjct: 220 HAQCGHGECALQIFD---EMQLSGLRPDCVTVA-SLLAACASVGDLQKGKQLHSYLLKAG 275

Query: 65  LEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF 121
           +  D+      + L   C  + T    +  +FN     N  LWN +L  Y Q S   + F
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIET----AHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSF 331

Query: 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY 181
            IF ++      P+++T+P +++ C+    +  G  IH+  I+ G + D++V   LID+Y
Sbjct: 332 EIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMY 391

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWN 237
            K   +  ARK+ + + +R+VVSWT+MI GY       EA   F  M +      N+   
Sbjct: 392 SKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLA 451

Query: 238 ALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           +       I  +R   Q+   +       ++  + T+++ YA+ G    A SLF     +
Sbjct: 452 SAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK 511

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D + W+ LISG+ Q+    +A+ +F  M     + + F  +S +SA + + ++     V 
Sbjct: 512 DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVH 571

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
               ++    S   V  AL+ +  KCG+++ A  +F  M  R+ VS+ ++I   S HG G
Sbjct: 572 GRAVKTG-HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRG 630

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A+ LFD+M  EGL P++V F  VL ACSHVGLVE+G  +F++M NVY + P P+HYAC
Sbjct: 631 LEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYAC 690

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           +VD+LGR G L  A   ++ MP+  +A  W  LL ACK++ +IE+GEL A  L ELEP +
Sbjct: 691 VVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHD 750

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + SYVLLSN YA   +W +   VR  MK+RG+RK PG
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPG 787



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 219/472 (46%), Gaps = 19/472 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+  + +GL  D  L+ + +   ++    +  +  VF  + + +   W  +L GY+Q+
Sbjct: 64  EIHATSVVRGLGADR-LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F ++ ++     +P  Y    V+ AC+      +G  IHA V +     + FVG
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD------LM 228
            +LI LY        A +VF +M   + V++  +I G+A  G    A  +FD      L 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSAR 284
           P+   V+  +L+     +GDL+  +QL   + +  +    ++  +++D Y K GD+ +A 
Sbjct: 243 PDCVTVA--SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F      +VV W+ ++  Y Q     ++ +IF  M +  + P++F    ++  C+  G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            ++L   + S   ++  + S  +V   L+DM +K G +D+A ++ E +  RDVVS+ SMI
Sbjct: 361 QIELGEQIHSLSIKNGFE-SDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMI 419

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G   H    +A++ F  M   G+ PD +      +AC+ +  +  G +   A   V   
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGY 478

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL---GACKLY 513
                 +  +V+L  R G  + A+ L   +  +   + W  L+   G  +LY
Sbjct: 479 AADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT-WNGLISGFGQSRLY 529



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/490 (23%), Positives = 223/490 (45%), Gaps = 18/490 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L+   K KL      +H+ + K+    +  +    I+L     +    +  
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGS-FKLAER 200

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  ++  +   +NTL+ G++Q         IF  +      PD  T   ++ AC+ V  
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +++G  +H+ +++ G+  D     SL+DLY K  +I  A  +F+     NVV W  M+V 
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL----FDEMPERN 263
           Y  + DL ++  +F  M       +  ++  ++      G +    Q+         E +
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESD 380

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +     +ID Y+K G +  AR + E    RDVV+W+++I+GY Q+   +EA+  F +M  
Sbjct: 381 MYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDS--YLSRSHMDLSRAHVIAALVDMNAKCGN 381
             V PD   L S  SAC+ +  +     + +  Y+S    D+S   +   LV++ A+CG 
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS---IWNTLVNLYARCGR 497

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
            + A  LF  + ++D +++  +I G       +QA+ +F +M   G   +   F   ++A
Sbjct: 498 SEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISA 557

Query: 442 CSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
            +++  ++ G +    A++  +      E    ++ L G+ G ++ A  + + M +    
Sbjct: 558 LANLADIKQGKQVHGRAVKTGH--TSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 501 SAWGALLGAC 510
           S W  ++ +C
Sbjct: 616 S-WNTIITSC 624



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 13/252 (5%)

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID YAK G +  AR +F+    RD V+W A++SGYAQ+G   EA +++S M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
            ++L S++SAC++         + + + +     S   V  AL+ +    G+   A  +F
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAF-CSETFVGNALIALYLGFGSFKLAERVF 202

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M   D V++ ++I G +  GHG  A+ +FD M   GL PD V    +L AC+ VG ++
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 450 DGWRFFE-----AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            G +         M   Y    S      ++DL  + G +++A+++ N +    +   W 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGS------LLDLYVKCGDIETAHDIFN-LGDRTNVVLWN 315

Query: 505 ALLGACKLYSDI 516
            +L A    SD+
Sbjct: 316 LMLVAYGQISDL 327


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 312/575 (54%), Gaps = 24/575 (4%)

Query: 19  MLPNCSRSAPINFP-------KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL 71
           +LP+ S S P   P       + S    +L+L++        +Q+ SH I  G+ +D  +
Sbjct: 3   LLPSISISIPRRRPWGWAWGYRQSYHNFSLSLLQNLSHPRSFNQILSHAIASGVFRDPVV 62

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131
            +  +    S     ++S  +F +I  PN F WN + + YS++S   E   ++  ++R  
Sbjct: 63  SSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNG 122

Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
            +PD Y+FP V+KAC+ +  + +G  IH++ ++ GV  DVFV  +LI  +     +  AR
Sbjct: 123 TLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAAR 182

Query: 192 KVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVF-------DLMPERSNVSWNALIGG 242
            VFD +P   R+VVSW +MI GY        A  VF        L P+   +     + G
Sbjct: 183 AVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCG 242

Query: 243 LVKIGDL-RSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
            + + DL +    LF       +V   +++ID Y+K G +  AR +F+  P R+ V W++
Sbjct: 243 RLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTS 302

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS- 359
           +I+GYAQ+    EA+++F +M       D   +  ++SAC   G L    W+  Y  R+ 
Sbjct: 303 MIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNS 362

Query: 360 -HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             MDL+  +   AL+ M +KCG++ +A E+F  +   D+ S+ ++I GL+++G   +A+ 
Sbjct: 363 IEMDLNARN---ALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALH 419

Query: 419 LFDRM-LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           LF +M +   + P+E+ F  VL AC+H G V+ G  +F AM  +Y + P  EHY CMVDL
Sbjct: 420 LFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDL 479

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR   L  A + + ++P++P    W +LL AC+ + +IEL E  A ++ ELEP+  G+ 
Sbjct: 480 LGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGAR 539

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VLLSN+YA+A RW DV  VR  M  + ++K PGCS
Sbjct: 540 VLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCS 574


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 171/477 (35%), Positives = 279/477 (58%), Gaps = 7/477 (1%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           +N L+ GY+   R    F ++ R++++  +PD +TFP V+K+C+  + + EG  +H  +I
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G   +++V  SL+  Y   K    A +VFDEM  R+VVSWT +I GY   G   EA  
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 224 VFDLMPERSNV-SWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVG 278
           +F  M    N  ++ +++    + G L   + +    F       +     ++D Y K G
Sbjct: 122 LFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCG 181

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  A+ +F+   ++D+V+W+++ISG  Q   P EA+++F DM S  ++PD  IL S++S
Sbjct: 182 CLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLS 241

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+++G LD   WV  ++ R  +      +  A+VDM AKCG ++ + ++F  MP+++V+
Sbjct: 242 ACARLGALDYGRWVHEHIDRKAIKWD-IQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVL 300

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ +++ GL++HGH  + + LF+ M+  G+ P+EV F  +LTAC H GLV +G ++F  M
Sbjct: 301 TWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWM 360

Query: 459 Q-NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           +   Y + P  EHY CMVDLL R   L  A EL  +MP+ P     GALL ACK   + E
Sbjct: 361 KGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTE 420

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L + + +R  EL+  ++G YVLLSNI+A   RW DV  +R  MKE+G++K PG + +
Sbjct: 421 LPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVI 477



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 186/386 (48%), Gaps = 24/386 (6%)

Query: 55  QVHSHIIKKG----LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           QVH  IIK G    +  ++SLV HF S+C         ++ VF+ ++  +   W  ++ G
Sbjct: 55  QVHGVIIKMGFVCNIYVENSLV-HFYSVCKRFGD----ASRVFDEMLVRDVVSWTGVISG 109

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           Y +   F E   +F+R+  E   P+  TF  V+ AC     +  G  IH    +      
Sbjct: 110 YVRAGLFDEAVGLFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVG 166

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP- 229
           + V  +L+D+Y K   +  A++VFDE+ E+++VSWT++I G        EA  +F  M  
Sbjct: 167 LEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQS 226

Query: 230 ---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMT 281
              E   +   +++    ++G L   R + + + +R  + +     T M+D YAK G + 
Sbjct: 227 SGIEPDGIILTSVLSACARLGALDYGRWVHEHI-DRKAIKWDIQIGTAMVDMYAKCGCIE 285

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            +  +F   P ++V+ W+AL++G A +G   + +++F +M    ++P+E   +++++AC 
Sbjct: 286 MSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACC 345

Query: 342 QVGNLDLSNWVDSYLSRSHMDL-SRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVS 399
             G ++      +++     +L  R      +VD+  +   +D A EL + MP + DV  
Sbjct: 346 HCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRI 405

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLS 425
             +++     +G+      + DR + 
Sbjct: 406 MGALLSACKENGNTELPQEILDRFVE 431



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 135/293 (46%), Gaps = 21/293 (7%)

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
           GLE  ++L+  ++  C  L      +  VF+ +   +   W +++ G  Q +   E   +
Sbjct: 166 GLEVSNALMDMYVK-CGCLPG----AKQVFDELAEKDIVSWTSIISGLVQCNCPKEALEL 220

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183
           F  +      PD      V+ AC+ + ++  G  +H  + R  +  D+ +GT+++D+Y K
Sbjct: 221 FQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAK 280

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSN-VSWNAL 239
              I  + ++F+ MP +NV++W A++ G A  G   +   +F+ M     R N V++ A+
Sbjct: 281 CGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAI 340

Query: 240 IGGLVKIGDLRSARQLFDEMPERN------VVSYTTMIDGYAKVGDMTSARSLFEAAP-D 292
           +      G +   RQ F+ M  +       +  Y  M+D   +   +  A  L +A P  
Sbjct: 341 LTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMS 400

Query: 293 RDVVAWSALISGYAQNGQ---PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            DV    AL+S   +NG    P E +  F ++ S +     ++L+S + A +Q
Sbjct: 401 PDVRIMGALLSACKENGNTELPQEILDRFVELDSHD--SGVYVLLSNIHAINQ 451


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 300/555 (54%), Gaps = 33/555 (5%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           + L+L+ +CK    L ++   I+ K            I  C  S    ++ +  VF +I 
Sbjct: 6   TILSLLARCKSMRELKKLRGLILSK-----------LIDFCVDSXFGDINNADLVFRQID 54

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            P+ ++WN++++G+  N        ++ +LI     PD +TFP V+KAC  +     G  
Sbjct: 55  APSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKC 114

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH  +++ G + D +  T L+ +Y    ++    KVFD +P  NVV+WT +I GY +   
Sbjct: 115 IHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQ 174

Query: 218 LVEAKTVFDLMP----ERSNVSW-NALI----------GGLVKIGDLRSARQLFDEMPER 262
             EA  VF  M     E + ++  NALI          G  V     ++    F      
Sbjct: 175 PYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNS 234

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           N++  T +++ YAK G    AR LF   P R++V+W+++I+ Y Q  +  EA+ +F DM 
Sbjct: 235 NIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMW 294

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCG 380
           +  + PD+   +S++S C+ +  L L   V +YL ++ +  D+S A    AL+DM AK G
Sbjct: 295 TSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLA---TALLDMYAKTG 351

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVL 439
            +  A ++F ++  RDVV + SMI GL++HG G +A+ +F  M  +  L PD + +  VL
Sbjct: 352 GLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVL 411

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
            ACSHVGLVE+  + F  M  +Y+IVP  EHY CMVDLL R+GH   A  L+ +M ++P+
Sbjct: 412 FACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPN 471

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
            S  GALL  C+++ ++ +   V  RL ELE   +G++VLLSNIYA A RW DV   R  
Sbjct: 472 ISIXGALLYGCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGTRKV 531

Query: 560 MKERGLRKIPGCSSL 574
           MK + + KI G SS+
Sbjct: 532 MKHKRITKIIGHSSV 546


>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 525

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 193/542 (35%), Positives = 289/542 (53%), Gaps = 70/542 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA---TPLSYSTAVFNRIV 97
           L L++KCK   HL Q H+ +   GLE +   ++  ++ C S       L+Y+  VF +I 
Sbjct: 9   LVLLEKCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLTYACRVFEQIQ 68

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           NP   ++NTL+K +  N++F     +FV++++ E  PD YT P V+KAC           
Sbjct: 69  NPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKAC----------- 117

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
                   G   D                                 S+  MI GY+S   
Sbjct: 118 --------GTFHDC--------------------------------SFGKMIHGYSSKLG 137

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
           LV     FD+         N+L+      GD+ +AR +FDE+P  NVVS++ MI GYAKV
Sbjct: 138 LV-----FDIYVG------NSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKV 186

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           GD+ SAR  F+ AP++D   W A+ISGY QN    E++ +F  M   ++ PDE I VS++
Sbjct: 187 GDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSIL 246

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           SAC+ +G L++  W+  +L++  +      +  +L+DM AKCGN++ A  LF++M  RDV
Sbjct: 247 SACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDV 306

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           V + +MI G+++HG G+ A+ LF  M   G+ PD++ F  V TACS+ G+  +G    + 
Sbjct: 307 VCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDK 366

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAY----ELLNSMPVEPHASAWGALLGACKLY 513
           M +VY IVP  EHY C+VDLL R G  + A     ++ NS        AW A L AC  +
Sbjct: 367 MCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNH 426

Query: 514 SDIELGELVANRLFELEPQ-NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            + +L EL A ++ +L+   ++G YVLLSN+YA + +  D   VR  MK +G  K PGCS
Sbjct: 427 GETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCS 486

Query: 573 SL 574
           S+
Sbjct: 487 SV 488


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 176/528 (33%), Positives = 303/528 (57%), Gaps = 16/528 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H ++IK G + D    A+ +   ++    L+ + +VF +I  P+   WN ++ G   + 
Sbjct: 280 IHGYLIKLGYDWD-PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +   +  ++ R    P+ +T    +KAC+ +     G  +H+++++  ++ D+FV  
Sbjct: 339 HHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSV 398

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
            L+D+Y K   +  AR  F+ +PE+++++W A+I GY+   + +EA ++F  M  +  + 
Sbjct: 399 GLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEM-HKEGIG 457

Query: 236 WNALI--------GGLVKIGDLRSARQL-FDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           +N            GL  +   R    L        ++    ++ID Y K   +  A  +
Sbjct: 458 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI 517

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE     D+V+++++I+ YAQ GQ +EA+K+F +M    ++PD F+  SL++AC+ +   
Sbjct: 518 FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAF 577

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           +    +  ++ +    L    + A  +LV+M AKCG++D A   F  +  R +VS+ +MI
Sbjct: 578 EQGKQLHVHILKYGFVLD---IFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMI 634

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            GL+ HGHGRQA+ LF++ML EG++P+ +    VL AC+H GLV +   +FE+M+ ++  
Sbjct: 635 GGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGF 694

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P  EHYACM+DLLGR G +  A EL+N MP E +AS WGALLGA +++ D+ELG   A 
Sbjct: 695 KPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAE 754

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            LF LEP+ +G++VLL+NIYA+A +W +V  VR  M++  ++K PG S
Sbjct: 755 MLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMS 802



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/564 (26%), Positives = 255/564 (45%), Gaps = 66/564 (11%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+HI K GL  D S+  H I+L +S      Y+  + +    P+   W+ L+ GY+QN
Sbjct: 77  QIHAHITKSGLSDDPSIRNHLINL-YSKCRNFGYARKLVDESSEPDLVSWSALISGYAQN 135

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                    F  +       +++TF  V+KACS V  +R G  +H  V+  G + DVFV 
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            +L+ +Y K  E   ++++FDE+PERNVVSW A+   Y  +    EA  +F  M     +
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIK 255

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSL 286
            +  S ++++     + D    + +   + +        S   ++D YAKVGD+  A S+
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISV 315

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE     D+V+W+A+I+G   +   ++A+++   M    + P+ F L S + AC+ +G  
Sbjct: 316 FEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +L   + S L +  M+ S   V   LVDM +KC  ++ A   F  +P +D++++ ++I G
Sbjct: 376 ELGRQLHSSLMKMDME-SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 434

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA------------------------- 441
            S +    +A+SLF  M  EG+  ++   + +L +                         
Sbjct: 435 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSD 494

Query: 442 -------------CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
                        CSH   VED  R FE        +     +  M+    + G  + A 
Sbjct: 495 IYVVNSLIDSYGKCSH---VEDAERIFEE-----CTIGDLVSFTSMITAYAQYGQGEEAL 546

Query: 489 EL---LNSMPVEPHASAWGALLGACKLYSDIELGELVANRL----FELEPQNAGSYVLLS 541
           +L   +  M ++P      +LL AC   S  E G+ +   +    F L+     S V   
Sbjct: 547 KLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV--- 603

Query: 542 NIYATADRWLDVCLVRSKMKERGL 565
           N+YA      D     S++ ERG+
Sbjct: 604 NMYAKCGSIDDAGRAFSELTERGI 627



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 198/393 (50%), Gaps = 12/393 (3%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           P   ++  ++  C    S+R G  IHA + + G+ +D  +   LI+LY K +    ARK+
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDL 249
            DE  E ++VSW+A+I GYA  G    A   F  M     + +  ++++++     + DL
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 250 RSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
           R  +Q+   +     E +V    T++  YAK  +   ++ LF+  P+R+VV+W+AL S Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            Q     EAV +F +M    ++P+EF L S+++AC+ + +      +  YL +   D   
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD- 292

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
                ALVDM AK G++  A  +FE +   D+VS+ ++I G  +H H  QA+ L  +M  
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
            G+ P+    +  L AC+ +GL E G +   ++  +  +         +VD+  +   L+
Sbjct: 353 SGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM-DMESDLFVSVGLVDMYSKCDLLE 411

Query: 486 SAYELLNSMPVEPHASAWGALL-GACKLYSDIE 517
            A    N +P E    AW A++ G  + + D+E
Sbjct: 412 DARMAFNLLP-EKDLIAWNAIISGYSQYWEDME 443


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 166/386 (43%), Positives = 246/386 (63%), Gaps = 5/386 (1%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR++F  MP R+V SW  M+ G +  G + EAK VF  MP R++VSWNA++ G    GD+
Sbjct: 99  ARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDM 158

Query: 250 RSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
            +A + F   PE+ + V +T M+ GY  +G++  A   FEA P R++V+W+A+++GY +N
Sbjct: 159 STAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKN 218

Query: 309 GQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
              D+A+++F  M  + NVQP+   L S++  CS +  L     +  +  +  + LSR  
Sbjct: 219 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK--LLLSRNL 276

Query: 368 VIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  +LV M  KCG++  A  LF  M  RDVV++ +MI G + HG G++A++LF+RM  E
Sbjct: 277 TVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G+ P+ + F +VLTAC H GL + G + FE MQ +Y I P  +HY+CMVDLL R G L+ 
Sbjct: 337 GVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A + + SMP EPH SA+G LL AC++Y ++E  EL A +L E +PQ+AG+YV L+NIYA 
Sbjct: 397 AVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAV 456

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
           A++W DV  VR  MK+  + K PG S
Sbjct: 457 ANQWDDVSRVRRWMKDNTVVKTPGYS 482



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 159/355 (44%), Gaps = 61/355 (17%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLL-----KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
           L+ +  +F+RI  P+   +NTLL      G +  +R         RL     V D  ++ 
Sbjct: 65  LADARHLFDRIPTPDVVSYNTLLLCHFASGDADGAR---------RLFASMPVRDVASWN 115

Query: 141 LVIKACSHVLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
            ++   S   +V E   +  A+ +R  V  +     +++  +    ++S A + F   PE
Sbjct: 116 TMVSGLSKSGAVEEAKVVFLAMPVRNSVSWN-----AMVSGFACSGDMSTAEEWFRNAPE 170

Query: 200 R-NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           + + V WTAM+ GY  +G++V+A   F+ MP R+ VSWNA++ G VK      A +LF  
Sbjct: 171 KEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRT 230

Query: 259 MPE----------------------------------------RNVVSYTTMIDGYAKVG 278
           M                                          RN+   T+++  Y K G
Sbjct: 231 MVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCG 290

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D++SA  LF     RDVVAW+A+ISGYAQ+G   EA+ +F  M  + V+P+    V +++
Sbjct: 291 DLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLT 350

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           AC   G  D        +   +    R    + +VD+  + G ++RA +   +MP
Sbjct: 351 ACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 166/428 (38%), Positives = 253/428 (59%), Gaps = 31/428 (7%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            +++  Y K ++   AR++FD MP +++VSW +M+ GY   G++      F+ M ER  V
Sbjct: 31  NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 90

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SWN ++ G V++GDL S+ + F+++P  N VS+ TM+ G+A+ G +  AR LF+  P R+
Sbjct: 91  SWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN 150

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNV---------------------------- 326
           VVAW+A+I+ Y QN   DEA+ +F +M  KN                             
Sbjct: 151 VVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPY 210

Query: 327 --QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
             +PD+      +S+C+ +  L +   +   + +S    +   V  AL+ M AKCG++  
Sbjct: 211 RNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYA-TDLFVSNALITMYAKCGSISS 269

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  LF+ + + DVVS+ S+I   +++G+GR+A+ LF +M  EG+ PDEV F  +L+ACSH
Sbjct: 270 AELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSH 329

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           VGL++ G + F+ M   Y I P  EHYACMVDLLGR G L+ A++L+  M +  +A  WG
Sbjct: 330 VGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWG 389

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGAC+++ ++EL +  A +L E EP    +YVLLSN+ A A RW +V  VR  MKE+G
Sbjct: 390 ALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKG 449

Query: 565 LRKIPGCS 572
             K PG S
Sbjct: 450 AEKQPGWS 457


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 176/449 (39%), Positives = 261/449 (58%), Gaps = 11/449 (2%)

Query: 132 AVPDKYTFPLVIKACSHVLS-VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
           A PD YT P  +KAC+ +   +REG   HA   + G    V V  +L+  YG   +   A
Sbjct: 113 ARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDA 172

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
           RKVFDEM ER+VVSWTA++  +   G  +EA  V   M    N    A +  LV  G+L 
Sbjct: 173 RKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTPNEVTLASV--LVACGNLG 230

Query: 251 SARQ-------LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           +AR         F    E N++    ++D Y K   +  AR +F+    RD+V+W+ +IS
Sbjct: 231 TARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMIS 290

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           G  Q  +P EA+++F+ M    V+PD+ +L +++SAC+ +G L+   WV  Y+ R  ++ 
Sbjct: 291 GLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEW 350

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
              HV  ++VDM  KCG +D A  +F+ MP ++V S+ ++I G ++HG GR+A+  FDRM
Sbjct: 351 D-VHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRM 409

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
           ++ GL P+EV F  VL AC H GLV++G + FE M   Y + P  +HY CMVDLLGR G 
Sbjct: 410 VASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGL 469

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           ++ AY+++ +MP+ P    W  LL AC+ +  ++  + +   + ELE    G YVLLSN+
Sbjct: 470 IQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNM 529

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCS 572
           YA +DRW DV   R  M E+G++K PG S
Sbjct: 530 YAVSDRWADVGKARGFMNEKGMQKEPGSS 558


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 291/492 (59%), Gaps = 10/492 (2%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP--DKYTFP 140
           A  ++ +  VF+ + + +   WN LL    +  R         R + +EA+P  D  ++ 
Sbjct: 28  AGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRH---HLPAARRLFDEAMPSRDVVSWN 84

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            +I  C     +   +A  A       + +V    +++    +   +  A+++FDEMPER
Sbjct: 85  SIIAGCLAHGDLDAASAYFAG----APERNVATWNAMLAGLVRLGRVVDAQRLFDEMPER 140

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           NVVS+T M+   A  G++  A+ VFD MP+R+ VSW A+I G V+ G    AR+LF+ MP
Sbjct: 141 NVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEARELFEAMP 200

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           E+NVV+ T MI G+ K GD+ SAR LF+    +DV++W+A+I+GY  NG  +EA+++ + 
Sbjct: 201 EKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHAL 260

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  + V+PD   L+++++ACS +  L       +   ++ ++ S      AL+ M +KCG
Sbjct: 261 MFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLE-SGISFSNALMTMYSKCG 319

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           N+  +  +F  +  +D+VS+ ++I   + HG  ++ ++LF  M   GL PD++ F  VL+
Sbjct: 320 NVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLS 379

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           AC HVG+V+   + F+ M + YAI P  EHYAC+VD+L R G L+ A   +  MP++   
Sbjct: 380 ACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEK 439

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           + WG+LLGAC+++ +++LGEL A  L + + Q++G YV+LSNIYA A  W  V  +R +M
Sbjct: 440 NVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQM 499

Query: 561 KERGLRKIPGCS 572
           KERG++K PG S
Sbjct: 500 KERGVKKQPGYS 511



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 154/308 (50%), Gaps = 74/308 (24%)

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAM----------------------------- 208
           I    +  +++ AR+VFD M  R+VVSW A+                             
Sbjct: 22  ISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVV 81

Query: 209 -----IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
                I G  + GDL  A   F   PER+  +WNA++ GLV++G +  A++LFDEMPERN
Sbjct: 82  SWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLFDEMPERN 141

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VVSYTTM+D  A+ G++  AR +F++ PDR++V+W+A+ISG  +NG   EA ++F  M  
Sbjct: 142 VVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEARELFEAMPE 201

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           KNV            AC+                             A++  + K G++D
Sbjct: 202 KNV-----------VACT-----------------------------AMITGHCKQGDVD 221

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  LF+ +  +DV+S+ +MI G   +GHG +A+ L   M  EG+ PD      VLTACS
Sbjct: 222 SARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACS 281

Query: 444 HVGLVEDG 451
            + L+  G
Sbjct: 282 ALALLRQG 289



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 24/290 (8%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG--DMTSARSLF-EAAPDR 293
           N  I  L + GD+ +AR++FD M  R+VVS+  ++    + G   + +AR LF EA P R
Sbjct: 19  NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           DVV+W+++I+G   +G  D A   F+    +NV     +L  L+          L   VD
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVR---------LGRVVD 129

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           +      M          +VD  A+ G ++RA E+F++MP+R++VS+ +MI G   +G  
Sbjct: 130 AQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMF 189

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A  LF+ M  + +    VA T ++T     G V+   R F+ ++    I      +  
Sbjct: 190 VEARELFEAMPEKNV----VACTAMITGHCKQGDVDSARRLFDGIRAKDVI-----SWNA 240

Query: 474 MVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLYSDIELGE 520
           M+      GH + A  L   M    V+P  +   A+L AC   + +  G+
Sbjct: 241 MIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGK 290



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 26/256 (10%)

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD--EAVK 316
           +  R ++     I   A+ GD+ +AR +F+A   RDVV+W+AL++   + G+     A +
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 317 IFSD-MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           +F + M S++V        S+++ C   G+LD ++   +     ++    A ++A LV  
Sbjct: 70  LFDEAMPSRDVVSWN----SIIAGCLAHGDLDAASAYFAGAPERNVATWNA-MLAGLV-- 122

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
             + G +  A  LF+ MP R+VVSY +M+  L+  G   +A  +FD M    L    V++
Sbjct: 123 --RLGRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNL----VSW 176

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSAYELLNS 493
             +++ C   G+  +    FEAM       P     AC   + G  + G + SA  L + 
Sbjct: 177 AAMISGCVENGMFVEARELFEAM-------PEKNVVACTAMITGHCKQGDVDSARRLFDG 229

Query: 494 MPVEPHASAWGALLGA 509
           +  +   S W A++  
Sbjct: 230 IRAKDVIS-WNAMIAG 244



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 103/258 (39%), Gaps = 49/258 (18%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L++ LT      L       H+  IK  LE   S     +++ +S    +  S  
Sbjct: 268 PDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTM-YSKCGNVGESEL 326

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   +   WNT++  Y+Q+ ++ +V  +F  +     +PD  TF  V+ AC HV  
Sbjct: 327 VFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHV-- 384

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS-----WT 206
                                    ++D          + K+FD M  +  +S     + 
Sbjct: 385 ------------------------GMVD---------ASLKLFDLMSSKYAISPRAEHYA 411

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVS-WNALIG-----GLVKIGDLRSARQLFDEMP 260
            ++   +  G L +A +    MP ++  + W +L+G     G V++G+L  A ++  +  
Sbjct: 412 CIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGEL--AAKMLVQSD 469

Query: 261 ERNVVSYTTMIDGYAKVG 278
            ++   Y  + + YA  G
Sbjct: 470 SQSSGPYVILSNIYAAAG 487


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 175/493 (35%), Positives = 274/493 (55%), Gaps = 39/493 (7%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           H  +  L+ +  VF  +    T  WN++L GYS     I+V       I E   PD +++
Sbjct: 15  HIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPE---PDIFSY 71

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
            +++ AC                                  Y    ++  AR  FD+MP 
Sbjct: 72  NIML-AC----------------------------------YLHNADVESARLFFDQMPV 96

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           ++  SW  MI G++  G + +A+ +F +MP R++VSWNA+I G V+ GDL  A+QLF+  
Sbjct: 97  KDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVA 156

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P R+VV++T MI G+ K G +  A   FE  P +++V W+A+I+GY +N Q +  +K+F 
Sbjct: 157 PVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFK 216

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M     +P+   L S++  CS +  L L   V   + +S +  +      +L+ M  KC
Sbjct: 217 RMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWN-ITAGTSLLSMYCKC 275

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G+++ A +LF  MP +DVV++ +MI G + HG G +A+ LFD+M  EG+ PD + F  VL
Sbjct: 276 GDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVL 335

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +AC+H G V+ G  +F +M   Y +   P+HY C+VDLLGR G L  A +L+  MP +PH
Sbjct: 336 SACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPH 395

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           ++ +G LLGAC+++ ++EL E  A  L  L+P++A  YV L+N+YA  +RW  V +VR  
Sbjct: 396 SAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRS 455

Query: 560 MKERGLRKIPGCS 572
           MK+  + K PG S
Sbjct: 456 MKDNKVIKTPGYS 468



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 159/316 (50%), Gaps = 28/316 (8%)

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV-KIGDLRSARQLFDEM 259
           NV+S   +I  +   GDL  A  VF+ M  ++ V+WN+++ G   + G ++ ARQLFD +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PE ++ SY  M+  Y    D+ SAR  F+  P +D  +W+ +ISG++QNG  D+A ++F 
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA-- 377
            M  +N         +++S   + G+LD        L++   +++    + A   M    
Sbjct: 124 VMPVRN----SVSWNAMISGYVESGDLD--------LAKQLFEVAPVRSVVAWTAMITGF 171

Query: 378 -KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
            K G ++ A + FE MP +++V++ +MI G   +      + LF RM+  G  P+  + +
Sbjct: 172 MKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLS 231

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-----ACMVDLLGRTGHLKSAYELL 491
            VL  CS++  ++ G +  +       I  SP  +       ++ +  + G L+ A++L 
Sbjct: 232 SVLLGCSNLSALKLGKQVHQ------LICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLF 285

Query: 492 NSMPVEPHASAWGALL 507
             MP +     W A++
Sbjct: 286 LVMP-QKDVVTWNAMI 300


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 299/529 (56%), Gaps = 15/529 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+ I+ +G    H+ V+  +   ++    +  S  VFN +   N   WN ++ G++ N 
Sbjct: 193 VHAQIVIRGF-TSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSND 251

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            +++ F +F+R++ E   PD  TF  V KA   +  V +   +    +  GVD +  VGT
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311

Query: 176 SLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS- 232
           +LID+  K   +  AR +F+   +  R    W AMI GY   G   +A  +F  M +   
Sbjct: 312 ALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 233 ---NVSWNALIGGL-----VKIGDLRSARQLFDEMPERNVVSYTTMI-DGYAKVGDMTSA 283
              + ++ ++   +     + +G    AR +   + E N VS +  + + YAK G +   
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL-EVNYVSISNAVANAYAKCGSLEDV 430

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R +F    DRD+++W++L++ Y+Q  + D+A++IFS+M ++ + P++F   S++ +C+ +
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANL 490

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             L+    V   + +  +D+ +  + +ALVDM AKCG +  A ++F  + N D VS+ ++
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKC-IESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAI 549

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + HG    A+ LF RM+  G+ P+ V F  VL ACSH GLVE+G ++F+ M+  Y 
Sbjct: 550 IAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYG 609

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           +VP  EHYAC+VDLL R GHL  A E ++ MPVEP+   W  LLGAC+++ ++ELGEL A
Sbjct: 610 LVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAA 669

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++   + +N+ +YVLLSN Y  +  + D   +R  MKE+G++K PGCS
Sbjct: 670 QKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCS 718



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 246/487 (50%), Gaps = 28/487 (5%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVA-HFISLCHSLATPLSYSTAVFNRIVN 98
           L++ C     L Q   VH  ++K      HSLV  + ++  +S  + +  +  +F+++  
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            NTF W  L+ G ++N  F++ F  F  +  +   PD++ +  +++ C  + S+  G  +
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA ++  G     FV T+L+++Y K +EI  + KVF+ M E NVVSW AMI G+ S    
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLY 253

Query: 219 VEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTM 270
           ++A  +F  +M E         IG    IG LR   +         +   + N +  T +
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 271 IDGYAKVGDMTSARSLFEA--APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ID  +K G +  ARS+F +     R    W+A+ISGY ++G  ++A+++F+ MC  ++  
Sbjct: 314 IDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL 373

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D +   S+ +A + +  L L   V +   +S ++++   +  A+ +  AKCG+++   ++
Sbjct: 374 DHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKV 433

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  M +RD++S+ S++   S      +A+ +F  M +EG+ P++  F+ VL +C+++ L+
Sbjct: 434 FNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLL 493

Query: 449 EDGWRFFEAMQNVYAIV--PSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           E G       Q V+ I+     +   C    +VD+  + G L  A ++ N +       +
Sbjct: 494 EYG-------QQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVS 545

Query: 503 WGALLGA 509
           W A++  
Sbjct: 546 WTAIIAG 552


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 199/538 (36%), Positives = 308/538 (57%), Gaps = 74/538 (13%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           I    L+T L Q H  +I  GL +D+  VA FI  C S A  L Y+ +VF     PNT+L
Sbjct: 23  IHGTNLKT-LKQSHCFMIITGLNRDNLNVAKFIEAC-SNAGHLRYAYSVFTHQPFPNTYL 80

Query: 104 WNTLLKGYS----QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            NT+++  S    +N+  I + T++ +     A PD +TFP V+K    V          
Sbjct: 81  HNTMIRALSLVDERNAHSIAI-TVYRKFWAFCAKPDTFTFPFVLKIVVRV---------- 129

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
                     DV+ G          +++     VF      +VV  T +I  Y+S G L 
Sbjct: 130 ---------SDVWFG----------RQVHGQAVVFGFDSSVHVV--TGLIQMYSSCGGL- 167

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                                      GD   AR++FDEM  R+V  +  ++ GY KVG+
Sbjct: 168 ---------------------------GD---ARKVFDEMRVRDVNVWNALLAGYGKVGE 197

Query: 280 MTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           M  AR L E  P   R+ V+W+ +ISGYA++G+  EA+++F  M  +NV PDE  L++++
Sbjct: 198 MDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVL 257

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRA-HVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           SAC+ +G+L+L   + SY+   H  ++RA  +  A++DM AK GN+ +A E+FE++  R+
Sbjct: 258 SACADLGSLELGERICSYVD--HRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERN 315

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VV++ ++I GL+ HGHG +A+ +FDRM+  G+ P++V F  +L+ACSHVG V+ G RFF 
Sbjct: 316 VVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFN 375

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           +M++ Y I P+ EHY CM+DLLGR G L+ A E++ SMP E +A+ WG+LL A  ++ DI
Sbjct: 376 SMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDI 435

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++GE    +L +LEP N+G+Y+LL+N+Y+   RW +  ++R  MK  G++K+ G SS+
Sbjct: 436 DVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSI 493


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 169/526 (32%), Positives = 304/526 (57%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  ++K GL+ D       + + +S A  +  + AVF  I +P+   WN ++ G   +
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDM-YSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   +   +      P+ +T    +KAC+ +     G  +H+++I+     D+F  
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PE 230
             L+D+Y K + +  AR+ +D MP++++++W A+I GY+  GD ++A ++F  M     +
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDID 382

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSL 286
            +  + + ++  +  +  ++  +Q+     +  + S      +++D Y K   +  A  +
Sbjct: 383 FNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKI 442

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE     D+VA++++I+ Y+Q G  +EA+K++  M   +++PD FI  SL++AC+ +   
Sbjct: 443 FEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAY 502

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +    +  +  +    +       +LV+M AKCG+++ A   F  +PNR +VS+ +MI G
Sbjct: 503 EQGKQLHVHAIKFGF-MCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGG 561

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + HGHG++A+ LF++ML +G+ P+ +    VL AC+H GLV +G ++FE M+ ++ I P
Sbjct: 562 YAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKP 621

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + EHYACM+DLLGR+G L  A EL+NS+P E     WGALLGA +++ +IELG+  A  L
Sbjct: 622 TQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKML 681

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           F+LEP+ +G++VLL+NIYA+A  W +V  VR  MK+  ++K PG S
Sbjct: 682 FDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMS 727



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 243/487 (49%), Gaps = 31/487 (6%)

Query: 42  TLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +++K C ++  L+   +VH   +  G E D   VA+ + + ++    L  S  +F  IV 
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESD-GFVANTLVVMYAKCGLLDDSRRLFGGIVE 145

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   WN L   Y Q+    E   +F  ++R   +P++++  +++ AC+ +     G  I
Sbjct: 146 RNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKI 205

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG--YASVG 216
           H  +++ G+D D F   +L+D+Y K  EI  A  VF ++   +VVSW A+I G       
Sbjct: 206 HGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCN 265

Query: 217 DLVEAKTVFDLMP---ERSNV-SWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYT 268
           DL  A  + D M     R N+ + ++ +     +G     RQL   +       ++ +  
Sbjct: 266 DL--ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAV 323

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++D Y+K   M  AR  +++ P +D++AW+ALISGY+Q G   +AV +FS M S+++  
Sbjct: 324 GLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDF 383

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           ++  L +++ + + +  + +   + +   +S +  S  +VI +L+D   KC ++D A+++
Sbjct: 384 NQTTLSTVLKSVASLQAIKVCKQIHTISIKSGI-YSDFYVINSLLDTYGKCNHIDEASKI 442

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE     D+V+Y SMI   S +G G +A+ L+ +M    + PD    + +L AC+++   
Sbjct: 443 FEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAY 502

Query: 449 EDGWRF------FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           E G +       F  M +++A          +V++  + G ++ A    + +P     S 
Sbjct: 503 EQGKQLHVHAIKFGFMCDIFA-------SNSLVNMYAKCGSIEDADRAFSEIPNRGIVS- 554

Query: 503 WGALLGA 509
           W A++G 
Sbjct: 555 WSAMIGG 561



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 235/481 (48%), Gaps = 32/481 (6%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+H+IK G  +D SL  H ++L +S      Y+  + +     +   W++LL GY QN
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTL-YSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +       +++TFP V+KACS    +  G  +H   +  G + D FV 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD------LM 228
            +L+ +Y K   +  +R++F  + ERNVVSW A+   Y       EA  +F       +M
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 229 PERSNVS--WNALIGGLVKIGDL-RSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSAR 284
           P   ++S   NA  G  ++ GDL R    L  +M  + +  S   ++D Y+K G++  A 
Sbjct: 181 PNEFSISIILNACAG--LQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
           ++F+     DVV+W+A+I+G   +   D A+ +  +M     +P+ F L S + AC+ +G
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 345 NLDLSNWVDSYLSR--SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
             +L   + S L +  +H DL  A     LVDM +KC  MD A   +++MP +D++++ +
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAA---VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I G S  G    AVSLF +M SE +  ++   + VL + + +  +       +  + ++
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAI-------KVCKQIH 408

Query: 463 AIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            I      Y+       ++D  G+  H+  A ++      E    A+ +++ A   Y D 
Sbjct: 409 TISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLV-AYTSMITAYSQYGDG 467

Query: 517 E 517
           E
Sbjct: 468 E 468


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 299/529 (56%), Gaps = 15/529 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+ I+ +G    H+ V+  +   ++    +  S  VFN +   N   WN ++ G++ N 
Sbjct: 193 VHAQIVIRGF-TSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSND 251

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            +++ F +F+R++ E   PD  TF  V KA   +  V +   +    +  GVD +  VGT
Sbjct: 252 LYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGT 311

Query: 176 SLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS- 232
           +LID+  K   +  AR +F+   +  R    W AMI GY   G   +A  +F  M +   
Sbjct: 312 ALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371

Query: 233 ---NVSWNALIGGL-----VKIGDLRSARQLFDEMPERNVVSYTTMI-DGYAKVGDMTSA 283
              + ++ ++   +     + +G    AR +   + E N VS +  + + YAK G +   
Sbjct: 372 YLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL-EVNYVSISNAVANAYAKCGSLEDV 430

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R +F    DRD+++W++L++ Y+Q  + D+A++IFS+M ++ + P++F   S++ +C+ +
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANL 490

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             L+    V   + +  +D+ +  + +ALVDM AKCG +  A ++F  + N D VS+ ++
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKC-IESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAI 549

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + HG    A+ LF RM+  G+ P+ V F  VL ACSH GLVE+G ++F+ M+  Y 
Sbjct: 550 IAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYG 609

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           +VP  EHYAC+VDLL R GHL  A E ++ MPVEP+   W  LLGAC+++ ++ELGEL A
Sbjct: 610 LVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAA 669

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++   + +N+ +YVLLSN Y  +  + D   +R  MKE+G++K PGCS
Sbjct: 670 QKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCS 718



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 246/487 (50%), Gaps = 28/487 (5%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVA-HFISLCHSLATPLSYSTAVFNRIVN 98
           L++ C     L Q   VH  ++K      HSLV  + ++  +S  + +  +  +F+++  
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            NTF W  L+ G ++N  F++ F  F  +  +   PD++ +  +++ C  + S+  G  +
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA ++  G     FV T+L+++Y K +EI  + KVF+ M E NVVSW AMI G+ S    
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLY 253

Query: 219 VEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTM 270
           ++A  +F  +M E         IG    IG LR   +         +   + N +  T +
Sbjct: 254 LDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTAL 313

Query: 271 IDGYAKVGDMTSARSLFEA--APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ID  +K G +  ARS+F +     R    W+A+ISGY ++G  ++A+++F+ MC  ++  
Sbjct: 314 IDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYL 373

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D +   S+ +A + +  L L   V +   +S ++++   +  A+ +  AKCG+++   ++
Sbjct: 374 DHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKV 433

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  M +RD++S+ S++   S      +A+ +F  M +EG+ P++  F+ VL +C+++ L+
Sbjct: 434 FNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLL 493

Query: 449 EDGWRFFEAMQNVYAIV--PSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           E G       Q V+ I+     +   C    +VD+  + G L  A ++ N +       +
Sbjct: 494 EYG-------QQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVS 545

Query: 503 WGALLGA 509
           W A++  
Sbjct: 546 WTAIIAG 552


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 294/526 (55%), Gaps = 11/526 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+H+IK G   D  +++  + + ++       +  +F+ +   +   WN ++  Y Q+ 
Sbjct: 128 VHTHVIKSGFAMDVVVMSSAVGM-YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           +  +   +F  +      PD  T   VI +C+ +L +  G  IH  ++R G   D FV +
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L+D+YGK   +  A++VF+++  +NVVSW +MI GY+  GD      +F  M E     
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306

Query: 232 SNVSWNALIGGLVKIGDLRSAR----QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           +  + ++++    +  +L+  +     +     E ++   +++ID Y K G++ SA ++F
Sbjct: 307 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 366

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P  +VV+W+ +ISGY + G   EA+ IF+DM    V+PD     S++ ACSQ+  L+
Sbjct: 367 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 426

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               + +++  S ++++   V+ AL+DM AKCG +D A  +F  +P RD VS+ SMI   
Sbjct: 427 KGKEIHNFIIESKLEINEV-VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAY 485

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
             HG   +A+ LF++M      PD+V F  +L+ACSH GLV++G  +F  M   Y   P+
Sbjct: 486 GSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPA 545

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALLGACKLYSDIELGELVANRL 526
            EHY+C++DLLGR G L+ AYE+L   P +         L  AC L+  ++LGE +   L
Sbjct: 546 VEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLL 605

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E +P +  +Y++LSN+YA+  +W +V  VR K+KE GL+K PGCS
Sbjct: 606 IEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCS 651



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/489 (29%), Positives = 249/489 (50%), Gaps = 31/489 (6%)

Query: 41  LTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFN 94
           L+L+K C    +L Q   +H  I+  GL+ + +L    I+L   CH   +    +  VF 
Sbjct: 7   LSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQS----AKLVFQ 62

Query: 95  RIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSV 152
            I NP +  LWN L+   ++N  FIE   +F RL+    + PD +T+P V+KACS +  V
Sbjct: 63  TIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRV 122

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  +H  VI+ G   DV V +S + +Y K      A K+FDEMPER+V SW  +I  Y
Sbjct: 123 GYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCY 182

Query: 213 ASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--- 265
              G   +A  +F+ M     +  +V+   +I    ++ DL   +++  E+         
Sbjct: 183 YQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDG 242

Query: 266 -SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
              + ++D Y K G +  A+ +FE    ++VV+W+++I+GY+  G     +++F  M  +
Sbjct: 243 FVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEE 302

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            ++P    L S++ ACS+  NL L  ++  Y+ R+ ++ +   V ++L+D+  KCGN+  
Sbjct: 303 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVE-ADIFVNSSLIDLYFKCGNIGS 361

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F+ MP  +VVS+  MI G    G   +A+ +F  M   G+ PD + FT VL ACS 
Sbjct: 362 AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQ 421

Query: 445 VGLVEDGWR----FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           + ++E G        E+   +  +V        ++D+  + G +  A  + N +P E   
Sbjct: 422 LAVLEKGKEIHNFIIESKLEINEVV-----MGALLDMYAKCGAVDEALHIFNQLP-ERDF 475

Query: 501 SAWGALLGA 509
            +W +++ A
Sbjct: 476 VSWTSMIAA 484


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 294/526 (55%), Gaps = 11/526 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+H+IK G   D  +++  + + ++       +  +F+ +   +   WN ++  Y Q+ 
Sbjct: 320 VHTHVIKSGFAMDVVVMSSAVGM-YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 378

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           +  +   +F  +      PD  T   VI +C+ +L +  G  IH  ++R G   D FV +
Sbjct: 379 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 438

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L+D+YGK   +  A++VF+++  +NVVSW +MI GY+  GD      +F  M E     
Sbjct: 439 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 498

Query: 232 SNVSWNALIGGLVKIGDLRSAR----QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           +  + ++++    +  +L+  +     +     E ++   +++ID Y K G++ SA ++F
Sbjct: 499 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 558

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P  +VV+W+ +ISGY + G   EA+ IF+DM    V+PD     S++ ACSQ+  L+
Sbjct: 559 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 618

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               + +++  S ++++   V+ AL+DM AKCG +D A  +F  +P RD VS+ SMI   
Sbjct: 619 KGKEIHNFIIESKLEINEV-VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAY 677

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
             HG   +A+ LF++M      PD+V F  +L+ACSH GLV++G  +F  M   Y   P+
Sbjct: 678 GSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPA 737

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALLGACKLYSDIELGELVANRL 526
            EHY+C++DLLGR G L+ AYE+L   P +         L  AC L+  ++LGE +   L
Sbjct: 738 VEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLL 797

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E +P +  +Y++LSN+YA+  +W +V  VR K+KE GL+K PGCS
Sbjct: 798 IEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCS 843



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 240/471 (50%), Gaps = 28/471 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNP-NTFLWNTLLKGY 111
           +H  I+  GL+ + +L    I+L   CH   +    +  VF  I NP +  LWN L+   
Sbjct: 217 IHQKIVSLGLQNNITLCKSLINLYFSCHLFQS----AKLVFQTIENPLDITLWNGLMAAC 272

Query: 112 SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           ++N  FIE   +F RL+    + PD +T+P V+KACS +  V  G  +H  VI+ G   D
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP- 229
           V V +S + +Y K      A K+FDEMPER+V SW  +I  Y   G   +A  +F+ M  
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 230 ---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV----SYTTMIDGYAKVGDMTS 282
              +  +V+   +I    ++ DL   +++  E+            + ++D Y K G +  
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A+ +FE    ++VV+W+++I+GY+  G     +++F  M  + ++P    L S++ ACS+
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
             NL L  ++  Y+ R+ ++ +   V ++L+D+  KCGN+  A  +F+ MP  +VVS+  
Sbjct: 513 SVNLQLGKFIHGYIIRNRVE-ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 571

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR----FFEAM 458
           MI G    G   +A+ +F  M   G+ PD + FT VL ACS + ++E G        E+ 
Sbjct: 572 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 631

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
             +  +V        ++D+  + G +  A  + N +P E    +W +++ A
Sbjct: 632 LEINEVV-----MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAA 676



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 181/374 (48%), Gaps = 14/374 (3%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYA 213
           G  IH  ++  G+  ++ +  SLI+LY        A+ VF  +    ++  W  ++    
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALI--------GGLVKIGDLRSAR-QLFDEMPERNV 264
                +E   VF  +     +  +A           GL ++G  +     +       +V
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V  ++ +  YAK      A  LF+  P+RDV +W+ +IS Y Q+GQP++A+++F +M   
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 393

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
             +PD   L +++S+C+++ +L+    +   L RS   L    V +ALVDM  KCG ++ 
Sbjct: 394 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD-GFVSSALVDMYGKCGCLEM 452

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A E+FE +  ++VVS+ SMI G S+ G  +  + LF RM  EG+ P     + +L ACS 
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
              ++ G +F         +       + ++DL  + G++ SA  +  +MP + +  +W 
Sbjct: 513 SVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSWN 570

Query: 505 ALL-GACKLYSDIE 517
            ++ G  K+ S +E
Sbjct: 571 VMISGYVKVGSYLE 584


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 304/553 (54%), Gaps = 24/553 (4%)

Query: 34  PSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLS 87
           P C+  A +L+  C     L+   Q+HS+++K G+  D+ +    + L   C  +   L 
Sbjct: 242 PDCVTIA-SLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
               +F      N  LWN +L  Y Q S   + F +F +++     P+++T+P +++ C+
Sbjct: 301 ----IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           +   +  G  IH   I+ G + D++V   LID+Y K   +  AR++ + +  ++VVSWT+
Sbjct: 357 YAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTS 416

Query: 208 MIVGYASVGDLVEA------KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP- 260
           MI GY       EA        +F + P+  N+   + I     I  +R  +Q+   +  
Sbjct: 417 MIAGYVQHEFCKEALETFKDMQLFGIWPD--NIGLASAISACAGIKAMRQGQQIHSRVYV 474

Query: 261 ---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                +V  +  +++ YA+ G    A SLFEA   +D + W+ ++SG+AQ+G  +EA+++
Sbjct: 475 SGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEV 534

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M    V+ + F  VS +SA + + ++     + + + ++    S   V  AL+ +  
Sbjct: 535 FIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCT-SETEVANALISLYG 593

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG+++ A   F  M  R+ VS+ ++I   S HG G +A+ LFD+M  EGL P++V F  
Sbjct: 594 KCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIG 653

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           VL ACSHVGLVE+G  +F++M + + I P P+HYAC+VD+LGR G L  A + +  MPV 
Sbjct: 654 VLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVS 713

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
            +A  W  LL AC+++ +IE+GEL A  L ELEP ++ SYVLLSN YA   +W     VR
Sbjct: 714 ANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVR 773

Query: 558 SKMKERGLRKIPG 570
             MK+RG+RK PG
Sbjct: 774 KMMKDRGVRKEPG 786



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 208/449 (46%), Gaps = 15/449 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+  I  GL +D       I L ++    +  +  VF ++   +   W  +L GY++N 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDL-YAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              E   ++ ++     VP  Y    V+ AC+      +G  +HA V + G   +  VG 
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------P 229
           +LI LY +   +S A +VF EMP  + V++  +I  +A  G+   A  +F+ M      P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARS 285
           +   ++  +L+     IGDL   +QL   + +  +    +   +++D Y K G +  A  
Sbjct: 243 DCVTIA--SLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F++    +VV W+ ++  Y Q     ++  +F  M +  V+P+EF    L+  C+  G 
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           ++L   +     ++  + S  +V   L+DM +K G +D+A  + E +  +DVVS+ SMI 
Sbjct: 361 INLGEQIHLLSIKTGFE-SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIA 419

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G   H   ++A+  F  M   G+ PD +     ++AC+ +  +  G +    +  V    
Sbjct: 420 GYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVY-VSGYS 478

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSM 494
                +  +V+L  R G  K A+ L  ++
Sbjct: 479 ADVSIWNALVNLYARCGRSKEAFSLFEAI 507



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 224/489 (45%), Gaps = 16/489 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L+   K  L      VH+ + K+G   +  +    I+L     + LS +  
Sbjct: 141 PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGS-LSLAER 199

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   +NTL+  ++Q         IF  +      PD  T   ++ AC+ +  
Sbjct: 200 VFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGD 259

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +G  +H+ +++ G+  D  +  SL+DLY K   I  A ++F      NVV W  M+V 
Sbjct: 260 LNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVA 319

Query: 212 YASVGDLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQL----FDEMPERN 263
           Y  + DL ++  +F  M     R N  ++  L+      G++    Q+         E +
Sbjct: 320 YGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESD 379

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +     +ID Y+K G +  AR + E    +DVV+W+++I+GY Q+    EA++ F DM  
Sbjct: 380 MYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQL 439

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDS--YLSRSHMDLSRAHVIAALVDMNAKCGN 381
             + PD   L S +SAC+ +  +     + S  Y+S    D+S   +  ALV++ A+CG 
Sbjct: 440 FGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVS---IWNALVNLYARCGR 496

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
              A  LFE + ++D +++  M+ G +  G   +A+ +F +M   G+  +   F   ++A
Sbjct: 497 SKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISA 556

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
            +++  ++ G +    +          E    ++ L G+ G ++ A      M    H S
Sbjct: 557 SANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS 615

Query: 502 AWGALLGAC 510
            W  ++ +C
Sbjct: 616 -WNTIITSC 623


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 305/565 (53%), Gaps = 53/565 (9%)

Query: 55  QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           QVH  ++K GLE D    +SL+ HF + C      +     +F+ ++  N   W +L+ G
Sbjct: 151 QVHGAVLKMGLEGDIFVSNSLI-HFYAEC----GKVDLGRKLFDGMLERNVVSWTSLING 205

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           YS      E  ++F ++      P+  T   VI AC+ +  +  G  + + +   G++  
Sbjct: 206 YSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELS 265

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY------------------ 212
             +  +L+D+Y K  +I  AR++FDE   +N+V +  ++  Y                  
Sbjct: 266 TIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQ 325

Query: 213 -----------------ASVGDLVEAKTVFDLMPERSNVSW----NALIGGLVKIGDLRS 251
                            A +GDL   K+    +       W    NA+I   +K G   +
Sbjct: 326 KGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREA 385

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           A ++F+ MP + VV++ ++I G  + GDM  A  +F+   +RD+V+W+ +I    Q    
Sbjct: 386 ACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMF 445

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS--HMDLSRAHVI 369
           +EA+++F +M ++ +  D   +V + SAC  +G LDL+ WV +Y+ ++  H+DL      
Sbjct: 446 EEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLG--- 502

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            ALVDM ++CG+   A  +F+ M  RDV ++ + I  +++ G+   A+ LF+ ML + + 
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVK 562

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD+V F  +LTACSH G V+ G + F +M+  + I P   HY CMVDLLGR G L+ A +
Sbjct: 563 PDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVD 622

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
           L+ SMP+EP+   WG+LL AC+ + ++EL    A +L +L P+  G +VLLSNIYA+A +
Sbjct: 623 LIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGK 682

Query: 550 WLDVCLVRSKMKERGLRKIPGCSSL 574
           W DV  VR +MKE+G++K+PG SS+
Sbjct: 683 WTDVARVRLQMKEKGVQKVPGSSSI 707



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 245/460 (53%), Gaps = 21/460 (4%)

Query: 17  SSMLPNCSRSAPINFPK--PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGL--EQDHSLV 72
           +++ P+ +   P +  +  P    S+  L+  CK    L Q+H  ++KKGL   +  S +
Sbjct: 3   TTLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNL 62

Query: 73  AHFISLCHSLAT--PLSYSTAVFNRIVN--PNTFLWNTLLKGYSQNSRFIEVFTIFVRLI 128
              I+    + T   L Y+   F        + F++N L++GY+      +   ++V+++
Sbjct: 63  NKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQML 122

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
               VPDKYTFP ++ ACS +L++ EG  +H AV++ G++ D+FV  SLI  Y +  ++ 
Sbjct: 123 VMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVD 182

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLV 244
             RK+FD M ERNVVSWT++I GY+      EA ++F  M E     + V+   +I    
Sbjct: 183 LGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242

Query: 245 KIGDLRSARQLFDEMPERNVVSYTTM----IDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
           K+ DL   +++   + E  +   T M    +D Y K GD+ +AR +F+   ++++V ++ 
Sbjct: 243 KLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNT 302

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           ++S Y  +    + + I  +M  K  +PD+  ++S ++AC+Q+G+L +     +Y+ R+ 
Sbjct: 303 IMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNG 362

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           ++    ++  A++DM  KCG  + A ++FE MPN+ VV++ S+I GL   G    A  +F
Sbjct: 363 LE-GWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIF 421

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
           D ML      D V++  ++ A   V + E+    F  MQN
Sbjct: 422 DEMLER----DLVSWNTMIGALVQVSMFEEAIELFREMQN 457


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 302/557 (54%), Gaps = 15/557 (2%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           PI+   P+  L  L+L +  K     HQ+++ I+   L +   L    I   +     L 
Sbjct: 8   PISSRNPTKTL--LSLFRFTKTLASNHQLNAQILVNALHRS-LLFGPMIFGAYIQLGSLH 64

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
            ++  FN I   N   WNT+L  +S+N  F +V  +F R+++E  + D +     +KAC 
Sbjct: 65  VASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACF 124

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +   +     H+  I+  ++ D +V  +L+++Y +   +  A KVF+E+P +N V W  
Sbjct: 125 GLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGV 184

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALI-GGLVKI-GDLRSARQ--------LFD 257
           MI G+ +  +      +F  M  RS    +  +  GL++  G++ + ++        +  
Sbjct: 185 MIKGHLNFSEEFGVFELFSRM-RRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKK 243

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
              + N    T+++D Y K G +  A  LFE    RDVV WSA+I+G+A+NG+  E++ +
Sbjct: 244 NFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISM 303

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M + +V P+     S++ ACS +G+L     V  Y+ R+ ++L   +   + +DM A
Sbjct: 304 FRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNY-TSFIDMYA 362

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG +  A  +F  +P ++V S+ +MI G  +HG   +A++LF  M S    P+ V F  
Sbjct: 363 KCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVS 422

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           VL+ACSH G +E+GW  F++M   Y I P  EHYACMVDLLGR G +  A   +N+MP E
Sbjct: 423 VLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTE 482

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           P ASAWGALLGAC+++   EL E VA +L  LE   +G YV+LSNIYA    W  V   R
Sbjct: 483 PGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTR 542

Query: 558 SKMKERGLRKIPGCSSL 574
            KM E+G+ KI G +S+
Sbjct: 543 LKMCEKGIHKIVGFTSI 559


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/588 (30%), Positives = 313/588 (53%), Gaps = 74/588 (12%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH  I+K G  ++ SL  + + L +S    L     +F ++ + +   WNT++  Y   
Sbjct: 154 EVHGRILKCGFGRNKSLNNNLMGL-YSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLK 212

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR---W------ 165
             + E   +F  ++    +PD+ T   ++  C+ +  +  G  +H  ++    W      
Sbjct: 213 GMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL 272

Query: 166 -----------GVDE-------------DVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
                       +DE             DV + T+L+  Y K  +I  AR++FD+M ER+
Sbjct: 273 NCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERS 332

Query: 202 VVSWTAMIVGYASVGDLVEAKTVF------DLMPERSN---------------------- 233
           +VSWT M+ GY   G   E+  +F      +++P+                         
Sbjct: 333 LVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHA 392

Query: 234 --VSWNALIGGLV---------KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
             V++  L+ G +         K G L  A + F+++P ++  S+ +M+DG+ + G +  
Sbjct: 393 FIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDK 452

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR  F   P++D+V+W+ +++ Y ++   +E+ +IF  M S NV+PD+  L+SL+S+C++
Sbjct: 453 ARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAK 512

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           VG L+   WV+ Y+ ++ + +  A +  AL+DM  KCG ++ A E+F  +  ++V  + +
Sbjct: 513 VGALNHGIWVNVYIEKNEIGID-AMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTA 571

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           M+   ++ G   +A+ L+  M   G+ PD V F  +L ACSH GLV++G+++F  +++ Y
Sbjct: 572 MMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFY 631

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I+P+  HY CMVDLLGR GHL+   + +  MP+EP  S W +L+ AC+ + ++EL E  
Sbjct: 632 NIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQA 691

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
             +L E++P N G++VLLSNIYA A RW DV  VR+K+ E G+ K PG
Sbjct: 692 FKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPG 739



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/569 (24%), Positives = 249/569 (43%), Gaps = 81/569 (14%)

Query: 17  SSMLPNCSRSAPINFPKPSCLLS---ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVA 73
           SS+ P+  +   +N      +L     + L+K C        +H+H+I   L  D  + +
Sbjct: 12  SSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITS 71

Query: 74  HFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
             ++   S+   L  +  + +    P + +WNTLL+   +     EV   +  ++ +  +
Sbjct: 72  QVLAFLLSVNN-LDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVL 130

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
            D  TF  +I AC     V+ G+ +H  +++ G   +  +  +L+ LY K  ++    ++
Sbjct: 131 LDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQL 190

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD------LMPER---------------- 231
           F++M  R+V+SW  MI  Y   G   EA  +FD      ++P+                 
Sbjct: 191 FEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDL 250

Query: 232 -----------SNVSW------NALIGGLVKIGDLRSARQLFDEMPER--NVVSYTTMID 272
                       N  W      N L+    K G +  A  L     E   +VV +TT++ 
Sbjct: 251 EMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVS 310

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           GY K   +  AR LF+   +R +V+W+ ++SGY Q G   E++++F  M  +NV PDE  
Sbjct: 311 GYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVA 370

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           LV+++SAC  + + DL   V +++    M L    +  AL+D+ AKCG +D A   FE +
Sbjct: 371 LVTVLSACVHLEDFDLGRSVHAFIVTYGM-LVDGFLGNALLDLYAKCGKLDEALRTFEQL 429

Query: 393 -------------------------------PNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
                                          P +D+VS+ +M+     H    ++  +F 
Sbjct: 430 PCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFC 489

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDG-WRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           +M S  + PD+     +L++C+ VG +  G W      +N   I         ++D+ G+
Sbjct: 490 KMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGI--DAMLGTALIDMYGK 547

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G ++ AYE+   + +E +   W A++ A
Sbjct: 548 CGCVEMAYEIFTQI-IEKNVFVWTAMMAA 575


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/546 (34%), Positives = 288/546 (52%), Gaps = 34/546 (6%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P+ F   +  L  L    + K  T   ++H H +K     D S V H ++  +     + 
Sbjct: 2   PLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSS-VLHKLTRLYLSCNQVV 60

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
            +  +F+ I NP+  LWN +++ Y+ N  F     ++  ++     P+KYT+P V+KACS
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +L++ +G  IH+    +G++ DVFV T+L+D Y                          
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFY-------------------------- 154

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
                A  G LVEA+ +F  M  R  V+WNA+I G    G    A QL  +M E  +   
Sbjct: 155 -----AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPN 209

Query: 268 TTMIDGYAKVGD-MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
           ++ I G       +  AR +F+    R+ V+WSA+I GY  +    EA+ IF  M    +
Sbjct: 210 SSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGI 269

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            PD   ++ ++ ACS +  L        YL       +   +  AL+DM +KCG +  A 
Sbjct: 270 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFA-TDTLICNALIDMYSKCGKISFAR 328

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
           E+F  M   D+VS+ +MI G  IHG G +A+ LF  +L+ GL PD++ F  +L++CSH G
Sbjct: 329 EVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 388

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           LV +G  +F+AM   ++IVP  EH  CMVD+LGR G +  A+  + +MP EP    W AL
Sbjct: 389 LVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           L AC+++ +IELGE V+ ++  L P++ G++VLLSNIY+ A RW D   +R   K+ GL+
Sbjct: 449 LSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508

Query: 567 KIPGCS 572
           KIPGCS
Sbjct: 509 KIPGCS 514


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/529 (34%), Positives = 298/529 (56%), Gaps = 16/529 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  I   G E D  + +  I   +S    +  +  +F+R+ + +  LWN +L GY +N 
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKF-YSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            +     +F+ + R E  P+  TF  V+  C+  + +  G+ +H  V+  G++ D  V  
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 176 S--LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPER- 231
           +  LID+Y K +++  ARK+FD+    ++V  TAMI GY   G    A  +F  L+ ER 
Sbjct: 288 TFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 347

Query: 232 --SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARS 285
             ++V+  +++     +  L   ++L   + +     +    + ++D YAK G +  A  
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 407

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            F    D+D V W+++I+  +QNG+P+EA+ +F  M     + D   + + +SAC+ +  
Sbjct: 408 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 467

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           L     + +++ R      R+ + A  AL+DM +KCGN+D A  +F+TM  ++ VS+ S+
Sbjct: 468 LHYGKEIHAFMMRGAF---RSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSI 524

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I     HG  + +++LF  ML +G+ PD V F  +++AC H G V++G  +F  M     
Sbjct: 525 IAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELG 584

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I+   EHYACMVDL GR G L  A+ ++NSMP  P A  WG LLGAC+L+ ++EL E+ +
Sbjct: 585 IMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVAS 644

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             LF+L+PQN+G YVLLSN++A A +W  V  +RS MKERG++K+PGCS
Sbjct: 645 RNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCS 693



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 211/420 (50%), Gaps = 21/420 (5%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN +++G++   +F      + +++    +PDKYTFP VIKAC  + SV  G  +H  + 
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
             G + DVFVG+SLI  Y +   I  AR +FD MP ++ V W  M+ GY   GD   A  
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATG 234

Query: 224 VFDLMPERSNVSWNALIGGLV--------------KIGDLRSARQLFDEMPERNVVSYTT 269
           VF  M  R+  + N++    V              ++  L  +  L  + P  N  +   
Sbjct: 235 VFMEM-RRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFA--- 290

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID Y K  D+  AR +F+     D+V  +A+ISGY  NG  + A++IF  +  + ++ +
Sbjct: 291 LIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRAN 350

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              L S++ AC+ +  L L   +  ++ ++    S  +V +A++DM AKCG +D A + F
Sbjct: 351 SVTLASVLPACAGLAALTLGKELHGHILKNGHGGS-CYVGSAIMDMYAKCGRLDLAHQTF 409

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             + ++D V + SMI   S +G   +A+ LF +M   G   D V+ +  L+AC+++  + 
Sbjct: 410 IGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALH 469

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G +   A     A        + ++D+  + G+L  A  + ++M  E +  +W +++ A
Sbjct: 470 YG-KEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAA 527



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 170/379 (44%), Gaps = 13/379 (3%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++ C+    + +G   HA ++  G+  +  +GT L+ +Y        A+ +F ++    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 202 VVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWN-ALIGGLVKIGDLRSARQ 254
              W  MI G+  +G    A   +        +P++    +     GGL  +   R    
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 255 LFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
               M  E +V   +++I  Y++ G +  AR LF+  P +D V W+ +++GY +NG  D 
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL-SRAHVIAAL 372
           A  +F +M      P+      ++S C+    ++  + +   +  S +++ S      AL
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFAL 291

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           +D+  KC +++ A ++F+     D+V   +MI G  ++G    A+ +F  +L E +  + 
Sbjct: 292 IDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANS 351

Query: 433 VAFTIVLTACSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           V    VL AC+ +  +  G       ++N +    S    + ++D+  + G L  A++  
Sbjct: 352 VTLASVLPACAGLAALTLGKELHGHILKNGHG--GSCYVGSAIMDMYAKCGRLDLAHQTF 409

Query: 492 NSMPVEPHASAWGALLGAC 510
             +  +  A  W +++ +C
Sbjct: 410 IGIS-DKDAVCWNSMITSC 427



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 21/292 (7%)

Query: 34  PSCL-LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           P+C  L+ALTL K         ++H HI+K G       V   I   ++    L  +   
Sbjct: 359 PACAGLAALTLGK---------ELHGHILKNG-HGGSCYVGSAIMDMYAKCGRLDLAHQT 408

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F  I + +   WN+++   SQN +  E   +F ++       D  +    + AC+++ ++
Sbjct: 409 FIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 468

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  IHA ++R     D+F  ++LID+Y K   +  A +VFD M E+N VSW ++I  Y
Sbjct: 469 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAY 528

Query: 213 ASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----N 263
            + G L ++  +F  M     +  +V++ A+I      G +      F  M E       
Sbjct: 529 GNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMAR 588

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEA 314
           +  Y  M+D + + G +  A  +  + P   D   W  L+     +G  + A
Sbjct: 589 MEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA 640


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 300/528 (56%), Gaps = 50/528 (9%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWN 105
           CK    L Q+H+ +IK    +D    A  +     S    L Y+  +F  +  PN F +N
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           TL++  S+++   +   +F+ ++ + +V P+ +TFP V KAC     +REG  +H   ++
Sbjct: 81  TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVK 140

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
           +G+D D FV ++++ +Y     +SC                          G + +A  +
Sbjct: 141 FGLDSDEFVVSNVVRMY-----LSC--------------------------GVMEDAHRL 169

Query: 225 FDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           F              + G   I D +  R++     + +VV +  MIDGY ++G++  AR
Sbjct: 170 F---------YRRVFVDGCDGIRDKK--RRV-----DGDVVLWNVMIDGYVRIGELEVAR 213

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
           +LF+  P R VV+W+ +I+GYAQ+G   EAV++F +M    V P+   LVS++ A S++G
Sbjct: 214 NLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLG 273

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            L+L  WV  Y  R+++ +    + +AL+DM AKCG++++A ++FE +P R+VV++ ++I
Sbjct: 274 ALELGKWVHLYAVRNNIGVDDV-LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTII 332

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            GL++HG  +  +  F+ M   G+ P +V +  +L+ACSH GLV +G  FF+ M  V  +
Sbjct: 333 AGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGL 392

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P  EHY CMVDLLGR G L+ + EL+ +MP++P    W ALLGACK++ ++E+G+ VA 
Sbjct: 393 EPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAE 452

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            L EL P ++GSYV LSNIYA+   W  V  VR  MKE  +RK PGCS
Sbjct: 453 HLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCS 500


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 298/521 (57%), Gaps = 29/521 (5%)

Query: 74  HFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132
           HF +   +  T L   T +FN+  +  + + WN+L+   ++     E    F  + + + 
Sbjct: 22  HFSTTAAATNTNL---TTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDI 78

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
            P++ TFP  IK+CS +  +  G   H   + +G + D+FV ++LID+Y K  ++S AR 
Sbjct: 79  KPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARV 138

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNAL---IGGLVKIGD 248
           +FDE+P RN+V+WT++I GY    D  EA  VF + + E+S  +   +   +  +  I  
Sbjct: 139 LFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISV 198

Query: 249 LRSARQLFDEMPERNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           L +  ++ ++     V                 T++D YAK G+++ +R +F+   ++DV
Sbjct: 199 LSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDV 258

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWV-D 353
           V+W+++I+ YAQNG   +A ++F  M  +   + +E  L +L+ AC+  G L +   + D
Sbjct: 259 VSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHD 318

Query: 354 SYLSRSHMDLSRAHVIAA--LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
             +   +++    +VI A  ++DM  KCG  + A   F+ M  ++V S+ +MI G  +HG
Sbjct: 319 QVIKMGYVN----NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHG 374

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
             R+A+ +F +M+  G+ P+ + F  VL ACSH G +E+GWR+F AM + Y + P  EHY
Sbjct: 375 FAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHY 434

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
            CMVDLLGR G++K AY L+ SM V      WG+LL AC+++ D+EL E+ A  LF+L+P
Sbjct: 435 GCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDP 494

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            N G YVLL+NIYA A RW DV  +R  +K+RGL K PG S
Sbjct: 495 SNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYS 535


>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 285/546 (52%), Gaps = 70/546 (12%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVF 93
           SC    L L++KCK   HL Q H+ +   GL+ +   ++  ++ C H     L+Y+  VF
Sbjct: 3   SCSKRCLVLLEKCKNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVF 62

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
            RI +P   + NT++K +  N  F   F +F +++     PD YT P V+KAC+   ++R
Sbjct: 63  ERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACA---ALR 119

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           +                                                 S   M+ GY+
Sbjct: 120 D------------------------------------------------CSLGKMVHGYS 131

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
           S     +   VFD+         N+L+      GD+ +AR +FDEMP  + VS++ MI G
Sbjct: 132 S-----KLGLVFDIFVG------NSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISG 180

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAKVGD+ SAR  F+ AP++D   W A+ISGY QN    E + +F  +   +V PDE I 
Sbjct: 181 YAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIF 240

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           VS++SAC+ +G LD+  W+  YL+R  + LS   +  +L+DM AKCGN++ A  LF++MP
Sbjct: 241 VSILSACAHLGALDIGIWIHRYLNRKTVSLS-IRLSTSLLDMYAKCGNLELAKRLFDSMP 299

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            RD+V + +MI GL++HG G  A+ +F  M   G+ PD++ F  V TACS+ G+  +G +
Sbjct: 300 ERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQ 359

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL-----NSMPVEPHASAWGALLG 508
             + M ++Y I P  EHY C+VDLL R G    A  ++      S        AW A L 
Sbjct: 360 LLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLS 419

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           AC  +   +L E  A RL  LE  ++G YVLLSN+YA + +  D   VR+ M+ +G+ K 
Sbjct: 420 ACCNHGQAQLAERAAKRLLRLE-NHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKA 478

Query: 569 PGCSSL 574
           PGCSS+
Sbjct: 479 PGCSSV 484


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/583 (31%), Positives = 308/583 (52%), Gaps = 68/583 (11%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN---PNTFLWNTLLKGYSQ 113
           H  I   G E +  +    +++ +S    L  ++ +F+ I      +   WN+++  + +
Sbjct: 185 HGLICCNGFESNVFICNALVAM-YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK 243

Query: 114 NSRF---IEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +S     +++F+    ++ E+      D  +   ++ AC  + +V +   +H   IR G 
Sbjct: 244 SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGT 303

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             DVFVG +LID Y K   +  A KVF+ M  ++VVSW AM+ GY+  G+   A  +F  
Sbjct: 304 FPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKN 363

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQLFDEM------------------------ 259
           M + +     V+W A+I G  + G    A  LF +M                        
Sbjct: 364 MRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGA 423

Query: 260 -------------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP--D 292
                                     + +++ Y  +ID Y+K     +ARS+F+  P  +
Sbjct: 424 FSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 483

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSN 350
           R+VV W+ +I G+AQ G  ++A+K+F +M S+   V P+ + +  ++ AC+ +  + +  
Sbjct: 484 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 543

Query: 351 WVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
            + +Y+ R H   S A+ +A  L+DM +KCG++D A  +F++M  +  +S+ SM+ G  +
Sbjct: 544 QIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 603

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G +A+ +FD+M   G  PD++ F +VL ACSH G+V+ G  +F++M   Y + P  E
Sbjct: 604 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 663

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYAC +DLL R+G L  A+  +  MP+EP A  W ALL AC+++S++EL E   N+L E+
Sbjct: 664 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 723

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +N GSY L+SNIYATA RW DV  +R  MK+ G++K PGCS
Sbjct: 724 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 766



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 250/559 (44%), Gaps = 102/559 (18%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH----------FISLCHSLATPL----- 86
           +L+K+CK    +HQ+H  II  GL    + +            FIS   SL T +     
Sbjct: 49  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP-RSLGTGVVASYL 107

Query: 87  -----SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
                 Y+  V  R+       WN L++ + +  R      +  R++R    PD +T P 
Sbjct: 108 ACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 167

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER- 200
           V+KAC  + S R G+A H  +   G + +VF+  +L+ +Y +   +  A  +FDE+ +R 
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 227

Query: 201 --NVVSWTAMIVGYASVGDLVEAKTVFDLMP---------ERSNV--------------- 234
             +V+SW +++  +    +   A  +F  M          ERS++               
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 287

Query: 235 ---------------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                  NALI    K G + +A ++F+ M  ++VVS+  M+ G
Sbjct: 288 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 347

Query: 274 YAKVGDMTSARSLFEAAPDR----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           Y++ G+  +A  LF+         DVV W+A+I+GY+Q G   EA+ +F  M      P+
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAH--------VIAALVDMNAKCG 380
              ++S++SAC+ +G       + +Y L    + L            V  AL+DM +KC 
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 381 NMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVAFT 436
           +   A  +F+ +P   R+VV++  MI G + +G    A+ LF  M+SE  G+ P+    +
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 527

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--------CMVDLLGRTGHLKSAY 488
            +L AC+H+  +  G       + ++A V     Y         C++D+  + G + +A 
Sbjct: 528 CILMACAHLAAIRIG-------KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTAR 580

Query: 489 ELLNSMPVEPHASAWGALL 507
            + +SM  +  A +W +++
Sbjct: 581 HVFDSMS-QKSAISWTSMM 598


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 302/542 (55%), Gaps = 13/542 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           ++K C+      ++H  + K G + D  + A  I + +S    +  + ++F+ +   +  
Sbjct: 181 VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHM-YSRFGFVGIARSLFDDMPFRDMG 239

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++ G  QN    +   +   +  E    D  T   ++  C+ +  +   T IH  V
Sbjct: 240 SWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV 299

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I+ G++ ++FV  +LI++Y K   +  A+KVF +M  R+VVSW ++I  Y    D V A+
Sbjct: 300 IKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTAR 359

Query: 223 TVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN-----VVSYTTMIDG 273
             F  M     E   ++  +L     +  D +++R +   +  R      VV    ++D 
Sbjct: 360 GFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDM 419

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFI 332
           YAK+G + SA  +F   P +DVV+W+ LISGY QNG   EA++++  M   + ++ ++  
Sbjct: 420 YAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGT 479

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
            VS+++A + VG L     +  +L ++++ L    V   L+D+  KCG +  A  LF  +
Sbjct: 480 WVSILAAYAHVGALQQGMRIHGHLIKTNLHLD-VFVGTCLIDLYGKCGRLVDAMCLFYQV 538

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P    V + ++I    IHGHG +A+ LF  M  EG+ PD V F  +L+ACSH GLV++G 
Sbjct: 539 PRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGK 598

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
            FF  MQ  Y I PS +HY CMVDLLGR G L+ AY+ +  MP+ P AS WGALLGAC++
Sbjct: 599 WFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRI 657

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +IELG+  ++RLFE++ +N G YVLLSNIYA   +W  V  VRS  +ERGL+K PG S
Sbjct: 658 HGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 717

Query: 573 SL 574
           S+
Sbjct: 718 SI 719



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 186/396 (46%), Gaps = 33/396 (8%)

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           R+ A  ++  F  +  +C+  L  +    +HA ++  G  +  F+   L++LY    ++S
Sbjct: 69  RQPAKNEEIDFNSLFDSCTKTLLAKR---LHALLVVSGKIQSNFISIRLVNLYASLGDVS 125

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD--LMPERSNVSWNALIGGLVKI 246
            +R  FD++  ++V +W +MI  Y   G   EA   F   L+  +    +      L   
Sbjct: 126 LSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC 185

Query: 247 GDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
             L   R++    F    + +V    ++I  Y++ G +  ARSLF+  P RD+ +W+A+I
Sbjct: 186 QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMI 245

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SG  QNG   +A+ +  +M  + +  D   + S++  C+Q+G++  +  +  Y+ +  ++
Sbjct: 246 SGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLE 305

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
                V  AL++M AK GN+  A ++F+ M  RDVVS+ S+I     +     A   F +
Sbjct: 306 F-ELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFK 364

Query: 423 MLSEGLTPDEVAFTIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
           M   GL PD +    + +  +           H  ++  GW   EA+    A+       
Sbjct: 365 MQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGW-LMEAVVIGNAV------- 416

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
              +D+  + G + SA+++ N +PV+   S W  L+
Sbjct: 417 ---MDMYAKLGVIDSAHKVFNLIPVKDVVS-WNTLI 448



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 147/335 (43%), Gaps = 45/335 (13%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S  ++  + +   +   VH  I+++G   +  ++ + +   ++    +  +  
Sbjct: 372 PDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHK 431

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE--EAVPDKYTFPLVIKACSHV 149
           VFN I   +   WNTL+ GY+QN    E   ++ R++ E  E   ++ T+  ++ A +HV
Sbjct: 432 VFNLIPVKDVVSWNTLISGYTQNGLASEAIEVY-RMMEECREIKLNQGTWVSILAAYAHV 490

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++++G  IH  +I+  +  DVFVGT LIDLYGK     C R                  
Sbjct: 491 GALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGK-----CGR------------------ 527

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----V 265
                   LV+A  +F  +P  S+V WNA+I      G    A +LF EM +  V    V
Sbjct: 528 --------LVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHV 579

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA----WSALISGYAQNGQPDEAVKIFSDM 321
           ++ +++   +  G +   +  F    +  +      +  ++    + G  + A     DM
Sbjct: 580 TFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDM 639

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
               + PD  I  +L+ AC   GN++L  +    L
Sbjct: 640 ---PLHPDASIWGALLGACRIHGNIELGKFASDRL 671


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/540 (35%), Positives = 294/540 (54%), Gaps = 20/540 (3%)

Query: 46  KCKLQTHLHQVHSHIIKKGLEQDHSLVAHF--ISLCHSLATPLSYSTAVFNRIVNP--NT 101
           K K   H  Q+HS ++      +H+ +A+   + L ++    + ++  +FN   +P  N 
Sbjct: 109 KLKSLKHATQIHSQLVTT---NNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNV 165

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
             W TL+   S++++  +  T F R+      P+ +TF  ++ AC+H   + EG  IHA 
Sbjct: 166 VTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHAL 225

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           + +     D FV T+L+D+Y K   +  A  VFDEMP RN+VSW +MIVG+        A
Sbjct: 226 IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA 285

Query: 222 KTVF----DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDG 273
             VF     L P++  VS ++++     + +L   +Q+   + +R +V       +++D 
Sbjct: 286 IGVFREVLSLGPDQ--VSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDM 343

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K G    A  LF    DRDVV W+ +I G  +    ++A   F  M  + V+PDE   
Sbjct: 344 YCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASY 403

Query: 334 VSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
            SL  A + +  L     + S+ L   H+  SR  + ++LV M  KCG+M  A ++F   
Sbjct: 404 SSLFHASASIAALTQGTMIHSHVLKTGHVKNSR--ISSSLVTMYGKCGSMLDAYQVFRET 461

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
              +VV + +MI     HG   +A+ LF+ ML+EG+ P+ + F  VL+ACSH G ++DG+
Sbjct: 462 KEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGF 521

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           ++F +M NV+ I P  EHYACMVDLLGR G L+ A   + SMP EP +  WGALLGAC  
Sbjct: 522 KYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGK 581

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++++E+G  VA RLF+LEP N G+Y+LLSNIY       +   VR  M   G+RK  GCS
Sbjct: 582 HANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCS 641


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/583 (31%), Positives = 308/583 (52%), Gaps = 68/583 (11%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN---PNTFLWNTLLKGYSQ 113
           H  I   G E +  +    +++ +S    L  ++ +F+ I      +   WN+++  + +
Sbjct: 178 HGLICCNGFESNVFICNALVAM-YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK 236

Query: 114 NSRF---IEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +S     +++F+    ++ E+      D  +   ++ AC  + +V +   +H   IR G 
Sbjct: 237 SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGT 296

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             DVFVG +LID Y K   +  A KVF+ M  ++VVSW AM+ GY+  G+   A  +F  
Sbjct: 297 FPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKN 356

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQLFDEM------------------------ 259
           M + +     V+W A+I G  + G    A  LF +M                        
Sbjct: 357 MRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGA 416

Query: 260 -------------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP--D 292
                                     + +++ Y  +ID Y+K     +ARS+F+  P  +
Sbjct: 417 FSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 476

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSN 350
           R+VV W+ +I G+AQ G  ++A+K+F +M S+   V P+ + +  ++ AC+ +  + +  
Sbjct: 477 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 536

Query: 351 WVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
            + +Y+ R H   S A+ +A  L+DM +KCG++D A  +F++M  +  +S+ SM+ G  +
Sbjct: 537 QIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 596

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G +A+ +FD+M   G  PD++ F +VL ACSH G+V+ G  +F++M   Y + P  E
Sbjct: 597 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 656

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYAC +DLL R+G L  A+  +  MP+EP A  W ALL AC+++S++EL E   N+L E+
Sbjct: 657 HYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 716

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +N GSY L+SNIYATA RW DV  +R  MK+ G++K PGCS
Sbjct: 717 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 759



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 250/559 (44%), Gaps = 102/559 (18%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH----------FISLCHSLATPL----- 86
           +L+K+CK    +HQ+H  II  GL    + +            FIS   SL T +     
Sbjct: 42  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP-RSLGTGVVASYL 100

Query: 87  -----SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
                 Y+  V  R+       WN L++ + +  R      +  R++R    PD +T P 
Sbjct: 101 ACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPH 160

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER- 200
           V+KAC  + S R G+A H  +   G + +VF+  +L+ +Y +   +  A  +FDE+ +R 
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 220

Query: 201 --NVVSWTAMIVGYASVGDLVEAKTVFDLMP---------ERSNV--------------- 234
             +V+SW +++  +    +   A  +F  M          ERS++               
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 280

Query: 235 ---------------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                  NALI    K G + +A ++F+ M  ++VVS+  M+ G
Sbjct: 281 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 340

Query: 274 YAKVGDMTSARSLFEAAPDR----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           Y++ G+  +A  LF+         DVV W+A+I+GY+Q G   EA+ +F  M      P+
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAH--------VIAALVDMNAKCG 380
              ++S++SAC+ +G       + +Y L    + L            V  AL+DM +KC 
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 381 NMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVAFT 436
           +   A  +F+ +P   R+VV++  MI G + +G    A+ LF  M+SE  G+ P+    +
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 520

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--------CMVDLLGRTGHLKSAY 488
            +L AC+H+  +  G       + ++A V     Y         C++D+  + G + +A 
Sbjct: 521 CILMACAHLAAIRIG-------KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTAR 573

Query: 489 ELLNSMPVEPHASAWGALL 507
            + +SM  +  A +W +++
Sbjct: 574 HVFDSMS-QKSAISWTSMM 591


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 302/546 (55%), Gaps = 27/546 (4%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L L+KKC     L Q+ + ++   +E+ + L+   + L        +YS+ +F+    PN
Sbjct: 41  LFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVEL-----GDFNYSSFLFSVTEEPN 95

Query: 101 TFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            + +N +++G +      E   +++ R+      PDK+T+  V  AC+ +  +  G ++H
Sbjct: 96  HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           +++ + G++ DV +  SLI +Y K  ++  ARK+FDE+ ER+ VSW +MI GY+  G   
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215

Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT-----M 270
           +A  +F  M E        +  +++G    +GDLR+ R L +EM     +  +T     +
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR-LLEEMAITKKIGLSTFLGSKL 274

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I  Y K GD+ SAR +F     +D VAW+A+I+ Y+QNG+  EA K+F +M    V PD 
Sbjct: 275 ISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDA 334

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH---VIAALVDMNAKCGNMDRAAE 387
             L +++SAC  VG L+L   ++++ S    +LS  H   V   LVDM  KCG ++ A  
Sbjct: 335 GTLSTVLSACGSVGALELGKQIETHAS----ELSLQHNIYVATGLVDMYGKCGRVEEALR 390

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +FE MP ++  ++ +MI   +  GH ++A+ LFDRM    + P ++ F  VL+AC H GL
Sbjct: 391 VFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGL 447

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V  G R+F  M +++ +VP  EHY  ++DLL R G L  A+E +   P +P      A+L
Sbjct: 448 VHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAIL 507

Query: 508 GACKLYSDIELGELVANRLFEL-EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           GAC    D+ + E     L E+ E +NAG+YV+ SN+ A    W +   +R+ M++RG+ 
Sbjct: 508 GACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVV 567

Query: 567 KIPGCS 572
           K PGCS
Sbjct: 568 KTPGCS 573



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 133/308 (43%), Gaps = 29/308 (9%)

Query: 3   KIDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIK 62
           K++E       ++  SML  CS    +   +   LL  + + KK  L T L         
Sbjct: 223 KMEEEGFEPDERTLVSMLGACSHLGDL---RTGRLLEEMAITKKIGLSTFLG-------- 271

Query: 63  KGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT 122
                     +  IS+ +     L  +  VFN+++  +   W  ++  YSQN +  E F 
Sbjct: 272 ----------SKLISM-YGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 320

Query: 123 IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
           +F  + +    PD  T   V+ AC  V ++  G  I        +  +++V T L+D+YG
Sbjct: 321 LFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYG 380

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-ERSNVSWNALIG 241
           K   +  A +VF+ MP +N  +W AMI  YA  G   EA  +FD M    S++++  ++ 
Sbjct: 381 KCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLS 440

Query: 242 GLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DV 295
             V  G +    + F EM         +  YT +ID  ++ G +  A    E  P + D 
Sbjct: 441 ACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDE 500

Query: 296 VAWSALIS 303
           +  +A++ 
Sbjct: 501 IMLAAILG 508


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/526 (34%), Positives = 289/526 (54%), Gaps = 22/526 (4%)

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
           G+  D +++AHF     S   P     A+     + + F  N L+   + +      F  
Sbjct: 33  GIAVDAAVLAHFARHLASARAPADAVHALLRLRASAHPF--NALISHLTLSGEPSSAFRT 90

Query: 124 FVRLIR----EEAVPDKYTFPLVIKACSHVLSVR------EGTAIHAAVIRWGVDEDVFV 173
           F  L+     E   PD YT P  +KAC+ + +        EG  +HA   + G    + V
Sbjct: 91  FAALLAAGRGEPRRPDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPV 150

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV---FDLMPE 230
             +L+ LYG   E   AR+VFDEM  R+VVSWTA++  +   G   EA  +    D++P 
Sbjct: 151 RNALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMDVVPN 210

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSL 286
              ++   +  G  ++G  R+ + +      R     ++    ++D Y K   +  AR +
Sbjct: 211 EGTLACVLVACG--RLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRV 268

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+    RDV++W+ +ISG  Q   P +A+++F++M    V+PD+ +L +++SAC+ +G L
Sbjct: 269 FDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGAL 328

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +   WV  Y+ R  ++    HV  +LVDM AKCG ++ +  +F  MP +++ S+ ++I G
Sbjct: 329 ESGRWVHEYIERKGIEWD-VHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALING 387

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            ++HGHGR+A+  FDRM++ GL P+EV+F IVL AC H GLV++G + FE+M+N Y + P
Sbjct: 388 FALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSP 447

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHY  +VDLLGR G +  AY +  +MP+ P    WGALL AC+ +  ++  + +   +
Sbjct: 448 WEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHV 507

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ELE   +G Y LLSNIYA   RW DV  VR  M E+GL+K PG S
Sbjct: 508 HELESSESGVYALLSNIYAVNHRWADVKRVRGLMSEKGLQKEPGSS 553


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/526 (34%), Positives = 298/526 (56%), Gaps = 11/526 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H++++++G E D S+V   I   ++    +     +F+++V  N   W T++ GY QN
Sbjct: 159 QIHAYVLRRGTEMDVSVVNVLIDF-YTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 217

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           S   E   +F  + R    PD +    V+ +C  + ++ +G  +HA  I+  ++ + FV 
Sbjct: 218 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVK 277

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
             LID+Y K   +  A+KVFD M E+NV+S+ AMI GY+S   L EA  +F  M  R   
Sbjct: 278 NGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFP 337

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSL 286
            S +++ +L+G    +  L  ++Q+   + +  V     + + +ID Y+K   +  AR +
Sbjct: 338 PSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHV 397

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE   ++D+V W+A+  GY Q+ + +EA+K++S +     +P+EF   +L++A S + +L
Sbjct: 398 FEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASL 457

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                  + L +  +D     V  ALVDM AKCG+++ A ++F +   RDVV + SMI  
Sbjct: 458 RHGQQFHNQLVKMGLDFC-PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 516

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + HG   +A+ +F  M+ EG+ P+ V F  VL+ACSH G VEDG   F +M   + I P
Sbjct: 517 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPG-FGIKP 575

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHYAC+V LLGR+G L  A E +  MP+EP A  W +LL AC++  ++ELG+  A   
Sbjct: 576 GTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMA 635

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              +P+++GSY+LLSNI+A+   W DV  VR +M    + K PG S
Sbjct: 636 ISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRS 681



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 216/445 (48%), Gaps = 43/445 (9%)

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +GYS+     E   +FV L R+    P+++    VI+AC+ +  V +G  +H  V+R G 
Sbjct: 14  EGYSE-----EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGF 68

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-- 225
           D+DV+VGTSLID Y K  +I  AR VFD++ E+  V+WT +I GY   G    +  +F  
Sbjct: 69  DQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQ 128

Query: 226 ----DLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKV 277
               +++P+R  VS  +++     +  L   +Q+         E +V     +ID Y K 
Sbjct: 129 MRETNVVPDRYVVS--SVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKC 186

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
             + + R LF+    +++++W+ +ISGY QN    EA+K+F +M     +PD F   S++
Sbjct: 187 NRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVL 246

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           ++C  +  L+    V +Y  +++++ S   V   L+DM AK   +  A ++F+ M  ++V
Sbjct: 247 TSCGSLEALEQGRQVHAYTIKANLE-SNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNV 305

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           +SY +MI+G S      +A+ LF  M      P  + F  +L   + +  +       E 
Sbjct: 306 ISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFAL-------EL 358

Query: 458 MQNVYAIV----PSPEHYA--CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL---- 507
            + ++ ++     S + +A   ++D+  +  ++K A  +   M  E     W A+     
Sbjct: 359 SKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYT 417

Query: 508 ------GACKLYSDIELGELVANRL 526
                  A KLYS ++      N  
Sbjct: 418 QHLENEEALKLYSTLQFSRQKPNEF 442


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 300/529 (56%), Gaps = 37/529 (6%)

Query: 75  FIS-LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
           FIS LC      + Y+  VF  +   +  LW T++ GY +     E   +F R    +A 
Sbjct: 7   FISRLCRE--GEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRW---DAK 61

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAA-----VIRWGVDEDVFVGTSL----IDLYGKR 184
            +  T+  ++        V+E   +        V+ W    D +    L    +DL+ + 
Sbjct: 62  KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM 121

Query: 185 KE-------------ISCAR-----KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
            E             + C R     ++FD+M +R+VVSWT M+ G A  G + +A+ +FD
Sbjct: 122 PERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFD 181

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            MP R+ VSWNA+I G  +   L  A QLF  MPER++ S+ TMI G+ + G++  A  L
Sbjct: 182 QMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKL 241

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGN 345
           F    +++V+ W+A+++GY Q+G  +EA+++F  M + N ++P+    V+++ ACS +  
Sbjct: 242 FGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAG 301

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET--MPNRDVVSYCSM 403
           L     +   +S++    S   V++AL++M +KCG +  A ++F+   +  RD++S+  M
Sbjct: 302 LTEGQQIHQMISKTVFQDSTC-VVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGM 360

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I   + HG+G++A++LF+ M   G+  ++V F  +LTACSH GLVE+G+++F+ +    +
Sbjct: 361 IAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRS 420

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I    +HYAC+VDL GR G LK A  ++  +  E   + WGALL  C ++ + ++G+LVA
Sbjct: 421 IQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVA 480

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++ ++EPQNAG+Y LLSN+YA+  +W +   VR +MK+ GL+K PGCS
Sbjct: 481 EKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCS 529



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 60/324 (18%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA-APDRDV 295
           N  I  L + G++  AR++F+EMPER++  +TTMI GY K G +  AR LF+     ++V
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V W+A+++GY +  Q  EA ++F +M  +NV                   +  +  VD Y
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNV-------------------VSWNTMVDGY 105

Query: 356 ----LSRSHMDLSRA----------HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
               L++  +DL R            +I ALV    +CG ++ A  LF+ M +RDVVS+ 
Sbjct: 106 ARNGLTQQALDLFRRMPERNVVSWNTIITALV----QCGRIEDAQRLFDQMKDRDVVSWT 161

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           +M+ GL+ +G    A +LFD+M    +    V++  ++T  +    +++  + F+ M   
Sbjct: 162 TMVAGLAKNGRVEDARALFDQMPVRNV----VSWNAMITGYAQNRRLDEALQLFQRMPE- 216

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
              +PS   +  M+    + G L  A +L   M  E +   W A++     Y    L E 
Sbjct: 217 -RDMPS---WNTMITGFIQNGELNRAEKLFGEMQ-EKNVITWTAMMTG---YVQHGLSE- 267

Query: 522 VANRLF-------ELEPQNAGSYV 538
            A R+F       EL+P N G++V
Sbjct: 268 EALRVFIKMLATNELKP-NTGTFV 290


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 296/529 (55%), Gaps = 14/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+HS IIK   E +  +    + + ++    L  +   F  I N +   WN ++ GY Q 
Sbjct: 471 QLHSFIIKHNFEYNLFVENTLVDM-YAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQE 529

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F +F R+I +   PD+ +   ++  C+++ ++ +G  +H  +++ G+   ++ G
Sbjct: 530 EDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAG 589

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           +SLID+Y K   I  AR VF  MP R+VVS  A+I GYA   DLVEA  +F  M      
Sbjct: 590 SSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQ-NDLVEAIDLFQEMQNEGLN 648

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARS 285
            S +++ +L+        L   RQ+   + +R ++        +++  Y      T A  
Sbjct: 649 PSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADI 708

Query: 286 LF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
           LF E    +  + W+A+ISG+ QNG  +EA++++ +M   N +PD+    S++ ACS + 
Sbjct: 709 LFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILA 768

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSM 403
           +L     + S +    +D S     +A+VDM AKCG+M  + ++FE M ++ DV+S+ SM
Sbjct: 769 SLGDGRMIHSLIFHVGLD-SDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSM 827

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + +G+   A+ +FD M    + PD+V F  VLTACSH G V +G   F+ M + Y 
Sbjct: 828 IVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYK 887

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           IVP  +H ACM+DLLGR G LK A E ++ +  EP+A  W  LLGAC+++ D   G   A
Sbjct: 888 IVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAA 947

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L ELEP+N+  YVLLSNIYA +  W +V  VR  M+E+GLRK+PGCS
Sbjct: 948 EKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCS 996



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 203/399 (50%), Gaps = 15/399 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +V   + K GL  D       I+ C  L   L  +  +F ++ N N   WN ++ G+ + 
Sbjct: 269 KVFEDMQKLGLVPDQVAFVTVITACVGLGR-LDDACDLFVQMPNTNVVAWNVMISGHVKR 327

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              IE    F  + +      + T   V+ A + + ++  G  +HA  I+ G++ +V+VG
Sbjct: 328 GCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVG 387

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
           +SLI++Y K +++  A+KVFD + ERN+V W AM+ GYA  G   +   +F  M      
Sbjct: 388 SSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFW 447

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           P+    ++ +++     +  L   RQL         E N+    T++D YAK G +  AR
Sbjct: 448 PDE--FTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEAR 505

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
             FE   +RD V+W+A+I GY Q    DEA  +F  M    + PDE  L S++S C+ + 
Sbjct: 506 QQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQ 565

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            L+    V  +L +S +  +  +  ++L+DM  KCG ++ A  +F  MP+R VVS  ++I
Sbjct: 566 ALEQGEQVHCFLVKSGLQ-TCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAII 624

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            G +      +A+ LF  M +EGL P E+ F  +L AC+
Sbjct: 625 AGYA-QNDLVEAIDLFQEMQNEGLNPSEITFASLLDACT 662



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 145/562 (25%), Positives = 259/562 (46%), Gaps = 100/562 (17%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+  +K G      L +  + L ++    + ++   FN++   +   WN++L  YS+  
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDL-YAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQG 161

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +V   F  L      P+++T+ +V+ +C+ ++ +  G  +H  VI+ G + + F   
Sbjct: 162 SLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEG 221

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD------LMP 229
           SLID+Y K   +  ARK+FD + + + VSWTAMI GY  VG   EA  VF+      L+P
Sbjct: 222 SLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVP 281

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK------------- 276
           ++  V++  +I   V +G L  A  LF +MP  NVV++  MI G+ K             
Sbjct: 282 DQ--VAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKN 339

Query: 277 ------------VGDMTSARSLFEA--------------APDRDVVAWSALISGYAQNGQ 310
                       +G + SA +  EA                + +V   S+LI+ YA+  +
Sbjct: 340 MWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEK 399

Query: 311 PDEAVKIFSDMCSKNV-------------------------------QPDEFILVSLMSA 339
            + A K+F  +  +N+                                PDEF   S++SA
Sbjct: 400 MEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSA 459

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +  L++   + S++ + + + +   V   LVDM AKCG ++ A + FE + NRD VS
Sbjct: 460 CACLECLEMGRQLHSFIIKHNFEYN-LFVENTLVDMYAKCGALEEARQQFEFIRNRDNVS 518

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + ++I G        +A ++F RM+ +G+ PDEV+   +L+ C+++  +E G       +
Sbjct: 519 WNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQG-------E 571

Query: 460 NVYAIVPSPEHYAC------MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            V+  +       C      ++D+  + G +++A  + + MP     S    + G    Y
Sbjct: 572 QVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAG----Y 627

Query: 514 SDIELGELVANRLFELEPQNAG 535
           +  +L E +   LF+ E QN G
Sbjct: 628 AQNDLVEAI--DLFQ-EMQNEG 646



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 190/421 (45%), Gaps = 61/421 (14%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           ++T+ +  +Q S   ++FT  +++  ++    K   P          + R    IHA  +
Sbjct: 50  FSTIQRQVNQTSEH-KIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTL 108

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           ++G      +G++++DLY K   +  A K F+++ +R++++W +++  Y+  G L +   
Sbjct: 109 KFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIW 168

Query: 224 VFDLMPERSNVSWNALIGGLV-----KIGDLRSARQL----FDEMPERNVVSYTTMIDGY 274
            F  + +   VS N     +V     ++ D+   +Q+         E N     ++ID Y
Sbjct: 169 CFGSL-QNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMY 227

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           +K G +  AR +F+A  D D V+W+A+I+GY Q G P+EA+K+F DM    + PD+   V
Sbjct: 228 SKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFV 287

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           ++++AC  +G L                                    D A +LF  MPN
Sbjct: 288 TVITACVGLGRL------------------------------------DDACDLFVQMPN 311

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----HVGLVE 449
            +VV++  MI G    G   +A+  F  M   G+         VL+A +     + GL+ 
Sbjct: 312 TNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLV 371

Query: 450 DGWRFFEAMQ-NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
                 + +  NVY         + ++++  +   +++A ++ +++  E +   W A+LG
Sbjct: 372 HAQAIKQGLNSNVYV-------GSSLINMYAKCEKMEAAKKVFDALD-ERNLVLWNAMLG 423

Query: 509 A 509
            
Sbjct: 424 G 424


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 302/546 (55%), Gaps = 27/546 (4%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L L+KKC     L Q+ + ++   +E+ + L+   + L        +YS+ +F+    PN
Sbjct: 37  LFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVEL-----GDFNYSSFLFSVTEEPN 91

Query: 101 TFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            + +N +++G +      E   +++ R+      PDK+T+  V  AC+ +  +  G ++H
Sbjct: 92  HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 151

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           +++ + G++ DV +  SLI +Y K  ++  ARK+FDE+ ER+ VSW +MI GY+  G   
Sbjct: 152 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 211

Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT-----M 270
           +A  +F  M E        +  +++G    +GDLR+ R L +EM     +  +T     +
Sbjct: 212 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR-LLEEMAITKKIGLSTFLGSKL 270

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           I  Y K GD+ SAR +F     +D VAW+A+I+ Y+QNG+  EA K+F +M    V PD 
Sbjct: 271 ISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDA 330

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH---VIAALVDMNAKCGNMDRAAE 387
             L +++SAC  VG L+L   ++++ S    +LS  H   V   LVDM  KCG ++ A  
Sbjct: 331 GTLSTVLSACGSVGALELGKQIETHAS----ELSLQHNIYVATGLVDMYGKCGRVEEALR 386

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +FE MP ++  ++ +MI   +  GH ++A+ LFDRM    + P ++ F  VL+AC H GL
Sbjct: 387 VFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGL 443

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V  G R+F  M +++ +VP  EHY  ++DLL R G L  A+E +   P +P      A+L
Sbjct: 444 VHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAIL 503

Query: 508 GACKLYSDIELGELVANRLFEL-EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           GAC    D+ + E     L E+ E +NAG+YV+ SN+ A    W +   +R+ M++RG+ 
Sbjct: 504 GACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVV 563

Query: 567 KIPGCS 572
           K PGCS
Sbjct: 564 KTPGCS 569



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 133/308 (43%), Gaps = 29/308 (9%)

Query: 3   KIDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIK 62
           K++E       ++  SML  CS    +   +   LL  + + KK  L T L         
Sbjct: 219 KMEEEGFEPDERTLVSMLGACSHLGDL---RTGRLLEEMAITKKIGLSTFLG-------- 267

Query: 63  KGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT 122
                     +  IS+ +     L  +  VFN+++  +   W  ++  YSQN +  E F 
Sbjct: 268 ----------SKLISM-YGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 316

Query: 123 IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
           +F  + +    PD  T   V+ AC  V ++  G  I        +  +++V T L+D+YG
Sbjct: 317 LFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYG 376

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-ERSNVSWNALIG 241
           K   +  A +VF+ MP +N  +W AMI  YA  G   EA  +FD M    S++++  ++ 
Sbjct: 377 KCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLS 436

Query: 242 GLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DV 295
             V  G +    + F EM         +  YT +ID  ++ G +  A    E  P + D 
Sbjct: 437 ACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDE 496

Query: 296 VAWSALIS 303
           +  +A++ 
Sbjct: 497 IMLAAILG 504


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 171/474 (36%), Positives = 275/474 (58%), Gaps = 9/474 (1%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   + +LL+GY ++    +   +F ++     V    T+ +++        V E   +
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHV----TYTVLLGGFLDAGRVNEARKL 165

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
              +     D+DV   T+++  Y +   I+ AR +FDEMP+RNVVSWTAMI GYA  G +
Sbjct: 166 FDEM----PDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKV 221

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           + A+ +F++MP+R+ VSW A++ G ++ G +  A  LF+ MP+  V +   M+ G+ + G
Sbjct: 222 ILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHG 281

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + +A+++FE    RD   WSA+I  Y QN    EA+  F +M  + ++P+    +S+++
Sbjct: 282 MVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILT 341

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            C+ +   D    + + + R   D +    ++AL+ M  KCGN+D+A  +F     +DVV
Sbjct: 342 VCAALATADYGRELHAAMLRCSFD-TDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVV 400

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + SMI G + HG G +A+ +FD +    + PD + +  VLTACS+ G V++G   F +M
Sbjct: 401 MWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSM 460

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
               +I     HY+CMVDLLGR G +  A +L+N+MPVEP A  WGAL+GAC+++ + E+
Sbjct: 461 GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEI 520

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E+ A +L ELEP +AG YVLLS+IY +  RW D   +R  +  R L K PGCS
Sbjct: 521 AEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCS 574



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 165/371 (44%), Gaps = 76/371 (20%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL--- 243
           I  AR  FD MP R   S+ A+I GY        A  +F  MP R   S+NALI GL   
Sbjct: 33  IEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLR 92

Query: 244 ------------------------------VKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                         V+ G L  A +LF +MPERN V+YT ++ G
Sbjct: 93  RHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGG 152

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           +   G +  AR LF+  PD+DVVA +A++SGY Q G+  EA  +F +M  +NV       
Sbjct: 153 FLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVS----W 208

Query: 334 VSLMSACSQVGNLDLS-------------NWVD---SYLSRSHM----DLSRA---HVIA 370
            +++S  +Q G + L+             +W      Y+   H+    DL  A   H +A
Sbjct: 209 TAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVA 268

Query: 371 ALVDMN---AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           A   M     + G +D A  +FE M  RD  ++ +MIK    +    +A+S F  ML  G
Sbjct: 269 ACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRG 328

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAM------QNVYAIVPSPEHYACMVDLLGRT 481
           + P+  +F  +LT C+ +   + G     AM       +V+A+       + ++ +  + 
Sbjct: 329 IRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAV-------SALITMYIKC 381

Query: 482 GHLKSAYELLN 492
           G+L  A  + N
Sbjct: 382 GNLDKAKRVFN 392



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 161/340 (47%), Gaps = 23/340 (6%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  ++ + A+F+ +   N   W  ++ GY+QN + I    +F      E +PD+      
Sbjct: 187 AGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLF------EVMPDRNEVSWT 240

Query: 143 IKACSHVLS--VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
                ++ +  V +   +  A+     D  V    +++  +G+   +  A+ +F+ M  R
Sbjct: 241 AMLVGYIQAGHVEDAEDLFNAM----PDHPVAACNAMMVGFGQHGMVDAAKAMFERMCAR 296

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-NVSWNALIGGLVKIGDLRSA---RQLF 256
           +  +W+AMI  Y     L+EA + F  M  R    ++ + I  L     L +A   R+L 
Sbjct: 297 DDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELH 356

Query: 257 DEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
             M     + +V + + +I  Y K G++  A+ +F     +DVV W+++I+GYAQ+G  +
Sbjct: 357 AAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGE 416

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAA 371
           EA+ IF D+    + PD    + +++ACS  G +     + +S    S + L  AH  + 
Sbjct: 417 EALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHY-SC 475

Query: 372 LVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIH 410
           +VD+  + G +D A +L   MP   D + + +++    +H
Sbjct: 476 MVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMH 515



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 56/295 (18%)

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           VV+  A I      G++  A+  FD MP R+  S+NALI G  +     +A  LF  MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 262 RN---------------------------------VVSYTTMIDGYAKVGDMTSARSLFE 288
           R+                                 VVS+T+++ GY + G +  A  LF 
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
             P+R+ V ++ L+ G+   G+ +EA K+F +M  K+V        +++S   Q G +  
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDV----VARTAMLSGYCQAGRIT- 191

Query: 349 SNWVDSYLSRSHMD-LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
                   +R+  D + + +V++  A++   A+ G +  A +LFE MP+R+ VS+ +M+ 
Sbjct: 192 -------EARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLV 244

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWRFFEAM 458
           G    GH   A  LF+ M      PD    A   ++      G+V+     FE M
Sbjct: 245 GYIQAGHVEDAEDLFNAM------PDHPVAACNAMMVGFGQHGMVDAAKAMFERM 293



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 32/339 (9%)

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           V+ NA I  LV+ G++  AR  FD MP R   SY  +I GY +     +A  LF   P R
Sbjct: 18  VAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSR 77

Query: 294 DVVAWSALISGYA--QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL-DLSN 350
           D+ +++ALI+G +  ++  PD A      + S  + P      SL+    + G L D   
Sbjct: 78  DLGSYNALIAGLSLRRHTLPDAAAA----LASIPLPPSVVSFTSLLRGYVRHGLLADAIR 133

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
                  R+H+  +   ++   +D     G ++ A +LF+ MP++DVV+  +M+ G    
Sbjct: 134 LFHQMPERNHVTYTV--LLGGFLD----AGRVNEARKLFDEMPDKDVVARTAMLSGYCQA 187

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G   +A +LFD M    +    V++T +++  +  G V    + FE M       P    
Sbjct: 188 GRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKLFEVM-------PDRNE 236

Query: 471 YACMVDLLG--RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
            +    L+G  + GH++ A +L N+MP  P A+    ++G  + +  ++     A  +FE
Sbjct: 237 VSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQ-HGMVD----AAKAMFE 291

Query: 529 -LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
            +  ++ G++  +  +Y   +  ++      +M  RG+R
Sbjct: 292 RMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIR 330



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  +  +S LT+        +  ++H+ +++   + D   V+  I++       L  +  
Sbjct: 331 PNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGN-LDKAKR 389

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VFN     +  +WN+++ GY+Q+    E   IF  L      PD  T+  V+ ACS+   
Sbjct: 390 VFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGK 449

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTS----LIDLYGKRKEISCARKVFDEMP-ERNVVSWT 206
           V+EG  I  ++   G++  + +G +    ++DL G+   +  A  + + MP E + + W 
Sbjct: 450 VKEGREIFNSM---GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWG 506

Query: 207 AMI 209
           A++
Sbjct: 507 ALM 509


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 186/575 (32%), Positives = 308/575 (53%), Gaps = 46/575 (8%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++++  C       ++H+ +   GL+   SL    +++     + +  +  +F  +   +
Sbjct: 114 VSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS-VGDAKRMFQSLQTRD 172

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
              WN ++  +SQ+  +     IF + ++ +  P+  T+  VI   S    + EG  IHA
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIF-KEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            ++  G D D+ V T+LI++YGK      AR+VFD+M +R++VSW  MI  Y   GD  E
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE 291

Query: 221 AKTVFDLMP----ERSNVSWNALIG---------------------GL------------ 243
           A  ++  +     +R+  ++ +++G                     GL            
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351

Query: 244 --VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG---DMTSARSLFEAAPDRDVVAW 298
              K G L  AR++F+ M  R+ V+++T+I  YA  G   D   AR +F+    RD ++W
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISW 411

Query: 299 SALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           +A+I+ Y QNG    A+KIF +M  +  ++PD    ++++ AC+ +G L     + + +S
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS 471

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
            S ++ S   V   L++M A+CG+++ A  LF     + VVS+ +M+   S +G   +A+
Sbjct: 472 ESELE-SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEAL 530

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LF  M  EG+ PD+V +T +L  C+H G +E GWR+F  M  ++A+ P+ +H+A MVDL
Sbjct: 531 DLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDL 590

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR+G L  A ELL SMP EP   AW   L AC+++  +ELGE  A R++EL+P +   Y
Sbjct: 591 LGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPY 650

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +SNIYA    W  V  VR KM+ERGL+K+PG S
Sbjct: 651 IAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLS 685



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 237/533 (44%), Gaps = 65/533 (12%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSY 88
           P     L+ L     C        +H  I     E+D  +    IS+   C SL    S 
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
             ++  R    N   WN ++  Y+QN    E   ++ R+  +    D  TF  V+ ACS 
Sbjct: 65  FESMDWR--QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS- 121

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             S+ +G  IH  V   G+D    +  +L+ +Y +   +  A+++F  +  R+  SW A+
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 209 IVGYASVGDLVEAKTVFDLMP---ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----E 261
           I+ ++  GD   A  +F  M    + ++ ++  +I G      L   R++  E+     +
Sbjct: 180 ILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFD 239

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            ++V  T +I+ Y K G    AR +F+    RD+V+W+ +I  Y  NG   EA++++  +
Sbjct: 240 TDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKL 299

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             +  +  +   VS++ ACS V  L     V S++    +D S   V  ALV+M AKCG+
Sbjct: 300 DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD-SEVAVATALVNMYAKCGS 358

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHG---RQAVSLFDRMLSE------------ 426
           ++ A ++F  M NRD V++ ++I   + +G+G   R+A  +FDR+ S             
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY 418

Query: 427 --------------------GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
                               GL PD V F  VL AC+ +G + +       ++ ++A + 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-------VKALHAQIS 471

Query: 467 SPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
             E  +       ++++  R G L+ A E L +   E    +W A++ A   Y
Sbjct: 472 ESELESNVVVTNTLINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMVAAFSQY 523



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 24/191 (12%)

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           QPD    ++++ +CS  G++     +   +  S  +     V  AL+ M  KC ++  A 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERD-TMVGNALISMYGKCDSLVDAR 62

Query: 387 ELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS- 443
            +FE+M    R+VVS+ +MI   + +GH  +A+ L+ RM  +GL  D V F  VL ACS 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 444 -------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
                  H  +   G   F+++ N             +V +  R G +  A  +  S+  
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANA------------LVTMYARFGSVGDAKRMFQSLQT 170

Query: 497 EPHASAWGALL 507
               S W A++
Sbjct: 171 RDETS-WNAVI 180


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 290/530 (54%), Gaps = 20/530 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  I++ G++ +  L    +++     + L  +  VF      +   WN+++ G++Q+ 
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGS-LMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            +   + +F  +  EE  PD  TF  V+  C +  ++  G  IH  +   G+  DV +G 
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN 571

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           +LI++Y +   +  AR VF  +  R+V+SWTAMI G A  G+ ++A  +F  M       
Sbjct: 572 ALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRP 631

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSY-------------TTMIDGYAKVGDMTS 282
             +    ++K+    ++    DE   + V++Y               +I  Y+K G MT 
Sbjct: 632 VKSTFSSILKVC---TSSACLDE--GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTD 686

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR +F+  P RD+V+W+ +I+GYAQNG    AV+    M  ++V P++F  VSL++ACS 
Sbjct: 687 AREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSS 746

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
              L+    V + + +  +      V AAL+ M AKCG+   A E+F+ +  ++VV++ +
Sbjct: 747 FSALEEGKRVHAEIVKRKLQ-GDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNA 805

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI   + HG   +A+  F+ M  EG+ PD   FT +L+AC+H GLV +G++ F +M++ Y
Sbjct: 806 MINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEY 865

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            ++P+ EHY C+V LLGR    + A  L+N MP  P A+ W  LLGAC+++ +I L E  
Sbjct: 866 GVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHA 925

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           AN   +L  +N   Y+LLSN+YA A RW DV  +R  M+ RG+RK PG S
Sbjct: 926 ANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 975



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 248/500 (49%), Gaps = 19/500 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H   +++GL  D  +    +++C       S   A F    + +  ++N L+   +Q+
Sbjct: 250 RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQA-FKGTADRDVVVYNALIAALAQH 308

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              +E F  + R+  +    ++ T+  ++ ACS   ++  G  IH+ +   G   DV +G
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
            +LI +Y +  ++  AR++F  MP+R+++SW A+I GYA   D  EA  ++  M      
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSL 286
              V++  L+            + + +++    + S       +++ Y + G +  A+++
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE    RDV++W+++I+G+AQ+G  + A K+F +M ++ ++PD     S++S C     L
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +L   +   ++ S + L   ++  AL++M  +CG++  A  +F ++ +RDV+S+ +MI G
Sbjct: 549 ELGKQIHGRITESGLQLD-VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            +  G   +A+ LF +M +EG  P +  F+ +L  C+    +++G +    + N    + 
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELD 667

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           +    A ++    ++G +  A E+ + MP     S W  ++     Y+   LG+      
Sbjct: 668 TGVGNA-LISAYSKSGSMTDAREVFDKMPSRDIVS-WNKIIAG---YAQNGLGQTAVEFA 722

Query: 527 FELEPQ----NAGSYVLLSN 542
           ++++ Q    N  S+V L N
Sbjct: 723 YQMQEQDVVPNKFSFVSLLN 742



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/543 (25%), Positives = 251/543 (46%), Gaps = 48/543 (8%)

Query: 32  PKPSCLLSA--LTLIKKC---KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           P+P+    A  + L++ C   +L     ++H+ +++  +  D  L    I++     + L
Sbjct: 20  PRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVL 79

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
             +  VF  +   +   WN+L+  Y+Q     + F +F  +     +P+K T+  ++ AC
Sbjct: 80  D-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
                +  G  IH+ +I+ G   D  V  SL+ +YGK  ++  AR+VF  +  R+VVS+ 
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL----FDE 258
            M+  YA    + E   +F  M         V++  L+        L   +++     +E
Sbjct: 199 TMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
               ++   T ++    + GD+ SA+  F+   DRDVV ++ALI+  AQ+G   EA + +
Sbjct: 259 GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQY 318

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M S  V  +    +S+++ACS    L+    + S++S      S   +  AL+ M A+
Sbjct: 319 YRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS-SDVQIGNALISMYAR 377

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG++ +A ELF TMP RD++S+ ++I G +      +A+ L+ +M SEG+ P  V F  +
Sbjct: 378 CGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHL 437

Query: 439 LTACSHVGLVEDGWRFFEAM----------------------------QNVYAIVPSPE- 469
           L+AC++     DG    E +                            QNV+    + + 
Sbjct: 438 LSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDV 497

Query: 470 -HYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLYSDIELGELVANR 525
             +  M+    + G  ++AY+L   M    +EP    + ++L  CK    +ELG+ +  R
Sbjct: 498 ISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR 557

Query: 526 LFE 528
           + E
Sbjct: 558 ITE 560



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 5/165 (3%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
            S ++L+  C   + L +   VH+ I+K+ L+ D  + A  IS+ ++       +  VF+
Sbjct: 735 FSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISM-YAKCGSQGEAQEVFD 793

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            I+  N   WN ++  Y+Q+    +    F  + +E   PD  TF  ++ AC+H   V E
Sbjct: 794 NIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLE 853

Query: 155 GTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           G  I +++   +GV   +     L+ L G+ +    A  + ++MP
Sbjct: 854 GYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMP 898


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 171/518 (33%), Positives = 284/518 (54%), Gaps = 62/518 (11%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+H+I  GL Q  + +   I+L  S ++ L ++  +F+ + +P+T+L+NT+ + Y+ +
Sbjct: 6   RLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFRVYAAS 65

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              +    +   + R    PD YTFP ++KACS +  + +G  +H   +++G+   VFV 
Sbjct: 66  PTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVE 125

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SLI LYG    +  AR+VF                               D M  R   
Sbjct: 126 NSLIHLYGSNSRMDSARRVF-------------------------------DGMGYRDIA 154

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
           SW  L+        + +AR++FDEMPER+VVSY+                          
Sbjct: 155 SWTTLLACYANSCSVEAARKVFDEMPERSVVSYS-------------------------- 188

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
                A+++ Y +  +  EA+++F ++ S  ++P +  ++S++ AC+ +G LD+  WV S
Sbjct: 189 -----AMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYS 243

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           ++  S  D   + +  AL+DM  KCG+++ A  +FE    + V  + +M+ GL++HG G 
Sbjct: 244 FVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGE 303

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           Q +  F++M+  G+ PDEV F  +L+ CSH GLV +G  +F+ M++ + + P+ EH+ C+
Sbjct: 304 QLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCV 363

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G +  A +L++ MP EP+A+ WGALL AC++Y ++E+GEL A  L + EP N 
Sbjct: 364 VDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIKDEPWNG 423

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             Y+ L ++Y  A RW +V  V+ KMKE G RK PGCS
Sbjct: 424 ALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCS 461


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/458 (39%), Positives = 266/458 (58%), Gaps = 43/458 (9%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPERNVVSWTAMIVGYASV 215
           IH  V+R G+D+  ++ T LI    K        AR+V + +  RN   WTA+I GYA  
Sbjct: 68  IHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIE 127

Query: 216 GDLVEAKTVFDLM--PERSNVSW------------------------------------- 236
           G   EA  ++  M   E + VS+                                     
Sbjct: 128 GKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVG 187

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N +I   VK   +  AR++FDEMPER+V+S+T +I  YA+VG+M  A  LFE+ P +D+V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           AW+A+++G+AQN +P EA++ F  M    ++ DE  +   +SAC+Q+G    ++      
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307

Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
            +S    S   VI +AL+DM +KCGN++ A  +F +M N++V +Y SMI GL+ HG  ++
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367

Query: 416 AVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           A+ LF  M+++  + P+ V F   L ACSH GLV+ G + F++M   + + P+ +HY CM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGRTG L+ A EL+ +M VEPH   WGALLGAC+++++ E+ E+ A  LFELEP   
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDII 487

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+Y+LLSN+YA+A  W  V  VR  +KE+GL+K P  S
Sbjct: 488 GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 201/415 (48%), Gaps = 45/415 (10%)

Query: 22  NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           N    + I+  K   + S ++ +  C     + Q+H H+++KGL+Q   ++   I     
Sbjct: 34  NSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTK 93

Query: 82  LATPLS-YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
           L  P+  Y+  V   +   N FLW  +++GY+   +F E   ++  + +EE  P  +TF 
Sbjct: 94  LGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFS 153

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            ++KAC  +  +  G   HA   R      V+VG ++ID+Y K + I CARKVFDEMPER
Sbjct: 154 ALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPER 213

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM- 259
           +V+SWT +I  YA VG++  A  +F+ +P +  V+W A++ G  +    + A + FD M 
Sbjct: 214 DVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME 273

Query: 260 ----------------------------------------PERNVVSYTTMIDGYAKVGD 279
                                                   P  +VV  + +ID Y+K G+
Sbjct: 274 KSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMS 338
           +  A ++F +  +++V  +S++I G A +G+  EA+ +F  M ++  ++P+    V  + 
Sbjct: 334 VEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALM 393

Query: 339 ACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           ACS  G +D    V DS      +  +R H    +VD+  + G +  A EL +TM
Sbjct: 394 ACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY-TCMVDLLGRTGRLQEALELIKTM 447


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 310/580 (53%), Gaps = 22/580 (3%)

Query: 3   KIDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIK 62
           K  EPN+  K       + NC        P      S L++     L    +Q+H  +I 
Sbjct: 50  KCGEPNSAVK---VFEDMRNCQTK-----PNSITFASVLSICASEALSEFGNQLHGLVIS 101

Query: 63  KGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT 122
            G   D  LVA+ +   +S    LS +  +FN + + N   WN ++ G+ QN    E   
Sbjct: 102 CGFHFD-PLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASL 160

Query: 123 IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
           +F  +I     PD  TF   + + +   S+++G  IH  ++R G+  DVF+ ++LID+Y 
Sbjct: 161 LFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYF 220

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI-- 240
           K +++  A K+F +    ++V  TA+I GY   G   +A  +F  + E   +S NA+   
Sbjct: 221 KCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEK-MSPNAVTLA 279

Query: 241 ------GGL--VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
                  GL  + +G    A  L   + ER  V  + ++D YAK G +  A  +F   P+
Sbjct: 280 SVLPACAGLATLNLGKELHANILKHGLDERRHVG-SAIMDMYAKCGRLDLAYQIFRRMPE 338

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           +D V W+A+I+  +QNG+P EA+ +F  M  + +  D   + + +SAC+ +  L     +
Sbjct: 339 KDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAI 398

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
            S++ +   D S     +AL+DM  KCGN+  A  +F+ M  ++ VS+ S+I     HGH
Sbjct: 399 HSFMIKGAFD-SEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGH 457

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
              +++LF +ML +G+ PD V F  +L+AC H G V+ G ++F  M   Y I    EHYA
Sbjct: 458 LEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYA 517

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           C+VDL GR G L  A+E + +MP  P    WG LLGAC+++ ++EL E+ +  L +L+P+
Sbjct: 518 CIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPE 577

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N+G YVLLSN++A A +W  V  +RS MK+RG++K+PG S
Sbjct: 578 NSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYS 617



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 237/466 (50%), Gaps = 25/466 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++ N +  LWN +L G+ +         +F  +   +  P+  TF  V+  C+    
Sbjct: 29  LFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEAL 88

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              G  +H  VI  G   D  V  +L+ +Y K  ++S A K+F+ MP+ NVV+W  MI G
Sbjct: 89  SEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAG 148

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----N 263
           +   G + EA  +F  M        ++++ + +  + +   L+  +++   +       +
Sbjct: 149 FVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALD 208

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           V   + +ID Y K  D+  A  +F+ + + D+V  +A+ISGY  NG  ++A++IF  +  
Sbjct: 209 VFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLE 268

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + + P+   L S++ AC+ +  L+L   + + + +  +D  R HV +A++DM AKCG +D
Sbjct: 269 EKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLD-ERRHVGSAIMDMYAKCGRLD 327

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A ++F  MP +D V + ++I   S +G  ++A+ LF +M  EGL+ D V+ +  L+AC+
Sbjct: 328 LAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACA 387

Query: 444 HVGLVEDGWRFFEAM------QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           ++  +  G      M        V+A        + ++D+ G+ G+L  A  + + M  E
Sbjct: 388 NLPALHHGKAIHSFMIKGAFDSEVFA-------ESALIDMYGKCGNLSVARCVFDMMR-E 439

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFE--LEPQNAGSYVLLS 541
            +  +W +++ A   +  +E+   + +++ E  ++P +     +LS
Sbjct: 440 KNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILS 485



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 171/353 (48%), Gaps = 11/353 (3%)

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G + D FVG+SLI LY +   I  AR++FD+MP ++ V W  M+ G+   G+   A  VF
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYAKV 277
           + M        +     ++ I    +  +  +++           + +    ++  Y+K 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G ++ A  LF   PD +VV W+ +I+G+ QNG  DEA  +FS+M S  V PD     S +
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
            + ++  +L     +  Y+ R  + L    + +AL+D+  KC ++  A ++F+   N D+
Sbjct: 182 PSVTESASLKQGKEIHGYILRHGIALD-VFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           V   ++I G  ++G    A+ +F  +L E ++P+ V    VL AC+ +  +  G      
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           +   + +       + ++D+  + G L  AY++   MP E  A  W A++  C
Sbjct: 301 ILK-HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP-EKDAVCWNAIITNC 351


>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 268/473 (56%), Gaps = 71/473 (15%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK----------- 183
           + +TF  ++K      ++ +G  IH  +++ G    VFV  SL+  Y             
Sbjct: 9   NSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRV 68

Query: 184 ---------------------RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
                                R EI  A  + D+MPERN+V+W +++ G +  G++  A 
Sbjct: 69  FEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAH 128

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
           +VF+ MP R+ VSWN++I G V+IGD+R+A+ +F +MPE+ VVS+T MI GYA  GD+ S
Sbjct: 129 SVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKS 188

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACS 341
           A ++F   P ++VV+W+A+ISGY  N + D+A+ +F  M  +   +PD+  L+S++SAC+
Sbjct: 189 AENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACA 248

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            +G+L+   W++SY+ ++ + LS   +  AL+DM AKCG+++ A E+F  M  R ++++ 
Sbjct: 249 HLGSLEHGKWINSYIKKNKLHLS-IPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWT 307

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           +M+ GL+++G  R+A++LFD+M  EG  PD+V F  VL+AC+H GLVE+G R F+ M   
Sbjct: 308 TMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQE 367

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           + I P  EHY CMVDLLGR G L+ A                                  
Sbjct: 368 FGIKPRIEHYGCMVDLLGRAGKLEEA---------------------------------- 393

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
              ++ + EP N     L+SN+ A+  RW DV   R  M+++ + K+PGCSS+
Sbjct: 394 ---KIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSI 443



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 142/304 (46%), Gaps = 25/304 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVR-LIREEAVPDKYTFPLVIK 144
           L  +  +FN +   N   WN ++ GY  N  F +   +F   LI  E  PD+ T   ++ 
Sbjct: 186 LKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILS 245

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+H+ S+  G  I++ + +  +   + +G +LID++ K  ++  A++VF  M +R +++
Sbjct: 246 ACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIIT 305

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT M+ G A  G   EA  +FD M     +  +V + A++      G +   +++FD+M 
Sbjct: 306 WTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMV 365

Query: 261 ER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY-AQNGQPDEA 314
           +       +  Y  M+D   + G +  A+ + +  P     ++  L+S   A  G+ ++ 
Sbjct: 366 QEFGIKPRIEHYGCMVDLLGRAGKLEEAK-IMDQEPSNP--SYLTLVSNLSASFGRWEDV 422

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           +     M  + ++         +  CS +    + N V  +L++    + R  +  ALV 
Sbjct: 423 LSFRVAMRQQRMEK--------VPGCSSI---QVGNRVHEFLAKDTRHVQRKEIYRALVC 471

Query: 375 MNAK 378
           +N +
Sbjct: 472 LNGQ 475


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/580 (32%), Positives = 311/580 (53%), Gaps = 52/580 (8%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF---NR 95
           + L L++KC  + H  Q+ + I++  L      ++  I L  ++  P +   AV    + 
Sbjct: 33  ATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLI-LFSAITHPENLDMAVLLFRHH 91

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
             +PN +++NT++   S +    + F  +  L+     P++ TF  +++A   +  V + 
Sbjct: 92  TPHPNLYIYNTMISALSLSLN--QSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQVMQ- 148

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH   I  G     ++  +L+ +Y + +++  A +VF +M   + VS+  MI GYA  
Sbjct: 149 --IHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKK 206

Query: 216 GDLVEAKTVF------DLMPE--------------------RSNVSW------------- 236
           G  +EA           L P+                    +S  +W             
Sbjct: 207 GHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLI 266

Query: 237 --NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
             NAL+   VK  +LR A+ +F+ +  ++ +S+ TMI GYAKVG++  A + FE  P RD
Sbjct: 267 LNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRD 326

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           +V+W+++I+GYAQ G      ++F +M ++N+ PD   +++L+SA +++G L    W+  
Sbjct: 327 LVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHG 386

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           ++ R  M +  A + +A +DM  KCG++ RA  +F  +  +DV  + +MI G + HG+G 
Sbjct: 387 WVVRMQMKID-AFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGS 445

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ LF  M  E + P++V F  VLTACSH G V  G R F +M+  Y I P  EHY C+
Sbjct: 446 KALQLFYEM-QEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCL 504

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR+G      +++  MP++P  S WGA+L AC+ Y +IE+ E+    L +LEP+  
Sbjct: 505 VDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKE 564

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           G YVLLSNIYAT+ RW     +R  M+ RG++K  GCSS+
Sbjct: 565 GGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/479 (36%), Positives = 271/479 (56%), Gaps = 11/479 (2%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN  L+  +  S F E  +++  ++R  + PD ++FP ++K+C+ +     G  +H  VI
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV--VSWTAMIVGYASVGDLVEA 221
           R G + + FV T+LI +Y K   +  ARKVF+E P  +   V + A+I GY +   + +A
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGD----LRSARQLFDEMPERNVVSYTTMIDG---- 273
             +F  M E      +  I GLV +      L   R L  E  +    S   +++     
Sbjct: 138 AFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITM 197

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K G + S R LF+  P + ++ W+A+ISGY+QNG   + +++F  M S  V PD F L
Sbjct: 198 YMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTL 257

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           VS++S+C+ +G   +   V   L  ++       +  AL+ M A+CGN+ +A  +F+ MP
Sbjct: 258 VSVLSSCAHLGAKKIGQEVGE-LVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMP 316

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            + +VS+ +MI    +HG G   ++LFD M+  G+ PD   F +VL+ACSH GL + G  
Sbjct: 317 VKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 376

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F AM+  Y + P PEHY+C+VDLLGR G L  A E ++SMPVEP  + WGALLGACK++
Sbjct: 377 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIH 436

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++++ EL   ++ E EP N G YVL+SNIY+ +     +  +R  M+ER  RK PG S
Sbjct: 437 KNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 495



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 202/432 (46%), Gaps = 26/432 (6%)

Query: 24  SRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA 83
           S S+P  F  P  L S  +L     L     Q+H H+I+ G E +  ++   IS+ +   
Sbjct: 44  SGSSPDAFSFPFILKSCASL----SLPVSGQQLHCHVIRGGCEAEPFVLTALISM-YCKC 98

Query: 84  TPLSYSTAVFNRIVNPNT----FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
             +  +  VF    NP++      +N L+ GY+ NS+  +   +F R+       D  T 
Sbjct: 99  GLVEDARKVFEE--NPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTI 156

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             ++  C+    +  G ++H   ++ G   +V V  S I +Y K   +   R++FDEMP 
Sbjct: 157 LGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPV 216

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN--ALIGGLVKIGDLRSARQLFD 257
           + +++W A+I GY+  G   +   +F+ M + S V  +   L+  L     L  A+++  
Sbjct: 217 KGLITWNAVISGYSQNGLAYDVLELFEQM-KSSGVCPDPFTLVSVLSSCAHL-GAKKIGQ 274

Query: 258 EMPER--------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           E+ E         NV     +I  YA+ G++  AR++F+  P + +V+W+A+I  Y  +G
Sbjct: 275 EVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHG 334

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             +  + +F DM  + ++PD  + V ++SACS  G  D    +   + R +         
Sbjct: 335 MGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY 394

Query: 370 AALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
           + LVD+  + G +D A E  ++MP   D   + +++    IH +   A   F +++    
Sbjct: 395 SCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--F 452

Query: 429 TPDEVAFTIVLT 440
            P  + + ++++
Sbjct: 453 EPMNIGYYVLMS 464



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+  +   A      E++ ++  M      PD F    ++ +C+ +        +  ++
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC--SMIKGLSIHGHGR 414
            R   + +   V+ AL+ M  KCG ++ A ++FE  P+   +  C  ++I G + +    
Sbjct: 77  IRGGCE-AEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F RM   G++ D V    ++  C+
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCT 164


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/540 (34%), Positives = 293/540 (54%), Gaps = 42/540 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
           L  ++ C     L Q+ +H+ K  L      V+  ++ C  S +  ++++  +F+++ NP
Sbjct: 54  LLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNP 113

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           NT++WNT+++GYS+       F  F +++++    D  +F   +KAC   L V EG ++H
Sbjct: 114 NTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVH 173

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V + G    + V   L+  YG R  +  AR VFDE                       
Sbjct: 174 CVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDE----------------------- 210

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-----PERNVVSYTTMIDGY 274
                   + ER  VSW ++I G  K      A +LFD M      E N V+   ++   
Sbjct: 211 --------ISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSC 262

Query: 275 AKVGDMTSARSLFEAAPDRDVVA----WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           ++ GD+   ++  E    R+V       +A++  Y + G  D A +IF  M      P E
Sbjct: 263 SQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTM-GAAFAPME 321

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             L  ++  C Q+G LD+  W+     R   +     +  AL+DM AKCG +  AA++F 
Sbjct: 322 NTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKVFN 381

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            MP R++VS+ SMI   + HGH +QA+S+F+RM+S G  PD++    VL+ACSH GLV +
Sbjct: 382 DMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLVAE 441

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F+ M+  Y I P  EHYACM+DLLGR G L+ AYEL+  MP+EP A+AWGAL+ AC
Sbjct: 442 GQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALVHAC 501

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ ++E+ ++ A RL EL+P+++G YVLL+NI A+  RW DV + R  M+ER ++KIPG
Sbjct: 502 RMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERRVKKIPG 561


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 288/529 (54%), Gaps = 16/529 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           Q+HS++ K G+  D+ +    + L   C  + T L     +FN     N  LWN +L  +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL----VIFNSSDRTNVVLWNLMLVAF 320

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            Q +   + F +F ++      P+++T+P +++ C+    +  G  IH+  ++ G + D+
Sbjct: 321 GQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDM 380

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE- 230
           +V   LID+Y K   +  AR+V + + E++VVSWT+MI GY       +A   F  M + 
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKC 440

Query: 231 ---RSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSA 283
                N+   + I G   I  +R   Q+   +       +V  +  +++ YA+ G +  A
Sbjct: 441 GIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            S FE    +D +  + L+SG+AQ+G  +EA+K+F  M    V+ + F  VS +SA + +
Sbjct: 501 FSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             +     + + + ++        V  AL+ +  KCG+ + A   F  M  R+ VS+ ++
Sbjct: 561 AEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTI 619

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I   S HG G +A+ LFD+M  EG+ P++V F  VL ACSHVGLVE+G  +F++M + Y 
Sbjct: 620 ITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYG 679

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P P+HYAC++D+ GR G L  A + +  MP+   A  W  LL ACK++ +IE+GE  A
Sbjct: 680 IRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAA 739

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             L ELEP ++ SYVLLSN YA  ++W +   VR  M++RG+RK PG S
Sbjct: 740 KHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRS 788



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 217/462 (46%), Gaps = 11/462 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+  + +GL + + +V + +   +S    +  +  VF  +   +   W  +L GY+QN
Sbjct: 63  EIHAKAVTRGLGK-YRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   ++ ++ R   VP  Y    V+ +C+      +G  IHA   + G   ++FVG
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            ++I LY +      A +VF +MP R+ V++  +I G+A  G    A  +F+ M      
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 231 RSNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
              V+ ++L+     +GDL+   Q    LF      + +   +++D Y K GD+ +A  +
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F ++   +VV W+ ++  + Q     ++ ++F  M +  ++P++F    ++  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           DL   + S   ++  + S  +V   L+DM +K G +++A  + E +  +DVVS+ SMI G
Sbjct: 362 DLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              H   + A++ F  M   G+ PD +     ++ C+ +  +  G +   A   V     
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSG 479

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
               +  +V+L  R G ++ A+     M ++   +  G + G
Sbjct: 480 DVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSG 521


>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 523

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 279/486 (57%), Gaps = 41/486 (8%)

Query: 128 IREEAVPDKYTFPLVIKACSHVL-SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           IR   V      PL++KAC+ V+  V  G  +H+  I++GV  DV VG+SLI +YGK   
Sbjct: 37  IRRRGVYFPGWVPLILKACACVVPRVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKWGC 96

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLV--------------------------- 219
           +  ARKVFDEMPERNV +W AMI GY   GD V                           
Sbjct: 97  VVSARKVFDEMPERNVATWNAMIGGYMGNGDAVSASGLFEEISVCRNTVTWIEMMKGYGK 156

Query: 220 -----EAKTVFDLMP-ERSNV-SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
                +A+ +F+ MP E  NV +W+ ++G  V    +  AR+ F+++PE+N   ++ MI 
Sbjct: 157 RKEIEKARELFERMPFELKNVKAWSVMLGVYVSHRKMEDARKFFEDIPEKNSFVWSLMIS 216

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           GY ++GD+  A S+F     RD+V W+ LI+GYAQNG   +A+  F +M  +  +PD   
Sbjct: 217 GYFRIGDVHEATSVFYRVFARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVT 276

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           + S++SAC+Q G LD+   V S ++R  ++L++  V  AL+DM AKCG+++ A  +FE++
Sbjct: 277 VSSVLSACAQSGRLDVGREVHSLINRKGIELNQ-FVSNALIDMYAKCGDLENATSVFESL 335

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
             R +  + SMI  L+IHG G +A+ +F  M S  L PDE+ F  VLTAC H G + +G 
Sbjct: 336 SLRSLACWNSMISCLAIHGKGNEALEMFRTMGSLDLKPDEITFLAVLTACVHGGFLMEGL 395

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           + F  M+    + P+ +H+ C++ LLGR+G LK AY L+  MPV+P+ +  GALLGACK+
Sbjct: 396 KIFSEMKT-QDVKPNVKHFGCLIHLLGRSGKLKEAYRLVREMPVKPNDTVLGALLGACKV 454

Query: 513 YSDIELGELVANRLFEL----EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           + D E+ E V   +  +              +SN+YA  +RW     +R +M++RGL K 
Sbjct: 455 HMDTEIAEQVMKIIVTVGSITNSDCENHLASISNLYAHTERWETAEALRVEMEKRGLEKS 514

Query: 569 PGCSSL 574
           PG SS+
Sbjct: 515 PGLSSV 520



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 119/258 (46%), Gaps = 38/258 (14%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +T+VF R+   +  +WNTL+ GY+QN    +    F  +  E   PD  T   V+ AC+ 
Sbjct: 227 ATSVFYRVFARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACAQ 286

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
              +  G  +H+ + R G++ + FV  +LID+Y K  ++  A  VF+ +  R++  W +M
Sbjct: 287 SGRLDVGREVHSLINRKGIELNQFVSNALIDMYAKCGDLENATSVFESLSLRSLACWNSM 346

Query: 209 IVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           I   A  G   EA  +F      DL P+   +++ A++   V  G L    ++F EM  +
Sbjct: 347 ISCLAIHGKGNEALEMFRTMGSLDLKPDE--ITFLAVLTACVHGGFLMEGLKIFSEMKTQ 404

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           +V                             +V  +  LI    ++G+  EA ++  +M 
Sbjct: 405 DV---------------------------KPNVKHFGCLIHLLGRSGKLKEAYRLVREM- 436

Query: 323 SKNVQPDEFILVSLMSAC 340
              V+P++ +L +L+ AC
Sbjct: 437 --PVKPNDTVLGALLGAC 452



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VHS I +KG+E +  +    I + ++    L  +T+VF  +   +   WN+++   + +
Sbjct: 295 EVHSLINRKGIELNQFVSNALIDM-YAKCGDLENATSVFESLSLRSLACWNSMISCLAIH 353

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            +  E   +F  +   +  PD+ TF  V+ AC H   + EG  I + +    V  +V   
Sbjct: 354 GKGNEALEMFRTMGSLDLKPDEITFLAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHF 413

Query: 175 TSLIDLYGKRKEISCARKVFDEMP 198
             LI L G+  ++  A ++  EMP
Sbjct: 414 GCLIHLLGRSGKLKEAYRLVREMP 437


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 299/546 (54%), Gaps = 21/546 (3%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGL----EQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           TL+   K +  + ++H+ +I  G+      +  L+  +  L H     +  +  VF++  
Sbjct: 12  TLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLGH-----IESARQVFDKSP 66

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
                 WN ++  YS+     E  +++ R+  E   PD  T+ +V+KAC+  L +R G  
Sbjct: 67  QCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEE 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
                +  G  +DVFVG ++++LY K  ++  A +VFD+M  R++V WT MI G A  G 
Sbjct: 127 TWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQ 186

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVK----IGDLRSARQLFDEMPERN----VVSYTT 269
             EA  ++  M ++       ++ GL++    +G  +    +   M  ++    V+  T+
Sbjct: 187 AREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTS 246

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++D YAK G +  A  +F     ++V++WSALISG+AQNG    A+++  DM S   +PD
Sbjct: 247 LVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPD 306

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRS-HMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
              LVS++ ACSQVG L L   V  Y+ R  H D   +    A++DM +KCG++  A  +
Sbjct: 307 SVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSS---TAVIDMYSKCGSLSFARTV 363

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F+ +  RD +S+ ++I    IHG G +A+SLF +M    + PD   F  +L+A SH GLV
Sbjct: 364 FDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLV 423

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           E G  +F  M N Y I PS +HYACMVDLL R G ++ A EL+ SM  EP  + W ALL 
Sbjct: 424 EKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLS 483

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
            C  +    +GE+ A ++ EL P + G Y L+SN +ATA RW +V  VR  MK+ G++K+
Sbjct: 484 GCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKV 543

Query: 569 PGCSSL 574
           PG S +
Sbjct: 544 PGYSVM 549


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 185/545 (33%), Positives = 303/545 (55%), Gaps = 14/545 (2%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP- 99
           L LI +C       Q+ + +I + + +D   +   ++     A   +YS+ + + I +  
Sbjct: 10  LELISRCSSLRVFKQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSIRSVL 69

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           ++F +NTLL  Y+   +      ++   +     PD +TFP V KAC     +REG  IH
Sbjct: 70  SSFSYNTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIH 129

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V + G  +D++V  SL+  YG   E   A KVFD+MP R+VVSWT +I G+   G   
Sbjct: 130 GTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYK 189

Query: 220 EAKTVFDLMPERSNVSWNALIGGLV---KIGDLRSARQLFDEMPER-NVVSYTT---MID 272
           EA   F  M    N++    +  LV   ++G L   + +   + +R +++S  T   +ID
Sbjct: 190 EALDTFSKMDVEPNLA--TYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALID 247

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEF 331
            Y K   ++ A ++F     +D V+W+++ISG     + +EA+++FS M  S  ++PD  
Sbjct: 248 MYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGH 307

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
           IL S++SAC+ +G +D   WV  Y+  + +     H+  A+VDM AKCG ++ A ++F  
Sbjct: 308 ILTSVLSACASLGAVDYGRWVHEYVLSAGIKWD-THIGTAIVDMYAKCGYIETALKIFNG 366

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +  ++V ++ +++ GL+IHGHG +++  F+ M+  G  P+ V F  +L AC H GLV++G
Sbjct: 367 IRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEG 426

Query: 452 WRFFEAMQNV-YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
            R+F  M+   Y + P  EHY C++DL  R G L  A EL+ +MPV+P     GA+L AC
Sbjct: 427 RRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSAC 486

Query: 511 KLYSDI-ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           K    + EL + + +   E+E +++G YVLLSNI+A   RW DV  +R  MK +G+ K+P
Sbjct: 487 KSRGTLMELPKEILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKVP 546

Query: 570 GCSSL 574
           G SS+
Sbjct: 547 GSSSI 551


>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 168/438 (38%), Positives = 257/438 (58%), Gaps = 33/438 (7%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PD  +    + +C+   S+   + +H+  +R G   DV+V ++ +  Y +  +++ A ++
Sbjct: 70  PDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERL 129

Query: 194 FDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           F    +  +VV+WT M+ G+A+ GDL  A+  FD MPER+ VSWNA++G     G L  A
Sbjct: 130 FSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAYASAGMLSKA 189

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           R+LFD MP RN  S                               WS++++G  ++ + +
Sbjct: 190 RKLFDIMPSRNAAS-------------------------------WSSMVTGLVRSNRCE 218

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+++FS+M    V P+E  LVS +SACS + +L+   WV +Y  R    +S   +  A+
Sbjct: 219 EALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLV-LATAI 277

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM  KCG +  A  +F  MP +++ S+ SMI GL+++G   QA+SLF +M   G+ P++
Sbjct: 278 VDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPND 337

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + F  +L ACSH GLV++G   F  M N + I P  EHY  MVDLLGR GH++ A + +N
Sbjct: 338 ITFIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVN 397

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           SMPVEPH   WGAL GACK++ ++ELGE +A +L ELEP++   Y+LLSNIY  ++RW D
Sbjct: 398 SMPVEPHPGLWGALAGACKIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGASNRWDD 457

Query: 553 VCLVRSKMKERGLRKIPG 570
           +  VR  +K+R + K  G
Sbjct: 458 MATVRRLLKDRKVPKGTG 475



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            ++ A  LS +  +F+ + + N   W++++ G  +++R  E   +F  +I    VP++  
Sbjct: 179 AYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESA 238

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
               + ACS + S+  G  +HA   R      + + T+++D+YGK   I  A +VF  MP
Sbjct: 239 LVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMP 298

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQ 254
            +N+ SW +MI G A  G  ++A ++F  M       +++++  L+G     G +   R 
Sbjct: 299 VKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRW 358

Query: 255 LFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAP 291
           LF+ M     +      Y  M+D   + G +  A     + P
Sbjct: 359 LFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMP 400


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 294/502 (58%), Gaps = 14/502 (2%)

Query: 71  LVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130
           +VA F++ C      L  +  +F +I +PN   W T+L G++++ + +E   +F R+  +
Sbjct: 210 MVAGFVNNC-----DLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCK 264

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
             V    ++  +I A    L + E   +          +D    T++I+ Y +  ++  A
Sbjct: 265 NVV----SWNAMIAAYVQDLQIDEAVKLFKETPY----KDCVSWTTMINGYVRVGKLDEA 316

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
           R+V+++MP ++V + TA++ G    G + EA  VF  + +R  + WN++I G  + G + 
Sbjct: 317 REVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMS 376

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
            A  LF +MP +N VS+ TMI GYA+ G+M  A  +FEA   R+V++W++LI+G+ QNG 
Sbjct: 377 EALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGL 436

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
             +A+K    M  +  +PD+      +S+C+ +  L +   +   + +S   ++   V  
Sbjct: 437 YLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGY-INDLFVSN 495

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           AL+ M AKCG +  A ++F+ +   D++S+ S+I G +++G+  +A   F++M SEG  P
Sbjct: 496 ALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVP 555

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           DEV F  +L+ACSH GL   G   F+ M   +AI P  EHY+C+VDLLGR G L+ A+ +
Sbjct: 556 DEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNI 615

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  M V+ +A  WG+LL AC+++ ++ELG++ A RL ELEP NA +Y+ LSN++A A RW
Sbjct: 616 VRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRW 675

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
            DV  +R  M+ER   K+PGCS
Sbjct: 676 EDVERLRVLMRERRAGKLPGCS 697



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 219/457 (47%), Gaps = 69/457 (15%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +V S++I K     +S+V  F     +    +S +  +F+++   N   WNT++ GY  N
Sbjct: 38  RVFSNVIHKNHATYNSMVTVF-----AKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHN 92

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE--DVF 172
           +   E   +F  +    A  D +++ L+I   +     R+G    A  +   V +  D  
Sbjct: 93  NMVEEAHKLFDLM----AERDNFSWALMITCYT-----RKGMLEKARELFELVPDKLDTA 143

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
              ++I  Y K+     A KVF++MP +++VS+ +M+ GY   G +  A   F+ M ER+
Sbjct: 144 CWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERN 203

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
            VSWN ++ G V   DL SA +LF+++P+ N VS+ TM+ G+A+ G +  AR LF+  P 
Sbjct: 204 VVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPC 263

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-------------------------NVQ 327
           ++VV+W+A+I+ Y Q+ Q DEAVK+F +   K                         N  
Sbjct: 264 KNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQM 323

Query: 328 P--DEFILVSLMSACSQVGNLDLSNWVDSYLSRSH--------------------MDLSR 365
           P  D     +LMS   Q G +D ++ V S L++                      ++L R
Sbjct: 324 PYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFR 383

Query: 366 AHVIAALVDMN------AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
              +   V  N      A+ G MDRA E+FE M  R+V+S+ S+I G   +G    A+  
Sbjct: 384 QMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKS 443

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
              M  EG  PD+  F   L++C+++  ++ G +  E
Sbjct: 444 LVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHE 480



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 179/341 (52%), Gaps = 19/341 (5%)

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
           ++VF     I   GK+ +I  A++VF  +  +N  ++ +M+  +A  G + +A+ +FD M
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
            +R+ VSWN +I G +    +  A +LFD M ER+  S+  MI  Y + G +  AR LFE
Sbjct: 75  SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFE 134

Query: 289 AAPDR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
             PD+ D   W+A+I+GYA+ G+ D+A K+F  M  K++        S+++  +Q G + 
Sbjct: 135 LVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYN----SMLAGYTQNGKMG 190

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L+      ++  ++ +S   ++A  V+    C ++  A ELFE +P+ + VS+ +M+ G 
Sbjct: 191 LAMKFFERMAERNV-VSWNLMVAGFVN---NC-DLGSAWELFEKIPDPNAVSWVTMLCGF 245

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           + HG   +A  LFDRM  + +    V++  ++ A      +++  + F+  +  Y    S
Sbjct: 246 ARHGKIVEARKLFDRMPCKNV----VSWNAMIAAYVQDLQIDEAVKLFK--ETPYKDCVS 299

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
              +  M++   R G L  A E+ N MP +  A+    + G
Sbjct: 300 ---WTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSG 337


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 171/489 (34%), Positives = 277/489 (56%), Gaps = 12/489 (2%)

Query: 86  LSYSTAVFNR-IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
           L  + A+F+R     N   W  LL GY++  R  E   +F R+     V    ++  +++
Sbjct: 82  LHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVV----SWNTMLE 137

Query: 145 ACSHVLSVREG-TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           A +    VR+  T      +R     D      L+    +   +  ARK+FD MPERNV+
Sbjct: 138 AYTSAGRVRDAWTLFDGMPVR-----DAGSWNILLAALVRSGNMDKARKLFDRMPERNVM 192

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           +WT M+ G A  G + EA+ +FD MPER+ VSWNA+I G  +   +  A  LF +MP R+
Sbjct: 193 AWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRD 252

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           + S+  MI G+ +  D+  A+ LF+  P R+V+ W+ +++GY Q+ Q + A++IF+ M  
Sbjct: 253 IASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLV 312

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + ++P++   +  + ACS +  L     V   + ++        + + L+++ AKCG + 
Sbjct: 313 EGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFD-TFIESTLMNLYAKCGEIR 371

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A ++F+    +DV+S+  MI   + HG G +A+ L+++M  +G  P++V +  +L+ACS
Sbjct: 372 LARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACS 431

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV++G R FE M    +I    EHY C++DL  R G L  A  L++ + VEP ++ W
Sbjct: 432 HSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVW 491

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLG C  + +  +G+L A  L E EP NAG+Y LL NIYA+A +W +   +RS+M +R
Sbjct: 492 NALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDR 551

Query: 564 GLRKIPGCS 572
           GL+K PGCS
Sbjct: 552 GLKKQPGCS 560



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 188/381 (49%), Gaps = 88/381 (23%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVF 225
           D DV   T+L+  Y ++  +  AR +FD  P+  RNVV+WTA++ GYA  G + EA+ +F
Sbjct: 63  DRDVVSWTALVAAYARQGMLHDARALFDR-PDARRNVVTWTALLSGYARAGRVDEAEALF 121

Query: 226 DLMPERSNVSWNA-------------------------------LIGGLVKIGDLRSARQ 254
             MPER+ VSWN                                L+  LV+ G++  AR+
Sbjct: 122 QRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARK 181

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           LFD MPERNV+++TTM+ G A+ G +  AR+LF+  P+R+VV+W+A+ISGYA+N + DEA
Sbjct: 182 LFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEA 241

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
             +F  M ++++     ++   +                                     
Sbjct: 242 HDLFMKMPTRDIASWNIMITGFI------------------------------------- 264

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
              +  +++RA +LF+ MP R+V+++ +M+ G         A+ +F+ ML EG+ P++V 
Sbjct: 265 ---QDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVT 321

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY------ACMVDLLGRTGHLKSAY 488
           F   + ACS++  + +G       Q V+ ++            + +++L  + G ++ A 
Sbjct: 322 FLGAVDACSNLAGLSEG-------QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLAR 374

Query: 489 ELLNSMPVEPHASAWGALLGA 509
           ++ + +  E    +W  ++ A
Sbjct: 375 KVFD-LSKEKDVISWNGMIAA 394



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 167/317 (52%), Gaps = 28/317 (8%)

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTM 270
           A+ G + +A+ +FD  P+R  VSW AL+    + G L  AR LFD  P+  RNVV++T +
Sbjct: 46  AAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDR-PDARRNVVTWTAL 104

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           + GYA+ G +  A +LF+  P+R+VV+W+ ++  Y   G+  +A  +F  M  ++     
Sbjct: 105 LSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWN 164

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
            +L +L+ +    GN+D +  +   +   ++ ++   ++A +    A+ G++D A  LF+
Sbjct: 165 ILLAALVRS----GNMDKARKLFDRMPERNV-MAWTTMVAGI----ARSGSVDEARALFD 215

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            MP R+VVS+ +MI G + +    +A  LF +M     T D  ++ I++T     G ++D
Sbjct: 216 GMPERNVVSWNAMISGYARNHRIDEAHDLFMKM----PTRDIASWNIMIT-----GFIQD 266

Query: 451 GWRFFEAMQNVYAIVPSPE--HYACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGA 505
             R  E  Q+++  +P      +  M++   ++   ++A ++ N M VE   P+   +  
Sbjct: 267 --RDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLG 324

Query: 506 LLGACKLYSDIELGELV 522
            + AC   + +  G+ V
Sbjct: 325 AVDACSNLAGLSEGQQV 341


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 304/551 (55%), Gaps = 14/551 (2%)

Query: 33  KPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           KP C+  A +L+  C     LH   Q+HSH IK G+  D  L    + L +S    +  +
Sbjct: 359 KPDCITVA-SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL-YSKCADVETA 416

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
              F      N  LWN +L  Y Q     + F IF ++  E  +P+++T+P +++ C+ +
Sbjct: 417 HKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++  G  IH  VI+ G   +V+V + LID+Y K  +++ A ++   +PE +VVSWTAMI
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER--- 262
            GY       EA  +F+ M  R     N+ + + I     I  LR  +Q+  +       
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG 596

Query: 263 -NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            ++     +I  YA+ G +  A   FE   D++ ++W++L+SG AQ+G  +EA+++F  M
Sbjct: 597 ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
                + + F   S +SA + + N+     + S + ++  D  R  V  +L+ + AK G+
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER-EVSNSLISLYAKSGS 715

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A   F  M  R+V+S+ +MI G S HG G +A+ LF+ M   G+ P+ V F  VL+A
Sbjct: 716 ISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSA 775

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH+GLV++G  +FE+M  ++ +VP  EHY C+VDLLGR G L  A E +  MP+   A 
Sbjct: 776 CSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAM 835

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            W  LL AC ++ +IE+GE  A+ L ELEP+++ +YVL+SNIYA + +W+     R  MK
Sbjct: 836 IWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMK 895

Query: 562 ERGLRKIPGCS 572
           +RG++K PG S
Sbjct: 896 DRGVKKEPGRS 906



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 251/527 (47%), Gaps = 32/527 (6%)

Query: 18  SMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS 77
           ++L  C   A   FP P  L S L+   K +L     Q+H  +IK G   +  +    ++
Sbjct: 245 AILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           L +S +  L  +  +F+ + + +   +N+L+ G  Q         +F ++ R+   PD  
Sbjct: 305 L-YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T   ++ AC+ V ++ +G  +H+  I+ G+  D+ +  SL+DLY K  ++  A K F   
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTT 423

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR 253
              N+V W  M+V Y  + +L ++  +F  M       +  ++ +++     +G L    
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGE 483

Query: 254 QLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           Q+   +     + NV   + +ID YAK G +  A  +    P+ DVV+W+A+I+GY Q+ 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV--DSYLSRSHMDLSRAH 367
              EA+++F +M  + +Q D     S +SAC+ +  L     +   SY +    DLS   
Sbjct: 544 MFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS--- 600

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           +  AL+ + A+CG +  A   FE + +++ +S+ S++ GL+  G+  +A+ +F RML   
Sbjct: 601 INNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV------PSPEHYACMVDLLGRT 481
              +   +   ++A + +  ++ G       Q ++++V         E    ++ L  ++
Sbjct: 661 AEVNMFTYGSAISAAASLANIKQG-------QQIHSMVLKTGYDSEREVSNSLISLYAKS 713

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           G +  A+   N M  E +  +W A++     YS    G + A RLFE
Sbjct: 714 GSISDAWREFNDMS-ERNVISWNAMITG---YSQHGCG-MEALRLFE 755



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 199/446 (44%), Gaps = 11/446 (2%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            ++ QVHS     G +    LVA+ +   +S    +  +  VFN I   +   W  ++ G
Sbjct: 177 NYVKQVHSRTFYYGFDSS-PLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISG 235

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            SQN    E   +F  +   E  P  Y    V+ A + +     G  +H  VI+WG   +
Sbjct: 236 LSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            +V   L+ LY + +++  A ++F  M  R+ VS+ ++I G    G    A  +F  M  
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355

Query: 231 R----SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTS 282
                  ++  +L+     +G L    QL     +     +++   +++D Y+K  D+ +
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVET 415

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A   F      ++V W+ ++  Y Q     ++ +IF  M  + + P++F   S++  C+ 
Sbjct: 416 AHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTS 475

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L L   + +++ ++   L+  +V + L+DM AK G +  A  +   +P  DVVS+ +
Sbjct: 476 LGALYLGEQIHTHVIKTGFQLN-VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA 534

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G   H    +A+ LF+ M   G+  D + F   ++AC+ +  +  G +   A     
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYAA 593

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAY 488
                      ++ L  R G ++ AY
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAY 619



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 207/436 (47%), Gaps = 24/436 (5%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC-S 147
           +  VF+   N + F WN ++  +       +VF +F R++ E   P+ YTF  V+KAC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
             ++      +H+    +G D    V   LIDLY K   I  A+KVF+ +  +++V+W A
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 208 MIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           MI G +  G   EA  +F      ++ P    +S  +++    KI       QL   + +
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLS--SVLSASTKIQLFELGEQLHCLVIK 289

Query: 262 RNVVSYTTMIDG----YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
               S T + +G    Y++   + SA  +F     RD V++++LISG  Q G  D A+++
Sbjct: 290 WGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALEL 349

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDM 375
           F+ M    ++PD   + SL+SAC+ VG L     + S+  ++ M    A +I   +L+D+
Sbjct: 350 FTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMS---ADIILEGSLLDL 406

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            +KC +++ A + F T    ++V +  M+       +   +  +F +M  EG+ P++  +
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNS 493
             +L  C+ +G +  G +      +V         Y C  ++D+  + G L  A  +L  
Sbjct: 467 PSILRTCTSLGALYLGEQIH---THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRR 523

Query: 494 MPVEPHASAWGALLGA 509
           +P E    +W A++  
Sbjct: 524 LP-EDDVVSWTAMIAG 538



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 19/342 (5%)

Query: 124 FVRLIREEAVPDKY-TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
            +  + E  V   Y  +  +++ C    S+ E   +H  + + G D +  +  SL+D Y 
Sbjct: 45  LMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYF 104

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
           +  +   A KVFDE   R+V SW  MI  + +     +   +F  M             G
Sbjct: 105 RHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAG 164

Query: 243 LVKI---GDL----------RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           ++K    GD+          R+    FD  P    +    +ID Y+K G + SA+ +F  
Sbjct: 165 VLKACVGGDIAFNYVKQVHSRTFYYGFDSSP----LVANLLIDLYSKNGYIESAKKVFNC 220

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
              +D+V W A+ISG +QNG  +EA+ +F DM +  + P  ++L S++SA +++   +L 
Sbjct: 221 ICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG 280

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             +   + +     S  +V   LV + ++   +  A  +F TM +RD VSY S+I GL  
Sbjct: 281 EQLHCLVIKWGFH-SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            G   +A+ LF +M  + L PD +    +L+AC+ VG +  G
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           +++ + M  + V+ +    + L+  C   G+L  +  +   +S+S  D     +I +LVD
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFD-GEPLLIDSLVD 101

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
              + G+   A ++F+   NR V S+  MI          Q   LF RML+EG+TP+   
Sbjct: 102 NYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYT 161

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           F  VL AC    +  +  +   +    Y    SP     ++DL  + G+++SA ++ N
Sbjct: 162 FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 306/575 (53%), Gaps = 46/575 (8%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           ++++  C       ++H+ +   GL+   SL    +++     + +  +  +F  +   +
Sbjct: 114 VSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS-VGDAKRMFQSLQTRD 172

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
              WN ++  +SQ+  +     IF + ++ +  P+  T+  VI   S    + EG  IHA
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIF-KEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            ++  G D D+ V T+LI++YGK      AR+VFD+M +R++VSW  MI  Y   GD  E
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE 291

Query: 221 AKTVFDLMP----ERSNVSWNALIG---------------------GL------------ 243
           A  ++  +     +R+  ++ +++G                     GL            
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351

Query: 244 --VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG---DMTSARSLFEAAPDRDVVAW 298
              K G L  AR++F+ M  R+ V+++T+I  YA  G   D   AR +F+    RD + W
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICW 411

Query: 299 SALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           +A+I+ Y QNG    A+KIF +M  +  ++PD    ++++ AC+ +G L     + + +S
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS 471

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
            S ++ S   V   L++M A+CG+++ A  LF     + VVS+ +M+   S +G   +A+
Sbjct: 472 ESELE-SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEAL 530

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LF  M  EG+ PD+V +T +L  C+H G +E GWR+F  M  ++ + P+ +H+A MVDL
Sbjct: 531 DLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDL 590

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR+G L  A ELL SMP EP   AW   L AC+++  +ELGE  A R++EL+P +   Y
Sbjct: 591 LGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPY 650

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +SNIYA    W  V  VR KM+ERGL+K+PG S
Sbjct: 651 IAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLS 685



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 239/535 (44%), Gaps = 69/535 (12%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSY 88
           P     L+ L     C        +H  I     E+D  +    IS+   C SL    S 
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
             ++  R    N   WN ++  Y+QN    E   ++ R+  +    D  TF  V+ ACS 
Sbjct: 65  FESMDWR--QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS- 121

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             S+ +G  IH  V   G+D    +  +L+ +Y +   +  A+++F  +  R+  SW A+
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 209 IVGYASVGDLVEAKTVF-----DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--- 260
           I+ ++  GD   A  +F     D+ P  ++ ++  +I G      L   R++  E+    
Sbjct: 180 ILAHSQSGDWSGALRIFKEMKCDMKP--NSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 261 -ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
            + ++V  T +I+ Y K G    AR +F+    RD+V+W+ +I  Y QNG   EA++++ 
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            +  +  +  +   VS++ ACS V  L     V S++    +D S   V  ALV+M AKC
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD-SEVAVATALVNMYAKC 356

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG---RQAVSLFDRMLSE---------- 426
           G+++ A ++F  M NRD V++ ++I   + +G+G   R+A  +FDR+ S           
Sbjct: 357 GSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMIT 416

Query: 427 ----------------------GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
                                 GL PD V F  VL AC+ +G + +       ++ ++A 
Sbjct: 417 TYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-------VKALHAQ 469

Query: 465 VPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           +   E  +       ++++  R G L+ A E L +   E    +W A++ A   Y
Sbjct: 470 ISESELESNVVVTNTLINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMVAAFSQY 523



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 24/191 (12%)

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           QPD    ++++ +CS  G++     +   +  S  +     V  AL+ M  KC ++  A 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERD-TMVGNALISMYGKCDSLVDAR 62

Query: 387 ELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS- 443
            +FE+M    R+VVS+ +MI   + +GH  +A+ L+ RM  +GL  D V F  VL ACS 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 444 -------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
                  H  +   G   F+++ N             +V +  R G +  A  +  S+  
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANA------------LVTMYARFGSVGDAKRMFQSLQT 170

Query: 497 EPHASAWGALL 507
               S W A++
Sbjct: 171 RDETS-WNAVI 180


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 180/493 (36%), Positives = 286/493 (58%), Gaps = 47/493 (9%)

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVL----SVREGTAIHAAVIRWGVDEDVFVGTSLID 179
           + R++     PD YTFP ++KA +       S     A+HA V+R G+  +  V +SL+ 
Sbjct: 7   YARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVA 66

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVS 235
            Y    + + AR +  E      V+W A+I G+   G   E+   F  M       + V+
Sbjct: 67  AYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVT 124

Query: 236 W------------------------------------NALIGGLVKIGDLRSARQLFDEM 259
           +                                    NAL+    +  D+ SA ++FD M
Sbjct: 125 YVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGM 184

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
             R+VVS+T+++ G A++G +  AR LF+  P+RD V+W+A+I GY    +  EA+++F 
Sbjct: 185 QVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFR 244

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           +M   NV  DEF +VS+++AC+Q+G L++  WV  Y+SR  + +  A V  AL+DM +KC
Sbjct: 245 EMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMD-AFVGNALIDMYSKC 303

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G+++RA ++F+ M +RD  ++ ++I GL+++G+  +A+ +F RM+    TPDEV F  VL
Sbjct: 304 GSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVL 363

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           TAC+H GLV+ G  FF +M   Y I P+  HY C++DLLGR G +  A + ++ MP+ P+
Sbjct: 364 TACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPN 423

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           ++ WG LL AC+++ + E+GELVA RL EL+P+N+  Y+LLSNIYA  +RW DV  +R  
Sbjct: 424 STIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHA 483

Query: 560 MKERGLRKIPGCS 572
           + E+G++K PGCS
Sbjct: 484 IMEKGIKKEPGCS 496



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 199/429 (46%), Gaps = 52/429 (12%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT-FLWNTLLKGYSQN 114
           VH+H+++ G+ ++    AH  S   +  T      A    +   +T   WN L+ G+++ 
Sbjct: 45  VHAHVVRLGMGRN----AHVASSLVAAYTAGGDGAAARALVGECDTPVAWNALISGHNRG 100

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH-VLSVREGTAIHAAVIRWGVDEDVFV 173
            RF E    FV + R  A P   T+  V+ AC      V  G  +H  V+  GV  D+ V
Sbjct: 101 GRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRV 160

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
             +L+D+Y +  ++  A KVFD M  R+VVSWT+++ G A +G + EA+ +FD MPER  
Sbjct: 161 ENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDT 220

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNV-------VSYTT----------------- 269
           VSW A+I G V     R A ++F EM   NV       VS  T                 
Sbjct: 221 VSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVY 280

Query: 270 ---------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
                          +ID Y+K G +  A  +F+    RD   W+A+I G A NG  +EA
Sbjct: 281 MSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEA 340

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AAL 372
           +++F  M   +  PDE   + +++AC+  G +D     + +LS         +V+    +
Sbjct: 341 IEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGR--EFFLSMIEAYNIAPNVVHYGCI 398

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +D+  + G +  A +  + MP   +   + +++    +HG+      + +R+L   L P+
Sbjct: 399 IDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLE--LDPE 456

Query: 432 EVAFTIVLT 440
                I+L+
Sbjct: 457 NSMVYILLS 465


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 178/480 (37%), Positives = 275/480 (57%), Gaps = 9/480 (1%)

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F     PN   W T+L G+++N   +E   +F ++     V         ++ C     +
Sbjct: 187 FQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCE----I 242

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
            E + +   +     + D    T++I+ Y +  ++  AR++ +EMP RN+ + TAMI GY
Sbjct: 243 DEASRLFEEM----PERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGY 298

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
                + EA+  FD +     V WNA+I G    G +  A  L   M  +++V++ TMI 
Sbjct: 299 IQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMIS 358

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            YA+VG M  A  +FE   +RD+V+W++LI+G+  NGQ  +A+K F+ M  +  +PD+  
Sbjct: 359 CYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLS 418

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
               +S+C+ +  L + N +   + +    L+   V  AL+ M AKCG +  A  +F  +
Sbjct: 419 FACGLSSCATIAALQVGNQLHQVVVKGGY-LNYLVVNNALITMYAKCGRILEAGLVFNGI 477

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
            + DV+S+ S+I G +I+G+G++A+ LF+ M SEG+ PDEV F  +L+AC+H G+V+ G 
Sbjct: 478 CHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGL 537

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           + F+ M  VYAI P  EHYACMVDLLGR G L  A+E++  M V+  A  WGALLGAC+ 
Sbjct: 538 KLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRA 597

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + ++ELG L A++L E EP    +YVLLSNI+A A+RW +V  VR  M      K PGCS
Sbjct: 598 HGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCS 657



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 207/414 (50%), Gaps = 60/414 (14%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   N   WNT++ GY  N +F E + +FV + R     D +++ L+I   +    
Sbjct: 28  LFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRR----DLFSWTLMITCYTRNGE 83

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           V +   +  + +     + V    ++I  Y K+  ++ A+++FDEMP +N++SW +M+ G
Sbjct: 84  VEKARELFDS-LPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAG 142

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA------------------- 252
           Y     +      F+ M ER  VSWN ++ G +++GDL SA                   
Sbjct: 143 YTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTML 202

Query: 253 ------------RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
                       R+LFD+MP RN+VS+  MI  Y +  ++  A  LFE  P+RD V+W+ 
Sbjct: 203 SGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTT 262

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV----------GNLDLSN 350
           +I+GY + G+ DEA ++ ++M  +N+   +  ++S    C++V          G  D+  
Sbjct: 263 MINGYVRIGKLDEARELLNEMPYRNIGA-QTAMISGYIQCNKVDEARRFFDEIGTWDVVC 321

Query: 351 W---VDSYLSRSHMD----LSRAHVIAALVDMN------AKCGNMDRAAELFETMPNRDV 397
           W   +  Y     ++    LS+  V   +V  N      A+ G MDRA ++FE M  RD+
Sbjct: 322 WNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDL 381

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           VS+ S+I G  ++G    A+  F  M  EG  PD+++F   L++C+ +  ++ G
Sbjct: 382 VSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVG 435



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 163/335 (48%), Gaps = 60/335 (17%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           +++     S+I +Y K   I+ AR +FD+MP RN+VSW  M+ GY   G   EA  +F +
Sbjct: 3   EKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVI 62

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSAR 284
           MP R   SW  +I    + G++  AR+LFD +P    + V  +  MI GY K G +  A+
Sbjct: 63  MPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAK 122

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LF+  P +++++W+++++GY QN +    ++ F++M       DE  +VS         
Sbjct: 123 RLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEM-------DERDVVSW-------- 167

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           NL                         +VD   + G++D A + F+     +VVS+ +M+
Sbjct: 168 NL-------------------------MVDGFIQVGDLDSAWKFFQETQKPNVVSWVTML 202

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G + +G+  ++  LFD+M S  +    V++  +++A      +++  R FE M      
Sbjct: 203 SGFARNGNILESRRLFDQMPSRNI----VSWNAMISAYVQRCEIDEASRLFEEM------ 252

Query: 465 VPSPEH----YACMVDLLGRTGHLKSAYELLNSMP 495
              PE     +  M++   R G L  A ELLN MP
Sbjct: 253 ---PERDSVSWTTMINGYVRIGKLDEARELLNEMP 284



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 52/318 (16%)

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           M E++ V++N++I    K G + +AR LFD+MP RN+VS+ TM+ GY   G    A  LF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
              P RD+ +W+ +I+ Y +NG+ ++A ++F  +                  CS    + 
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSL-----------------PCSYRKGVA 103

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
             N                    A++    K G ++ A  LF+ MP ++++S+ SM+ G 
Sbjct: 104 CWN--------------------AMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGY 143

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           + +   R  +  F+ M       D V++ +++     VG ++  W+FF+  Q      P+
Sbjct: 144 TQNRKMRLGLEFFNEMDER----DVVSWNLMVDGFIQVGDLDSAWKFFQETQK-----PN 194

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
              +  M+    R G++  +  L + MP     S W A++ A     +I+     A+RLF
Sbjct: 195 VVSWVTMLSGFARNGNILESRRLFDQMPSRNIVS-WNAMISAYVQRCEID----EASRLF 249

Query: 528 ELEPQ-NAGSYVLLSNIY 544
           E  P+ ++ S+  + N Y
Sbjct: 250 EEMPERDSVSWTTMINGY 267



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 16/245 (6%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C++    +  +  +F  +   +   WN+L+ G+  N + ++    F  +  E   PD+ +
Sbjct: 359 CYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLS 418

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F   + +C+ + +++ G  +H  V++ G    + V  +LI +Y K   I  A  VF+ + 
Sbjct: 419 FACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGIC 478

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQ 254
             +V+SW ++I GYA  G   EA  +F+ M         V++  ++      G +    +
Sbjct: 479 HADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLK 538

Query: 255 LFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVA----WSALISGY 305
           LF  M +   +      Y  M+D   +VG +  A   FE      V A    W AL+   
Sbjct: 539 LFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEA---FEIVRGMKVKATAGVWGALLGAC 595

Query: 306 AQNGQ 310
             +G 
Sbjct: 596 RAHGN 600



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           +C LS+   I   ++   LHQV    + KG   ++ +V + +   ++    +  +  VFN
Sbjct: 420 ACGLSSCATIAALQVGNQLHQV----VVKGGYLNYLVVNNALITMYAKCGRILEAGLVFN 475

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            I + +   WN+L+ GY+ N    E   +F  +  E   PD+ TF  ++ AC+H   V  
Sbjct: 476 GICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDH 535

Query: 155 GTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS-WTAMIVGY 212
           G  +   + + + ++        ++DL G+   +  A ++   M  +     W A++   
Sbjct: 536 GLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGAC 595

Query: 213 ASVGDL 218
            + G+L
Sbjct: 596 RAHGNL 601


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 299/578 (51%), Gaps = 78/578 (13%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
           LL A    K  ++   LH++ S   +     D  L    I++     +P S S  VF+++
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQ--FCNDFVLNTRIITMYSMCGSP-SDSRMVFDKL 167

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREG 155
              N F WN ++  Y++N  F +  +IF  LI   E  PD +T P VIKAC+ +L +  G
Sbjct: 168 RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 227

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH    +  +  DVFVG +LI +YGK     C                          
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGK-----CG------------------------- 257

Query: 216 GDLVE--AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV--------- 264
             LVE   K VFDLM  ++  SWNAL+ G  +  D R A  L+ +M +  +         
Sbjct: 258 --LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGS 315

Query: 265 ----------VSYTTMIDGYAK--------------------VGDMTSARSLFEAAPDRD 294
                     + Y   I G+A                      G   +A+ LF+    R 
Sbjct: 316 LLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRS 375

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           +V+W+ +I+GY+QNG PDEA+ +F  M S  +QP E  ++ +  ACSQ+  L L   +  
Sbjct: 376 LVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHC 435

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           +  ++H+      V ++++DM AK G +  +  +F+ +  +DV S+  +I G  IHG G+
Sbjct: 436 FALKAHLT-EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 494

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ LF++ML  GL PD+  FT +L ACSH GLVEDG  +F  M N++ I P  EHY C+
Sbjct: 495 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 554

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VD+LGR G +  A  L+  MP +P +  W +LL +C+++ ++ LGE VAN+L ELEP+  
Sbjct: 555 VDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP 614

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +YVL+SN++A + +W DV  VR +MK+ GL+K  GCS
Sbjct: 615 ENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCS 652


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 196/624 (31%), Positives = 323/624 (51%), Gaps = 111/624 (17%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  IIKKGL     L+ + ++  ++    L ++  VF+ +   +TF WNTL+ GY++  
Sbjct: 32  VHCQIIKKGLHLGVYLMNNLMTF-YAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQG 90

Query: 116 RFIEV--------------------------------FTIFVRLIREEAVPDKYTFPLVI 143
            F EV                                  +F ++I E   P ++T   V+
Sbjct: 91  NF-EVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD-------- 195
            +C+   ++  G  IH+ V++ G+   V V TSL+++Y K  +   A+ VFD        
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 196 -----------------------EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM---- 228
                                  +MP+R++VSW +MI GY+  G  +EA  +F  M    
Sbjct: 210 TWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEP 269

Query: 229 ------------------------------------PERSNVSWNALIGGLVKIGDLRSA 252
                                                E S    NALI    K G +  A
Sbjct: 270 SLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIA 329

Query: 253 RQLFD--EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           R + +       N++++T+++DGY K+G++  AR +F    DRDVVAW+A+I GY QNG 
Sbjct: 330 RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGL 389

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            ++A+++F  M ++  +P+ + L +++S  S +  L+    + +   ++  + S   V  
Sbjct: 390 WNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG-ESSTPSVTN 448

Query: 371 ALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
           AL+ M AK GN++ A  +F+ +PN  +++VS+ SMI  L+ HG G++A++LF+RMLS G+
Sbjct: 449 ALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD + +  VL+AC+HVGLVE G +++  M  V+ I P+  HYACM+DL GR G L+ AY
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
             + SMP+EP   AWG+LL +CK++ + +L ++ A RL  ++P N+G+Y+ L+N+Y+   
Sbjct: 568 LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACG 627

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           +W +    R  MK+RG+RK  G S
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGIS 651



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 216/478 (45%), Gaps = 110/478 (23%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G ++H  +I+ G+   V++  +L+  Y K   +  A  VFDEMP ++  SW  +I GYA 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PER---------NV 264
            G+   ++ +   MP+   VSW A+I G  + G   +A  +F +M  ER         NV
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 265 VS-----------------------------YTTMIDGYAKVGDMTSAR----------- 284
           +S                              T++++ YAK GD   A+           
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 285 --------------------SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                               S FE  PDRD+V+W+++ISGY+Q G   EA+ IFS M ++
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 325 -NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA----------------- 366
            +++PD F L S++SAC+ +  L++   + +Y+ R+  + S A                 
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 367 -------------HVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
                        ++IA  +L+D   K GN+  A E+F  + +RDVV++ +MI G   +G
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF-EAMQNVYAIVPSPEH 470
               A+ LF  M++EG  P+      +L+  S + ++E G +    A++   +  PS  +
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
              ++ +  +TG++  A  + +    +    +W +++ A   +    LG+   N LFE
Sbjct: 449 --ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG---LGKEAIN-LFE 500


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 185/526 (35%), Positives = 297/526 (56%), Gaps = 11/526 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H++++++G E D S+V   I   ++    +     +F+++V  N   W T++ GY QN
Sbjct: 251 QIHAYVLRRGTEMDVSVVNVLIDF-YTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 309

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           S   E   +F  + R    PD +    V+ +C    ++ +G  +HA  I+  ++ D FV 
Sbjct: 310 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVK 369

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
             LID+Y K   +  A+KVFD M E+NV+S+ AMI GY+S   L EA  +F  M  R   
Sbjct: 370 NGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFP 429

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSL 286
            S +++ +L+G    +  L  ++Q+   + +  V     + + +ID Y+K   +  AR +
Sbjct: 430 PSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHV 489

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE   ++D+V W+A+  GY Q+ + +EA+K++S +     +P+EF   +L++A S + +L
Sbjct: 490 FEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASL 549

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                  + L +  +D     V  ALVDM AKCG+++ A ++F +   RDVV + SMI  
Sbjct: 550 RHGQQFHNQLVKMGLDFC-PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 608

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + HG   +A+ +F  M+ EG+ P+ V F  VL+ACSH G VEDG   F +M   + I P
Sbjct: 609 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKP 667

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHYAC+V LLGR+G L  A E +  MP+EP A  W +LL AC++  ++ELG+  A   
Sbjct: 668 GTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMA 727

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              +P+++GSY+LLSNI+A+   W DV  VR +M    + K PG S
Sbjct: 728 ISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRS 773



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 238/496 (47%), Gaps = 27/496 (5%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           H   +H  II  GL+ D  L    I++C S +  +  +  VF+++ + N   W++++  Y
Sbjct: 45  HYKIIHGQIIVSGLQSDTFLANILINVC-SKSDRVDNARVVFDKMPHKNLITWSSMVSMY 103

Query: 112 SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           SQ     E   +FV L R+    P+++    VI+AC+ +  V +G  +H  V+R G D+D
Sbjct: 104 SQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQD 163

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF----- 225
           V+VGTSLID Y K   I  AR VFD++ E+  V+WT +I GY   G    +  +F     
Sbjct: 164 VYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRE 223

Query: 226 -DLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDM 280
            +++P+R  VS  +++     +  L   +Q+         E +V     +ID Y K   +
Sbjct: 224 TNVVPDRYVVS--SVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 281

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            + R LF+    +++++W+ +ISGY QN    EA+K+F +M     +PD F   S++++C
Sbjct: 282 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 341

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
                L+    V +Y  +++++ S   V   L+DM AK   +  A ++F+ M  ++V+SY
Sbjct: 342 GSREALEQGRQVHAYTIKANLE-SDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISY 400

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI+G S      +A+ LF  M      P  + F  +L   + +  +E   +    +  
Sbjct: 401 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELS-KQIHGLII 459

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL----------GAC 510
            + +       + ++D+  +  ++K A  +   M  E     W A+            A 
Sbjct: 460 KFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQHLENEEAL 518

Query: 511 KLYSDIELGELVANRL 526
           KLYS ++      N  
Sbjct: 519 KLYSTLQFSRQKPNEF 534



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 216/450 (48%), Gaps = 17/450 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  +++ G +QD  +    I   +S    +  +  VF+++       W T++ GY++ 
Sbjct: 150 QLHGFVVRSGFDQDVYVGTSLIDF-YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 208

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R      +F ++     VPD+Y    V+ ACS +  +  G  IHA V+R G + DV V 
Sbjct: 209 GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 268

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             LID Y K   +   RK+FD+M  +N++SWT MI GY       EA  +F    E + +
Sbjct: 269 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFG---EMNRL 325

Query: 235 SWN----ALIGGLVKIGD---LRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSA 283
            W     A    L   G    L   RQ+     + N+ S       +ID YAK   +  A
Sbjct: 326 GWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDA 385

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F+   +++V++++A+I GY+   +  EA+++F +M  +   P     VSL+   + +
Sbjct: 386 KKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASL 445

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             L+LS  +   + +  + L      +AL+D+ +KC  +  A  +FE M  +D+V + +M
Sbjct: 446 FALELSKQIHGLIIKFGVSLD-LFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAM 504

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
             G + H    +A+ L+  +      P+E  F  ++TA S++  +  G +F   +  +  
Sbjct: 505 FFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKM-G 563

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
           +   P     +VD+  + G ++ A ++ NS
Sbjct: 564 LDFCPFVTNALVDMYAKCGSIEEARKMFNS 593


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 323/623 (51%), Gaps = 109/623 (17%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  IIKKGL     L+ + ++  ++    L ++  VF+ +   +TF WNTL+ GY++  
Sbjct: 32  VHCQIIKKGLHLGVYLMNNLMTF-YAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQG 90

Query: 116 RF---------------------------IEVFT----IFVRLIREEAVPDKYTFPLVIK 144
            F                             +F     +F ++I E   P ++T   V+ 
Sbjct: 91  NFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLS 150

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--------- 195
           +C+   ++  G  IH+ V++ G+   V V TSL+++Y K  +   A+ VFD         
Sbjct: 151 SCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIST 210

Query: 196 ----------------------EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----- 228
                                 +MP+R++VSW +MI GY+  G  +EA  +F  M     
Sbjct: 211 WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPS 270

Query: 229 -----------------------------------PERSNVSWNALIGGLVKIGDLRSAR 253
                                               E S    NALI    K G +  AR
Sbjct: 271 LKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIAR 330

Query: 254 QLFD--EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
            + +       N++++T+++DGY K+G++  AR +F    DRDVVAW+A+I GY QNG  
Sbjct: 331 LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLW 390

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           ++A+++F  M ++  +P+ + L +++S  S +  L+    + +   ++  + S   V  A
Sbjct: 391 NDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG-ESSTPSVTNA 449

Query: 372 LVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
           L+ M AK GN++ A  +F+ +PN  +++VS+ SMI  L+ HG G++A++LF+RMLS G+ 
Sbjct: 450 LIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD + +  VL+AC+HVGLVE G +++  M  V+ I P+  HYACM+DL GR G L+ AY 
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            + SMP+EP   AWG+LL +CK++ + +L ++ A RL  ++P N+G+Y+ L+N+Y+   +
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGK 628

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W +    R  MK+RG+RK  G S
Sbjct: 629 WENAAQTRKLMKDRGVRKEKGIS 651



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 216/478 (45%), Gaps = 110/478 (23%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G ++H  +I+ G+   V++  +L+  Y K   +  A  VFDEMP ++  SW  +I GYA 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PER---------NV 264
            G+   ++ +   MP+   VSW A+I G  + G   +A  +F +M  ER         NV
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 265 VS-----------------------------YTTMIDGYAKVGDMTSAR----------- 284
           +S                              T++++ YAK GD   A+           
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 285 --------------------SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                               S FE  PDRD+V+W+++ISGY+Q G   EA+ IFS M ++
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 325 -NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA----------------- 366
            +++PD F L S++SAC+ +  L++   + +Y+ R+  + S A                 
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 367 -------------HVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
                        ++IA  +L+D   K GN+  A E+F  + +RDVV++ +MI G   +G
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF-EAMQNVYAIVPSPEH 470
               A+ LF  M++EG  P+      +L+  S + ++E G +    A++   +  PS  +
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
              ++ +  +TG++  A  + +    +    +W +++ A   +    LG+   N LFE
Sbjct: 449 --ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG---LGKEAIN-LFE 500


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 161/383 (42%), Positives = 234/383 (61%), Gaps = 1/383 (0%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR  FD MP ++V SW  MI   A VG + EA+ +F  MPE++ VSW+A++ G V  GDL
Sbjct: 123 ARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDL 182

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
            +A + F   P R+V+++T MI GY K G +  A  LF+    R +V W+A+I+GY +NG
Sbjct: 183 DAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENG 242

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           + ++ +++F  M    V+P+   L S++  CS +  L L   V   + +  +  S     
Sbjct: 243 RAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLS-SDTTAG 301

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            +LV M +KCG++  A ELF  +P +DVV + +MI G + HG G++A+ LFD M  EGL 
Sbjct: 302 TSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLK 361

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD + F  VL AC+H GLV+ G ++F  M+  + I   PEHYACMVDLLGR G L  A +
Sbjct: 362 PDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVD 421

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
           L+ SMP +PH + +G LLGAC+++ ++ L E  A  L EL+P  A  YV L+N+YA  +R
Sbjct: 422 LIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNR 481

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W  V  +R  MK+  + KIPG S
Sbjct: 482 WDHVASIRRSMKDNNVVKIPGYS 504



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 160/347 (46%), Gaps = 47/347 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
             Y+  +F +I  PNT  +N +L  +  +    +    F  +     + D  ++  +I A
Sbjct: 89  FEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSM----PLKDVASWNTMISA 144

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + V  + E   + +A+     +++    ++++  Y    ++  A + F   P R+V++W
Sbjct: 145 LAQVGLMGEARRLFSAM----PEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITW 200

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
           TAMI GY   G +  A+ +F  M  R+ V+WNA+I G V+ G      +LF  M E  V 
Sbjct: 201 TAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVK 260

Query: 265 --------------------------------------VSYTTMIDGYAKVGDMTSARSL 286
                                                  + T+++  Y+K GD+  A  L
Sbjct: 261 PNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWEL 320

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F   P +DVV W+A+ISGYAQ+G   +A+++F +M  + ++PD    V+++ AC+  G +
Sbjct: 321 FIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLV 380

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           DL     + + R     ++    A +VD+  + G +  A +L ++MP
Sbjct: 381 DLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMP 427



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 12/315 (3%)

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRSARQ 254
           E    NV++   +I  Y   GD+  A  VF+ M  +S V+WN+++    K  G    ARQ
Sbjct: 35  EFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQ 94

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           LF+++P+ N VSY  M+  +     +  AR  F++ P +DV +W+ +IS  AQ G   EA
Sbjct: 95  LFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEA 154

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
            ++FS M  KN       +VS   AC   G+LD +  V+ + +     +       A++ 
Sbjct: 155 RRLFSAMPEKNCVSWS-AMVSGYVAC---GDLDAA--VECFYAAP---MRSVITWTAMIT 205

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
              K G ++ A  LF+ M  R +V++ +MI G   +G     + LF  ML  G+ P+ ++
Sbjct: 206 GYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALS 265

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
            T VL  CS++  ++ G +  + +     +         +V +  + G LK A+EL   +
Sbjct: 266 LTSVLLGCSNLSALQLGKQVHQLVCKC-PLSSDTTAGTSLVSMYSKCGDLKDAWELFIQI 324

Query: 495 PVEPHASAWGALLGA 509
           P       W A++  
Sbjct: 325 P-RKDVVCWNAMISG 338



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN ++ GY +N R  +   +F  ++     P+  +   V+  CS++ +++ G  +H  V 
Sbjct: 231 WNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVC 290

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           +  +  D   GTSL+ +Y K  ++  A ++F ++P ++VV W AMI GYA  G   +A  
Sbjct: 291 KCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALR 350

Query: 224 VFDLMPERS-NVSWNALI--------GGLVKIGDLRSARQLFDEMP-----ERNVVSYTT 269
           +FD M +      W   +         GLV +G      Q F+ M      E     Y  
Sbjct: 351 LFDEMKKEGLKPDWITFVAVLLACNHAGLVDLG-----VQYFNTMRRDFGIETKPEHYAC 405

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           M+D   + G ++ A  L ++ P                                   +P 
Sbjct: 406 MVDLLGRAGKLSEAVDLIKSMP----------------------------------FKPH 431

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
             I  +L+ AC    NL+L+ +    L    +D + A     L ++ A     D  A + 
Sbjct: 432 PAIYGTLLGACRIHKNLNLAEFAAKNLLE--LDPTIATGYVQLANVYAAQNRWDHVASIR 489

Query: 390 ETMPNRDVV 398
            +M + +VV
Sbjct: 490 RSMKDNNVV 498



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           LS +V S+  +   + +       L+    +CG++D A  +FE M  +  V++ S++   
Sbjct: 23  LSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAF 82

Query: 408 SIH-GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
           +   GH   A  LF+++      P+ V++ I+L    H   V D   FF++M      + 
Sbjct: 83  AKKPGHFEYARQLFEKIPQ----PNTVSYNIMLACHWHHLGVHDARGFFDSMP-----LK 133

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
               +  M+  L + G +  A  L ++MP E +  +W A++       D++
Sbjct: 134 DVASWNTMISALAQVGLMGEARRLFSAMP-EKNCVSWSAMVSGYVACGDLD 183


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 302/531 (56%), Gaps = 18/531 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH H  + GL  D  +    + + ++      ++  VF R+   +   WN +L GY+ + 
Sbjct: 151 VHCHAARAGLHADLFVSTALVDV-YAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHG 209

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED----V 171
           ++ +     + L++++  P+  T   ++   +   ++ +G A+HA  +R     D    V
Sbjct: 210 KYSDTIACLL-LMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGV 268

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPE 230
            VGT+L+D+Y K   +  A +VF+ M  RN V+W+A++ G+   G ++EA ++F D++ +
Sbjct: 269 LVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQ 328

Query: 231 R----SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTS 282
                S  S  + +     + DL   +QL   + +     ++ +  +++  YAK G +  
Sbjct: 329 GLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQ 388

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A +LF+    +D V++SAL+SGY QNG+ DEA ++F  M + NVQPD   +VSL+ ACS 
Sbjct: 389 ATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSH 448

Query: 343 VGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           +  L        S + R     S   +  AL+DM AKCG +D + ++F+ MP RD+VS+ 
Sbjct: 449 LAALQHGKCGHGSVIVRG--IASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWN 506

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           +MI G  IHG G++A +LF  M  +   PD+V F  +++ACSH GLV +G R+F  M + 
Sbjct: 507 TMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHK 566

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y I P  EHY  MVDLL R G L  AY+ +  MP++     WGALLGAC+++ +I+LG+ 
Sbjct: 567 YGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQ 626

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           V++ + +L P+  G++VLLSNI++ A R+ +   VR   KE+G +K PGCS
Sbjct: 627 VSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCS 677



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 222/467 (47%), Gaps = 34/467 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  +F++I  P    +N L++ YS     + +        R    P+ YTFP V+KA
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS +L +R   A+H    R G+  D+FV T+L+D+Y K      A  VF  MP R+VV+W
Sbjct: 139 CSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAW 198

Query: 206 TAMIVGYASVGDLVEAKTVFDLM-----PERSNVSWNALIGGLVKIGDLRSAR------- 253
            AM+ GYA  G   +      LM     P  S +   AL+  L + G L   R       
Sbjct: 199 NAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLV--ALLPLLAQHGALSQGRAVHAYSV 256

Query: 254 ---QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
               L D   +  V+  T ++D YAK G +  A  +FEA   R+ V WSAL+ G+   G+
Sbjct: 257 RACSLHDH--KDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 311 PDEAVKIFSDMCSKN---VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS--HMDLSR 365
             EA  +F DM ++    + P    + S + AC+ + +L L   + + L++S  H DL+ 
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTS--VASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            +   +L+ M AK G +D+A  LF+ M  +D VSY +++ G   +G   +A  +F +M +
Sbjct: 373 GN---SLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQA 429

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
             + PD      ++ ACSH+  ++ G +       V  I         ++D+  + G + 
Sbjct: 430 CNVQPDVATMVSLIPACSHLAALQHG-KCGHGSVIVRGIASETSICNALIDMYAKCGRID 488

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
            + ++ + MP     S W  ++    ++    LG+       +++ Q
Sbjct: 489 LSRQIFDVMPARDIVS-WNTMIAGYGIHG---LGKEATALFLDMKHQ 531



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 20/242 (8%)

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           GD++ AR LF+  P   +  ++ALI  Y+  G         S    +  QP+ +    ++
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 338 SACSQVGNLDLSNWVDSYLSRS--HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
            ACS + +L  +  V  + +R+  H DL    V  ALVD+ AKC +   AA +F  MP R
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADL---FVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           DVV++ +M+ G ++HG     ++    ++ +   P+      +L   +  G +  G    
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAV- 251

Query: 456 EAMQNVYAIVPSPEH--------YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
               + Y++     H           ++D+  + GHL  A  +  +M V    + W AL+
Sbjct: 252 ----HAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT-WSALV 306

Query: 508 GA 509
           G 
Sbjct: 307 GG 308


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 178/458 (38%), Positives = 265/458 (57%), Gaps = 43/458 (9%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPERNVVSWTAMIVGYASV 215
           IH  V+R G+D+  ++ T LI    K         R+V + +  RN   WTA+I GY   
Sbjct: 69  IHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIE 128

Query: 216 GDLVEAKTVFDLM--PERSNVSW------------------------------------- 236
           G   EA  ++  M   E + VS+                                     
Sbjct: 129 GKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVG 188

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N +I   VK G +  AR++FDEMPER+V+S+T +I  YA+VG+M SA  LFE+ P +D+V
Sbjct: 189 NTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMV 248

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           AW+A+++G+AQN +P EA++ F  M    ++ DE  +   +SAC+Q+G    ++      
Sbjct: 249 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 308

Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
            +S    S   VI +AL+DM +KCGN++ A  +F +M N++V SY SMI GL+ HG  ++
Sbjct: 309 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQE 368

Query: 416 AVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           A+ LF  M+++  + P+ V F   LTACSH GLV+ G + F +M   + + P+ +HY CM
Sbjct: 369 ALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCM 428

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G L+ A EL+ +M VEPH   WGALLGAC+++++ ++ E+ A  LFELEP   
Sbjct: 429 VDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDII 488

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G+Y+LLSN+Y++A  W  V  VR  +KE+GL+K P  S
Sbjct: 489 GNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVS 526



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 205/415 (49%), Gaps = 45/415 (10%)

Query: 22  NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           N S  + I+  +   + S ++ +  C     + Q+H H+++KGL+Q   ++   I     
Sbjct: 35  NSSTFSEISHQRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTK 94

Query: 82  LATPLS-YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
           L  P+  Y   V   +   N FLW  +++GY+   +F E   ++  + +EE  P  +TF 
Sbjct: 95  LGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFS 154

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            ++KAC  +  +  G   HA   R      V+VG ++ID+Y K   I CARKVFDEMPER
Sbjct: 155 ALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPER 214

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM- 259
           +V+SWT +I  YA VG++  A  +F+ +P +  V+W A++ G  +    + A + FD M 
Sbjct: 215 DVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME 274

Query: 260 ----------------------------------------PERNVVSYTTMIDGYAKVGD 279
                                                   P  +VV  + +ID Y+K G+
Sbjct: 275 KSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 334

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMS 338
           +  A ++F +  +++V ++S++I G A +G+  EA+ +F  M ++  ++P+    V  ++
Sbjct: 335 VEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALT 394

Query: 339 ACSQVGNLDLSNWVDSYLSRSH-MDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           ACS  G +D    V + + ++  ++ +R H    +VD+  + G +  A EL +TM
Sbjct: 395 ACSHSGLVDQGRQVFASMYQTFGVEPTRDHY-TCMVDLLGRAGRLQEALELIKTM 448



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG-NMD-RAAE 387
           E ++ SL+S      NL+    +  ++ R  +D S  +++  L+    K G  MD     
Sbjct: 47  ELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQS-CYILTKLIRTLTKLGVPMDPYPRR 105

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           + E +  R+   + ++I+G +I G   +A++++  M  E +TP    F+ +L AC  +G 
Sbjct: 106 VIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGD 165

Query: 448 VEDGWRF----FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           +  G +F    F      +  V +      M+D+  + G +  A ++ + MP E    +W
Sbjct: 166 LNLGRQFHAQTFRLRGFCFVYVGN-----TMIDMYVKCGSIVCARKVFDEMP-ERDVISW 219

Query: 504 GALLGACKLYSDIELGELVANRLFELEP 531
             L+ A     ++E     A  LFE  P
Sbjct: 220 TELIAAYARVGNME----SAADLFESLP 243


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 288/541 (53%), Gaps = 67/541 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
            +++K C    +L ++H+ I+  G  Q + ++ H +SL  S  + L  +  VF  I  P+
Sbjct: 31  FSVLKSCVSFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGS-LGSAQKVFEDITAPS 89

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           T +WN ++KG++++    +   +F R+       + +T+  ++ AC      REG  IH 
Sbjct: 90  TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHG 149

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V+  G   +++V T+LI+L                               YA+ GD   
Sbjct: 150 RVLVNGYWSNLYVRTNLINL-------------------------------YANGGD--- 175

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                               GG     DL+ AR LFDEMP+ NVV + +++ GY + GD 
Sbjct: 176 --------------------GGDF---DLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDF 212

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR +F+  P+R+V  W+ +++G+AQNGQ   A+ +F  M    V+ D+  LV+ +SAC
Sbjct: 213 DGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSAC 272

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDV 397
           +++G+L L  W+  Y+ R+        +++   AL+ M A CG MD A ++FE +P R+ 
Sbjct: 273 AELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNT 332

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEG---LTPDEVAFTIVLTACSHVGLVEDGWRF 454
           VS+ S+I G +  G G +A+ +F  ML  G   + PDE+ F   LTACSH GL+ DG R 
Sbjct: 333 VSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRL 392

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           F++M   + ++P  EHY CMVDLL R G L  A  L+ SMP++P+ + WGALL  C+L+ 
Sbjct: 393 FQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHK 452

Query: 515 DIELGELVANRL-FELEPQN--AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           + E+   VA  L FE+ P N  AG ++LL+N+YA   RW D   VR  M + G++K  G 
Sbjct: 453 NDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGR 512

Query: 572 S 572
           S
Sbjct: 513 S 513


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 284/485 (58%), Gaps = 14/485 (2%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P  F +N  L+ ++ ++R      +F+R++R    PD YT P ++ A +         + 
Sbjct: 80  PTAFSYNVTLRFFA-STRPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSA 138

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA + R G+        SL+ +Y    +   AR+VFD +P R+VVSW AM+  Y   G  
Sbjct: 139 HALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMA 198

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLV-----KIGDLRSARQLFD-----EMPERNVVSYT 268
            +   +F  M +   V+ N +   +V       GDL   R L +     E+   ++V  +
Sbjct: 199 ADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVG-S 257

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            ++  Y K G+MT AR +F+    +DVVAW+A+I+GYAQNG   EA+ +F  M  +   P
Sbjct: 258 ALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASP 317

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D+  LV ++SAC+ VG L+L   +D+Y S   +     +V  ALVDM +KCG++D+A ++
Sbjct: 318 DKITLVGVLSACAAVGALELGTELDAYASHRGL-YGNVYVGTALVDMYSKCGDLDKAVQV 376

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGL 447
           F  +P ++  ++ ++I GL+ +G G +A+  F+ M +E GL PD++ F  VL+AC H GL
Sbjct: 377 FGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGL 436

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           ++DG R+F ++ + + I+P  EHY+CMVDLL R GHL+ A++ +  +P +  A   GALL
Sbjct: 437 LKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALL 496

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            AC+   ++E+ E V NR+ +LEP N+ +YV+ S IYA++DR  D   +R  M+ERG+ K
Sbjct: 497 AACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSK 556

Query: 568 IPGCS 572
           IPGCS
Sbjct: 557 IPGCS 561


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 282/488 (57%), Gaps = 33/488 (6%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIK 144
           + ++  +F R+   N   W  ++ G+ +   +   F +F+R+ +E  V  +  T  ++ +
Sbjct: 206 IGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFE 265

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ACS     +EG  +H  V R G + DVF+G                              
Sbjct: 266 ACSEFGEYKEGIQMHGLVSRMGFEFDVFLGN----------------------------- 296

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
             A+I+ Y     +VEA+ +FD+M  +  VSWNALI G V+  ++     LF++  +++V
Sbjct: 297 --AIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDV 354

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +S+TTMI G++  G M  +  LF   P +D +AW+A+ISG+  NG+ +EA+  F +M  K
Sbjct: 355 ISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRK 414

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+P+   L S++SA + +  L+    + + + +  M+   + +  +LV M  KCGN+  
Sbjct: 415 VVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLS-IQNSLVSMYTKCGNVAD 473

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
             ++F ++ + ++VS+ SMI G + +G G +A+ LF +ML+EG  P+E+ F  VL+AC+H
Sbjct: 474 GHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTH 533

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           VGL+E GW +F++M+++Y I P P HYAC+VDLLGR G L  A +L+ SMP EPH+  WG
Sbjct: 534 VGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWG 593

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGA +++  +++ +L A ++F+LEP NA  Y +LS +Y++A R  D   VR     +G
Sbjct: 594 ALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKG 653

Query: 565 LRKIPGCS 572
           ++K  G S
Sbjct: 654 VKKSAGYS 661



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 209/476 (43%), Gaps = 99/476 (20%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP------L 86
           KP+ LL          LQ HL +++S           +    F+  CHS  T       L
Sbjct: 4   KPTTLL----------LQKHLSRLNSS------NTQGNRTTKFLVHCHSQITKHGRNGDL 47

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
             + ++F+R+ + N   W  +L  Y +N    +   +F      E +P + T        
Sbjct: 48  KEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMF------EKMPQRTT-------- 93

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
                     + +A +  +     + +G               A K+F EM ERN +S+ 
Sbjct: 94  ---------ASYNAMITAYTRSNPMMIGE--------------ASKLFAEMRERNSISYA 130

Query: 207 AMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           AMI G A  G +  A+ ++   P   R  V  NALI G +K+G L  A ++F+ M ER+V
Sbjct: 131 AMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDV 190

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +S+++M+DGY K G +  AR LFE  P+R+VV W+A+I G+ + G  +    +F  M  +
Sbjct: 191 ISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKE 250

Query: 325 N-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD--------------------- 362
             V+ +   L  +  ACS+ G       +   +SR   +                     
Sbjct: 251 GFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVE 310

Query: 363 -------LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
                  ++R  V++  AL+    +   ++    LFE    +DV+S+ +MI G S  G  
Sbjct: 311 ARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKM 370

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG-WRFFEAMQNVYAIVPSP 468
            +++ LF RM+ +    D++A+T V++     G  E+  + F E ++ V  + P+P
Sbjct: 371 GKSIELF-RMMPK---QDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKV--VRPNP 420


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/473 (38%), Positives = 263/473 (55%), Gaps = 35/473 (7%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           P  +T   V+KA +    +REG  +H  V + G   D  + T+L+DLY +   +  AR+V
Sbjct: 102 PLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDDARRV 161

Query: 194 FDE-------------------------------MPERNVVSWTAMIVGYASVGDLVEAK 222
           FD                                MPERN  +   M+ GY++ GD+  AK
Sbjct: 162 FDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAK 221

Query: 223 TVFDLMPERSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID-GYAKVGDM 280
            VF++     N V   A+I G  K G +  AR +FD M +R+V ++  MI   YAK G +
Sbjct: 222 HVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLV 281

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR +F+A P+R+VV W+++ISGY Q G+  +AVK+F DM    V+ D+  + +++S+C
Sbjct: 282 EDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSC 341

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
            Q+G LDL  +V +Y    H       V  +L+DM +KCG++ +A E+F  +  RD  S+
Sbjct: 342 GQMGALDLGRYVHAYCD-VHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSW 400

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
             MI G +++G   +A+ LF +M  EG + P+E+ F  VLT+CSH GLVE G+  F  M 
Sbjct: 401 TVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMS 460

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
            VY I P  EHY CMVDLLGR   L  A + +  MP+ P  + W +LL AC+   ++ L 
Sbjct: 461 KVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLA 520

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E VA R+ ELEP   G  VLLSN+YAT  RW+DV  VR+ M    + K PGCS
Sbjct: 521 EYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCS 573



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 182/418 (43%), Gaps = 53/418 (12%)

Query: 17  SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI 76
           + M   C    P+ F   S L +A     + ++     QVH H+ K G + D  +    +
Sbjct: 91  AQMHRGCPGVRPLTFTVSSVLKAA----ARREMLREGEQVHVHVFKNGFQTDERIATTLV 146

Query: 77  SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
            L ++    L  +  VF+R++  +  L+NT++  Y +         +F      E +P++
Sbjct: 147 DL-YARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELF------EVMPER 199

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
            T  L+     +       +A H   +  GV   V   T++I  + K   +  AR VFD 
Sbjct: 200 NTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLC-TAMISGFAKTGSVDDARSVFDG 258

Query: 197 MPERNVVSWTAMI-VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255
           M +R+V +W  MI V YA  G + +A+ VFD MPER+ V W ++I G  ++G  + A +L
Sbjct: 259 MRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKL 318

Query: 256 FDEMP--------------------------ERNVVSY-------------TTMIDGYAK 276
           F +M                            R V +Y              ++ID Y+K
Sbjct: 319 FRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSK 378

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVS 335
            GD+  A  +F     RD  +W+ +I G+A NG   EA+ +F+ M  +  V P+E   + 
Sbjct: 379 CGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLG 438

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           ++++CS  G ++        +S+ +    R      +VD+  +   +  A +  E MP
Sbjct: 439 VLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMP 496



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 35/294 (11%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   N   W +++ GY+Q  +F +   +F  +       D  T   V+ +C  + +
Sbjct: 287 VFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGA 346

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA     G+ + + V  SLID+Y K  +I  A ++F  + +R+  SWT MI+G
Sbjct: 347 LDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMG 406

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALI----------GGLVKIG--DLRSARQLFDEM 259
           +A  G   EA  +F  M E   V  N +           GGLV+ G        +++   
Sbjct: 407 FAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIA 466

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIF 318
           P   +  Y  M+D   +   +  A    E  P   DV  W +L+      G+   A  + 
Sbjct: 467 P--RIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVA 524

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSN-------WVDSYLSRSHMDLSR 365
             +  + ++P         S C   GN+ LSN       WVD    R+ M  SR
Sbjct: 525 ERV--EELEP---------SRCG--GNVLLSNVYATTSRWVDVNKVRTGMGRSR 565


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/515 (36%), Positives = 292/515 (56%), Gaps = 23/515 (4%)

Query: 70  SLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
           + VA  ++  + + + + ++  VF+ + +P+T LWNTLL G S +    E    F R++ 
Sbjct: 149 TFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVC 204

Query: 130 EEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           + +V PD  T   V+ A + V  V  G  +H+   + G+ E   V T LI LY K  ++ 
Sbjct: 205 DGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVE 264

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAKTVFDLMPERSNVSWNALIGG 242
            AR +FD M + ++V++ A+I GY+  G      +L        L P  S +   ALI  
Sbjct: 265 SARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLV--ALIPV 322

Query: 243 LVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
               G    A+ L   + +    +     T +   + ++ DM SAR  F+  P++ + +W
Sbjct: 323 HSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESW 382

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+ISGYAQNG  + AV +F  M   NV+P+   + S +SAC+Q+G L L  W+   ++ 
Sbjct: 383 NAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITE 442

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             ++    +V+ AL+DM AKCG++  A  +F TM N++VVS+ +MI G  +HG G +A+ 
Sbjct: 443 EDLE-PNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           L+  ML   L P    F  VL ACSH GLVE+GW+ F +M + YAI P  EH  CMVDLL
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLL 561

Query: 479 GRTGHLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           GR G LK A+EL++  P   V P    WGALLGAC ++ D +L +L + +LFEL+P+N+G
Sbjct: 562 GRAGQLKEAFELISEFPKSAVGP--GVWGALLGACMVHKDSDLAKLASQKLFELDPENSG 619

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
            YVLLSN++ +  ++ +  +VR + K R L K PG
Sbjct: 620 YYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPG 654



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 216/459 (47%), Gaps = 38/459 (8%)

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
           SL  P  +   +F     P+ FL N LL+            ++  RL+     PD ++F 
Sbjct: 63  SLRAPTGHLLRLFRGFPRPDRFLRNALLRSLP---------SLRPRLLFP--CPDSFSFA 111

Query: 141 LVIKACSHV-------LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
               + + +        S     A+HA  +  G   D FV ++L  LY     +  ARKV
Sbjct: 112 FAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKV 171

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVE--AKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
           FD +P  + V W  ++ G  S  + VE  A+ V D        +  +++    ++ D+  
Sbjct: 172 FDTVPSPDTVLWNTLLAGL-SGSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTM 230

Query: 252 ARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            R +     +  +  +    T +I  Y+K GD+ SAR LF+     D+VA++ALISGY+ 
Sbjct: 231 GRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSV 290

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG    +V +F+++ +  + P+   LV+L+   S  G+  L+  +  ++ +S    + + 
Sbjct: 291 NGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFT-ANSP 349

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  A+  ++ +  +M+ A + F+TMP + + S+ +MI G + +G    AV+LF++M+   
Sbjct: 350 VSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLN 409

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           + P+ +  +  L+AC+ +G +  G ++   +     + P+      ++D+  + G +  A
Sbjct: 410 VRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEA 468

Query: 488 YELLNSMPVEPHASAWGALLG----------ACKLYSDI 516
             + N+M    +  +W A++           A KLY D+
Sbjct: 469 RRIFNTMD-NKNVVSWNAMIAGYGLHGQGAEALKLYKDM 506


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/562 (31%), Positives = 289/562 (51%), Gaps = 47/562 (8%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHS--LATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           Q+H+ +I  GL+Q+  LV+  ++   +  L     + T   N +   +   WN L+  Y 
Sbjct: 102 QLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTL---DPLHWNLLISAYV 158

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           +N  F+E   ++  ++ ++  PD+YT+P V+KAC   L    G  +H ++    ++  +F
Sbjct: 159 RNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLF 218

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER- 231
           V  +L+ +YG+  ++  AR +FD MP R+ VSW  +I  YAS G   EA  +F  M E  
Sbjct: 219 VHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEG 278

Query: 232 ---SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG--------------- 273
              + + WN + GG +  G+ R A QL  +M     +    M+ G               
Sbjct: 279 VEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKE 338

Query: 274 -----------------------YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                                  Y++  D+  A  LF    ++ ++ W+A++SGYA   +
Sbjct: 339 IHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDR 398

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            +E   +F +M  + ++P+   + S++  C+++ NL        Y+ +         +  
Sbjct: 399 YEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWN 458

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           ALVDM ++ G +  A ++F+++  RD V+Y SMI G  + G G   + LF+ M    + P
Sbjct: 459 ALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKP 518

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           D V    VLTACSH GLV  G   F+ M +V+ IVP  EHYACM DL GR G L  A E 
Sbjct: 519 DHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEF 578

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  MP +P ++ W  LLGAC+++ + E+GE  A +L E++P ++G YVL++N+YA A  W
Sbjct: 579 ITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSW 638

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
             +  VR+ M+  G+RK PGC+
Sbjct: 639 RKLAEVRTYMRNLGVRKAPGCA 660



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 189/446 (42%), Gaps = 47/446 (10%)

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL--VIKACSHVLSVREGTAIHAAVIRW 165
           LK +  +      F  F ++    A       P+  ++ AC+H  S+ +G  +HA VI  
Sbjct: 51  LKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISL 110

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G+D++  + + L++ Y     +  A+ V +     + + W  +I  Y   G  VEA  V+
Sbjct: 111 GLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVY 170

Query: 226 DLM----------------------------------PERSNVSW-----NALIGGLVKI 246
             M                                   E S++ W     NAL+    + 
Sbjct: 171 KNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRF 230

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF----EAAPDRDVVAWSALI 302
           G L  AR LFD MP R+ VS+ T+I  YA  G    A  LF    E   + +V+ W+ + 
Sbjct: 231 GKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIA 290

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            G   +G    A+++ S M   ++  D   +V  ++ACS +G + L   +  +  R+  D
Sbjct: 291 GGCLHSGNFRGALQLISQM-RTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFD 349

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
           +   +V  AL+ M ++C ++  A  LF     + ++++ +M+ G +      +   LF  
Sbjct: 350 VFD-NVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFRE 408

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           ML EG+ P+ V    VL  C+ +  ++ G  F   +            +  +VD+  R+G
Sbjct: 409 MLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSG 468

Query: 483 HLKSAYELLNSMPVEPHASAWGALLG 508
            +  A ++ +S+      +    +LG
Sbjct: 469 RVLEARKVFDSLTKRDEVTYTSMILG 494



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 87/207 (42%), Gaps = 6/207 (2%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    + S L L  +     H  + H +I+K    +++ L+ + +   +S +  +  +  
Sbjct: 416 PNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARK 475

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   + +++ GY           +F  + + E  PD  T   V+ ACSH   
Sbjct: 476 VFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGL 535

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V +G  +   +I   G+   +     + DL+G+   ++ A++    MP +   +  A ++
Sbjct: 536 VAQGQVLFKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLL 595

Query: 211 GYASVGDLVE-----AKTVFDLMPERS 232
           G   +    E     A  + ++ P+ S
Sbjct: 596 GACRIHGNTEMGEWAAGKLLEMKPDHS 622


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/537 (33%), Positives = 294/537 (54%), Gaps = 10/537 (1%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           +  C    HL  +H+H I  G   +  + +  + L +   + + Y+  VF+ +   +T L
Sbjct: 118 VAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDL-YCKFSRVVYARKVFDGMPERDTVL 176

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WNT++ G  +N  F +   +F  ++ +    D  T   V+ A + +  ++ G  I    +
Sbjct: 177 WNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLAL 236

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY-ASVGDLVEAK 222
           + G     +V T LI LY K  +++ AR +F  +   +++++ AMI G+ A+ G     K
Sbjct: 237 KIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVK 296

Query: 223 TVFDLMPERSNVSWNALIGGL---VKIGDLRSARQLFDEMPERNVVSYTTMIDG----YA 275
              +L+     VS + ++G +      G L  A  +     +  ++   T+       Y 
Sbjct: 297 LFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN 356

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K+ ++  AR LF+ +P++ VVAW+A+ISGY QNG  + A+ +F +M      P+   + +
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++SAC+Q+G+L    WV   +   +++    +V  ALVDM AKCGN+  A +LF++M  +
Sbjct: 417 ILSACAQLGSLSFGKWVHHLIKSENLE-PNIYVSTALVDMYAKCGNISEAWQLFDSMSEK 475

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           + V++ +MI G  +HG+G +A+ L++ ML  G  P  V F  VL ACSH GLV +G   F
Sbjct: 476 NTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIF 535

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
             M N Y I P  EHYACMVD+LGR+G L+ A E +  MPVEP  + WG LLGAC ++ D
Sbjct: 536 HNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKD 595

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++  L + RLFEL+P + G YVLLSNIY+    +     +R  +K+R L K PGC+
Sbjct: 596 TDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCT 652



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 246/524 (46%), Gaps = 37/524 (7%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA--TPLSYSTAVFNRIVN 98
            +LI K     HL Q H+  I  G   D   +A    L   L   +   ++ A+F  +  
Sbjct: 16  FSLINKASTFPHLAQTHAQFILNGYRFD---LATLTKLTQKLFDFSATRHARALFFSVPK 72

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTA 157
           P+ FL+N L++G+S N       +++  L R   + PD +T+   + ACS   + +    
Sbjct: 73  PDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS---NDKHLML 129

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY----- 212
           +HA  I  G   +VFVG++L+DLY K   +  ARKVFD MPER+ V W  MI G      
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189

Query: 213 -----------ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
                       + G  V++ TV  ++P  + +     +G  ++   L+      D +  
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQ-ELKVGMGIQCLALKIGFGFCDYV-- 246

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
                 T +I  Y+K GD+ +AR LF      D++A++A+ISG+  NG  + +VK+F ++
Sbjct: 247 -----LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFREL 301

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
                +     +V L+   S  G+L L+  +  +  +S + L+   V  A   +  K   
Sbjct: 302 LFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT-VSTAFTAIYNKLNE 360

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +D A  LF+  P + VV++ +MI G + +G    A+SLF  M+    TP+ V  T +L+A
Sbjct: 361 IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSA 420

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+ +G +  G ++   +     + P+      +VD+  + G++  A++L +SM  E +  
Sbjct: 421 CAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTV 478

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            W  ++    L+        + N +  L   N  +   LS +YA
Sbjct: 479 TWNTMIFGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYA 521


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 293/531 (55%), Gaps = 49/531 (9%)

Query: 86  LSYSTAVFNRIV-NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
           L  +  +FN    NPN F++NTL+  +S   + IE F ++  L+     PDK T   +++
Sbjct: 16  LDLAITLFNHFTPNPNLFIYNTLISAFSSLKK-IESFYLYNVLLSSGECPDKQTLLYLLQ 74

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A + +  V++   IH   I  G+    ++  +LI +Y +   +  A +VF++MP  ++VS
Sbjct: 75  AVNFISQVKQ---IHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVS 131

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNV--------------------SW-- 236
           +  MIVGYA  G  +EA  +F  M      P+   +                     W  
Sbjct: 132 FNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWME 191

Query: 237 -------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
                        NAL+   VK   +  A + F  + E+++VS+  ++ G AKVG++  A
Sbjct: 192 RRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQA 251

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R  F   P RD+V+W++L++GYA  G      ++  DM  + V PD   ++SL+SA ++ 
Sbjct: 252 RLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATES 311

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           G LD   W   ++ R  + L  A + +AL+DM  KCG+++RA+ +F+ +  +DV  + +M
Sbjct: 312 GALDQGRWAHGWVIRMQIKLD-AFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTM 370

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I GL+ HG+G +A+ LF  M  E ++PD+V F  VL+ACSH GLV+ G + F +M + Y 
Sbjct: 371 ITGLAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YG 428

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P  EHY C+VDLL R+G L  A ++++ MP++P  S WGA+L AC+   D+EL E+ +
Sbjct: 429 IEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIAS 488

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             L  L+P+  G Y LLSNIYA + RW     +R  M+ RG++K  GCSS+
Sbjct: 489 RELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSV 539


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 175/485 (36%), Positives = 278/485 (57%), Gaps = 7/485 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVL 150
           VF+R+   +T LWNT++ GY +N  ++E   +F  LI E     D  T   ++ A + + 
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +R G  IH+   + G     +V T  I LY K  +I     +F E  + ++V++ AMI 
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295

Query: 211 GYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-- 267
           GY S G+   + ++F +LM   + +  + L+  +   G L     +     + N +S+  
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHAS 355

Query: 268 --TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             T +   Y+K+ ++ SAR LF+ +P++ + +W+A+ISGY QNG  ++A+ +F +M    
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
             P+   +  ++SAC+Q+G L L  WV   L RS    S  +V  AL+ M AKCG++  A
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEA 474

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             LF+ M  ++ V++ +MI G  +HG G++A+++F  ML+ G+TP  V F  VL ACSH 
Sbjct: 475 RRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHA 534

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV++G   F +M + Y   PS +HYACMVD+LGR GHL+ A + + +M +EP +S W  
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWET 594

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC+++ D  L   V+ +LFEL+P N G +VLLSNI++    +     VR   K+R L
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654

Query: 566 RKIPG 570
            K PG
Sbjct: 655 AKAPG 659



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 235/506 (46%), Gaps = 34/506 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L   K+    +HL Q H+ II  G   D SL+         L   + Y+  +F  +  P+
Sbjct: 24  LDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGA-IYYARDIFLSVQRPD 82

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
            FL+N L++G+S N       ++F  L +   + P+  T+   I A S     R G  IH
Sbjct: 83  VFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIH 142

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
              +  G D ++ +G++++ +Y K   +  ARKVFD MPE++ + W  MI GY      V
Sbjct: 143 GQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYV 202

Query: 220 EAKTVF-DLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG- 273
           E+  VF DL+ E        +   ++  + ++ +LR   Q+     +    S+  ++ G 
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262

Query: 274 ---YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
              Y+K G +    +LF      D+VA++A+I GY  NG+ + ++ +F ++     +   
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             LVSL+      G+L L   +  Y  +S+  LS A V  AL  + +K   ++ A +LF+
Sbjct: 323 STLVSLVPVS---GHLMLIYAIHGYCLKSNF-LSHASVSTALTTVYSKLNEIESARKLFD 378

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
             P + + S+ +MI G + +G    A+SLF  M     +P+ V  T +L+AC+ +G +  
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438

Query: 451 G-WRFFEAMQNVYAIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           G W        V+ +V S +  +       ++ +  + G +  A  L + M  + +   W
Sbjct: 439 GKW--------VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTW 489

Query: 504 GALLGACKLYSDIELGELVANRLFEL 529
             ++    L+     G+   N  +E+
Sbjct: 490 NTMISGYGLHGQ---GQEALNIFYEM 512



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 23/269 (8%)

Query: 38  LSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           L + TL+    +  HL   + +H + +K      H+ V+  ++  +S    +  +  +F+
Sbjct: 320 LRSSTLVSLVPVSGHLMLIYAIHGYCLKSNF-LSHASVSTALTTVYSKLNEIESARKLFD 378

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
                +   WN ++ GY+QN    +  ++F  + + E  P+  T   ++ AC+ + ++  
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H  V     +  ++V T+LI +Y K   I+ AR++FD M ++N V+W  MI GY  
Sbjct: 439 GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGL 498

Query: 215 VGDLVEAKTVFDLMPER----SNVSWNALI-----GGLVKIGDLRSARQLFDEMPER--- 262
            G   EA  +F  M       + V++  ++      GLVK GD     ++F+ M  R   
Sbjct: 499 HGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGD-----EIFNSMIHRYGF 553

Query: 263 --NVVSYTTMIDGYAKVGDMTSARSLFEA 289
             +V  Y  M+D   + G +  A    EA
Sbjct: 554 EPSVKHYACMVDILGRAGHLQRALQFIEA 582


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 297/536 (55%), Gaps = 61/536 (11%)

Query: 41  LTLIKK-CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LT+++  C    H HQ++ HIIK GL  +       ++ C S +  ++Y+  +F R+ NP
Sbjct: 31  LTMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNP 90

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N + WNT+++ +S++S      ++FV ++  +  P   T+P V KA + +     G  +H
Sbjct: 91  NLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLH 150

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             V++ G+  D F+  ++                               I  YA+ G + 
Sbjct: 151 GRVVKLGLQNDQFICNTI-------------------------------IYMYANGGLMS 179

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           EA+ VFD                          ++L  E+ + +VV+  +MI GYAK G+
Sbjct: 180 EARRVFD-------------------------GKKL--ELYDHDVVAINSMIMGYAKCGE 212

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  +R+LF+    R  V+W+++ISGY +NG+  EA+++F+ M  +  +  EF +VSL++A
Sbjct: 213 IDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNA 272

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G L    WV  Y+ R+H +L+   V+ A++DM  KCG+++ A E+FET P R +  
Sbjct: 273 CAHLGALQHGKWVHDYIKRNHFELNVI-VVTAIIDMYCKCGSVENAVEVFETCPRRGLSC 331

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           + S+I GL+++GH R+A   F ++ S  L  PD V+F  VLTAC H+G +     +FE M
Sbjct: 332 WNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELM 391

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
            N Y I PS +HY C+VD+LG+ G L+ A EL+  MP++P A  WG+LL +C+ + ++++
Sbjct: 392 MNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQI 451

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
               A R++EL P +A  YVL+SN++A ++++ +    R  MKE    K PGCSS+
Sbjct: 452 ARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSI 507


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 278/492 (56%), Gaps = 30/492 (6%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           ++ +F+++ + +   WN+++ GY  N        I+ +++      D  T   V+  C++
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             ++  G A+H+  I+   +  +    +L+D+Y K  ++  A +VF++M ERNVVSWT+M
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 209 IVGYASVGDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           I GY   G    A  +   M +       V+  +++    + G L + + + D +   N+
Sbjct: 324 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 265 VSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            S       ++D YAK G M  A S+F     +D+++W+ ++                  
Sbjct: 384 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------------- 426

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
                ++PD   +  ++ AC+ +  L+    +  Y+ R+     R HV  ALVD+  KCG
Sbjct: 427 ----ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR-HVANALVDLYVKCG 481

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  A  LF+ +P++D+VS+  MI G  +HG+G +A++ F+ M   G+ PDEV+F  +L 
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH GL+E GWRFF  M+N + I P  EHYACMVDLL RTG+L  AY+ + ++P+ P A
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDA 601

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           + WGALL  C++Y DIEL E VA R+FELEP+N G YVLL+NIYA A++  +V  +R K+
Sbjct: 602 TIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKI 661

Query: 561 KERGLRKIPGCS 572
            ++GLRK PGCS
Sbjct: 662 GKKGLRKNPGCS 673



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 191/433 (44%), Gaps = 87/433 (20%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  V++ C+ + S+ +G  +H+ +    V  D  +G  L+  Y    ++   R+VFD M
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 198 PERNVVSWTAMIVGYASVGDLVE--------------------AKTVFDLMPERSNVSWN 237
            ++NV  W  M+  YA +GD  E                    A  +FD + +R  +SWN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 238 ALIGGLVKIGDLRSARQLFDEMP------------------------------------- 260
           ++I G V  G       ++ +M                                      
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 261 --ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             ER +    T++D Y+K GD+  A  +FE   +R+VV+W+++I+GY ++G  D A+ + 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M  + V+ D   + S++ AC++ G+LD    V  Y+  ++M  S   V  AL+DM AK
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM-ASNLFVCNALMDMYAK 399

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG+M+ A  +F TM  +D++S+ +M+  L                      PD      +
Sbjct: 400 CGSMEGANSVFSTMVVKDIISWNTMVGELK---------------------PDSRTMACI 438

Query: 439 LTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPV 496
           L AC+ +  +E G       ++N Y+   S  H A  +VDL  + G L  A  L + +P 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYS---SDRHVANALVDLYVKCGVLGLARLLFDMIPS 495

Query: 497 EPHASAWGALLGA 509
           +   S W  ++  
Sbjct: 496 KDLVS-WTVMIAG 507


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/380 (42%), Positives = 245/380 (64%), Gaps = 1/380 (0%)

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           +F EMP+RNVVS+T M+ G A  G++  A+ VFD MPER+ VSW A+I G V+      A
Sbjct: 123 LFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEA 182

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           R+LF+ MP++NVV+ T MI GY K GD+ SAR LF+  P +DV++W+A+I+GY  NG  +
Sbjct: 183 RKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGE 242

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+K+   M  + V+PD   L+++++ACS +  L       +  +++ ++ S      AL
Sbjct: 243 EAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLE-SSTSFCNAL 301

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           + M +KCGN+  +  +F  +  +D+VS+ ++I   + HG  ++A++LF  M + GL P++
Sbjct: 302 MTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPND 361

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           +    +L+AC HVG V D    F+ M + YAI PS EHYAC+VD+LGR G L+ A   + 
Sbjct: 362 ITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIK 421

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
            MP E   + WGALLGA K + +++LGEL A  L + +  ++G YV+LSNIYA A  W +
Sbjct: 422 KMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGE 481

Query: 553 VCLVRSKMKERGLRKIPGCS 572
           V  VR +MKE+G++K PG S
Sbjct: 482 VNRVRGQMKEKGVKKQPGYS 501



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/275 (37%), Positives = 155/275 (56%), Gaps = 40/275 (14%)

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           L  L+   +++  AR++FD+MP RNV+SW +++ G  + GDL  A   F   P R+  SW
Sbjct: 45  LTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASW 104

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA++ GLV++G +  A  LF EMP+RNVVSYTTM+DG A+ G++  AR +F+A P+R++V
Sbjct: 105 NAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLV 164

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+A+I+GY +N   DEA K+F  M  KNV            AC+               
Sbjct: 165 SWAAMITGYVENAMFDEARKLFEAMPDKNV-----------VACT--------------- 198

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
                         A++    K G+++ A  LF+ +P +DV+S+ +MI G   +GHG +A
Sbjct: 199 --------------AMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEA 244

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + L   M  EG+ PD      +LTACS + L+  G
Sbjct: 245 MKLHIIMFREGVKPDHATLIAILTACSALALLRQG 279



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 153/334 (45%), Gaps = 53/334 (15%)

Query: 72  VAHFISLCHSLAT--PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129
           V  + ++   LA    ++ +  VF+ +   N   W  ++ GY +N+ F E   +F     
Sbjct: 132 VVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLF----- 186

Query: 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC 189
            EA+PDK                                 +V   T++I  Y K  ++  
Sbjct: 187 -EAMPDK---------------------------------NVVACTAMITGYCKDGDVES 212

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGL 243
           AR++FD +P ++V+SW AMI GY   G   EA  +  +M      P+ + +   A++   
Sbjct: 213 ARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLI--AILTAC 270

Query: 244 VKIGDLRSARQLF----DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
             +  LR  R         M E +      ++  Y+K G++  +  +F     +D+V+W+
Sbjct: 271 SALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWN 330

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            +I+ YAQ+G+  +A+ +F +M ++ + P++  ++S++SAC  VG ++ S  +   +S  
Sbjct: 331 TIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSK 390

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +     A   A +VD+  + G +++A    + MP
Sbjct: 391 YAISPSAEHYACVVDILGRAGQLEKACSYIKKMP 424



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 129/254 (50%), Gaps = 28/254 (11%)

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP-DEAVKI 317
           +  R +V     I   A+ GD+ +AR +F+A P RDVV+W+AL++   + G+    A ++
Sbjct: 2   LATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRL 61

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD--LSRAHVIAALVDM 375
           F DM S+NV        S+++ C   G+LD ++   +Y +R+      S   ++A LV  
Sbjct: 62  FDDMPSRNV----ISWNSVVAGCLAHGDLDAAS---AYFARAPRRNVASWNAMLAGLV-- 112

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
             + G MD A  LF  MP R+VVSY +M+ GL+  G   +A  +FD M    L    V++
Sbjct: 113 --RLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNL----VSW 166

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSAYELLNS 493
             ++T      + ++  + FEAM       P     AC   + G  + G ++SA  L + 
Sbjct: 167 AAMITGYVENAMFDEARKLFEAM-------PDKNVVACTAMITGYCKDGDVESARRLFDG 219

Query: 494 MPVEPHASAWGALL 507
           +PV+   S W A++
Sbjct: 220 IPVKDVIS-WNAMI 232



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 14/231 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ I   +   WN ++ GY  N    E   + + + RE   PD  T   ++ ACS +  
Sbjct: 216 LFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALAL 275

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +R+G + HA   +  ++       +L+ +Y K   +  +  VF  +  +++VSW  +I  
Sbjct: 276 LRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAA 335

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           YA  G   +A  +F  M  R    ++++  +++     +G +  + +LFD M  +  +S 
Sbjct: 336 YAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISP 395

Query: 267 ----YTTMIDGYAKVGDMTSARSLFEAAP---DRDVVAWSALISGYAQNGQ 310
               Y  ++D   + G +  A S  +  P   +R+V  W AL+     +G 
Sbjct: 396 SAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNV--WGALLGASKTHGN 444



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 88/208 (42%), Gaps = 7/208 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L++ LT      L       H+   K  LE   S     +++ +S    +  S  
Sbjct: 258 PDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTM-YSKCGNVGESEL 316

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   +   WNT++  Y+Q+ ++ +   +F  +     +P+  T   ++ AC HV  
Sbjct: 317 VFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGR 376

Query: 152 VREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP---ERNVVSWTA 207
           V +   +   +  ++ +         ++D+ G+  ++  A     +MP   ERNV  W A
Sbjct: 377 VNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNV--WGA 434

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVS 235
           ++    + G++   +    ++ +  +VS
Sbjct: 435 LLGASKTHGNVQLGELAAKMLVQSDSVS 462


>gi|218186878|gb|EEC69305.1| hypothetical protein OsI_38371 [Oryza sativa Indica Group]
          Length = 560

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/522 (35%), Positives = 296/522 (56%), Gaps = 50/522 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGY- 111
           Q+H+H++ +GL          ++L  S ++P  ++ AVF+ +   + N +LW   +  Y 
Sbjct: 29  QLHAHLLIRGLPLPARAA---VALVASSSSP-RHARAVFDSVPAASANVYLWTATISAYA 84

Query: 112 ----SQNSRFIEV----FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
               S +S  +EV      +F  ++     P+ +T   VIK CS V +V EG  +HA + 
Sbjct: 85  RHTSSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLA 144

Query: 164 RWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           + G+    V VG +L+DLYG                               ++G + +A+
Sbjct: 145 KAGLGCSSVHVGAALLDLYG-------------------------------NIGLVGDAR 173

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
            VFD MP ++ V  N ++   V+ GD+ +AR++FD M ER+ +S+ T++ GY  +GD  +
Sbjct: 174 RVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTAT 233

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            R LF+    R+V +W+ +I+  ++ G   + VK+F+ M +   +PD   +  LMSAC+Q
Sbjct: 234 VRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQ 293

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF-ETMPNRDVVSYC 401
           +G+L ++  V   L +S ++++  HV  +L+DM AKCG + +A  LF ET P +D VSY 
Sbjct: 294 LGSLTIAGQVHGLLQKSCVEMN-CHVQNSLIDMYAKCGCISQAQFLFTETYP-KDTVSYN 351

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            MI   + HGH R A+ LF+ M+  GL PD V F  VL+AC+H GLVE G  +FE M+  
Sbjct: 352 VMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTT 411

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           YA+  SP+HYAC+VDL GR G ++ A+  + +MPV+PHA  WGALL AC+ +  +++GE+
Sbjct: 412 YAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEI 471

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            A  L  +EP+N G+YVLL N  A   +W  V  V+  M+ +
Sbjct: 472 AAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRK 513


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 292/506 (57%), Gaps = 23/506 (4%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ----NSRFIEVFTIFVRLIREEAVPDKYT 138
           AT   Y+  +  +I  P+  LW++L+  +S     N R    F  + ++ R   VP ++T
Sbjct: 49  ATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRL--SFLSYRQMRRNGVVPSRHT 106

Query: 139 FPLVIKACSHVLSVREGT--AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
           FP ++KA   V  +R+      HA ++++G D D+FV  SLI  Y          +VFD 
Sbjct: 107 FPPLLKA---VFKLRDANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDG 163

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRS 251
             +++VVSWTAMI G+      +EA T F  M +RS V+ N     +++    K  D+R 
Sbjct: 164 TEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEM-KRSGVAANEMTVVSVLKATRKAEDVRF 222

Query: 252 ARQLFDEMPER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
            R +     E      +V   ++++D Y K G    A+ +F+  P R+VV W+ALI+GY 
Sbjct: 223 GRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYV 282

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           Q    ++ + +F +M   +V P+E  L S++SAC+ VG L     V  Y+ ++ ++++  
Sbjct: 283 QGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTT 342

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            V   L+D  AKCG ++ A  +FE +  ++V ++ +MI G + HG+   AV LF  MLS 
Sbjct: 343 -VGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSS 401

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
            ++P+EV F +VL+AC+H GLVE+G R F +M+  + + P  +HYACMVDL GR G L+ 
Sbjct: 402 HVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEE 461

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A  L+  MP+EP  + WGAL G+C ++ D ELG+  A+R+ +L+P ++G Y LL+N+Y+ 
Sbjct: 462 AKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSE 521

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  W DV  VR +MK++ + K PGCS
Sbjct: 522 SQNWDDVARVRKQMKDQQVVKSPGCS 547


>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 1 [Cucumis sativus]
 gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 2 [Cucumis sativus]
          Length = 517

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/500 (37%), Positives = 284/500 (56%), Gaps = 17/500 (3%)

Query: 87  SYSTAVFNRI-----VNPNTFLWNTLLKGYSQNSRFIE-VFTIFVRLIREEAVPDKYTFP 140
           S S A F +I      NP   ++N LL G   NS F E    ++ +++R  +  + +TF 
Sbjct: 9   SISIAQFTQIHAKLLTNPKPHIFNPLL-GSLVNSIFPENGLFLYNQMLRYPSSHNHFTFT 67

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
             +KAC  +   ++G  IHA +I+ G   D+F+  SL+  Y    ++S A  +FD +P+ 
Sbjct: 68  YALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDP 127

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ------ 254
           +VVSWT++I G + +G   EA + F  M  R N +   L+  L     LR  +       
Sbjct: 128 DVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNST--TLVTALSACSSLRCLKLGKAIHG 185

Query: 255 -LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
                + E NV+    ++D Y +   + SA +LFE  P RDVV+W+ +I GYAQ+G  +E
Sbjct: 186 LRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEE 245

Query: 314 AVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           AV++F +M       P+E  LV+++SACS +  L L  WV SY++  H  +   +V  AL
Sbjct: 246 AVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNAL 305

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           ++M  KCGNM+ A  +F+ + ++D+VS+ ++I GL+++G G+QA  LF  ML  G++PD+
Sbjct: 306 INMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDD 365

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           + F  +L+ACSH GL+  G   FEAM++VY I P   HYACMVD+ G+ G L  A   + 
Sbjct: 366 ITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIK 425

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
            MP+E     WGALL AC+L+ + +  E V   L   +    G++ LLSN YA  DRW D
Sbjct: 426 EMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYACCDRWND 485

Query: 553 VCLVRSKMKERGLRKIPGCS 572
              VR  M+ RGL+K+ G S
Sbjct: 486 ANDVRVAMRSRGLKKMAGRS 505


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 282/488 (57%), Gaps = 33/488 (6%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIK 144
           + ++  +F R+   N   W  ++ G+ +   +   F +F+R+ +E  V  +  T  ++ +
Sbjct: 285 IGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFE 344

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ACS     +EG  +H  V R G + DVF+G                              
Sbjct: 345 ACSEFGEYKEGIQMHGLVSRMGFEFDVFLGN----------------------------- 375

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
             A+I+ Y     +VEA+ +FD+M  +  VSWNALI G V+  ++     LF++  +++V
Sbjct: 376 --AIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDV 433

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +S+TTMI G++  G M  +  LF   P +D +AW+A+ISG+  NG+ +EA+  F +M  K
Sbjct: 434 ISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRK 493

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+P+   L S++SA + +  L+    + + + +  M+   + +  +LV M  KCGN+  
Sbjct: 494 VVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLS-IQNSLVSMYTKCGNVAD 552

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
             ++F ++ + ++VS+ SMI G + +G G +A+ LF +ML+EG  P+E+ F  VL+AC+H
Sbjct: 553 GHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTH 612

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           VGL+E GW +F++M+++Y I P P HYAC+VDLLGR G L  A +L+ SMP EPH+  WG
Sbjct: 613 VGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWG 672

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGA +++  +++ +L A ++F+LEP NA  Y +LS +Y++A R  D   VR     +G
Sbjct: 673 ALLGASRIHLRLDVAKLAAQQIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKG 732

Query: 565 LRKIPGCS 572
           ++K  G S
Sbjct: 733 VKKSAGYS 740



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 212/480 (44%), Gaps = 92/480 (19%)

Query: 32  PKPSCLLSALTLIKK---CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--- 85
           PK   ++  L ++ K     LQ HL +++S           +    F+  CHS  T    
Sbjct: 69  PKYYMIVELLAMLAKPTTLLLQKHLSRLNSS------NTQGNRTTKFLVHCHSQITKHGR 122

Query: 86  ---LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
              L  + ++F+R+ + N   W  +L  Y +N    +   +F      E +P + T    
Sbjct: 123 NGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMF------EKMPQRTT---- 172

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                         + +A +  +     + +G               A K+F EM ERN 
Sbjct: 173 -------------ASYNAMITAYTRSNPMMIGE--------------ASKLFAEMRERNS 205

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           +S+ AMI G A  G +  A+ ++   P   R  V  NALI G +K+G L  A ++F+ M 
Sbjct: 206 ISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMG 265

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           ER+V+S+++M+DGY K G +  AR LFE  P+R+VV W+A+I G+ + G  +    +F  
Sbjct: 266 ERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLR 325

Query: 321 MCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD----------------- 362
           M  +  V+ +   L  +  ACS+ G       +   +SR   +                 
Sbjct: 326 MRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFS 385

Query: 363 -----------LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
                      ++R  V++  AL+    +   ++    LFE    +DV+S+ +MI G S 
Sbjct: 386 FVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSN 445

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG-WRFFEAMQNVYAIVPSP 468
            G   +++ LF RM+ +    D++A+T V++     G  E+  + F E ++ V  + P+P
Sbjct: 446 KGKMGKSIELF-RMMPK---QDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKV--VRPNP 499


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 300/527 (56%), Gaps = 14/527 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS--TAVFNRIVNPNTFLWNTLLKGYSQ 113
           VHSHI+  G E D   +A   +L    A   SY     VF ++VN +   WNT++ G ++
Sbjct: 367 VHSHILNAGHESD---LAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
              + E   I+ ++ RE  +P+K T+ +++ AC +  ++  G  IH+ V++ G   D+ V
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-- 231
             +LI +Y +   I  AR +F++M  ++++SWTAMI G A  G   EA  VF  M +   
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 232 --SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARS 285
             + V++ +++        L   R++  ++ E  + +      T+++ Y+  G +  AR 
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F+    RD+VA++A+I GYA +    EA+K+F  +  + ++PD+   +++++AC+  G+
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L+ +  + S + +    LS   +  ALV   AKCG+   A  +F+ M  R+V+S+ ++I 
Sbjct: 664 LEWAKEIHSLVLKDGY-LSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIG 722

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G + HG G+  + LF+RM  EG+ PD V F  +L+ACSH GL+E+G R+F +M   + I 
Sbjct: 723 GCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGIT 782

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+ EHY CMVDLLGR G L     L+ +MP + +   WGALLGAC+++ ++ + E  A  
Sbjct: 783 PTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES 842

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +L+P NA  YV LS++YA A  W     +R  M++RG+ K PG S
Sbjct: 843 SLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRS 889



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 249/489 (50%), Gaps = 27/489 (5%)

Query: 39  SALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           + + L+  CK  + L    ++H   +K  L  D + VA+ I   ++    +  +  VF++
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVN-VANCILNMYAKCGSIHEAREVFDK 304

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           +   +   W  ++ GY+        F IF ++ +E  VP++ T+  V+ A S   +++ G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             +H+ ++  G + D+ VGT+L+ +Y K       R+VF+++  R++++W  MI G A  
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 216 GDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSY 267
           G+  EA  ++  M       + +++  L+   V    L   R++   + +     ++   
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
             +I  YA+ G +  AR LF     +D+++W+A+I G A++G   EA+ +F DM    ++
Sbjct: 485 NALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLK 544

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           P+     S+++ACS    LD    +   +  + +  + AHV   LV+M + CG++  A +
Sbjct: 545 PNRVTYTSILNACSSPAALDWGRRIHQQVIEAGL-ATDAHVANTLVNMYSMCGSVKDARQ 603

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ M  RD+V+Y +MI G + H  G++A+ LFDR+  EGL PD+V +  +L AC++ G 
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           +E  W      + ++++V    + +       +V    + G    A  + + M ++ +  
Sbjct: 664 LE--W-----AKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVI 715

Query: 502 AWGALLGAC 510
           +W A++G C
Sbjct: 716 SWNAIIGGC 724



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 244/504 (48%), Gaps = 27/504 (5%)

Query: 41  LTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           + ++K+C     L    +VH HII+     D   V   I++ +     +  +  V+N++ 
Sbjct: 145 MKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINM-YIQCGSIEEARQVWNKLN 203

Query: 98  NPNTFL--WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           +    +  WN ++ GY Q     E   +   + +      + T   ++ +C    ++  G
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH   ++  +  DV V   ++++Y K   I  AR+VFD+M  ++VVSWT +I GYA  
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 216 GDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR----QLFDEMPERNVVSY 267
           G    A  +F  M +     + +++  ++        L+  +     + +   E ++   
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T ++  YAK G     R +FE   +RD++AW+ +I G A+ G  +EA +I+  M  + + 
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH--MDLSRAHVIAALVDMNAKCGNMDRA 385
           P++   V L++AC     L     + S + +     D+S   V  AL+ M A+CG++  A
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS---VQNALISMYARCGSIKDA 500

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             LF  M  +D++S+ +MI GL+  G G +A+++F  M   GL P+ V +T +L ACS  
Sbjct: 501 RLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSP 560

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
             ++ G R  +  Q + A + +  H A  +V++    G +K A ++ + M  +    A+ 
Sbjct: 561 AALDWGRRIHQ--QVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM-TQRDIVAYN 617

Query: 505 ALLGACKLYSDIELGELVANRLFE 528
           A++G    Y+   LG+  A +LF+
Sbjct: 618 AMIGG---YAAHNLGK-EALKLFD 637


>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
          Length = 573

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 285/542 (52%), Gaps = 53/542 (9%)

Query: 38  LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI- 96
           L  L  I +CK    L Q+H+H+I  GL  D  +++            + Y+    N+  
Sbjct: 6   LRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTD 65

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           ++  T  +NTL+  Y+ +      F ++ R++    VPD YTFP+V+KAC+  L V+EG 
Sbjct: 66  LHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGE 125

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H   ++ G   D++V  SL+  Y    +   A +VFDEM  R+VVSWT +I GY   G
Sbjct: 126 QVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTG 185

Query: 217 DLVEAKTVFDLMPERSNV-SWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMI 271
              EA  +F  M    NV ++ +++    ++G L   + +   + +R     +V    ++
Sbjct: 186 LFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALV 245

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K   +  AR LF+  PDRD+V+W+++ISG  Q  QP +++++F DM    V+PD  
Sbjct: 246 DMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRI 305

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
           IL S++SAC+ +G LD   WV  Y+ R  ++    H+  ALVDM AKCG ++ A  +F  
Sbjct: 306 ILTSVLSACASLGALDYGRWVQEYIERQGIEWD-IHIGTALVDMYAKCGCIEMALHIFNG 364

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +PNR++ ++ +++ GL++HGHG +A+  F+ M+  G+ P+EV F  +LTAC H GLV +G
Sbjct: 365 IPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEG 424

Query: 452 WRFFEAM-QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
             +F  M    +   P  EHY CM+DLL R G L  AY                      
Sbjct: 425 RSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYN--------------------- 463

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
                                   G YVLLSNIYAT +RW DV  VR  MK++G+RK PG
Sbjct: 464 ------------------------GVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPG 499

Query: 571 CS 572
            S
Sbjct: 500 SS 501


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/533 (34%), Positives = 288/533 (54%), Gaps = 23/533 (4%)

Query: 56  VHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           VH+H+IK     D     + V  F+  C+S+     Y+  VF R+   +   WN +L G+
Sbjct: 74  VHAHLIKSPFWSDVFVGTATVDMFVK-CNSV----DYAAKVFERMPERDATTWNAMLSGF 128

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            Q+    + F++F  +   E  PD  T   +I++ S   S++   A+HA  IR GVD  V
Sbjct: 129 CQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQV 188

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLM- 228
            V  + I  YGK  ++  A+ VF+ +   +R VVSW +M   Y+  G+  +A  ++ LM 
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248

Query: 229 -----PERSNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGD 279
                P+ S  ++  L         L   R +         ++++ +  T I  Y+K  D
Sbjct: 249 REEFKPDLS--TFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSED 306

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
             SAR LF+    R  V+W+ +ISGYA+ G  DEA+ +F  M     +PD   L+SL+S 
Sbjct: 307 TCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISG 366

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C + G+L+   W+D+             +  AL+DM +KCG++  A ++F+  P + VV+
Sbjct: 367 CGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVT 426

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI G +++G   +A+ LF +M+     P+ + F  VL AC+H G +E GW +F  M+
Sbjct: 427 WTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMK 486

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
            VY I P  +HY+CMVDLLGR G L+ A EL+ +M  +P A  WGALL ACK++ ++++ 
Sbjct: 487 QVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIA 546

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E  A  LF LEPQ A  YV ++NIYA A  W     +RS MK+R ++K PG S
Sbjct: 547 EQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGES 599



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 198/435 (45%), Gaps = 26/435 (5%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN  ++     +  +E   +F  + R    P+ +TFP V KAC+ +  V     +HA +I
Sbjct: 20  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           +     DVFVGT+ +D++ K   +  A KVF+ MPER+  +W AM+ G+   G   +A +
Sbjct: 80  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 139

Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYA 275
           +F  M        +  +  L++      + +L + M         +  V    T I  Y 
Sbjct: 140 LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 199

Query: 276 KVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           K GD+ SA+ +FEA    DR VV+W+++   Y+  G+  +A  ++  M  +  +PD    
Sbjct: 200 KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 259

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           ++L ++C     L     + S+      D      I   + M +K  +   A  LF+ M 
Sbjct: 260 INLAASCQNPETLTQGRLIHSHAIHLGTD-QDIEAINTFISMYSKSEDTCSARLLFDIMT 318

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
           +R  VS+  MI G +  G   +A++LF  M+  G  PD V    +++ C   G +E G +
Sbjct: 319 SRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG-K 377

Query: 454 FFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAW-------- 503
           + +A  ++Y          C  ++D+  + G +  A ++ ++ P E     W        
Sbjct: 378 WIDARADIYG-CKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EKTVVTWTTMIAGYA 435

Query: 504 --GALLGACKLYSDI 516
             G  L A KL+S +
Sbjct: 436 LNGIFLEALKLFSKM 450


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/528 (34%), Positives = 298/528 (56%), Gaps = 16/528 (3%)

Query: 55  QVHSHIIKKGLE---QDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           ++H+ ++K G E   Q ++L+  +   C  + + L     VF  I   +   WN++L  Y
Sbjct: 287 ELHAALLKSGSEVNIQCNALLVMYTK-CGRVDSALR----VFREIDEKDYISWNSMLSCY 341

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            QN  + E       ++R    PD      +  A  H+  +  G  +HA  I+  +D D 
Sbjct: 342 VQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDT 401

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            VG +L+D+Y K + I  +  VFD M  ++ +SWT +I  YA     +EA  +F    + 
Sbjct: 402 QVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKE 461

Query: 232 SNVSWNALIGGLVK----IGDLRSARQLFDEMPER---NVVSYTTMIDGYAKVGDMTSAR 284
                  +IG +++    +  +  A+QL          ++V    +ID Y + G++  + 
Sbjct: 462 GIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSL 521

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +FE    +D+V W+++I+ YA +G  +EA+ +F++M S +VQPD   LVS++ A   + 
Sbjct: 522 KMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLS 581

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           +L     V  +L R +  +  A ++++LVDM + CG++  A ++F  +  +D+V + +MI
Sbjct: 582 SLAKGKEVHGFLIRRNFHMEEA-IVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMI 640

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
               +HGHG+QA+ LF RML  G+TPD V+F  +L ACSH  LV +G  + + M + Y +
Sbjct: 641 NATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRL 700

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P  EHYAC+VDLLGR+G  + AYE + SMP++P +  W +LLGAC+++ + EL  + AN
Sbjct: 701 EPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAAN 760

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           RL ELEP N G+YVL+SN++A   +W +   VR+++ ERGLRK P CS
Sbjct: 761 RLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACS 808



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 208/461 (45%), Gaps = 22/461 (4%)

Query: 2   PKIDEPNTP-----CKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQV 56
           P I  P+       CK  +    L   +   P   P        L L+   K      QV
Sbjct: 21  PSISPPDPTSLKQLCKEGNLRQALRLLTSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQV 80

Query: 57  HSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           H+H +  G LE D   +A  +   +     ++ +  +F+ + +   F WN L+  Y  + 
Sbjct: 81  HAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSG 140

Query: 116 RFIEVFTIFVRLIREEAV----PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
              E   ++ R +R  A     PD  T   V+KA       R G  +H   ++ G+D   
Sbjct: 141 SACEALGVY-RAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRST 199

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           FV  +LI +Y K   +  A +VF+ M + R+V SW +MI G    G  ++A  +F  M +
Sbjct: 200 FVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGM-Q 258

Query: 231 RSNVSWNAL--IGGL---VKIGDLRSARQLFDEMPERNV---VSYTTMIDGYAKVGDMTS 282
           R+ +S N+   +G L    ++  L   R+L   + +      +    ++  Y K G + S
Sbjct: 259 RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDS 318

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  +F    ++D ++W++++S Y QNG   EA++  S+M     QPD   +VSL SA   
Sbjct: 319 ALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGH 378

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L     V +Y  +  +D S   V   L+DM  KC  ++ +A +F+ M  +D +S+ +
Sbjct: 379 LGWLLNGKEVHAYAIKQRLD-SDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTT 437

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           +I   +      +A+ +F     EG+  D +    +L ACS
Sbjct: 438 IITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACS 478



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 236/478 (49%), Gaps = 33/478 (6%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP-NTFLWNTLLKGYSQ 113
           +VH   +K GL++  + VA+ +   ++    L  +  VF  + +  +   WN+++ G  Q
Sbjct: 185 EVHGLAVKHGLDRS-TFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQ 243

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           N  F++   +F  + R     + YT   V++ C+ +  +  G  +HAA+++ G + ++  
Sbjct: 244 NGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC 303

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----- 228
             +L+ +Y K   +  A +VF E+ E++ +SW +M+  Y   G   EA      M     
Sbjct: 304 -NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF 362

Query: 229 -PERSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS 282
            P+ +  VS ++ +G L   G L + +++     ++ + S T    T++D Y K   +  
Sbjct: 363 QPDHACIVSLSSAVGHL---GWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           +  +F+    +D ++W+ +I+ YAQ+ +  EA++IF +   + ++ D  ++ S++ ACS 
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSG 479

Query: 343 VGNLDLSNWVDSYLSRSH-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           +  + L+  +  Y  R+  +DL    V   ++D+  +CG +  + ++FET+  +D+V++ 
Sbjct: 480 LETILLAKQLHCYAIRNGLLDLV---VKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWT 536

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF--FEAMQ 459
           SMI   +  G   +A+ LF  M S  + PD VA   +L A   +  +  G     F   +
Sbjct: 537 SMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRR 596

Query: 460 NVY---AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           N +   AIV S      +VD+    G L  A ++ N++  +     W A++ A  ++ 
Sbjct: 597 NFHMEEAIVSS------LVDMYSGCGSLSGALKVFNAVKCKDMV-LWTAMINATGMHG 647



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 5/195 (2%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM---CSK 324
           T ++  Y K G +  AR LF+    R V +W+ALI  Y  +G   EA+ ++  M    + 
Sbjct: 99  TKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAAS 158

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V PD   L S++ A    G+      V     +  +D S   V  AL+ M AKCG +D 
Sbjct: 159 GVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRS-TFVANALIAMYAKCGILDS 217

Query: 385 AAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           A  +FE M + RDV S+ SMI G   +G   QA+ LF  M    L+ +      VL  C+
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCT 277

Query: 444 HVGLVEDGWRFFEAM 458
            +  +  G     A+
Sbjct: 278 ELAQLNLGRELHAAL 292


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 231/363 (63%), Gaps = 1/363 (0%)

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           YAS+G L  +  +F      S   W A+I G    GD+ SA+QLFD MPE+++VS T M+
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAML 131

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
             YAK G++ +AR LF+   +RD V W+ +I GY QNG P+EA+ +F  M     +P+E 
Sbjct: 132 TCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEV 191

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            ++S++SAC Q+G L+   WV SY+  + +  +  HV  ALVDM +KCG+++ A  +F+ 
Sbjct: 192 TVLSVLSACGQLGALESGRWVHSYIENNGIQFN-VHVGTALVDMYSKCGSLEDARLVFDK 250

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + ++DVV++ SMI G ++HG  ++A+ LF  M   GL P  + F  +L+AC H G V +G
Sbjct: 251 IDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEG 310

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
           W  F  M++ Y I P  EHY CMV+LLGR GH++ AYEL+ +M +EP    WG LLGAC+
Sbjct: 311 WDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACR 370

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           L+  I LGE +   L +    N+G+Y+LLSNIYA    W  V  +R+ MK+ G++K PGC
Sbjct: 371 LHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGC 430

Query: 572 SSL 574
           SS+
Sbjct: 431 SSI 433



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 173/379 (45%), Gaps = 51/379 (13%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           LI K K  +HL Q+H+ + + GL+  H ++   +   ++    L YS A+F R  NP+ F
Sbjct: 36  LIDKSKTISHLLQIHAVLFRHGLDH-HPILNFKLQRSYASLGRLDYSVALFGRTQNPSVF 94

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            W  ++ G++     +    +F      + +P+K    L                     
Sbjct: 95  FWTAIIHGHALRGDVVSAQQLF------DTMPEKSLVSL--------------------- 127

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
                       T+++  Y K  E+  AR +FD M ER+ V W  MI GY   G   EA 
Sbjct: 128 ------------TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEAL 175

Query: 223 TVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDG 273
            +F  M     + + V+  +++    ++G L S R +   + E N + +     T ++D 
Sbjct: 176 VLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI-ENNGIQFNVHVGTALVDM 234

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y+K G +  AR +F+   D+DVVAW+++I GYA +G   EA+++F  MC   + P     
Sbjct: 235 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITF 294

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           + ++SAC   G +     + + +   +    +      +V++  + G++++A EL + M 
Sbjct: 295 IGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN 354

Query: 394 -NRDVVSYCSMIKGLSIHG 411
              D V + +++    +HG
Sbjct: 355 IEPDPVLWGTLLGACRLHG 373



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 151/323 (46%), Gaps = 35/323 (10%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C++    L  +  +F+ +   +   WN ++ GY+QN    E   +F R+++ +A P++ T
Sbjct: 133 CYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVT 192

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              V+ AC  + ++  G  +H+ +   G+  +V VGT+L+D+Y K   +  AR VFD++ 
Sbjct: 193 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 252

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQ 254
           +++VV+W +MIVGYA  G   EA  +F  M       +N+++  ++      G +     
Sbjct: 253 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 312

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           +F++M +                          E   +  +  +  +++   + G  ++A
Sbjct: 313 IFNKMKD--------------------------EYGIEPKIEHYGCMVNLLGRAGHVEQA 346

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
            ++  +M   N++PD  +  +L+ AC   G + L   +   L   ++  S  +++  L +
Sbjct: 347 YELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYIL--LSN 401

Query: 375 MNAKCGNMDRAAELFETMPNRDV 397
           + A  GN D  A L   M +  V
Sbjct: 402 IYAAVGNWDGVARLRTMMKDSGV 424


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/526 (34%), Positives = 286/526 (54%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+HS+++K G+  D+ +    + L +  +  +  +  +F+     N  LWN +L  Y Q 
Sbjct: 265 QLHSYLLKAGMSLDYIMEGSLLDL-YVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQI 323

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               + F IF R++     P+K+T+P +++ C+H   +  G  IH+  I+ G   D++V 
Sbjct: 324 DDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVS 383

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---- 230
             LID+Y K   +  A+++ D + E++VVSWT+MI GY       EA   F  M      
Sbjct: 384 GVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIW 443

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDMTSARSL 286
             N+   + I     I  +    Q+   +      +  ++ +G    YA+ G    A S 
Sbjct: 444 PDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSS 503

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FEA   ++ + W+ LISG+AQ+G  +EA+K+F  M     + + F  VS +SA + + ++
Sbjct: 504 FEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADI 563

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                + + + ++    S   +  AL+ +  KCG+++ A   F  M  R+ VS+ ++I  
Sbjct: 564 KQGKQIHARVIKTGYT-SETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITC 622

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            S HG G +A+ LFD+M  +GL P +V F  VLTACSHVGLVE+G  +F++M N + I P
Sbjct: 623 CSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHP 682

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
            P+HYAC+VD+LGR G L  A   +  MP+   +  W  LL ACK++ ++E+GE  A  L
Sbjct: 683 RPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHL 742

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ELEP ++ SYVLLSN YA   +W     +R  MK+RG+RK PG S
Sbjct: 743 LELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRS 788



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 192/405 (47%), Gaps = 10/405 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H+  I  GL   + ++ + +   ++    +  +  VF  +   +   W  +L GY+QN
Sbjct: 63  EIHAKAIICGL-SGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQN 121

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   ++  + R   VP  Y    ++ AC+     + G  IH  V + G   + FVG
Sbjct: 122 GLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVG 181

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            +LI LY + +    A +VF +M   + V++  +I G+A  G    A  +FD M      
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSL 286
             +V+  +L+     +GDLR  +QL   + +  +    +   +++D Y K GD+  A  +
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQI 301

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F++    +VV W+ ++  Y Q     ++  IF  M +  V+P++F    ++  C+  G +
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            L   + S   ++    S  +V   L+DM +K G +D+A  + + +  +DVVS+ SMI G
Sbjct: 362 GLGEQIHSLTIKNGFQ-SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAG 420

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              H   ++A+  F  M + G+ PD +     ++AC+ +  V  G
Sbjct: 421 YVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQG 465



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 131/548 (23%), Positives = 251/548 (45%), Gaps = 56/548 (10%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSY 88
           P P  L S L+   K +L      +H  + K+G   +  +    ISL   C S       
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSF----RL 196

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  VF  ++  ++  +NTL+ G++Q         IF  +      PD  T   ++ ACS 
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           V  +R+G  +H+ +++ G+  D  +  SL+DLY K  +I  A ++FD     NVV W  M
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 209 IVGYASVGDLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           +V Y  + DL ++  +F  M     R N  ++  ++      G++    Q+     +   
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGF 376

Query: 265 VS--YTT--MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            S  Y +  +ID Y+K G +  A+ + +   ++DVV+W+++I+GY Q+    EA++ F +
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS--YLSRSHMDLSRAHVIAALVDMNAK 378
           M +  + PD   L S +SAC+ +  +   + + +  Y+S    D+S   +   LV + A+
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVS---IWNGLVYLYAR 493

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG    A   FE + +++ +++  +I G +  G   +A+ +F +M   G   +   F   
Sbjct: 494 CGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSS 553

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           ++A +++  ++ G       + ++A V              +TG+  S  E+ N++    
Sbjct: 554 ISASANLADIKQG-------KQIHARVI-------------KTGY-TSETEISNALI--- 589

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
                 +L G C    D ++        FE+  +N  S+  +    +   R L+   +  
Sbjct: 590 ------SLYGKCGSIEDAKMD------FFEMTKRNEVSWNTIITCCSQHGRGLEALDLFD 637

Query: 559 KMKERGLR 566
           +MK++GL+
Sbjct: 638 QMKQQGLK 645



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 177/364 (48%), Gaps = 19/364 (5%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA  I  G+     +G  LIDLY K+  +  AR+VF+E+  R+ VSW A++ GYA  G 
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123

Query: 218 LVEAKTVFDLMPERSNV-----SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT---- 268
             EA  ++  M  RS V       ++++    K    +  R +  ++ ++   S T    
Sbjct: 124 GEEAVRLYREM-HRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
            +I  Y +      A  +F      D V ++ LISG+AQ G  D A+ IF +M    + P
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D   + SL++ACS VG+L     + SYL ++ M L    +  +L+D+  K G+++ A ++
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYI-MEGSLLDLYVKSGDIEEALQI 301

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F++    +VV +  M+          ++  +F RML+ G+ P++  +  +L  C+H G +
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 449 EDGWRFFE-AMQNVYAIVPSPEHY--ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
             G +     ++N +      + Y    ++D+  + G L  A  +L+ M  E    +W +
Sbjct: 362 GLGEQIHSLTIKNGF----QSDMYVSGVLIDMYSKYGWLDKAQRILD-MIEEKDVVSWTS 416

Query: 506 LLGA 509
           ++  
Sbjct: 417 MIAG 420


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/503 (36%), Positives = 289/503 (57%), Gaps = 19/503 (3%)

Query: 90  TAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           T +FNR V+  + F WN+++   +++    E    F  + +    P + +FP  IKACS 
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +L +  G   H     +G   D+FV ++LI +Y    ++  ARKVFDE+P+RN+VSWT+M
Sbjct: 89  LLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 209 IVGYASVGDLVEAKTVF-DLMPERSNVSWNALIG--GLVKIGDLRS---ARQLFDEMP-- 260
           I GY   G+ ++A ++F DL+ E ++      +   G+V +    S   A+ L + +   
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSF 208

Query: 261 ------ERNVVSYTTMIDGYAKVGD--MTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                 +R V    T++D YAK G+  +  AR +F+   D+D V++++++S YAQ+G  +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 313 EAVKIFSDMCSKNVQPDEFI-LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           EA  +F  +  + V     I L +++ A S  G L +   +   + R  ++     V  +
Sbjct: 269 EAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTS 327

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           ++DM  KCG ++ A   F+ M N++V S+ +MI G  +HGH  +A+ LF  M+  G+ P+
Sbjct: 328 IIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + F  VL ACSH GL + GW +F AM+  + + P  EHY CMVDLLGR G L+ AY+L+
Sbjct: 388 YITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             M +EP +  W +LL AC+++ ++EL E+   RLFEL+P N G Y+LLS+IYA + RW 
Sbjct: 448 QKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWK 507

Query: 552 DVCLVRSKMKERGLRKIPGCSSL 574
           DV  VR  MK RGL K PG S L
Sbjct: 508 DVERVRMTMKNRGLVKPPGFSLL 530



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 208/424 (49%), Gaps = 26/424 (6%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q H      G + D   V+  + + +S    L  +  VF+ I   N   W ++++GY  N
Sbjct: 97  QTHQQAFVFGYQSD-IFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTF------PLVIKACSHVLSVREGTAIHAAVIRWGVD 168
              ++  ++F  L+ EE   D   F        VI ACS V +     +IH+ VI+ G D
Sbjct: 156 GNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFD 215

Query: 169 EDVFVGTSLIDLYGKRKE--ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
             V VG +L+D Y K  E  ++ ARK+FD++ +++ VS+ +++  YA  G   EA  VF 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFR 275

Query: 227 LMPERSNVSWNALIGGLVKI-----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKV 277
            + +   V++N +    V +     G LR  + + D++     E +V+  T++ID Y K 
Sbjct: 276 RLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G + +AR  F+   +++V +W+A+I+GY  +G   +A+++F  M    V+P+    VS++
Sbjct: 336 GRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 338 SACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR- 395
           +ACS  G  D+  +W ++   R  ++    H    +VD+  + G + +A +L + M    
Sbjct: 396 AACSHAGLHDVGWHWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQKMKMEP 454

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D + + S++    IH +   A     R+    L P    + ++L   SH+      W+  
Sbjct: 455 DSIIWSSLLAACRIHKNVELAEISVARLFE--LDPSNCGYYMLL---SHIYADSGRWKDV 509

Query: 456 EAMQ 459
           E ++
Sbjct: 510 ERVR 513


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/536 (34%), Positives = 299/536 (55%), Gaps = 12/536 (2%)

Query: 48  KLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
           KL+ H+ Q+H+ +I  G L    S+    I+ C  +   +SY+  VF+ +      ++N+
Sbjct: 28  KLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIG-EISYARKVFDELPQRGVSVYNS 86

Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           ++  YS+     EV  ++ ++I E+  PD  TF + IKAC   L + +G A+    + +G
Sbjct: 87  MIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFG 146

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
              DVFV +S+++LY K  ++  A  +F +M +R+V+ WT M+ G+A  G  ++A   + 
Sbjct: 147 YKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYR 206

Query: 227 LMPE----RSNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGYAKVG 278
            M      R  V    L+     +GD +  R     L+      NVV  T+++D YAKVG
Sbjct: 207 EMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVG 266

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  A  +F     +  V+W +LISG+AQNG  ++A +   +M S   QPD   LV ++ 
Sbjct: 267 FIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLV 326

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           ACSQVG+L     V  Y+ + H+ L R     AL+DM +KCG +  + E+FE +  +D+V
Sbjct: 327 ACSQVGSLKTGRLVHCYILKRHV-LDRV-TATALMDMYSKCGALSSSREIFEHVGRKDLV 384

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + +MI    IHG+G++ VSLF +M    + PD   F  +L+A SH GLVE G  +F  M
Sbjct: 385 CWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVM 444

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
            N Y I PS +HY C++DLL R G ++ A +++NS  ++     W ALL  C  + ++ +
Sbjct: 445 INKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSV 504

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           G++ AN++ +L P + G   L+SN +ATA++W +V  VR  M+   + K+PG S++
Sbjct: 505 GDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAI 560


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/528 (33%), Positives = 297/528 (56%), Gaps = 16/528 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+H +  G + +  + +  + L +   + ++Y+  VF+++ + +T LWNT++ G  +N 
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDL-YCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNC 183

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            + +   +F  ++ +    D  T   V+ A + +  V+ G  I    ++ G   D +V T
Sbjct: 184 CYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLT 243

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV 234
            LI ++ K +++  AR +F  + + ++VS+ A+I G++  G+   A   F +L+     V
Sbjct: 244 GLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRV 303

Query: 235 SWNALIGGLVKIGD------LRSARQLF----DEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           S + ++G L+ +        L    Q F      + + +V +  T I  Y+++ ++  AR
Sbjct: 304 SSSTMVG-LIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTI--YSRLNEIDLAR 360

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LF+ + ++ V AW+A+ISGYAQ+G  + A+ +F +M +    P+   + S++SAC+Q+G
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            L     V   +   +++    +V  AL+DM AKCGN+  A++LF+    ++ V++ +MI
Sbjct: 421 ALSFGKSVHQLIKSKNLE-QNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMI 479

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G  +HG+G +A+ LF+ ML  G  P  V F  VL ACSH GLV +G   F AM N Y I
Sbjct: 480 FGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRI 539

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P  EHYACMVD+LGR G L+ A E +  MPVEP  + WG LLGAC ++ D  L  + + 
Sbjct: 540 EPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASE 599

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           RLFEL+P N G YVLLSNIY+    +     VR  +K+R L K PGC+
Sbjct: 600 RLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCT 647



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/528 (25%), Positives = 247/528 (46%), Gaps = 46/528 (8%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L LI K     HL + H+ +I+ G + D + V         +     ++ A+F  +  P+
Sbjct: 12  LALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGAT-RHARALFFSVPKPD 70

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
            FL+N L+KG+S +     + + +  L++   + PD +T+   I A         G  +H
Sbjct: 71  IFLFNVLIKGFSFSPDASSI-SFYTHLLKNTTLSPDNFTYAFAISASP---DDNLGMCLH 126

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY------- 212
           A  +  G D ++FV ++L+DLY K   ++ ARKVFD+MP+R+ V W  MI G        
Sbjct: 127 AHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYD 186

Query: 213 ---------ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
                     + G  +++ TV  ++P  + +     +G  ++   L+      D +    
Sbjct: 187 DSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQ-EVKVGMGIQCLALKLGFHFDDYV---- 241

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
               T +I  ++K  D+ +AR LF      D+V+++ALISG++ NG+ + AVK F ++  
Sbjct: 242 ---LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLV 298

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              +     +V L+   S  G+L L+  +  +  +S   L +  V  AL  + ++   +D
Sbjct: 299 SGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTIL-QPSVSTALTTIYSRLNEID 357

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A +LF+    + V ++ +MI G +  G    A+SLF  M++   TP+ V  T +L+AC+
Sbjct: 358 LARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACA 417

Query: 444 HVGLVEDGWRFFEAM------QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
            +G +  G    + +      QN+Y           ++D+  + G++  A +L + +  E
Sbjct: 418 QLGALSFGKSVHQLIKSKNLEQNIYV-------STALIDMYAKCGNISEASQLFD-LTSE 469

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
            +   W  ++    L+   +    + N +  L  Q + S   LS +YA
Sbjct: 470 KNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPS-SVTFLSVLYA 516


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 287/541 (53%), Gaps = 67/541 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
            +++K C    +L + H+ I+  G  Q + ++ H +SL  S  + L  +  VF  I  P+
Sbjct: 31  FSVLKSCVSFRNLAKTHAQIVVSGFSQKNYILNHLLSLYISFGS-LGSAQKVFEDITAPS 89

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           T +WN ++KG++++    +   +F R+       + +T+  ++ AC      REG  IH 
Sbjct: 90  TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHG 149

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V+  G   +++V T+LI+L                               YA+ GD   
Sbjct: 150 RVLVNGYWSNLYVRTNLINL-------------------------------YANGGD--- 175

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                               GG     DL+ A  LFDEMP+ NVV + +++ GY + GD 
Sbjct: 176 --------------------GGDF---DLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDF 212

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             AR +F+  P+R+V  W+ +++G+AQNGQ   A+ +F  M    V+ D+  LV+ +SAC
Sbjct: 213 DGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSAC 272

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA---ALVDMNAKCGNMDRAAELFETMPNRDV 397
           +++G+L L  W+  Y+ R+        +++   AL+ M A CG MD A +LFE +P R+ 
Sbjct: 273 AELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNT 332

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEG---LTPDEVAFTIVLTACSHVGLVEDGWRF 454
           VS+ S+I G +  G G +A+ +F  ML  G   + PDE+ F   LTACSH GL+ DG R 
Sbjct: 333 VSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRL 392

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           F++M   + ++P  EHY CMVDLL R G L  A  L+ SMP++P+ + WGALL  C+L+ 
Sbjct: 393 FQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHK 452

Query: 515 DIELGELVANRL-FELEPQN--AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           + E+   VA  L FE++P N  AG ++LL+N+YA   RW D   VR  M + G++K  G 
Sbjct: 453 NDEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGR 512

Query: 572 S 572
           S
Sbjct: 513 S 513


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/492 (37%), Positives = 281/492 (57%), Gaps = 12/492 (2%)

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+++V  +   WN ++ G+ Q   F E + +F+ ++  +  P   T   +I++C  + ++
Sbjct: 213 FHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNL 272

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  +H  V+ +G+  D  V T+LID+Y K  ++  AR +F+ MP RN+VSW  MI GY
Sbjct: 273 TFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGY 332

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQLFDEMPER----N 263
              G LVE   +F  +    +V +++     LI    +  DL   + L   +  R    N
Sbjct: 333 VQNGLLVETLRLFQKLI-MDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLN 391

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +V  T ++D YAK G +  A S+FE   +++V++W+A++ G AQNG   +A+K+F  M +
Sbjct: 392 LVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQN 451

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V  +   LVSL+  C+ +G L     V + L+R H   S   V+ AL+DM AKC  ++
Sbjct: 452 ERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFA-SEVVVMTALIDMYAKCSKIN 510

Query: 384 RAAELFE-TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
            A  +F+  +  +DV+ Y SMI G  +HG G +A+ ++ RM  EGL P+E  F  +L+AC
Sbjct: 511 SAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSAC 570

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           SH GLVE+G   F+ M   +   P+ + YAC+VDLL R G L+ A EL+N MP  P +  
Sbjct: 571 SHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGI 630

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
              LL  C L+ DIELG  +A+RL  LE +N   Y+ LSNIYA A RW  V  VR  M E
Sbjct: 631 LETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMME 690

Query: 563 RGLRKIPGCSSL 574
           + ++KIPG SS+
Sbjct: 691 QEIKKIPGYSSI 702



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 225/438 (51%), Gaps = 15/438 (3%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
           II   +  D  LVA  ++   SL   L  +  VF+ I  P T L N ++ GY QN R+ +
Sbjct: 80  IITNPIYGDQFLVAKLVAAYSSLGC-LENARKVFDEIPQPKTVLCNAMVNGYLQNERYND 138

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
              +   + R     D YT    +KAC  +L    G  +    +  G+    F+G+S+++
Sbjct: 139 CIELLKMMSRCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILN 198

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNA 238
              K  +I CA+  F +M E++VV W  MI G+   G   E   +F D++  +   S   
Sbjct: 199 FLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVT 258

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSY---------TTMIDGYAKVGDMTSARSLFEA 289
           +I  +   G++R+    F +     V+ +         TT+ID Y K GD+ SAR +FE 
Sbjct: 259 MISLIQSCGEMRNLT--FGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFEN 316

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            P R++V+W+ +ISGY QNG   E +++F  +   +V  D   +VSL+  CS+  +LD  
Sbjct: 317 MPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGG 376

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             +  ++ R  +DL+   +  A+VD+ AKCG++  A+ +FE M N++V+S+ +M+ GL+ 
Sbjct: 377 KILHGFIYRRGLDLNLV-LPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQ 435

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           +GH R A+ LFD+M +E +T + +    ++  C+ +GL+ +G R   A    +       
Sbjct: 436 NGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREG-RSVHATLTRFHFASEVV 494

Query: 470 HYACMVDLLGRTGHLKSA 487
               ++D+  +   + SA
Sbjct: 495 VMTALIDMYAKCSKINSA 512



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 208/410 (50%), Gaps = 17/410 (4%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           N  +PS + + ++LI+ C    +L     +H  ++  G+ +D  ++   I + +  +  +
Sbjct: 250 NKIEPSAV-TMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDM-YCKSGDV 307

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
             +  +F  + + N   WN ++ GY QN   +E   +F +LI ++   D  T   +I+ C
Sbjct: 308 ESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLC 367

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S    +  G  +H  + R G+D ++ + T+++DLY K   ++ A  VF+ M  +NV+SWT
Sbjct: 368 SRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWT 427

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNAL-IGGLVK----IGDLRSARQLFDEMPE 261
           AM+VG A  G   +A  +FD M +   V++NAL +  LV     +G LR  R +   +  
Sbjct: 428 AMLVGLAQNGHARDALKLFDQM-QNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTR 486

Query: 262 ----RNVVSYTTMIDGYAKVGDMTSARSLFE-AAPDRDVVAWSALISGYAQNGQPDEAVK 316
                 VV  T +ID YAK   + SA  +F+     +DV+ ++++ISGY  +G   +A+ 
Sbjct: 487 FHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALC 546

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           ++  M  + +QP+E   VSL+SACS  G ++    +   + + H       + A +VD+ 
Sbjct: 547 VYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLL 606

Query: 377 AKCGNMDRAAELFETMPNRDVVSYC-SMIKGLSIHGHGRQAVSLFDRMLS 425
           ++ G + +A EL   MP         +++ G  +H      V L DR+LS
Sbjct: 607 SRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLS 656


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 279/489 (57%), Gaps = 10/489 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF +I   +   WN++L  Y QNS + E    F  +++    PD      +  A  H+  
Sbjct: 323 VFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSR 382

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G   HA  I+  +  D+ VG +L+D+Y K   I C+ KVF+ M  R+ +SWT ++  
Sbjct: 383 LNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILAC 442

Query: 212 YASVGDLVEA-KTVFDLMPERSNVSWNALIG-------GLVKIGDLRSARQLFDEMPERN 263
           +A      EA + + +L  E   V  + +IG       GL  I  L+            +
Sbjct: 443 FAQSSRHSEALEMILELQKEGIMVD-SMMIGSILETCCGLKSISLLKQVHCYAIRNGLLD 501

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           ++    +ID Y + G+   + +LF+    +D+V+W+++I+    NG+ + AV +F++M  
Sbjct: 502 LILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQK 561

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
            N+QPD   LVS++ A + + +L     V  +L R +  +    V+++LVDM + CG+M+
Sbjct: 562 ANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPI-EGPVVSSLVDMYSGCGSMN 620

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +FE    +DVV + +MI    +HGHG+QA+ LF RML  GLTPD V+F  +L ACS
Sbjct: 621 YAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACS 680

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H  LVE+G  + + M + Y + P  EHYAC+VD+LGR+G  + AYE + +MP++P ++ W
Sbjct: 681 HSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVW 740

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLGAC+++ +  L  + AN+L ELEP N G+Y+L+SN++A   +W +    R++M ER
Sbjct: 741 CALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAER 800

Query: 564 GLRKIPGCS 572
           GLRK P CS
Sbjct: 801 GLRKNPACS 809



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 187/406 (46%), Gaps = 23/406 (5%)

Query: 55  QVHSHIIKKGL--EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           QVH+H +  G   E D   +A  +   +     +  +  +FN +     F WN L+  Y 
Sbjct: 78  QVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYL 137

Query: 113 QNSRFIEVFTIFVRLIREEA---VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
            +    E   ++  +    A    PD  T   V+KAC      R G  +H   ++ G+D+
Sbjct: 138 SSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDK 197

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDL 227
              V  +LI +Y K   +  A +VF+ + +  R+V SW +++ G    G  +EA  +F  
Sbjct: 198 STLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRG 257

Query: 228 M-----PERSNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVG 278
           M     P  S  S  A++    ++G L   R+L   +     E N+     ++  YAK G
Sbjct: 258 MQSAGFPMNSYTSV-AVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVM-YAKYG 315

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + SA  +F    ++D ++W++++S Y QN    EA+  F +M     QPD   +VSL S
Sbjct: 316 RVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSS 375

Query: 339 ACSQVGNLDLSNWVDSYL--SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           A   +  L+      +Y    R H DL    V   L+DM  KCG+++ +A++FE+M  RD
Sbjct: 376 ALGHLSRLNNGREFHAYAIKQRLHTDL---QVGNTLMDMYIKCGSIECSAKVFESMGIRD 432

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
            +S+ +++   +      +A+ +   +  EG+  D +    +L  C
Sbjct: 433 HISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETC 478



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/511 (22%), Positives = 235/511 (45%), Gaps = 51/511 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP--NTFLWNTLLKGYS 112
           +VH   +K GL++  +LVA+ +   ++    L  +  VF  +     +   WN+++ G  
Sbjct: 185 EVHGLAVKVGLDKS-TLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCV 243

Query: 113 QNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           QN R +E   +F R ++    P + YT   V++ C+ +  +  G  +HAA+++ G + ++
Sbjct: 244 QNGRTLEALALF-RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNI 302

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
               +L+ +Y K   +  A +VF ++ E++ +SW +M+  Y       EA   F  M + 
Sbjct: 303 QC-NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQH 361

Query: 232 SN-------VSWNALIGGLVKIGDLRSARQL-FDEMPERNVVSYTTMIDGYAKVGDMTSA 283
                    VS ++ +G L ++ + R        +    ++    T++D Y K G +  +
Sbjct: 362 GFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECS 421

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +FE+   RD ++W+ +++ +AQ+ +  EA+++  ++  + +  D  ++ S++  C  +
Sbjct: 422 AKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGL 481

Query: 344 GNLDLSNWVDSYLSRSH-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            ++ L   V  Y  R+  +DL   +    L+D+  +CG  D +  LF+ +  +D+VS+ S
Sbjct: 482 KSISLLKQVHCYAIRNGLLDLILEN---RLIDIYGECGEFDHSLNLFQRVEKKDIVSWTS 538

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR--------- 453
           MI   + +G    AV LF  M    + PD VA   +L A + +  +  G +         
Sbjct: 539 MINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRN 598

Query: 454 ------FFEAMQNVYAIVPSPEH---------------YACMVDLLGRTGHLKSAYELLN 492
                    ++ ++Y+   S  +               +  M++  G  GH K A +L  
Sbjct: 599 FPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFK 658

Query: 493 SM---PVEPHASAWGALLGACKLYSDIELGE 520
            M    + P   ++ ALL AC     +E G+
Sbjct: 659 RMLQTGLTPDHVSFLALLYACSHSKLVEEGK 689



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 187/402 (46%), Gaps = 21/402 (5%)

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV---DEDVFVGTSLIDLY 181
           +R +   A P +  +  V+   +   +  EG  +HA  +  G    D+D F+ T L+ +Y
Sbjct: 46  LRQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMY 105

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-------NV 234
           G+   +  AR++F+ MP R V SW A++  Y S G   EA  V+  M   +         
Sbjct: 106 GRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGC 165

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFE-- 288
           +  +++      GD R   ++         +++ +    +I  YAK G + SA  +FE  
Sbjct: 166 TLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWL 225

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
               RDV +W++++SG  QNG+  EA+ +F  M S     + +  V+++  C+++G L L
Sbjct: 226 QQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSL 285

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
              + + L +   +L+      AL+ M AK G +D A  +F  +  +D +S+ SM+    
Sbjct: 286 GRELHAALLKCGSELNIQ--CNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYV 343

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
            +    +A+  F  ML  G  PD      + +A  H+  + +G R F A      +    
Sbjct: 344 QNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNG-REFHAYAIKQRLHTDL 402

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           +    ++D+  + G ++ + ++  SM +  H S W  +L AC
Sbjct: 403 QVGNTLMDMYIKCGSIECSAKVFESMGIRDHIS-WTTIL-AC 442


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 294/552 (53%), Gaps = 33/552 (5%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           T++K C     L +   +H+  ++ G E D  L    + + +S    +  +  VF +I N
Sbjct: 56  TVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDM-YSKCGTVYDALKVFTKIRN 114

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   W+ ++ G  Q     E   +F  + R+ A P+++T   ++   +++  +R G +I
Sbjct: 115 PDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSI 174

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  + ++G + D  V   LI +Y K + +    KVF+ M   ++VSW A++ G+      
Sbjct: 175 HGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTC 234

Query: 219 VEAKTVFDLMPERSNVSWNALIGGL-----VKIGDLRSARQLFDEMPERNVVSY------ 267
                +F          +  L+ G        I  LRS   L D    + V ++      
Sbjct: 235 GRGPRIF----------YQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSS 284

Query: 268 -------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
                  T ++D YAK   +  A   F+   +RD+ +W+ +ISGYAQ  Q ++AVK F  
Sbjct: 285 DDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQ 344

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  + ++P+E+ L S +S CS +  L+    + +   ++        V +ALVD+  KCG
Sbjct: 345 MQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAG-HFGDIFVGSALVDLYGKCG 403

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            M+ A  +F+ + +RD+VS+ ++I G S HG G +A+  F  MLSEG+ PDE  F  VL+
Sbjct: 404 CMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLS 463

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACS +GLVE+G + F++M  +Y I PS EHYACMVD+LGR G        +  M + P++
Sbjct: 464 ACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYS 523

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W  +LGACKL+ +++ GE  A +LFE+EP    SY+LLSNI+A+  RW DV  +R+ M
Sbjct: 524 LIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALM 583

Query: 561 KERGLRKIPGCS 572
             RG++K PGCS
Sbjct: 584 TSRGIKKEPGCS 595



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 217/444 (48%), Gaps = 28/444 (6%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  +   N   WN LL GY+Q     +V  +F ++   E    K+T   V+K C++  S
Sbjct: 7   LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGS 66

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +REG  +HA  +R G + D F+G SL+D+Y K   +  A KVF ++   +VV+W+AMI G
Sbjct: 67  LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITG 126

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFD-----EMPER 262
               G   EA  +F LM  +    +  + ++L+     +GDLR  + +            
Sbjct: 127 LDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESD 186

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           N+VS   +I  Y K   +     +FEA  + D+V+W+AL+SG+  +       +IF  M 
Sbjct: 187 NLVS-NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQML 245

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
            +  +P+ F  +S++ +CS + + +    V +++ ++  D     V  ALVDM AK   +
Sbjct: 246 LEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSD-DDDFVGTALVDMYAKARCL 304

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           + A   F+ + NRD+ S+  +I G +      +AV  F +M  EG+ P+E      L+ C
Sbjct: 305 EDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGC 364

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHY------ACMVDLLGRTGHLKSAYELLNSMPV 496
           SH+  +E+G       + ++A+     H+      + +VDL G+ G ++ A  +   + +
Sbjct: 365 SHMATLENG-------RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-I 416

Query: 497 EPHASAWGALLGACKLYSDIELGE 520
                +W  ++     YS    GE
Sbjct: 417 SRDIVSWNTIISG---YSQHGQGE 437



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWNALIGGLVK 245
           A ++F  MPE+N VSW A++ GYA +GD  +   +F  M E     S  + + ++ G   
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 246 IGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
            G LR  + L         E +     +++D Y+K G +  A  +F    + DVVAWSA+
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           I+G  Q G   EA ++F  M  K  +P++F L SL+S  + +G+L     +   + +   
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           + S   V   L+ M  K   ++   ++FE M N D+VS+ +++ G        +   +F 
Sbjct: 184 E-SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 422 RMLSEGLTPDEVAFTIVLTACS 443
           +ML EG  P+   F  VL +CS
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCS 264



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 96/172 (55%), Gaps = 1/172 (0%)

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M  A  LF   P+++ V+W+AL++GYAQ G   + +K+F  M     +  +F L +++  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+  G+L     + +   RS  ++    +  +LVDM +KCG +  A ++F  + N DVV+
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDE-FLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + +MI GL   GHG++A  LF  M  +G  P++   + +++  +++G +  G
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           M+ A  LF  MP ++ VS+ +++ G +  G G++ + LF +M        +   + VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTGHLKSAYELLNSMPVEPHA 500
           C++ G + +G +   A+  + +     E   C +VD+  + G +  A ++   +   P  
Sbjct: 61  CANTGSLREG-KVLHALA-LRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDV 117

Query: 501 SAWGALL 507
            AW A++
Sbjct: 118 VAWSAMI 124


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 303/551 (54%), Gaps = 14/551 (2%)

Query: 33  KPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           KP C+  A +L+  C     LH   Q+HSH IK G+  D  L    + L +S    +  +
Sbjct: 359 KPDCITVA-SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL-YSKCADVETA 416

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
              F      N  LWN +L  Y Q     + F IF ++  E  +P+++T+P +++ C+ +
Sbjct: 417 HKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++  G  IH  VI+ G   +V+V + LID+Y K  +++ A ++   +PE +VVSWTAMI
Sbjct: 477 GALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMI 536

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER--- 262
            GY       EA  +F+ M  R     N+ + + I     I  LR  +Q+  +       
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFG 596

Query: 263 -NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            ++     +I  YA+ G +  A   FE   D++ ++W++L+SG AQ+G  +EA+++F  M
Sbjct: 597 ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
                + + F   S +SA + + N+     + S + ++  D  R  V  +L+ + AK G+
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER-EVSNSLISLYAKSGS 715

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A   F  M  R+V+S+ +MI G S HG G +A+ LF+ M   G+ P+ V F  VL+A
Sbjct: 716 ISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSA 775

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH+GLV++G  +FE+M  ++ +VP  EHY C+VDLLGR G L  A E +  MP+   A 
Sbjct: 776 CSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAM 835

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            W  LL AC ++ +IE+GE  A+ L ELEP+++ +YVL+SNIYA + +W+     R  MK
Sbjct: 836 IWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMK 895

Query: 562 ERGLRKIPGCS 572
           + G++K PG S
Sbjct: 896 DXGVKKEPGRS 906



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 251/527 (47%), Gaps = 32/527 (6%)

Query: 18  SMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS 77
           ++L  C   A   FP P  L S L+   K +L     Q+H  +IK G   +  +    ++
Sbjct: 245 AILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           L +S +  L  +  +F+ + + +   +N+L+ G  Q         +F ++ R+   PD  
Sbjct: 305 L-YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T   ++ AC+ V ++ +G  +H+  I+ G+  D+ +  SL+DLY K  ++  A K F   
Sbjct: 364 TVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXT 423

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR 253
              N+V W  M+V Y  + +L ++  +F  M       +  ++ +++     +G L    
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGE 483

Query: 254 QLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
           Q+   +     + NV   + +ID YAK G +  A  +    P+ DVV+W+A+I+GY Q+ 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV--DSYLSRSHMDLSRAH 367
              EA+++F +M  + +Q D     S +SAC+ +  L     +   SY +    DLS   
Sbjct: 544 MFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS--- 600

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           +  AL+ + A+CG +  A   FE + +++ +S+ S++ GL+  G+  +A+ +F RML   
Sbjct: 601 INNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV------PSPEHYACMVDLLGRT 481
              +   +   ++A + +  ++ G       Q ++++V         E    ++ L  ++
Sbjct: 661 AEVNMFTYGSAISAAASLANIKQG-------QQIHSMVLKTGYDSEREVSNSLISLYAKS 713

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           G +  A+   N M  E +  +W A++     YS    G + A RLFE
Sbjct: 714 GSISDAWREFNDMS-ERNVISWNAMITG---YSQHGCG-MEALRLFE 755



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 199/446 (44%), Gaps = 11/446 (2%)

Query: 51  THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            ++ QVHS     G +    LVA+ +   +S    +  +  VFN I   +   W  ++ G
Sbjct: 177 NYVKQVHSRTFYYGFDSS-PLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISG 235

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            SQN    E   +F  +   E  P  Y    V+ A + +     G  +H  VI+WG   +
Sbjct: 236 LSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSE 295

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            +V   L+ LY + +++  A ++F  M  R+ VS+ ++I G    G    A  +F  M  
Sbjct: 296 TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQR 355

Query: 231 R----SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTS 282
                  ++  +L+     +G L    QL     +     +++   +++D Y+K  D+ +
Sbjct: 356 DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVET 415

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A   F      ++V W+ ++  Y Q     ++ +IF  M  + + P++F   S++  C+ 
Sbjct: 416 AHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTS 475

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G L L   + +++ ++   L+  +V + L+DM AK G +  A  +   +P  DVVS+ +
Sbjct: 476 LGALYLGEQIHTHVIKTGFQLN-VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA 534

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G   H    +A+ LF+ M   G+  D + F   ++AC+ +  +  G +   A     
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSYAA 593

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAY 488
                      ++ L  R G ++ AY
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAY 619



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 206/436 (47%), Gaps = 24/436 (5%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC-S 147
           +  VF+   N + F WN ++  +       +VF +F R++ E   P+ YTF  V+KAC  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
             ++      +H+    +G D    V   LIDLY K   I  A+KVF+ +  +++V+W A
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 208 MIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           MI G +  G   EA  +F      ++ P    +S  +++    KI       QL   + +
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLS--SVLSASTKIQLFELGEQLHCLVIK 289

Query: 262 RNVVSYTTMIDG----YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
               S T + +G    Y++   + SA  +F     RD V++++LISG  Q G  D A+++
Sbjct: 290 WGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALEL 349

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AALVDM 375
           F+ M    ++PD   + SL+SAC+ VG L     + S+  ++ M    A +I   +L+D+
Sbjct: 350 FTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMS---ADIILEGSLLDL 406

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            +KC +++ A + F      ++V +  M+       +   +  +F +M  EG+ P++  +
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNS 493
             +L  C+ +G +  G +      +V         Y C  ++D+  + G L  A  +L  
Sbjct: 467 PSILRTCTSLGALYLGEQIH---THVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRR 523

Query: 494 MPVEPHASAWGALLGA 509
           +P E    +W A++  
Sbjct: 524 LP-EDDVVSWTAMIAG 538



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 19/342 (5%)

Query: 124 FVRLIREEAVPDKY-TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
            +  + E  V   Y  +  +++ C    S+ E   +H  + + G D +  +  SL+D Y 
Sbjct: 45  LMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYF 104

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
           +  +   A KVFDE   R+V SW  MI  + +     +   +F  M             G
Sbjct: 105 RHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAG 164

Query: 243 LVKI---GDL----------RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           ++K    GD+          R+    FD  P    +    +ID Y+K G + SA+ +F  
Sbjct: 165 VLKACVGGDIAFNYVKQVHSRTFYYGFDSSP----LVANLLIDLYSKNGYIESAKKVFNC 220

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
              +D+V W A+ISG +QNG  +EA+ +F DM +  + P  ++L S++SA +++   +L 
Sbjct: 221 ICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG 280

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             +   + +     S  +V   LV + ++   +  A  +F TM +RD VSY S+I GL  
Sbjct: 281 EQLHCLVIKWGFH-SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            G   +A+ LF +M  + L PD +    +L+AC+ VG +  G
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 1/178 (0%)

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           +++ + M  + V+ +    + L+  C   G+L  +  +   +S+S  D     +I +LVD
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFD-GEPLLIDSLVD 101

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
              + G+   A ++F+   NR V S+  MI          Q   LF RML+EG+TP+   
Sbjct: 102 NYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYT 161

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           F  VL AC    +  +  +   +    Y    SP     ++DL  + G+++SA ++ N
Sbjct: 162 FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 295/526 (56%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH ++IK G + D       + +      P + + AVF  I  P+   WN ++ G   +
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEA-AIAVFYEIPKPDIVSWNAVIAGCVLH 267

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            +      +  ++      P  +T    +KAC+ +  V+ G  +H+A+++  ++ D FVG
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             LID+Y K   +  AR VFD MP ++V+ W ++I GY++ G  +EA ++F  M +    
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE 387

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVS--------YTTMIDGYAKVGDMTSARSL 286
                +  ++K      A    +++   ++ S          +++D Y K   +  A  +
Sbjct: 388 FNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKV 447

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE  P  D+VA++++I+ Y+Q G  +EA+K++  M  ++++PD FI  SL +AC+ +   
Sbjct: 448 FEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAY 507

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +    +  ++ +  + LS      +LV+M AKCG++D A+ +F  +  R +VS+ +MI G
Sbjct: 508 EQGKQIHVHVLKCGL-LSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGG 566

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
           L+ HGHGR+A+ LF +ML  G+ P+ +    VL+AC+H GLV +  RFF  M+ ++ I P
Sbjct: 567 LAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITP 626

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + EHYACMVD+LGR G L  A  L+  MP +  A+ WGALLGA +++ +IELG   A  L
Sbjct: 627 TQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEML 686

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             LEP+ +G+++LL+NIYA+   W +V  VR  MK   ++K PG S
Sbjct: 687 LTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMS 732



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 215/465 (46%), Gaps = 63/465 (13%)

Query: 100 NTFLWNTLLKGYS-----QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           N F ++++LKG S     +  + I    +   +I     P++++   V+ AC+ +     
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG--- 211
           G  +H  +I+ G D D F   +L+D+Y K      A  VF E+P+ ++VSW A+I G   
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 212 ----------YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIG-DLRSARQLFDEMP 260
                        +G    A ++F L    S +   A I GLVK+G  L SA    D  P
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTL---SSALKACAAI-GLVKLGRQLHSALMKMDMEP 322

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           +  V     +ID Y+K G +  AR +F+  P +DV+ W+++ISGY+  G   EA+ +F++
Sbjct: 323 DSFVG--VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTN 380

Query: 321 MCSKNVQPDEFILVSLM--SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
           M  + ++ ++  L +++  +A SQ           S  S    D    +V  +L+D   K
Sbjct: 381 MYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYD---GYVANSLLDSYGK 437

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           C  ++ AA++FE  P  D+V+Y SMI   S +G G +A+ ++ RM    + PD   F+ +
Sbjct: 438 CCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSL 497

Query: 439 LTACSHVGLVEDGWRFF---------------EAMQNVYAIVPSPEHYAC---------- 473
             AC+++   E G +                  ++ N+YA   S +  +C          
Sbjct: 498 FNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGI 557

Query: 474 -----MVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGAC 510
                M+  L + GH + A +L   M    + P+     ++L AC
Sbjct: 558 VSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSAC 602



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 44/295 (14%)

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA---------------- 314
           ++ Y+K      AR L   + + D+V+WSALISGY QNG+ +EA                
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 315 ------------------------VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
                                   V + ++M S  + P+EF L ++++AC+ + + +   
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            V  YL +   D S      AL+DM AK G  + A  +F  +P  D+VS+ ++I G  +H
Sbjct: 209 KVHGYLIKLGYD-SDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLH 267

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
                A+ L  +M S  + P     +  L AC+ +GLV+ G +   A+  +  + P    
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKM-DMEPDSFV 326

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL-GACKLYSDIELGELVAN 524
              ++D+  + G L+ A  + + MP +     W +++ G      DIE   L  N
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXKD-VIVWNSIISGYSNCGYDIEAMSLFTN 380


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 296/564 (52%), Gaps = 50/564 (8%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLA-TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
           Q+H HII  GL +D  LV+  +    SL   P +++    + +  P +  WN L+  Y +
Sbjct: 100 QLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCS--WNILITSYVK 157

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           +  +      + +++ +   PD +TFP ++KAC    +++ G  +H ++  W     +FV
Sbjct: 158 HKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFV 217

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
             +LI +YG+  E+  AR +FD M ER+ VSW +MI  Y+S G   EA  +F+ M     
Sbjct: 218 HNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCL 277

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--------------------------RN 263
           E + V+WN + GG +++G+   A +L  +M                            + 
Sbjct: 278 EINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKE 337

Query: 264 VVSYT-------------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +  +T              ++  YA+  D+  A  LF    D+  + W++++SG    G+
Sbjct: 338 IHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGR 397

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            +EA+ +F ++    V+PD     S++  C++V +L        Y+++ H D  R H++ 
Sbjct: 398 VEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITK-HRDF-RDHLLL 455

Query: 371 --ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             ALVDM A+ G +  A  +F ++  +D V+Y S+I G  + G G +AV LF+ M    +
Sbjct: 456 WNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQI 515

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD +    VL+ACSH GLV      F  MQ+V+ + P  EHYACM DL GR G L  A 
Sbjct: 516 KPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAK 575

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E++  MP  P ++ W  L+GAC ++ ++++GE  A +L E+ P+++G YVL++N+YA A 
Sbjct: 576 EIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAG 635

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
            W  +  +R+ M++ G+ KIPGCS
Sbjct: 636 SWSKLAEIRTLMRDSGVAKIPGCS 659


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/553 (32%), Positives = 298/553 (53%), Gaps = 81/553 (14%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHV--LSVREGT 156
           +T L N ++  Y++ S       +F  L+   ++ PD Y+F  ++ A  H+  +SVR   
Sbjct: 120 DTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCA 179

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC---ARKVFDEMPERNVVSWT------- 206
            +  +V++ G    + V  +L+ LY K + +     ARKV DEMP+++ ++WT       
Sbjct: 180 QLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYV 239

Query: 207 ------------------------AMIVGYASVGDLVEAKTVF----------------- 225
                                   AMI GY   G +VEA  +F                 
Sbjct: 240 RRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTS 299

Query: 226 --------------------------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
                                     + +PE +    NAL+    K G++  AR++FD M
Sbjct: 300 VLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNM 359

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
             ++VVS+ T++ GY +   +  A  +FE  P ++ ++W  ++SGY   G  ++A+K+F+
Sbjct: 360 KSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFN 419

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M +++V+P ++     +SAC ++G+L     +  +L +   + S +    AL+ M A+C
Sbjct: 420 RMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNS-AGNALITMYARC 478

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A  +F  MPN D VS+ +MI  L  HGHGR+A+ LFDRM++EG+ PD ++F  VL
Sbjct: 479 GAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           TAC+H GLV++G+++FE+M+  + I+P  +HY  ++DLLGR G +  A +L+ +MP EP 
Sbjct: 539 TACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
            S W A+L  C+   D+ELG   A++LF++ PQ+ G+Y+LLSN Y+ A RW+D   VR  
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKL 658

Query: 560 MKERGLRKIPGCS 572
           M++RG++K PGCS
Sbjct: 659 MRDRGVKKEPGCS 671



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 43/348 (12%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + +VF  +      +WN ++ GY  +   +E F +F R++ E    D++TF  V+ AC++
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 149 VLSVREGTAIHAAVIRWG---VDEDVF-VGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
                 G ++H  + R     V E    V  +L+ LY K   I+ AR++FD M  ++VVS
Sbjct: 307 AGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVS 366

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           W  ++ GY     L +A  VF+ MP ++ +SW  ++ G V  G    A +LF+ M   +V
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDV 426

Query: 265 --VSYT-------------------------------------TMIDGYAKVGDMTSARS 285
               YT                                      +I  YA+ G +  A  
Sbjct: 427 KPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANL 486

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F   P+ D V+W+A+IS   Q+G   EA+++F  M ++ + PD    +++++AC+  G 
Sbjct: 487 MFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGL 546

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +D        + R    +        L+D+  + G +  A +L +TMP
Sbjct: 547 VDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP 594



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 182/403 (45%), Gaps = 62/403 (15%)

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGD 217
           AA   +  D      TSL+  Y     +  A   FD +P+  R+ V   A+I  YA    
Sbjct: 77  AAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASH 136

Query: 218 LVEAKTVF-------DLMPERSNVSWNALI--------------------------GGLV 244
              A  VF        L P+  + S+ AL+                          GG++
Sbjct: 137 AAPAVAVFRSLLASGSLRPD--DYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVL 194

Query: 245 KIGD--------------LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
            + +               R AR++ DEMP+++ +++TTM+ GY + GD+ +ARS+FE  
Sbjct: 195 SVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEV 254

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
             +  V W+A+ISGY  +G   EA ++F  M  + V  DEF   S++SAC+  G      
Sbjct: 255 DVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGK 314

Query: 351 WVDSYLSRSHMDL---SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
            V   ++R   +    +   V  ALV + +KCGN+  A  +F+ M ++DVVS+ +++ G 
Sbjct: 315 SVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGY 374

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
                  +AV +F+ M  +    +E+++ ++++   H G  ED  + F  M+    + P 
Sbjct: 375 VESSCLDKAVEVFEEMPYK----NELSWMVMVSGYVHGGFSEDALKLFNRMR-AEDVKPC 429

Query: 468 PEHYACMVDLLGRTGHLKSAYEL---LNSMPVEPHASAWGALL 507
              YA  +   G  G LK   +L   L  +  E   SA  AL+
Sbjct: 430 DYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALI 472



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 119/289 (41%), Gaps = 22/289 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  VF  +   N   W  ++ GY       +   +F R+  E+  P  YT+   I A
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISA 439

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C  + S++ G  +H  +++ G +     G +LI +Y +   +  A  +F  MP  + VSW
Sbjct: 440 CGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSW 499

Query: 206 TAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
            AMI      G   EA  +FD M      P+R  +S+  ++      G +    Q F+ M
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEGIYPDR--ISFLTVLTACNHSGLVDEGFQYFESM 557

Query: 260 PERNVV-----SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA-WSALISGYAQNGQPDE 313
                +      YT +ID   + G +  AR L +  P     + W A++SG   +G  + 
Sbjct: 558 KRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMEL 617

Query: 314 AVKIFSDMCSKNVQPD-EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
                  +     Q D  +IL+S  +  S  G      WVD+   R  M
Sbjct: 618 GAHAADQLFKMTPQHDGTYILLS--NTYSAAG-----RWVDAARVRKLM 659



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 44/245 (17%)

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISG 304
           GDL +A  LF   P    V+ T+++  YA  G + +A S F+A P   RD V  +A+IS 
Sbjct: 73  GDLPAAATLFRADP--CPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISA 130

Query: 305 YAQNGQPDEAVKIF-SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           YA+      AV +F S + S +++PD++   +L+SA   + N+ + +     L  S +  
Sbjct: 131 YARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQ--LQCSVLKS 188

Query: 364 SRAHVIA---ALVDMNAKCGNMDR---AAELFETMPNRDVVSYCSMIKGL---------- 407
               V++   ALV +  KC  ++    A ++ + MP++D +++ +M+ G           
Sbjct: 189 GAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAAR 248

Query: 408 --------------------SIH-GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
                                +H G   +A  LF RM+ E +  DE  FT VL+AC++ G
Sbjct: 249 SVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAG 308

Query: 447 LVEDG 451
               G
Sbjct: 309 FFAHG 313


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 315/552 (57%), Gaps = 25/552 (4%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYST 90
           SC+++A T  +  +      QVH+ +++ G ++D    ++LV  ++ +       +  ++
Sbjct: 206 SCVVNACTGSRNIEAG---RQVHAMVVRMGYDKDVFTANALVDMYMKM-----GRVDIAS 257

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            +F ++ + +   WN L+ G   N        + +++     VP+ +T   ++KACS   
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +   G  IH  +I+   D D ++G  L+D+Y K   +  ARKVFD M  R+++   A+I 
Sbjct: 318 AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALIS 377

Query: 211 GYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSA---RQL------FDEMP 260
           G +  G   EA ++F +L  E   V+   L   L     L +A   RQ+         + 
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF 437

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           + +VV+   +ID Y K   ++ A  +FE     D++A +++I+  +Q    + A+K+F +
Sbjct: 438 DAHVVN--GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFME 495

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  K ++PD F+L SL++AC+ +   +    V ++L +    +S A    ALV   AKCG
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCG 554

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +++ A   F ++P R VVS+ +MI GL+ HGHG++A+ LF RM+ EG+ P+ +  T VL 
Sbjct: 555 SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           AC+H GLV++  R+F +M+ ++ I  + EHY+CM+DLLGR G L  A EL+NSMP + +A
Sbjct: 615 ACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA 674

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           S WGALLGA +++ D ELG+L A +LF LEP+ +G++VLL+N YA+A  W +V  VR  M
Sbjct: 675 SIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLM 734

Query: 561 KERGLRKIPGCS 572
           K+  ++K P  S
Sbjct: 735 KDSNIKKEPAMS 746



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 246/554 (44%), Gaps = 50/554 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            +H+ ++K G     S   H IS       P   +  VF+ I +P    W++L+  YS N
Sbjct: 25  HLHASLLKSG--SLASFRNHLISFYSKCRRPCC-ARRVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                    F  +  E    +++  P+V+K    V   R G  +HA  +  G   DVFV 
Sbjct: 82  GLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVA 138

Query: 175 TSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
            +L+ +YG    +  AR+VF+E   ERN VSW  ++  Y       +A  VF  M     
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARS 285
           + +   ++ ++       ++ + RQ+   +     +++V +   ++D Y K+G +  A  
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASV 258

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE  PD DVV+W+ALISG   NG    A+++   M    + P+ F L S++ ACS  G 
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            DL   +  ++ +++ D S  ++   LVDM AK   +D A ++F+ M +RD++   ++I 
Sbjct: 319 FDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALIS 377

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC----------------------- 442
           G S  G   +A+SLF  +  EGL  +      VL +                        
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF 437

Query: 443 -SHV--GLVEDGWR--FFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSM- 494
            +HV  GL++  W+         V+    S +  AC  M+  L +  H + A +L   M 
Sbjct: 438 DAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEML 497

Query: 495 --PVEPHASAWGALLGACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNIYATADRWL 551
              +EP      +LL AC   S  E G+ V   L + +   +A +   L   YA      
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557

Query: 552 DVCLVRSKMKERGL 565
           D  L  S + ERG+
Sbjct: 558 DAELAFSSLPERGV 571



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 242/534 (45%), Gaps = 41/534 (7%)

Query: 4   IDEPNTPCKHKSCSSMLPNCS-----RSAPINF-----PKPSCLLSALTLIKKCKLQTHL 53
            DE   PC H S SS++   S     RSA   F         C   AL ++ KC     L
Sbjct: 60  FDEIPDPC-HVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL 118

Query: 54  H-QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP-NTFLWNTLLKGY 111
             QVH+  +  G   D   VA+ +   +     +  +  VFN   +  N   WN L+  Y
Sbjct: 119 GAQVHAMAMATGFGSD-VFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            +N +  +   +F  ++     P ++ F  V+ AC+   ++  G  +HA V+R G D+DV
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAKTVF 225
           F   +L+D+Y K   +  A  +F++MP+ +VVSW A+I G    G      +L+      
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMT 281
            L+P    +S  +++      G     RQ+   M + N  S       ++D YAK   + 
Sbjct: 298 GLVPNVFTLS--SILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            AR +F+    RD++  +ALISG +  G+ DEA+ +F ++  + +  +   L +++ + +
Sbjct: 356 DARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            +     +  V +   +    +  AHV+  L+D   KC  +  A  +FE   + D+++  
Sbjct: 416 SLEAASTTRQVHALAVKIGF-IFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF------ 455
           SMI  LS   HG  A+ LF  ML +GL PD    + +L AC+ +   E G +        
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           + M + +A       YA       + G ++ A    +S+P E    +W A++G 
Sbjct: 535 QFMSDAFAGNALVYTYA-------KCGSIEDAELAFSSLP-ERGVVSWSAMIGG 580



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 170/347 (48%), Gaps = 12/347 (3%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +HA++++ G          LI  Y K +   CAR+VFDE+P+   VSW++++  Y++
Sbjct: 23  GAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 215 VGDLVEAKTVFDLM-PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTT 269
            G    A   F  M  E    +  AL   L  + D R   Q+           +V     
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 270 MIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ++  Y   G M  AR +F EA  +R+ V+W+ L+S Y +N Q  +A+++F +M    +QP
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
            EF    +++AC+   N++    V + + R   D        ALVDM  K G +D A+ +
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD-KDVFTANALVDMYMKMGRVDIASVI 259

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE MP+ DVVS+ ++I G  ++GH  +A+ L  +M   GL P+    + +L ACS  G  
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTGHLKSAYELLNSM 494
           + G +    M  + A   S ++    +VD+  +   L  A ++ + M
Sbjct: 320 DLGRQIHGFM--IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L             QVH+H+IK+    D +   + +   ++    +  +  
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD-AFAGNALVYTYAKCGSIEDAEL 561

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F+ +       W+ ++ G +Q+        +F R++ E   P+  T   V+ AC+H   
Sbjct: 562 AFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGL 621

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V E      ++   +G+D      + +IDL G+  ++  A ++ + MP + N   W A++
Sbjct: 622 VDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALL 681

Query: 210 VGYASV------GDLVEAKTVFDLMPERSNV 234
            G + V      G L  A+ +F L PE+S  
Sbjct: 682 -GASRVHKDPELGKLA-AEKLFILEPEKSGT 710


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 300/530 (56%), Gaps = 18/530 (3%)

Query: 55  QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           QVH+ +++ G E+D    ++LV  ++ +       +  ++ +F ++ + +   WN L+ G
Sbjct: 223 QVHAMVVRMGYEKDVFTANALVDMYVKM-----GRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
              N        + +++     VP+ +    ++KAC+   +   G  IH  +I+   D D
Sbjct: 278 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 337

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMP 229
            ++G  L+D+Y K   +  A KVFD M  R+++ W A+I G +  G   EA ++F  L  
Sbjct: 338 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 397

Query: 230 ERSNVSWNALIGGLVKIGDLR--SARQLFDEMPER-----NVVSYTTMIDGYAKVGDMTS 282
           E   V+   L   L     L   SA +    + E+     +      +ID Y K   ++ 
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSD 457

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  +FE     D++A +++I+  +Q    + A+K+F +M  K ++PD F+L SL++AC+ 
Sbjct: 458 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +   +    V ++L +    +S A    ALV   AKCG+++ A   F ++P R VVS+ +
Sbjct: 518 LSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSA 576

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI GL+ HGHG++A+ LF RM+ EG+ P+ +  T VL AC+H GLV++  R+F +M+ ++
Sbjct: 577 MIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 636

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I  + EHY+CM+DLLGR G L  A EL+NSMP + +AS WGALLGA +++ D ELG+L 
Sbjct: 637 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLA 696

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A +LF LEP+ +G++VLL+N YA++  W +V  VR  MK+  ++K P  S
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMS 746



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 150/559 (26%), Positives = 249/559 (44%), Gaps = 60/559 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            +H++++K G     SL  H IS       P   +  VF+ I +P    W++L+  YS N
Sbjct: 25  HLHANLLKSGFLA--SLRNHLISFYSKCRRPCC-ARRVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                    F  +  E    +++  P+V+K    V   + G  +HA  +  G   DVFV 
Sbjct: 82  GLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVA 138

Query: 175 TSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
            +L+ +YG    +  AR+VFDE   ERN VSW  ++  Y       +A  VF  M     
Sbjct: 139 NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARS 285
           + +   ++ ++       ++ + RQ+   +     E++V +   ++D Y K+G +  A  
Sbjct: 199 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASV 258

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE  PD DVV+W+ALISG   NG    A+++   M S  + P+ F+L S++ AC+  G 
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 318

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            DL   +  ++ +++ D S  ++   LVDM AK   +D A ++F+ M +RD++ + ++I 
Sbjct: 319 FDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALIS 377

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC----------------------- 442
           G S  G   +A S+F  +  EGL  +      VL +                        
Sbjct: 378 GCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIF 437

Query: 443 -SHV--GLVEDGW---------RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
            +HV  GL++  W         R FE   +   I  +      M+  L +  H + A +L
Sbjct: 438 DAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTS-----MITALSQCDHGEGAIKL 492

Query: 491 LNSM---PVEPHASAWGALLGACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNIYAT 546
              M    +EP      +LL AC   S  E G+ V   L + +   +A +   L   YA 
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 547 ADRWLDVCLVRSKMKERGL 565
                D  L  S + ERG+
Sbjct: 553 CGSIEDAELAFSSLPERGV 571



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/532 (26%), Positives = 238/532 (44%), Gaps = 37/532 (6%)

Query: 4   IDEPNTPCKHKSCSSMLPNCS-----RSAPINF-----PKPSCLLSALTLIKKCKLQTHL 53
            DE   PC H S SS++   S     RSA   F         C   AL ++ KC     L
Sbjct: 60  FDEIPDPC-HVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL 118

Query: 54  H-QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP-NTFLWNTLLKGY 111
             QVH+  +  G   D   VA+ +   +     +  +  VF+   +  N   WN L+  Y
Sbjct: 119 GAQVHAMAMATGFGSD-VFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 177

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            +N +  +   +F  ++     P ++ F  V+ AC+   ++  G  +HA V+R G ++DV
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDV 237

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           F   +L+D+Y K   +  A  +F++MP+ +VVSW A+I G    G    A  +   M   
Sbjct: 238 FTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 297

Query: 232 SNVSWNALIGGLVK----IGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSA 283
             V    ++  ++K     G     RQ+   M + N  S       ++D YAK   +  A
Sbjct: 298 GLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F+    RD++ W+ALISG +  G+ DEA  IF  +  + +  +   L +++ + + +
Sbjct: 358 MKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASL 417

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
                +  V +   +    +  AHV+  L+D   KC  +  A  +FE   + D+++  SM
Sbjct: 418 EAASATRQVHALAEKIGF-IFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 476

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF------EA 457
           I  LS   HG  A+ LF  ML +GL PD    + +L AC+ +   E G +        + 
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           M + +A       YA       + G ++ A    +S+P E    +W A++G 
Sbjct: 537 MSDAFAGNALVYTYA-------KCGSIEDAELAFSSLP-ERGVVSWSAMIGG 580



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 176/363 (48%), Gaps = 13/363 (3%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +HA +++ G    +     LI  Y K +   CAR+VFDE+P+   VSW++++  Y++
Sbjct: 23  GAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 215 VGDLVEAKTVFDLM-PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTT 269
            G    A   F  M  E    +  AL   L  + D +   Q+           +V     
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANA 140

Query: 270 MIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ++  Y   G M  AR +F EA  +R+ V+W+ L+S Y +N Q  +A+++F +M    +QP
Sbjct: 141 LVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
            EF    +++AC+   N+D    V + + R   +        ALVDM  K G +D A+ +
Sbjct: 201 TEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE-KDVFTANALVDMYVKMGRVDIASVI 259

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE MP+ DVVS+ ++I G  ++GH  +A+ L  +M S GL P+    + +L AC+  G  
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAF 319

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           + G +    M  + A   S ++    +VD+  +   L  A ++ + M        W AL+
Sbjct: 320 DLGRQIHGFM--IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALI 376

Query: 508 GAC 510
             C
Sbjct: 377 SGC 379



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L             QVH+H+IK+    D +   + +   ++    +  +  
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD-AFAGNALVYTYAKCGSIEDAEL 561

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F+ +       W+ ++ G +Q+        +F R++ E   P+  T   V+ AC+H   
Sbjct: 562 AFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGL 621

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V E      ++   +G+D      + +IDL G+  ++  A ++ + MP + N   W A++
Sbjct: 622 VDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALL 681

Query: 210 VGYASV------GDLVEAKTVFDLMPERSNV 234
            G + V      G L  A+ +F L PE+S  
Sbjct: 682 -GASRVHKDPELGKLA-AEKLFILEPEKSGT 710


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 309/529 (58%), Gaps = 12/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H ++IK G + D +  A+ +   ++    L  +++VF+ I  P+   WN ++ G   +
Sbjct: 132 KIHGYLIKLGYDSD-AFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLH 190

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE-GTAIHAAVIRWGVDEDVFV 173
                   +   + +    P+ +T    +KAC+  +++RE G  +H+++I+  +  D F+
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAG-MALRELGRQLHSSLIKMDMGSDSFL 249

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-PERS 232
           G  LID+Y K   +  AR VF  MPER++++W A+I G++   +  EA ++F LM  E  
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309

Query: 233 NVSWNALIGGLVKIGDLRS---ARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
             +   L   L  I  L++    RQ+         E +     ++ID Y K G +  A  
Sbjct: 310 GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATR 369

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE +P  D+V +++L++ YAQ+GQ +EA++++ +M  + ++PD F+  SL++AC+ +  
Sbjct: 370 VFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            +    V  ++ +    +S      +LV+M AKCG+++ A+  F  +P R +VS+ +MI 
Sbjct: 430 YEQGKQVHVHILKFGF-MSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIG 488

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           GL+ HG+G++A+ LF +ML  G+ P+ +    VL AC+H GLV +   +F +M+ ++ I 
Sbjct: 489 GLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIE 548

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EHYACM+DLLGR G L++A EL+N MP + +A  WGALLGA +++ +I+LGE  A  
Sbjct: 549 PMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEM 608

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           L  LEP+ +G++VLL+NIYA+   W  V  VR  MK+  ++K PG S L
Sbjct: 609 LLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWL 657



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 237/495 (47%), Gaps = 32/495 (6%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           F  PS +L A T+ K   L     QVH  ++  G + D   VA+ + + ++       + 
Sbjct: 11  FAFPS-VLKACTVTKDLVLGK---QVHGIVVVTGFDSD-EFVANSLVILYAKCGGFGDAR 65

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           ++F+ I + +   WN L   Y  +    E  ++F  ++     P++++   +I  C+ + 
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
              +G  IH  +I+ G D D F   +L+D+Y K   +  A  VFDE+ + ++VSW A+I 
Sbjct: 126 DSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185

Query: 211 G------YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           G      +    +L+       + P    +S  + +     +      RQL   + + ++
Sbjct: 186 GCVLHEYHHRALELLREMNKSGMCPNMFTLS--SALKACAGMALRELGRQLHSSLIKMDM 243

Query: 265 VSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            S +     +ID Y+K   M  AR +F+  P+RD++AW+A+ISG++QN + +EA  +F  
Sbjct: 244 GSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPL 303

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M ++ +  ++  L +++ + + +    +   + +   +S  +    +V+ +L+D   KCG
Sbjct: 304 MHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN-YVVNSLIDTYGKCG 362

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +++ A  +FE  P  D+V + S++   +  G G +A+ L+  M   G+ PD    + +L 
Sbjct: 363 HVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN 422

Query: 441 ACSHVGLVEDGWRF------FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           AC+ +   E G +       F  M +++A          +V++  + G ++ A    + +
Sbjct: 423 ACASLSAYEQGKQVHVHILKFGFMSDIFA-------GNSLVNMYAKCGSIEDASCAFSRI 475

Query: 495 PVEPHASAWGALLGA 509
           PV    S W A++G 
Sbjct: 476 PVRGIVS-WSAMIGG 489



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 185/381 (48%), Gaps = 32/381 (8%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           +++ FP V+KAC+    +  G  +H  V+  G D D FV  SL+ LY K      AR +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLR 250
           D +P+R+VVSW A+   Y       EA ++F  M       +  S +++I     + D  
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 251 SARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             R++   +     + +  S   ++D YAKVG +  A S+F+     D+V+W+A+I+G  
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
            +     A+++  +M    + P+ F L S + AC+ +   +L   + S L +  M  S +
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG-SDS 247

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +   L+DM +KC +MD A  +F+ MP RD++++ ++I G S +    +A SLF  M +E
Sbjct: 248 FLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTE 307

Query: 427 GLTPDEVAFTIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           G+  ++   + VL + +           H   ++ G+ F   + N             ++
Sbjct: 308 GIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVN------------SLI 355

Query: 476 DLLGRTGHLKSAYELLNSMPV 496
           D  G+ GH++ A  +    P+
Sbjct: 356 DTYGKCGHVEDATRVFEESPI 376


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 315/552 (57%), Gaps = 25/552 (4%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYST 90
           SC+++A T  +  +      QVH+ +++ G ++D    ++LV  ++ +       +  ++
Sbjct: 206 SCVVNACTGSRNIEAG---RQVHAMVVRMGYDKDVFTANALVDMYMKM-----GRVDIAS 257

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            +F ++ + +   WN L+ G   N        + +++     VP+ +T   ++KACS   
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +   G  IH  +I+   D D ++G  L+D+Y K   +  ARKVFD M  R+++   A+I 
Sbjct: 318 AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALIS 377

Query: 211 GYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSA---RQL------FDEMP 260
           G +  G   EA ++F +L  E   V+   L   L     L +A   RQ+         + 
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF 437

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           + +VV+   +ID Y K   ++ A  +FE     D++A +++I+  +Q    + A+K+F +
Sbjct: 438 DAHVVN--GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFME 495

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  K ++PD F+L SL++AC+ +   +    V ++L +    +S A    ALV   AKCG
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCG 554

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +++ A   F ++P R VVS+ +MI GL+ HGHG++A+ LF RM+ EG+ P+ +  T VL 
Sbjct: 555 SIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLC 614

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           AC+H GLV++  R+F +M+ ++ I  + EHY+CM+DLLGR G L  A EL+NSMP + +A
Sbjct: 615 ACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANA 674

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           S WGALLGA +++ D ELG+L A +LF LEP+ +G++VLL+N YA+A  W +V  VR  M
Sbjct: 675 SIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLM 734

Query: 561 KERGLRKIPGCS 572
           K+  ++K P  S
Sbjct: 735 KDSNIKKEPAMS 746



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 148/554 (26%), Positives = 245/554 (44%), Gaps = 50/554 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            +H+ ++K G     S   H IS       P   +   F+ I +P    W++L+  YS N
Sbjct: 25  HLHASLLKSG--SLASFRNHLISFYSKCRRPCC-ARRFFDEIPDPCHVSWSSLVTAYSNN 81

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                    F  +  E    +++  P+V+K    V   R G  +HA  +  G   DVFV 
Sbjct: 82  GLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVA 138

Query: 175 TSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
            +L+ +YG    +  AR+VF+E   ERN VSW  ++  Y       +A  VF  M     
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARS 285
           + +   ++ ++       ++ + RQ+   +     +++V +   ++D Y K+G +  A  
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASV 258

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE  PD DVV+W+ALISG   NG    A+++   M    + P+ F L S++ ACS  G 
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            DL   +  ++ +++ D S  ++   LVDM AK   +D A ++F+ M +RD++   ++I 
Sbjct: 319 FDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALIS 377

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC----------------------- 442
           G S  G   +A+SLF  +  EGL  +      VL +                        
Sbjct: 378 GCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF 437

Query: 443 -SHV--GLVEDGWR--FFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSM- 494
            +HV  GL++  W+         V+    S +  AC  M+  L +  H + A +L   M 
Sbjct: 438 DAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEML 497

Query: 495 --PVEPHASAWGALLGACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNIYATADRWL 551
              +EP      +LL AC   S  E G+ V   L + +   +A +   L   YA      
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557

Query: 552 DVCLVRSKMKERGL 565
           D  L  S + ERG+
Sbjct: 558 DAELAFSSLPERGV 571



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 242/534 (45%), Gaps = 41/534 (7%)

Query: 4   IDEPNTPCKHKSCSSMLPNCS-----RSAPINF-----PKPSCLLSALTLIKKCKLQTHL 53
            DE   PC H S SS++   S     RSA   F         C   AL ++ KC     L
Sbjct: 60  FDEIPDPC-HVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL 118

Query: 54  H-QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP-NTFLWNTLLKGY 111
             QVH+  +  G   D   VA+ +   +     +  +  VFN   +  N   WN L+  Y
Sbjct: 119 GAQVHAMAMATGFGSD-VFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            +N +  +   +F  ++     P ++ F  V+ AC+   ++  G  +HA V+R G D+DV
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDV 237

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAKTVF 225
           F   +L+D+Y K   +  A  +F++MP+ +VVSW A+I G    G      +L+      
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMT 281
            L+P    +S  +++      G     RQ+   M + N  S       ++D YAK   + 
Sbjct: 298 GLVPNVFTLS--SILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            AR +F+    RD++  +ALISG +  G+ DEA+ +F ++  + +  +   L +++ + +
Sbjct: 356 DARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            +     +  V +   +    +  AHV+  L+D   KC  +  A  +FE   + D+++  
Sbjct: 416 SLEAASTTRQVHALAVKIGF-IFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF------ 455
           SMI  LS   HG  A+ LF  ML +GL PD    + +L AC+ +   E G +        
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           + M + +A       YA       + G ++ A    +S+P E    +W A++G 
Sbjct: 535 QFMSDAFAGNALVYTYA-------KCGSIEDAELAFSSLP-ERGVVSWSAMIGG 580



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 169/347 (48%), Gaps = 12/347 (3%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +HA++++ G          LI  Y K +   CAR+ FDE+P+   VSW++++  Y++
Sbjct: 23  GAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 215 VGDLVEAKTVFDLM-PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTT 269
            G    A   F  M  E    +  AL   L  + D R   Q+           +V     
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 270 MIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ++  Y   G M  AR +F EA  +R+ V+W+ L+S Y +N Q  +A+++F +M    +QP
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
            EF    +++AC+   N++    V + + R   D        ALVDM  K G +D A+ +
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD-KDVFTANALVDMYMKMGRVDIASVI 259

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE MP+ DVVS+ ++I G  ++GH  +A+ L  +M   GL P+    + +L ACS  G  
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTGHLKSAYELLNSM 494
           + G +    M  + A   S ++    +VD+  +   L  A ++ + M
Sbjct: 320 DLGRQIHGFM--IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L             QVH+H+IK+    D +   + +   ++    +  +  
Sbjct: 503 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD-AFAGNALVYTYAKCGSIEDAEL 561

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F+ +       W+ ++ G +Q+        +F R++ E   P+  T   V+ AC+H   
Sbjct: 562 AFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGL 621

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V E      ++   +G+D      + +IDL G+  ++  A ++ + MP + N   W A++
Sbjct: 622 VDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALL 681

Query: 210 VGYASV------GDLVEAKTVFDLMPERSNV 234
            G + V      G L  A+ +F L PE+S  
Sbjct: 682 -GASRVHKDPELGKLA-AEKLFILEPEKSGT 710


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 179/507 (35%), Positives = 284/507 (56%), Gaps = 25/507 (4%)

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           LC      LS S+    +I N      N L++   +  +  +     +R++ +E+ P + 
Sbjct: 29  LCSVALNNLSISSGAGAKISN------NQLIQSLCKEGKLKQA----LRVLSQESSPSQQ 78

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+ L+I  C H  S+ +G  +H  ++  G D+D F+ T LI +Y     +  ARKVFD+ 
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSW--NALIGGLVKIGDL 249
            +R +  W A+       G   E   ++  M       +R   ++   A +        L
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHL 198

Query: 250 RSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
              +++   +  R   S+    TT++D YA+ G +  A  +F   P R+VV+WSA+I+ Y
Sbjct: 199 TKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY 258

Query: 306 AQNGQPDEAVKIFSDMCS--KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           A+NG+  EA++ F +M +  K+  P+   +VS++ AC+ +  L+    +  Y+ R  +D 
Sbjct: 259 AKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLD- 317

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S   VI+ALV M  +CG +D    +F+ M +RDVVS+ S+I    +HG+GR+A+ +F+ M
Sbjct: 318 SILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEM 377

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
           L+ G +P  V F  VL ACSH GLVE+G R FE+M   + I P  EHYACMVDLLGR   
Sbjct: 378 LANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANR 437

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L  A +++  M  EP    WG+LLG+C+++ ++EL E  + RLF LEP+NAG+YVLL++I
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADI 497

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPG 570
           YA A  W +V  V+  ++ RGL+K+PG
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPG 524



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 192/402 (47%), Gaps = 22/402 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH HI+  G +QD  L    I +   L + + Y+  VF++      ++WN L +  +  
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSDLGS-VDYARKVFDKTRKRTIYVWNALFRALTLA 156

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC----SHVLSVREGTAIHAAVIRWGVDED 170
               EV  ++ ++ R     D++T+  V+KAC         + +G  IHA + R G +  
Sbjct: 157 GHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSH 216

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLMP 229
           V++ T+L+D+Y +   +  A  VF+ MP RNVVSW+AMI  YA  G   EA +T  ++M 
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMT 276

Query: 230 ERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDM 280
           E  + S N     +++     +  L   R +   +  R + S   +I      Y + G +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
              + +F+   DRDVV+W++LIS Y  +G   +A++IF +M +    P     VS++ AC
Sbjct: 337 DVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDV 397
           S  G ++    +   + R H    +    A +VD+  +   +D AA++ + M   P   V
Sbjct: 397 SHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
             + S++    IHG+   A     R+ +  L P      ++L
Sbjct: 457 --WGSLLGSCRIHGNVELAERASRRLFA--LEPKNAGNYVLL 494


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 182/539 (33%), Positives = 296/539 (54%), Gaps = 8/539 (1%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI-VNP 99
           L LI KC       Q+H+H++   L  +  +V    +      T + Y      +   + 
Sbjct: 13  LDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQFDWSL 72

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           ++F  N L+ GY+          I+   +R   VPD YTFP V+K+C+    + E    H
Sbjct: 73  SSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQFH 132

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           +  ++ G+  D++V  +L+ +Y    +   A KVF++M  R+VVSWT +I GY   G   
Sbjct: 133 SVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFN 192

Query: 220 EAKTVFDLMPERSNV-SWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGY 274
           EA ++F  M    NV ++ +++G   K+G L   + +    F  +    +V    ++D Y
Sbjct: 193 EAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMY 252

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K   +T AR +F+  P++D+++W+++I G  Q   P E++ +FS M +   +PD  IL 
Sbjct: 253 MKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILT 312

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S++SAC+ +G LD   WV  Y+   H      H+   LVDM AKCG +D A  +F  MP+
Sbjct: 313 SVLSACASLGLLDCGRWVHEYID-CHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPS 371

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           +++ ++ + I GL+I+G+G++A+  F+ ++  G  P+EV F  V TAC H GLV++G ++
Sbjct: 372 KNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKY 431

Query: 455 FEAMQN-VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           F  M + +Y + P  EHY CMVDLL R G +  A EL+ +MP+ P     GALL +   Y
Sbjct: 432 FNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTY 491

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++   + +   L  +E Q++G YVLLSN+YAT  +W +V  VR  MK++G+ K PG S
Sbjct: 492 GNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSS 550


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 194/558 (34%), Positives = 288/558 (51%), Gaps = 75/558 (13%)

Query: 15  SCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH 74
           + +S  P+ S S   N+     LLS+      CK    L Q+H+ II  G +  HS + H
Sbjct: 36  TAASEFPSLSSSTYTNYLHYPRLLSS------CKHLNPLLQIHAQIIVSGFKHHHS-ITH 88

Query: 75  FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134
            I+L +SL      + +VF+   NP+  LWN++                    IR     
Sbjct: 89  LINL-YSLFHKCDLARSVFDSTPNPSRILWNSM--------------------IRAYTRS 127

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
            +Y   L +  C               V + G++ DVF+G  L+D+Y K           
Sbjct: 128 KQYNEALEMYYC--------------MVEKGGLERDVFIGAGLVDMYSK----------- 162

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
                               +GDL  A+ VFD MP+R  V+WNA+I GL +  D   AR+
Sbjct: 163 --------------------MGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARR 202

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           +FD+M +++ VS+ TM+ GYA  G       LF+     +V  W+ +I+ Y QNG   EA
Sbjct: 203 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVT-WNVIIAAYMQNGHAKEA 261

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           +  F  M  +N  P+    VS++ A + +          + + +    LS   V  +L+D
Sbjct: 262 ISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF-LSNTLVGNSLID 320

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M AKCG +D + +LF  M ++D VS+ +M+ G ++HGHG +A++LF  M    +  D V+
Sbjct: 321 MYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 380

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           F  VL+AC H GLVE+G + F +M + Y I P  EHYACMVDLLGR G        +  M
Sbjct: 381 FVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVM 440

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
           PVEP A  WGALLG+C+++S+++LGE+  + L +LEP+N   +V+LS+IYA + RW D  
Sbjct: 441 PVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAG 500

Query: 555 LVRSKMKERGLRKIPGCS 572
             RSKM + GL+K PGCS
Sbjct: 501 KARSKMNDLGLKKTPGCS 518


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 308/550 (56%), Gaps = 21/550 (3%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYST 90
           SC+++A T  +         QVH+ +++ G E+D    ++LV  ++ +       +  ++
Sbjct: 113 SCVVNACTGSRNIDAG---RQVHAMVVRMGYEKDVFTANALVDMYVKM-----GRVDIAS 164

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            +F ++ + +   WN L+ G   N        + +++     VP+ +    ++KAC+   
Sbjct: 165 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAG 224

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +   G  IH  +I+   D D ++G  L+D+Y K   +  A KVFD M  R+++ W A+I 
Sbjct: 225 AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALIS 284

Query: 211 GYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLR--SARQLFDEMPER----- 262
           G +  G   EA ++F  L  E   V+   L   L     L   SA +    + E+     
Sbjct: 285 GCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIF 344

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           +      +ID Y K   ++ A  +FE     D++A +++I+  +Q    + A+K+F +M 
Sbjct: 345 DAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEML 404

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
            K ++PD F+L SL++AC+ +   +    V ++L +    +S A    ALV   AKCG++
Sbjct: 405 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNALVYTYAKCGSI 463

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           + A   F ++P R VVS+ +MI GL+ HGHG++A+ LF RM+ EG+ P+ +  T VL AC
Sbjct: 464 EDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCAC 523

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           +H GLV++  R+F +M+ ++ I  + EHY+CM+DLLGR G L  A EL+NSMP + +AS 
Sbjct: 524 NHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASV 583

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           WGALLGA +++ D ELG+L A +LF LEP+ +G++VLL+N YA++  W +V  VR  MK+
Sbjct: 584 WGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKD 643

Query: 563 RGLRKIPGCS 572
             ++K P  S
Sbjct: 644 SNIKKEPAMS 653



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 229/493 (46%), Gaps = 32/493 (6%)

Query: 36  CLLSALTLIKKCKLQTHLH-QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           C   AL ++ KC     L  QVH+  +  G   D   VA+ +   +     +  +  VF+
Sbjct: 8   CNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSD-VFVANALVAMYGGFGFMDDARRVFD 66

Query: 95  RIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
              +  N   WN L+  Y +N +  +   +F  ++     P ++ F  V+ AC+   ++ 
Sbjct: 67  EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNID 126

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG-- 211
            G  +HA V+R G ++DVF   +L+D+Y K   +  A  +F++MP+ +VVSW A+I G  
Sbjct: 127 AGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCV 186

Query: 212 -----YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
                + ++  L++ K+   L+P    +S  +++      G     RQ+   M + N  S
Sbjct: 187 LNGHDHRAIELLLQMKSS-GLVPNVFMLS--SILKACAGAGAFDLGRQIHGFMIKANADS 243

Query: 267 ----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
                  ++D YAK   +  A  +F+    RD++ W+ALISG +  G+ DEA  IF  + 
Sbjct: 244 DDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLR 303

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
            + +  +   L +++ + + +     +  V +   +    +  AHV+  L+D   KC  +
Sbjct: 304 KEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGF-IFDAHVVNGLIDSYWKCSCL 362

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
             A  +FE   + D+++  SMI  LS   HG  A+ LF  ML +GL PD    + +L AC
Sbjct: 363 SDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 422

Query: 443 SHVGLVEDGWRFF------EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
           + +   E G +        + M + +A       YA       + G ++ A    +S+P 
Sbjct: 423 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA-------KCGSIEDAELAFSSLP- 474

Query: 497 EPHASAWGALLGA 509
           E    +W A++G 
Sbjct: 475 ERGVVSWSAMIGG 487



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  L S L             QVH+H+IK+    D +   + +   ++    +  +  
Sbjct: 410 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD-AFAGNALVYTYAKCGSIEDAEL 468

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F+ +       W+ ++ G +Q+        +F R++ E   P+  T   V+ AC+H   
Sbjct: 469 AFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGL 528

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
           V E      ++   +G+D      + +IDL G+  ++  A ++ + MP + N   W A++
Sbjct: 529 VDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALL 588

Query: 210 VGYASV------GDLVEAKTVFDLMPERSNV 234
            G + V      G L  A+ +F L PE+S  
Sbjct: 589 -GASRVHKDPELGKLA-AEKLFILEPEKSGT 617


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 290/536 (54%), Gaps = 15/536 (2%)

Query: 48  KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           +L  H   VH   +  G   D  +    IS+  S    +  + AVF  + N     WN +
Sbjct: 122 RLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGD-VGAAEAVFGAMRNRTVVSWNAV 180

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           + G  +N        +F  +  +    D+ T   V+ AC+    +  G A+H  V   G+
Sbjct: 181 IAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGL 240

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFD 226
            + V V  +LID+YGK + +  AR+VFD    +++VVSWTAMI  Y       EA ++  
Sbjct: 241 GDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGC 300

Query: 227 LMPERSNVSWN---ALIGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTMIDGYAK 276
            M   S  +W     ++  L     + S +              + ++   T +ID YA+
Sbjct: 301 QM-LMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYAR 359

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G M   R   E    R    W+A +SGY  +G+  +A+++F  M +++V+PD   + S+
Sbjct: 360 CGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASI 418

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + A ++  +L     +  +L      L    +   L+D+ +K G++D A  LF+ +P +D
Sbjct: 419 LPAYAESADLKEGKNIHCFLLTLGF-LRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKD 477

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VV++ ++I G SIHGH R A+ L+DRM+  G  P+ V    +L ACSH G++++G + F+
Sbjct: 478 VVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFK 537

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+NV+ ++P+ EHY+C+VD+LGR G ++ A+ L+  MP EP  S WGALLGAC L+ ++
Sbjct: 538 DMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNV 597

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E GE+ A RLF+L+P+N GSYVLL NIYA ADRW DV  VR  M ERGL K PG S
Sbjct: 598 EFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLLKEPGSS 653



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 194/442 (43%), Gaps = 22/442 (4%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P     N+LL+ Y+      E   ++  +       D  TFP   KAC+ +   R G A+
Sbjct: 75  PPVSFSNSLLRSYTGLGCHREALAVYSAM----RAFDHLTFPFAAKACAGLRLGRHGRAV 130

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   +  G   D +V  +LI +Y    ++  A  VF  M  R VVSW A+I G    G  
Sbjct: 131 HCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYA 190

Query: 219 VEAKTVFDLMP------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----T 268
             A  VF  M       +R+ V   +++    +  DL + R +   + ++ +  Y     
Sbjct: 191 ERALEVFGEMAADGVGIDRATVV--SVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKN 248

Query: 269 TMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNV 326
            +ID Y K   +  AR +F+    D+DVV+W+A+I  Y  N +  EA+ +   M  S   
Sbjct: 249 ALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAA 308

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            P+   +V L+SAC+ + +   +    +   R  +  S   V  AL+D  A+CG M    
Sbjct: 309 WPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLK-SDIAVETALIDAYARCGKMKLMR 367

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
              E    R   ++ + + G ++ G  ++A+ LF RM++E + PD      +L A +   
Sbjct: 368 LTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESA 426

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            +++G +           + S E    ++D+  + G L +A+ L   +P E    AW  +
Sbjct: 427 DLKEG-KNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLP-EKDVVAWTTI 484

Query: 507 LGACKLYSDIELGELVANRLFE 528
           +    ++       L+ +R+ E
Sbjct: 485 IAGYSIHGHARTAILLYDRMVE 506


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 303/562 (53%), Gaps = 27/562 (4%)

Query: 27  APINFPKPSCLLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLC---- 79
           + INF K     +  T++K C    +L     VHS  I+ G E D      FIS C    
Sbjct: 324 SEINFSK----FTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDE-----FISCCLVDM 374

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +S       +  VF RI +P+   W+ ++    Q  +  E   +F R+     +P+++T 
Sbjct: 375 YSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTL 434

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             ++ A + +  +  G +IHA V ++G + D  V  +L+ +Y K   +    +VF+    
Sbjct: 435 ASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTN 494

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFD-LMPERSNVSWNALIGGL--------VKIGDLR 250
           R+++SW A++ G+           +F+ ++ E  N +    I  L        V +G   
Sbjct: 495 RDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 554

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
            A+ + + +   + V  T ++D YAK   +  A ++F     RD+ AW+ +++GYAQ+GQ
Sbjct: 555 HAQIVKNSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ 613

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            ++AVK F  M  + V+P+EF L S +S CS++  LD    + S   ++        V +
Sbjct: 614 GEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS-GDMFVAS 672

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           ALVDM AKCG ++ A  +F+ + +RD VS+ ++I G S HG G +A+  F+ ML EG  P
Sbjct: 673 ALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVP 732

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           DEV F  VL+ACSH+GL+E+G + F ++  +Y I P+ EHYACMVD+LGR G        
Sbjct: 733 DEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESF 792

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  M +  +   W  +LGACK++ +IE GE  A +LFELEP+   +Y+LLSN++A    W
Sbjct: 793 IEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMW 852

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
            DV  VR+ M  RG++K PGCS
Sbjct: 853 DDVTNVRALMSTRGVKKEPGCS 874



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 225/465 (48%), Gaps = 21/465 (4%)

Query: 3   KIDEPNTPCKHKSCSSMLPNCSRSAPI----NFPKPSCLLSALTLIKKCKLQTHLHQ--- 55
           K+  PN P  + +  + +P       I    +F     L     +++ C  +  L++   
Sbjct: 92  KLSSPNRP--NSTPGNKIPETVEKKRIWRGLDFDSKGRLRQYSGMLRTCASKGDLNEGKA 149

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  +IK G+  D  L    +++ ++     +Y+  VF  I   +   W  L+ G+    
Sbjct: 150 IHGQVIKSGINPDSHLWNSLVNV-YAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG 208

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
                  +F  + RE    +++T+   +KACS  L +  G  +HA  I+ G   D+FVG+
Sbjct: 209 YGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGS 268

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L+DLY K  E+  A +VF  MP++N VSW A++ G+A +GD  +   +F  M       
Sbjct: 269 ALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINF 328

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMP-----ERNVVSYTTMIDGYAKVGDMTSARSL 286
           S  + + ++ G    G+LR A Q+   +      E +      ++D Y+K G    A  +
Sbjct: 329 SKFTLSTVLKGCANSGNLR-AGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    D DVV+WSA+I+   Q GQ  EA ++F  M    V P++F L SL+SA + +G+L
Sbjct: 388 FVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDL 447

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                + + + +   +     V  ALV M  K G++     +FE   NRD++S+ +++ G
Sbjct: 448 YYGESIHACVCKYGFEYDNT-VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSG 506

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              +      + +F++ML+EG  P+   F  +L +CS +  V+ G
Sbjct: 507 FHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 551


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 291/535 (54%), Gaps = 25/535 (4%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
             +H+ ++K+GL  D  + +  + + ++       +  +F+ + + +   WNT++  Y Q
Sbjct: 126 QMIHTCLVKEGLMVDIVVGSSLVGM-YAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQ 184

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           + +F E    F  + R    PD  T    I +C+ +L +  G  IH  ++  G   D FV
Sbjct: 185 SGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFV 244

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS- 232
             +L+D+YGK  ++  A +VF++MP + VV+W +MI GY   GD +    +F  M     
Sbjct: 245 SAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGV 304

Query: 233 --------------NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                         + S   L G  V    +R+  Q        ++   ++++D Y K G
Sbjct: 305 KPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQ-------PDIFLNSSLMDLYFKCG 357

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            + SA ++F+  P    V+W+ +ISGY   G+  +A+++F +M    V+PD     S+++
Sbjct: 358 KVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLA 417

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           ACSQ+  L+    + + +   ++  +   V+ AL+DM AKCG ++ A  +F+ +P RD+V
Sbjct: 418 ACSQLAALEKGREIHNLIVERNLGNNEV-VMGALLDMYAKCGAVEEAFGVFKCLPERDLV 476

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+ SMI     HG   +A+ LF  ML   + PD V F  +L+ACSH GLV+DG   F  M
Sbjct: 477 SWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQM 536

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALLGACKLYSDIE 517
            NVY I+P  EHY+C++ LLGR G L  AYE+L S P +         L  AC+L+ +++
Sbjct: 537 INVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLD 596

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LG  +A  L + +P ++ +Y++LSN+YA+  +W +V +VRSKMK+ GL+K PGCS
Sbjct: 597 LGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCS 651



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 239/477 (50%), Gaps = 18/477 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF-LWNTLLKGYSQN 114
           +H  ++  GL+ D  +  + ISL  S      Y+  VF+ I NP    L N L+ GY++N
Sbjct: 25  LHQKVVTLGLQNDVYVCKNLISLYVS-CNLFDYAKNVFDVIENPFEISLCNGLMAGYTRN 83

Query: 115 SRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
             + E   +F +L+    + PD YT+P V+KAC  +  V  G  IH  +++ G+  D+ V
Sbjct: 84  CMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVV 143

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---- 229
           G+SL+ +Y K  E  CA K+FDEMP+++V  W  +I  Y   G   EA   F +M     
Sbjct: 144 GSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGF 203

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN--VVSYTT--MIDGYAKVGDMTSARS 285
           E  +V+    I    ++ DL   R++  E+      + S+ +  ++D Y K G +  A  
Sbjct: 204 EPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIE 263

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +FE  P++ VVAW+++I+GY   G     +++F  M S+ V+P    L S + ACSQ   
Sbjct: 264 VFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQ 323

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L    +V  Y+ R+ +      + ++L+D+  KCG ++ A  +F+ MP    VS+  MI 
Sbjct: 324 LLEGKFVHGYIIRNRIQ-PDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMIS 382

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G    G    A+ LF  M    + PD + FT VL ACS +  +E G R    +     + 
Sbjct: 383 GYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKG-REIHNLIVERNLG 441

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC----KLYSDIEL 518
            +      ++D+  + G ++ A+ +   +P E    +W +++ A     ++Y  +EL
Sbjct: 442 NNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRVYEALEL 497



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 197/432 (45%), Gaps = 48/432 (11%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++A  +  S+++G  +H  V+  G+  DV+V  +LI LY        A+ VFD +    
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68

Query: 202 VVSW-TAMIVGYASVGDLVEAKTVFD-------LMPERSNV-SWNALIGGL--VKIGDLR 250
            +S    ++ GY       EA  +FD       L P+     S     GGL  V +G + 
Sbjct: 69  EISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMI 128

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
               L  E    ++V  ++++  YAK  +   A  LF+  PD+DV  W+ +IS Y Q+G+
Sbjct: 129 HT-CLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGK 187

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            +EA++ F  M     +PD   + + +S+C+++ +LD    +   L  S   +  + V A
Sbjct: 188 FEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMD-SFVSA 246

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           ALVDM  KCG ++ A E+FE MPN+ VV++ SMI G    G G   + LF RM SEG+ P
Sbjct: 247 ALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKP 306

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
                T  L ACS    + +G +F         I P     + ++DL  + G ++SA  +
Sbjct: 307 TLTTLTSTLMACSQSAQLLEG-KFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETI 365

Query: 491 LNSMP----------------------------------VEPHASAWGALLGACKLYSDI 516
              MP                                  VEP A  + ++L AC   + +
Sbjct: 366 FKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAAL 425

Query: 517 ELGELVANRLFE 528
           E G  + N + E
Sbjct: 426 EKGREIHNLIVE 437


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 290/504 (57%), Gaps = 21/504 (4%)

Query: 90  TAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           T +FNR V+  + F WN+++   +++    E    F  + +    P + +FP  IKACS 
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G   H     +G   D+FV ++LI +Y    ++  ARKVFDE+P+RN+VSWT+M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALI---GGLVKIGDLRS---ARQLFDEMP-- 260
           I GY   G+ ++A ++F  +    N   +A+     GLV +    S   A+ L + +   
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 261 ------ERNVVSYTTMIDGYAKVGD--MTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                 +R V    T++D YAK G+  +  AR +F+   D+D V++++++S YAQ+G  +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 313 EAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA- 370
           EA ++F  +  +K V  +   L +++ A S  G L +   +   + R  M L    ++  
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGT 326

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +++DM  KCG ++ A + F+ M N++V S+ +MI G  +HGH  +A+ LF  M+  G+ P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           + + F  VL ACSH GL  +GWR+F AM+  + + P  EHY CMVDLLGR G L+ AY+L
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  M ++P +  W +LL AC+++ ++EL E+   RLFEL+  N G Y+LLS+IYA A RW
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506

Query: 551 LDVCLVRSKMKERGLRKIPGCSSL 574
            DV  VR  MK RGL K PG S L
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLL 530



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 192/375 (51%), Gaps = 21/375 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q H      G + D   V+  + + +S    L  +  VF+ I   N   W ++++GY  N
Sbjct: 97  QTHQQAFVFGYQSD-IFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTF------PLVIKACSHVLSVREGTAIHAAVIRWGVD 168
              ++  ++F  L+ +E   D   F        VI ACS V +     +IH+ VI+ G D
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215

Query: 169 EDVFVGTSLIDLYGKRKE--ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
             V VG +L+D Y K  E  ++ ARK+FD++ +++ VS+ +++  YA  G   EA  VF 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 227 LMPERSNVSWNALIGGLVKI-----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKV 277
            + +   V++NA+    V +     G LR  + + D++     E +V+  T++ID Y K 
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G + +AR  F+   +++V +W+A+I+GY  +G   +A+++F  M    V+P+    VS++
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 338 SACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR- 395
           +ACS  G +++   W ++   R  ++    H    +VD+  + G + +A +L + M  + 
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQRMKMKP 454

Query: 396 DVVSYCSMIKGLSIH 410
           D + + S++    IH
Sbjct: 455 DSIIWSSLLAACRIH 469



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 142/279 (50%), Gaps = 12/279 (4%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNR 95
           L+S ++   +   +     +HS +IK+G ++  S+    + +        ++ +  +F++
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVRE 154
           IV+ +   +N+++  Y+Q+    E F +F RL++ + V  +  T   V+ A SH  ++R 
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH  VIR G+++DV VGTS+ID+Y K   +  ARK FD M  +NV SWTAMI GY  
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365

Query: 215 VGDLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS---- 266
            G   +A  +F  M +   R N +++ +++      G      + F+ M  R  V     
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425

Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
            Y  M+D   + G +  A  L +    + D + WS+L++
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 169/487 (34%), Positives = 275/487 (56%), Gaps = 17/487 (3%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N F +N ++ G+  N    + F  + R+     +PDK+TFP V++AC   + VR+   IH
Sbjct: 41  NVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTFPCVVRACCEFMEVRK---IH 97

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             + + G++ +VFVG++L++ Y K      A KVF+E+PER+VV W AMI GY  +G L 
Sbjct: 98  GCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLN 157

Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERN----VVSYTTMI 271
           +A  VF  M E     S  +  +++  L  +GD+ + R +   + +      V     +I
Sbjct: 158 KAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALI 217

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K      A  +FE   ++D+ +W+++IS + Q    D  +++F  M    V PD  
Sbjct: 218 DMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVI 277

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH----VIAALVDMNAKCGNMDRAAE 387
            + +++ ACS +  L     +  Y+  + +  +       +  A++DM AKCG M  A  
Sbjct: 278 TITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADI 337

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ M N+DV S+  MI G ++HG+G +A+ +F RM    + PD V F  VL+ACSH G 
Sbjct: 338 IFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGF 397

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V  G  F   M+  + ++P+ EHY C++D+LGR GHL  AY+L   +P+E +   W ALL
Sbjct: 398 VHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALL 457

Query: 508 GACKLYSDIELGELVANRLFELEPQN--AGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           GAC+L+ + ELG +V  ++ +LEP++  +GSY+L+S++Y    R+ +   VR  MKE+ +
Sbjct: 458 GACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNV 517

Query: 566 RKIPGCS 572
           +K PGCS
Sbjct: 518 KKTPGCS 524



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 178/389 (45%), Gaps = 25/389 (6%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           +++ C     + ++H  + K GLE +   V   +   +        +  VF  +   +  
Sbjct: 83  VVRACCEFMEVRKIHGCLFKMGLELN-VFVGSALVNTYLKVDGTEDAEKVFEELPERDVV 141

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LWN ++ GY++     +   +F R+  E     ++T   ++   + +  +  G AIH  V
Sbjct: 142 LWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIV 201

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            + G    V V  +LID+YGK K    A  +F+ + E+++ SW ++I  +    D     
Sbjct: 202 TKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTL 261

Query: 223 TVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEM---------PERNVVSY 267
            +F  M      P+   ++  A++     +  L   R++   M            +V+  
Sbjct: 262 RLFGKMLGSRVLPDV--ITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLN 319

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
             ++D YAK G M +A  +F+   ++DV +W+ +I GYA +G   EA+ +F  MC   ++
Sbjct: 320 NAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIK 379

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI---AALVDMNAKCGNMDR 384
           PD    V ++SACS  G +       S+L+R  ++      I     ++DM  + G++  
Sbjct: 380 PDVVTFVGVLSACSHAGFVHQGR---SFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGE 436

Query: 385 AAELFETMPNRD-VVSYCSMIKGLSIHGH 412
           A +L + +P  D ++ + +++    +HG+
Sbjct: 437 AYDLAQRIPLEDNLILWMALLGACRLHGN 465



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 40/286 (13%)

Query: 204 SWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP-- 260
           S T++I  Y+    + EA  VF D   ER+  ++NA+I G V  G      Q +  M   
Sbjct: 12  SITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSV 71

Query: 261 ----------------------------------ERNVVSYTTMIDGYAKVGDMTSARSL 286
                                             E NV   + +++ Y KV     A  +
Sbjct: 72  GVMPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKV 131

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE  P+RDVV W+A+I+GY + G  ++AV +F  M  + +    F   S++S  + +G++
Sbjct: 132 FEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDI 191

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           +    +   +++  M  S    ++ AL+DM  KC + + A  +FE +  +D+ S+ S+I 
Sbjct: 192 NNGRAIHGIVTK--MGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIIS 249

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
                      + LF +ML   + PD +  T VL ACSH+  +  G
Sbjct: 250 AHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHG 295



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 129/254 (50%), Gaps = 25/254 (9%)

Query: 266 SYTTMIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           S T++I+ Y++   M  A  +F +   +R+V A++A+I+G+  NG   +  + +  M S 
Sbjct: 12  SITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSV 71

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V PD+F    ++ AC +   +     +   L +  ++L+   V +ALV+   K    + 
Sbjct: 72  GVMPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELN-VFVGSALVNTYLKVDGTED 127

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A ++FE +P RDVV + +MI G +  GH  +AV +F RM  EG++      T +L+  + 
Sbjct: 128 AEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTS 187

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYAC------MVDLLGRTGHLKSA---YELLNSMP 495
           +G + +G       + ++ IV    + +C      ++D+ G+  H + A   +E++N   
Sbjct: 188 MGDINNG-------RAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMIN--- 237

Query: 496 VEPHASAWGALLGA 509
            E    +W +++ A
Sbjct: 238 -EKDLFSWNSIISA 250


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 303/551 (54%), Gaps = 13/551 (2%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
            P+ S LL    LI +C       Q+ + +I + L +D  ++   ++     A   SYS+
Sbjct: 3   LPEKSVLLE---LISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSS 59

Query: 91  AVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
            + + I +  ++F +NTLL  Y+   +       +   +     PD +TFP V KAC   
Sbjct: 60  VILHSIRSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKF 119

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +REG  IH  V + G  +D++V  SL+  YG   E   A KVF EMP R+VVSWT +I
Sbjct: 120 SGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGII 179

Query: 210 VGYASVGDLVEAKTVFDLMPERSNV-SWNALIGGLVKIGDLRSARQLFDEMPER-NVVSY 267
            G+   G   EA   F  M    N+ ++  ++    ++G L   + +   + +R +++S 
Sbjct: 180 TGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISL 239

Query: 268 TT---MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CS 323
            T   +ID Y K   ++ A  +F     +D V+W+++ISG     +  EA+ +FS M  S
Sbjct: 240 ETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTS 299

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             ++PD  IL S++SAC+ +G +D   WV  Y+  + +     H+  A+VDM AKCG ++
Sbjct: 300 SGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWD-THIGTAIVDMYAKCGYIE 358

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A E+F  + +++V ++ +++ GL+IHGHG +++  F+ M+  G  P+ V F   L AC 
Sbjct: 359 TALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACC 418

Query: 444 HVGLVEDGWRFFEAMQNV-YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           H GLV++G R+F  M++  Y + P  EHY CM+DLL R G L  A EL+ +MPV+P    
Sbjct: 419 HTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRI 478

Query: 503 WGALLGACKLYSDI-ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            GA+L ACK    + EL + + +   ++E +++G YVLLSNI+A   RW DV  +R  MK
Sbjct: 479 CGAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMK 538

Query: 562 ERGLRKIPGCS 572
            +G+ K+PG S
Sbjct: 539 VKGISKVPGSS 549


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/482 (36%), Positives = 264/482 (54%), Gaps = 41/482 (8%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIF--VRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            T  +N L++  + +S   +   +F  +R       PD YT+PL +K+CS    +  G  
Sbjct: 85  TTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQ 144

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH+AV +  +D +V+V  S I +Y +      A +VFD MP R+VVSW AMI G+A VG 
Sbjct: 145 IHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGL 204

Query: 218 LVEAKTVFDL-------MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
              A  VF         MP+   ++      G  K  D+R  R++FD M  + ++S    
Sbjct: 205 FDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELIS---- 260

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
                                      W+A+++ YA N    +AV++F  M    V+PD 
Sbjct: 261 ---------------------------WNAMLAVYANNEFHVKAVELFMLMEKDEVEPDS 293

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             L +++  C ++    +   +   + R +M      +  AL+DM A CG +  A E+F+
Sbjct: 294 ITLATVLPPCGELSAFSVGKRIHEIIKRKNM-CPNLLLENALMDMYASCGCLKDAREIFD 352

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M  RDV+S+ S+I     HGHGR+AV LF++ML +GL PD +AF  VL ACSH GL+ D
Sbjct: 353 LMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLAD 412

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F++M + Y I+P  EHY CMVDLLGR G +  AY+ + +M +EP+   WGALL AC
Sbjct: 413 GKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQAC 472

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++S++++G + A+ LF L P+  G YVLLSN+YA A RW DV  VRS M  +G++K PG
Sbjct: 473 RIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPG 532

Query: 571 CS 572
            S
Sbjct: 533 TS 534


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/572 (32%), Positives = 302/572 (52%), Gaps = 75/572 (13%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+++C     L Q   VH+ I+K G++ +  L    +S+ ++    L+ +  VF+ I + 
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSM-YAKCGSLTDARRVFDGIRDR 160

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   W  +++ +   ++ +E +  +  +      PDK TF  ++ A ++   ++ G  +H
Sbjct: 161 NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             + + G++ +  VGTSL+ +Y K                                GD+ 
Sbjct: 221 MEIAKAGLELEPRVGTSLVGMYAK-------------------------------CGDIS 249

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDG-- 273
           +A+ +FD +PE++ V+W  LI G  + G +  A +L ++M +     N ++YT+++ G  
Sbjct: 250 KAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309

Query: 274 ---------------------------------YAKVGDMTSARSLFEAAPDRDVVAWSA 300
                                            Y K G +  AR LF   P RDVV W+A
Sbjct: 310 TPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTA 369

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +++GYAQ G  DEA+ +F  M  + ++PD+    S +++CS    L     +   L  + 
Sbjct: 370 MVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAG 429

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
             L   ++ +ALV M AKCG+MD A  +F  M  R+VV++ +MI G + HG  R+A+  F
Sbjct: 430 YSLD-VYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYF 488

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           ++M  +G+ PD+V FT VL+AC+HVGLVE+G + F +M   Y I P  EHY+C VDLLGR
Sbjct: 489 EQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 548

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            GHL+ A  ++ +MP +P  S WGALL AC+++SD+E GE  A  + +L+P + G+YV L
Sbjct: 549 AGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVAL 608

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           SNIYA A R+ D   VR  M++R + K PG S
Sbjct: 609 SNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQS 640


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/383 (41%), Positives = 249/383 (65%), Gaps = 1/383 (0%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR +FD+MPERNVVS+T M+ G A  G++  A+ +FD MP R+ VSW A+I G V    L
Sbjct: 129 ARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNML 188

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             AR+LF+ MPE+NVV+ T MI GY K GD+ +AR LF+    +DV++W+A+ISGY  NG
Sbjct: 189 EEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNG 248

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             +EA K++  M  + ++PD+  L++L++ACS +  L       + + ++ ++ S   + 
Sbjct: 249 LGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLE-SSISIC 307

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            AL+ M +KCGN+D +  +F ++ ++D+VS+ ++I   + HG  ++ ++LF  M   GL 
Sbjct: 308 NALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLI 367

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           P+++ F  +L+AC H G V++  + F+ M + YAI P  EHYAC+VD+L R G L+ A  
Sbjct: 368 PNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACS 427

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MP E   + WG LL A + + +++LGEL A  L   + +++G+YV+LSNIYA A  
Sbjct: 428 YIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGM 487

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W +V  VRS+MKE+G++K PG S
Sbjct: 488 WGEVNRVRSQMKEKGVKKQPGHS 510



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/275 (38%), Positives = 154/275 (56%), Gaps = 40/275 (14%)

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           L  L+   +++  AR +FD+MP RNV+SW ++I G  + GDL  A   F   P R+  SW
Sbjct: 54  LTALWRAGRDLPAARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASW 113

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NA++ GLV++G +  AR LFD+MPERNVVSYTTM+DG A+ G++ SAR LF+A P R++V
Sbjct: 114 NAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLV 173

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+A+ISGY  N   +EA K+F  M  KNV            AC+               
Sbjct: 174 SWAAMISGYVDNNMLEEARKLFEAMPEKNV-----------VACT--------------- 207

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
                         A++    K G++  A  LF+ +  +DV+S+ ++I G   +G G +A
Sbjct: 208 --------------AMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEA 253

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
             L+  ML EG+ PD+     +LTACS + L+  G
Sbjct: 254 TKLYIIMLREGIKPDQATLIALLTACSSLALLRQG 288



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 27/262 (10%)

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK-IFSD 320
           R +V     I   A+ GD+ +AR +F+A P RD V+W+AL++   + G+   A + +F D
Sbjct: 14  RLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDD 73

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M S+NV        S+++ C   G+L  ++   +   R ++  S   ++A LV    + G
Sbjct: 74  MPSRNV----ISWNSIIAGCLAHGDLAAASAYFARAPRRNV-ASWNAMLAGLV----RLG 124

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +M+ A  LF+ MP R+VVSY +M+ GL+  G    A  LFD M +  L    V++  +++
Sbjct: 125 SMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNL----VSWAAMIS 180

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSAYELLNSMPVEP 498
                 ++E+  + FEAM       P     AC   + G  + G L++A  L + +  + 
Sbjct: 181 GYVDNNMLEEARKLFEAM-------PEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKD 233

Query: 499 HASAWGALLGACKLYSDIELGE 520
             S W A++     Y    LGE
Sbjct: 234 VIS-WNAIISG---YVHNGLGE 251



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 19/197 (9%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY--- 88
           P  + L++ LT      L       H+ +IK  LE         IS+C++L T  S    
Sbjct: 267 PDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESS-------ISICNALMTMYSKCGN 319

Query: 89  ---STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
              S  VF  + + +   WNT++  Y+Q+ R+ +V  +F  +     +P+  TF  ++ A
Sbjct: 320 VDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSA 379

Query: 146 CSHVLSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP---ERN 201
           C H   V E   +   +  ++ +         ++D+  +  ++  A     EMP   E+N
Sbjct: 380 CGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKN 439

Query: 202 VVSWTAMIVGYASVGDL 218
           V  W  ++    + G++
Sbjct: 440 V--WGTLLCASQTHGNV 454


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/533 (32%), Positives = 299/533 (56%), Gaps = 18/533 (3%)

Query: 51  THLHQVHSHIIKKGLE---QDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
            H  ++H+ ++K G E   Q ++L+  + + C  + + L     VF  I + +   WN++
Sbjct: 282 NHGRELHAALLKCGTEFNIQCNALLVMY-ARCGWVDSALR----VFREIGDKDYISWNSM 336

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           L  Y QN  + E    F  +++    PD      ++ A  H+  +  G  +HA  ++  +
Sbjct: 337 LSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRL 396

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D D+ +  +L+D+Y K   + C+ +VFD M  ++ VSWT +I  YA      EA   F  
Sbjct: 397 DSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFR- 455

Query: 228 MPERSNVSWNALI--------GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
             ++  +  + ++         GL  I  L+            +++    +ID Y + G+
Sbjct: 456 TAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGE 515

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  A ++FE    +D+V W+++++ +A+NG   EAV +F  M +  +QPD   LV ++ A
Sbjct: 516 VCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGA 575

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
            + + +L     +  +L R    +  A V+++LVDM + CG+M+ A ++F+    +DVV 
Sbjct: 576 IAGLSSLTKGKEIHGFLIRGKFPVEGA-VVSSLVDMYSGCGSMNYALKVFDEAKCKDVVL 634

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI    +HGHG+QA+ +F RML  G++PD V+F  +L ACSH  LV++G  + + M 
Sbjct: 635 WTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMV 694

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           + Y + P  EHYAC+VDLLGR+G  + AY+ + SMP+EP +  W ALLGAC+++ + EL 
Sbjct: 695 SKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELA 754

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +  ++L ELEP N G+YVL+SN++A   +W +V  +R+KM E+GLRK P CS
Sbjct: 755 MIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACS 807



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 205/414 (49%), Gaps = 23/414 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSY 88
           P  +C++S L+ +       +  +VH++ +K+ L+ D  +    + +   C+S+      
Sbjct: 363 PDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVEC---- 418

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           S  VF+R+   +   W T++  Y+Q+SR+ E    F    +E    D      +++ACS 
Sbjct: 419 SARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSG 478

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + S+     +H+  IR G+  D+ +   +ID+YG+  E+  A  +F+ + ++++V+WT+M
Sbjct: 479 LKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSM 537

Query: 209 IVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLF-----DEM 259
           +  +A  G L EA  +F  M     +  +V+   ++G +  +  L   +++       + 
Sbjct: 538 VNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKF 597

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P    V  ++++D Y+  G M  A  +F+ A  +DVV W+A+I+    +G   +A+ IF 
Sbjct: 598 PVEGAV-VSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFK 656

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSN-WVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            M    V PD    ++L+ ACS    +D    ++D  +S+  +   + H  A +VD+  +
Sbjct: 657 RMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHY-ACVVDLLGR 715

Query: 379 CGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
            G  + A +  ++MP     V +C+++    IH +   A+   D++L   L PD
Sbjct: 716 SGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLE--LEPD 767



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/556 (22%), Positives = 258/556 (46%), Gaps = 57/556 (10%)

Query: 26  SAPINFPKP-SCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHS 81
           S P+    P  C L+  +++K C  +       +VH   +K GL++  +LVA+ +   ++
Sbjct: 153 SEPVAGAAPDGCTLA--SVLKACGAEGDGRCGSEVHGLAVKSGLDRS-TLVANALVGMYA 209

Query: 82  LATPLSYSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
               L  +  VF  + +      WN+ + G  QN  F+E   +F R+  +    + YT  
Sbjct: 210 KCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTV 269

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            V++ C+ +  +  G  +HAA+++ G + ++    +L+ +Y +   +  A +VF E+ ++
Sbjct: 270 GVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDK 328

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLF 256
           + +SW +M+  Y       EA   F  M +      +    +L+  +  +G L + R++ 
Sbjct: 329 DYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVH 388

Query: 257 DEMPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
               ++ + S      T++D Y K   +  +  +F+    +D V+W+ +I+ YAQ+ +  
Sbjct: 389 AYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYS 448

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH-MDLSRAHVIAA 371
           EA+  F     + ++ D  ++ S++ ACS + ++ L   V SY  R+  +DL   + I  
Sbjct: 449 EAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRI-- 506

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
            +D+  +CG +  A  +FE +  +D+V++ SM+   + +G   +AV+LF +ML+ G+ PD
Sbjct: 507 -IDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPD 565

Query: 432 EVAFTIVLTACSHVGLVEDGWRF---------------FEAMQNVYAIVPSPEH------ 470
            VA   +L A + +  +  G                    ++ ++Y+   S  +      
Sbjct: 566 SVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFD 625

Query: 471 ---------YACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLYSDIEL 518
                    +  M++  G  GH K A  +   M    V P   ++ ALL AC     ++ 
Sbjct: 626 EAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDE 685

Query: 519 GELVANRL---FELEP 531
           G+   + +   ++L+P
Sbjct: 686 GKFYLDMMVSKYKLQP 701



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 18/342 (5%)

Query: 126 RLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV---DEDVFVGTSLIDLYG 182
           R  R  A P    +  V+   +   +V EG  +HA  +  G    D+  F+ T L+ +YG
Sbjct: 45  RSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYG 104

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA---- 238
           K   +  A ++FD MP R V SW A+I    S G   EA  V+  M     V+  A    
Sbjct: 105 KCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGC 164

Query: 239 LIGGLVKI----GDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
            +  ++K     GD R   ++         +R+ +    ++  YAK G + SA  +FE  
Sbjct: 165 TLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWM 224

Query: 291 PD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            D RDV +W++ ISG  QNG   EA+ +F  M S     + +  V ++  C+++  L+  
Sbjct: 225 RDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG 284

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             + + L +   + +      AL+ M A+CG +D A  +F  + ++D +S+ SM+     
Sbjct: 285 RELHAALLKCGTEFNIQ--CNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQ 342

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +    +A+  F  M+  G  PD      +L+A  H+G + +G
Sbjct: 343 NRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 133/289 (46%), Gaps = 23/289 (7%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--- 324
           T ++  Y K G +  A  LF+  P R V +W+ALI     +G   EAV ++  M +    
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 325 -NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
               PD   L S++ AC   G+    + V     +S +D S   V  ALV M AKCG +D
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTL-VANALVGMYAKCGLLD 215

Query: 384 RAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
            A  +FE M + RDV S+ S I G   +G   +A+ LF RM S+G + +      VL  C
Sbjct: 216 SALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHA 500
           + +  +  G     A+        +  +  C  ++ +  R G + SA  +   +  + + 
Sbjct: 276 AELAQLNHGRELHAALLK----CGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYI 331

Query: 501 SAWGALLGAC----KLYSDI--ELGELVANRLFELEPQNAGSYVLLSNI 543
           S W ++L +C    +LY++     GE+V N      P +A    LLS +
Sbjct: 332 S-WNSML-SCYVQNRLYAEAIDFFGEMVQN---GFNPDHACIVSLLSAV 375


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 299/556 (53%), Gaps = 41/556 (7%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           ++K C   +HL     +H+H++K   + +  +    + + +     L  +  VF  +   
Sbjct: 59  VLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDM-YVKCGRLEDAHNVFVEMPVR 117

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
           +   WN +L G++Q S F++  +  +R +R   + PD  T  L+I +   V S+    A+
Sbjct: 118 DIASWNAMLLGFAQ-SGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAV 176

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVG 216
           ++  IR GV  DV V  +LI  Y K   +  A  +FDE+    R+VVSW +MI  YA+  
Sbjct: 177 YSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFE 236

Query: 217 DLVEAKTVFDLM------PERSNV--------SWNALIGGL------VKIGDLRSARQLF 256
             V+A   +  M      P+ S +           AL  GL      VK+G         
Sbjct: 237 KHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLG--------- 287

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
               + +V    T+I  Y+K GD+ SAR LF    D+  V+W+ +IS YA+ G   EA+ 
Sbjct: 288 ---CDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMT 344

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F+ M +   +PD   +++L+S C Q G L+L  W+D+Y   + +      V  AL+DM 
Sbjct: 345 LFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLK-DNVVVCNALIDMY 403

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCG  + A ELF TM NR VVS+ +MI   +++G  + A+ LF  ML  G+ P+ + F 
Sbjct: 404 AKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFL 463

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            VL AC+H GLVE G   F  M   Y I P  +HY+CMVDLLGR GHL+ A E++ SMP 
Sbjct: 464 AVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPF 523

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           EP +  W ALL ACKL+  +E+G+ V+ +LFELEPQ A  YV ++NIYA+A+ W  V  +
Sbjct: 524 EPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAI 583

Query: 557 RSKMKERGLRKIPGCS 572
           R  MK   +RK PG S
Sbjct: 584 RRNMKYLQVRKSPGQS 599



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 209/438 (47%), Gaps = 37/438 (8%)

Query: 102 FLWNTLLK-----GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           F WN+  +     G++QN+       +F ++ +    P+  TFP V+KAC+ +  +R   
Sbjct: 19  FTWNSNFRHLVNQGHAQNA-----LILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQ 73

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IHA V++     ++FV T+ +D+Y K   +  A  VF EMP R++ SW AM++G+A  G
Sbjct: 74  IIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSG 133

Query: 217 DLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDE----MPERNVVS 266
            L     +   M      P+   V    LI  ++++  L S   ++          +V  
Sbjct: 134 FLDRLSCLLRHMRLSGIRPDAVTVL--LLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSV 191

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
             T+I  Y+K G++ SA +LF+      R VV+W+++I+ YA   +  +AV  +  M   
Sbjct: 192 ANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDG 251

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
              PD   +++L+S+C Q   L     V S+  +   D S   V+  L+ M +KCG++  
Sbjct: 252 GFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCD-SDVCVVNTLICMYSKCGDVHS 310

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  LF  M ++  VS+  MI   +  G+  +A++LF+ M + G  PD V    +++ C  
Sbjct: 311 ARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQ 370

Query: 445 VGLVE-----DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
            G +E     D +     +++   +  +      ++D+  + G    A EL  +M     
Sbjct: 371 TGALELGKWIDNYSINNGLKDNVVVCNA------LIDMYAKCGGFNDAKELFYTMANRTV 424

Query: 500 ASAWGALLGACKLYSDIE 517
            S W  ++ AC L  D++
Sbjct: 425 VS-WTTMITACALNGDVK 441


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 270/445 (60%), Gaps = 15/445 (3%)

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
           LV+   +++ +    ++IH   ++ G +  +FV  +LI +Y    ++  A+K+FD M +R
Sbjct: 29  LVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDR 88

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-------GDLRSAR 253
           ++VSW  +I GY+      E   +FD M   +N+  +A+   +VKI       GD   A 
Sbjct: 89  DLVSWNTLICGYSQYNKYKEVLRLFDAMTA-ANIKADAVT--MVKIILACSHLGDWEFAD 145

Query: 254 QLFDEMPERN----VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
            +   + E N    V    T+ID Y ++G++T+AR LF+  P RDV++W+++I+GY+Q  
Sbjct: 146 SMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQAS 205

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           Q  +AVK+F +M +  V+PD+  + S++SAC+ +G LD+  W   +  R H   +  +V 
Sbjct: 206 QFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDV-GWAVHHYIRRHGVQADIYVG 264

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            +L+DM  KCG +++A E+F  M ++D VS+ S+I GL+++G    A+ LF +ML EG+ 
Sbjct: 265 NSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQ 324

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           P    F  +L AC+H GLV  G  +FE+M++V+ +VP+ +HY C+VDLL R+G++  AYE
Sbjct: 325 PTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYE 384

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MP+ P    W  LL ACKL+ ++ L E+   RL EL+P ++G+YVLLSN YA  DR
Sbjct: 385 FIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDR 444

Query: 550 WLDVCLVRSKMKERGLRKIPGCSSL 574
           W D   +R  M++  ++K  G SS+
Sbjct: 445 WDDAMKMRELMEDSDVQKPSGSSSI 469



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 217/446 (48%), Gaps = 19/446 (4%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           P+ L+ ALT        T    +H H +K G E  +  V++ +   +++   L ++  +F
Sbjct: 26  PAALVVALT--TNINASTISSSIHVHALKLGFES-YLFVSNALIHMYAMCGQLGFAQKMF 82

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           + +++ +   WNTL+ GYSQ +++ EV  +F  +       D  T   +I ACSH+    
Sbjct: 83  DGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE 142

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
              ++   +    ++ DV++G +LID+YG+   ++ ARK+FD MP+R+V+SWT+MI GY+
Sbjct: 143 FADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYS 202

Query: 214 SVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
                 +A  +F  M      P++  V+  +++     +G L     +   +    V + 
Sbjct: 203 QASQFSDAVKLFQEMMAAKVKPDKVTVA--SVLSACAHLGKLDVGWAVHHYIRRHGVQAD 260

Query: 267 ---YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
                ++ID Y K G +  A  +F    D+D V+W+++ISG A NG  + A+ +FS M  
Sbjct: 261 IYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLR 320

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + VQP     V ++ AC+  G ++        +   H  +        +VD+ ++ GN+D
Sbjct: 321 EGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNID 380

Query: 384 RAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTA 441
           +A E  + MP   DVV +  ++    +HG+   A     R+L   L P D   + ++   
Sbjct: 381 KAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLE--LDPCDSGNYVLLSNT 438

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPS 467
            + V   +D  +  E M++     PS
Sbjct: 439 YAGVDRWDDAMKMRELMEDSDVQKPS 464


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/527 (32%), Positives = 292/527 (55%), Gaps = 41/527 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + ++  +F  +   +   WN ++   S++ R  E   + V +  +   PD  T+   + A
Sbjct: 241 VDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTA 300

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + S+  G  +H  VIR     D +V +++++LY K      A++VF  + +RN VSW
Sbjct: 301 CARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSW 360

Query: 206 TAMIVGYASVGDLVEAKTVFDLMP------------------------------------ 229
           T +I G+   G   E+  +F+ M                                     
Sbjct: 361 TVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLK 420

Query: 230 ---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
               R+ V  N+LI    K G+L++A  +F+ M ER++VS+T MI  Y++VG++  AR  
Sbjct: 421 SGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREF 480

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGN 345
           F+    R+V+ W+A++  Y Q+G  ++ +K++SDM + K+V PD    V+L   C+ +G 
Sbjct: 481 FDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGA 540

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
             L + +  +  +  + L  + V+ A++ M +KCG +  A + F+ +  +D+VS+ +MI 
Sbjct: 541 NKLGDQIIGHTVKVGLILDTS-VVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMIT 599

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G S HG G+QA+ +FD +L++G  PD +++  VL+ CSH GLVE+G  +F+ M+  + I 
Sbjct: 600 GYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNIS 659

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH++CMVDLLGR GHL  A  L++ MP++P A  WGALL ACK + + +L EL A  
Sbjct: 660 PGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKH 719

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LF+L+   +G Y+LL+ +YA A +  D   VR  M+++G++K PG S
Sbjct: 720 LFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYS 766



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 198/422 (46%), Gaps = 42/422 (9%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  +   S+LT   +        Q+H  +I+     D  + +  + L ++       +  
Sbjct: 289 PDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVEL-YAKCGCFKEAKR 347

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ + + N+  W  L+ G+ Q   F E   +F ++  E    D++    +I  C + + 
Sbjct: 348 VFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMD 407

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G+ +H+  ++ G    V V  SLI +Y K   +  A  +F+ M ER++VSWT MI  
Sbjct: 408 ICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITA 467

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-PERNV----VS 266
           Y+ VG++ +A+  FD M  R+ ++WNA++G  ++ G      +++ +M  E++V    V+
Sbjct: 468 YSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVT 527

Query: 267 YTTMIDG-----------------------------------YAKVGDMTSARSLFEAAP 291
           Y T+  G                                   Y+K G ++ AR  F+   
Sbjct: 528 YVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLS 587

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
            +D+V+W+A+I+GY+Q+G   +A++IF D+ +K  +PD    V+++S CS  G ++   +
Sbjct: 588 RKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKF 647

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS-YCSMIKGLSIH 410
               + R H         + +VD+  + G++  A  L + MP +     + +++     H
Sbjct: 648 YFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTH 707

Query: 411 GH 412
           G+
Sbjct: 708 GN 709



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 202/422 (47%), Gaps = 47/422 (11%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIK 144
           LS +  +F R+   +   WNT++ GY Q+ +F+    IFV + +  +++P+ +TF  V+K
Sbjct: 108 LSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMK 167

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           +C  +        +   + ++   +D  V T+L+D+  +   +  A K F  +    ++ 
Sbjct: 168 SCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIIC 227

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
             +M+VGYA    +  A  +F  MPER  VSWN +I  L K G +R A  +  +M  + V
Sbjct: 228 RNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGV 287

Query: 265 ----VSYTT-----------------------------------MIDGYAKVGDMTSARS 285
                +YT+                                   M++ YAK G    A+ 
Sbjct: 288 RPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKR 347

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F +  DR+ V+W+ LI G+ Q G   E+V++F+ M ++ +  D+F L +L+S C    +
Sbjct: 348 VFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMD 407

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           + L + + S   +S    +RA V++ +L+ M AKCGN+  A  +F  M  RD+VS+  MI
Sbjct: 408 ICLGSQLHSLCLKSGH--TRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMI 465

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
              S  G+  +A   FD M     T + + +  +L A    G  EDG + +  M     +
Sbjct: 466 TAYSQVGNIAKAREFFDDM----STRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521

Query: 465 VP 466
           +P
Sbjct: 522 IP 523



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 154/315 (48%), Gaps = 46/315 (14%)

Query: 237 NALIGGLVKIGDLRSARQLF-DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N L+   +  G L  AR L  DE+ E NV+++  M++GYAK+G ++ A  LF   P RDV
Sbjct: 64  NTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV 123

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVG----NLDLSN 350
            +W+ ++SGY Q+GQ   A+ IF  M  + +  P+ F    +M +C  +G     L L  
Sbjct: 124 ASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG 183

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA------------------------ 386
            +  + S+   D     V  ALVDM  +CG MD A+                        
Sbjct: 184 LLSKFDSQDDPD-----VQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKS 238

Query: 387 -------ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
                  E+F++MP RDVVS+  +I  LS  G  R+A+ +   M  +G+ PD   +T  L
Sbjct: 239 HGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSL 298

Query: 440 TACSHVGLVEDGWRF-FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           TAC+ +  +E G +   + ++N+  I   P   + MV+L  + G  K A  + +S+  + 
Sbjct: 299 TACARLSSLEWGKQLHVQVIRNLPHI--DPYVASAMVELYAKCGCFKEAKRVFSSLR-DR 355

Query: 499 HASAWGALLGACKLY 513
           ++ +W  L+G    Y
Sbjct: 356 NSVSWTVLIGGFLQY 370



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 191/403 (47%), Gaps = 58/403 (14%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           +V     +++ Y K   +S A ++F  MP R+V SW  ++ GY   G  + A  +F  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 230 ERSN-----------------VSWN-----------------------ALIGGLVKIGDL 249
           +  +                 + W+                       AL+  LV+ G +
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
             A + F  +    ++   +M+ GYAK   +  A  +F++ P+RDVV+W+ +IS  +++G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS--HMDLSRAH 367
           +  EA+ +  DM  K V+PD     S ++AC+++ +L+    +   + R+  H+D    +
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHID---PY 327

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V +A+V++ AKCG    A  +F ++ +R+ VS+  +I G   +G   ++V LF++M +E 
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL 387

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFE---AMQNVYAIVPSPEHYACMVDLLGRTGHL 484
           +  D+ A   +++ C +   +  G +         +  A+V S      ++ +  + G+L
Sbjct: 388 MAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNS----LISMYAKCGNL 443

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
           ++A EL+ +   E    +W  ++ A   YS  ++G +   R F
Sbjct: 444 QNA-ELIFNFMAERDIVSWTGMITA---YS--QVGNIAKAREF 480



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 13/182 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+  H +K GL  D S+V   I++ +S    +S +   F+ +   +   WN ++ GYSQ+
Sbjct: 546 QIIGHTVKVGLILDTSVVNAVITM-YSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQH 604

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   IF  ++ + A PD  ++  V+  CSH   V EG      + R   D ++  G
Sbjct: 605 GMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKR---DHNISPG 661

Query: 175 ----TSLIDLYGKRKEISCARKVFDEMPERNVVS-WTAMIVGYASVG--DLVE--AKTVF 225
               + ++DL G+   +  A+ + DEMP +     W A++    + G  DL E  AK +F
Sbjct: 662 LEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLF 721

Query: 226 DL 227
           DL
Sbjct: 722 DL 723


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 296/587 (50%), Gaps = 91/587 (15%)

Query: 71  LVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130
           + AH  +   +LA  + ++T +  R    +T  +N ++ GYS N+       +F  L+R 
Sbjct: 88  IAAHSSAGNSNLAREIFFATPLGIR----DTVCYNAMITGYSHNNDGFGAIELFRDLLRN 143

Query: 131 EAVPDKYTFPLVIKACSHVLS-VREGTAIHAAVIRWG----------------------- 166
              PD +TF  V+ A + ++   ++   IH AV++ G                       
Sbjct: 144 GFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPL 203

Query: 167 -----------------VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
                             + D    T++I  Y +  E+  AR+  D M E+ VV+W AMI
Sbjct: 204 VSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMI 263

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSW--------------------------------- 236
            GY   G  +EA  +F  M     + W                                 
Sbjct: 264 SGYVHHGFFLEALEMFRKM-YLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEP 322

Query: 237 -----------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
                      NAL     K G +  ARQ+F++MP +++VS+  ++ GY   G +  A+S
Sbjct: 323 RPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKS 382

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            FE  P+R+++ W+ +ISG AQNG  +E++K+F+ M S+  +P ++     + AC+ +  
Sbjct: 383 FFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAA 442

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L     + + L R   D S      AL+ M AKCG ++ A  LF TMP  D VS+ +MI 
Sbjct: 443 LMHGRQLHAQLVRLGFD-SSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIA 501

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
            L  HGHG QA+ LF+ ML E + PD + F  VL+ CSH GLVE+G R+F++M  +Y I 
Sbjct: 502 ALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGIC 561

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  +HYA M+DLL R G    A +++ +MPVEP    W ALL  C+++ +++LG   A R
Sbjct: 562 PGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAER 621

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LFEL PQ+ G+YVLLSN+YAT  RW DV  VR  M+++G++K PGCS
Sbjct: 622 LFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCS 668



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 112/484 (23%), Positives = 197/484 (40%), Gaps = 121/484 (25%)

Query: 144 KACSH-VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           + C H  +S      +HA +I  G     ++   LID+Y K  ++  A  +FDE+ + ++
Sbjct: 22  QCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDI 81

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           V+ T +I  ++S G+   A+ +F   P   R  V +NA+I G     D   A +LF ++ 
Sbjct: 82  VARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLL 141

Query: 261 ERNV----VSYTTMIDGYAKVGD------------------------------------- 279
                    ++T+++   A + +                                     
Sbjct: 142 RNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASS 201

Query: 280 --------MTSARSLFEAAPDRDVVAWSALISGYAQNGQPD------------------- 312
                   M +AR LF+   +RD ++W+ +I+GY +NG+ D                   
Sbjct: 202 PLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNA 261

Query: 313 ------------EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
                       EA+++F  M    +Q DEF   S++SAC+  G       V +Y+ R+ 
Sbjct: 262 MISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTE 321

Query: 361 ----MDLSRAHVIAALVDMNAKCGNMDRAAE----------------------------- 387
               +D S + V  AL  +  KCG +D A +                             
Sbjct: 322 PRPSLDFSLS-VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEA 380

Query: 388 --LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
              FE MP R+++++  MI GL+ +G G +++ LF+RM SEG  P + AF   + AC+ +
Sbjct: 381 KSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWL 440

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
             +  G R   A         S      ++ +  + G +++A+ L  +MP     S W A
Sbjct: 441 AALMHG-RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS-WNA 498

Query: 506 LLGA 509
           ++ A
Sbjct: 499 MIAA 502



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 149/337 (44%), Gaps = 32/337 (9%)

Query: 32  PKPSCLLS-----AL-TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           P+PS   S     AL TL  KC       QV + +  K L   +++++ +++     A  
Sbjct: 322 PRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVN-----AGR 376

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +  + + F  +   N   W  ++ G +QN    E   +F R+  E   P  Y F   I A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + ++  G  +HA ++R G D  +  G +LI +Y K   +  A  +F  MP  + VSW
Sbjct: 437 CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSW 496

Query: 206 TAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALI-----GGLVKIGD--LRSA 252
            AMI      G   +A  +F+LM      P+R  +++  ++      GLV+ G    +S 
Sbjct: 497 NAMIAALGQHGHGAQALELFELMLKEDILPDR--ITFLTVLSTCSHAGLVEEGHRYFKSM 554

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQP 311
             L+   P  +   Y  MID   + G  + A+ + E  P +     W AL++G   +G  
Sbjct: 555 SGLYGICPGED--HYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNM 612

Query: 312 DEAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGNLD 347
           D  ++    +     Q D  ++L+S M A   VG  D
Sbjct: 613 DLGIQAAERLFELMPQHDGTYVLLSNMYA--TVGRWD 647


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/536 (34%), Positives = 289/536 (53%), Gaps = 15/536 (2%)

Query: 48  KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           +L  H   VH   +  G   D  +    IS+  S    +  + AVF  + N     WN +
Sbjct: 122 RLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGD-VGAAEAVFGAMRNRTVVSWNAV 180

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           + G  +N        +F  +  +    D+ T   V+ AC+    +  G A+H  V   G+
Sbjct: 181 IAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGL 240

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFD 226
            + V V  +LID+YGK + +  AR+VFD    +++VVSWTAMI  Y       EA ++  
Sbjct: 241 GDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGC 300

Query: 227 LMPERSNVSWN---ALIGGLVKIGDLRSARQ-------LFDEMPERNVVSYTTMIDGYAK 276
            M   S  +W     ++  L     + S +              + ++   T +ID YA+
Sbjct: 301 QML-MSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYAR 359

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G M   R   E    R    W+A +SGY  +G+  +A+++F  M +++V+PD   + S+
Sbjct: 360 CGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASI 418

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + A ++  +L     +  +L      L    +   L+D+ +K G++D A  LF+ +P +D
Sbjct: 419 LPAYAESADLKEGKNIHCFLLTLGF-LRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKD 477

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           VV++ ++I G  IHGH R A+ L+DRM+  G  P+ V    +L ACSH G++++G + F+
Sbjct: 478 VVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFK 537

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M+NV+ ++P+ EHY+C+VD+LGR G ++ A+ L+  MP EP  S WGALLGAC L+ ++
Sbjct: 538 DMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNV 597

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E GE+ A RLF+L+P+N GSYVLL NIYA ADRW DV  VR  M ERGL K PG S
Sbjct: 598 EFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLLKEPGSS 653



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 194/442 (43%), Gaps = 22/442 (4%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P     N+LL+ Y+      E   ++  +       D  TFP   KAC+ +   R G A+
Sbjct: 75  PPVSFSNSLLRSYTGLGCHREALAVYSAM----RAFDHLTFPFAAKACAGLRLGRHGRAV 130

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   +  G   D +V  +LI +Y    ++  A  VF  M  R VVSW A+I G    G  
Sbjct: 131 HCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYA 190

Query: 219 VEAKTVFDLMP------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----T 268
             A  VF  M       +R+ V   +++    +  DL + R +   + ++ +  Y     
Sbjct: 191 ERALEVFGEMAADGVGIDRATVV--SVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKN 248

Query: 269 TMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNV 326
            +ID Y K   +  AR +F+    D+DVV+W+A+I  Y  N +  EA+ +   M  S   
Sbjct: 249 ALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAA 308

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            P+   +V L+SAC+ + +   +    +   R  +  S   V  AL+D  A+CG M    
Sbjct: 309 WPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLK-SDIAVETALIDAYARCGKMKLMR 367

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
              E    R   ++ + + G ++ G  ++A+ LF RM++E + PD      +L A +   
Sbjct: 368 LTLERGSWR-AETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESA 426

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            +++G +           + S E    ++D+  + G L +A+ L   +P E    AW  +
Sbjct: 427 DLKEG-KNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLP-EKDVVAWTTI 484

Query: 507 LGACKLYSDIELGELVANRLFE 528
           +    ++       L+ +R+ E
Sbjct: 485 IAGYGIHGHARTAILLYDRMVE 506


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/557 (31%), Positives = 304/557 (54%), Gaps = 18/557 (3%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYS 89
           +P   C  +A       +  +    +   ++K G L+ D  +    I +       L  +
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             VF ++   N   W  ++    Q     E   +F+ +I     PD++T   VI AC+++
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANM 284

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCARKVFDEMPERNVVSWT 206
             +  G  +H+  IR G+  D  VG  LI++Y K      +  ARK+FD++ + NV SWT
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 207 AMIVGYASVG-------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           AMI GY   G       DL     +  ++P  ++ ++++ +     +  LR   Q+F   
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIP--NHFTFSSTLKACANLAALRIGEQVFTHA 402

Query: 260 PERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            +    S      ++I  YA+ G +  AR  F+   ++++++++ +I  YA+N   +EA+
Sbjct: 403 VKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEAL 462

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           ++F+++  + +    F   SL+S  + +G +     + + + +S + L+++ V  AL+ M
Sbjct: 463 ELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQS-VCNALISM 521

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            ++CGN++ A ++FE M +R+V+S+ S+I G + HG   QA+ LF +ML EG+ P+ V +
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTY 581

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             VL+ACSHVGLV +GW+ F++M   + ++P  EHYACMVD+LGR+G L  A + +NSMP
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMP 641

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
            +  A  W   LGAC+++ ++ELG+  A  + E EP +  +Y+LLSN+YA+  +W +V  
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSN 701

Query: 556 VRSKMKERGLRKIPGCS 572
           +R  MKE+ L K  GCS
Sbjct: 702 IRKAMKEKNLIKEAGCS 718



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/528 (24%), Positives = 247/528 (46%), Gaps = 40/528 (7%)

Query: 4   IDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKK 63
           I E N    HK+ S++     + +  +    S  L      +   + T    VH  + + 
Sbjct: 39  IQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGT---LVHEKLTQS 95

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFT 122
            L+ D   +   ISL +S       +T++F  + +    + W+ ++  ++ N+       
Sbjct: 96  DLQLDSVTLNSLISL-YSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALL 154

Query: 123 IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLY 181
            FV +I     P++Y F    +ACS    V  G +I   V++ G +  DV VG  LID++
Sbjct: 155 TFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMF 214

Query: 182 GK-RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNV 234
            K R ++  A KVF++MPERN V+WT MI      G   EA  +F  M      P+R  +
Sbjct: 215 VKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTL 274

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVV----SYTTMIDGYAKV---GDMTSARSLF 287
           S   +I     +  L   +QL  +     +         +I+ YAK    G M +AR +F
Sbjct: 275 S--GVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 288 EAAPDRDVVAWSALISGYAQNGQPD-EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           +   D +V +W+A+I+GY Q G  D EA+ +F  M   +V P+ F   S + AC+ +  L
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            +   V ++  +  +  S  + +A +L+ M A+ G +D A + F+ +  ++++SY ++I 
Sbjct: 393 RIGEQVFTHAVK--LGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
             + + +  +A+ LF+ +  +G+      F  +L+  + +G +  G       + ++A V
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG-------EQIHARV 503

Query: 466 PSP----EHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                      C  ++ +  R G+++SA+++   M  + +  +W +++
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSII 550



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 177/409 (43%), Gaps = 80/409 (19%)

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F    NPN  L   L++  + N R  +  +    ++ + + PD  T+ L +K C    S 
Sbjct: 25  FPTFTNPNP-LTGRLIQEIN-NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVG 211
             GT +H  + +  +  D     SLI LY K  +   A  +F  M   R+++SW+AM+  
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSC 142

Query: 212 YA----------SVGDLVE-------------------------AKTVFDLMPERSNVSW 236
           +A          +  D++E                           ++F  + +   +  
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQS 202

Query: 237 NALIG-GLVKI-----GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           +  +G GL+ +     GDL SA ++F++MPERN V+                        
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVT------------------------ 238

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
                  W+ +I+   Q G   EA+ +F +M     +PD F L  ++SAC+ +  L L  
Sbjct: 239 -------WTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQ 291

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKC---GNMDRAAELFETMPNRDVVSYCSMIKG- 406
            + S   R  + L R  V   L++M AKC   G+M  A ++F+ + + +V S+ +MI G 
Sbjct: 292 QLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +   G+  +A+ LF  M+   + P+   F+  L AC+++  +  G + F
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/492 (36%), Positives = 287/492 (58%), Gaps = 10/492 (2%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP--DKYTFP 140
           A  ++ +  VF+ + + +   WN LL    +  R         R + +EA+P  D  ++ 
Sbjct: 28  AGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRH---HLPAARRLFDEAMPSRDVVSWN 84

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            +I  C     +   +A  A   +  V     +   L+ L G+  +   A ++F EMP+R
Sbjct: 85  SIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRL-GRADD---ADRLFGEMPKR 140

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           NVVS+T M+ G A  G++  A+ VFD MP+R+ VSW A+I G V+ G    A +LF+ MP
Sbjct: 141 NVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMP 200

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
           E+NVV+ T MI  Y K GD+ SAR LF+    +DV++W+ +I+GY  NG  +EA+++ + 
Sbjct: 201 EKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAV 260

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  + V+PD   L+++++ACS +  L       +   ++ ++ S      AL+ M +KCG
Sbjct: 261 MFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLE-SGISFSNALMTMYSKCG 319

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           N+  +  +F  +  +D+VS+ ++I   + HG  ++ ++LF  M   GL PD++ F  VL+
Sbjct: 320 NVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLS 379

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           AC HVG V+   + F+ M + YAI P  EHYAC+VD+L R G L+ A   +  MP+E   
Sbjct: 380 ACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEK 439

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           + WG+LLGAC+++ +++LGEL A  L + + +++G YV+LSNIYA A  W  V  VR +M
Sbjct: 440 NVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQM 499

Query: 561 KERGLRKIPGCS 572
           KERG++K PG S
Sbjct: 500 KERGVKKQPGYS 511



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 153/308 (49%), Gaps = 74/308 (24%)

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAM----------------------------- 208
           I    +  +++ AR+VFD MP R+VVSW A+                             
Sbjct: 22  ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVV 81

Query: 209 -----IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
                I G  + GDL  A   F   P+R+  +WNA++ GL+++G    A +LF EMP+RN
Sbjct: 82  SWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRN 141

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VVSYTTM+DG A+ G++  AR +F+A PDR++V+W+A+ISGY +NG   EA K+F  M  
Sbjct: 142 VVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPE 201

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           KNV            AC+                             A++    K G+++
Sbjct: 202 KNV-----------VACT-----------------------------AMITSYCKQGDVE 221

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  LF+ +  +DV+S+ +MI G   +GHG +A+ L   M  EG+ PD      VLTACS
Sbjct: 222 SARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACS 281

Query: 444 HVGLVEDG 451
            + L+  G
Sbjct: 282 ALALLRQG 289



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 28/292 (9%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG--DMTSARSLF-EAAPDR 293
           N  I  L + GD+ +AR++FD MP R+VVS+  ++    + G   + +AR LF EA P R
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           DVV+W+++I+G   +G  D A   F+    +NV     +L  L+    ++G  D ++   
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLL----RLGRADDAD--- 131

Query: 354 SYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
               R   ++ + +V++   +VD  A+ G + RA E+F+ MP+R++VS+ +MI G   +G
Sbjct: 132 ----RLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENG 187

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
              +A  LF+ M  + +    VA T ++T+    G VE   R F+ ++    I      +
Sbjct: 188 MFVEATKLFEAMPEKNV----VACTAMITSYCKQGDVESARRLFDGIRAKDVI-----SW 238

Query: 472 ACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLYSDIELGE 520
             M+      GH + A  L   M    V+P  +   A+L AC   + +  G+
Sbjct: 239 NTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGK 290



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 25/241 (10%)

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD--EAVK 316
           +  R ++     I   A+ GD+ +AR +F+A P RDVV+W+AL++   + G+     A +
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 317 IFSD-MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           +F + M S++V        S+++ C   G+LD ++   +   + ++    A ++A L+  
Sbjct: 70  LFDEAMPSRDVVS----WNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNA-MLAGLL-- 122

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
             + G  D A  LF  MP R+VVSY +M+ GL+  G   +A  +FD M    L    V++
Sbjct: 123 --RLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNL----VSW 176

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNS 493
             +++     G+  +  + FEAM       P     AC  M+    + G ++SA  L + 
Sbjct: 177 AAMISGYVENGMFVEATKLFEAM-------PEKNVVACTAMITSYCKQGDVESARRLFDG 229

Query: 494 M 494
           +
Sbjct: 230 I 230



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 100/258 (38%), Gaps = 49/258 (18%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P  + L++ LT      L       H+  IK  LE   S     +++ +S    +  S  
Sbjct: 268 PDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTM-YSKCGNVGESEL 326

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   +   WNT++  Y+Q+ ++ +V  +F  +     +PD  TF  V+ AC HV  
Sbjct: 327 VFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHV-- 384

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS-----WT 206
                                         GK   +  + K+FD M  +  +S     + 
Sbjct: 385 ------------------------------GK---VDASLKLFDLMSSKYAISPRAEHYA 411

Query: 207 AMIVGYASVGDLVEAKTVFDLMP-ERSNVSWNALIG-----GLVKIGDLRSARQLFDEMP 260
            ++   +  G L +A +    MP E     W +L+G     G V++G+L  A ++  +  
Sbjct: 412 CIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGEL--AAKMLVQSD 469

Query: 261 ERNVVSYTTMIDGYAKVG 278
             +   Y  + + YA  G
Sbjct: 470 SESSGPYVILSNIYAAAG 487


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/557 (31%), Positives = 305/557 (54%), Gaps = 18/557 (3%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYS 89
           +P   C  +A       +  +    +   +IK G L+ D  +    I +       L  +
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             VF ++   N   W  ++    Q     E   +F+ +I     PD++T   VI AC+++
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANM 284

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCARKVFDEMPERNVVSWT 206
             +  G  +H+  IR G+  D  VG  LI++Y K      +  ARK+FD++ + NV SWT
Sbjct: 285 ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWT 344

Query: 207 AMIVGYASVG-------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           AMI GY   G       DL     +  ++P  ++ ++++ +     +  LR   Q+F   
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIP--NHFTFSSTLKACANLAALRIGEQVFTHA 402

Query: 260 PERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            +    S      ++I  YA+ G +  AR  F+   ++++++++ +I  YA+N   +EA+
Sbjct: 403 VKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEAL 462

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           ++F+++  + +    F   SL+S  + +G +     + + + +S + L+++ V  AL+ M
Sbjct: 463 ELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQS-VCNALISM 521

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            ++CGN++ A ++FE M +R+V+S+ S+I G + HG   QA+ LF +ML EG+ P+EV +
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTY 581

Query: 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
             VL+ACSHVGLV +GW+ F++M   + ++P  EHYAC+VD+LGR+G L  A + +NSMP
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMP 641

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
            +  A  W   LGAC+++ ++ELG+  A  + E EP +  +Y+LLSN+YA+  +W +V  
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSN 701

Query: 556 VRSKMKERGLRKIPGCS 572
           +R  MKE+ L K  GCS
Sbjct: 702 IRKAMKEKXLIKEAGCS 718



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 177/409 (43%), Gaps = 80/409 (19%)

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F    NPN  L   L++  + N R  +  +    ++ + + PD  T+ L +K C    S 
Sbjct: 25  FPTFTNPNP-LTGRLIQEIN-NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVG 211
             GT +H  + +  +  D     SLI LY K  +   A  +F  M   R+++SW+AM+  
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSC 142

Query: 212 YA----------SVGDLVE-------------------------AKTVFDLMPERSNVSW 236
           +A          +  D++E                           ++F  + +   +  
Sbjct: 143 FANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQS 202

Query: 237 NALIG-GLVKI-----GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           +  +G GL+ +     GDL SA ++F++MPERN V+                        
Sbjct: 203 DVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVT------------------------ 238

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
                  W+ +I+   Q G   EA+ +F DM     +PD F L  ++SAC+ +  L L  
Sbjct: 239 -------WTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQ 291

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKC---GNMDRAAELFETMPNRDVVSYCSMIKG- 406
            + S   R  + L R  V   L++M AKC   G+M  A ++F+ + + +V S+ +MI G 
Sbjct: 292 QLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +   G+  +A+ LF  M+   + P+   F+  L AC+++  +  G + F
Sbjct: 351 VQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/406 (38%), Positives = 248/406 (61%), Gaps = 3/406 (0%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + D     +++  Y +   +  A+  F++MP ++  SW  MI G+A    + +A+ +F +
Sbjct: 35  EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLI 94

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MP ++ V+WNA+I G V+ GDL SA +LF++ P ++VV++T MI GY K+G +  A  LF
Sbjct: 95  MPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLF 154

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           E  P++++V W+A+I+GY +N + ++ VK+F  M    +QP+   L S +  CS++  L 
Sbjct: 155 EKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQ 214

Query: 348 LSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           L   V   + +S + D + A    +L+ M  KCG ++   +LF  +P RDVV++ +MI G
Sbjct: 215 LGRQVHQLVCKSPLCDDTTAGT--SLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISG 272

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + HG G++A+ LFD M+ +G+ PD + F  VL AC+H G  + G ++F +M   Y +V 
Sbjct: 273 YAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVA 332

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
            P+HY CMVDLLGR G L  A +L+  MP +PHA+ +G LLGAC+++ + E+ E  + +L
Sbjct: 333 KPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKL 392

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             L+P +A  YV L+N+YA   RW  V  VR  MK   + K PG S
Sbjct: 393 LNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYS 438



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 184/434 (42%), Gaps = 100/434 (23%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C+   + +  + A F  +   +T  WNT++ G++QN +  +   +F+       +P K  
Sbjct: 47  CYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFL------IMPTK-- 98

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
                                  V+ W          ++I  Y +  ++  A K+F++ P
Sbjct: 99  ----------------------NVVTW---------NAMISGYVECGDLDSALKLFEKAP 127

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
            ++VV+WTAMI GY  +G +  A+ +F+ MPE++ V+WNA+I G ++        +LF  
Sbjct: 128 FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRT 187

Query: 259 M------PERNVVSY---------------------------------TTMIDGYAKVGD 279
           M      P  + +S                                  T++I  Y K G 
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGV 247

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +     LF   P RDVV W+A+ISGYAQ+G+  +A+ +F +M  K ++PD    V+++ A
Sbjct: 248 LEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMA 307

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVV 398
           C+  G  DL       +++ +  +++      +VD+  + G +  A +L E MP +    
Sbjct: 308 CNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAA 367

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + +++    IH +   A     ++L+             L   S  G V+        +
Sbjct: 368 VFGTLLGACRIHKNTEMAEFASQKLLN-------------LDPASATGYVQ--------L 406

Query: 459 QNVYAIVPSPEHYA 472
            NVYA     +H A
Sbjct: 407 ANVYAATKRWDHVA 420



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 55/332 (16%)

Query: 228 MPERSNVSWNALIGGLVKI-GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           M  ++ V+WN+++ G+ K  G L+ A++LF ++PE + VSY TM+  Y +  +M  A++ 
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE  P +D  +W+ +I+G+AQN Q D+A  +F  M +KNV        +++S   + G+L
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGYVECGDL 116

Query: 347 DLSNWVDSYLSRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
                 DS L        ++ V   A++    K G +  A  LFE MP +++V++ +MI 
Sbjct: 117 ------DSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIA 170

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV-------------------- 445
           G   +      V LF  M+  G+ P+    +  L  CS +                    
Sbjct: 171 GYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCD 230

Query: 446 ---------------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
                          G++EDGW+ F  +     +      +  M+    + G  K A  L
Sbjct: 231 DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVT-----WNAMISGYAQHGEGKKALGL 285

Query: 491 LNSM---PVEPHASAWGALLGACKLYSDIELG 519
            + M    ++P    + A+L AC      +LG
Sbjct: 286 FDEMIEKGMKPDWITFVAVLMACNHAGFTDLG 317


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/530 (33%), Positives = 298/530 (56%), Gaps = 14/530 (2%)

Query: 56  VHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++  ++K G LE D  +    I +    +  L  +  VF+++   N   W  ++  ++Q 
Sbjct: 168 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 227

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   +F+ +     VPD++T+  V+ AC+ +  +  G  +H+ VIR G+  DV VG
Sbjct: 228 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 287

Query: 175 TSLIDLYGK---RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL-VEAKTVFDLMPE 230
            SL+D+Y K      +  +RKVF++MPE NV+SWTA+I  Y   G+   EA  +F  M  
Sbjct: 288 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 347

Query: 231 ---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS 282
              R N  S+++++     + D  +  Q++    +  + S      ++I  YA+ G M  
Sbjct: 348 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 407

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR  F+   ++++V+++A++ GYA+N + +EA  +F+++    +    F   SL+S  + 
Sbjct: 408 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 467

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G +     +   L +     S   +  AL+ M ++CGN++ A ++F  M +R+V+S+ S
Sbjct: 468 IGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTS 526

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G + HG   +A+ +F +ML  G  P+E+ +  VL+ACSHVG++ +G + F +M   +
Sbjct: 527 MITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEH 586

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            IVP  EHYACMVDLLGR+G L  A E +NSMP+   A  W  LLGAC+++ + ELG   
Sbjct: 587 GIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA 646

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A  + E EP +  +Y+LLSN++A+A +W DV  +R  MKER L K  GCS
Sbjct: 647 AEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCS 696



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/524 (24%), Positives = 265/524 (50%), Gaps = 50/524 (9%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV 72
           H + S++     ++AP +    S LL +    +  +L      VH  +++ GLE D  ++
Sbjct: 26  HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGK---LVHRKLMQSGLELDSVVL 82

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREE 131
              ISL +S       +  +F  + N    + W+ ++  ++ NS   +    F+ ++   
Sbjct: 83  NTLISL-YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGK-RKEISC 189
             P++Y F  VI+ACS+      G  I+  V++ G ++ DV VG  LID++ K   ++  
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGL 243
           A KVFD+MPERN+V+WT MI  +A +G   +A  +F        +P+R   ++++++   
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLSAC 259

Query: 244 VKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKV---GDMTSARSLFEAAPDRDVV 296
            ++G L   +QL   +       +V    +++D YAK    G +  +R +FE  P+ +V+
Sbjct: 260 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 319

Query: 297 AWSALISGYAQNGQPD-EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +W+A+I+ Y Q+G+ D EA+++F  M S +++P+ F   S++ AC  + +      V SY
Sbjct: 320 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 379

Query: 356 LSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
             +  + ++  + +  +L+ M A+ G M+ A + F+ +  +++VSY +++ G + +    
Sbjct: 380 AVK--LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----------LVEDGWRFFEAMQNVYA 463
           +A  LF+ +   G+      F  +L+  + +G           L++ G++  + + N   
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA-- 495

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                     ++ +  R G++++A+++ N M  + +  +W +++
Sbjct: 496 ----------LISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 528



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 195/422 (46%), Gaps = 87/422 (20%)

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           R    F+    + ++ A PD  T+ +++K+C    + + G  +H  +++ G++ D  V  
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 176 SLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---- 230
           +LI LY K  +   AR +F+ M  +R++VSW+AM+  +A+     +A   F  M E    
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143

Query: 231 --------------RSNVSW--NALIGGLVKI---------------------GDLRSAR 253
                          +N +W    + G +VK                      GDL SA 
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 203

Query: 254 QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           ++FD+MPERN+V++T MI  +A++G    AR                            +
Sbjct: 204 KVFDKMPERNLVTWTLMITRFAQLG---CAR----------------------------D 232

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A+ +F DM      PD F   S++SAC+++G L L   + S + R  + L    V  +LV
Sbjct: 233 AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVC-VGCSLV 291

Query: 374 DMNAKC---GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH-GRQAVSLFDRMLSEGLT 429
           DM AKC   G++D + ++FE MP  +V+S+ ++I      G   ++A+ LF +M+S  + 
Sbjct: 292 DMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIR 351

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLK 485
           P+  +F+ VL AC ++     G + +      YA+        C    ++ +  R+G ++
Sbjct: 352 PNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRME 406

Query: 486 SA 487
            A
Sbjct: 407 DA 408


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 301/548 (54%), Gaps = 20/548 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGL--EQDHSLVAHFISLCHSLATPLSYSTAV---FNR 95
           ++L KK +      Q+ S I+  GL   QD++ +     L   +    + +T +   F+ 
Sbjct: 12  VSLFKKHQTLEQCKQIQSIIVTSGLYSTQDNNTL-FLTKLLQCVPFSQNQNTCLLLLFDT 70

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           I  PNT L N ++   S     +     + +L ++   PDK+TFPL++K  S  ++ +  
Sbjct: 71  INTPNTRLLNKMIAACSHPHISL---LCYAKLRQKGVQPDKHTFPLLLKTFSKSIA-QNP 126

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             I+A + + G D D+F+G +LI  +     +  AR+VFDE P ++ V+WTA+I GY   
Sbjct: 127 FMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKN 186

Query: 216 GDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----- 266
               EA   F  M  R      V+  +++     +GD    R +     E   V      
Sbjct: 187 DCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYV 246

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
           ++ ++D Y K G    A  +F   P RDVV W+ L++GY Q+ +  +A++ F DM S NV
Sbjct: 247 FSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNV 306

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            P++F L S++SAC+Q+G LD    V  Y+  + ++++   +  ALVDM AKCG++D A 
Sbjct: 307 APNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMN-VTLGTALVDMYAKCGSIDEAL 365

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +FE MP ++V ++  +I GL++HG    A+++F  ML  G+ P+EV F  VL ACSH G
Sbjct: 366 RVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGG 425

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
            VE+G R FE M++ Y + P  +HY CMVD+LGR G+L+ A +++++MP++P     GAL
Sbjct: 426 FVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGAL 485

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
            GAC ++   E+GE + N L   +P ++GSY LL+N+Y     W     VR  MK   + 
Sbjct: 486 FGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRVV 545

Query: 567 KIPGCSSL 574
           K PG S +
Sbjct: 546 KAPGYSRI 553


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 300/530 (56%), Gaps = 18/530 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH  +++ GL  + ++    IS+ ++    +  +  VF+ + + +   W TL   Y+++
Sbjct: 166 EVHVRVMEAGLANNATVGNALISM-YAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAES 224

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E    +  +++E   P + T+  V+ AC  + ++ +G  IHA ++      DV V 
Sbjct: 225 GYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVS 284

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
           T+L  +Y K   +  AR+VF+ +P R+V++W  MI G    G L EA  +F  M      
Sbjct: 285 TALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA 344

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSAR 284
           P+R  V++ A++    + G L   +++     +  +VS       +I+ Y+K G M  AR
Sbjct: 345 PDR--VTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDAR 402

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F+  P RDVV+W+AL+ GYA  GQ  E+   F  M  + V+ ++   + ++ ACS   
Sbjct: 403 QVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPV 462

Query: 345 NLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            L     + + + ++ +  DL+ A+   AL+ M  KCG+++ A  + E M  RDVV++ +
Sbjct: 463 ALKWGKEIHAEVVKAGIFADLAVAN---ALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNT 519

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I GL+ +G G +A+  F+ M SE + P+   F  V++AC    LVE+G R F +M+  Y
Sbjct: 520 LIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDY 579

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            IVP+ +HYACMVD+L R GHL  A +++ +MP +P A+ WGALL AC+ + ++E+GE  
Sbjct: 580 GIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQA 639

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A +  +LEPQNAG+YV LS IYA A  W DV  +R  MKERG++K PG S
Sbjct: 640 AEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRS 689



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 245/511 (47%), Gaps = 53/511 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH HI++ G++ +  ++   + L +     ++ +  +F++  N +   WN ++ GY+  
Sbjct: 65  QVHEHILRFGMKPNVYIINTLLKL-YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHR 123

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F +F  + +E   PDK+TF  ++ ACS   ++  G  +H  V+  G+  +  VG
Sbjct: 124 GLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVG 183

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
            +LI +Y K   +  AR+VFD M  R+ VSWT +   YA  G   E+   +  M +    
Sbjct: 184 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVR 243

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSL 286
            S +++  ++     +  L   +Q+  ++ E     +V   T +   Y K G +  AR +
Sbjct: 244 PSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREV 303

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE  P+RDV+AW+ +I G   +GQ +EA  +F  M  + V PD    ++++SAC++ G L
Sbjct: 304 FECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGL 363

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                + +   +  + +S      AL++M +K G+M  A ++F+ MP RDVVS+ +++ G
Sbjct: 364 ACGKEIHARAVKDGL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGG 422

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH---------------------- 444
            +  G   ++ S F +ML +G+  +++ +  VL ACS+                      
Sbjct: 423 YADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFAD 482

Query: 445 -------------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA---Y 488
                         G VED  R  E M     +      +  ++  L + G    A   +
Sbjct: 483 LAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVT-----WNTLIGGLAQNGRGLEALQKF 537

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           E++ S  + P+A+ +  ++ AC++ + +E G
Sbjct: 538 EVMKSEEMRPNATTFVNVMSACRVRNLVEEG 568



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 198/391 (50%), Gaps = 18/391 (4%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D Y +  ++++C     +  G  +H  ++R+G+  +V++  +L+ LY     ++ AR++F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLR 250
           D+   ++VVSW  MI GYA  G   EA  +F LM +        ++ +++        L 
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 251 SARQLFDEMPERNVVSYTT----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             R++   + E  + +  T    +I  YAK G +  AR +F+A   RD V+W+ L   YA
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL--SRSHMDLS 364
           ++G   E++K +  M  + V+P     ++++SAC  +  L+    + + +  S  H D+ 
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDV- 281

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              V  AL  M  KCG +  A E+FE +PNRDV+++ +MI GL   G   +A  +F RML
Sbjct: 282 --RVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
            E + PD V +  +L+AC+  G +  G +   A      +V        ++++  + G +
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACG-KEIHARAVKDGLVSDVRFGNALINMYSKAGSM 398

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           K A ++ + MP     S W AL+G    Y+D
Sbjct: 399 KDARQVFDRMPKRDVVS-WTALVGG---YAD 425


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 265/473 (56%), Gaps = 43/473 (9%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL--YGKRKEISCARKVFDEMPE 199
           +++  S   ++++ T IHA  I  G+  D FV + ++          I  AR +F  + +
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS--------------------------- 232
            ++     +I  YA   + ++A   +  M E S                           
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157

Query: 233 ------NVSW-------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                  + W       N L+      G + SA  +FD  PE +  S+  MI GY K G 
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGV 217

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
             SAR +FEA PDRDVV+WS +I+GY Q  +  E + +F DM  + ++P+E +LV+ +SA
Sbjct: 218 FKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSA 277

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G ++   W++ Y+ R ++ L+   +  AL+DM +KCG+++RA E+F  M  ++V++
Sbjct: 278 CAHLGAMEQGQWIERYMERKNVRLT-VRLGTALIDMYSKCGSVERALEVFHKMKEKNVLA 336

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI GL+I+G G+ A++LF +M  +G+ P+EV F  +L ACSH  LV++G  FF +M 
Sbjct: 337 WSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMT 396

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           ++Y + P+  H+ CMVDL GR G L  A  ++ SMP +P+++ WGALL AC+++ D ELG
Sbjct: 397 SIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELG 456

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E V  RL EL+P + G YVLLSNIYA   RW  V  +R  M+ER + K PGCS
Sbjct: 457 EQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCS 509



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 214/469 (45%), Gaps = 58/469 (12%)

Query: 22  NCSRSAPINFPKPS--CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC 79
           N     P   P P   C    L  +  CK    L Q+H+  I  G+  D+ + +  +S  
Sbjct: 18  NLQNQNPPWIPTPQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFA 77

Query: 80  H-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKY 137
             S    + Y+  +F RI  P+ F+ NTL++ Y+ +   I+    +  +     V PD +
Sbjct: 78  ALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVH 137

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TFPL++KACS + S+R G AIH+ V + G   +V V   L+ +Y     I  A  VFD  
Sbjct: 138 TFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT 197

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
           PE +  SW  MI GY   G    A+ +F+ MP+R  VSW+ +I G V+    +    LF 
Sbjct: 198 PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQ 257

Query: 258 EM------PERNVVSY---------------------------------TTMIDGYAKVG 278
           +M      P  +V+                                   T +ID Y+K G
Sbjct: 258 DMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCG 317

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +  A  +F    +++V+AWSA+I+G A NGQ  +A+ +FS M  + V+P+E   + +++
Sbjct: 318 SVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILN 377

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLS------RAHVIAALVDMNAKCGNMDRAAELFETM 392
           ACS       S  VD   S  H   S       AH    +VD+  + G +D+A  + ++M
Sbjct: 378 ACSH------SKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSM 431

Query: 393 PNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           P + +   + +++    IHG       +  R+L   L P+     ++L+
Sbjct: 432 PFKPNSAIWGALLNACRIHGDTELGEQVGKRLLE--LDPNHGGRYVLLS 478


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/530 (33%), Positives = 298/530 (56%), Gaps = 14/530 (2%)

Query: 56  VHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++  ++K G LE D  +    I +    +  L  +  VF+++   N   W  ++  ++Q 
Sbjct: 150 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 209

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   +F+ +     VPD++T+  V+ AC+ +  +  G  +H+ VIR G+  DV VG
Sbjct: 210 GCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 269

Query: 175 TSLIDLYGK---RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL-VEAKTVFDLMPE 230
            SL+D+Y K      +  +RKVF++MPE NV+SWTA+I  Y   G+   EA  +F  M  
Sbjct: 270 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 231 ---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS 282
              R N  S+++++     + D  +  Q++    +  + S      ++I  YA+ G M  
Sbjct: 330 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 389

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR  F+   ++++V+++A++ GYA+N + +EA  +F+++    +    F   SL+S  + 
Sbjct: 390 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 449

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G +     +   L +     S   +  AL+ M ++CGN++ A ++F  M +R+V+S+ S
Sbjct: 450 IGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTS 508

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G + HG   +A+ +F +ML  G  P+E+ +  VL+ACSHVG++ +G + F +M   +
Sbjct: 509 MITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEH 568

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            IVP  EHYACMVDLLGR+G L  A E +NSMP+   A  W  LLGAC+++ + ELG   
Sbjct: 569 GIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHA 628

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A  + E EP +  +Y+LLSN++A+A +W DV  +R  MKER L K  GCS
Sbjct: 629 AEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCS 678



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/524 (24%), Positives = 265/524 (50%), Gaps = 50/524 (9%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV 72
           H + S++     ++AP +    S LL +    +  +L      VH  +++ GLE D  ++
Sbjct: 8   HHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGK---LVHRKLMQSGLELDSVVL 64

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREE 131
              ISL +S       +  +F  + N    + W+ ++  ++ NS   +    F+ ++   
Sbjct: 65  NTLISL-YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGK-RKEISC 189
             P++Y F  VI+ACS+      G  I+  V++ G ++ DV VG  LID++ K   ++  
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGL 243
           A KVFD+MPERN+V+WT MI  +A +G   +A  +F        +P+R   ++++++   
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLSAC 241

Query: 244 VKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKV---GDMTSARSLFEAAPDRDVV 296
            ++G L   +QL   +       +V    +++D YAK    G +  +R +FE  P+ +V+
Sbjct: 242 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 301

Query: 297 AWSALISGYAQNGQPD-EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +W+A+I+ Y Q+G+ D EA+++F  M S +++P+ F   S++ AC  + +      V SY
Sbjct: 302 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 361

Query: 356 LSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
             +  + ++  + +  +L+ M A+ G M+ A + F+ +  +++VSY +++ G + +    
Sbjct: 362 AVK--LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----------LVEDGWRFFEAMQNVYA 463
           +A  LF+ +   G+      F  +L+  + +G           L++ G++  + + N   
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA-- 477

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                     ++ +  R G++++A+++ N M  + +  +W +++
Sbjct: 478 ----------LISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 510



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 195/422 (46%), Gaps = 87/422 (20%)

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           R    F+    + ++ A PD  T+ +++K+C    + + G  +H  +++ G++ D  V  
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 176 SLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---- 230
           +LI LY K  +   AR +F+ M  +R++VSW+AM+  +A+     +A   F  M E    
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 231 --------------RSNVSW--NALIGGLVKI---------------------GDLRSAR 253
                          +N +W    + G +VK                      GDL SA 
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 254 QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
           ++FD+MPERN+V++T MI  +A++G    AR                            +
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLG---CAR----------------------------D 214

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A+ +F DM      PD F   S++SAC+++G L L   + S + R  + L    V  +LV
Sbjct: 215 AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVC-VGCSLV 273

Query: 374 DMNAKC---GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH-GRQAVSLFDRMLSEGLT 429
           DM AKC   G++D + ++FE MP  +V+S+ ++I      G   ++A+ LF +M+S  + 
Sbjct: 274 DMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIR 333

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLK 485
           P+  +F+ VL AC ++     G + +      YA+        C    ++ +  R+G ++
Sbjct: 334 PNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRME 388

Query: 486 SA 487
            A
Sbjct: 389 DA 390


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/530 (32%), Positives = 290/530 (54%), Gaps = 20/530 (3%)

Query: 56   VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
            +H  I++ G++ +  L    +++     + +  +  VF      +   WN+++ G++Q+ 
Sbjct: 508  IHEDILRSGIKSNGHLANALMNMYRRCGSIME-AQNVFEGTRARDIISWNSMIAGHAQHG 566

Query: 116  RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
             +   + +F+ + +E   PDK TF  V+  C +  ++  G  IH  +I  G+  DV +G 
Sbjct: 567  SYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGN 626

Query: 176  SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
            +LI++Y +   +  A +VF  +  RNV+SWTAMI G+A  G   E +  F+L  +  N  
Sbjct: 627  ALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG---EDRKAFELFWQMQNDG 683

Query: 236  WNALIGGLVKIGDLRSARQLFDEMPERNVVSY-------------TTMIDGYAKVGDMTS 282
            +  +      I     +    DE   + V+++               +I  Y+K G MT 
Sbjct: 684  FKPVKSTFSSILKACMSSACLDE--GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTD 741

Query: 283  ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            AR +F+  P+RD+++W+ +I+GYAQNG    A++    M  + V  ++F  VS+++ACS 
Sbjct: 742  ARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSS 801

Query: 343  VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
               L+    V + + +  M      V AAL+ M AKCG+++ A E+F+    ++VV++ +
Sbjct: 802  FSALEEGKRVHAEIVKRKMQ-GDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNA 860

Query: 403  MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
            MI   + HG   +A+  F+ M  EG+ PD   FT +L+AC+H GLV +G R F ++++ +
Sbjct: 861  MINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQH 920

Query: 463  AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
             + P+ EHY C+V LLGR G  + A  L+N MP  P A+ W  LLGAC+++ ++ L E  
Sbjct: 921  GLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHA 980

Query: 523  ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            AN   +L  +N   YVLLSN+YA A RW DV  +R  M+ RG+RK PG S
Sbjct: 981  ANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 1030



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 247/503 (49%), Gaps = 25/503 (4%)

Query: 55  QVHSHIIKKGLEQD---HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           ++H   + +GL  D    + +A     C  +A       A  +R V     ++N L+   
Sbjct: 305 RIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDV----VVYNALIAAL 360

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           +Q+  + E F  + ++  +  V ++ T+  V+ ACS   ++  G  IH+ +   G   DV
Sbjct: 361 AQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDV 420

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            +G SLI +Y +  ++  AR++F+ MP+R+++SW A+I GYA   D  EA  ++  M   
Sbjct: 421 QIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSE 480

Query: 232 ----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSA 283
                 V++  L+            + + +++    + S       +++ Y + G +  A
Sbjct: 481 GVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEA 540

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           +++FE    RD+++W+++I+G+AQ+G  + A K+F +M  + ++PD+    S++  C   
Sbjct: 541 QNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNP 600

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             L+L   +   +  S + L   ++  AL++M  +CG++  A E+F ++ +R+V+S+ +M
Sbjct: 601 EALELGRQIHMLIIESGLQLD-VNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAM 659

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G +  G  R+A  LF +M ++G  P +  F+ +L AC     +++G +    + N   
Sbjct: 660 IGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGY 719

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
            + +    A ++    ++G +  A ++ + MP     S W  ++     Y+   LG    
Sbjct: 720 ELDTGVGNA-LISAYSKSGSMTDARKVFDKMPNRDIMS-WNKMIAG---YAQNGLGGTAL 774

Query: 524 NRLFELEPQ----NAGSYVLLSN 542
              ++++ Q    N  S+V + N
Sbjct: 775 QFAYQMQEQGVVLNKFSFVSILN 797



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/540 (25%), Positives = 252/540 (46%), Gaps = 54/540 (10%)

Query: 32  PKPSCLLSA--LTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISL---CHSLA 83
           P+P+    A  + L++ C  +  L    ++H+ +++ G+  D  L    I++   C S+ 
Sbjct: 75  PRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV- 133

Query: 84  TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
              S +  VF ++   +   WN+L+  Y+Q     + F +F  +     +P K T+  ++
Sbjct: 134 ---SDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISIL 190

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
            AC     +  G  IH+ +I  G   D  V  SL+++YGK +++  AR+VF  +  R+VV
Sbjct: 191 TACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVV 250

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL---- 255
           S+  M+  YA    + E   +F  M         V++  L+        L   +++    
Sbjct: 251 SYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLA 310

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            +E    ++   T +   + + GD+  A+   EA  DRDVV ++ALI+  AQ+G  +EA 
Sbjct: 311 VNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAF 370

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           + +  M S  V  +    +S+++ACS    L     + S++S      S   +  +L+ M
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHS-SDVQIGNSLISM 429

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            A+CG++ RA ELF TMP RD++S+ ++I G +      +A+ L+ +M SEG+ P  V F
Sbjct: 430 YARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTF 489

Query: 436 TIVLTACSHVGLVEDGWRFFE---------------AMQNVY----AIVPSPE------- 469
             +L+AC++     DG    E               A+ N+Y    +I+ +         
Sbjct: 490 LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRA 549

Query: 470 ----HYACMVDLLGRTGHLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELV 522
                +  M+    + G  ++AY+L   M    +EP    + ++L  CK    +ELG  +
Sbjct: 550 RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI 609


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 308/579 (53%), Gaps = 30/579 (5%)

Query: 13   HKSCSSMLPNCSRSAPINFPKPS-CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL 71
            H +  ++ P+CS +   N    S   +SALT      L T    V   +      +D  L
Sbjct: 1027 HSTNLAVWPSCSATCGPNVVSISLTFMSALT----GSLTTRFSSVFLRV-----AEDQFL 1077

Query: 72   VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131
            +    S    ++   + +T  +  +   N   WN+++   ++    +E    F  L +  
Sbjct: 1078 LGFPSSRRRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLG 1137

Query: 132  AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
             +P + +FP  IK+CS +  +  G   H     +G + D+FV ++LID+Y K  ++  AR
Sbjct: 1138 LIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDAR 1197

Query: 192  KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV--SWNALIGGLVKIGD 248
             +FDE+P RNVVSWT+MI GY        A  +F D + E + V    N  +  +V +  
Sbjct: 1198 ALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSV 1257

Query: 249  LRSARQLFDEMPERNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            L +  ++  +     V  +              T++D YAK G    ++ +F+   ++D 
Sbjct: 1258 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 1317

Query: 296  VAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            ++W+++I+ YAQ+G   EA+++F  M     V+ +   L +++ AC+  G L     +  
Sbjct: 1318 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 1377

Query: 355  YLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
             + +  MDL     V  +++DM  KCG ++ A + F+ M  ++V S+ +M+ G  +HG  
Sbjct: 1378 QVIK--MDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRA 1435

Query: 414  RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            ++A+ +F +M+  G+ P+ + F  VL ACSH GLVE+GW +F AM++ Y I P  EHY C
Sbjct: 1436 KEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGC 1495

Query: 474  MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
            MVDL GR G L  AY L+  M ++P    WG+LLGAC+++ +++LGE+ A +LFEL+P N
Sbjct: 1496 MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDN 1555

Query: 534  AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             G YVLLSN+YA A RW DV  +R  MK R L K PG S
Sbjct: 1556 CGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFS 1594



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 228/450 (50%), Gaps = 64/450 (14%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           AL L++ CK   HL Q+H+ II+ GL  D  L    I L                     
Sbjct: 30  ALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHL--------------------- 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
                      YS + R      +F ++      P  +T+ L+I+A +      +   ++
Sbjct: 69  -----------YSTHGRIAYAILLFYQIQN----PCTFTWNLIIRANTINGLSEQALMLY 113

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             ++  G+  D F    +I                     +   ++ ++ +G    G L+
Sbjct: 114 KNMVCQGIAADKFTFPFVI---------------------KACTNFLSIDLGKVVHGSLI 152

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           +     D+  +      N LI    K G  R A ++F++M  RNVVS+TT+I G    GD
Sbjct: 153 KYGFSGDVFVQ------NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR +F+  P ++VV+W+A+I+GY +N QP+EA+++F  M ++N+ P+E+ +VSL+ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+++G L L   +  Y  ++ +++   ++  AL+DM +KCG++  A E+FETMP + + +
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIG-VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + SMI  L +HG G++A++LF  M    + PD + F  VL AC H+  V++G  +F  M 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
             Y I P PEHY CM +L  R+ +L  A++
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 131/299 (43%), Gaps = 45/299 (15%)

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y+  G +  A  LF    +     W+ +I     NG  ++A+ ++ +M  + +  D
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 330 EFILVSLMSACSQVGNLDL--------------------SNWVDSYLSRSHMD------- 362
           +F    ++ AC+   ++DL                    +N +D Y    H         
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 363 -------LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
                  +S   VI+ L+     CG++  A  +F+ +P+++VVS+ +MI G   +    +
Sbjct: 185 KMRVRNVVSWTTVISGLIS----CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEE 240

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACM 474
           A+ LF RM +E + P+E     ++ AC+ +G++  G    + A++N   I         +
Sbjct: 241 ALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI--GVYLGTAL 298

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           +D+  + G +K A E+  +MP       W +++ +  ++    LG+   N   E+E  N
Sbjct: 299 IDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVHG---LGQEALNLFSEMERVN 353



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 31/186 (16%)

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+ + +  G +  A  LF  + N    ++  +I+  +I+G   QA+ L+  M+ +G+  D
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 432 EVAFTIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           +  F  V+ AC+           H  L++ G+     +QN             ++D   +
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN------------NLIDFYFK 172

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV-ANRLF-ELEPQNAGSYV 538
            GH + A ++   M V  +  +W  ++        I  G+L  A R+F E+  +N  S+ 
Sbjct: 173 CGHTRFALKVFEKMRVR-NVVSWTTVISGL-----ISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 539 LLSNIY 544
            + N Y
Sbjct: 227 AMINGY 232


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 290/504 (57%), Gaps = 21/504 (4%)

Query: 90  TAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           T +FNR V+  + F WN+++   +++    E    F  + +    P + +FP  IKACS 
Sbjct: 29  TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G   H     +G   D+FV ++LI +Y    ++  ARKVFDE+P+R++VSWT+M
Sbjct: 89  LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSM 148

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALI---GGLVKIGDLRS---ARQLFDEMP-- 260
           I GY   G+ ++A ++F  +    N   +A+     GLV +    S   A+ L + +   
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208

Query: 261 ------ERNVVSYTTMIDGYAKVGD--MTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                 +R V    T++D YAK G+  +  AR +F+   D+D V++++++S YAQ+G  +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268

Query: 313 EAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA- 370
           EA ++F  +  +K V  +   L +++ A S  G L +   +   + R  M L    ++  
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGT 326

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +++DM  KCG ++ A + F+ M N++V S+ +MI G  +HGH  +A+ LF  M+  G+ P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           + + F  VL ACSH GL  +GWR+F AM+  + + P  EHY CMVDLLGR G L+ AY+L
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  M ++P +  W +LL AC+++ ++EL E+   RLFEL+  N G Y+LLS+IYA A RW
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506

Query: 551 LDVCLVRSKMKERGLRKIPGCSSL 574
            DV  VR  MK RGL K PG S L
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLL 530



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 192/375 (51%), Gaps = 21/375 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q H      G + D   V+  + + +S    L  +  VF+ I   +   W ++++GY  N
Sbjct: 97  QTHQQAFVFGYQSD-IFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLN 155

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTF------PLVIKACSHVLSVREGTAIHAAVIRWGVD 168
              ++  ++F  L+ +E   D   F        VI ACS V +     +IH+ VI+ G D
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215

Query: 169 EDVFVGTSLIDLYGKRKE--ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
             V VG +L+D Y K  E  ++ ARK+FD++ +++ VS+ +++  YA  G   EA  VF 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 227 LMPERSNVSWNALIGGLVKI-----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKV 277
            + +   V++NA+    V +     G LR  + + D++     E +V+  T++ID Y K 
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G + +AR  F+   +++V +W+A+I+GY  +G   +A+++F  M    V+P+    VS++
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 338 SACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR- 395
           +ACS  G +++   W ++   R  ++    H    +VD+  + G + +A +L + M  + 
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQRMKMKP 454

Query: 396 DVVSYCSMIKGLSIH 410
           D + + S++    IH
Sbjct: 455 DSIIWSSLLAACRIH 469



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 142/279 (50%), Gaps = 12/279 (4%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNR 95
           L+S ++   +   +     +HS +IK+G ++  S+    + +        ++ +  +F++
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVRE 154
           IV+ +   +N+++  Y+Q+    E F +F RL++ + V  +  T   V+ A SH  ++R 
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH  VIR G+++DV VGTS+ID+Y K   +  ARK FD M  +NV SWTAMI GY  
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365

Query: 215 VGDLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS---- 266
            G   +A  +F  M +   R N +++ +++      G      + F+ M  R  V     
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425

Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
            Y  M+D   + G +  A  L +    + D + WS+L++
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/482 (36%), Positives = 272/482 (56%), Gaps = 17/482 (3%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN  L+  ++   F E   ++ +++     P+ +TFP   K+C+ +     G+ +H  VI
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE-MPERNV-VSWTAMIVGYASVGDLVEA 221
           + G + + FV TSLI +Y K   I+ ARKVFDE    RN+ V + A+I GY+      +A
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 222 KTVFDLMPERSNVSWNALI--------GGLVKIG---DLRSARQLFDEMPERNVVSYTTM 270
             +F  M  +  VS NA+          G + +G    L +    F    + +V +   +
Sbjct: 144 VLLFRQM-RKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGN--CL 200

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +  Y + G +  AR LF+  P++ ++ W+A+ISGYAQNG     + ++  M    + PD 
Sbjct: 201 LTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDP 260

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             LV ++S+C+ +G       V+  +  S    +   +  AL++M A+CGN+ +A  +F+
Sbjct: 261 VTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFN-PFLKNALINMYARCGNLVKARAIFD 319

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M  ++V+S+ ++I G  +HG G  AV LFD M+S    PD  AF  VL+ACSH GL E 
Sbjct: 320 GMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEK 379

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F AM+  Y + P PEHY+C+VDLLGR G L+ A +L+ SM VEP  + WGALLGAC
Sbjct: 380 GLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGAC 439

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           K++ ++EL EL   ++ E EP N G YVLLSNI++ A     +  VR  M+ER L+K PG
Sbjct: 440 KIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPG 499

Query: 571 CS 572
           CS
Sbjct: 500 CS 501



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 204/399 (51%), Gaps = 18/399 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF--LWNTLLKGYS 112
           Q+H H+IK G E +  +    IS+ +   + ++ +  VF+   +       +N L+ GYS
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISM-YCKCSTIASARKVFDENHHSRNLAVCYNALIAGYS 135

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
            NSRF +   +F ++ +E    +  T   +I  C+  + +  GT++HA  +R+G+D D+ 
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLS 195

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAKTVFD 226
           VG  L+ +Y +   +  ARK+FD MPE+ +++W AMI GYA  G      DL        
Sbjct: 196 VGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTG 255

Query: 227 LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTS 282
           ++P+   V+   ++     +G   + R++   +       N      +I+ YA+ G++  
Sbjct: 256 IVPD--PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVK 313

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR++F+   +++V++W+A+I+GY  +GQ + AV++F +M S +  PD    VS++SACS 
Sbjct: 314 ARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSH 373

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYC 401
            G  +   +  + + R +         + +VD+  + G ++ A +L  +M    D   + 
Sbjct: 374 AGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWG 433

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           +++    IH +   A   F++++     P  + + ++L+
Sbjct: 434 ALLGACKIHRNVELAELAFEKVIE--FEPTNIGYYVLLS 470



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 38  LSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++ L LI  C    HL     +H+  ++ GL+ D S+    +++ +     + ++  +F+
Sbjct: 160 VTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTM-YVRCGSVDFARKLFD 218

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            +       WN ++ GY+QN     V  ++ ++     VPD  T   V+ +C+H+ +   
Sbjct: 219 GMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAA 278

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +   +   G   + F+  +LI++Y +   +  AR +FD M E+NV+SWTA+I GY  
Sbjct: 279 GREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGM 338

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
            G    A  +FD M     +S + L  G   +  L +       + E+ +  +T M   Y
Sbjct: 339 HGQGELAVQLFDEM-----ISSDELPDGAAFVSVLSACSHA--GLTEKGLYYFTAMERDY 391

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
                        +  P+     +S ++    + G+ +EA K+   M   +V+PD  +  
Sbjct: 392 G-----------LQPGPEH----YSCVVDLLGRAGRLEEARKLIGSM---SVEPDGAVWG 433

Query: 335 SLMSACSQVGNLDLS 349
           +L+ AC    N++L+
Sbjct: 434 ALLGACKIHRNVELA 448


>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Brachypodium distachyon]
          Length = 497

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/439 (37%), Positives = 253/439 (57%), Gaps = 33/439 (7%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PD  +    + +C+ +      + +H+  +R G   DV++  + +  Y    +++ A ++
Sbjct: 74  PDHLSISFSLHSCTRLPCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAERL 133

Query: 194 FDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS 251
           F +  +   +VV+WT M+ G+A                               + GD+  
Sbjct: 134 FSDTSKDVADVVTWTTMVAGHA-------------------------------RAGDVER 162

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           AR  FD MPERNVVS+  M+  YA  G ++ AR LF+    R+   WS++++G  Q+   
Sbjct: 163 ARWFFDAMPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHC 222

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           +EA+++FSDM ++ V P+E ILVS++SAC+Q+ +L+   WV +Y+ R         +  A
Sbjct: 223 EEALRVFSDMVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILATA 282

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +VDM  KCG +  A  +F  MP R++ S+ SMI GL+++G   QA+SLF +M   G+ P+
Sbjct: 283 IVDMYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPN 342

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           ++ F  +L ACSH GLV++G   F  M N + I P PEHY  MVDLLGR G +K A + +
Sbjct: 343 DITFIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFV 402

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MPVEPH   WGAL GAC ++ ++ELGE +A +L ELEP++   Y+LLSNIY T+ RW 
Sbjct: 403 KNMPVEPHPGLWGALAGACNIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGTSSRWE 462

Query: 552 DVCLVRSKMKERGLRKIPG 570
           D+  VR  +KER + K  G
Sbjct: 463 DMATVRRLIKERKVSKGTG 481



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 18/223 (8%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  LS +  +F+ + + N   W++++ G  Q+    E   +F  ++    VP++     V
Sbjct: 188 AGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSV 247

Query: 143 IKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           I AC+ + S+  G  +HA V R       V + T+++D+YGK   I  A +VF  MP RN
Sbjct: 248 ISACAQLRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRN 307

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFD 257
           + SW +MI G A  G  ++A ++F  M     + +++++  L+G     G +   R LF+
Sbjct: 308 IYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFN 367

Query: 258 EM---------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
            M         PE     Y  M+D   + G +  A    +  P
Sbjct: 368 RMVNDFGIQPVPEH----YGLMVDLLGRAGLVKEAVDFVKNMP 406


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/536 (34%), Positives = 294/536 (54%), Gaps = 21/536 (3%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPL---SYSTAVFNRIVNPNTFLWN 105
           H  Q+H+ II         L  + I+L   C  L   L   S +   F  IV      W 
Sbjct: 160 HATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVT-----WT 214

Query: 106 TLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
           +L+   S  +  ++  ++F ++      P+++TF  ++ A +  + V  G  +H+ + + 
Sbjct: 215 SLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKH 274

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
           G D ++FVGT+L+D+Y K  ++  A +VFD+MPERN+VSW +MIVG+        A  VF
Sbjct: 275 GFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF 334

Query: 226 -DLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAK 276
            D++ E++     VS ++++     +G L   RQ+   + +  +V  T    +++D Y K
Sbjct: 335 KDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFK 394

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
                    LF+   DRDVV W+ L+ G+ QN + +EA   F  M  + + PDE    ++
Sbjct: 395 CRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTV 454

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + + + +  L     +   + +    +    ++ +L+ M AKCG++  A ++FE + + +
Sbjct: 455 LHSSASLAALHQGTAIHDQIIKLGY-VKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHN 513

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           V+S+ +MI    +HG   Q + LF+ MLSEG+ P  V F  VL+ACSH G VE+G   F 
Sbjct: 514 VISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFN 573

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           +M+ ++ + P PEHYACMVDLLGR G L  A   + SMP++P  S WGALLGAC+ Y ++
Sbjct: 574 SMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNL 633

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++G   A RLFE+EP N G+YVLL+N+   + R  +   VR  M   G+RK PGCS
Sbjct: 634 KMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCS 689


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/440 (38%), Positives = 260/440 (59%), Gaps = 12/440 (2%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++AC++   V  G A+H + ++  V        +L+D+Y K   +  A  VFD M  R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-----WNALIGGLVKIGDLRSARQLF 256
           VV+WT++I  YA  G   EA  +F  M +R  VS        ++      G L + + + 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEM-DREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 257 DEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + + E     N+     ++D YAK G M  A S+F   P +D+++W+ +I GY++N  P+
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F DM  + ++PD   L  ++ AC+ + +LD    V  ++ R+    S   V  AL
Sbjct: 183 EALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGF-FSDQQVANAL 240

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           VDM  KCG    A  LF+ +P +D++++  MI G  +HG G  A++ F+ M   G+ PDE
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           V+F  +L ACSH GL+++GWRFF  MQ+   + P  EHYAC+VDLL R+G L  AY+ + 
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           SMP+EP A+ WGALL  C+++ D++L E VA  +FELEP+N G YVLL+N YA A++W +
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420

Query: 553 VCLVRSKMKERGLRKIPGCS 572
           V  +R K+  RGL+K PGCS
Sbjct: 421 VKKLRQKIGRRGLKKNPGCS 440



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 173/365 (47%), Gaps = 16/365 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  VF+ +       W +L+  Y++     E   +F  + RE   PD +T   V+ A
Sbjct: 49  LDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHA 108

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   S+  G  +H  +    +  ++FV  +L+D+Y K   +  A  VF EMP ++++SW
Sbjct: 109 CACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISW 168

Query: 206 TAMIVGYASVGDLVEAKTVF-----DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
             MI GY+      EA ++F     ++ P+ + ++   ++     +  L   +++   + 
Sbjct: 169 NTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLA--CILPACASLASLDRGKEVHGHIL 226

Query: 261 ERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
                S       ++D Y K G    AR LF+  P +D++ W+ +I+GY  +G  + A+ 
Sbjct: 227 RNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAIT 286

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDM 375
            F++M    ++PDE   +S++ ACS  G LD   W    + +   ++  +    A +VD+
Sbjct: 287 TFNEMRQAGIEPDEVSFISILYACSHSGLLD-EGWRFFNVMQDECNVKPKLEHYACIVDL 345

Query: 376 NAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
            A+ G +  A +  ++MP   D   + +++ G  IH   + A  + + +    L P+   
Sbjct: 346 LARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFE--LEPENTG 403

Query: 435 FTIVL 439
           + ++L
Sbjct: 404 YYVLL 408



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 15/281 (5%)

Query: 37  LLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           + +  T++  C     L     VH++I +  + Q +  V + +   ++    +  + +VF
Sbjct: 99  IFTITTVLHACACNGSLENGKDVHNYIRENDM-QSNIFVCNALMDMYAKCGSMEDANSVF 157

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
             +   +   WNT++ GYS+NS   E  ++F  ++ E   PD  T   ++ AC+ + S+ 
Sbjct: 158 LEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMK-PDGTTLACILPACASLASLD 216

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +H  ++R G   D  V  +L+D+Y K      AR +FD +P +++++WT MI GY 
Sbjct: 217 RGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYG 276

Query: 214 SVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS--- 266
             G    A T F+ M     E   VS+ +++      G L    + F+ M +   V    
Sbjct: 277 MHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKL 336

Query: 267 --YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG 304
             Y  ++D  A+ G +  A    ++ P + D   W AL+SG
Sbjct: 337 EHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/507 (35%), Positives = 277/507 (54%), Gaps = 40/507 (7%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           N L++  ++ S   +V  ++  L     V D +T+P V++A   +    EG   HAA ++
Sbjct: 15  NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G   D +  +SL+D+Y     +  ARKVFDEMP+R VV W  M+  Y   G   EA  +
Sbjct: 75  TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVAL 134

Query: 225 FD------LMPERSNV--------------------------------SWNALIGGLVKI 246
            +      L P+R  +                                  NAL+   VK 
Sbjct: 135 AEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKN 194

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           G L  A  LF++MP RNVVS+TT++ GYA  G +  AR LF    ++D++ W+A+I+ Y 
Sbjct: 195 GCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYV 254

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           Q+G   EA+ +F DM    ++PD F +V+L++ C+ +G LD    +  +    +M L  A
Sbjct: 255 QHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLD-A 313

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +  AL+DM AKCG+++++ E+FE M  RD  ++ ++I GL+ +G   +A+ LF+ M   
Sbjct: 314 VLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERS 373

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
              PD V F  VL+AC H GLV++G + F AM+ VY I P  EHY+C+V+LLGR G L  
Sbjct: 374 EAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDE 433

Query: 487 AYELLNSMPVEPHA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
           A +L+ S+P+   A   +GAL+ ACK   ++++ E +  R+ +   Q     +L+SN+YA
Sbjct: 434 AEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSNVYA 493

Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCS 572
           TA RW DV  VRSKM    ++K  GCS
Sbjct: 494 TASRWEDVVRVRSKMAHPSVKKNAGCS 520



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 191/434 (44%), Gaps = 46/434 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L  I   ++     + H+  +K G   D    +  + + +++   L  +  VF+ +    
Sbjct: 53  LRAIGALQISVEGRKAHAATLKTGFRWDAYTASSLMDM-YTMLGRLEAARKVFDEMPQRA 111

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             +WN +L+ Y +  R  E   +   + R    PD+ T    + ACS    +  G  IHA
Sbjct: 112 VVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHA 171

Query: 161 AVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
            +   GV    + V  +L+D+Y K   +  A  +F++MP RNVVSWT ++ GYA  G + 
Sbjct: 172 YMD--GVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVD 229

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PER----------- 262
           +A+ +F    E+  + W A+I   V+ G    A  LF +M      P+R           
Sbjct: 230 KARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCA 289

Query: 263 ----------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
                                 + V  T +ID YAK G +  +  +FE    RD  AW+A
Sbjct: 290 NLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTA 349

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +I G A NGQ   A+++F DM     +PD    + ++SAC   G +D        +   +
Sbjct: 350 IICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVY 409

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVS-YCSMIKGLSIHGHGRQAVS 418
               R    + LV++  + G +D A +L +++P N+D +  + ++I      G+ + +  
Sbjct: 410 RIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSER 469

Query: 419 LFDRMLSEGLT-PD 431
           L  R+  +G   PD
Sbjct: 470 LTKRIGKQGYQIPD 483



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 141/297 (47%), Gaps = 25/297 (8%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  +  +  +F++    +  +W  ++  Y Q+  FIE  ++F  +   +  PD++T 
Sbjct: 222 YAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTV 281

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             ++  C+++ ++ +G  IH       +  D  +GT+LID+Y K   +  + +VF+ M  
Sbjct: 282 VTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEG 341

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI----------GGLVKIG-- 247
           R+  +WTA+I G A+ G    A  +F+ M ERS    +++           GGLV  G  
Sbjct: 342 RDTKAWTAIICGLATNGQAGRALELFEDM-ERSEAKPDSVTFIGVLSACCHGGLVDEGRK 400

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVA-WSALISGY 305
             R+ ++++   P   V  Y+ +++   + G +  A  L ++ P ++D +  + ALI+  
Sbjct: 401 QFRAMKEVYRIRP--RVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITAC 458

Query: 306 AQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
              G    + ++   +  +  Q PD  +L+S + A +       S W D    RS M
Sbjct: 459 KAQGNVKMSERLTKRIGKQGYQIPDVNLLMSNVYATA-------SRWEDVVRVRSKM 508


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 288/494 (58%), Gaps = 12/494 (2%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           S  VF  I   N   W +++ GY +N  + E   +F R+     + ++YT+  ++ AC+ 
Sbjct: 207 SYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTK 266

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           + ++ +G   H  +I+ G++    + TSL+D+Y K  +IS AR+VF+E    ++V WTAM
Sbjct: 267 LRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAM 326

Query: 209 IVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFD-----EM 259
           IVGY   G + EA ++F  M     + + V+  +++ G   +G+L   R +        +
Sbjct: 327 IVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI 386

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
            + NV +   ++  YAK      A+ +FE   ++D+VAW+++ISG++QNG   EA+ +F 
Sbjct: 387 WDTNVAN--ALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFH 444

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAHVIAALVDMNAK 378
            M +++V P+   + SL SAC+ +G+L + + + +Y +    +  S  HV  AL+D  AK
Sbjct: 445 RMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAK 504

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG+ + A  +F+T+  ++ +++ +MI G    G  + ++ LF+ ML +   P+E  FT V
Sbjct: 505 CGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSV 564

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           L+ACSH G+V +G ++F +M   Y   PS +HY CMVD+L R G L+ A +++  MP++P
Sbjct: 565 LSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQP 624

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
               +GA L  C ++S  +LGE+V  ++ +L P +A  YVL+SN+YA+  RW     VR+
Sbjct: 625 DVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRN 684

Query: 559 KMKERGLRKIPGCS 572
            MK+RGL KI G S
Sbjct: 685 LMKQRGLSKIAGHS 698



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 145/500 (29%), Positives = 239/500 (47%), Gaps = 19/500 (3%)

Query: 20  LPNCSRSAPINFPKPS-CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           LP  +  + +N+     C L    L+ KC     L Q H  +   GL  D S+    +SL
Sbjct: 42  LPEDNDESSLNYAASRPCFL----LLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVSL 97

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
             S       +  VF++I  P+ +LW  +L+ Y  N+   EV   +  L++     D   
Sbjct: 98  YGSFGYTKD-ARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIV 156

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F   +KAC+ V  +  G  IH  +++    ++V V T L+D+Y K  EI  + KVF+++ 
Sbjct: 157 FSKALKACTEVQDLDNGKKIHCQIVKVPSFDNV-VLTGLLDMYAKCGEIKSSYKVFEDIT 215

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV-KIGDLRSARQ--- 254
            RNVV WT+MI GY       E   +F+ M E S +      G LV     LR+  Q   
Sbjct: 216 LRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKW 275

Query: 255 ----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
               L     E +    T+++D Y K GD+++AR +F      D+V W+A+I GY  NG 
Sbjct: 276 FHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGS 335

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            +EA+ +F  M    ++P+   + S++S C  VGNL+L   +     +  + +   +V  
Sbjct: 336 VNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIK--VGIWDTNVAN 393

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           ALV M AKC     A  +FE    +D+V++ S+I G S +G   +A+ LF RM +E + P
Sbjct: 394 ALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMP 453

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYE 489
           + V    + +AC+ +G +  G         +  +  S  H    ++D   + G  +SA  
Sbjct: 454 NGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARL 513

Query: 490 LLNSMPVEPHASAWGALLGA 509
           + +++  E +   W A++G 
Sbjct: 514 IFDTIE-EKNTITWSAMIGG 532


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 302/589 (51%), Gaps = 88/589 (14%)

Query: 25  RSAPINFPKPSCLLSALT-LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA 83
           R+ P    +  CL+ A+  L KK KL   +  +  ++ ++GL  D   +A  +  C   +
Sbjct: 15  RTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLE-NLARRGLRLDSRTLASLLQHCAD-S 72

Query: 84  TPLSYSTAV-----FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
             L     V        +  P TFL N L+  Y++  + +E   +F          DK  
Sbjct: 73  RALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVF----------DK-- 120

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
                      +S R                +++   +++  Y K   I  ARK+FD+MP
Sbjct: 121 -----------MSAR----------------NLYSWNNMLSGYAKLGMIKPARKLFDKMP 153

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-------------------------RSN 233
           E++VVSW  M++ +A  G   EA   +    +                            
Sbjct: 154 EKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQ 213

Query: 234 VSWNALIGGL--------------VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           V    L+ G               VK G +  AR+LFDEM  R+V+++TTM+ GYAK GD
Sbjct: 214 VHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGD 273

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M SA  LF   P+++ V+W+ALISGYA+NG   +A+++F+ M   +V+PD+F   S + A
Sbjct: 274 MKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVV 398
           C+ + +L     + +YL R +       V++AL+DM +KCG++    ++F+ M N+ DVV
Sbjct: 334 CASIASLKHGKQIHAYLLRINFQ-PNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVV 392

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            + ++I  L+ HG G +A+ + D M+  G  PD++ F ++L ACSH GLV+ G  FFE+M
Sbjct: 393 LWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESM 452

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              Y IVPS EHYAC++DLLGR G  +   + L  MP +P    W ALLG C+++  IEL
Sbjct: 453 SCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIEL 512

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           G   A RL ELEPQ++ +YVLLS+IYA   RW  V  VR  M ER ++K
Sbjct: 513 GRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKK 561


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 299/524 (57%), Gaps = 8/524 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+ +IK GL+     V + +   +S +  +S + AVF+ + N N   WN+++ G+  N
Sbjct: 214 QVHTMVIKSGLDST-IFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTN 272

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              +E F +F R+  E     +  F  VIK C+++  +     +H  VI+ G D D+ + 
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332

Query: 175 TSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-- 231
           T+L+  Y K  EI  A K+F  M   +NVVSWTA+I GY   G    A  +F  M     
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGV 392

Query: 232 --SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
             ++ +++ ++     +   +    +     E +    T + D Y+K+GD   A  +FE 
Sbjct: 393 RPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFEL 452

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ-VGNLDL 348
             ++D+VAWSA++SGYAQ G  + AVKIF  +  + V+P+EF   S+++AC+    +++ 
Sbjct: 453 IDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQ 512

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
                S   +S    +   V +ALV M AK GN++ A E+F+   +RD+VS+ SMI G +
Sbjct: 513 GKQFHSCSIKSGFSNALC-VSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYA 571

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
            HG G++++ +F+ M S+ L  D + F  V++AC+H GLV +G R+F+ M   Y IVP+ 
Sbjct: 572 QHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTM 631

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           EHY+CMVDL  R G L+ A +L+N MP    A+ W  LL AC+++ +++LGEL A +L  
Sbjct: 632 EHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLIS 691

Query: 529 LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+PQ++ +YVLLSNIYATA  W +   VR  M  + ++K  G S
Sbjct: 692 LQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYS 735



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 238/467 (50%), Gaps = 26/467 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH   IK G  +D S+    + + +     +     VF+ +   N   W +LL GY QN
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDM-YMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   +F ++  E   P+ +TF  V+   +   +V +G  +H  VI+ G+D  +FVG
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            S++++Y K   +S A+ VFD M  RN VSW +MI G+ + G  +EA  +F  M      
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 235 SWNALIGGLVK----IGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSARSL 286
               +   ++K    I ++  A+QL  ++     + ++   T ++  Y+K  ++  A  L
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 287 FEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           F      ++VV+W+A+ISGY QNG+ D A+ +F  M  + V+P+ F   ++++A + V  
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS- 410

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
               + + + + +++ + S + V  AL D  +K G+ + AA++FE +  +D+V++ +M+ 
Sbjct: 411 ---PSQIHALVVKTNYENSPS-VGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAI 464
           G +  G    AV +F ++  EG+ P+E  F+ VL AC+     VE G +F        +I
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC-----SI 521

Query: 465 VPSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                +  C    +V +  + G+++SA E+     V+    +W +++
Sbjct: 522 KSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMI 567



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 215/431 (49%), Gaps = 34/431 (7%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           N LL  +S+N +  E   +F+ L R  +  D  +   V+K C  +     G  +H   I+
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G  EDV VGTSL+D+Y K + +    +VFDEM  +NVVSWT+++ GY   G   +A  +
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 225 FDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDGYAK 276
           F  M     + +  ++ A++GGL   G +    Q+   + +  + S      +M++ Y+K
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSK 240

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
              ++ A+++F++  +R+ V+W+++I+G+  NG   EA ++F  M  + V+  + I  ++
Sbjct: 241 SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-R 395
           +  C+ +  +  +  +   + ++  D    ++  AL+   +KC  +D A +LF  M   +
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFD-LNIKTALMVAYSKCSEIDDAFKLFCMMHGVQ 359

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +VVS+ ++I G   +G   +A++LF +M  EG+ P+   ++ +LTA + V          
Sbjct: 360 NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV---------- 409

Query: 456 EAMQNVYAIV------PSPEHYACMVDLLGRTGHLKSA---YELLNSMPVEPHASAWGAL 506
            +   ++A+V       SP     + D   + G    A   +EL++    E    AW A+
Sbjct: 410 -SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELID----EKDIVAWSAM 464

Query: 507 LGACKLYSDIE 517
           L       DIE
Sbjct: 465 LSGYAQMGDIE 475


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/552 (31%), Positives = 309/552 (55%), Gaps = 20/552 (3%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIV 97
           + L+ ++KCK    L Q+HS +IK  + ++    +  I  C +S    + Y+  VF++  
Sbjct: 7   TILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTD 66

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
               ++WN+++KGY           ++  + R+   PD +TFP V+K CS +  +  G +
Sbjct: 67  QLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQS 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  +++ G + DV+  + L+++Y    +++   KVF+ +P+ NVV+WT++I G+ +   
Sbjct: 127 VHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQ 186

Query: 218 LVEAKTVFDLMPERSNVSWNAL----------------IGGLVKIGDLRSARQLFDEMPE 261
             EA  +F  M E   V  N +                 G LV+    +     F     
Sbjct: 187 PKEALRLFKDM-ENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSR 245

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            NV+  T ++D YAK G + +AR+LF+  P R++V W+++IS ++Q G+  EA+++F DM
Sbjct: 246 FNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDM 305

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
                 P++   +S++ AC+ +        + + + +++     A +  AL+DM AK G+
Sbjct: 306 ELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVA-IGTALMDMYAKSGD 364

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLT 440
            D A ++F  +  +DV+++ +MI GL+I G G++A+++F RM  E  + PD++ +  VL 
Sbjct: 365 ADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLW 424

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH+GLVE+G + F +M  VY I P+ EHY CM+DLL R GH + A ELL  MP +P+A
Sbjct: 425 ACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNA 484

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           +   ++L  C++Y ++ L   V + + EL+  ++G YVLLSNI+A A  W ++ L R  +
Sbjct: 485 TILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDIL 544

Query: 561 KERGLRKIPGCS 572
           K + + K  G S
Sbjct: 545 KHKKIGKTLGNS 556


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/390 (41%), Positives = 242/390 (62%), Gaps = 5/390 (1%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I  AR+VF  MP ++V SW  M+ G +  G   EA  +F +MP R+ VSWNA++  L  
Sbjct: 92  DIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALAC 151

Query: 246 IGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
            GD+ +A  LF   PE+ + + +T M+ GY   G++  A   F A P R++V+W+A+++G
Sbjct: 152 SGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAG 211

Query: 305 YAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           Y +N + D+A+++F  M   + VQP+   L S++  CS +  L     V  +  +  + L
Sbjct: 212 YVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMK--LPL 269

Query: 364 SR-AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
           SR   V  +L+ M  KCG+++ A ++F+ M  +D+V++ +MI G + HG G QA+ LF++
Sbjct: 270 SRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEK 329

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M  EG+ PD +    VLTAC H GL + G + FE MQ  Y I P  +HY+CMVDLL R G
Sbjct: 330 MKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAG 389

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
            L+ A  +++SMP EPH SA+G LL AC++Y ++E  E  A +L E +PQNAG+YV L+N
Sbjct: 390 LLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLAN 449

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           IYA A++W DV  VR  MK+  + K PG S
Sbjct: 450 IYAVANKWADVSRVRRWMKDNAVVKTPGYS 479



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 16/324 (4%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           CH     +  +  VF+ +   +   WNT++ G S+N    E   +F  +    AV   + 
Sbjct: 86  CHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAV--SWN 143

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
             +   ACS  +   E    +A         D  + T+++  Y     +  A + F  MP
Sbjct: 144 AMVAALACSGDMGAAEDLFRNAPE-----KTDAILWTAMVSGYMDTGNVQKAMEFFGAMP 198

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA------LIG--GLVKIGDLR 250
            RN+VSW A++ GY       +A  VF  M E S V  NA      L+G   L  +G  R
Sbjct: 199 VRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGR 258

Query: 251 SARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
              Q   ++P  RNV   T+++  Y K GD+  A  +F+    +D+VAW+A+ISGYAQ+G
Sbjct: 259 QVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHG 318

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
              +A+K+F  M  + V PD   L+++++AC   G  D        +  ++    +    
Sbjct: 319 GGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHY 378

Query: 370 AALVDMNAKCGNMDRAAELFETMP 393
           + +VD+  + G ++RA  +  +MP
Sbjct: 379 SCMVDLLCRAGLLERAVNMIHSMP 402



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 136/327 (41%), Gaps = 55/327 (16%)

Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV---------------------- 277
           +   V+ GDL  A + F     +   +Y  ++ GYAK                       
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 278 ------------GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
                       GD+  AR +F   P +DV +W+ ++SG ++NG  +EA  +F  M  +N
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN 138

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
                 ++ +L  ACS     D+    D  L R+  + + A +  A+V      GN+ +A
Sbjct: 139 AVSWNAMVAAL--ACSG----DMGAAED--LFRNAPEKTDAILWTAMVSGYMDTGNVQKA 190

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSH 444
            E F  MP R++VS+ +++ G   +     A+ +F  M+ + +  P+    + VL  CS+
Sbjct: 191 MEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSN 250

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG---RTGHLKSAYELLNSMPVEPHAS 501
           +  +  G +  +        +P   +      LL    + G L  A ++ + M  +    
Sbjct: 251 LSALGFGRQVHQWCMK----LPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK-DIV 305

Query: 502 AWGALLGACKLYSDIELGELVANRLFE 528
           AW A++     +     G + A +LFE
Sbjct: 306 AWNAMISGYAQHG----GGMQAIKLFE 328



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 52/245 (21%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG---QPDEAVKIFSDMCSK 324
           T  +    + GD+  A   F +   +    ++ L++GYA+     +  +A ++F  +   
Sbjct: 16  TVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSI--- 72

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
              PD     +L+S                                     +  CG++D 
Sbjct: 73  -PHPDTVSYNTLLSC------------------------------------HFACGDIDG 95

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F TMP +DV S+ +M+ GLS +G   +A ++F R++         A    L     
Sbjct: 96  ARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMF-RIMPVRNAVSWNAMVAALACSGD 154

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           +G  ED +R   A +   AI+     +  MV     TG+++ A E   +MPV    S W 
Sbjct: 155 MGAAEDLFR--NAPEKTDAIL-----WTAMVSGYMDTGNVQKAMEFFGAMPVRNLVS-WN 206

Query: 505 ALLGA 509
           A++  
Sbjct: 207 AVVAG 211


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 296/523 (56%), Gaps = 44/523 (8%)

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIE--VFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +R+   N F+WNT+++   +N           +++ +R    P+ +TF  ++KA      
Sbjct: 47  SRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE 106

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           V+EG  +HA+V+R G     FV  +L+  Y     +   R+VFDEM +  +V WT +I  
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166

Query: 212 YASV-----------------------------------GDLVEAKTVFDLMPERSNVSW 236
           Y  V                                   GDL  AK +   + E+S +  
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFI-EKSGIEV 225

Query: 237 NA-----LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           +A     LI    + G L  A + F E P +N+V + TMI    +  ++   + LF++ P
Sbjct: 226 DAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMP 285

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           DRDVV+W+++I G+A+ GQ  EA+  F +M    V P+   L+S +SAC+  G LD   W
Sbjct: 286 DRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAW 345

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           + +Y+ ++ M+     + ++L+DM +KCG++D+A ++FE    RD+ ++ S++ GL++HG
Sbjct: 346 IHAYVDKNDMN-RDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHG 404

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
            G +A+  F +M    + PD+V    VL+AC+H GL++ GW +F++M+ V+ +VP  EHY
Sbjct: 405 RGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY 464

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
            CMVDLLGR G LK AY+L+  MP+E +   WGA L AC++++++ELGE+ A RL  L+P
Sbjct: 465 GCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDP 524

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++  + V+LSN+YA   +W     +R ++K++GL+K PGCSS+
Sbjct: 525 RDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 170/382 (44%), Gaps = 48/382 (12%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY--- 111
           +VH+ +++ G      +    +   +     +     VF+ +  P   LW  +++ Y   
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGF-YVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV 170

Query: 112 SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           +   + +E+F    R +RE  + PD      V+ AC  +  +    A+H  + + G++ D
Sbjct: 171 TFPEKALELF----RTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            FV ++LI  YG+   +  A + F E P +N+V W  MI       +L   K +F  MP+
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMP------------------------------ 260
           R  VSWN++IGG  +IG  + A   F EM                               
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 261 ---------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
                     R+    +++ID Y+K GD+  A  +FE +  RD+  W++++ G A +G+ 
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRG 406

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           ++A+  FS M    VQPD+  +V ++SAC+  G LD   W    + +    + +      
Sbjct: 407 EKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGC 466

Query: 372 LVDMNAKCGNMDRAAELFETMP 393
           +VD+  + G +  A +L   MP
Sbjct: 467 MVDLLGRMGCLKEAYDLIMGMP 488



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L     +F  + + +   WN+++ G+++  ++ E  T F  +      P+  T    + A
Sbjct: 274 LELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSA 333

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   ++  G  IHA V +  ++ D  + +SLID+Y K  +I  A ++F+E   R++ +W
Sbjct: 334 CASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTW 393

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           T+++ G A  G   +A   F  M E      +V+   ++      G L      F  M +
Sbjct: 394 TSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453

Query: 262 -----RNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
                  V  Y  M+D   ++G +  A  L    P + + + W A +S
Sbjct: 454 VFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLS 501



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+++ K  + +D SL +  I + +S    +  +  +F      + F W +++ G + + 
Sbjct: 346 IHAYVDKNDMNRDGSLDSSLIDM-YSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHG 404

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
           R  +    F ++   +  PD  T   V+ AC+H   + +G     ++ + +G+   V   
Sbjct: 405 RGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY 464

Query: 175 TSLIDLYGKRKEISCARKVFD---EMP-ERNVVSWTAMI 209
             ++DL G+   + C ++ +D    MP E N + W A +
Sbjct: 465 GCMVDLLGR---MGCLKEAYDLIMGMPMEANEIIWGAFL 500


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 206/653 (31%), Positives = 322/653 (49%), Gaps = 124/653 (18%)

Query: 42  TLIKKCKLQTHL-----HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
           +L++ C LQ+ +       VH+H+I  G +    ++   I + +S ++ L+Y+  +F+ I
Sbjct: 16  SLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDI-YSKSSKLNYARYLFDEI 74

Query: 97  VNPN---------------------------------TFLWNTLLKGYSQNSRFIEVFTI 123
             P+                                 +  +N ++  YS N        +
Sbjct: 75  PQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIEL 134

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSV-REGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
           F  + R+   PD YTF  V+ A + V    +    +H AV++ G      V  +LI  Y 
Sbjct: 135 FCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYV 194

Query: 183 K---------RKEISCARKVFDEMPERNVVSWT--------------------------- 206
           K            ++ ARK+FDEMP R+ +SWT                           
Sbjct: 195 KCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLG 254

Query: 207 ----AMIVGYASVGDLVEA----------------------------------------- 221
               AMI GYA  G  +EA                                         
Sbjct: 255 VAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAY 314

Query: 222 --KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
             KTV +  P+ +    NALI    K G +  A+++F++MPER++VS+  ++ GY  V  
Sbjct: 315 FLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRC 374

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           M  A+S F   P++++++W  +ISG AQ G  +EA+K F+ M  +  +P ++     + +
Sbjct: 375 MDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIIS 434

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           CS +G+L     + + + R   + S +    AL+ M A+CG +D A  LF  MP  D +S
Sbjct: 435 CSVLGSLKHGRQLHAQVVRYGYESSLS-AGNALITMYARCGVVDAAHCLFINMPCVDAIS 493

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI  L  HG G QA+ LF+ ML EG+ PD ++F  V++ACSH GLV++G ++F++M 
Sbjct: 494 WNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMH 553

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           NVY + P  EHYA ++DLL R G    A E++ SMP EP A  W ALL  C+++ +I+LG
Sbjct: 554 NVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLG 613

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              A RLFEL+PQ+ G+YVLLSN+YA A +W D+  VR  M++RG++K PGCS
Sbjct: 614 IEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCS 666


>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 429

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/416 (39%), Positives = 269/416 (64%), Gaps = 13/416 (3%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLA---------TPLSYSTAVF-NRIVNPNTFLWNTLLK 109
           +++  +E + +++A FI++   LA           + ++  VF NR    +TFL N+++K
Sbjct: 1   MLRSAVESNVNILAKFITISGCLALIPSVYESLAIIQHARQVFDNRPHKDDTFLCNSMIK 60

Query: 110 GYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            +    +F E FT++  L +    +PD +TF  + K+C   ++V EG  IH  V++ G  
Sbjct: 61  AHVGMRQFYESFTLYQDLRKGTGFLPDNFTFTALAKSCGLNMAVWEGFEIHNHVLKMGFG 120

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            D++V T+L+D+Y K  E+  ARK+FDEM ER VVSWTA+I G    GD+  A+ +FD M
Sbjct: 121 LDLYVSTALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQM 180

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
           PE+ + ++NA++ G VK GD+ SA+ LFD+MP RNV+S+T+MI GY   GD+ +ARSLF+
Sbjct: 181 PEKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSGGDVLTARSLFD 240

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV-QPDEFILVSLMSACSQVGNLD 347
           A P+R++ +W+A+I GY+QN +  EA+K+F +M S+ + +PD+  +VS++ A + +G LD
Sbjct: 241 AMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAIADLGALD 300

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L +W+  +     +D S  +V  ALVDM AKCG M +A  +F++MP ++  S+ ++I G 
Sbjct: 301 LGSWIHQFARLKKIDRS-INVCTALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGF 359

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           +++G   +A++ F  M  EG+ P++V    VL+AC+H GLVE+G R+F+AM    A
Sbjct: 360 AVNGCADEALTAFSEMKREGVKPNDVTMISVLSACNHGGLVEEGKRWFKAMYEFVA 415



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 34/77 (44%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +       WN L+ G++ N    E  T F  + RE   P+  T   V+ AC+H   
Sbjct: 340 VFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVKPNDVTMISVLSACNHGGL 399

Query: 152 VREGTAIHAAVIRWGVD 168
           V EG     A+  +  D
Sbjct: 400 VEEGKRWFKAMYEFVAD 416


>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/539 (34%), Positives = 283/539 (52%), Gaps = 69/539 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIVNP 99
           L L+ KC     L Q H+ ++K GL   + +++  ++ C  S    LS++  +F  I +P
Sbjct: 9   LLLLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHP 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
              ++NT++K       F+    +F  + R    PD YT P V+KA + + ++  G +IH
Sbjct: 69  TICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIH 128

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A  I+        +G+++ +  G                        +++V Y S     
Sbjct: 129 ACTIK--------LGSAVNEFVG-----------------------NSLLVMYRS----- 152

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                FD                     ++RSARQ+FDEMPE + VS+T MI GYA +GD
Sbjct: 153 -----FD---------------------NMRSARQVFDEMPELSAVSWTVMIYGYANMGD 186

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           + +AR LF+ A  +D   W A+ISGY QN    E + +F  M    V+PDE I+V+++SA
Sbjct: 187 VDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSA 246

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G LD   W+  YL R  + L+   V   L+DM AKCG++D A  LF  M  RD V 
Sbjct: 247 CAHMGALDTGIWIHRYLGRLGLPLT-LRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVC 305

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI G+++ G G  A+ LF  M   G+ PD + F  VL ACS+ G+V++G R +  M 
Sbjct: 306 WNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMS 365

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV----EPHASAWGALLGACKLYSD 515
            V+ I P  EHY C++DLL R G  + A  ++  +P        A AW A L AC  +  
Sbjct: 366 TVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQ 425

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            +  E+ A RLF+LE +++G+YVLLSN+YA   +  D   VR+ MK +G+ K+PGCSS+
Sbjct: 426 TQQAEVAAERLFQLE-RHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSI 483


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 280/502 (55%), Gaps = 20/502 (3%)

Query: 89   STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
            +T  +  +   N   WN+++   ++    +E    F  L +   +P + +FP  IK+CS 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 149  VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
            +  +  G   H     +G + D+FV ++LID+Y K  ++  AR +FDE+P RNVVSWT+M
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 209  IVGYASVGDLVEAKTVF-DLMPERSNVS--WNALIGGLVKIGDLRSARQLFDEMPERNVV 265
            I GY        A  +F D + E + V    N  +  +V +  L +  ++  +     V 
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 266  SY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
             +              T++D YAK G    ++ +F+   ++D ++W+++I+ YAQ+G   
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 313  EAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIA 370
            EA+++F  M     V+ +   L +++ AC+  G L     +   + +  MDL     V  
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK--MDLEYNVCVGT 2265

Query: 371  ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
            +++DM  KCG ++ A + F+ M  ++V S+ +M+ G  +HG  ++A+ +F +M+  G+ P
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325

Query: 431  DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
            + + F  VL ACSH GLVE+GW +F AM++ Y I P  EHY CMVDL GR G L  AY L
Sbjct: 2326 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 2385

Query: 491  LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
            +  M ++P    WG+LLGAC+++ +++LGE+ A +LFEL+P N G YVLLSN+YA A RW
Sbjct: 2386 IKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRW 2445

Query: 551  LDVCLVRSKMKERGLRKIPGCS 572
             DV  +R  MK R L K PG S
Sbjct: 2446 ADVERMRMLMKNRQLVKPPGFS 2467



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 228/450 (50%), Gaps = 64/450 (14%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           AL L++ CK   HL Q+H+ II+ GL  D  L    I L                     
Sbjct: 30  ALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHL--------------------- 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
                      YS + R      +F ++      P  +T+ L+I+A +      +   ++
Sbjct: 69  -----------YSTHGRIAYAILLFYQIQN----PCTFTWNLIIRANTINGLSEQALMLY 113

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             ++  G+  D F    +I                     +   ++ ++ +G    G L+
Sbjct: 114 KNMVCQGIAADKFTFPFVI---------------------KACTNFLSIDLGKVVHGSLI 152

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           +     D+  +      N LI    K G  R A ++F++M  RNVVS+TT+I G    GD
Sbjct: 153 KYGFSGDVFVQ------NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR +F+  P ++VV+W+A+I+GY +N QP+EA+++F  M ++N+ P+E+ +VSL+ A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+++G L L   +  Y  ++ +++   ++  AL+DM +KCG++  A E+FETMP + + +
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIG-VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + SMI  L +HG G++A++LF  M    + PD + F  VL AC H+  V++G  +F  M 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
             Y I P PEHY CM +L  R+ +L  A++
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 210/448 (46%), Gaps = 35/448 (7%)

Query: 57   HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSR 116
            H      G E D  + +  I + +S    L  + A+F+ I   N   W +++ GY QN +
Sbjct: 2038 HQQAFVFGFETDLFVSSALIDM-YSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQ 2096

Query: 117  FIEVFTIFVRLIREEA-VPDKYTFPL-------VIKACSHVLSVREGTAIHAAVIRWGVD 168
                  +F   + EE  V D    PL       V+ ACS V        +H  V++ G D
Sbjct: 2097 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFD 2156

Query: 169  EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
              + VG +L+D Y K  +   ++KVFD M E++ +SW +MI  YA  G   EA  VF  M
Sbjct: 2157 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 2216

Query: 229  PERSNVSWNALIGGLVKI-----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGD 279
                 V +NA+    V +     G LR+ + + D++     E NV   T++ID Y K G 
Sbjct: 2217 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 2276

Query: 280  MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
            +  A+  F+   +++V +W+A+++GY  +G+  EA+ IF  M    V+P+    VS+++A
Sbjct: 2277 VEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAA 2336

Query: 340  CSQVGNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DV 397
            CS  G ++   +W ++   +  ++    H    +VD+  + G ++ A  L + M  + D 
Sbjct: 2337 CSHAGLVEEGWHWFNAMKHKYDIEPGIEHY-GCMVDLFGRAGCLNEAYNLIKRMKMKPDF 2395

Query: 398  VSYCSMIKGLSIHGH---GR-QAVSLFDRMLSEGLTPDEVAFTIVLTAC-SHVGLVEDGW 452
            V + S++    IH +   G   A  LF+      L PD   + ++L+   +  G   D  
Sbjct: 2396 VVWGSLLGACRIHKNVDLGEIAAQKLFE------LDPDNCGYYVLLSNLYADAGRWADVE 2449

Query: 453  RFFEAMQNVYAIVPSPEHYACMVDLLGR 480
            R    M+N   + P       +V+L GR
Sbjct: 2450 RMRMLMKNRQLVKPPG---FSLVELKGR 2474



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 32/351 (9%)

Query: 182  GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD------LMPERSNVS 235
            G+    + A   +  + + NV SW ++I   A  GD VEA   F       L+P RS  S
Sbjct: 1960 GREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS--S 2017

Query: 236  WNALIGGLVKIGDLRSAR----QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
            +   I     + DL S R    Q F    E ++   + +ID Y+K G +  AR+LF+  P
Sbjct: 2018 FPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 2077

Query: 292  DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--------NVQPDEFILVSLMSACSQV 343
             R+VV+W+++I+GY QN Q D A+ +F D   +        NV  D  ++VS++SACS+V
Sbjct: 2078 LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 2137

Query: 344  GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
                ++  V  ++ +   D S   V   L+D  AKCG    + ++F+ M  +D +S+ SM
Sbjct: 2138 SGKGITEGVHGFVVKKGFDGSIG-VGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSM 2196

Query: 404  IKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
            I   +  G   +A+ +F  M+   G+  + V  + VL AC+H G +  G    + +    
Sbjct: 2197 IAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV---- 2252

Query: 463  AIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
             I    E+  C    ++D+  + G ++ A +  + M  E +  +W A++  
Sbjct: 2253 -IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAG 2301



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 45/299 (15%)

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y+  G +  A  LF    +     W+ +I     NG  ++A+ ++ +M  + +  D
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 330 EFILVSLMSACSQVGNLDL--------------------SNWVDSYLSRSHMDL------ 363
           +F    ++ AC+   ++DL                    +N +D Y    H         
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 364 --------SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
                   S   VI+ L+     CG++  A  +F+ +P+++VVS+ +MI G   +    +
Sbjct: 185 KMRVRNVVSWTTVISGLIS----CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEE 240

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACM 474
           A+ LF RM +E + P+E     ++ AC+ +G++  G    + A++N   I         +
Sbjct: 241 ALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI--GVYLGTAL 298

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           +D+  + G +K A E+  +MP       W +++ +  ++    LG+   N   E+E  N
Sbjct: 299 IDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVHG---LGQEALNLFSEMERVN 353



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 31/186 (16%)

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+ + +  G +  A  LF  + N    ++  +I+  +I+G   QA+ L+  M+ +G+  D
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 432 EVAFTIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           +  F  V+ AC+           H  L++ G+     +QN             ++D   +
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN------------NLIDFYFK 172

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV-ANRLF-ELEPQNAGSYV 538
            GH + A ++   M V  +  +W  ++        I  G+L  A R+F E+  +N  S+ 
Sbjct: 173 CGHTRFALKVFEKMRVR-NVVSWTTVISGL-----ISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 539 LLSNIY 544
            + N Y
Sbjct: 227 AMINGY 232


>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 500

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 170/519 (32%), Positives = 284/519 (54%), Gaps = 63/519 (12%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISL-CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
           ++H+H+I  GL Q  + +   I+L   S ++ L ++  +F+ I +P+T+L+NT+ + Y+ 
Sbjct: 6   RLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMFRVYAA 65

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           +   +    +   ++R    PD YTFP ++KACS +  + +G  +H   +++G+   VFV
Sbjct: 66  SPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVFV 125

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
             SLI LYG    +  AR+VF                               D M  R  
Sbjct: 126 ENSLIHLYGSNSGMDSARRVF-------------------------------DGMGYRDI 154

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
            SW  L+        +++AR++FDEMPER+V+SY+ M                       
Sbjct: 155 ASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAM----------------------- 191

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
                   I+ Y +  +  EA+ +F ++ S  ++P +  ++S++ AC+ +G LD+  WV 
Sbjct: 192 --------IAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVY 243

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           SY+ +S  D   + +  AL+DM  KCG+++ A  +FE    + V  + +M+ GL++HG G
Sbjct: 244 SYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLG 303

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            Q +  F++M+  G+ P+ V F  +L+ CSH GLV +G  +F+ M++ + + P+ EH+ C
Sbjct: 304 EQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGC 363

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           +VDLLGR G +  A +L++ MP EP+A+ WG+LL AC++Y ++E+GEL A  L + EP N
Sbjct: 364 VVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIKDEPWN 423

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              Y+ L ++Y  A RW +V  V+ KMKE G RK PGCS
Sbjct: 424 GALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCS 462



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIK-KGLEQDHSLVAHFISLCHSLATPLSYST 90
           P  SC++S L              V+S++ + KG   D  +    I +     + + ++ 
Sbjct: 218 PSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGS-IEHAL 276

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            VF      +   W  +L G + +    ++   F +++     P+  TF  ++  CSH  
Sbjct: 277 LVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSG 336

Query: 151 SVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM 208
            V EG      +   +GV+  V     ++DL G+   I  A ++  EMP E N   W ++
Sbjct: 337 LVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSL 396

Query: 209 I 209
           +
Sbjct: 397 L 397


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 185/533 (34%), Positives = 288/533 (54%), Gaps = 23/533 (4%)

Query: 56   VHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
            VH+H+IK     D     + V  F+  C+S+     Y+  VF R+   +   WN +L G+
Sbjct: 680  VHAHLIKSPFWSDVFVGTATVDMFVK-CNSV----DYAAKVFERMPERDATTWNAMLSGF 734

Query: 112  SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
             Q+    + F++F  +   E  PD  T   +I++ S   S++   A+HA  IR GVD  V
Sbjct: 735  CQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQV 794

Query: 172  FVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM- 228
             V  + I  YGK  ++  A+ VF+  +  +R VVSW +M   Y+  G+  +A  ++ LM 
Sbjct: 795  TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 854

Query: 229  -----PERSNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGD 279
                 P+ S  ++  L         L   R +         ++++ +  T I  Y+K  D
Sbjct: 855  REEFKPDLS--TFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSED 912

Query: 280  MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
              SAR LF+    R  V+W+ +ISGYA+ G  DEA+ +F  M     +PD   L+SL+S 
Sbjct: 913  TCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISG 972

Query: 340  CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
            C + G+L+   W+D+             +  AL+DM +KCG++  A ++F+  P + VV+
Sbjct: 973  CGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVT 1032

Query: 400  YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
            + +MI G +++G   +A+ LF +M+     P+ + F  VL AC+H G +E GW +F  M+
Sbjct: 1033 WTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMK 1092

Query: 460  NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             VY I P  +HY+CMVDLLGR G L+ A EL+ +M  +P A  WGALL ACK++ ++++ 
Sbjct: 1093 QVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIA 1152

Query: 520  ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E  A  LF LEPQ A  YV ++NIYA A  W     +RS MK+R ++K PG S
Sbjct: 1153 EQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGES 1205



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 198/435 (45%), Gaps = 26/435 (5%)

Query: 104  WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
            WN  ++     +  +E   +F  + R    P+ +TFP V KAC+ +  V     +HA +I
Sbjct: 626  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 685

Query: 164  RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
            +     DVFVGT+ +D++ K   +  A KVF+ MPER+  +W AM+ G+   G   +A +
Sbjct: 686  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 745

Query: 224  VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYA 275
            +F  M        +  +  L++      + +L + M         +  V    T I  Y 
Sbjct: 746  LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 805

Query: 276  KVGDMTSARSLFEA--APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
            K GD+ SA+ +FEA    DR VV+W+++   Y+  G+  +A  ++  M  +  +PD    
Sbjct: 806  KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 865

Query: 334  VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            ++L ++C     L     + S+      D      I   + M +K  +   A  LF+ M 
Sbjct: 866  INLAASCQNPETLTQGRLIHSHAIHLGTDQD-IEAINTFISMYSKSEDTCSARLLFDIMT 924

Query: 394  NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +R  VS+  MI G +  G   +A++LF  M+  G  PD V    +++ C   G +E G +
Sbjct: 925  SRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG-K 983

Query: 454  FFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAW-------- 503
            + +A  ++Y          C  ++D+  + G +  A ++ ++ P E     W        
Sbjct: 984  WIDARADIYG-CKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EKTVVTWTTMIAGYA 1041

Query: 504  --GALLGACKLYSDI 516
              G  L A KL+S +
Sbjct: 1042 LNGIFLEALKLFSKM 1056


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 182/543 (33%), Positives = 301/543 (55%), Gaps = 15/543 (2%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           T++K C    +L Q   +HS IIK G E +  +    + +       +  +  VF  I  
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID-AIGVFKTIKK 377

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+  +W+ L+    Q  +  E   +F  +   + +P++YT   ++ A ++  +++ G +I
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA V ++G + DV V  +L+ +Y K   +    K+++ M +R+++SW A + G    G  
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMY 497

Query: 219 VEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLF-----DEMPERNVVSYTT 269
               T+F  M E   +    ++ +++G    + D+   RQ+      +++ + N V  T 
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TA 556

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID YAK   +  A   F     RD+  W+ +I+ YAQ  Q ++A+  F  M  + V+P+
Sbjct: 557 LIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPN 616

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           EF L   +S CS + +L+    + S + +S   +S   V +ALVDM AKCG M+ A  LF
Sbjct: 617 EFTLAGCLSGCSSLASLEGGQQLHSMVFKSG-HVSDMFVGSALVDMYAKCGCMEEAEALF 675

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E +  RD +++ ++I G + +G G +A++ F  ML EG++PD V FT +L+ACSH GLVE
Sbjct: 676 EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G   F +M   + I P+ +H ACMVD+LGR G      + +  M +  +A  W  +LGA
Sbjct: 736 EGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
            K+++++ LGE  AN+LFEL+P+   SY+LLSNI+AT  RW DV  VRS M  +G++K P
Sbjct: 796 SKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEP 855

Query: 570 GCS 572
           GCS
Sbjct: 856 GCS 858



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 235/491 (47%), Gaps = 27/491 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  I+K  +  D  L    +++ ++     +Y+  V  ++ + +   W  L++G     
Sbjct: 134 IHGLIVKDVINPDSHLWVSLVNV-YAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEG 192

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +   +F  +  E  +P+++T    +KACS  +++  G  +HA   + G+  D+FVG+
Sbjct: 193 FANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGS 252

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L+DLY K  EI  A K+F  MPE+N V+W  ++ GYA  GD+     +F  M E     
Sbjct: 253 ALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKC 312

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSARSLF 287
           +  +   ++ G     +L+  + +   +     E N      ++D Y+K G    A  +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +     D+V WSALI+   Q GQ +E++K+F  M   +  P+++ + SL+SA +  GNL 
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               + + + +   +   A V  ALV M  K G +    +L+E+M +RD++S+ + + GL
Sbjct: 433 YGQSIHACVWKYGFETDVA-VSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
              G   + +++F  ML EG  P+   F  +L +CS +  V  G       + V+A +  
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-------RQVHAHIIK 544

Query: 468 PE----HYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
            +    ++ C  ++D+  +  +L+ A    N + V      W  ++     Y+    GE 
Sbjct: 545 NQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD-LFTWTVIITN---YAQTNQGEK 600

Query: 522 VANRLFELEPQ 532
             N   +++ +
Sbjct: 601 ALNYFRQMQQE 611


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 308/540 (57%), Gaps = 25/540 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH++ ++KG E +  ++   +++   L   L+ S  +       +   WNT+L    QN
Sbjct: 136 QVHAYGLRKG-ELNSFIINTLVAMYGKLG-KLASSKVLLGSFGGRDLVTWNTVLSSLCQN 193

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFV 173
            + +E       ++ E   PD++T   V+ ACSH+  +R G  +HA  ++ G +DE+ FV
Sbjct: 194 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 253

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G++L+D+Y   K++   R+VFD M +R +  W AMI GY+      EA  +F  M E + 
Sbjct: 254 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 313

Query: 234 VSWNA-----LIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSAR 284
           +  N+     ++   V+ G       +   + +R +        T++D Y+++G +  A 
Sbjct: 314 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 373

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM------CSK-----NVQPDEFIL 333
            +F    DRD+V W+ +I+GY  +   ++A+ +   M       SK     +++P+   L
Sbjct: 374 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 433

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           ++++ +C+ +  L     + +Y  ++++    A V +ALVDM AKCG +  + ++F+ +P
Sbjct: 434 MTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAKCGCLQMSRKVFDQIP 492

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++V+++  +I    +HG+G++A+ L   M+ +G+ P+EV F  V  ACSH G+V++G R
Sbjct: 493 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 552

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE-PHASAWGALLGACKL 512
            F  M+  Y + PS +HYAC+VDLLGR G +K AY+L+N MP +   A AW +LLGA ++
Sbjct: 553 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 612

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++++E+GE+ A  L +LEP  A  YVLL+NIY++A  W     VR  MKE+G+RK PGCS
Sbjct: 613 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 672



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 234/515 (45%), Gaps = 38/515 (7%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P N+  P+ LL A+  ++  +L     Q+H+H+ K G   D   VA+ +   +       
Sbjct: 8   PDNYAFPA-LLKAVADLQDMELGK---QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
               VF+RI   N   WN+L+       ++      F  ++ E   P  +T   V+ ACS
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 123

Query: 148 HV---LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ++     +  G  +HA  +R G + + F+  +L+ +YGK  +++ ++ +      R++V+
Sbjct: 124 NLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 182

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLF-- 256
           W  ++        L+EA      M      P+   +S  +++     +  LR+ ++L   
Sbjct: 183 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS--SVLPACSHLEMLRTGKELHAY 240

Query: 257 ---DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
              +   + N    + ++D Y     + S R +F+   DR +  W+A+I+GY+QN    E
Sbjct: 241 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 300

Query: 314 AVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           A+ +F  M  S  +  +   +  ++ AC + G       +  ++ +  +D  R  V   L
Sbjct: 301 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR-FVQNTL 359

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM------LSE 426
           +DM ++ G +D A  +F  M +RD+V++ +MI G     H   A+ L  +M      +S+
Sbjct: 360 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 419

Query: 427 G-----LTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMVDLLGR 480
           G     L P+ +    +L +C+ +  +  G      A++N  A   +    + +VD+  +
Sbjct: 420 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAK 477

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            G L+ + ++ + +P + +   W  ++ A  ++ +
Sbjct: 478 CGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 511


>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
          Length = 748

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 265/476 (55%), Gaps = 71/476 (14%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCA 190
           P+ +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +      +  A
Sbjct: 109 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGVGAA 168

Query: 191 RKVFDEM-------------------------------PERNVVSWTAMIVGYASVGDLV 219
           R+VFDEM                               PERNVVSW  ++ G+A +GD+V
Sbjct: 169 RQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMV 228

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A+ VFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T M+  YAK+GD
Sbjct: 229 TARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 288

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSLMS 338
           + +A  LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LVS++S
Sbjct: 289 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 348

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G+++  NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  +F  M  R ++
Sbjct: 349 ACAQLGSVEYCNWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAQSIFYKMETRCII 407

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ +MI G + +G  R A+ +++ M  EG+  D+  F   L AC+H GL+++GW  F  M
Sbjct: 408 TWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEM 467

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              Y I P  EHY CMVDLLGR                                    EL
Sbjct: 468 VERYNIQPRMEHYGCMVDLLGRA-----------------------------------EL 492

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 493 IEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSI 548



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 10/197 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIK 144
           L  +  +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ 
Sbjct: 289 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 348

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +  +   V +G +LID++ K  ++  A+ +F +M  R +++
Sbjct: 349 ACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 408

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT MI G+A  G   +A  V++ M        +  + A +      G L+    +F+EM 
Sbjct: 409 WTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMV 468

Query: 261 ERNVVS-----YTTMID 272
           ER  +      Y  M+D
Sbjct: 469 ERYNIQPRMEHYGCMVD 485



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 45/218 (20%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V P+ F    L+ AC+ +G       V   + R     S   V  AL+D+  +CG   
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALMDVYHRCGGGG 163

Query: 384 R---AAELFETMPNRDVVSYCSM-------------------------------IKGLSI 409
               A ++F+ M +RDVVS+ S+                               + G + 
Sbjct: 164 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 223

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
            G    A ++FDRM S     + V++ ++++  +  G VE     F+ M     +     
Sbjct: 224 MGDMVTARAVFDRMPSR----NAVSWNLMISGYATSGDVEAARSVFDRMDQKDVV----- 274

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            +  MV    + G L +A EL + MPV+   S W A++
Sbjct: 275 SWTAMVSAYAKIGDLDTANELFDHMPVKNLVS-WNAMI 311


>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
 gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
          Length = 529

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 276/511 (54%), Gaps = 43/511 (8%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           N L++  ++   F  V  ++  L     V D YT+P V++A   +    EG  +HAA ++
Sbjct: 15  NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVK 74

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G   D +  +SL+++Y     +  ARKVFDEMP+R +V W  M+  Y   G    A  +
Sbjct: 75  TGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134

Query: 225 FDLMPERSNVS---------------------------------------WNALIGGLVK 245
            + M ERS  +                                        NAL+    K
Sbjct: 135 AEEM-ERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLPVANALLDMYTK 193

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            G L  A ++F +MPERN++S+T ++ GYA  G +  AR LF     +D++ W+A+I+  
Sbjct: 194 NGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINAC 253

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            Q+G  +EA+ +F DM  + V+PD+F +V+L++ C+ +G LD   W+  Y    +M +  
Sbjct: 254 VQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKID- 312

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
           A +  AL++M +KCG++D++ ++F  M  RD  ++ ++I GL+ +G   +A+ LF+ M  
Sbjct: 313 AVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQR 372

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
               PD + F  VL AC H GLV++G R F+AM+ +Y I P  EHY+C+V+LLG  G L 
Sbjct: 373 SKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLLY 432

Query: 486 SAYELLNSMPVEPHA-SAWGALLGACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNI 543
            A +L+  MPV       +GALL ACK Y ++E+ E +  R+ + +  QN    VL+SN+
Sbjct: 433 EAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQNPDVNVLMSNV 492

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           YATA RW +   VRSKM    ++K  GCS +
Sbjct: 493 YATASRWEESIRVRSKMTHPAVKKTAGCSMI 523



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 186/432 (43%), Gaps = 53/432 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L  I   KL     +VH+  +K G   D    +  + + +++   + ++  VF+ +    
Sbjct: 53  LRAIGVMKLSVEGRKVHAAAVKTGFRWDAYTASSLLEM-YTMLGRVDFARKVFDEMPQRF 111

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
             LWN +++ Y +  RF     +   + R  A PD+ T    + ACS    +  G  I A
Sbjct: 112 LVLWNMMMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRA 171

Query: 161 AVIRWGVDEDVF-----VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
            +      + VF     V  +L+D+Y K   +  A K+F +MPERN++SWT ++ GYA  
Sbjct: 172 YM------DGVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVA 225

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PER------- 262
           G L +A+ +F    ++  + W A+I   V+ G    A  LF +M      P++       
Sbjct: 226 GQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLL 285

Query: 263 --------------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                                     + V  T +I+ Y+K G +  +  +F     RD  
Sbjct: 286 TCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAA 345

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           AW+A+I G A NGQ  +A+++F +M     +PD    + +++AC   G +D        +
Sbjct: 346 AWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAM 405

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVS-YCSMIKGLSIHGHGR 414
              +    R    + LV++    G +  A +L   MP N D +  + +++     +G+  
Sbjct: 406 KEIYQIEPRIEHYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVE 465

Query: 415 QAVSLFDRMLSE 426
            +  L  R+  E
Sbjct: 466 MSERLTKRIAKE 477



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 138/300 (46%), Gaps = 30/300 (10%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +++A  L  +  +F +    +  LW  ++    Q+  F E  T+F  +  +   PDK+T 
Sbjct: 222 YAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTV 281

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             ++  C+++ ++ +G  IH       +  D  +GT+LI++Y K   +  + ++F  M  
Sbjct: 282 VTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQG 341

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI----------GGLVKIG-- 247
           R+  +WTA+I G A+ G   +A  +F+ M +RS    + +           GGLV  G  
Sbjct: 342 RDAAAWTAIICGLATNGQASKALELFEEM-QRSKTKPDGITFIGVLNACCHGGLVDEGRR 400

Query: 248 DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVA-WSALISGY 305
             ++ ++++   P   +  Y+ +++     G +  A  L    P + D +  + AL++  
Sbjct: 401 HFQAMKEIYQIEPR--IEHYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTAC 458

Query: 306 AQNGQPDEA----VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
              G  + +     +I  + CS+N  PD  +L+S + A +       S W +S   RS M
Sbjct: 459 KAYGNVEMSERLTKRIAKEDCSQN--PDVNVLMSNVYATA-------SRWEESIRVRSKM 509



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 15/229 (6%)

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A + + A P RD    + LI   A+ G     + ++ D+ ++ +  D +    ++ A   
Sbjct: 2   ATACYHAMPLRDC---NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRA--- 55

Query: 343 VGNLDLS---NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           +G + LS     V +   ++      A+  ++L++M    G +D A ++F+ MP R +V 
Sbjct: 56  IGVMKLSVEGRKVHAAAVKTGFRWD-AYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVL 114

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           +  M++     G    AV+L + M   G TPD V     +TACS  G +  G R    M 
Sbjct: 115 WNMMMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMD 174

Query: 460 NVYAI-VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            V+   +P       ++D+  + G+L+ A ++   MP E +  +W  L+
Sbjct: 175 GVFGFSLPVAN---ALLDMYTKNGYLEEAVKMFQQMP-ERNIISWTILV 219


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 274/493 (55%), Gaps = 40/493 (8%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  +  + A+F R+   N   WNT+L+ Y+ + R  +  T+F  +     V D  ++
Sbjct: 108 YARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGM----PVRDAGSW 163

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
            +++                AA++R G                    I  ARK+FD MPE
Sbjct: 164 NILL----------------AALVRSG-------------------NIDKARKLFDRMPE 188

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           RNV++WT M+ G A  G + EA+ +FD MPER+ VSWNA+I G  +   +  A  LF +M
Sbjct: 189 RNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKM 248

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P R++ S+  MI G+ +  ++  A+ LF+  P R+VV W+ +++GY Q+ Q + A+++F+
Sbjct: 249 PTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFN 308

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M    ++P++   +  + ACS +  L     V   + ++        + + L+++ AKC
Sbjct: 309 GMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFD-TFIESTLMNLYAKC 367

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A ++F     +DV+S+  MI   + HG G +A+ L+++M   G  P++V +  +L
Sbjct: 368 GEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLL 427

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +ACSH GLV++G R FE M    +I    EHY C++DL  R G L  A  L++ + VEP 
Sbjct: 428 SACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPS 487

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           ++ W ALLG C  + +  +G+L A  L E EP NAG+Y LL NIYA+A +W +   +RS+
Sbjct: 488 STVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSE 547

Query: 560 MKERGLRKIPGCS 572
           M +RGL+K PGCS
Sbjct: 548 MNDRGLKKQPGCS 560



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 199/406 (49%), Gaps = 92/406 (22%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVF 225
           D DV   T+L+  Y  +  +  AR +FD  P+  RNVV+WTA++ GYA  G + EA+ +F
Sbjct: 63  DRDVVSWTALVAAYACQGMLHDARALFDR-PDARRNVVTWTALLSGYARAGRVDEAEALF 121

Query: 226 DLMPERSNVSWNA-------------------------------LIGGLVKIGDLRSARQ 254
             MPER+ VSWN                                L+  LV+ G++  AR+
Sbjct: 122 GRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARK 181

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           LFD MPERNV+++TTM+ G A+ G +  AR+LF+  P+R+VV+W+A+ISGYA+N   DEA
Sbjct: 182 LFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEA 241

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
             +F  M ++++     ++   +                                     
Sbjct: 242 HDLFMKMPTRDIASWNIMITGFI------------------------------------- 264

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
              +  N++RA ELF+ MP R+VV++ +M+ G         A+ LF+ ML +G+ P++V 
Sbjct: 265 ---QNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVT 321

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIV-PSPEHY-----ACMVDLLGRTGHLKSAY 488
           F   + ACS++  + +G       Q V+ ++  +P  +     + +++L  + G +  A 
Sbjct: 322 FLGAVDACSNLAGLSEG-------QQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILAR 374

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           ++ N +  E    +W  ++ A   Y+   +G L A  L+E   +N 
Sbjct: 375 KVFN-LSKEKDVISWNGMIAA---YAHHGVG-LEAIHLYEKMQENG 415



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 161/315 (51%), Gaps = 24/315 (7%)

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTM 270
           A+ G + +A+ +FD  P+R  VSW AL+      G L  AR LFD  P+  RNVV++T +
Sbjct: 46  AAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR-PDARRNVVTWTAL 104

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           + GYA+ G +  A +LF   P+R+VV+W+ ++  Y  +G+  +A  +F+ M  ++     
Sbjct: 105 LSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWN 164

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
            +L +L+ +    GN+D +  +   +   ++ ++   ++A +    A+ G+++ A  LF+
Sbjct: 165 ILLAALVRS----GNIDKARKLFDRMPERNV-MAWTTMVAGI----ARSGSVNEARALFD 215

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            MP R+VVS+ +MI G + +    +A  LF +M     T D  ++ I++T       +E 
Sbjct: 216 GMPERNVVSWNAMISGYARNHMIDEAHDLFMKM----PTRDIASWNIMITGFIQNKNLER 271

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALL 507
               F+ M     +      +  M++   ++   ++A +L N M ++   P+   +   +
Sbjct: 272 AQELFDKMPRRNVVT-----WTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAV 326

Query: 508 GACKLYSDIELGELV 522
            AC   + +  G+ V
Sbjct: 327 DACSNLAGLSEGQQV 341



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 139/272 (51%), Gaps = 43/272 (15%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RD 294
           N  +  L   G +  AR+LFD  P+R+VVS+T ++  YA  G +  AR+LF+  PD  R+
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD-RPDARRN 97

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS------ACSQVGNL-- 346
           VV W+AL+SGYA+ G+ DEA  +F  M  +NV     +L +  S      AC+    +  
Sbjct: 98  VVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPV 157

Query: 347 -DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            D  +W                ++AALV    + GN+D+A +LF+ MP R+V+++ +M+ 
Sbjct: 158 RDAGSW--------------NILLAALV----RSGNIDKARKLFDRMPERNVMAWTTMVA 199

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G++  G   +A +LFD M    +    V++  +++  +   ++++    F  M       
Sbjct: 200 GIARSGSVNEARALFDGMPERNV----VSWNAMISGYARNHMIDEAHDLFMKM------- 248

Query: 466 PSPE--HYACMVDLLGRTGHLKSAYELLNSMP 495
           P+ +   +  M+    +  +L+ A EL + MP
Sbjct: 249 PTRDIASWNIMITGFIQNKNLERAQELFDKMP 280


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 302/582 (51%), Gaps = 76/582 (13%)

Query: 34  PSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           P  L +  +L+K C  +  L     VH+ +  +G++ + +L A  ++  ++     + + 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSE-ALAATALANMYAKCRRPADAR 114

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHV 149
            VF+R+   +   WN L+ GY++N        + VR+  EE   PD  T   V+ AC++ 
Sbjct: 115 RVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANA 174

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++      HA  IR G++E V V T+++D Y K                          
Sbjct: 175 RALAACREAHAFAIRSGLEELVNVATAILDAYCK-------------------------- 208

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER------- 262
                 GD+  A+ VFD MP +++VSWNA+I G  + GD R A  LF+ M E        
Sbjct: 209 -----CGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDV 263

Query: 263 --------------------------------NVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                                           NV     +I  Y+K   +  A  +F+  
Sbjct: 264 SVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL 323

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
             R  V+W+A+I G AQNG  ++AV++F+ M  +NV+PD F LVS++ A + + +   + 
Sbjct: 324 DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR 383

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
           W+  Y  R H+D    +V+ AL+DM AKCG ++ A  LF +   R V+++ +MI G   H
Sbjct: 384 WIHGYSIRLHLD-QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSH 442

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G+ AV LF+ M S G+ P+E  F  VL+ACSH GLV++G  +F +M+  Y + P  EH
Sbjct: 443 GFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEH 502

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y  MVDLLGR G L  A+  +  MP++P  S +GA+LGACKL+ ++EL E  A ++FEL 
Sbjct: 503 YGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           PQ    +VLL+NIYA A  W DV  VR+ M++ GL+K PG S
Sbjct: 563 PQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWS 604


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 184/530 (34%), Positives = 287/530 (54%), Gaps = 19/530 (3%)

Query: 55  QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           Q+H+ I+K G   D    ++LVA ++         +  +  +F  +   +   WN++L G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRF-----GKMPEAAVIFGNLEGKDIVTWNSMLTG 235

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           + QN  + E    F  L   +  PD+ +   +I A   +  +  G  IHA  I+ G D +
Sbjct: 236 FIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSN 295

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMP 229
           + VG +LID+Y K   +S   + FD M  ++++SWT    GYA     ++A  +   L  
Sbjct: 296 ILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM 355

Query: 230 ERSNVSWNALIG-------GLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
           E  +V    +IG       GL  +G ++            + V   T+ID Y + G +  
Sbjct: 356 EGMDVD-ATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDY 414

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  +FE+   +DVV+W+++IS Y  NG  ++A+++FS M    ++PD   LVS++SA   
Sbjct: 415 AVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +  L     +  ++ R    L    +   LVDM A+CG+++ A ++F    NR+++ + +
Sbjct: 475 LSTLKKGKEIHGFIIRKGFIL-EGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTA 533

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI    +HG+G  AV LF RM  E + PD + F  +L ACSH GLV +G  F E M+  Y
Sbjct: 534 MISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEY 593

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            + P PEHY C+VDLLGR   L+ AY+++ SM  EP    W ALLGAC+++S+ E+GE+ 
Sbjct: 594 QLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVA 653

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A +L EL+  N G+YVL+SN++A   RW DV  VR +MK  GL K PGCS
Sbjct: 654 AEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCS 703



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 184/368 (50%), Gaps = 26/368 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVL 150
           +F+++   + F WN ++ GY  N   +    ++ R +R   V  D YTFP+++KAC  V 
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMY-REMRHLGVSFDSYTFPVLLKACGIVE 72

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN-VVSWTAMI 209
            +  G  IH   I++G D  VFV  SL+ LY K  +I+ ARK+FD M  RN VVSW ++I
Sbjct: 73  DLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSII 132

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGG---------LVKIG------DLRSARQ 254
             Y+  G   EA  +F  M +   V+                 +K+G       L+S R 
Sbjct: 133 SAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRV 192

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           L       +V     ++  Y + G M  A  +F     +D+V W+++++G+ QNG   EA
Sbjct: 193 L-------DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEA 245

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           ++ F D+ + +++PD+  ++S++ A  ++G L     + +Y  ++  D S   V   L+D
Sbjct: 246 LEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFD-SNILVGNTLID 304

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M AKC  M      F+ M ++D++S+ +   G + +    QA+ L  ++  EG+  D   
Sbjct: 305 MYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATM 364

Query: 435 FTIVLTAC 442
              +L AC
Sbjct: 365 IGSILLAC 372



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVS 235
           +YGK   +  A  +FD+M ER++ +W AM+ GY S G+ + A  ++  M        + +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDMTSARSLFEAAP 291
           +  L+     + DL    ++     +    S+  +++     YAK  D+  AR LF+   
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 292 DR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
            R DVV+W+++IS Y+ NG   EA+ +FS+M    V  + +   + + AC     + L  
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            + + + +S   L   +V  ALV M  + G M  AA +F  +  +D+V++ SM+ G   +
Sbjct: 181 QIHAAILKSGRVLD-VYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           G   +A+  F  + +  L PD+V+   ++ A   +G + +G
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K G +  A  +F+   +R +  W+A++ GY  NG+   A++++ +M    V  D +  
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             L+ AC  V +L     +     +   D S   V+ +LV + AKC +++ A +LF+ M 
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCD-SFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 394 NR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
            R DVVS+ S+I   S +G   +A+ LF  ML  G+  +   F   L AC     ++ G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 453 RFFEAM 458
           +   A+
Sbjct: 181 QIHAAI 186


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 299/532 (56%), Gaps = 20/532 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+ + + G   D  +++  I+  +  +  +  +  VF  +   +   W  ++  ++Q  
Sbjct: 144 VHALVQRIGFASDLFVMSGLINF-YGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCG 202

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           ++  V      +  E   P+K T   ++ AC  V +V +G  ++A V  +G++ DV +  
Sbjct: 203 QWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRN 262

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV- 234
           +LI +Y K   +S A K F  MP RN  SW  +I G+   G   EA T+F+ M     + 
Sbjct: 263 ALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIP 322

Query: 235 ---SWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLF 287
              +  +++    ++GDL+  R L + + +     +++   ++I+ YAK GDM +A  +F
Sbjct: 323 DVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIF 382

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           E    RD+V+W+A++ GY +  Q   A  +F DM  ++V   E  LVSL+SACSQ+G LD
Sbjct: 383 ENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALD 442

Query: 348 LSNWVDSYLS----RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
               + SY+     R+ M L      +ALVDM AKCG +D AAE+F  M ++  +++ +M
Sbjct: 443 KGREIHSYIKEKSVRTDMWLE-----SALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAM 497

Query: 404 IKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           I GL+  G G++AV+LF+++L      PD +   +VL AC+HVG+V++G  +F  M  + 
Sbjct: 498 IGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTL- 556

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            IVP  EHY C+VDLLGR G L  AY  +  MP++P+   WG+LL AC+++  +ELG+++
Sbjct: 557 GIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKII 616

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
              + +L P + G++VL+SN++A   +W DV  VR  M  R + K PG SS+
Sbjct: 617 GQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSI 668



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/512 (30%), Positives = 259/512 (50%), Gaps = 30/512 (5%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS-----YS 89
           +C  S L  +  C  + +L ++H  +++  L  D  +    ++L   LA+P+S     Y+
Sbjct: 16  ACRDSLLAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTL---LASPVSRHDMPYA 72

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             VF+R+  P   +WN +++GY+     ++   +F  + R    PD YT   V ++ +  
Sbjct: 73  RKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAF 132

Query: 150 LSVR---EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
            S +    G A+HA V R G   D+FV + LI+ YG  K +  ARKVF+EM ER+VVSWT
Sbjct: 133 ASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWT 192

Query: 207 AMIVGYASVGDLVEA-KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF------DEM 259
            MI  +A  G      +++ ++  E +  +   +I  L   G +R+  +        DE 
Sbjct: 193 LMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEY 252

Query: 260 P-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             E +V     +I  Y K G M+ A   F+  P R+  +W+ LI G+ QNG+  EA+ +F
Sbjct: 253 GIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMF 312

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS--RSHMDLSRAHVIAALVDMN 376
            +M S  V PD   LVS++S  +Q+G+L    ++ +Y+     H D+   +   +L++M 
Sbjct: 313 EEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQN---SLINMY 369

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCG+M  A  +FE M  RD+VS+ +M+ G       R A +LFD M    +   E+A  
Sbjct: 370 AKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALV 429

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            +L+ACS +G ++ G R   +     ++       + +VD+  + G + +A E+ + M  
Sbjct: 430 SLLSACSQLGALDKG-REIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMR- 487

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFE 528
                AW A++G   L S  +  E VA  LFE
Sbjct: 488 HKQTLAWNAMIGG--LASQGQGKEAVA--LFE 515


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 182/543 (33%), Positives = 301/543 (55%), Gaps = 15/543 (2%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           T++K C    +L Q   +HS IIK G E +  +    + +       +  +  VF  I  
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID-AIGVFKTIKK 377

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+  +W+ L+    Q  +  E   +F  +   + +P++YT   ++ A ++  +++ G +I
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA V ++G + DV V  +L+ +Y K   +    K+++ M +R+++SW A + G    G  
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMY 497

Query: 219 VEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLF-----DEMPERNVVSYTT 269
               T+F  M E   +    ++ +++G    + D+   RQ+      +++ + N V  T 
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TA 556

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID YAK   +  A   F     RD+  W+ +I+ YAQ  Q ++A+  F  M  + V+P+
Sbjct: 557 LIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPN 616

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           EF L   +S CS + +L+    + S + +S   +S   V +ALVDM AKCG M+ A  LF
Sbjct: 617 EFTLAGCLSGCSSLASLEGGQQLHSMVFKSG-HVSDMFVGSALVDMYAKCGCMEEAEALF 675

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E +  RD +++ ++I G + +G G +A++ F  ML EG++PD V FT +L+ACSH GLVE
Sbjct: 676 EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE 735

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G   F +M   + I P+ +H ACMVD+LGR G      + +  M +  +A  W  +LGA
Sbjct: 736 EGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
            K+++++ LGE  AN+LFEL+P+   SY+LLSNI+AT  RW DV  VRS M  +G++K P
Sbjct: 796 SKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEP 855

Query: 570 GCS 572
           GCS
Sbjct: 856 GCS 858



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 235/491 (47%), Gaps = 27/491 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  I+K  +  D  L    +++ ++     +Y+  V  ++ + +   W  L++G     
Sbjct: 134 IHGLIVKDVINPDSHLWVSLVNV-YAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEG 192

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +   +F  +  E  +P+++T    +KACS  +++  G  +HA   + G+  D+FVG+
Sbjct: 193 FANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGS 252

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L+DLY K  EI  A K+F  MPE+N V+W  ++ GYA  GD+     +F  M E     
Sbjct: 253 ALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKC 312

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSARSLF 287
           +  +   ++ G     +L+  + +   +     E N      ++D Y+K G    A  +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +     D+V WSALI+   Q GQ +E++K+F  M   +  P+++ + SL+SA +  GNL 
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               + + + +   +   A V  ALV M  K G +    +L+E+M +RD++S+ + + GL
Sbjct: 433 YGQSIHACVWKYGFETDVA-VSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
              G   + +++F  ML EG  P+   F  +L +CS +  V  G       + V+A +  
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-------RQVHAHIIK 544

Query: 468 PE----HYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
            +    ++ C  ++D+  +  +L+ A    N + V      W  ++     Y+    GE 
Sbjct: 545 NQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD-LFTWTVIITN---YAQTNQGEK 600

Query: 522 VANRLFELEPQ 532
             N   +++ +
Sbjct: 601 ALNYFRQMQQE 611


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 292/548 (53%), Gaps = 73/548 (13%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + A+   +  P+   WN++L G ++N   +      V+   E    D  ++ L+++    
Sbjct: 155 AVALLREMPAPDIISWNSVLVGLTRNGEMVRA----VKFFDEMPARDMVSWNLMLEG--- 207

Query: 149 VLSVREGTAIHAAVIRWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
              VR G    AA +  GV   +V    +L++ Y +   I  AR++FD +P+RNV +W  
Sbjct: 208 --YVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNV 265

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP------- 260
           M+ GY  +  + EA  +F  MP+++++SW  +I  LV+ G L+ A+ L D+MP       
Sbjct: 266 MLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAK 325

Query: 261 ------------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                                    R+ V + TMI GY   G +  A  LF+  P++D+V
Sbjct: 326 TALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMV 385

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKN-----------VQP-------DEFILVS--- 335
           +W+ +I+GYA +GQ  +AV IF  M  +N           VQ          F+L+    
Sbjct: 386 SWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDA 445

Query: 336 ----------LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
                      +SAC+ +  L +     S L+RS   +  +    AL+   AKCG +  A
Sbjct: 446 KRADWSTYACCLSACADLAALHVGRQFHSLLARSGY-IGDSFAGNALISAYAKCGRILEA 504

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
            ++F+ MP  D+VS+ ++I G + +GHG +A+S+F  M    + PDEV F  VL+ACSH 
Sbjct: 505 RQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHA 564

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GL+++G+ FF +M   YA+ P  EHYACMVDLLGR+G L  A+E++  M V+P+A  WGA
Sbjct: 565 GLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGA 624

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           +LGAC+++ + EL +L A +L+ELEP    +YVLLSNI A A +W +   +R  +KERG+
Sbjct: 625 MLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKERGV 684

Query: 566 RKIPGCSS 573
            K PG + 
Sbjct: 685 HKTPGLAG 692



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 212/473 (44%), Gaps = 70/473 (14%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ I   NT  WN ++   S + R  +   +F      +A+P +  F   +    +  +
Sbjct: 64  LFDEIPRRNTVSWNAMIAACSDHGRVADARDLF------DAMPARDGFSWTLMVSCYARA 117

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              G A   A+ R   D+      ++I  Y K      A  +  EMP  +++SW +++VG
Sbjct: 118 GELGLA-RDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVG 176

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
               G++V A   FD MP R  VSWN ++ G V+ GD+ SA  LF  +P  NVVS+ T++
Sbjct: 177 LTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLL 236

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           +GY + G +  AR LF+  PDR+V AW+ ++SGY +    +EA K+F++M  KN      
Sbjct: 237 NGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKN----SI 292

Query: 332 ILVSLMSACSQVGNL----DL------------SNWVDSYLSRSHMDLSR---------- 365
              +++SA  + G L    DL            +  +  YL    +D +R          
Sbjct: 293 SWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRD 352

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM-- 423
           A     ++     CG +D A  LF+ MPN+D+VS+ +MI G +  G  R+AV +F +M  
Sbjct: 353 AVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQ 412

Query: 424 -------------LSEGL----------------TPDEVAFTIVLTACSHVGLVEDGWRF 454
                        +  GL                  D   +   L+AC+ +  +  G +F
Sbjct: 413 RNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQF 472

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
              +     I  S    A ++    + G +  A ++ + MP  P   +W AL+
Sbjct: 473 HSLLARSGYIGDSFAGNA-LISAYAKCGRILEARQVFDEMPA-PDIVSWNALI 523



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 172/322 (53%), Gaps = 23/322 (7%)

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
           +  +++ AR++FD MP RN VS+ AM+   A  G + +A+ +FD +P R+ VSWNA+I  
Sbjct: 23  RSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAA 82

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSAL 301
               G +  AR LFD MP R+  S+T M+  YA+ G++  AR   +  P D+    ++A+
Sbjct: 83  CSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAM 142

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ISGYA++G+ D+AV +  +M + ++     +LV L      V  +    + D   +R  +
Sbjct: 143 ISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAV---KFFDEMPARDMV 199

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
             +       +++   + G++D AA LF  +P+ +VVS+ +++ G    G   +A  LFD
Sbjct: 200 SWN------LMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFD 253

Query: 422 RMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           R+      PD    A+ ++L+    +  +E+ ++ F  M +  +I      +  M+  L 
Sbjct: 254 RI------PDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSI-----SWTTMISALV 302

Query: 480 RTGHLKSAYELLNSMPVEPHAS 501
           R G L+ A +LL+ MP +  A+
Sbjct: 303 RGGKLQEAKDLLDKMPFDSFAA 324



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 150/301 (49%), Gaps = 27/301 (8%)

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
           L + G L +AR+LFD MP RN VSY  M+   A+ G +  AR LF+  P R+ V+W+A+I
Sbjct: 21  LARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMI 80

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           +  + +G+  +A  +F  M ++    D F    ++S  ++ G L L+      L R   D
Sbjct: 81  AACSDHGRVADARDLFDAMPAR----DGFSWTLMVSCYARAGELGLAR---DALDRMPGD 133

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
              A    A++   AK G  D A  L   MP  D++S+ S++ GL+ +G   +AV  FD 
Sbjct: 134 KCTA-CYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDE 192

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--R 480
           M +     D V++ ++L      G V       ++   ++A VPSP   + +  L G  R
Sbjct: 193 MPAR----DMVSWNLMLEGYVRAGDV-------DSAAGLFAGVPSPNVVSWVTLLNGYCR 241

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF-ELEPQNAGSYVL 539
            G +  A EL + +P + + +AW  +L      S +E     A +LF E+  +N+ S+  
Sbjct: 242 AGRIGEARELFDRIP-DRNVAAWNVMLSGYLRLSHME----EAYKLFTEMPDKNSISWTT 296

Query: 540 L 540
           +
Sbjct: 297 M 297



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 141/344 (40%), Gaps = 60/344 (17%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYS-------------------------------QN 114
           L  +  +F ++ N +   WNT++ GY+                               QN
Sbjct: 369 LDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQN 428

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
              +E    FV + R+    D  T+   + AC+ + ++  G   H+ + R G   D F G
Sbjct: 429 GLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAG 488

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            +LI  Y K   I  AR+VFDEMP  ++VSW A+I GYAS G   EA +VF  M +    
Sbjct: 489 NALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMED---- 544

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID-GYAKVGDMTSARSLFEAAPDR 293
                        D+R     F  +   +  S+  +ID G+     MT   +L   A   
Sbjct: 545 ------------NDVRPDEVTF--VGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEH- 589

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
               ++ ++    ++G+  EA +I   M    VQP+  +  +++ AC    N +L+    
Sbjct: 590 ----YACMVDLLGRSGRLSEAFEIIQGM---QVQPNAGVWGAMLGACRVHKNHELAQLAA 642

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
             L       +  +V+  L ++ A+ G  D A  +   +  R V
Sbjct: 643 EKLYELEPHKTSNYVL--LSNITAEAGKWDEAQNMRVFIKERGV 684


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 308/540 (57%), Gaps = 25/540 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH++ ++KG E +  ++   +++   L   L+ S  +       +   WNT+L    QN
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFV 173
            + +E       ++ E   PD++T   V+ ACSH+  +R G  +HA  ++ G +DE+ FV
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G++L+D+Y   K++   R+VFD M +R +  W AMI GY+      EA  +F  M E + 
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 400

Query: 234 VSWNA-----LIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSAR 284
           +  N+     ++   V+ G       +   + +R +        T++D Y+++G +  A 
Sbjct: 401 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 460

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM------CSK-----NVQPDEFIL 333
            +F    DRD+V W+ +I+GY  +   ++A+ +   M       SK     +++P+   L
Sbjct: 461 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           ++++ +C+ +  L     + +Y  ++++    A V +ALVDM AKCG +  + ++F+ +P
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++V+++  +I    +HG+G++A+ L   M+ +G+ P+EV F  V  ACSH G+V++G R
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE-PHASAWGALLGACKL 512
            F  M+  Y + PS +HYAC+VDLLGR G +K AY+L+N MP +   A AW +LLGA ++
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++++E+GE+ A  L +LEP  A  YVLL+NIY++A  W     VR  MKE+G+RK PGCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 177/385 (45%), Gaps = 21/385 (5%)

Query: 83  ATPLSYSTAVFNRIVN-PNTFL--------WNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
           ATP S +  V + +   P+ F+        W  LL+   +++   E    +V +I     
Sbjct: 35  ATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIK 94

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLYGKRKEISCARK 192
           PD Y FP ++KA + +  +  G  IHA V ++G   D V V  +L++LY K  +     K
Sbjct: 95  PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPERSNVSWNALIGGLVKIGDLRS 251
           VFD + ERN VSW ++I    S      A   F  ++ E    S   L+  +    +L  
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 214

Query: 252 ARQLFD---------EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
              L              E N     T++  Y K+G + S++ L  +   RD+V W+ ++
Sbjct: 215 PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           S   QN Q  EA++   +M  + V+PDEF + S++ ACS +  L     + +Y  ++   
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
              + V +ALVDM   C  +     +F+ M +R +  + +MI G S + H ++A+ LF  
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394

Query: 423 M-LSEGLTPDEVAFTIVLTACSHVG 446
           M  S GL  +      V+ AC   G
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSG 419



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 234/515 (45%), Gaps = 38/515 (7%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P N+  P+ LL A+  ++  +L     Q+H+H+ K G   D   VA+ +   +       
Sbjct: 95  PDNYAFPA-LLKAVADLQDMELGK---QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 150

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
               VF+RI   N   WN+L+       ++      F  ++ E   P  +T   V+ ACS
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210

Query: 148 HV---LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ++     +  G  +HA  +R G + + F+  +L+ +YGK  +++ ++ +      R++V+
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 269

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLF-- 256
           W  ++        L+EA      M      P+   +S  +++     +  LR+ ++L   
Sbjct: 270 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS--SVLPACSHLEMLRTGKELHAY 327

Query: 257 ---DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
              +   + N    + ++D Y     + S R +F+   DR +  W+A+I+GY+QN    E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387

Query: 314 AVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           A+ +F  M  S  +  +   +  ++ AC + G       +  ++ +  +D  R  V   L
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR-FVQNTL 446

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM------LSE 426
           +DM ++ G +D A  +F  M +RD+V++ +MI G     H   A+ L  +M      +S+
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 427 G-----LTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMVDLLGR 480
           G     L P+ +    +L +C+ +  +  G      A++N  A   +    + +VD+  +
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAK 564

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            G L+ + ++ + +P + +   W  ++ A  ++ +
Sbjct: 565 CGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 73/152 (48%)

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W  L+    ++    EAV  + DM    ++PD +   +L+ A + + +++L   + +++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +    +    V   LV++  KCG+     ++F+ +  R+ VS+ S+I  L        A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             F  ML E + P       V+TACS++ + E
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 272/479 (56%), Gaps = 43/479 (8%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           PN+FL NT+L+ Y+   R  E   +++ + R     + +T+P V+K C+  L    G  +
Sbjct: 95  PNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVV 154

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  V+R G   D+FV  +L+D+Y K                                G++
Sbjct: 155 HGQVVRTGFGSDLFVEAALVDMYAK-------------------------------CGEI 183

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGY 274
            +A  VFD M  R  V W A+I    +      A  LF +M E       ++  ++    
Sbjct: 184 GDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAV 243

Query: 275 AKVGD----MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
            ++GD    ++ AR +F+   +R+ ++W++++SGY QNG+P +A+ +F+ M +    P+ 
Sbjct: 244 GQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNP 303

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              + ++SACS +G+  L   + +++  S MD+    +  A++DM  KCG++D A E+F 
Sbjct: 304 VTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTT-LRNAIMDMYMKCGDLDTAVEMFN 362

Query: 391 T--MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
              +  RDV S+  +I G  +HGHG++A+ LF RM  EG+ P+++ FT +L+ACSH GL+
Sbjct: 363 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 422

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           ++G + F  M  + ++ P  +HYACMVD+LGR G L  A+ L+  +P  P    WGALL 
Sbjct: 423 DEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLL 481

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           AC+++ + ELGE+ AN LF+LEP++ G YVL+SNIYA +++W +V +VR  MK RGL+K
Sbjct: 482 ACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK 540


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 308/540 (57%), Gaps = 25/540 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH++ ++KG E +  ++   +++   L   L+ S  +       +   WNT+L    QN
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFV 173
            + +E       ++ E   PD++T   V+ ACSH+  +R G  +HA  ++ G +DE+ FV
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G++L+D+Y   K++   R+VFD M +R +  W AMI GY+      EA  +F  M E + 
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 400

Query: 234 VSWNA-----LIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSAR 284
           +  N+     ++   V+ G       +   + +R +        T++D Y+++G +  A 
Sbjct: 401 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 460

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM------CSK-----NVQPDEFIL 333
            +F    DRD+V W+ +I+GY  +   ++A+ +   M       SK     +++P+   L
Sbjct: 461 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           ++++ +C+ +  L     + +Y  ++++    A V +ALVDM AKCG +  + ++F+ +P
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++V+++  +I    +HG+G++A+ L   M+ +G+ P+EV F  V  ACSH G+V++G R
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE-PHASAWGALLGACKL 512
            F  M+  Y + PS +HYAC+VDLLGR G +K AY+L+N MP +   A AW +LLGA ++
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++++E+GE+ A  L +LEP  A  YVLL+NIY++A  W     VR  MKE+G+RK PGCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 177/385 (45%), Gaps = 21/385 (5%)

Query: 83  ATPLSYSTAVFNRIVN-PNTFL--------WNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
           ATP S +  V + +   P+ F+        W  LL+   +++   E    +V +I     
Sbjct: 35  ATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIK 94

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLYGKRKEISCARK 192
           PD Y FP ++KA + +  +  G  IHA V ++G   D V V  +L++LY K  +     K
Sbjct: 95  PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPERSNVSWNALIGGLVKIGDLRS 251
           VFD + ERN VSW ++I    S      A   F  ++ E    S   L+  +    +L  
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 214

Query: 252 ARQLFD---------EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
              L              E N     T++  Y K+G + S++ L  +   RD+V W+ ++
Sbjct: 215 PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           S   QN Q  EA++   +M  + V+PDEF + S++ ACS +  L     + +Y  ++   
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
              + V +ALVDM   C  +     +F+ M +R +  + +MI G S + H ++A+ LF  
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394

Query: 423 M-LSEGLTPDEVAFTIVLTACSHVG 446
           M  S GL  +      V+ AC   G
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSG 419



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 234/515 (45%), Gaps = 38/515 (7%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P N+  P+ LL A+  ++  +L     Q+H+H+ K G   D   VA+ +   +       
Sbjct: 95  PDNYAFPA-LLKAVADLQDMELGK---QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 150

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
               VF+RI   N   WN+L+       ++      F  ++ E   P  +T   V+ ACS
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210

Query: 148 HV---LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ++     +  G  +HA  +R G + + F+  +L+ +YGK  +++ ++ +      R++V+
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 269

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLF-- 256
           W  ++        L+EA      M      P+   +S  +++     +  LR+ ++L   
Sbjct: 270 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS--SVLPACSHLEMLRTGKELHAY 327

Query: 257 ---DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
              +   + N    + ++D Y     + S R +F+   DR +  W+A+I+GY+QN    E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387

Query: 314 AVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           A+ +F  M  S  +  +   +  ++ AC + G       +  ++ +  +D  R  V   L
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR-FVQNTL 446

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM------LSE 426
           +DM ++ G +D A  +F  M +RD+V++ +MI G     H   A+ L  +M      +S+
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 427 G-----LTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMVDLLGR 480
           G     L P+ +    +L +C+ +  +  G      A++N  A   +    + +VD+  +
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAK 564

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            G L+ + ++ + +P + +   W  ++ A  ++ +
Sbjct: 565 CGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 73/152 (48%)

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W  L+    ++    EAV  + DM    ++PD +   +L+ A + + +++L   + +++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +    +    V   LV++  KCG+     ++F+ +  R+ VS+ S+I  L        A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             F  ML E + P       V+TACS++ + E
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216


>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 588

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 304/571 (53%), Gaps = 73/571 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L +++  K + HL Q H+ I+ +GL  +  L+   +S   S+++P   +  +        
Sbjct: 6   LEILRSLKFRHHLWQTHAQILVRGLAANPRLLPALVSAAFSVSSPSQAAAVLRAASAAAT 65

Query: 101 TFLWNTLLKGYSQ-NSRFIE-VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           T   NTL++  ++   R  E   T +  +   E  P+ +TF  +++AC     +     I
Sbjct: 66  TVAHNTLIERLTKLRGRGPEDALTAYTAMRAVEVPPNGFTFTFLLRACEFSRILPLCRRI 125

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKE---ISCARKVFDEM------------------ 197
           H  +++ G   DV V  +L+D+Y K      +  AR+VFDEM                  
Sbjct: 126 HGQILKCGFGRDVVVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSS 185

Query: 198 -------------PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV 244
                        PERNVVSW  ++  +A VGD+  A+ VFD MP R+ +SWN +I G  
Sbjct: 186 GDVKGAMELFEVMPERNVVSWNTVVASFARVGDMASAQAVFDRMPTRNAISWNLMISGYA 245

Query: 245 KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
             GD+ +AR +F +  +++VVS+T MI  YAK+G++  A+ LF+  P +++V+W+A+I+G
Sbjct: 246 AGGDVEAARSIFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITG 305

Query: 305 YAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           Y  N + DEA++ F   M     +PDE  LVS++SAC+Q+G+ +  +WV S++ +++ DL
Sbjct: 306 YNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDL 365

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           + A +  AL+DM AKCG++ RA  +F  M +R V+++ +MI GL  +G  R+A+ +++ M
Sbjct: 366 TVA-LGNALIDMFAKCGDVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDM 424

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
             EG+  D+  F  VL ACSH G + +GW  F  M  ++ I P  EHY C+VDLLGR   
Sbjct: 425 CREGVGLDDTVFIAVLAACSHGGFLHEGWSIFRQMVELHGIKPRMEHYGCIVDLLGRA-- 482

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
                                            EL E V+ ++ E+EP ++   VL+SN 
Sbjct: 483 ---------------------------------ELIEYVSKKIVEIEPFSSSYQVLVSNC 509

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            A  +RW  V   R+ M++ G+ K+PG SS+
Sbjct: 510 GALKERWDCVTDARTIMRDFGMEKVPGSSSI 540


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 182/583 (31%), Positives = 307/583 (52%), Gaps = 68/583 (11%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN---PNTFLWNTLLKGYSQ 113
           H  I   G E +  +    +++ +S    L  ++ +F+ I      +   WN+++  + +
Sbjct: 140 HGLICCNGFESNVFICNALVAM-YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK 198

Query: 114 NSRF---IEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +S     +++F+    ++ E+      D  +   ++ AC  + +V +   +H   IR G 
Sbjct: 199 SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGT 258

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             DVFVG +LID Y K   +  A KVF+ M  ++VVSW AM+ GY+  G+   A  +F  
Sbjct: 259 FLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKN 318

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQLFDEM------------------------ 259
           M + +     V+W A+I G  + G    A  +F +M                        
Sbjct: 319 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 378

Query: 260 -------------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP--D 292
                                     + +++ Y  +ID Y+K     +ARS+F+  P  +
Sbjct: 379 FSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 438

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSN 350
           R+VV W+ +I G+AQ G  ++A+K+F +M S+   V P+ + +  ++ AC+ +  + +  
Sbjct: 439 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 498

Query: 351 WVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
            + +Y+ R H   S A+ +A  L++M +KCG++D A  +F++M  +  +S+ SM+ G  +
Sbjct: 499 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 558

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G +A+ +FD+M   G  PD++ F +VL ACSH G+V+ G  +F++M   Y + P  E
Sbjct: 559 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 618

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYA  +DLL R G L  A++ +  MP+EP A  W ALL AC+++S++EL E   N+L E+
Sbjct: 619 HYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 678

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +N GSY L+SNIYATA RW DV  +R  MK+ G++K PGCS
Sbjct: 679 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 721



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 224/493 (45%), Gaps = 81/493 (16%)

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
           Y+  V  R+       WN L++ + +  R      +  R++R     D +T P V+KAC 
Sbjct: 69  YALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACG 128

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER---NVVS 204
            + S R G+A H  +   G + +VF+  +L+ +Y +   +  A  +FDE+ +R   +V+S
Sbjct: 129 ELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVIS 188

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMP---------ERSNV--------------------- 234
           W +++  +    +   A  +F  M          ERS++                     
Sbjct: 189 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 248

Query: 235 ---------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                            NALI    K G + +A ++F+ M  ++VVS+  M+ GY++ G+
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308

Query: 280 MTSARSLFEAAPDR----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
             +A  LF+         D+V W+A+I+GY+Q G   EA+ +F  M      P+   ++S
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 368

Query: 336 LMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAH--------VIAALVDMNAKCGNMDRAA 386
           ++SAC+ +G       + +Y L    + L            V  AL+DM +KC +   A 
Sbjct: 369 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 428

Query: 387 ELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEVAFTIVLTAC 442
            +F+ +P   R+VV++  MI G + +G    A+ LF  M+SE  G+ P+    + +L AC
Sbjct: 429 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 488

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHY--------ACMVDLLGRTGHLKSAYELLNSM 494
           +H+  +  G       + ++A V     Y         C++++  + G + +A  + +SM
Sbjct: 489 AHLAAIRIG-------KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM 541

Query: 495 PVEPHASAWGALL 507
             +  A +W +++
Sbjct: 542 S-QKSAISWTSMM 553



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 166/383 (43%), Gaps = 58/383 (15%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSC--LLSALTLIKKCKLQTHLHQVHSHIIKK------- 63
            + CS    N  R    +   P+C  ++S L+        +   ++H++ +K        
Sbjct: 340 QRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 399

Query: 64  --GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIE 119
             G E +  +V + +   +S       + ++F+ I     N   W  ++ G++Q     +
Sbjct: 400 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 459

Query: 120 VFTIFVRLIREE--AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED--VFVGT 175
              +FV +I E     P+ YT   ++ AC+H+ ++R G  IHA V+R    +    FV  
Sbjct: 460 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN 519

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
            LI++Y K  ++  AR VFD M +++ +SWT+M+ GY   G   EA  +FD M +     
Sbjct: 520 CLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRK----- 574

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                 G V   D+     L+         S+  M+D      D  SA   +   P  + 
Sbjct: 575 -----AGFVP-DDITFLVVLY-------ACSHCGMVDQGLSYFDSMSAD--YGLTPRAEH 619

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
            A++  I   A+ G+ D+A K   DM    ++P   + V+L+SAC    N++L+      
Sbjct: 620 YAYA--IDLLARFGRLDKAWKTVKDM---PMEPTAVVWVALLSACRVHSNVELAE----- 669

Query: 356 LSRSHMDLSRAHVIAALVDMNAK 378
                      H +  LV+MNA+
Sbjct: 670 -----------HALNKLVEMNAE 681



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 50/274 (18%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T ++  Y   G    A  + E       V W+ LI  + + G+ D A+ +   M     +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            D F L  ++ AC ++ +    +     +  +  + S   +  ALV M ++CG+++ A+ 
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFE-SNVFICNALVAMYSRCGSLEEASM 173

Query: 388 LFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRM---LSEGLT---PDEVAFTIV 438
           +F+ +  R   DV+S+ S++       +   A+ LF +M   + E  T    D ++   +
Sbjct: 174 IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 233

Query: 439 LTACSHV-----------------------------------GLVEDGWRFFEAMQNVYA 463
           L AC  +                                   GL+E+  + F  M+  + 
Sbjct: 234 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME--FK 291

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
            V S   +  MV    ++G+ K+A+EL  +M  E
Sbjct: 292 DVVS---WNAMVAGYSQSGNFKAAFELFKNMRKE 322


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 154/337 (45%), Positives = 217/337 (64%), Gaps = 1/337 (0%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N +I   VK G L  AR++FDEMP R+VV++T +I  YA+ GDM SA  LF   P +D+V
Sbjct: 148 NTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMV 207

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           AW+++++GY+QN  P +A++ F  M    V  DE  LV  +SAC+Q+G    ++W+    
Sbjct: 208 AWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIA 267

Query: 357 SRSHMDL-SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
             S     S   V +AL+DM +KCGN++ A  +F+ M   +V SY SMI G ++HG  R 
Sbjct: 268 ESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARS 327

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LF  ML  G+ P+ V F  + TACSH G+VE G + F AM+  Y + P+ +HYACM 
Sbjct: 328 AIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMA 387

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR GHL+ A +L+ +MP+EP+   WGALLGA  ++ + ++ E+ +  LFELEP N G
Sbjct: 388 DLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLG 447

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +Y+LLS  YA A +W DV  VR  M+E+ LRK PGCS
Sbjct: 448 NYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCS 484



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 211/438 (48%), Gaps = 49/438 (11%)

Query: 47  CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA-TPL-SYSTAVFNRIVNPNTFLW 104
           C    H  Q+H+HI +  L Q   ++ + +    +L   P+ +Y   +F+++ +PN FL+
Sbjct: 21  CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLY 80

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           + L++ Y++N  F     ++  ++     P  +TF  +    S + +   G+ +H     
Sbjct: 81  SALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQLHLHAFL 137

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
           +G   D++VG ++I +Y K   + CARKVFDEMP R+VV+WT +IV YA  GD+  A  +
Sbjct: 138 FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACEL 197

Query: 225 FDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS------------------ 266
           F  +P +  V+W +++ G  +    + A Q F +M E  VV+                  
Sbjct: 198 FVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVS 257

Query: 267 -----------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
                                   + +ID Y+K G++  A ++F+   + +V ++S++I 
Sbjct: 258 GYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIV 317

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           G+A +G+   A+K+F +M    ++P+    V L +ACS  G ++    +   +   +   
Sbjct: 318 GFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVS 377

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS-LFDR 422
             A   A + D+  + G++++A +L +TMP          + G S H HG   V+ +  R
Sbjct: 378 PTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGAS-HIHGNPDVAEIASR 436

Query: 423 MLSEGLTPDEVAFTIVLT 440
            L E L PD +   ++L+
Sbjct: 437 SLFE-LEPDNLGNYLLLS 453



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 109/245 (44%), Gaps = 44/245 (17%)

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI---LVSLMSACSQ 342
           LF      +   +SALI  YA+NG    ++++++ M + NV P  F    L SL+   S 
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL 127

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAA------------------------LVDMNAK 378
              L L  ++  +++  ++  +  H+                           L+   A+
Sbjct: 128 GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYAR 187

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
            G+MD A ELF  +P +D+V++ SM+ G S +   ++A+  F +M   G+  DE+     
Sbjct: 188 SGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGA 247

Query: 439 LTACSHVGL---------VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           ++AC+ +G+         + +  RF     NV+         + ++D+  + G+++ AY 
Sbjct: 248 ISACAQLGVSGYADWIREIAESSRFGSG-SNVFV-------GSALIDMYSKCGNVEEAYN 299

Query: 490 LLNSM 494
           +   M
Sbjct: 300 VFKGM 304


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 302/582 (51%), Gaps = 76/582 (13%)

Query: 34  PSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           P  L +  +L+K C  +  L     VH+ +  +G++ + +L A  ++  ++     + + 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSE-ALAATALANMYAKCRRPADAR 114

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHV 149
            VF+R+   +   WN L+ GY++N        + VR+  EE   PD  T   V+ AC++ 
Sbjct: 115 RVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANA 174

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++      HA  IR G++E V V T+++D Y K                          
Sbjct: 175 RALAACREAHAFAIRSGLEELVNVATAILDAYCK-------------------------- 208

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER------- 262
                 GD+  A+ VFD MP +++VSWNA+I G  + GD R A  LF+ M E        
Sbjct: 209 -----CGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDV 263

Query: 263 --------------------------------NVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                                           NV     +I  Y+K   +  A  +F+  
Sbjct: 264 SVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL 323

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
             R  V+W+A+I G AQNG  ++AV++F+ M  +NV+PD F LVS++ A + + +   + 
Sbjct: 324 DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR 383

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
           W+  Y  R H+D    +V+ AL+DM AKCG ++ A  LF +   R V+++ +MI G   H
Sbjct: 384 WIHGYSIRLHLD-QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSH 442

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G+ AV LF+ M S G+ P+E  F  VL+ACSH GLV++G  +F +M+  Y + P  EH
Sbjct: 443 GFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEH 502

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y  MVDLLGR G L  A+  +  MP++P  S +GA+LGACKL+ ++EL E  A ++FEL 
Sbjct: 503 YGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELG 562

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           PQ    +VLL+NIYA A  W DV  VR+ M++ GL+K PG S
Sbjct: 563 PQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWS 604


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/583 (31%), Positives = 307/583 (52%), Gaps = 68/583 (11%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN---PNTFLWNTLLKGYSQ 113
           H  I   G E +  +    +++ +S    L  ++ +F+ I      +   WN+++  + +
Sbjct: 33  HGLICCNGFESNVFICNALVAM-YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK 91

Query: 114 NSRF---IEVFTIFVRLIREEAV---PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           +S     +++F+    ++ E+      D  +   ++ AC  + +V +   +H   IR G 
Sbjct: 92  SSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGT 151

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
             DVFVG +LID Y K   +  A KVF+ M  ++VVSW AM+ GY+  G+   A  +F  
Sbjct: 152 FLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKN 211

Query: 228 MPERS----NVSWNALIGGLVKIGDLRSARQLFDEM------------------------ 259
           M + +     V+W A+I G  + G    A  +F +M                        
Sbjct: 212 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 271

Query: 260 -------------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP--D 292
                                     + +++ Y  +ID Y+K     +ARS+F+  P  +
Sbjct: 272 FSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 331

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQVGNLDLSN 350
           R+VV W+ +I G+AQ G  ++A+K+F +M S+   V P+ + +  ++ AC+ +  + +  
Sbjct: 332 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 391

Query: 351 WVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
            + +Y+ R H   S A+ +A  L++M +KCG++D A  +F++M  +  +S+ SM+ G  +
Sbjct: 392 QIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGM 451

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G +A+ +FD+M   G  PD++ F +VL ACSH G+V+ G  +F++M   Y + P  E
Sbjct: 452 HGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAE 511

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYA  +DLL R G L  A++ +  MP+EP A  W ALL AC+++S++EL E   N+L E+
Sbjct: 512 HYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEM 571

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +N GSY L+SNIYATA RW DV  +R  MK+ G++K PGCS
Sbjct: 572 NAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 614



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 209/454 (46%), Gaps = 81/454 (17%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           ++R     D +T P V+KAC  + S R G+A H  +   G + +VF+  +L+ +Y +   
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 187 ISCARKVFDEMPER---NVVSWTAMIVGYASVGDLVEAKTVFDLMP---------ERSNV 234
           +  A  +FDE+ +R   +V+SW +++  +    +   A  +F  M          ERS++
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 235 ------------------------------------SWNALIGGLVKIGDLRSARQLFDE 258
                                                 NALI    K G + +A ++F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR----DVVAWSALISGYAQNGQPDEA 314
           M  ++VVS+  M+ GY++ G+  +A  LF+         D+V W+A+I+GY+Q G   EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAH------ 367
           + +F  M      P+   ++S++SAC+ +G       + +Y L    + L          
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 368 --VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
             V  AL+DM +KC +   A  +F+ +P   R+VV++  MI G + +G    A+ LF  M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 424 LSE--GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY--------AC 473
           +SE  G+ P+    + +L AC+H+  +  G       + ++A V     Y         C
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIG-------KQIHAYVLRHHQYDSSAYFVANC 413

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           ++++  + G + +A  + +SM  +  A +W +++
Sbjct: 414 LINMYSKCGDVDTARHVFDSMS-QKSAISWTSMM 446



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 166/383 (43%), Gaps = 58/383 (15%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSC--LLSALTLIKKCKLQTHLHQVHSHIIKK------- 63
            + CS    N  R    +   P+C  ++S L+        +   ++H++ +K        
Sbjct: 233 QRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 292

Query: 64  --GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIE 119
             G E +  +V + +   +S       + ++F+ I     N   W  ++ G++Q     +
Sbjct: 293 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 352

Query: 120 VFTIFVRLIREE--AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED--VFVGT 175
              +FV +I E     P+ YT   ++ AC+H+ ++R G  IHA V+R    +    FV  
Sbjct: 353 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN 412

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
            LI++Y K  ++  AR VFD M +++ +SWT+M+ GY   G   EA  +FD M +     
Sbjct: 413 CLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRK----- 467

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                 G V   D+     L+         S+  M+D      D  SA   +   P  + 
Sbjct: 468 -----AGFVP-DDITFLVVLY-------ACSHCGMVDQGLSYFDSMSAD--YGLTPRAEH 512

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
            A++  I   A+ G+ D+A K   DM    ++P   + V+L+SAC    N++L+      
Sbjct: 513 YAYA--IDLLARFGRLDKAWKTVKDM---PMEPTAVVWVALLSACRVHSNVELAE----- 562

Query: 356 LSRSHMDLSRAHVIAALVDMNAK 378
                      H +  LV+MNA+
Sbjct: 563 -----------HALNKLVEMNAE 574


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 271/479 (56%), Gaps = 11/479 (2%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN  L+  +  S F E  +++  ++R  + PD ++FP ++K+C+ +     G  +H  V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS--WTAMIVGYASVGDLVEA 221
           + G + + FV T+LI +Y K   ++ ARKVF+E P+ + +S  + A+I GY +   + +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGD----LRSARQLFDEMP----ERNVVSYTTMIDG 273
             +F  M E      +  + GLV +      L   R L  +      +  V    + I  
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K G + + R LF+  P + ++ W+A+ISGY+QNG   + ++++  M S  V PD F L
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           VS++S+C+ +G   + + V   L  S+  +    V  A + M A+CGN+ +A  +F+ MP
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGK-LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            + +VS+ +MI    +HG G   + LFD M+  G+ PD   F +VL+ACSH GL + G  
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F AM+  Y + P PEHY+C+VDLLGR G L  A E + SMPVEP  + WGALLGACK++
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++++ EL   ++ E EP N G YVL+SNIY+ +     +  +R  M+ER  RK PG S
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 16/314 (5%)

Query: 38  LSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++ L L+  C +  +L     +H   +K GL+ + +++  FI++     + +     +F+
Sbjct: 157 VTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGS-VEAGRRLFD 215

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            +       WN ++ GYSQN    +V  ++ ++      PD +T   V+ +C+H+ + + 
Sbjct: 216 EMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 275

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +   V   G   +VFV  + I +Y +   ++ AR VFD MP +++VSWTAMI  Y  
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335

Query: 215 VGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP-----ERNVV 265
            G       +FD M +R        +  ++      G      +LF  M      E    
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPE 395

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
            Y+ ++D   + G +  A    E+ P + D   W AL+     +   D A   F+ +   
Sbjct: 396 HYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI-- 453

Query: 325 NVQPDEFILVSLMS 338
             +P+      LMS
Sbjct: 454 EFEPNNIGYYVLMS 467


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 160/405 (39%), Positives = 247/405 (60%), Gaps = 2/405 (0%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D     +L+  + +   +  AR++FDEMPER++V++ +M+ GYA+ GD+  A+ +FD MP
Sbjct: 151 DTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMP 210

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           ER  V+WN+++ G  + GD+ SA++LFD MP R+VVS+ +M+DGYA+ GD+   R +F+ 
Sbjct: 211 ERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDG 270

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDL 348
            P R  V+W+ +++ YA+     E + +F  M +    +P+E   VS+++AC  +G+L+ 
Sbjct: 271 MPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLER 330

Query: 349 SNWVDSYLSRS-HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
             WV   +  S    L    ++ A++ M AKCG M  A E+F+ M  R V S+ SMI G 
Sbjct: 331 GRWVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGY 390

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            +HG+  +A+ LF  M   G  P+E  F  +L++C+H GLV +GW  F+ M   Y I P 
Sbjct: 391 GLHGYSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPK 450

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EH+ CM+DLLGR G L+ +  L+N++  +   + WGAL+ A +     +LGE +  +L 
Sbjct: 451 AEHFGCMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEFIGTKLI 510

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E++P    SYVLLSNIYAT  RW DV  VR  MKE+ + K  G S
Sbjct: 511 EMKPTEFSSYVLLSNIYATEGRWDDVEKVRKVMKEKVVEKDVGMS 555



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 152/298 (51%), Gaps = 43/298 (14%)

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
           Y S G    A+ +   +P    V+WN L+   +++G L +AR+LFDEMPER++V+Y +M+
Sbjct: 131 YLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLVTYNSML 190

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
            GYA  GD+ +AR LF+  P+RDVV W+++++GYAQ G  + A ++F  M  +       
Sbjct: 191 SGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVR------- 243

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
                          D+ +W                   +++D  A+ G+++    +F+ 
Sbjct: 244 ---------------DVVSW------------------NSMLDGYAQTGDIEMTRMVFDG 270

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSHVGLVED 450
           MP R  VS+  ++   +      + ++LFD M++ G + P+E  F  VLTAC H+G +E 
Sbjct: 271 MPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLER 330

Query: 451 G-WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           G W      ++   ++P       M+ +  + G + +A E+ + M  E   ++W +++
Sbjct: 331 GRWVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLM-TERSVASWNSMI 387



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 51/271 (18%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +   WN++L GY+Q         +F                        V+ 
Sbjct: 205 LFDGMPERDVVTWNSMLAGYAQRGDMESAKRLF-----------------------DVMP 241

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           VR+       V+ W          S++D Y +  +I   R VFD MP R+ VSW  ++  
Sbjct: 242 VRD-------VVSW---------NSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLAL 285

Query: 212 YASVGDLVEAKTVFDLM-----PERSNVSWNALIGGLVKIGDLRSAR---QLFDEMPER- 262
           YA V D  E   +FD M      + +  ++ +++     +GDL   R    L  E  ER 
Sbjct: 286 YAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERL 345

Query: 263 --NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
             +V+  T M+  YAK G M +A+ +F+   +R V +W+++I GY  +G  ++A+++F +
Sbjct: 346 LPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFME 405

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           M     QP+E   + ++S+C+  G L L  W
Sbjct: 406 MEKNGPQPNETTFICILSSCAH-GGLVLEGW 435


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 287/526 (54%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++ S  ++KG+E++  + +  IS        +  +  VF+ + N +   WN+++ GY Q 
Sbjct: 151 EIISSAVEKGMEKNRFVGSSMISFLVKFG-KIGEAQRVFDGMPNKDVVCWNSIIGGYVQA 209

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F   F +F  +      P   T   +I+AC  + +++ G  +H  V+  G+  D+ V 
Sbjct: 210 GCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVL 269

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
           TS +D+Y K  +I  AR VF +MP RN+VSW AMI G    G + E+  +F  +   S  
Sbjct: 270 TSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGG 329

Query: 234 ---VSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
               +  +L+ G  +   L + + L        E N++  T ++D Y+K G +  A  +F
Sbjct: 330 FDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVF 389

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
               DR+V+ W+A++ G AQNG  ++A+++F+ M  + +  +    VSL+ +C+ +G+L 
Sbjct: 390 NRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLK 449

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKG 406
               +  +L R        + + ALVDM AKCG ++ A  +F     ++DVV + SMI G
Sbjct: 450 RGRSIHGHLFRLGFAFDIVN-MTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITG 508

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
             +HGHG QAV ++ +M+ EGL P++  F  +L+ACSH  LVE G   F +M+  + I P
Sbjct: 509 YGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRP 568

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             +HYAC+VDLL R G  + A  L+  MP +P  +   ALL  C+ + +I LG   +++L
Sbjct: 569 IEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKL 628

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             L+  N G Y++LSNIYA A RW  V  +R  M+ RGL+K PG S
Sbjct: 629 LALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYS 674



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 252/519 (48%), Gaps = 15/519 (2%)

Query: 34  PSCLLSALTLIKKC-KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           P+ + + L+L+++  K    +   H+ II   L  D   VA  +   +S    L  +  V
Sbjct: 28  PTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQ-FVATKLVKAYSDLRSLEAARYV 86

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F++   P   L N +L GY Q+ R+ E   +F  +       D  +    +KAC+  L  
Sbjct: 87  FDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDY 146

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
             G  I ++ +  G++++ FVG+S+I    K  +I  A++VFD MP ++VV W ++I GY
Sbjct: 147 EMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGY 206

Query: 213 ASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEM----PERNV 264
              G    A  +F  M     + S ++  +LI     IG+L+  + +   +       ++
Sbjct: 207 VQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDI 266

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +  T+ +D Y+K+GD+ SAR +F   P R++V+W+A+ISG  +NG   E+  +F  +   
Sbjct: 267 LVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRS 326

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           +   D   +VSL+  CSQ  +L     +     RS    S   +  A+VD+ +KCG++ +
Sbjct: 327 SGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFE--SNLILSTAIVDLYSKCGSLKQ 384

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F  M +R+V+++ +M+ GL+ +GH   A+ LF +M  EG+  + V F  ++ +C+H
Sbjct: 385 ATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAH 444

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
           +G ++ G R                +   +VD+  + G +  A  + +   +      W 
Sbjct: 445 LGSLKRG-RSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWN 503

Query: 505 ALLGACKLYSDIELGELVANRLFE--LEPQNAGSYVLLS 541
           +++    ++        + +++ E  L+P       LLS
Sbjct: 504 SMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLS 542


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 291/531 (54%), Gaps = 21/531 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH    K G+ ++ ++    + + +S    L  + A+F+     N   WNT++ GYS+  
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDM-YSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEG 379

Query: 116 RFIEVFTIFVRLIREEAVP-DKYTFPLVIKACS---HVLSVREGTAIHAAVIRWGVDEDV 171
            F  VF +   + REE V  ++ T   V+ ACS    +LS++E   IH    R G  +D 
Sbjct: 380 DFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKE---IHGYAFRHGFLKDE 436

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM--- 228
            V  + +  Y K   + CA +VF  M  + V SW A+I  +A  G   ++  +F +M   
Sbjct: 437 LVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDS 496

Query: 229 ---PERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMT 281
              P+R  +   +L+    ++  LR  +++   M     E +     +++  Y +   M 
Sbjct: 497 GMDPDRFTIG--SLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSML 554

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
             + +F+   ++ +V W+ +I+G++QN  P EA+  F  M S  ++P E  +  ++ ACS
Sbjct: 555 LGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACS 614

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           QV  L L   V S+  ++H+    A V  AL+DM AKCG M+++  +F+ +  +D   + 
Sbjct: 615 QVSALRLGKEVHSFALKAHLS-EDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWN 673

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            +I G  IHGHG +A+ LF+ M ++G  PD   F  VL AC+H GLV +G ++   MQN+
Sbjct: 674 VIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNL 733

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           Y + P  EHYAC+VD+LGR G L  A +L+N MP EP +  W +LL +C+ Y D+E+GE 
Sbjct: 734 YGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEE 793

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           V+ +L ELEP  A +YVLLSN+YA   +W +V  VR +MKE GL K  GCS
Sbjct: 794 VSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCS 844



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 209/426 (49%), Gaps = 19/426 (4%)

Query: 43  LIKKCKLQTHLH---QVHSHI-IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           L++ C    ++H   +VH+ +     L  D  L    I++  +  +P S S  VF+    
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSP-SDSRGVFDAAKE 156

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTA 157
            + FL+N LL GYS+N+ F +  ++F+ L+   +  PD +T P V KAC+ V  V  G A
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEA 216

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA  ++ G   D FVG +LI +YGK   +  A KVF+ M  RN+VSW +++   +  G 
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 218 LVEAKTVFD--LMPERSNV-----SWNALIGGLVKIGDLRSARQL----FDEMPERNVVS 266
             E   VF   L+ E   +     +   +I     +G++R    +    F       V  
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTV 336

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKN 325
             +++D Y+K G +  AR+LF+    ++VV+W+ +I GY++ G      ++  +M   + 
Sbjct: 337 NNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK 396

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V+ +E  +++++ ACS    L     +  Y  R H  L    V  A V   AKC ++D A
Sbjct: 397 VRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFR-HGFLKDELVANAFVAAYAKCSSLDCA 455

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F  M  + V S+ ++I   + +G   +++ LF  M+  G+ PD      +L AC+ +
Sbjct: 456 ERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARL 515

Query: 446 GLVEDG 451
             +  G
Sbjct: 516 KFLRCG 521



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 17/323 (5%)

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           K    ++++AC H  ++  G  +HA V     +  DV + T +I +Y      S +R VF
Sbjct: 92  KEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVF 151

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVF-------DLMPERSNVSWNA-LIGGL--V 244
           D   E+++  + A++ GY+      +A ++F       DL P+   +   A    G+  V
Sbjct: 152 DAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADV 211

Query: 245 KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           ++G+   A  L         V    +I  Y K G + SA  +FE   +R++V+W++++  
Sbjct: 212 ELGEAVHALALKAGGFSDAFVG-NALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYA 270

Query: 305 YAQNGQPDEAVKIFSDMC---SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
            ++NG   E   +F  +     + + PD   +V+++ AC+ VG + +   V     +  +
Sbjct: 271 CSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGI 330

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
                 V  +LVDM +KCG +  A  LF+    ++VVS+ ++I G S  G  R    L  
Sbjct: 331 T-EEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 422 RML-SEGLTPDEVAFTIVLTACS 443
            M   E +  +EV    VL ACS
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACS 412


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 284/493 (57%), Gaps = 13/493 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+++   N   W  ++  ++Q     +   +F+ +     VPD++T+  V+ AC+ +  
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 71

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCARKVFDEMPERNVVSWTAM 208
           +  G  +H+ VIR G+  DV VG SL+D+Y K      +  +RKVF++MPE NV+SWTA+
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 209 IVGYASVGDL-VEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           I  YA  G+   EA  +F  M     R N  S+++++     + D  +  Q++    +  
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 191

Query: 264 VVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           + S      ++I  YA+ G M  AR  F+   ++++V+++A++ GYA+N + +EA  +F+
Sbjct: 192 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 251

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           ++    +    F   SL+S  + +G +     +   L +     S   +  AL+ M ++C
Sbjct: 252 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRC 310

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           GN++ A ++F  M +R+V+S+ SMI G + HG   +A+ +F +ML  G  P+E+ +  VL
Sbjct: 311 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 370

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +ACSHVG++ +G + F +M   + IVP  EHYACMVDLLGR+G L  A E +NSMP+   
Sbjct: 371 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 430

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A  W  LLGAC+++ + ELG   A  + E EP +  +Y+LLSN++A+A +W DV  +R  
Sbjct: 431 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 490

Query: 560 MKERGLRKIPGCS 572
           MKER L K  GCS
Sbjct: 491 MKERNLIKEAGCS 503



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 199/401 (49%), Gaps = 20/401 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY--STAVFNRIVNPNTFLWNTLLKGYS 112
           Q+HS +I+ GL  D  +    + +    A   S   S  VF ++   N   W  ++  Y+
Sbjct: 77  QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYA 136

Query: 113 QNSRF-IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           Q+     E   +F ++I     P+ ++F  V+KAC ++     G  +++  ++ G+    
Sbjct: 137 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN 196

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            VG SLI +Y +   +  ARK FD + E+N+VS+ A++ GYA      EA  +F+ + + 
Sbjct: 197 CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT 256

Query: 232 ----SNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSA 283
               S  ++ +L+ G   IG +    Q+   +     + N      +I  Y++ G++ +A
Sbjct: 257 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 316

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F    DR+V++W+++I+G+A++G    A+++F  M     +P+E   V+++SACS V
Sbjct: 317 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 376

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
           G +       + + + H  + R    A +VD+  + G +  A E   +MP   D + + +
Sbjct: 377 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 436

Query: 403 MIKGLSIHGH---GRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           ++    +HG+   GR A  +   +L +   PD+ A  I+L+
Sbjct: 437 LLGACRVHGNTELGRHAAEM---ILEQ--EPDDPAAYILLS 472



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 174/331 (52%), Gaps = 42/331 (12%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGL 243
           A KVFD+MPERN+V+WT MI  +A +G   +A  +F        +P+R   ++++++   
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLSAC 66

Query: 244 VKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKV---GDMTSARSLFEAAPDRDVV 296
            ++G L   +QL   +       +V    +++D YAK    G +  +R +FE  P+ +V+
Sbjct: 67  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 297 AWSALISGYAQNGQPD-EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +W+A+I+ YAQ+G+ D EA+++F  M S +++P+ F   S++ AC  + +      V SY
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 356 LSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
             +  + ++  + +  +L+ M A+ G M+ A + F+ +  +++VSY +++ G + +    
Sbjct: 187 AVK--LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 244

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----------LVEDGWRFFEAMQNVYA 463
           +A  LF+ +   G+      F  +L+  + +G           L++ G++  + + N   
Sbjct: 245 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA-- 302

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
                     ++ +  R G++++A+++ N M
Sbjct: 303 ----------LISMYSRCGNIEAAFQVFNEM 323


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 274/456 (60%), Gaps = 27/456 (5%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL--YGKRKEISCARKVFDEMPE 199
           +I  CS    +++   IHA ++R G+  D F  + LI          +  A++VFD++P 
Sbjct: 41  LIDQCSETKQLKQ---IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPH 97

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-----NVSWNALIGGLVKIGDLRSAR- 253
            N+ +W  +I  YAS  +  ++  +F  M  +S       ++  LI    ++ +L + + 
Sbjct: 98  PNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA 157

Query: 254 ---QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
               +   +   +V    ++I  YAK G++     +F   P RDVV+W+++I+ + Q G 
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGC 217

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
           P+EA+++F +M ++NV+P+   +V ++SAC++  + +   WV SY+ R+ +  S   +  
Sbjct: 218 PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLT-LSN 276

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI------------KGLSIHGHGRQAVS 418
           A++DM  KCG+++ A  LF+ MP +D+VS+ +M+            +GL++HGHG+ A++
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIA 336

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF +M  + + P+ V FT +L ACSHVGLVE+G  FF  M+ VY ++P  +HYACMVD+L
Sbjct: 337 LFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDIL 396

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR G L+ A EL+  MP+ P AS WGALLGAC ++ ++ L E   ++L ELEP N G+YV
Sbjct: 397 GRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYV 456

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LLSNIYA A +W  V  +R  M++ GL+K PGCSS+
Sbjct: 457 LLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 492



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 197/395 (49%), Gaps = 27/395 (6%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP-LSYSTAVFNRIVNP 99
           L+LI +C     L Q+H+ +++ GL  D    +  I+       P L Y+  VF++I +P
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAI 158
           N + WNTL++ Y+ +S   +   IF+R++ +    PDK+TFP +IKA S +  +  G A 
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  VI+  +  DVF+  SLI  Y K  E+    +VF   P R+VVSW +MI  +   G  
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCP 218

Query: 219 VEAKTVFDLMPERSNVSWNAL-----IGGLVKIGDLRSARQLFDEMPERNVVSYT----- 268
            EA  +F  M E  NV  N +     +    K  D    R +   + ERN +  +     
Sbjct: 219 EEALELFQEM-ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI-ERNRIXESLTLSN 276

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD------------EAVK 316
            M+D Y K G +  A+ LF+  P++D+V+W+ ++ GYA+ G+ D            +A+ 
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIA 336

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +FS M    V+P+     +++ ACS VG ++      + +   +  L      A +VD+ 
Sbjct: 337 LFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDIL 396

Query: 377 AKCGNMDRAAELFETMPNRDVVS-YCSMIKGLSIH 410
            + G ++ A EL E MP     S + +++   +IH
Sbjct: 397 GRAGLLEEAVELIEKMPMAPAASVWGALLGACTIH 431



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 158/354 (44%), Gaps = 44/354 (12%)

Query: 57  HSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           H  +IK  L  D    +SL+ HF + C  L   L Y   VF      +   WN+++  + 
Sbjct: 159 HGMVIKVLLGSDVFILNSLI-HFYAKCGELG--LGYR--VFVNXPRRDVVSWNSMITAFV 213

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           Q     E   +F  +  +   P+  T   V+ AC+       G  +H+ + R  + E + 
Sbjct: 214 QGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLT 273

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           +  +++D+Y K   +  A+++FD+MPE+++VSWT M+VGYA +G+   A+          
Sbjct: 274 LSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ---------- 323

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFE 288
                    GL   G  + A  LF +M E     N V++T ++   + VG +   R+ F 
Sbjct: 324 ---------GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN 374

Query: 289 A-----APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
                      V  ++ ++    + G  +EAV++   M    + P   +  +L+ AC+  
Sbjct: 375 QMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM---PMAPAASVWGALLGACTIH 431

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
            N+ L+    S L         A+V+  L ++ AK G  DR + L + M  RDV
Sbjct: 432 ENVVLAEQACSQLIELEPGNHGAYVL--LSNIYAKAGKWDRVSGLRKLM--RDV 481


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 304/543 (55%), Gaps = 16/543 (2%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +++K C+     +++H   +K G   D  + A  I L +S    +  +  +F+ +   + 
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHL-YSRYKAVGNARILFDEMPVRDM 216

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
             WN ++ GY Q+    E  T+   L       D  T   ++ AC+       G  IH+ 
Sbjct: 217 GSWNAMISGYCQSGNAKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVTIHSY 272

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            I+ G++ ++FV   LIDLY +   +   +KVFD M  R+++SW ++I  Y      + A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332

Query: 222 KTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMID 272
            ++F  M     +   ++  +L   L ++GD+R+ R +      +     ++     ++ 
Sbjct: 333 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEF 331
            YAK+G + SAR++F   P+ DV++W+ +ISGYAQNG   EA+++++ M  +  +  ++ 
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
             VS++ ACSQ G L     +   L ++ + L    V+ +L DM  KCG ++ A  LF  
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD-VFVVTSLADMYGKCGRLEDALSLFYQ 511

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +P  + V + ++I     HGHG +AV LF  ML EG+ PD + F  +L+ACSH GLV++G
Sbjct: 512 IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
              FE MQ  Y I PS +HY CMVD+ GR G L++A + + SM ++P AS WGALL AC+
Sbjct: 572 QWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACR 631

Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
           ++ +++LG++ +  LFE+EP++ G +VLLSN+YA+A +W  V  +RS    +GLRK PG 
Sbjct: 632 VHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGW 691

Query: 572 SSL 574
           SS+
Sbjct: 692 SSM 694



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 238/484 (49%), Gaps = 31/484 (6%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL-CHSLATPLSYSTAVFNRIVNPN 100
           TL + C        +H+ ++     Q+  + A  ++L C+     L+  T  F+ I N +
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHT--FDHIQNRD 116

Query: 101 TFLWNTLLKGYSQ---NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            + WN ++ GY +   +S  I  F++F  ++     PD  TFP V+KAC  V+   +G  
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTVI---DGNK 171

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH   +++G   DV+V  SLI LY + K +  AR +FDEMP R++ SW AMI GY   G+
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDG 273
             EA T+ + +    +V+  +L+    + GD      +         E  +     +ID 
Sbjct: 232 AKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YA+ G +   + +F+    RD+++W+++I  Y  N QP  A+ +F +M    +QPD   L
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +SL S  SQ+G++     V  +  R    L    +  A+V M AK G +D A  +F  +P
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGW 452
           N DV+S+ ++I G + +G   +A+ +++ M  EG +  ++  +  VL ACS  G +  G 
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471

Query: 453 RFFEAM------QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           +    +       +V+ +         + D+ G+ G L+ A  L   +P   ++  W  L
Sbjct: 472 KLHGRLLKNGLYLDVFVVTS-------LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTL 523

Query: 507 LGAC 510
           + AC
Sbjct: 524 I-AC 526



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 21/257 (8%)

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-D 320
           +NV     +++ Y  +G++  AR  F+   +RDV AW+ +ISGY + G   E ++ FS  
Sbjct: 84  QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF 143

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M S  + PD     S++ AC  V +    N +   L+     +   +V A+L+ + ++  
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVID---GNKIHC-LALKFGFMWDVYVAASLIHLYSRYK 199

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVL 439
            +  A  LF+ MP RD+ S+ +MI G    G+ ++A++     LS GL   D V    +L
Sbjct: 200 AVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLL 254

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMP 495
           +AC+  G    G        + Y+I    E        ++DL    G L+   ++ + M 
Sbjct: 255 SACTEAGDFNRG-----VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMY 309

Query: 496 VEPHASAWGALLGACKL 512
           V    S W +++ A +L
Sbjct: 310 VRDLIS-WNSIIKAYEL 325


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/555 (31%), Positives = 301/555 (54%), Gaps = 75/555 (13%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +  P++  W  ++ GY+Q  +F     +F  ++ ++  P ++T   V+ +C+ V  
Sbjct: 101 VFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVEC 160

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD---------------- 195
           +  G  +H+ V++ G+   + V  SL+++Y K  +   A+ VFD                
Sbjct: 161 LGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISS 220

Query: 196 ---------------EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-------PERSN 233
                          +M ER+VVSW AMI GY   G   EA  +F  M       P++  
Sbjct: 221 HMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFT 280

Query: 234 VS---------------------------------WNALIGGLVKIGDLRSARQLFDE-- 258
           ++                                  NALI    K G +  A+++ ++  
Sbjct: 281 LASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSM 340

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           +   +V+++T ++DGY K+GD+  AR +F++   RDVVAW+A+I GY QNG   +A+++F
Sbjct: 341 ISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELF 400

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M  +  +P+ + L +++S  S + +LD    + +  +RS  + S   V  AL+ M AK
Sbjct: 401 RSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSG-NASSVSVSNALITMYAK 459

Query: 379 CGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
            G+++ A  +F  +   RD +++ SMI  L+ HG G +A++LF+RML  G+ PD + +  
Sbjct: 460 SGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVG 519

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           VL+AC+HVGLVE G  ++  MQN + I+P+P HYACM+DL GR G L+ A+  + +MP+E
Sbjct: 520 VLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIE 579

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           P   AWG+LL +CK++ ++EL E+ A RL  +EP+N+G+Y  L+N+Y+   +W +   +R
Sbjct: 580 PDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIR 639

Query: 558 SKMKERGLRKIPGCS 572
             MK++G++K  G S
Sbjct: 640 KSMKDKGVKKDQGFS 654



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 175/380 (46%), Gaps = 103/380 (27%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G +IHA +I+ G+   VF+  +L++ Y K   I  A +VFDEMP ++V SW  ++ GYA 
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE------------- 261
            G L EA  VF+ MPE  +VSW A+I G  ++G   +A  +F EM               
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 262 -------------RNVVSY-------------TTMIDGYAKVGDMTSARSL--------- 286
                        R V S+              ++++ YAK GD  +A+ +         
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 287 ----------------------FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC-S 323
                                 FE   +RDVV+W+A+ISGY Q+G   EA+ IFS M   
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD--------------------- 362
            + +PD+F L S +SAC+ + NL L   + +++ R+  D                     
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 363 ---------LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
                    +S   VIA  AL+D   K G+++ A  +F+++  RDVV++ +MI G   +G
Sbjct: 332 AQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 391

Query: 412 HGRQAVSLFDRMLSEGLTPD 431
             + A+ LF  M+ EG  P+
Sbjct: 392 FNQDAMELFRSMIKEGPKPN 411



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 33/241 (13%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N L+    K G +  A ++FDEMP ++V S+  ++ GYAK G +  A  +FE  P+ D V
Sbjct: 52  NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+A+I GY Q GQ + A+ +F +M S +V P +F L +++++C+ V  L +   V S++
Sbjct: 112 SWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFV 171

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGN-------------------------------MDRA 385
            + H   S   V  +L++M AK G+                               +D A
Sbjct: 172 VK-HGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLA 230

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSH 444
              FE M  RDVVS+ +MI G + HG  R+A+ +F +ML +  + PD+      L+AC++
Sbjct: 231 QVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACAN 290

Query: 445 V 445
           +
Sbjct: 291 L 291


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 290/519 (55%), Gaps = 39/519 (7%)

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           ++  GL  + S+V   I    SL+ P  L Y+  +F+ I  P+  + N +L+G +Q+ + 
Sbjct: 1   MVVNGLMSNLSVVGELI-YSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKP 59

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            +  +++  + +    PD+YTF  V+KACS +     G A H  V+R G          +
Sbjct: 60  EKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF---------V 110

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237
           ++ Y K                       A+I+ +A+ GDL  A  +FD   +   V+W+
Sbjct: 111 LNEYVK----------------------NALILFHANCGDLGIASELFDDSAKAHKVAWS 148

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           ++  G  K G +  A +LFDEMP ++ V++  MI G  K  +M SAR LF+   ++DVV 
Sbjct: 149 SMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVT 208

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+A+ISGY   G P EA+ IF +M      PD   ++SL+SAC+ +G+L+    +  Y+ 
Sbjct: 209 WNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYIL 268

Query: 358 RSHMDLSRAHVIA----ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            +    S  +V      AL+DM AKCG++DRA E+F  + +RD+ ++ ++I GL++H H 
Sbjct: 269 ETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HA 327

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             ++ +F+ M    + P+EV F  V+ ACSH G V++G ++F  M+++Y I P+ +HY C
Sbjct: 328 EGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGC 387

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+LGR G L+ A+  + SM +EP+A  W  LLGACK+Y ++ELG+    +L  +    
Sbjct: 388 MVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDE 447

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +G YVLLSNIYA+  +W  V  VR    +  ++K  G S
Sbjct: 448 SGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVS 486


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 289/526 (54%), Gaps = 11/526 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  II  G E +  ++   +SL ++    +  +  +F R+ + +   W TL+ GY+QN
Sbjct: 166 EIHGLIITNGFESNLFVMTAVMSL-YAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQN 224

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   + +++      PD  T   ++ A + + ++R G +IH    R G +  V V 
Sbjct: 225 GHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVT 284

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            +L+D+Y K      AR VF  M  + VVSW  MI G A  G+  EA   F  M +   V
Sbjct: 285 NALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV 344

Query: 235 SWNALIGGLV----KIGDLRSA---RQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSL 286
                + G++     +GDL       +L D++  + NV    ++I  Y+K   +  A S+
Sbjct: 345 PTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASI 404

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    ++  V W+A+I GYAQNG   EA+ +F  M S+ ++ D F LV +++A +     
Sbjct: 405 FNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVN 463

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             + W+     R+ MD +   V  ALVDM AKCG +  A +LF+ M  R V+++ +MI G
Sbjct: 464 RQAKWIHGLAVRACMD-NNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDG 522

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              HG G++ + LF+ M    + P+++ F  V++ACSH G VE+G   F++MQ  Y + P
Sbjct: 523 YGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEP 582

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + +HY+ MVDLLGR G L  A+  +  MP++P  S  GA+LGACK++ ++ELGE  A +L
Sbjct: 583 TMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKL 642

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           F+L+P   G +VLL+NIYA+   W  V  VR+ M+++GL K PGCS
Sbjct: 643 FKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCS 688



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 236/481 (49%), Gaps = 23/481 (4%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           ++ L++ C  +  L+Q+   IIK G   +H      ISL     +  S +  VF  +   
Sbjct: 50  SVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSN-SEAARVFEHVELK 108

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
              L++ +LKGY++NS   +    F+R++ +E       +  +++ C   L +++G  IH
Sbjct: 109 LDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIH 168

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +I  G + ++FV T+++ LY K ++I  A K+F+ M  +++VSWT ++ GYA  G   
Sbjct: 169 GLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAK 228

Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMI 271
            A  +   M E      +V+  +++  +  +  LR  R +    F    E  V     ++
Sbjct: 229 RALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALL 288

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y K G    AR +F+    + VV+W+ +I G AQNG+ +EA   F  M  +   P   
Sbjct: 289 DMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRV 348

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            ++ ++ AC+ +G+L+   +V   L +  +D S   V+ +L+ M +KC  +D AA +F  
Sbjct: 349 TMMGVLLACANLGDLERGWFVHKLLDKLKLD-SNVSVMNSLISMYSKCKRVDIAASIFNN 407

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED- 450
           +   + V++ +MI G + +G  ++A++LF  M S+G+  D      V+TA +   +    
Sbjct: 408 LEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQA 466

Query: 451 ----GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
               G      M N   +  +      +VD+  + G +K+A +L + M  E H   W A+
Sbjct: 467 KWIHGLAVRACMDNNVFVSTA------LVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAM 519

Query: 507 L 507
           +
Sbjct: 520 I 520


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 284/493 (57%), Gaps = 13/493 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+++   N   W  ++  ++Q     +   +F+ +     VPD++T+  V+ AC+ +  
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCARKVFDEMPERNVVSWTAM 208
           +  G  +H+ VIR G+  DV VG SL+D+Y K      +  +RKVF++MPE NV+SWTA+
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 209 IVGYASVGDL-VEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           I  YA  G+   EA  +F  M     R N  S+++++     + D  +  Q++    +  
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 186

Query: 264 VVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           + S      ++I  YA+ G M  AR  F+   ++++V+++A++ GYA+N + +EA  +F+
Sbjct: 187 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 246

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
           ++    +    F   SL+S  + +G +     +   L +     S   +  AL+ M ++C
Sbjct: 247 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNALISMYSRC 305

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           GN++ A ++F  M +R+V+S+ SMI G + HG   +A+ +F +ML  G  P+E+ +  VL
Sbjct: 306 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 365

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +ACSHVG++ +G + F +M   + IVP  EHYACMVDLLGR+G L  A E +NSMP+   
Sbjct: 366 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 425

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A  W  LLGAC+++ + ELG   A  + E EP +  +Y+LLSN++A+A +W DV  +R  
Sbjct: 426 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 485

Query: 560 MKERGLRKIPGCS 572
           MKER L K  GCS
Sbjct: 486 MKERNLIKEAGCS 498



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 199/401 (49%), Gaps = 20/401 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY--STAVFNRIVNPNTFLWNTLLKGYS 112
           Q+HS +I+ GL  D  +    + +    A   S   S  VF ++   N   W  ++  Y+
Sbjct: 72  QLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYA 131

Query: 113 QNSRF-IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           Q+     E   +F ++I     P+ ++F  V+KAC ++     G  +++  ++ G+    
Sbjct: 132 QSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN 191

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
            VG SLI +Y +   +  ARK FD + E+N+VS+ A++ GYA      EA  +F+ + + 
Sbjct: 192 CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADT 251

Query: 232 ----SNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSA 283
               S  ++ +L+ G   IG +    Q+   +     + N      +I  Y++ G++ +A
Sbjct: 252 GIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 311

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F    DR+V++W+++I+G+A++G    A+++F  M     +P+E   V+++SACS V
Sbjct: 312 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 371

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
           G +       + + + H  + R    A +VD+  + G +  A E   +MP   D + + +
Sbjct: 372 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 431

Query: 403 MIKGLSIHGH---GRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           ++    +HG+   GR A  +   +L +   PD+ A  I+L+
Sbjct: 432 LLGACRVHGNTELGRHAAEM---ILEQ--EPDDPAAYILLS 467



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 174/331 (52%), Gaps = 42/331 (12%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGL 243
           A KVFD+MPERN+V+WT MI  +A +G   +A  +F        +P+R   ++++++   
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLSAC 61

Query: 244 VKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKV---GDMTSARSLFEAAPDRDVV 296
            ++G L   +QL   +       +V    +++D YAK    G +  +R +FE  P+ +V+
Sbjct: 62  TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 297 AWSALISGYAQNGQPD-EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +W+A+I+ YAQ+G+ D EA+++F  M S +++P+ F   S++ AC  + +      V SY
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 356 LSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
             +  + ++  + +  +L+ M A+ G M+ A + F+ +  +++VSY +++ G + +    
Sbjct: 182 AVK--LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 239

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----------LVEDGWRFFEAMQNVYA 463
           +A  LF+ +   G+      F  +L+  + +G           L++ G++  + + N   
Sbjct: 240 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA-- 297

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
                     ++ +  R G++++A+++ N M
Sbjct: 298 ----------LISMYSRCGNIEAAFQVFNEM 318


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 262/452 (57%), Gaps = 8/452 (1%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           ++R    PD +TFP +IKACS +     G  IH  V+++G    VF+  SLI +YGK  +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVK 245
              +R+VFDEMP++N VSW+A+I          E  ++F  ++ E S  S  A++  +  
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDG-----YAKVGDMTSARSLFEAAPDRDVVAWSA 300
           +     A  ++  + E N + +   +       +A+ G +  AR LF+    +D+V W+ 
Sbjct: 121 VRSHEEADDVYRVVVE-NGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWAT 179

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
            I  Y +   P EA+ +   M  + + PD   L+ ++ ACS + +  L++ V   ++   
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGF 239

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
                  V  AL+D+  KCG++  A ++F+ M  R+++++ +MI G  +HG GR+A++LF
Sbjct: 240 FYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           D+M +  + PD + F  +L+ACSH GLV +GW  F +M   + + P PEHYACMVD+LGR
Sbjct: 300 DQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L  A + +  MPV P+A+ WGALLGAC+++ +++L E+VA  LF+L+P NAG YV+L
Sbjct: 359 AGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVIL 418

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            NIY    +  +   +R+ MK RG++KI G S
Sbjct: 419 YNIYTLTGKRKEADSIRTLMKNRGVKKIAGYS 450



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 173/381 (45%), Gaps = 26/381 (6%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           P NF  P        +IK C    H     ++H  ++K G  Q    +++ +   +    
Sbjct: 8   PDNFTFP-------FIIKACSCLRHFEFGIRIHQDVVKFGY-QSQVFISNSLITMYGKCD 59

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
               S  VF+ + + N   W+ ++    Q+ R  E F++F +++ E + P +     ++ 
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GAILN 116

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A + V S  E   ++  V+  G+D D  V ++   ++ +   +  ARK+FD +  +++V+
Sbjct: 117 AMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           W   I  Y      +EA  +   M  +        + G+++     ++ QL   +     
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT 236

Query: 265 VSY---------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
             +         T +ID Y K G +T AR +F+   +R+++ WSA+ISGY  +G   EA+
Sbjct: 237 TGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREAL 296

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW-VDSYLSRSHMDLSRAHVIAALVD 374
            +F  M   +V+PD    VS++SACS  G L    W   + ++R      R    A +VD
Sbjct: 297 NLFDQM-KASVKPDHITFVSILSACSHSG-LVAEGWECFNSMARDFGVTPRPEHYACMVD 354

Query: 375 MNAKCGNMDRAAELFETMPNR 395
           +  + G +D A +  E MP R
Sbjct: 355 ILGRAGKLDEACDFIERMPVR 375



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 20/285 (7%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL---VAHFISLCHSLATPLSY 88
           P    +L+A+  ++  +    +++V   +++ GL+ D S+    A   + C  +      
Sbjct: 109 PSRGAILNAMACVRSHEEADDVYRV---VVENGLDFDQSVQSAAAGMFARCGRVEV---- 161

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +F+ I++ +   W T ++ Y +    +E   +  +++ +   PD  T   VI+ACS 
Sbjct: 162 ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACST 221

Query: 149 VLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           + S +    +H  +   +  ++ + V T+LIDLY K   ++ ARKVFD M ERN+++W+A
Sbjct: 222 LASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSA 281

Query: 208 MIVGYASVGDLVEAKTVFDLMP---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           MI GY   G   EA  +FD M    +  ++++ +++      G +    + F+ M     
Sbjct: 282 MISGYGMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFG 341

Query: 265 VS-----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
           V+     Y  M+D   + G +  A    E  P R +   W AL+ 
Sbjct: 342 VTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLG 386


>gi|108862694|gb|ABA98288.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 572

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 295/522 (56%), Gaps = 50/522 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGYS 112
           Q+H+H++ +GL          ++L  S ++P  ++ AVF+ +   + N +LW   +  Y+
Sbjct: 29  QLHAHLLIRGLPLPARAA---VALVASSSSP-RHARAVFDSVPAASANVYLWTATISAYA 84

Query: 113 QNSRFI---------EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           +++            E   +F  ++     P+ +T   VIK CS V +V EG  +HA + 
Sbjct: 85  RHASSSSSHALEVAGEAVALFALMLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLA 144

Query: 164 RWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           + G+    V VG +L+DLYG                               ++G + +A+
Sbjct: 145 KAGLGCSSVHVGAALLDLYG-------------------------------NIGLVGDAR 173

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
            VFD MP ++ V  N ++   V+ GD+ +AR++FD M ER+ +S+ T++ GY  +GD  +
Sbjct: 174 RVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTAT 233

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            R LF+    R+V +W+ +I+  ++ G   + VK+F+ M +   +PD   +  LMSAC+Q
Sbjct: 234 VRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQ 293

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF-ETMPNRDVVSYC 401
           +G+L ++  V   L +S ++++  HV  +L+DM AKCG + +A  LF ET P +D VSY 
Sbjct: 294 LGSLTIAGQVHGLLQKSCVEMN-CHVQNSLIDMYAKCGCISQAQFLFTETYP-KDTVSYN 351

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            MI   + HGH R A+ LF+ M+  GL PD V F  VL+AC+H GLVE G  +FE M+  
Sbjct: 352 VMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTT 411

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           YA+  SP+HYAC+VDL GR G ++ A+  + +MPV+PHA  WGALL AC+ +  +++GE+
Sbjct: 412 YAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEI 471

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            A  L  +EP+N G+YVLL N  A   +W  V  V+  M+ +
Sbjct: 472 AAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRK 513


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 170/504 (33%), Positives = 290/504 (57%), Gaps = 11/504 (2%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  +  VF RI + N   W +++ G  QN    +   +F ++ ++   P +YT 
Sbjct: 210 YAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTI 269

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             VI ACS +  + +G  +H +VI+ G+  + F+  +L+D+Y K  E+  AR VFDE+  
Sbjct: 270 ATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSY 329

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV-----KIGDLRSARQ 254
            ++V WT MIVGY   G+ ++A  +F L    +N++ N++    V     ++ DL   + 
Sbjct: 330 IDLVLWTTMIVGYTQNGNPLDALRLF-LDKRFANIAPNSVTTATVLSASAQLRDLSLGKS 388

Query: 255 LFDEMPERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +     +  +V Y      ++D YAK   ++ A  +F    ++DVVAW+++ISGYA+N  
Sbjct: 389 IHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNM 448

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            D+A+ +F  M  +   PD   +V+ +SA   +G+L +   +  Y  + H  +S  +V  
Sbjct: 449 GDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVK-HAFVSNIYVDT 507

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           AL+++  KCG++  A  +F+ M +R+ V++C+MI G  + G    ++ LF  ML +G+ P
Sbjct: 508 ALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYP 567

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           +++AFT +L+ CSH G+V  G R+F++M   + I PS +HYACMVD+L R G+L+ A E 
Sbjct: 568 NDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEF 627

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +++MP++   S WGA L  C+L+S ++  E    R+  L P+    YVL+SN+Y +   W
Sbjct: 628 IDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMW 687

Query: 551 LDVCLVRSKMKERGLRKIPGCSSL 574
                +R  M+E+GL K+PGCSS+
Sbjct: 688 DKSLAIRRWMQEKGLVKLPGCSSV 711



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 224/450 (49%), Gaps = 19/450 (4%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP---D 135
           C++    L+ +  VF+    P+ + +  +L    Q  R  +   +   + R    P   D
Sbjct: 106 CYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQD 165

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
            +   L +KAC        G ++H   I+ G   D FV  SL+D+Y K +++ CARKVF+
Sbjct: 166 DFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFE 224

Query: 196 EMPERNVVSWTAMIV-----GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
            +P+RNVVSWT+MI      G+AS G L+  K   D +P  S  +   +I     +  L 
Sbjct: 225 RIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPP-SEYTIATVITACSALFGLH 283

Query: 251 SARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
             R +   + ++ ++S +     ++D Y K G++  AR +F+     D+V W+ +I GY 
Sbjct: 284 QGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYT 343

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           QNG P +A+++F D    N+ P+     +++SA +Q+ +L L   +     +  + L   
Sbjct: 344 QNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVK--LGLVEY 401

Query: 367 HVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
           +V+  ALVDM AKC  +  A  +F  + N+DVV++ SMI G + +  G  A+ LF +M  
Sbjct: 402 NVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSL 461

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
           +G +PD ++    L+A   +G +  G +        +A V +      +++L  + G L 
Sbjct: 462 QGSSPDAISVVNALSASVCLGDLLIG-KSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLL 520

Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSD 515
           SA  + + M  + ++  W A++G   +  D
Sbjct: 521 SARRVFDEMN-DRNSVTWCAMIGGYGMQGD 549



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 148/293 (50%), Gaps = 16/293 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H   +K GL + +++V + +   ++    +S +  +F RI N +   WN+++ GY++N+
Sbjct: 389 IHGLAVKLGLVE-YNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENN 447

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +   +F ++  + + PD  +    + A   +  +  G +IH   ++     +++V T
Sbjct: 448 MGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDT 507

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L++LY K  ++  AR+VFDEM +RN V+W AMI GY   GD   +  +F  M +     
Sbjct: 508 ALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYP 567

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSL 286
           +++++ +++      G + + ++ FD M +   ++     Y  M+D  A+ G++  A   
Sbjct: 568 NDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEF 627

Query: 287 FEAAP-DRDVVAWSALISG---YAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
            +  P   D   W A + G   +++    +EA+K    M     +PD ++L+S
Sbjct: 628 IDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRM--MVLHPERPDLYVLIS 678


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/390 (41%), Positives = 240/390 (61%), Gaps = 5/390 (1%)

Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
           +I  A +VF  MP R+V SW  M+ G +  G + EA+ +F  MP R+ VSWNA++     
Sbjct: 87  DIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARAS 146

Query: 246 IGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
            GD+ +A  LF   PE+ + + +T M+ GY   G++  A   F A P R++V+W+A+++G
Sbjct: 147 SGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAG 206

Query: 305 YAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           Y +N +  +A+++F  M     VQP+   L S++  CS +  L     V  +  +  + L
Sbjct: 207 YVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMK--LPL 264

Query: 364 SRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            R+  +  +L+ M  KCG++D A +LF+ M  +D+V++ +MI G + HG GR+A+ LF++
Sbjct: 265 GRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEK 324

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M  EG+ PD +    VLTAC H GL + G + FE MQ  Y I P  +HY+CMVDLL R G
Sbjct: 325 MKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAG 384

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
            L+ A  +++SMP EPH SA+G LL AC++Y ++E  E  A +L E +PQNAG+YV L+N
Sbjct: 385 LLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLAN 444

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           IYA A+RW DV  VR  MK+  + K PG S
Sbjct: 445 IYAVANRWDDVSRVRRWMKDNAVVKTPGYS 474



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 16/324 (4%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           CH     +  +  VF+ +   +   WNT++ G S+N    E   +F  +    AV   + 
Sbjct: 81  CHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAV--SWN 138

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
             +  +A S  +   E    +A         D  + T+++  Y     +  A + F  MP
Sbjct: 139 AMVAARASSGDMGAAENLFRNAPE-----KTDAILWTAMVSGYMDTGNVQKAMEYFRAMP 193

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN------ALIG--GLVKIGDLR 250
            RN+VSW A++ GY       +A  VF  M E + V  N       L+G   L  +G  R
Sbjct: 194 VRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGR 253

Query: 251 SARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
              Q   ++P  R++   T+++  Y K GD+  A  LF+    +D+VAW+A+ISGYAQ+G
Sbjct: 254 QVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHG 313

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
              +A+K+F  M  + V PD   L+++++AC   G  D        +  ++    +    
Sbjct: 314 GGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHY 373

Query: 370 AALVDMNAKCGNMDRAAELFETMP 393
           + +VD+  + G ++RA  +  +MP
Sbjct: 374 SCMVDLLCRAGLLERAVNMIHSMP 397



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+  +  CG++D A  +F TMP RDV S+ +M+ GLS +G   +A ++F  M +     +
Sbjct: 78  LLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR----N 133

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH---YACMVDLLGRTGHLKSAY 488
            V++  ++ A +  G +        A +N++   P       +  MV     TG+++ A 
Sbjct: 134 AVSWNAMVAARASSGDM-------GAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAM 186

Query: 489 ELLNSMPVEPHASAWGALLGA 509
           E   +MPV    S W A++  
Sbjct: 187 EYFRAMPVRNLVS-WNAVVAG 206


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/444 (40%), Positives = 265/444 (59%), Gaps = 11/444 (2%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           + +++  C +  +VREG  +HA +I+      V++ T LI LY K + + CAR VFDEM 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQ 254
           ERNVVSWTAMI GY+  G   EA  +F  M     E +  ++  ++            RQ
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 255 LFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +   + +RN  ++    ++++D YAK G +  AR +FE  P+RDVV+ +A+ISGYAQ G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            +EA+++F  +  + +  +     SL++A S +  LD    V S++ R  +      +  
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVV-LQN 251

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LT 429
           +L+DM +KCGN++ A ++F  MP R V+S+ +M+ G S HG G + V LF  M  E  + 
Sbjct: 252 SLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVK 311

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY-AIVPSPEHYACMVDLLGRTGHLKSAY 488
           PD V F  VL+ CSH GL + G   F+ M N    I    EHY C++DLLGR G ++ A+
Sbjct: 312 PDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAF 371

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           EL+  MP EP A+ WG+LLGAC+++S+  +GE V  RL E+EP+NAG+YV+LSN+YA+A 
Sbjct: 372 ELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAG 431

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW DV  VR  M E+ + K PG S
Sbjct: 432 RWEDVRNVRELMMEKAVIKEPGRS 455



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 183/351 (52%), Gaps = 13/351 (3%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
            +VH+H+IK        L    I L ++    L  +  VF+ +   N   W  ++ GYSQ
Sbjct: 30  QRVHAHMIKTCYLPPVYLSTRLIIL-YTKCECLGCARHVFDEMRERNVVSWTAMISGYSQ 88

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
                E   +FV+++R +  P+++TF  V+ +C+       G  IH+ + +   +  +FV
Sbjct: 89  RGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFV 148

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-- 231
           G+SL+D+Y K   I  AR VF+ +PER+VVS TA+I GYA +G   EA  +F  +     
Sbjct: 149 GSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGM 208

Query: 232 -SN-VSWNALIGGLVKIGDLRSARQLFD-----EMPERNVVSYTTMIDGYAKVGDMTSAR 284
            SN V++ +L+  L  +  L   +Q+       E+P   VV   ++ID Y+K G++  AR
Sbjct: 209 SSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP-FYVVLQNSLIDMYSKCGNLNYAR 267

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQV 343
            +F   P R V++W+A++ GY+++G+  E VK+F  M  +N V+PD    ++++S CS  
Sbjct: 268 KIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHG 327

Query: 344 GNLDLS-NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           G  D      D  ++      +       ++D+  + G ++ A EL + MP
Sbjct: 328 GLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMP 378



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 21/248 (8%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           N+   + LL+AL+ +       H  QVHSH+++  L     L    I + +S    L+Y+
Sbjct: 211 NYVTYASLLTALSGLAALD---HGKQVHSHVLRCELPFYVVLQNSLIDM-YSKCGNLNYA 266

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKACS 147
             +FN +       WN +L GYS++ + IEV  +F +L+REE    PD  TF  V+  CS
Sbjct: 267 RKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLF-KLMREENKVKPDSVTFLAVLSGCS 325

Query: 148 HVLSVREGTAIHAAVIRWG--VDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVS 204
           H     +G  +   ++  G  ++  +     +IDL G+   +  A ++  +MP E     
Sbjct: 326 HGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAI 385

Query: 205 WTAM-----IVGYASVGDLVEAKTVFDLMPERSN--VSWNALIGGLVKIGDLRSARQLFD 257
           W ++     +    ++G+ V  + + ++ PE +   V  + L     +  D+R+ R+L  
Sbjct: 386 WGSLLGACRVHSNTNIGEFVGCR-LLEIEPENAGNYVILSNLYASAGRWEDVRNVREL-- 442

Query: 258 EMPERNVV 265
            M E+ V+
Sbjct: 443 -MMEKAVI 449


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 296/560 (52%), Gaps = 29/560 (5%)

Query: 29   INFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLAT 84
              FP  +   + L  I  C++      VH+H+IK     D     + V  F+  C SL  
Sbjct: 649  FTFPFVAKACARLAYIGYCEM------VHTHLIKSPFWSDVFVGTATVDMFVK-CDSL-- 699

Query: 85   PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
               Y+  VF R+   +   WN +L G+ Q+    +VF++F  +  +E  PD  T   +I+
Sbjct: 700  --DYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTLIQ 757

Query: 145  ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNV 202
            + S   S++    +HA  IR GVD    V  + I  YGK  ++  A+ VF+  +  +R V
Sbjct: 758  SASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTV 817

Query: 203  VSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLF 256
            VSW ++   +A  G+  +A   + LM      P+ S  ++  L         L   R + 
Sbjct: 818  VSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLS--TFINLAASCQNPQTLTQGRLIH 875

Query: 257  DEM----PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                    ++++ +  T I  Y+K GD  SAR LF+  P R  V+W+ +ISGYA+ G  D
Sbjct: 876  SHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMD 935

Query: 313  EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
            EA+ +F  M    V PD   L+SL+S C + G+L++  W+D              V  AL
Sbjct: 936  EALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNAL 995

Query: 373  VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
            +DM +KCG++D A ++F+    + +V++ +MI G +++G   +A+ LF +M+     P+ 
Sbjct: 996  IDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNH 1055

Query: 433  VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
            + F  VL AC+H G +E GW +F  M+ VY I P  +HY+CMVDLLGR G L  A EL++
Sbjct: 1056 ITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIH 1115

Query: 493  SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
            +M  +P A  WGALL ACK++ ++++ E  A+ LF LEPQ A  YV +SNIYA A  W  
Sbjct: 1116 NMSAKPDAGIWGALLSACKIHRNVKIAEQAADSLFNLEPQMAAPYVEMSNIYAAAGMWDG 1175

Query: 553  VCLVRSKMKERGLRKIPGCS 572
               +RS MK   ++K PG S
Sbjct: 1176 FARIRSMMKLWNIKKYPGES 1195



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 186/421 (44%), Gaps = 16/421 (3%)

Query: 104  WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
            WN  ++     +  +E   +F  + R    P+ +TFP V KAC+ +  +     +H  +I
Sbjct: 616  WNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLI 675

Query: 164  RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
            +     DVFVGT+ +D++ K   +  A KVF+ MP R+  +W AM+ G+   G   +  +
Sbjct: 676  KSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFS 735

Query: 224  VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYA 275
            +F  M        +  +  L++      + +L   M         +       T I  Y 
Sbjct: 736  LFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYG 795

Query: 276  KVGDMTSARSLFEA--APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
            K GD+ SA+ +FEA    DR VV+W+++   +A  G+  +A   +  M     +PD    
Sbjct: 796  KCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTF 855

Query: 334  VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            ++L ++C     L     + S+      D      I   + M +K G+   A  LF+ MP
Sbjct: 856  INLAASCQNPQTLTQGRLIHSHAIHLGTDQD-IEAINTFISMYSKSGDSCSARLLFDIMP 914

Query: 394  NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +R  VS+  MI G +  G   +A++LF  M   G+ PD V    +++ C   G +E G +
Sbjct: 915  SRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIG-K 973

Query: 454  FFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
            + +   ++Y          C  ++D+  + G +  A ++ ++   E     W  ++    
Sbjct: 974  WIDGRADMYG-CKKDNVMVCNALIDMYSKCGSIDEARDIFDNTS-EKTMVTWTTMIAGYA 1031

Query: 512  L 512
            L
Sbjct: 1032 L 1032


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 294/553 (53%), Gaps = 81/553 (14%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHV--LSVREGT 156
           +T L N ++  Y++ S       +F  L+   ++ PD Y+F  ++ A  H+  +SVR   
Sbjct: 120 DTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCA 179

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC---ARKVFDEMPERNVVSWT------- 206
            +H +V++ G    + V  +L+ LY K +       ARKV DEMP ++ ++WT       
Sbjct: 180 QLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYV 239

Query: 207 ------------------------AMIVGYASVGDLVEAKTVF----------------- 225
                                   AMI GY   G  VEA  +F                 
Sbjct: 240 RRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 226 --------------------------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
                                     + +PE +    NAL+    K G++  AR++FD M
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
             ++VVS+ T++ GY +   +  A  +FE  P ++ ++W  ++SGY   G  ++A+K+F+
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M S+NV+P ++     ++AC ++G L     +  ++ +   + S +    AL+ M A+C
Sbjct: 420 KMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNS-AGNALITMYARC 478

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A  +F  MPN D VS+ +MI  L  HGHGR+A+ LFDRM++EG+ PD ++F  VL
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           TAC+H GLV++G+R+FE+M+  + I+P  +HY  ++DLLGR G +  A +L+ +MP EP 
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
            S W A+L  C+   D+ELG   A++LF++ PQ+ G+Y+LLSN Y+ A  W+D   VR  
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKL 658

Query: 560 MKERGLRKIPGCS 572
           M++RG++K PGCS
Sbjct: 659 MRDRGVKKEPGCS 671



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 161/348 (46%), Gaps = 43/348 (12%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + +VF  +      +WN ++ GY  +   +E F +F R++ E    D++TF  V+ AC++
Sbjct: 247 ARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 149 VLSVREGTAIHAAVIRWG---VDEDVF-VGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           V     G ++H  +IR     V E    V  +L+  Y K   I+ AR++FD M  ++VVS
Sbjct: 307 VGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS 366

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           W  ++ GY     L +A  VF+ MP ++ +SW  ++ G V  G    A +LF++M   NV
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENV 426

Query: 265 --VSYT-------------------------------------TMIDGYAKVGDMTSARS 285
               YT                                      +I  YA+ G +  A  
Sbjct: 427 KPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHL 486

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F   P+ D V+W+A+IS   Q+G   EA+++F  M ++ + PD    +++++AC+  G 
Sbjct: 487 MFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGL 546

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +D        + R    +        L+D+  + G +  A +L +TMP
Sbjct: 547 VDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP 594



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 144/351 (41%), Gaps = 63/351 (17%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIK--------KGLEQDHSLVAHFISLCHSLATPLSYST 90
           S L+      L  H   VH  II+          L  +++LV  F S C ++A     + 
Sbjct: 299 SVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVT-FYSKCGNIAV----AR 353

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNS---RFIEVF-------------------------- 121
            +F+ +   +   WNT+L GY ++S   + +EVF                          
Sbjct: 354 RIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAED 413

Query: 122 --TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
              +F ++  E   P  YT+   I AC  + +++ G  +H  +++ G +     G +LI 
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSN 233
           +Y +   +  A  +F  MP  + VSW AMI      G   EA  +FD M      P+R  
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR-- 531

Query: 234 VSWNALI-----GGLVKIG--DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           +S+  ++      GLV  G     S ++ F  +P  +   YT +ID   + G +  AR L
Sbjct: 532 ISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGED--HYTRLIDLLGRAGRIGEARDL 589

Query: 287 FEAAPDRDVVA-WSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-EFILVS 335
            +  P     + W A++SG   +G  +        +     Q D  +IL+S
Sbjct: 590 IKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLS 640



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 112/244 (45%), Gaps = 44/244 (18%)

Query: 248 DLRSARQLF--DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALIS 303
           DL +A  LF  D  P    VS T+++  YA    + +A S F+A P   RD V  +A+IS
Sbjct: 74  DLPAAATLFCADPCP----VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVIS 129

Query: 304 GYAQNGQPDEAVKIF-SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            YA+      AV +F S + S +++PD++   +L+SA   + N+ + +    + S     
Sbjct: 130 AYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSG 189

Query: 363 LSRA-HVIAALVDMNAKCGNMDR---AAELFETMPNRD-------VVSYC---------- 401
              A  V  ALV +  KC + +    A ++ + MPN+D       VV Y           
Sbjct: 190 AGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARS 249

Query: 402 --------------SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
                         +MI G    G   +A  LF RM+ E +  DE  FT VL+AC++VGL
Sbjct: 250 VFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGL 309

Query: 448 VEDG 451
              G
Sbjct: 310 FAHG 313


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 267/460 (58%), Gaps = 15/460 (3%)

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184
           +R++ +E+ P + T+ L+I  C H  S+ +   +H  ++  G D+D F+ T LI +Y   
Sbjct: 66  IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125

Query: 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSW-- 236
             +  ARKVFD+  +R +  W A+       G   E   ++  M       +R   ++  
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVL 185

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPD 292
            A +     +  L   +++   +  R   S+    TT++D YA+ G +  A  +F   P 
Sbjct: 186 KACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPV 245

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMC--SKNVQPDEFILVSLMSACSQVGNLDLSN 350
           R+VV+WSA+I+ YA+NG+  EA++ F +M   +K+  P+   +VS++ AC+ +  L+   
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            +  Y+ R  +D S   VI+ALV M  +CG ++    +F+ M +RDVVS+ S+I    +H
Sbjct: 306 LIHGYILRRGLD-SILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G+G++A+ +F+ ML+ G +P  V F  VL ACSH GLVE+G R FE M   + I P  EH
Sbjct: 365 GYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEH 424

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           YACMVDLLGR   L  A +++  M  EP    WG+LLG+C+++ ++EL E  + RLF LE
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           P+NAG+YVLL++IYA A  W +V  V+  ++ RGL+K+PG
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 191/402 (47%), Gaps = 22/402 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VH HI+  G +QD  L    I +   L + + Y+  VF++      ++WN L +  +  
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSDLGS-VDYARKVFDKTRKRTIYVWNALFRALTLA 156

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC----SHVLSVREGTAIHAAVIRWGVDED 170
               EV  ++ ++ R     D++T+  V+KAC      V  + +G  IHA + R G    
Sbjct: 157 GHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLMP 229
           V++ T+L+D+Y +   +  A  VF  MP RNVVSW+AMI  YA  G   EA +T  ++M 
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276

Query: 230 ERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDM 280
           E  + S N     +++     +  L   + +   +  R + S   +I      Y + G +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
              + +F+   DRDVV+W++LIS Y  +G   +A++IF +M +    P     VS++ AC
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDV 397
           S  G ++    +   + R H    +    A +VD+  +   +D AA++ + M   P   V
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
             + S++    IHG+   A     R+ +  L P      ++L
Sbjct: 457 --WGSLLGSCRIHGNVELAERASRRLFA--LEPKNAGNYVLL 494



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 107/232 (46%), Gaps = 20/232 (8%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           ++ +++++ C     L Q   +H +I+++GL+    +++  +++ +     L     VF+
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTM-YGRCGKLEVGQRVFD 344

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           R+ + +   WN+L+  Y  +    +   IF  ++   A P   TF  V+ ACSH   V E
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404

Query: 155 GTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGY 212
           G  +   + R  G+   +     ++DL G+   +  A K+  +M  E     W +++ G 
Sbjct: 405 GKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL-GS 463

Query: 213 ASVGDLVE-----AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
             +   VE     ++ +F L P+ +        G  V + D+ +  Q++DE+
Sbjct: 464 CRIHGNVELAERASRRLFALEPKNA--------GNYVLLADIYAEAQMWDEV 507


>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
          Length = 752

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 265/480 (55%), Gaps = 75/480 (15%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK-------RKE 186
           P+ +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +          
Sbjct: 109 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGGG 168

Query: 187 ISCARKVFDEM-------------------------------PERNVVSWTAMIVGYASV 215
           +  AR+VFDEM                               PERNVVSW  ++ G+A +
Sbjct: 169 VGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARM 228

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
           GD+V A+ VFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T M+  YA
Sbjct: 229 GDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYA 288

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILV 334
           K+GD+ +A  LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LV
Sbjct: 289 KIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLV 348

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S++SAC+Q+G+++  NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  +F  M  
Sbjct: 349 SVVSACAQLGSVEYCNWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAQSIFYKMET 407

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           R ++++ +MI G + +G  R A+ +++ M  EG+  D+  F   L AC+H GL+++GW  
Sbjct: 408 RCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSI 467

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           F  M   Y I P  EHY CMVDLLGR                                  
Sbjct: 468 FNEMVERYNIQPRMEHYGCMVDLLGRA--------------------------------- 494

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             EL E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 495 --ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSI 552



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 10/197 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIK 144
           L  +  +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ 
Sbjct: 293 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 352

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +  +   V +G +LID++ K  ++  A+ +F +M  R +++
Sbjct: 353 ACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 412

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT MI G+A  G   +A  V++ M        +  + A +      G L+    +F+EM 
Sbjct: 413 WTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMV 472

Query: 261 ERNVVS-----YTTMID 272
           ER  +      Y  M+D
Sbjct: 473 ERYNIQPRMEHYGCMVD 489



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 49/222 (22%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V P+ F    L+ AC+ +G       V   + R     S   V  AL+D+  +CG   
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALMDVYHRCGGGG 163

Query: 384 R-------AAELFETMPNRDVVSYCSM-------------------------------IK 405
                   A ++F+ M +RDVVS+ S+                               + 
Sbjct: 164 GGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVA 223

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G +  G    A ++FDRM S     + V++ ++++  +  G VE     F+ M     + 
Sbjct: 224 GFARMGDMVTARAVFDRMPSR----NAVSWNLMISGYATSGDVEAARSVFDRMDQKDVV- 278

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                +  MV    + G L +A EL + MPV+   S W A++
Sbjct: 279 ----SWTAMVSAYAKIGDLDTANELFDHMPVKNLVS-WNAMI 315


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/538 (34%), Positives = 286/538 (53%), Gaps = 74/538 (13%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+   WN+ L G +Q+   +     F     +E V D  ++ L++        +   ++ 
Sbjct: 172 PDLVSWNSALAGLTQSGEMVRAVQFF-----DEMVKDMTSWNLMLAGFVRTGDLNAASSF 226

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            A +       +V    +L++ Y +   I+ AR +FD MPERNVV+W  M+ GY  +  +
Sbjct: 227 FAKI----ESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPI 282

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS--------------------------- 251
            EA  +FD MP ++++SW  +I GL + G L+                            
Sbjct: 283 EEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRN 342

Query: 252 ----ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
               AR++FD M   + V + TMI GY + G +  A  LF+  P++D+V+W+ +I+GYAQ
Sbjct: 343 MADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQ 402

Query: 308 NGQPDEAVKIFSDMCSKN-----------VQPDEFI--------------------LVSL 336
           +GQ  +A+ IF  M  +N           VQ D F+                      S 
Sbjct: 403 DGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASC 462

Query: 337 MSACSQVGNLDLSNWVDSYLSRS-HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           + AC+ +  L +   + + L RS H++ S A    AL+   AKCG +  A ++F+ M  +
Sbjct: 463 LRACANLAVLHVGRQLHNLLVRSGHINDSFAG--NALISTYAKCGRILEAKQIFDEMVYK 520

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D+VS+ ++I G + +G G +A+++F  M + G+ PDEV F  +L+ACSH GL+++G  FF
Sbjct: 521 DIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFF 580

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            +M   Y + P  EHYACMVDLLGR G L  A+EL+  M ++P+A  WGALLGAC ++ +
Sbjct: 581 YSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKN 640

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
            EL +L A RL ELEP+ A +YVLLSNI A A +W +    R+ +KE+G+ K PG + 
Sbjct: 641 HELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPPGLAG 698



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 168/313 (53%), Gaps = 20/313 (6%)

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG 242
           +  +++ AR++FD MP RN V++ AM+   A  G + EA+ +FD MP R+ VSWNA+I  
Sbjct: 30  RSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAA 89

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSAL 301
           L   G +  AR LFD MP R+  S+T M+  YA+ GD+  AR + +  P D+    ++A+
Sbjct: 90  LSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAM 149

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ISGYA+NG+ D+A+K+  +M +    PD     S ++  +Q G +  +     +      
Sbjct: 150 ISGYAKNGRFDDAMKLLREMPA----PDLVSWNSALAGLTQSGEMVRAV---QFFDEMVK 202

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           D++  +++ A      + G+++ A+  F  + + +V+S+ +++ G    G    A  LFD
Sbjct: 203 DMTSWNLMLAGF---VRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFD 259

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
           RM    +    VA+ ++L    H+  +E+  + F+ M      + +   +  ++  L R 
Sbjct: 260 RMPERNV----VAWNVMLDGYVHLSPIEEACKLFDEMP-----IKNSISWTTIISGLARA 310

Query: 482 GHLKSAYELLNSM 494
           G L+ A +LL+ M
Sbjct: 311 GKLQEAKDLLDKM 323



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 176/361 (48%), Gaps = 38/361 (10%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + A+F+ +   NT  WN ++   S + R  +  ++F R+     V D++++ +++   + 
Sbjct: 68  ARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRM----PVRDEFSWTVMVSCYAR 123

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
              +     +   + R   D+      ++I  Y K      A K+  EMP  ++VSW + 
Sbjct: 124 GGDLELARDV---LDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSA 180

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           + G    G++V A   FD M  +   SWN ++ G V+ GDL +A   F ++   NV+S+ 
Sbjct: 181 LAGLTQSGEMVRAVQFFDEMV-KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWV 239

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           T+++GY + G +  AR LF+  P+R+VVAW+ ++ GY      +EA K+F +M  KN   
Sbjct: 240 TLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKN--- 296

Query: 329 DEFILVSLMSACSQVGNL----DL------------SNWVDSYLSRSHMDLSR------- 365
                 +++S  ++ G L    DL            +  +  YL R+  D +R       
Sbjct: 297 -SISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGME 355

Query: 366 AHVIA---ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            H       ++    +CG ++ A  LF+ MPN+D+VS+ +MI G +  G   +A+ +F R
Sbjct: 356 VHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRR 415

Query: 423 M 423
           M
Sbjct: 416 M 416



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +F R+   NT  WN+++ G+ QN RF++    F+ + R     D  T+   ++AC++
Sbjct: 409 AIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACAN 468

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
           +  +  G  +H  ++R G   D F G +LI  Y K   I  A+++FDEM  +++VSW A+
Sbjct: 469 LAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWNAL 528

Query: 209 IVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           I GYAS G   EA  VF  M         V++  ++      G +      F  M +  +
Sbjct: 529 IDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYL 588

Query: 265 VS-----YTTMIDGYAKVGDMTSARSLFEA---APDRDVVAWSALIS 303
           +      Y  M+D   + G +  A  L +     P+  V  W AL+ 
Sbjct: 589 LKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGV--WGALLG 633


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/485 (35%), Positives = 276/485 (56%), Gaps = 37/485 (7%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHV 149
           ++F+R+   N   W  ++ GY +   F + F +F+R+ +E  V  +  T  ++ +AC   
Sbjct: 229 SLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDF 288

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
              REG+ IH  + R  ++ D+F+G SLI +Y K                          
Sbjct: 289 FRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSK-------------------------- 322

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
                +G + EAK VF +M  + +VSWN+LI GLV+   +  A +LF++MP +++VS+T 
Sbjct: 323 -----LGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTD 377

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           MI G++  G+++    LF   P++D + W+A+IS +  NG  +EA+  F  M  K V P+
Sbjct: 378 MIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPN 437

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAE 387
            +   S++SA + + +L     +   + + +M  DLS   V  +LV M  KCGN + A +
Sbjct: 438 SYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLS---VQNSLVSMYCKCGNTNDAYK 494

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  +   ++VSY +MI G S +G G++AV LF  + S G  P+ V F  +L+AC HVG 
Sbjct: 495 IFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGY 554

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V+ GW++F++M+  Y I P P+HYACMVDL GR+G L  AY L+++MP EPH+  WG+LL
Sbjct: 555 VDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLL 614

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            A K +  ++L EL A +L ELEP +A  YV+LS +Y+   +  D   + +  K + ++K
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSMVGKNSDCDRIMNIKKSKRIKK 674

Query: 568 IPGCS 572
            PG S
Sbjct: 675 DPGSS 679



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 188/409 (45%), Gaps = 81/409 (19%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  + A+F ++ + +   WN ++  Y++N +  + + +F      + +P           
Sbjct: 66  LQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVF------DEMP----------- 108

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
                 VR  T+ +A +            T++I     + ++  A ++F ++PE+N VS+
Sbjct: 109 ------VRATTSYNAMI------------TAMIK---NKCDLGKAYELFCDIPEKNAVSY 147

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
             MI G+   G   EA+ ++   P   R  V+ N L+ G +++G    A ++F+ M  + 
Sbjct: 148 ATMITGFVRAGRFDEAECLYAETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKE 207

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VVSY++M+DGY K+G +  ARSLF+  P+R+V+ W+A+I GY + G  ++   +F  M  
Sbjct: 208 VVSYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQ 267

Query: 324 K-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
           + +V+ +   L  +  AC         + +   LSR  ++     +  +L+ M +K G M
Sbjct: 268 EGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFD-LFLGNSLISMYSKLGYM 326

Query: 383 DRAA-------------------------------ELFETMPNRDVVSYCSMIKGLSIHG 411
             A                                ELFE MP +D+VS+  MIKG S  G
Sbjct: 327 GEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKG 386

Query: 412 HGRQAVSLFDRMLSEGLTP--DEVAFTIVLTACSHVGLVEDGWRFFEAM 458
              + V LF      G+ P  D++ +T +++A    G  E+   +F  M
Sbjct: 387 EISKCVELF------GMMPEKDDITWTAMISAFVSNGYYEEALCWFHKM 429



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 163/370 (44%), Gaps = 60/370 (16%)

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           +F   S I    +   +  A  +F +M  R++VSW AMI  YA  G + +A  VFD MP 
Sbjct: 50  IFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPV 109

Query: 231 RSNVSWNALIGGLVKIG-DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           R+  S+NA+I  ++K   DL  A +LF ++PE+N VSY TMI G+ + G    A  L+  
Sbjct: 110 RATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLYAE 169

Query: 290 AP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
            P   RD VA + L+SGY + G+ +EAV++F  M  K V                   + 
Sbjct: 170 TPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEV-------------------VS 210

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
            S+ VD Y                      K G +  A  LF+ MP R+V+++ +MI G 
Sbjct: 211 YSSMVDGY---------------------CKMGRILDARSLFDRMPERNVITWTAMIDGY 249

Query: 408 SIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              G       LF RM  EG +  +     ++  AC       D +R+ E  Q    +  
Sbjct: 250 FKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRAC------RDFFRYREGSQIHGLLSR 303

Query: 467 SPEHY-----ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
            P  +       ++ +  + G++  A  +   M  +   S W +L+    L    ++ E 
Sbjct: 304 MPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVS-WNSLITG--LVQREQISE- 359

Query: 522 VANRLFELEP 531
            A  LFE  P
Sbjct: 360 -AYELFEKMP 368



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 10/228 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S    +F  +   +   W  ++  +  N  + E    F +++R++  P+ YTF  V+ A
Sbjct: 388 ISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSA 447

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + +  + EG  IH  V++  +  D+ V  SL+ +Y K    + A K+F  + E N+VS+
Sbjct: 448 TASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMP- 260
             MI G++  G   EA  +F ++     E + V++ AL+   V +G +    + F  M  
Sbjct: 508 NTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKF 567

Query: 261 ----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
               E     Y  M+D + + G +  A +L    P +     W +L+S
Sbjct: 568 SYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLS 615


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 304/557 (54%), Gaps = 55/557 (9%)

Query: 55  QVHSHIIK-KG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL-WNTLLKGY 111
           Q+H+HI+K KG L  D+ LV    S        L +S  +FN + +P   L W++++K Y
Sbjct: 30  QLHAHIVKTKGTLHSDNILVLSLYSN----LNLLQHSLHLFNSLPSPPPPLAWSSIIKCY 85

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           + +S     F+ F  +      P+++ FP ++KA + +   +   ++HA  +R G+D D+
Sbjct: 86  TSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDL 145

Query: 172 FVGTSLIDLYGK-------------RKE--ISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           ++  +LI+ Y K             R E  I C +KVFD MP R+VVSW  +I G+A  G
Sbjct: 146 YIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNG 205

Query: 217 DLVEA--------------------KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256
             VEA                     ++  +  E  +V+    I G        + R  F
Sbjct: 206 MYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGY-------AVRNGF 258

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
           D     +V   +++ID YAK   +  +   F   P +D ++W+++I+G  QNG+ D  + 
Sbjct: 259 DG----DVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLG 314

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
            F  M  +NV+P      S++ AC+ +  L L   +   + R   D     + ++LVDM 
Sbjct: 315 FFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFD-DNEFIASSLVDMY 373

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCGN+  A  +F+ +  RD+V++ ++I G ++HGH   AVSLF+ ML +G+ P  VAF 
Sbjct: 374 AKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFM 433

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495
            VLTACSH GLV++GWR+F +M+  + I P  EHYA + DLLGR G L+ AY+ +++M  
Sbjct: 434 AVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRG 493

Query: 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555
           V+P  S W  LL AC+ +  +EL E V ++L  ++ +N G+YVL+SNIY+ A RW D   
Sbjct: 494 VQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAAR 553

Query: 556 VRSKMKERGLRKIPGCS 572
           +R  M+++GL+K P CS
Sbjct: 554 LRIHMRKKGLKKTPACS 570



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 208/449 (46%), Gaps = 42/449 (9%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD---- 68
           H S SS     S S P N      LL A TL+K  KL    H +H+  ++ GL+ D    
Sbjct: 92  HLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLA---HSLHACTVRLGLDSDLYIA 148

Query: 69  ----------HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFI 118
                     H+    F        + +     VF+ +   +   WNT++ G++QN  ++
Sbjct: 149 NALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYV 208

Query: 119 EVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
           E   +   + +   + PD +T   ++   +  + V +G  IH   +R G D DVF+G+SL
Sbjct: 209 EALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSL 268

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----N 233
           ID+Y K   + C+ + F  +P ++ +SW ++I G    G+       F  M + +     
Sbjct: 269 IDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMA 328

Query: 234 VSWNALIGGLVKIGDLRSARQL--------FDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           VS++++I     +  L   RQL        FD+    N    ++++D YAK G++  AR 
Sbjct: 329 VSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD----NEFIASSLVDMYAKCGNIKMARY 384

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F+    RD+VAW+A+I G A +G   +AV +F +M    V+P     +++++ACS  G 
Sbjct: 385 VFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGL 444

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVI---AALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +D   W   Y +    D   A  +   AA+ D+  + G ++ A +    M  R V    S
Sbjct: 445 VD-EGW--RYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNM--RGVQPTGS 499

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +   L       ++V L +++L + L+ D
Sbjct: 500 VWSILLAACRAHKSVELAEKVLDKLLSVD 528


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 267/483 (55%), Gaps = 41/483 (8%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIF--VRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            T  +N LL+G +  S   +   +F  +R       PD YT+PL +K+C+    +  G  
Sbjct: 84  TTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQ 143

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH++  R G+D +VFV  S I +Y +      A ++F+EM  R+V               
Sbjct: 144 IHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDV--------------- 188

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-------PERNVVSYTTM 270
                           VSWNA+I G    G    A  +F E+       P+   ++    
Sbjct: 189 ----------------VSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILP 232

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
             G A+V D+   + +F+    + +++W+A+++ Y  N    EAV++F  M    ++PD 
Sbjct: 233 SMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDA 292

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             L +++ +C +V  L L   +   + R  M  S   +  AL+DM A CG +  A ++F+
Sbjct: 293 VTLATVLPSCGEVSALSLGKRIHEVIKRRRM-CSSMLLENALMDMYANCGCLKEARDVFD 351

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
           +M  RDVVS+ S+I     HGHGR+A+ LF++M  +GL PD +AF  +L ACSH GL++ 
Sbjct: 352 SMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM 411

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F +M + + I P  EHYACMVDLLGR G ++ AY+ +  MP++P+   WGALLGAC
Sbjct: 412 GKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGAC 471

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++S++++G L A+ L  L P+  G YVLLSNIYA A RW DV +VRS M+ +G++K+PG
Sbjct: 472 RIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPG 531

Query: 571 CSS 573
            S+
Sbjct: 532 VSN 534


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 289/525 (55%), Gaps = 10/525 (1%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+ + K G + D + V   +  C+S+      +  VF+ I   +   W  ++  Y +N 
Sbjct: 167 VHACVYKLGFDSD-AFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENE 225

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            F E   +F R+      P+ +TF  V+KAC  +     G A+H    +    E++FVG 
Sbjct: 226 CFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGV 285

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
            LIDLY K  ++  A +VF+EMP+ +V+ W+ MI  YA      EA  +F  M       
Sbjct: 286 ELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLP 345

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLF 287
           +  +  +L+     + DL+   Q+   +     + NV     ++D YAK G M ++  LF
Sbjct: 346 NQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLF 405

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
             +P+   V+W+ +I GY Q G  ++A+ +F DM    VQ  E    S++ AC+ +  L+
Sbjct: 406 SESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALE 465

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
             + + S   ++  D +   V  AL+DM AKCGN+  A  +F+ +   D VS+ +MI G 
Sbjct: 466 PGSQIHSLSVKTIYDKNTV-VGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGY 524

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           S+HG   +A+  F+ ML     PD+V F  +L+ACS+ GL++ G  +F++M   Y I P 
Sbjct: 525 SVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPC 584

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHY CMV LLGR+GHL  A +L++ +P EP    W ALL AC +++D+ELG + A R+ 
Sbjct: 585 AEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVL 644

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E+EP++  ++VLLSNIYA A RW +V  +R+ MK +G+RK PG S
Sbjct: 645 EIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLS 689



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 239/467 (51%), Gaps = 22/467 (4%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLA-TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +H  IIKKG   D  L A+ I L   +    L  +  +F+ + + NT  + TL++GYSQ 
Sbjct: 66  LHCEIIKKGNCLD--LFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQC 123

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            RF E   +F RL  E    + + F  V+K        + G ++HA V + G D D FVG
Sbjct: 124 LRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVG 183

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
           T+LID Y       CAR+VFD +  +++VSWT M+  Y       E+  +F  M     +
Sbjct: 184 TALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFK 243

Query: 231 RSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            +N ++ +++   V +      + +    F       +     +ID Y K GD+  A  +
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQV 303

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE  P  DV+ WS +I+ YAQ+ Q +EA+++F  M    V P++F L SL+ AC+ + +L
Sbjct: 304 FEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDL 363

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            L N +  ++ +  +D++   V  AL+DM AKCG M+ + +LF   PN   VS+ ++I G
Sbjct: 364 QLGNQIHCHVVKVGLDMN-VFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVG 422

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVY--- 462
               G+G +A+ LF  ML   +   EV ++ VL AC+ +  +E G +    +++ +Y   
Sbjct: 423 YVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKN 482

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            +V +      ++D+  + G++K A  L+  M  E    +W A++  
Sbjct: 483 TVVGNA-----LIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMISG 523



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 154/318 (48%), Gaps = 11/318 (3%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           + Y +  ++++C        G  +H  +I+ G   D+F    L++ Y K   +  A K+F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLV-----K 245
           DEMP+RN VS+  +I GY+      EA  +F  +     E +   ++ ++  LV     K
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
           +G       ++    + +    T +ID Y+  G    AR +F+A   +D+V+W+ +++ Y
Sbjct: 163 LG-FSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            +N   +E++K+FS M     +P+ F   S++ AC  +   ++   V     ++   L  
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSY-LEE 280

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V   L+D+  K G++D A ++FE MP  DV+ +  MI   +      +A+ +F RM  
Sbjct: 281 LFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRR 340

Query: 426 EGLTPDEVAFTIVLTACS 443
             + P++     +L AC+
Sbjct: 341 GLVLPNQFTLASLLQACA 358



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
           +Q+H H++K GL+ +   V++ +   ++    +  S  +F+   N     WNT++ GY Q
Sbjct: 367 NQIHCHVVKVGLDMN-VFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQ 425

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
                +   +F  ++  +    + T+  V++AC+ + ++  G+ IH+  ++   D++  V
Sbjct: 426 AGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVV 485

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS- 232
           G +LID+Y K   I  AR VFD + E + VSW AMI GY+  G   EA   F+ M E   
Sbjct: 486 GNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETEC 545

Query: 233 ---NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSAR 284
               V++  ++      G L   +  F  M E   +      YT M+    + G +  A 
Sbjct: 546 KPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAA 605

Query: 285 SLFEAAP-DRDVVAWSALISG 304
            L    P +  V+ W AL+S 
Sbjct: 606 KLVHEIPFEPSVMVWRALLSA 626


>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
 gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
          Length = 601

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 259/474 (54%), Gaps = 71/474 (14%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY---GKRKEISCA 190
           P+ +TF  +++AC  +  +     +H  ++R G   DV V  +L+++Y   G   ++  A
Sbjct: 110 PNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCGDPGDVGVA 169

Query: 191 RKVFDEM-------------------------------PERNVVSWTAMIVGYASVGDLV 219
           RKVFD M                               PERNVVSW  ++  +   GD+V
Sbjct: 170 RKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAFTRAGDMV 229

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A  VFD MP R  +SWN +I G    G++ SAR LFD M  ++VVS+T M+  YAK+GD
Sbjct: 230 SAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMVSAYAKIGD 289

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD-MCSKNVQPDEFILVSLMS 338
           + SAR LF+  PD+++V+W+A+I+GY  N + DEA++ F   M      PDE  LVS++S
Sbjct: 290 LDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSVVS 349

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G+++  NW+ SY+S+S+  ++ A +  AL+DM AKCG++ RA   F+ M  R V+
Sbjct: 350 ACAQLGSVEYCNWISSYISKSNTHITVA-LGNALIDMFAKCGDVGRARLAFDKMKTRCVI 408

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ +MI G + +G  R+A+ ++  +  EG+T D+  F   L AC+H GL+++GW  F+ M
Sbjct: 409 TWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLLQEGWSIFKQM 468

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              Y IVP  EHY C+VDLLGR                                    EL
Sbjct: 469 VEHYGIVPRMEHYGCIVDLLGRA-----------------------------------EL 493

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E V+ R+ E+EP N+   VL+SN  A   RW  V   R  +++RG+ K PG S
Sbjct: 494 TEYVSARVVEIEPFNSSYQVLVSNCSALEGRWGSVMDARKTLRDRGVEKTPGSS 547



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 12/211 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIK 144
           L  +  +F+++ + N   WN ++ GY+ NSR+ E    F +++ E   +PD+ T   V+ 
Sbjct: 290 LDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSVVS 349

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +      V +G +LID++ K  ++  AR  FD+M  R V++
Sbjct: 350 ACAQLGSVEYCNWISSYISKSNTHITVALGNALIDMFAKCGDVGRARLAFDKMKTRCVIT 409

Query: 205 WTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKI---GDLRSARQLFDEMP 260
           WT MI G+A  G   EA  ++ D+  E   +     I  L      G L+    +F +M 
Sbjct: 410 WTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLLQEGWSIFKQMV 469

Query: 261 ERNVV-----SYTTMID--GYAKVGDMTSAR 284
           E   +      Y  ++D  G A++ +  SAR
Sbjct: 470 EHYGIVPRMEHYGCIVDLLGRAELTEYVSAR 500



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 37/217 (17%)

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M +  V P+ F    L+ AC  +  L L   V   + R     S   V  AL+++  KCG
Sbjct: 103 MRAAGVSPNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFG-SDVVVQNALLNVYYKCG 161

Query: 381 N---MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP------- 430
           +   +  A ++F+ M +RDVVS+ S++      G    A+ LF+ +    +         
Sbjct: 162 DPGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAA 221

Query: 431 --------------------DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
                               D +++ ++++  +  G VE     F+ M     +      
Sbjct: 222 FTRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVV-----S 276

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +  MV    + G L SA  L + MP + +  +W A++
Sbjct: 277 WTAMVSAYAKIGDLDSARVLFDQMP-DKNLVSWNAMI 312


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/572 (31%), Positives = 299/572 (52%), Gaps = 64/572 (11%)

Query: 48  KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           K ++   Q+H+ ++K   +         +   +S    L  S  +FN I  P    W ++
Sbjct: 20  KSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSV 77

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV 167
           ++ Y+ +    +    F+ ++     PD   FP V+K+C+ ++ +  G ++H  +IR G+
Sbjct: 78  IRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGL 137

Query: 168 DEDVFVGTSLIDLYGK--------RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           D D++ G +L+++Y K        R+ +  A +VFDEM ER     T  ++   SV    
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLG-AGEVFDEMTERTRSVRTVSVLSEDSV---- 192

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SYT--------- 268
             + +F++MPE+  VSWN +I G  + G      ++  EM   N+   S+T         
Sbjct: 193 --RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 269 ----------------------------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
                                       ++ID YAK   +  +  +F    +RD ++W++
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +I+G  QNG  DE ++ F  M    ++P  +   S+M AC+ +  L L   +  Y++R+ 
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNG 370

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
            D     + ++LVDM AKCGN+  A ++F+ M  RD+VS+ +MI G ++HG    A+ LF
Sbjct: 371 FD-ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELF 429

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
           ++M +EG+         VLTACSH GLV++ W++F +M   + I P  EHYA + DLLGR
Sbjct: 430 EQMETEGIKA-------VLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGR 482

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L+ AY+ +  M + P  S W  LL AC+++ +I++ E VANR+ E++P N G+Y+LL
Sbjct: 483 AGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILL 542

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +NIY+ A RW +    R+ M+  G+RK P CS
Sbjct: 543 ANIYSAARRWKEAAKWRASMRRIGIRKTPACS 574



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 152/321 (47%), Gaps = 33/321 (10%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L S L LI +    +   ++H   I++GL+ D  + +  I + ++  T ++ S  
Sbjct: 237 PDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDM-YAKCTRVADSCR 295

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  +   +   WN+++ G  QN  F E    F +++  +  P  Y+F  ++ AC+H+ +
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  + R G DE++F+ +SL+D+Y K   I  A+++FD M  R++VSWTAMI+G
Sbjct: 356 LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMG 415

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
            A  G   +A  +F+ M         A++      G +  A + F+ M     ++    +
Sbjct: 416 CALHGQAPDAIELFEQMETE---GIKAVLTACSHGGLVDEAWKYFNSMTRDFGIA--PGV 470

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           + YA V D+                          + G+ +EA   +  +C  ++ P   
Sbjct: 471 EHYAAVSDL------------------------LGRAGRLEEA---YDFICGMHIGPTGS 503

Query: 332 ILVSLMSACSQVGNLDLSNWV 352
           I  +L+SAC    N+D++  V
Sbjct: 504 IWATLLSACRVHKNIDMAEKV 524


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/499 (33%), Positives = 294/499 (58%), Gaps = 13/499 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  VF+R+ + N   W  ++  + Q     +   +F+ ++    VPD++T   V+ A
Sbjct: 95  LESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCARKVFDEMPERNV 202
           C+ +  +  G   H  V++ G+D DV VG SL+D+Y K      +  ARKVFD MP  NV
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 203 VSWTAMIVGYASVGDL-VEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFD 257
           +SWTA+I GY   G    EA  +F  M +     ++ ++++++     + D+    Q++ 
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 258 EMPERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            + +  + S      ++I  Y++ G+M +AR  F+   ++++V+++ +++ YA++   +E
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A ++F+++       + F   SL+S  S +G +     + S + +S    S  H+  AL+
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFK-SNLHICNALI 393

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
            M ++CGN++ A ++F  M + +V+S+ SMI G + HG   +A+  F +ML  G++P+EV
Sbjct: 394 SMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEV 453

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
            +  VL+ACSHVGL+ +G + F++M+  + IVP  EHYAC+VDLLGR+GHL+ A EL+NS
Sbjct: 454 TYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNS 513

Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553
           MP +  A      LGAC+++ +++LG+  A  + E +P +  +Y+LLSN++A+A +W +V
Sbjct: 514 MPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEV 573

Query: 554 CLVRSKMKERGLRKIPGCS 572
             +R KMKER L K  GCS
Sbjct: 574 AEIRKKMKERNLTKEAGCS 592



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 221/422 (52%), Gaps = 25/422 (5%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           W+ L+  Y+ N +  E  + F  ++     P++Y F  V +ACS+  ++  G  I   ++
Sbjct: 10  WSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLL 69

Query: 164 RWGVDE-DVFVGTSLIDLYGK-RKEISCARKVFDEMPERNVVSWTAMIVGYASVG----- 216
           + G  E DV VG +LID++ K   ++  A KVFD MP+RNVV+WT MI  +  +G     
Sbjct: 70  KTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDA 129

Query: 217 -DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMI 271
            DL     +   +P+R  +S   ++    ++G L   RQ          + +V    +++
Sbjct: 130 VDLFLDMVLSGYVPDRFTLS--GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLV 187

Query: 272 DGYAKV---GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD-EAVKIFSDMCSKNVQ 327
           D YAK    G +  AR +F+  P  +V++W+A+I+GY Q+G  D EA+++F +M    V+
Sbjct: 188 DMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK 247

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAA 386
           P+ F   S++ AC+ + ++ L   V + + +  M L+  + +  +L+ M ++CGNM+ A 
Sbjct: 248 PNHFTFSSVLKACANLSDIWLGEQVYALVVK--MRLASINCVGNSLISMYSRCGNMENAR 305

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
           + F+ +  +++VSY +++   +   +  +A  LF+ +   G   +   F  +L+  S +G
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
            +  G +    +  + +   S  H    ++ +  R G++++A+++ N M  + +  +W +
Sbjct: 366 AIGKGEQIHSRI--LKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTS 422

Query: 506 LL 507
           ++
Sbjct: 423 MI 424



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 44/292 (15%)

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-------------------RSNVSWNAL 239
           +R++VSW+A+I  YA+     EA + F  M E                   + N+S   +
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 240 IGG-LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV-GDMTSARSLFEAAPDRDVVA 297
           I G L+K G             E +V     +ID + K  GD+ SA  +F+  PDR+VV 
Sbjct: 64  IFGFLLKTGYF-----------ESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVT 112

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+ +I+ + Q G   +AV +F DM      PD F L  ++SAC+++G L L       + 
Sbjct: 113 WTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVM 172

Query: 358 RSHMDLSRAHVIAALVDMNAKC---GNMDRAAELFETMPNRDVVSYCSMIKG-LSIHGHG 413
           +S +DL    V  +LVDM AKC   G++D A ++F+ MP  +V+S+ ++I G +   G  
Sbjct: 173 KSGLDLDVC-VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCD 231

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           R+A+ LF  M+   + P+   F+ VL AC++   + D W      + VYA+V
Sbjct: 232 REAIELFLEMVQGQVKPNHFTFSSVLKACAN---LSDIW----LGEQVYALV 276



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+HS I+K G + +  +    IS+ +S    +  +  VFN + + N   W +++ G++++
Sbjct: 372 QIHSRILKSGFKSNLHICNALISM-YSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKH 430

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA-IHAAVIRWGVDEDVFV 173
                    F +++     P++ T+  V+ ACSHV  + EG     +  +  G+   +  
Sbjct: 431 GFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEH 490

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP 198
              ++DL G+   +  A ++ + MP
Sbjct: 491 YACVVDLLGRSGHLEEAMELVNSMP 515


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 302/544 (55%), Gaps = 17/544 (3%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +++K C+  T  +++H   +K G   D  + A  I L       ++ +  +F+ +   + 
Sbjct: 158 SVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVN-ARILFDEMPTRDM 216

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
             WN ++ GY Q+    E  T+   L       D  T   ++ AC+       G  IH+ 
Sbjct: 217 GSWNAMISGYCQSGNAKEALTLSDGL----RAMDSVTVVSLLSACTEAGDFNRGVTIHSY 272

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
            I+ G++ ++FV   LIDLY +   +   +KVFD M  R+++SW ++I  Y      + A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332

Query: 222 KTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMID 272
             +F  M     +   ++  +L   L ++G++R+ R +      +     ++     ++ 
Sbjct: 333 ILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVV 392

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDE 330
            YAK+G + SAR++F   P++DV++W+ +ISGYAQNG   EA+++++ M  +   +  ++
Sbjct: 393 MYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQ 452

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              VS++ ACSQ G L     +   L ++ + L    V  +L DM  KCG +D A  LF 
Sbjct: 453 GTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD-VFVGTSLADMYGKCGRLDDALSLFY 511

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            +P  + V + ++I     HGHG +AV LF  ML EG+ PD + F  +L+ACSH GLV++
Sbjct: 512 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 571

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G   FE MQ  Y I PS +HY CMVDL GR G L+ A   + SMP++P AS WGALL AC
Sbjct: 572 GEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSAC 631

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           +++ +++LG++ +  LFE+EP++ G +VLLSN+YA+A +W  V  +RS    +GLRK PG
Sbjct: 632 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPG 691

Query: 571 CSSL 574
            SS+
Sbjct: 692 WSSM 695



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 236/481 (49%), Gaps = 24/481 (4%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL-CHSLATPLSYSTAVFNRIVNPN 100
           TL + C        +H+ ++     Q+  + A  ++L C+     L+  T  F+ I N +
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYT--FDHIHNRD 116

Query: 101 TFLWNTLLKGYSQ---NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            + WN ++ GY +   +S  I  F++F  ++     PD  TFP V+KAC    +V +G  
Sbjct: 117 VYAWNLMISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACR---NVTDGNK 171

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH   +++G   DV+V  SLI LY +   +  AR +FDEMP R++ SW AMI GY   G+
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGN 231

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDG 273
             EA T+ D +    +V+  +L+    + GD      +         E  +     +ID 
Sbjct: 232 AKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YA+ G +   + +F+    RD+++W+++I  Y  N QP  A+ +F +M    +QPD   L
Sbjct: 292 YAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTL 351

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +SL S  SQ+G +     V  +  R    L    +  A+V M AK G +D A  +F  +P
Sbjct: 352 ISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEVAFTIVLTACSHVGLVEDG 451
           N+DV+S+ ++I G + +G   +A+ +++ M  EG  ++ ++  +  VL ACS  G +  G
Sbjct: 412 NKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQG 471

Query: 452 WRFFEAM--QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            +    +    +Y  V        + D+ G+ G L  A  L   +P   ++  W  L+ A
Sbjct: 472 MKLHGRLLKNGLYLDVFVG---TSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLI-A 526

Query: 510 C 510
           C
Sbjct: 527 C 527



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 161/371 (43%), Gaps = 53/371 (14%)

Query: 33  KPSCL--------LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           +P CL        LS L  I+ C+       V    ++KG   +   + + + + ++   
Sbjct: 345 QPDCLTLISLASILSQLGEIRACR------SVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE--EAVPDKYTFPLV 142
            +  + AVFN + N +   WNT++ GY+QN    E   ++  +  E  E   ++ T+  V
Sbjct: 399 LVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSV 458

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           + ACS   ++R+G  +H  +++ G+  DVFVGTSL D+YGK   +  A  +F ++P  N 
Sbjct: 459 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNS 518

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           V W  +I  +   G   +A  +F                           +++ DE  + 
Sbjct: 519 VPWNTLIACHGFHGHGEKAVMLF---------------------------KEMLDEGVKP 551

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFE-AAPDRDVVA----WSALISGYAQNGQPDEAVKI 317
           + +++ T++   +  G +      FE    D  +      +  ++  Y + GQ + A+  
Sbjct: 552 DHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNF 611

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
              M    +QPD  I  +L+SAC   GN+DL      +L     +    HV+  L +M A
Sbjct: 612 IKSM---PLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL--LSNMYA 666

Query: 378 KCGNMDRAAEL 388
             G  +   E+
Sbjct: 667 SAGKWEGVDEI 677



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 21/257 (8%)

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-D 320
           +NV     +++ Y  +G++  AR  F+   +RDV AW+ +ISGY + G   E ++ FS  
Sbjct: 84  QNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLF 143

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M S  +QPD     S++ AC  V +    N +   L+     +   +V A+L+ +  + G
Sbjct: 144 MLSSGLQPDYRTFPSVLKACRNVTD---GNKIHC-LALKFGFMWDVYVAASLIHLYCRYG 199

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVL 439
            +  A  LF+ MP RD+ S+ +MI G    G+ ++A++     LS+GL   D V    +L
Sbjct: 200 AVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALT-----LSDGLRAMDSVTVVSLL 254

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMP 495
           +AC+  G    G        + Y+I    E        ++DL    G LK   ++ + M 
Sbjct: 255 SACTEAGDFNRG-----VTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMY 309

Query: 496 VEPHASAWGALLGACKL 512
           V    S W +++ A +L
Sbjct: 310 VRDLIS-WNSIIKAYEL 325


>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 282/539 (52%), Gaps = 69/539 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIVNP 99
           L L+ KC     L Q H+ ++K GL   + +++  ++ C  S    LS++  +F  I +P
Sbjct: 9   LLLLHKCINMNQLKQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHP 68

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
              ++NT++K       F+    +F  + R    PD YT P V+KA + + ++  G +IH
Sbjct: 69  TICIFNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIH 128

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A  I+        +G+++ +  G                        +++V Y S     
Sbjct: 129 ACTIK--------LGSAVNEFVG-----------------------NSLLVMYRS----- 152

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                FD                     ++RSARQ+FDEMPE + VS+T MI GYA +GD
Sbjct: 153 -----FD---------------------NMRSARQVFDEMPELSAVSWTVMIYGYANMGD 186

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           + +AR LF+ A  +D   W A+ISGY QN    E + +F  M    V+PDE I+V+++SA
Sbjct: 187 VDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSA 246

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G LD   W+  YL R  + L+   V   L+DM AKCG++D A  LF  M  RD V 
Sbjct: 247 CAHMGALDTGIWIHRYLGRLGLPLT-LRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVC 305

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI G+++ G G  A+ LF  M   G+ PD + F  V  ACS+ G+V++G R +  M 
Sbjct: 306 WNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMS 365

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV----EPHASAWGALLGACKLYSD 515
            V+ I P  EHY C++DLL R G  + A  ++  +P        A AW A L AC  +  
Sbjct: 366 TVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQ 425

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            +  E+ A RLF+LE +++G+YVLLSN+YA   +  D   VR+ MK +G+ K+PGCSS+
Sbjct: 426 TQQAEVAAERLFQLE-RHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSI 483


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 293/529 (55%), Gaps = 14/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q HS IIKK L ++   V + +   ++    L  +  +F R+ + +   WNT++  Y Q+
Sbjct: 449 QFHSIIIKKKLAKN-LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQD 507

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F +F R+     V D       +KAC+HV  + +G  +H   ++ G+D D+  G
Sbjct: 508 ENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTG 567

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           +SLID+Y K   I  ARKVF  +PE +VVS  A+I GY S  +L EA  +F  M  R   
Sbjct: 568 SSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY-SQNNLEEAVVLFQEMLTRGVN 626

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMTSARS 285
            S +++  ++    K   L    Q   ++ +R   S       +++  Y     MT A +
Sbjct: 627 PSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACA 686

Query: 286 LF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
           LF E +  + +V W+ ++SG++QNG  +EA+K + +M    V PD+   V+++  CS + 
Sbjct: 687 LFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLS 746

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSM 403
           +L     + S +     DL        L+DM AKCG+M  ++++F+ M  R +VVS+ S+
Sbjct: 747 SLREGRAIHSLIFHLAHDLDEL-TSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSL 805

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + +G+   A+ +FD M    + PDE+ F  VLTACSH G V DG + FE M   Y 
Sbjct: 806 INGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYG 865

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I    +H ACMVDLLGR G+L+ A + + +  ++P A  W +LLGAC+++ D   GE+ A
Sbjct: 866 IEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISA 925

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L ELEPQN+ +YVLLSNIYA+   W     +R  M++RG++K+PG S
Sbjct: 926 EKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYS 974



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 228/469 (48%), Gaps = 24/469 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+  IK GL  +  + +  +S+ +S    +  +  VF  +   N   WN +++GY+ N 
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSM-YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +V  +F+ +       D +TF  ++  C+    +  G+  H+ +I+  + +++FVG 
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           +L+D+Y K   +  AR++F+ M +R+ V+W  +I  Y    +  EA  +F  M     VS
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS 527

Query: 236 WNALIGGLVK----IGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
             A +   +K    +  L   +Q+         +R++ + +++ID Y+K G +  AR +F
Sbjct: 528 DGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVF 587

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
            + P+  VV+ +ALI+GY+QN   +EAV +F +M ++ V P E    +++ AC +  +L 
Sbjct: 588 SSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLT 646

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKG 406
           L       +++        ++  +L+ M      M  A  LF  + + + +V +  M+ G
Sbjct: 647 LGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            S +G   +A+  +  M  +G+ PD+  F  VL  CS +  + +G       + +++++ 
Sbjct: 707 HSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG-------RAIHSLIF 759

Query: 467 SPEH------YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
              H         ++D+  + G +K + ++ + M    +  +W +L+  
Sbjct: 760 HLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLING 808



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 224/464 (48%), Gaps = 52/464 (11%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VHS  +  G++ +  L    + L ++    +SY+   F+  +  +   WN++L  YS   
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDL-YAKCAQVSYAEKQFD-FLEKDVTAWNSMLSMYSSIG 139

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           +  +V   FV L   +  P+K+TF +V+  C+   +V  G  IH ++I+ G++ + + G 
Sbjct: 140 KPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGG 199

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS--- 232
           +L+D+Y K   IS AR+VF+ + + N V WT +  GY   G   EA  VF+ M +     
Sbjct: 200 ALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRP 259

Query: 233 -NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
            ++++  +I   +++G L+ AR LF EM   +VV++  MI G+ K G  T          
Sbjct: 260 DHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETV--------- 310

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
                                 A++ F +M   +V+     L S++SA   V NLDL   
Sbjct: 311 ----------------------AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           V +   +  +  S  +V ++LV M +KC  M+ AA++FE +  ++ V + +MI+G + +G
Sbjct: 349 VHAEAIKLGL-ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM------QNVYAIV 465
              + + LF  M S G   D+  FT +L+ C+    +E G +F   +      +N++   
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFV-- 465

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                   +VD+  + G L+ A ++   M    + + W  ++G+
Sbjct: 466 -----GNALVDMYAKCGALEDARQIFERMCDRDNVT-WNTIIGS 503



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 175/359 (48%), Gaps = 10/359 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  + +P+   WN ++ G+ +          F  + +      + T   V+ A   V +
Sbjct: 283 LFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVAN 342

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA  I+ G+  +++VG+SL+ +Y K +++  A KVF+ + E+N V W AMI G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402

Query: 212 YASVGDLVEAKTVF-DLMPERSNV---SWNALIGGLVKIGDLRSARQ----LFDEMPERN 263
           YA  G+  +   +F D+     N+   ++ +L+       DL    Q    +  +   +N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +     ++D YAK G +  AR +FE   DRD V W+ +I  Y Q+    EA  +F  M  
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             +  D   L S + AC+ V  L     V     +  +D    H  ++L+DM +KCG + 
Sbjct: 523 CGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRD-LHTGSSLIDMYSKCGIIK 581

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
            A ++F ++P   VVS  ++I G S   +  +AV LF  ML+ G+ P E+ F  ++ AC
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYS-QNNLEEAVVLFQEMLTRGVNPSEITFATIVEAC 639



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 199/457 (43%), Gaps = 45/457 (9%)

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ-NSRFIEVFTIFVRLIREEAVPDKYTF 139
           S    LSYS  +  RI       +  +L  + Q + R +E+     +L +   V D+   
Sbjct: 18  SFVRRLSYSPDLGRRI-------YGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQ 70

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
            L        L++R G A+H+  +  G+D +  +G +++DLY K  ++S A K FD + E
Sbjct: 71  RLA-------LALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-E 122

Query: 200 RNVVSWTAMIVGYASVGD----LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255
           ++V +W +M+  Y+S+G     L    ++F+     +  +++ ++    +  ++   RQ+
Sbjct: 123 KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQI 182

Query: 256 FDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
              M     ERN      ++D YAK   ++ AR +FE   D + V W+ L SGY + G P
Sbjct: 183 HCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLP 242

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA- 370
           +EAV +F  M  +  +PD    V++++   ++G L      D+ L    M  S   V+A 
Sbjct: 243 EEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLK-----DARLLFGEM--SSPDVVAW 295

Query: 371 -ALVDMNAKCGNMDRAAELFETMPNRDVVS----YCSMIKGLSIHGHGRQAVSLFDRMLS 425
             ++  + K G    A E F  M    V S      S++  + I  +    + +    + 
Sbjct: 296 NVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIK 355

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
            GL  +    + +++  S    +E   + FEA++       +   +  M+      G   
Sbjct: 356 LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEE-----KNDVFWNAMIRGYAHNGESH 410

Query: 486 SAYELLNSMPVEPHA---SAWGALLGACKLYSDIELG 519
              EL   M    +      + +LL  C    D+E+G
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 447


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/526 (34%), Positives = 287/526 (54%), Gaps = 12/526 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ I+   +E D   V   +   ++    +S +   F +I N +   W +L+  Y Q  
Sbjct: 266 IHARIVSSNMESD--FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTC 323

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            + E   ++ R+  E    D  T+   + AC+ + +++EG AIH+ V   G  + + V T
Sbjct: 324 HYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGF-QSLVVHT 382

Query: 176 SLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLM---PER 231
           +L+ +Y K  E+  AR VF+ + + RNV  WTAMI  YA  G   EA  ++D M     R
Sbjct: 383 ALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTR 442

Query: 232 SN-VSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSL 286
            N  +++ ++      GDL +  ++   +       NV     ++  YAK G +  A+S 
Sbjct: 443 PNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSA 502

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FEA+  +D+V+W+A+I  YAQ+G   EA+ ++  M S+ V PDE  + S +SAC+  G+L
Sbjct: 503 FEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSL 562

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            L   + S + ++    S   V  ALV+M  +CG ++ A  +FE M  RDV+S+ +M   
Sbjct: 563 QLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSA 622

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            +  GH  Q + L+  M+  G+ P+E+ FT +L  CSH GL+  G   F  MQ+ + +VP
Sbjct: 623 YAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVP 682

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EH+ CMVDLLGR+G L+ A  L+ SMP +P + AW  +LG+CK +SD +  +  A R+
Sbjct: 683 IREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRV 742

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            EL+P+N   Y LLS+I+  A    +   V+  MKE GL+K PG S
Sbjct: 743 KELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQS 788



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 265/560 (47%), Gaps = 57/560 (10%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL-WNTLLKGYSQN 114
           VH H+++ G  ++  L    I + +     +  + A F    +      +N +L  Y +N
Sbjct: 64  VHRHLLRTGHGRNQFLGNLLIQM-YGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKN 122

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG--VDEDVF 172
             +     ++ R+  E   PDK T+ +V+ +CS V S+RE   IHA++I     + +++ 
Sbjct: 123 GLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLS 182

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP--- 229
           +  +L+++YGK   +  ARKVFD +  R+ VSWT+MI  YA+ G   EA  ++  M    
Sbjct: 183 LQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADG 242

Query: 230 -ERSNVSWNALIGGLVKIGDLRS--ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            +  ++++ + +    K+ D ++  AR +   M    V S   +I+ YA+ GD++SAR  
Sbjct: 243 IQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGS--ALINMYARCGDVSSARQA 300

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE   ++ VV W++L++ Y Q     EA+ ++  M  + V  D    V+ + AC+ +G L
Sbjct: 301 FEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGAL 360

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PNRDVVSYCSMIK 405
                + S +          H   AL+ M AKCG +D A  +F  +   R+V  + +MI 
Sbjct: 361 KEGKAIHSRVFECGFQSLVVHT--ALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMIS 418

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----- 460
             +  GH ++A+ L+D+M++EG  P+E  F+ VL ACS  G +E G +    ++N     
Sbjct: 419 AYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELAS 478

Query: 461 ----------VYAIVPSPE---------------HYACMVDLLGRTGHLKSA---YELLN 492
                     +YA   S E                +  M+    + G  + A   Y+ + 
Sbjct: 479 NVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMT 538

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL----LSNIYATAD 548
           S  V P      + L AC +   ++LG  + +R+  L+ Q+  S ++    L N+Y    
Sbjct: 539 SQGVLPDEVTIASSLSACAISGSLQLGREIHSRV--LKNQSFRSSLMVQTALVNMYGRCG 596

Query: 549 RWLDVCLVRSKMKERGLRKI 568
           R   +   RS  ++ G R +
Sbjct: 597 R---LETARSMFEDMGQRDV 613



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 199/425 (46%), Gaps = 49/425 (11%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  +++ C  + S+ EG  +H  ++R G   + F+G  LI +YG   EI  AR  F    
Sbjct: 45  YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104

Query: 199 E-RNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSAR 253
             + V  +  M+  Y   G    A  ++  M    PE   +++  ++G    +G LR AR
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164

Query: 254 QLFDEMPER------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
           ++   + E       N+     +++ Y K G +  AR +F+   +RD V+W+++IS YA 
Sbjct: 165 EIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYAN 224

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG  DEA+ ++  M +  +QPD     S + AC+++ +      + + +  S+M+     
Sbjct: 225 NGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESD--F 279

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V +AL++M A+CG++  A + FE + N+ VV + S++       H R+A+ L+ RM  EG
Sbjct: 280 VGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEG 339

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGW----RFFE-----------------------AMQN 460
           +  D V +   L AC+ +G +++G     R FE                       A + 
Sbjct: 340 VHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARA 399

Query: 461 VYAIVPSPEHYAC---MVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALLGACKLYS 514
           V+  V    +  C   M+    + GH + A EL + M  E   P+   +  +L AC    
Sbjct: 400 VFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSG 459

Query: 515 DIELG 519
           D+E G
Sbjct: 460 DLEAG 464


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/532 (34%), Positives = 301/532 (56%), Gaps = 21/532 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  +++ G +Q  S+    I++ +  A  ++Y+  +F ++   +   WNT++ G +++
Sbjct: 318 QIHGAVVRFGWDQFVSVANSAINM-YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARS 376

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE----GTAIHAAVIRWGVDED 170
                   +F+ L+R   +PD++T   V++ACS   S+ E    G  +H   ++ G+  D
Sbjct: 377 GLEECSLRLFIDLLRSGLLPDQFTITSVLRACS---SLEESYCVGRQVHTCALKAGIVLD 433

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            FV T+LID+Y K  ++  A  +F      ++ SW AM+ G+    +  EA  +F LM E
Sbjct: 434 SFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 231 R---------SNVSWNALIGGLVKIGDLRSARQLFDEMP-ERNVVSYTTMIDGYAKVGDM 280
           R         +N +  A  G LV++   +    +  +M    ++   + ++D Y K G+M
Sbjct: 494 RGEKADQITFANAAKAA--GCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEM 551

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            SAR +F   P  D VAW+ +ISG  +NG+ ++A+  +  M    VQPDE+   +L+ AC
Sbjct: 552 KSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKAC 611

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           S +  L+    + + + + +       V+ +LVDM AKCGN++ A  LF  M  R V  +
Sbjct: 612 SLLTALEQGKQIHANIMKLNCAFD-PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALW 670

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI GL+ HG+  +A++ F+ M S G+TPD V F  VL+ACSH GL  D ++ F++MQ 
Sbjct: 671 NAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQK 730

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            Y + P  EHY+C+VD L R GH++ A ++++SMP E  A+ +  LL AC++  D E GE
Sbjct: 731 TYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGE 790

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            VA +LF ++P ++ +YVLLSNIYA A++W +    R+ MK   ++K PG S
Sbjct: 791 RVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFS 842



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 181/405 (44%), Gaps = 45/405 (11%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT----FLWNTLLKG 110
           + H+ I+  GL  D  +  + I++     +  S +  +F+  + P +      +N +L  
Sbjct: 34  RTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS-ARKLFD--ITPQSDRDLVTYNAILAA 90

Query: 111 YSQNSRFIEV------FTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           Y+      +V      F IF RL+R+   +  ++T   + K C    S     A+    +
Sbjct: 91  YAHTGELHDVEKTHEAFHIF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAV 149

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G+  DVFV  +L+++Y K + I  AR +FD MP R+VV W  M+  Y  +G   E   
Sbjct: 150 KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLG 209

Query: 224 VFDLMPERSN-----VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           +F     RS      VS   ++ G+ K       + +F+   E+ V +Y T         
Sbjct: 210 LFSAF-HRSGLRPDCVSVRTILMGVGK-------KTVFERELEQ-VRAYAT--------- 251

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
                  LF    D DV  W+  +S Y Q G+  EAV  F DM    V  D    + ++S
Sbjct: 252 ------KLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILS 305

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
             + + +L+L   +   + R   D     V  + ++M  K G+++ A  +F  M   D++
Sbjct: 306 VVASLNHLELGKQIHGAVVRFGWD-QFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLI 364

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           S+ ++I G +  G    ++ LF  +L  GL PD+   T VL ACS
Sbjct: 365 SWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS 409



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 156/383 (40%), Gaps = 68/383 (17%)

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGY 212
           G   HA ++  G++ D +V  +LI +Y K   +  ARK+FD  P+  R++V++ A++  Y
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 213 ASVGDLV------EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP------ 260
           A  G+L       EA  +F L+ +   ++    +  L K+  L  +    + +       
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 261 --ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             + +V     +++ YAK   +  AR LF+  P RDVV W+ ++  Y + G  DE + +F
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
           S      ++PD    VS+ +    VG           +    ++  RA+           
Sbjct: 212 SAFHRSGLRPD---CVSVRTILMGVGK--------KTVFERELEQVRAY----------- 249

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
                 A +LF    + DV  +   +      G G +AV  F  M+   +  D + + ++
Sbjct: 250 ------ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVI 303

Query: 439 LTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           L+  +           H  +V  GW  F ++ N              +++  + G +  A
Sbjct: 304 LSVVASLNHLELGKQIHGAVVRFGWDQFVSVAN------------SAINMYVKAGSVNYA 351

Query: 488 YELLNSMPVEPHASAWGALLGAC 510
             +   M  E    +W  ++  C
Sbjct: 352 RRMFGQMK-EVDLISWNTVISGC 373


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/542 (34%), Positives = 296/542 (54%), Gaps = 13/542 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           ++K C       ++H    K G + +  + A  I + +S       + ++F+ +   +  
Sbjct: 224 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHM-YSRFGFTGIARSLFDDMPFRDMG 282

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++ G  QN    +   +   +  E    +  T   ++  C  +  +     IH  V
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I+ G++ D+FV  +LI++Y K   +  ARK F +M   +VVSW ++I  Y    D V A 
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 223 TVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDG 273
             F  M     +   ++  +L   + +  D +++R +   +  R     +VV    ++D 
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFI 332
           YAK+G + SA  +FE  P +DV++W+ LI+GYAQNG   EA++++  M   K + P++  
Sbjct: 463 YAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGT 522

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
            VS++ A + VG L     +   + ++++ L    V   L+D+  KCG +  A  LF  +
Sbjct: 523 WVSILPAYAHVGALQQGMKIHGRVIKTNLHLD-VFVATCLIDVYGKCGRLVDAMSLFYQV 581

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P    V++ ++I    IHGH  + + LF  ML EG+ PD V F  +L+ACSH G VE+G 
Sbjct: 582 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 641

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
             F  MQ  Y I PS +HY CMVDLLGR G+L+ AY+ +  MP++P AS WGALLGAC++
Sbjct: 642 WCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRI 700

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +IELG+  ++RLFE++ +N G YVLLSNIYA   +W  V  VRS  +ERGL+K PG S
Sbjct: 701 HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 760

Query: 573 SL 574
           ++
Sbjct: 761 TI 762



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 237/478 (49%), Gaps = 28/478 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ ++  G  Q   +    ++L  +L   +S S   F++I   + + WN+++  Y  N 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGD-VSLSRCTFDQIPQKDVYAWNSMISAYVHNG 196

Query: 116 RFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            F E    F +L+   E  PD YTFP V+KAC    ++ +G  IH    + G   +VFV 
Sbjct: 197 HFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFKLGFQWNVFVA 253

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            SLI +Y +      AR +FD+MP R++ SW AMI G    G+  +A  V D M     +
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 231 RSNVSWNALIGGLVKIGDLRSAR----QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            + V+  +++    ++GD+ +A      +     E ++     +I+ YAK G++  AR  
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+     DVV+W+++I+ Y QN  P  A   F  M     QPD   LVSL S  +Q  + 
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             S  V  ++ R    +    +  A+VDM AK G +D A ++FE +P +DV+S+ ++I G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITG 493

Query: 407 LSIHGHGRQAVSLFDRMLSE--GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            + +G   +A+ ++ +M+ E   + P++  +  +L A +HVG ++ G      M+    +
Sbjct: 494 YAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQG------MKIHGRV 546

Query: 465 VPSPEHY-----ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           + +  H       C++D+ G+ G L  A  L   +P E   + W A++    ++   E
Sbjct: 547 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAE 603



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 134/283 (47%), Gaps = 12/283 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S  +++ + +   +   VH  I+++G   +  ++ + +   ++    L  +  
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE--EAVPDKYTFPLVIKACSHV 149
           VF  I   +   WNTL+ GY+QN    E   ++ +++ E  E +P++ T+  ++ A +HV
Sbjct: 475 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++++G  IH  VI+  +  DVFV T LID+YGK   +  A  +F ++P+ + V+W A+I
Sbjct: 534 GALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
             +   G   +   +F  M +      +V++ +L+      G +   +  F  M E  + 
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIK 653

Query: 265 ---VSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
                Y  M+D   + G +  A    +  P   D   W AL+ 
Sbjct: 654 PSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLG 696


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/568 (33%), Positives = 294/568 (51%), Gaps = 41/568 (7%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           + FP  +   S L  +K  ++      VH+H++K   + D  +    + + +   + L +
Sbjct: 55  LTFPSVAKACSKLLNLKYSQI------VHTHVVKSRFQADLFVQTSVVDM-YVKCSQLGF 107

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           +  +F+R+   +   WN+++ G++Q      V ++F  +  E    D  T   +  +   
Sbjct: 108 AYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALS 167

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWT 206
           +  ++   +IH+  I+ G+D DV V  + I  Y K  E   A  VFD + +  +  VSW 
Sbjct: 168 LKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWN 227

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE----- 261
           +MI GYA      +A   F  M          L GG         +       PE     
Sbjct: 228 SMIAGYAHFEQCSKAVGFFKKM----------LXGGFRADLSTILSLLSSCVQPEVLFHG 277

Query: 262 -------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
                         ++    T+I  Y+K GD+ SAR LF+    +  V+W+A+I+G A+ 
Sbjct: 278 KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEK 337

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G  DEA+ +FS M +   +PD   ++SLMS C Q G L+L  W+D+Y + + +      V
Sbjct: 338 GDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLK-DNLMV 396

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             AL+D+ AKCG+MD A ELF TMP + +VS+ ++I G +++G  ++A+ LF +M+  GL
Sbjct: 397 CNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGL 456

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P+ + F  VL AC+H G +E GW  F  M  VY I P  +HY+CM DLLGR G LK A+
Sbjct: 457 KPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAF 516

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E + +MP +P    W  LL ACK++ ++ +GE VA  LFELEPQ A  YV ++NIYA+A 
Sbjct: 517 EFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAG 576

Query: 549 RWLDVCLVRSKMKERGLRKIPG---CSS 573
           +W  V  +R+ MK     K  G   CSS
Sbjct: 577 KWDRVAAIRTMMKCNKAMKSSGEKPCSS 604



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 209/440 (47%), Gaps = 14/440 (3%)

Query: 89  STAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
           +T  FNR  N  T   WN+ +          +   +F ++ +    P+  TFP V KACS
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +L+++    +H  V++     D+FV TS++D+Y K  ++  A  +F  MP R+V SW +
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNS 125

Query: 208 MIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQL----FDEM 259
           MI G+A +G +    ++F  M        +V+   L    + + DL+    +        
Sbjct: 126 MIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG 185

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKI 317
            + +V    T I  YAK G+   A ++F+      +  V+W+++I+GYA   Q  +AV  
Sbjct: 186 IDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGF 245

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M     + D   ++SL+S+C Q   L     + ++  +   D S   VI  L+ M +
Sbjct: 246 FKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCD-SDIQVINTLISMYS 304

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG++  A  LF+ M  +  VS+ +MI G +  G   +A++LF  M + G  PD V    
Sbjct: 305 KCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIIS 364

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           +++ C   G +E G ++ +       +  +      ++D+  + G + +A EL  +MP E
Sbjct: 365 LMSGCGQTGALELG-KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-E 422

Query: 498 PHASAWGALLGACKLYSDIE 517
               +W  L+  C L  + +
Sbjct: 423 KSLVSWTTLIAGCALNGEFK 442


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 263/484 (54%), Gaps = 59/484 (12%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
           +VF+ +   NT  WN+LL G S++ SR +E   +F      + +P+  TF   I      
Sbjct: 82  SVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLF------DEIPEPDTFSYNI------ 129

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
                                      ++  Y +      A+  F+ MP ++  SW  MI
Sbjct: 130 ---------------------------MLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMI 162

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
            GYA  G++ +A+ +F  M E++ VSWNA+I G ++ GDL  A   F   P R VV++T 
Sbjct: 163 TGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTA 222

Query: 270 MIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           MI GY K   +  A ++F +    +++V W+A+ISGY +N +P++ +K+F  M  + ++P
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +   L S +  CS++  L L   +              H I     M  KCG +  A +L
Sbjct: 283 NSSGLSSALLGCSELSALCLGRQI--------------HQIV----MYCKCGELGDAWKL 324

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE M  +DVV++ +MI G + HG+  +A+ LF  M      PD + F  VL AC+H GLV
Sbjct: 325 FEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLV 384

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           + G  +F++M   Y + P P+HY CMVDLLGR G ++ A +L+ SMP  PHA+ +G LLG
Sbjct: 385 DIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLG 444

Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           AC+++ ++EL E  A +L EL+P+NA  YV L+NIYA+ + W DV  VR +MKE  + K+
Sbjct: 445 ACRVHKNVELAEFAAEKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKV 504

Query: 569 PGCS 572
           PG S
Sbjct: 505 PGYS 508


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/590 (31%), Positives = 309/590 (52%), Gaps = 62/590 (10%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           +L++ C+      QVH+H +K G    H  V   +   +     L  +  VF ++   N 
Sbjct: 67  SLLESCRTLNLGKQVHAHTLKTGF-HGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNL 125

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
           + W  +L  +  +  F E  ++F +L  ++   + + FP+V+K C  +  +  G  +H  
Sbjct: 126 YSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGV 185

Query: 162 VIRWGVDE----DVFVGTSLIDL---------YGKRKEISCARKVFDEMP--ERNVVSWT 206
           VI+   D      +F G S+ ++         Y +   +  A+++FD+M    ++ +SW 
Sbjct: 186 VIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWN 245

Query: 207 AMIVGYASVGDLVEAKTVF-DLMPERS--------------------------------- 232
           +MI GYA      EA ++F DL+ E                                   
Sbjct: 246 SMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVV 305

Query: 233 -NVSWNALIGGLV-----KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
             + WN  +GG +     K  DL++A+  FD + ER+  ++  +I GYA    + + ++L
Sbjct: 306 RGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNL 365

Query: 287 FEAAP----DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            +       + +V  W+ +ISG+ +NG  + A+++F++M + +++PD + +  ++ AC++
Sbjct: 366 IQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACAR 425

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +  +     V ++  R   +L   H+ AALVDM AKCG++  A +++  + N ++VS  +
Sbjct: 426 LATIARGKQVHAHSIRQGYELD-VHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNA 484

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           M+   ++HGHG + ++LF  ML  G  PD V F  VL++C H G VE G  FF+ M   Y
Sbjct: 485 MLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLM-TYY 543

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            + PS +HY C+VDLL R G L  AYEL+  +P +P +  WGALLG C ++ ++ELGE+ 
Sbjct: 544 NVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIA 603

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A  L ELEP N G+YVLL+N+YA A RW D+   R  +K+RG+ K PGCS
Sbjct: 604 AESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCS 653



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 207/446 (46%), Gaps = 69/446 (15%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D  T+  ++++C    ++  G  +HA  ++ G     FV T L+ +YG+   +  A  VF
Sbjct: 61  DSSTYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVF 117

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN--------ALIGGL--V 244
            +MP+RN+ SWTA++  +   G   EA ++F+ + +  ++            L GGL  +
Sbjct: 118 VKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKL-QLDDIGLEFFVFPVVLKLCGGLRVL 176

Query: 245 KIG------------DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP- 291
           ++G            D+ SA ++F     +NVVSY TMI GY + G++  A+ LF+    
Sbjct: 177 ELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMEL 236

Query: 292 -DRDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLS 349
             +D ++W+++ISGYA N   DEA+ +F D+   + ++ D F L S+++AC+ + +L   
Sbjct: 237 VGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRG 296

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             V +      +  +   V  ALV+M +KC ++  A   F+ +  RD  ++  +I G + 
Sbjct: 297 KEVHAQAVVRGLHWN-TFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYAC 355

Query: 410 -----------------------------------HGHGRQAVSLFDRMLSEGLTPDEVA 434
                                              +GH   A+ LF  M +  L PD   
Sbjct: 356 CNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYT 415

Query: 435 FTIVLTACSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
             I+L AC+ +  +  G +    +++  Y +       A +VD+  + G +K A ++ N 
Sbjct: 416 VGIILPACARLATIARGKQVHAHSIRQGYEL--DVHIGAALVDMYAKCGSIKHAMQVYNR 473

Query: 494 MPVEPHASAWGALLGACKLYSDIELG 519
           +   P+  +  A+L A  ++   + G
Sbjct: 474 IS-NPNLVSQNAMLTAYAMHGHGDEG 498


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/543 (33%), Positives = 302/543 (55%), Gaps = 9/543 (1%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
           L++AL   +    +    ++H+ I+K     D   VA+ +   H     +SY+  +F+ +
Sbjct: 115 LVAALQACEDSSFKKLGMEIHAAILKSNQVLD-VYVANALVAMHVRFGKMSYAARIFDEL 173

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
              +   WN+++ G++QN  + E    F  L      PD+ +   ++ A   +  +  G 
Sbjct: 174 DEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGK 233

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IHA  ++  +D ++ +G +LID+Y K   ++ A  VFD+M  ++++SWT +I  YA   
Sbjct: 234 EIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNN 293

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGG-LVKIGDLRS---ARQLFDEMPER---NVVSYTT 269
              EA  +   +  +       +IG  L+    LR    A+++     +R   +++    
Sbjct: 294 CHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNM 353

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID YA  G++  A  +FE+   +DVV+W+++IS Y  NG  +EA+ +F  M   +V+PD
Sbjct: 354 IIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPD 413

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              LVS++SA + +  L+    +  ++ R    L     + +LVDM A CG+++ A ++F
Sbjct: 414 SITLVSILSAAASLSALNKGKEIHGFIFRKGFML-EGSTVNSLVDMYACCGSLENAYKVF 472

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
               ++ +V + +MI    +HG G+ AV LF  M  + L PD + F  +L ACSH GL+ 
Sbjct: 473 ICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLIN 532

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G R  E M+  Y + P PEHYAC+VDLLGR  HL+ AY  + SM +EP A  W A LGA
Sbjct: 533 EGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGA 592

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+++S+ +LGE+ A +L +L+P + GSYVL+SN++A + RW DV  VR +MK  GL+K P
Sbjct: 593 CRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNP 652

Query: 570 GCS 572
           GCS
Sbjct: 653 GCS 655



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 178/328 (54%), Gaps = 15/328 (4%)

Query: 128 IREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           +R   VP D +TFP V+KAC  V  +  G  IH  +I+ G D  VFV  SL+ +Y K  +
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 187 ISCARKVFDEMPERN-VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN--ALIGGL 243
           I  ARK+FD M ERN VVSW ++I  Y+  G  +EA  +F  M +++ V  N   L+  L
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREM-QKAGVGANTYTLVAAL 119

Query: 244 VKIGDLRSARQLFDEMPER--------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
               D  S ++L  E+           +V     ++  + + G M+ A  +F+   ++D 
Sbjct: 120 QACED-SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDN 178

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           + W+++I+G+ QNG  +EA++ F  +   N++PDE  L+S+++A  ++G L     + +Y
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAY 238

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
             ++ +D S   +   L+DM +KC  +  A  +F+ M N+D++S+ ++I   + +    +
Sbjct: 239 AMKNWLD-SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTE 297

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           A+ L  ++ ++G+  D +     L ACS
Sbjct: 298 ALKLLRKVQTKGMDVDTMMIGSTLLACS 325



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/540 (24%), Positives = 253/540 (46%), Gaps = 57/540 (10%)

Query: 43  LIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           ++K C +   +H   ++H  IIK G +    +    +S+ ++    +  +  +F+R+   
Sbjct: 16  VLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSM-YAKCNDILGARKLFDRMNER 74

Query: 100 NTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           N  + WN+++  YS N + +E   +F  + +     + YT    ++AC      + G  I
Sbjct: 75  NDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEI 134

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HAA+++     DV+V  +L+ ++ +  ++S A ++FDE+ E++ ++W +MI G+   G  
Sbjct: 135 HAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLY 194

Query: 219 VEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYT 268
            EA   F      +L P+   VS  +++    ++G L + +++         + N+    
Sbjct: 195 NEALQFFCGLQDANLKPDE--VSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGN 252

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           T+ID Y+K   +  A  +F+   ++D+++W+ +I+ YAQN    EA+K+   + +K +  
Sbjct: 253 TLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDV 312

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           D  ++ S + ACS +  L  +  V  Y L R   DL   ++I   +D+ A CGN++ A  
Sbjct: 313 DTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMI---IDVYADCGNINYATR 369

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV--------- 438
           +FE++  +DVVS+ SMI     +G   +A+ +F  M    + PD +    +         
Sbjct: 370 MFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSA 429

Query: 439 ----------------LTACSHVGLVEDGWRFFEAMQNVYAIV-----PSPEHYACMVDL 477
                           +   S V  + D +    +++N Y +       S   +  M++ 
Sbjct: 430 LNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINA 489

Query: 478 LGRTGHLKSAYELLNSMPVE---PHASAWGALLGACKLYSDIELGELVANRL---FELEP 531
            G  G  K+A EL + M  +   P    + ALL AC     I  G+ +   +   ++LEP
Sbjct: 490 YGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEP 549


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 299/596 (50%), Gaps = 80/596 (13%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q H+ I+K G + D  + A  I+  +S     + +  +   I +P  + +++L+   ++ 
Sbjct: 36  QAHARILKSGAQNDGYISAKLIA-SYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F +   +F R+     +PD +  P + K C+ + + + G  IH      G+D D FV 
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 175 TSLIDLYGKRKEISCARKVFDEMPER---------------------------------- 200
            SL  +Y +   +  ARKVFD M E+                                  
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 201 -NVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVS------------------ 235
            N+VSW  ++ G+   G   EA  +F  M      P++  VS                  
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 236 ---------------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                           +A++    K G +    +LFDE            I G ++ G +
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 281 TSARSLF----EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
             A  +F    E   + +VV+W+++I+G AQNG+  EA+++F +M    V+P+   + S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC  +  L        +  R H+ L   HV +AL+DM AKCG +  +  +F  MP ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHL-LDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKN 453

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           +V + S++ G S+HG  ++ +S+F+ ++   L PD ++FT +L+AC  VGL ++GW++F 
Sbjct: 454 LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFN 513

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M   Y I P  EHY+CMV+LLGR G L+ AY+L+  +P EP +  WGALL +C+L +++
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNV 573

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +L E+ A +LF LEP+N G+YVL+SNIYA    W +V  +R+KM+  GL+K PGCS
Sbjct: 574 DLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 180/546 (32%), Positives = 294/546 (53%), Gaps = 20/546 (3%)

Query: 41  LTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFN 94
           ++L+K C     L Q   VH+ + + GL+ +  +    +S+   C S+   L     VFN
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALE----VFN 365

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            +   N   W  ++ G++Q+ R  E F  F ++I     P++ TF  ++ ACS   ++++
Sbjct: 366 LVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQ 425

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH  +I+ G   D  V T+L+ +Y K   +  AR VF+ + ++NVV+W AMI  Y  
Sbjct: 426 GRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQ 485

Query: 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------ERNVVS 266
                 A   F  + +      ++    ++ +     A +L   +         E ++  
Sbjct: 486 HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
              ++  +   GD+ SA +LF   P+RD+V+W+ +I+G+ Q+G+   A   F  M    V
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGV 605

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           +PD+     L++AC+    L     + + ++ + +D     V   L+ M  KCG++D A 
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVV-VGTGLISMYTKCGSIDDAH 664

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +F  +P ++V S+ SMI G + HG G++A+ LF +M  EG+ PD + F   L+AC+H G
Sbjct: 665 LVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAG 724

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           L+++G   FE+M++ + I P  EHY CMVDL GR G L  A E +N M V+P +  WGAL
Sbjct: 725 LIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGAL 783

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGAC+++ D+EL E VA +  EL+P + G YV+LSNIYA A  W +V  +R  M +RG+ 
Sbjct: 784 LGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVV 843

Query: 567 KIPGCS 572
           K PG S
Sbjct: 844 KKPGQS 849



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 244/480 (50%), Gaps = 14/480 (2%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L L  K K      ++H+HI    ++ D  +    IS+ ++     + +  +F+ + +
Sbjct: 109 SLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISM-YAKCGNTNSAKQIFDEMPD 167

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            + + WN LL GY Q+ R+ E F +  +++++   PDKYTF  ++ AC+   +V +G  +
Sbjct: 168 KDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGEL 227

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            + ++  G D D+FVGT+LI+++ K   +  A KVF+ +P R++++WT+MI G A     
Sbjct: 228 FSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQF 287

Query: 219 VEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTM 270
            +A  +F +M E       V++ +L+        L   +++   M E      +   T +
Sbjct: 288 KQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTAL 347

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +  Y K G M  A  +F     R+VV+W+A+I+G+AQ+G+ +EA   F+ M    ++P+ 
Sbjct: 348 LSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNR 407

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
              +S++ ACS+   L     +   + ++   ++   V  AL+ M AKCG++  A  +FE
Sbjct: 408 VTFMSILGACSRPSALKQGRQIHDRIIKAGY-ITDDRVRTALLSMYAKCGSLMDARNVFE 466

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            +  ++VV++ +MI     H     AV+ F  +L EG+ PD   FT +L  C     +E 
Sbjct: 467 RISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALEL 526

Query: 451 GWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           G ++ +++  + A   S  H    +V +    G L SA  L N MP E    +W  ++  
Sbjct: 527 G-KWVQSLI-IRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAG 583



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 206/432 (47%), Gaps = 12/432 (2%)

Query: 87  SYSTAVFNRIVN-PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           SYS    N  V+  NT   N  L   S+  +  E   + + +        + T+  +++ 
Sbjct: 54  SYSKGQGNEFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQL 113

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C    ++ +G  IH  +    +  D+F+   LI +Y K    + A+++FDEMP+++V SW
Sbjct: 114 CIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSW 173

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP- 260
             ++ GY       EA  + + M +        ++  ++       ++    +LF  +  
Sbjct: 174 NLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILN 233

Query: 261 ---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
              + ++   T +I+ + K G +  A  +F   P RD++ W+++I+G A++ Q  +A  +
Sbjct: 234 AGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNL 293

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M  + VQPD+   VSL+ AC+    L+    V + +    +D +  +V  AL+ M  
Sbjct: 294 FQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD-TEIYVGTALLSMYT 352

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG+M+ A E+F  +  R+VVS+ +MI G + HG   +A   F++M+  G+ P+ V F  
Sbjct: 353 KCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMS 412

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           +L ACS    ++ G +  + +     I       A ++ +  + G L  A  +   +  +
Sbjct: 413 ILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLMDARNVFERIS-K 470

Query: 498 PHASAWGALLGA 509
            +  AW A++ A
Sbjct: 471 QNVVAWNAMITA 482


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 306/534 (57%), Gaps = 25/534 (4%)

Query: 55   QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            Q+H  +++ GL+Q  S+    I++ +  A  +S + +VF ++   +   WNT++ G + +
Sbjct: 956  QIHGIVMRSGLDQVVSVGNCLINM-YVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 115  SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG-----TAIHAAVIRWGVDE 169
                    +FV L+R+  +PD++T   V++ACS +    EG     T IHA  ++ GV  
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVL 1070

Query: 170  DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
            D FV T+LID+Y KR ++  A  +F      ++ SW A++ GY   GD  +A  ++ LM 
Sbjct: 1071 DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130

Query: 230  E---RSN----VSWNALIGGLVKIGDLRSARQLFDEMPER--NVVSYTT--MIDGYAKVG 278
            E   RS+    V+     GGLV    L+  +Q+   + +R  N+  + T  ++D Y K G
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLV---GLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCG 1187

Query: 279  DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            +M SAR +F   P  D VAW+ +ISG  +NGQ + A+  +  M    VQPDE+   +L+ 
Sbjct: 1188 EMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVK 1247

Query: 339  ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
            ACS +  L+    + + + + +       V+ +LVDM AKCGN++ A  LF+    R + 
Sbjct: 1248 ACSLLTALEQGRQIHANIVKLNCAFD-PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIA 1306

Query: 399  SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
            S+ +MI GL+ HG+ ++A+  F  M S G+ PD V F  VL+ACSH GLV + +  F +M
Sbjct: 1307 SWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSM 1366

Query: 459  QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
            Q  Y I P  EHY+C+VD L R G ++ A ++++SMP E  AS +  LL AC++  D E 
Sbjct: 1367 QKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRET 1426

Query: 519  GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            G+ VA +L  LEP ++ +YVLLSN+YA A++W +V   R+ M++  ++K PG S
Sbjct: 1427 GKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFS 1480



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 191/420 (45%), Gaps = 18/420 (4%)

Query: 100  NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            +  +WN  L  + Q     E    FV +I      D  TF +++   + +  +  G  IH
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 160  AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG-------Y 212
              V+R G+D+ V VG  LI++Y K   +S AR VF +M E +++SW  MI G        
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 213  ASVGDLVEAKTVFDLMPERSNV-----SWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
             SVG  V       L+P++  V     + ++L GG      + +       + +  V   
Sbjct: 1019 CSVGMFVHLLRD-SLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVS-- 1075

Query: 268  TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            T +ID Y+K G M  A  LF      D+ +W+A++ GY  +G   +A++++  M     +
Sbjct: 1076 TALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGER 1135

Query: 328  PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
             D+  LV+   A   +  L     + + + +   +L    V + ++DM  KCG M+ A  
Sbjct: 1136 SDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLD-LFVTSGVLDMYLKCGEMESARR 1194

Query: 388  LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
            +F  +P+ D V++ +MI G   +G    A+  + +M    + PDE  F  ++ ACS +  
Sbjct: 1195 VFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTA 1254

Query: 448  VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            +E G +    +  +      P     +VD+  + G+++ A  L         AS W A++
Sbjct: 1255 LEQGRQIHANIVKLNCAF-DPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIAS-WNAMI 1312



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 155/374 (41%), Gaps = 86/374 (22%)

Query: 155  GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGY 212
            G   HA ++  G   D FV  +LI +Y K   +S ARK+FD  P+  R++V+W A++   
Sbjct: 675  GKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSAL 734

Query: 213  ASVGDL--------------VEAKTVFDLMP---------------------ERSNVSWN 237
            A+  D               V + T   L P                      +  + W+
Sbjct: 735  AAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWD 794

Query: 238  ALIGGLV-----KIGDLRSARQLFDEMPERNVVSYTTMIDGYA----------------K 276
              + G +     K G +R AR LFD M  R+VV +  M+  Y                 +
Sbjct: 795  VFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHR 854

Query: 277  VG---DMTSARSL---------------FEAAPDR---------DVVAWSALISGYAQNG 309
             G   D  + R+L               F+A   +         DV+ W+  +S + Q G
Sbjct: 855  TGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRG 914

Query: 310  QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
            +  EAV  F DM +  V  D    V +++  + +  L+L   +   + RS +D     V 
Sbjct: 915  EAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLD-QVVSVG 973

Query: 370  AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
              L++M  K G++ RA  +F  M   D++S+ +MI G ++ G    +V +F  +L + L 
Sbjct: 974  NCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLL 1033

Query: 430  PDEVAFTIVLTACS 443
            PD+     VL ACS
Sbjct: 1034 PDQFTVASVLRACS 1047



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 108/523 (20%), Positives = 209/523 (39%), Gaps = 85/523 (16%)

Query: 56   VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
            +H + +K GL+ D  +    +++       +  +  +F+ +   +  LWN ++K Y    
Sbjct: 782  LHGYAVKIGLQWDVFVAGALVNIYAKFGL-IREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 116  RFIEVFTIFVRLIREEAVPDKY---TFPLVIKACSHVLSVREGTAIHAAVIRWGVD-EDV 171
               E   +F    R    PD     T   V+K   ++L +++  A    +  +  D  DV
Sbjct: 841  LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDV 900

Query: 172  FVGTSLIDLYGKRKEISCARKVFDEMPERNV----VSWTAMIVGYASVGDLVEAKTVFDL 227
             V    +  + +R E   A   F +M    V    +++  M+   A +  L   K +  +
Sbjct: 901  IVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGI 960

Query: 228  MPERSNVSW-----NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
            +  RS +       N LI   VK G +  AR +F +M E +++S                
Sbjct: 961  VM-RSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLIS---------------- 1003

Query: 283  ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
                           W+ +ISG   +G  + +V +F  +   ++ PD+F + S++ ACS 
Sbjct: 1004 ---------------WNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSS 1048

Query: 343  V-GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            + G   L+  + +   ++ + L  + V  AL+D+ +K G M+ A  LF      D+ S+ 
Sbjct: 1049 LEGGYYLATQIHACAMKAGVVLD-SFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWN 1107

Query: 402  SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVED 450
            +++ G  + G   +A+ L+  M   G   D++       A             H  +V+ 
Sbjct: 1108 AIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKR 1167

Query: 451  GWRF-----------------FEAMQNVYAIVPSPEHYA-------CMVDLLGRTGHLKS 486
            G+                    E+ + V++ +PSP+  A       C+ +  G+  H   
Sbjct: 1168 GFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVEN--GQEEHALF 1225

Query: 487  AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
             Y  +    V+P    +  L+ AC L + +E G  +   + +L
Sbjct: 1226 TYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKL 1268



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 7/212 (3%)

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSL 286
           +P+  ++   A+    + +G    AR L     P+R V +   +I  YAK G ++SAR L
Sbjct: 656 LPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTN--NLITMYAKCGSLSSARKL 713

Query: 287 FEAAPD--RDVVAWSALISGYAQNG-QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           F+  PD  RD+V W+A++S  A +  +  +   +F  +    V      L  +   C   
Sbjct: 714 FDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLS 773

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            +   S  +  Y  +  +      V  ALV++ AK G +  A  LF+ M  RDVV +  M
Sbjct: 774 ASPSASESLHGYAVKIGLQWD-VFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVM 832

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
           +K         +A+ LF      G  PD+V  
Sbjct: 833 MKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 249/407 (61%), Gaps = 6/407 (1%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + D+F    ++  Y + +++  AR +F+ MPER++VSW AM+ GYA  G + EA+ +F  
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYK 82

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           MP ++ +SWN L+   V+ G +  A++LF+   +  +VS+  ++ G+ +       R+LF
Sbjct: 83  MPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVR-----KRRNLF 137

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P RD ++WSA+I+GY+QNG  +EA+  F +M     + +       +S CS +  L+
Sbjct: 138 DNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALE 197

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L   +   L ++    +  +V  AL+ M  KCG++D A + F+ +  +DVVS+ +MI G 
Sbjct: 198 LGRQLHCRLVKAGYQ-TGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGY 256

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           + HG G +A+++F+ M + G+ PD+     VL ACSH GLV+ G  +F +M   Y I   
Sbjct: 257 ARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAK 316

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
             HY CMVDLLGR G L+ A  L+ +MP EP A+ WGALLGA +++ + ELGE  A  +F
Sbjct: 317 LVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIF 376

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           E+EP N+G Y+LLS +YA + RW D   +R +M+ +G++K+PG S L
Sbjct: 377 EMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWL 423



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 15/263 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   ++  W+ ++ GYSQN    E    FV + R+    ++ +F   +  CS++ +
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  +++ G     +VG +L+ +Y K   I  AR  F E+ E++VVSW  MI G
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHG 255

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----- 262
           YA  G   EA TVF+LM        + +  +++      G +    + F  M        
Sbjct: 256 YARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITA 315

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQP---DEAVKIF 318
            +V YT M+D   + G +  A++L +  P + D   W AL+     +G     ++A +I 
Sbjct: 316 KLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQII 375

Query: 319 SDMCSKNVQPDEFILVSLMSACS 341
            +M   N     +IL+S + A S
Sbjct: 376 FEMEPHN--SGMYILLSKLYAAS 396


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 290/505 (57%), Gaps = 13/505 (2%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  +  VF RI   N   W ++L G  QN    +   +F ++ ++   P +YT 
Sbjct: 177 YAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTI 236

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             VI ACS ++ + +G  +H +VI+ G+  + F+  +L+D+Y K  E+  A+ VFDE+  
Sbjct: 237 ATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSY 296

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSAR 253
            ++V WT MIVGY   G+ ++A  +F      +++P  ++V+   ++    ++ DL   R
Sbjct: 297 IDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVP--NSVTIATVLSASAQLRDLSLGR 354

Query: 254 QLFDEMPERNVVSYTT----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
            +     +  +V YT     ++D YAK   ++ A  +F +  ++DVVAW++++SGYA+N 
Sbjct: 355 SIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENN 414

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             ++A+ +F  M  K   PD   +V  +SA   +G+L +      Y  + H  LS  +V 
Sbjct: 415 MCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVK-HAFLSNIYVS 473

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            AL+++  KCG++  A  +F+ M +R+ V++C+MI G  + G    ++ LF  ML +G+ 
Sbjct: 474 TALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVH 533

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           P++VAFT +L+ CSH G+V    R+F++M   + I PS +HYACMVD+L R G+L+ A E
Sbjct: 534 PNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALE 593

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +++MP++   S WGA L  C+L+S ++ GE    R+  L P+    YVL+SN+Y +   
Sbjct: 594 FIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGM 653

Query: 550 WLDVCLVRSKMKERGLRKIPGCSSL 574
           W     +R  M+E+GL K+PG SS+
Sbjct: 654 WEKSQAIRRWMQEKGLVKLPGYSSI 678



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 220/448 (49%), Gaps = 15/448 (3%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP---D 135
           C++    L+ +  VF+    P+ + +  +L    Q  R  E   +   + R    P   D
Sbjct: 73  CYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQD 132

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
            +   L +KAC        GT +H   ++ G   D FV  SL+D+Y K  ++ CARKVF+
Sbjct: 133 DFVLSLALKACIRSADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFE 191

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRS 251
            +P RNVVSWT+M+ G    G   +   +F+ M +     S  +   +I     +  L  
Sbjct: 192 RIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQ 251

Query: 252 ARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            R +   + ++ ++S +     ++D Y K G++  A+ +F+     D+V W+ +I GY Q
Sbjct: 252 GRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQ 311

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
           NG P +A+++F D    N+ P+   + +++SA +Q+ +L L   +     +  + +    
Sbjct: 312 NGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGL-VEYTV 370

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V+ ALVDM AKC  +  A  +F ++ N+DVV++ SM+ G + +     A+ LF +M  +G
Sbjct: 371 VVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKG 430

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
            +PD ++    L+A   +G +  G + F      +A + +      +++L  + G L SA
Sbjct: 431 PSPDAISVVHALSASVCLGDLLIG-KSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSA 489

Query: 488 YELLNSMPVEPHASAWGALLGACKLYSD 515
             + + M  + ++  W A++G   +  D
Sbjct: 490 RRVFDEMN-DRNSVTWCAMIGGYGMQGD 516



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 146/293 (49%), Gaps = 16/293 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H   +K GL + +++V + +   ++    +S +  +F  I N +   WN++L GY++N+
Sbjct: 356 IHGIAVKLGLVE-YTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENN 414

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +   +F ++  +   PD  +    + A   +  +  G + H   ++     +++V T
Sbjct: 415 MCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVST 474

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
           +L++LY K  ++  AR+VFDEM +RN V+W AMI GY   GD   +  +F  M +     
Sbjct: 475 ALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHP 534

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSL 286
           ++V++ +++      G + +A++ FD M +   ++     Y  M+D  A+ G++  A   
Sbjct: 535 NDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEF 594

Query: 287 FEAAP-DRDVVAWSALISG---YAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
            +  P   D   W A + G   +++    +EA+K    M     +PD ++L+S
Sbjct: 595 IDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRM--MVLHPERPDLYVLIS 645



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 18/229 (7%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T ++  YA +GD+ SAR +F+  P  D  ++  ++    Q  +  EAV +  DM  +   
Sbjct: 68  TKLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPC 127

Query: 328 P---DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR-----AHVIAALVDMNAKC 379
           P   D+F+L   + AC +  +         Y +R H D  +       V+ +LVDM AK 
Sbjct: 128 PEAQDDFVLSLALKACIRSADY-------GYGTRLHCDAVKVGGADGFVMNSLVDMYAKA 180

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G+++ A ++FE +P R+VVS+ SM+ G   +G     + LF++M  + + P E     V+
Sbjct: 181 GDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVI 240

Query: 440 TACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           TACS  +GL +  W     ++    ++ +    A ++D+  + G L+ A
Sbjct: 241 TACSALIGLHQGRWMHGSVIKQ--GLMSNSFISAALLDMYVKCGELEDA 287


>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
 gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
          Length = 750

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 264/478 (55%), Gaps = 73/478 (15%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK-----RKEIS 188
           P+ +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +        + 
Sbjct: 109 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGGGGVG 168

Query: 189 CARKVFDEM-------------------------------PERNVVSWTAMIVGYASVGD 217
            AR+VFDEM                               PERNVVSW  ++ G+A +GD
Sbjct: 169 AARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGD 228

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
           +V A+ VFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T M+  YAK+
Sbjct: 229 MVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKI 288

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSL 336
           GD+ +   LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LVS+
Sbjct: 289 GDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 348

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           +SAC+Q+G+++  NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  +F  M  R 
Sbjct: 349 VSACAQLGSVEYCNWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAESIFYKMETRC 407

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           ++++ +MI G + +G  R A+ +++ M  EG+  D+  F   L AC+H GL+++GW  F 
Sbjct: 408 IITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFN 467

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M   Y I P  EHY CMVDLLGR                                    
Sbjct: 468 EMVERYNIQPRMEHYGCMVDLLGRA----------------------------------- 492

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           EL E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 493 ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSI 550



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ AC+ + 
Sbjct: 297 LFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLG 356

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           SV     I + + +  +   V +G +LID++ K  ++  A  +F +M  R +++WT MI 
Sbjct: 357 SVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMIS 416

Query: 211 GYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           G+A  G   +A  V++ M     +  +  + A +      G L+    +F+EM ER  + 
Sbjct: 417 GFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQ 476

Query: 267 -----YTTMID 272
                Y  M+D
Sbjct: 477 PRMEHYGCMVD 487



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 47/220 (21%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V P+ F    L+ AC+ +G       V   + R     S   V  AL+D+  +CG   
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALMDVYHRCGGGG 163

Query: 384 R-----AAELFETMPNRDVVSYCSM-------------------------------IKGL 407
                 A ++F+ M +RDVVS+ S+                               + G 
Sbjct: 164 GGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGF 223

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           +  G    A ++FDRM S     + V++ ++++  +  G VE     F+ M     +   
Sbjct: 224 ARMGDMVTARAVFDRMPSR----NAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVV--- 276

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
              +  MV    + G L +  EL + MPV+   S W A++
Sbjct: 277 --SWTAMVSAYAKIGDLDTVNELFDHMPVKNLVS-WNAMI 313


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 171/527 (32%), Positives = 292/527 (55%), Gaps = 41/527 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + ++  +F  +   +   WN ++   SQ+ R  E  ++ V +       D  T+   + A
Sbjct: 244 VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + S+  G  +HA VIR     D +V +++++LY K      AR+VF  + +RN VSW
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 206 TAMIVGYASVGDLVEAKTVFDLMP------------------------------------ 229
           T +I G+   G   E+  +F+ M                                     
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 230 ---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
               R+ V  N+LI    K G+L++A  +F  M ER++VS+T M+  Y++VG++  AR  
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGN 345
           F+    R+V+ W+A++  Y Q+G  ++ +K++S M + K+V PD    V+L   C+ +G 
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
             L + +  +  +  + L  + V+ A++ M +KCG +  A ++F+ +  +D+VS+ +MI 
Sbjct: 544 NKLGDQITGHTVKVGLILDTS-VMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMIT 602

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G S HG G+QA+ +FD ML +G  PD +++  VL++CSH GLV++G  +F+ ++  + + 
Sbjct: 603 GYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVS 662

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH++CMVDLL R G+L  A  L++ MP++P A  WGALL ACK + + EL EL A  
Sbjct: 663 PGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKH 722

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LF+L+  ++G Y+LL+ IYA A + +D   VR  M+++G++K PG S
Sbjct: 723 LFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYS 769



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 203/423 (47%), Gaps = 49/423 (11%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIK 144
           LS +  +F R+   +   WNTL+ GY Q+ RF++    FV + R  +++P+ +TF   +K
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           +C  +        +   + ++G   D  V T ++D++ +   +  A K F ++    V  
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
             +M+ GYA    +  A  +F+ MPER  VSWN ++  L + G  R A  +  +M  R V
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 265 ----VSYTT-----------------------------------MIDGYAKVGDMTSARS 285
                +YT+                                   M++ YAK G    AR 
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F +  DR+ V+W+ LI G+ Q G   E++++F+ M ++ +  D+F L +++S CS   +
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 346 LDLSNWVDSY-LSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           + L+  + S  L   H   +RA VI+ +L+ M AKCGN+  A  +F +M  RD+VS+  M
Sbjct: 411 MCLARQLHSLSLKSGH---TRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGM 467

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           +   S  G+  +A   FD M     T + + +  +L A    G  EDG + + AM     
Sbjct: 468 LTAYSQVGNIGKAREFFDGM----STRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKD 523

Query: 464 IVP 466
           ++P
Sbjct: 524 VIP 526



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 182/393 (46%), Gaps = 50/393 (12%)

Query: 161 AVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
            ++R  + E +V     +++ Y K   +S A ++F  MP R+V SW  ++ GY   G  +
Sbjct: 84  GLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFL 143

Query: 220 EAKTVFDLMPERSNVSWNALIGG------------------------------------- 242
           +A   F  M    +   NA   G                                     
Sbjct: 144 DAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGI 203

Query: 243 ---LVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
               V+ G +  A + F ++    V    +M+ GYAK   +  A  LFE+ P+RDVV+W+
Sbjct: 204 VDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWN 263

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
            ++S  +Q+G+  EA+ +  DM ++ V+ D     S ++AC+++ +L     + + + RS
Sbjct: 264 MMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS 323

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            +     +V +A+V++ AKCG    A  +F ++ +R+ VS+  +I G   +G   +++ L
Sbjct: 324 -LPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLEL 382

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSH---VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           F++M +E +T D+ A   +++ CS+   + L            +  A+V S      ++ 
Sbjct: 383 FNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNS----LIS 438

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +  + G+L++A  + +SM  E    +W  +L A
Sbjct: 439 MYAKCGNLQNAESIFSSME-ERDIVSWTGMLTA 470



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 166/356 (46%), Gaps = 42/356 (11%)

Query: 237 NALIGGLVKIGDLRSARQLF-DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N L+   +  G L  AR L   ++ E NV+++  M++GYAK+G ++ A  LF   P RDV
Sbjct: 67  NTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDV 126

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            +W+ L+SGY Q+G+  +A++ F  M  S +  P+ F     M +C  +G  +++  +  
Sbjct: 127 TSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLG 186

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCG-------------------------------NMD 383
            L++         V   +VDM  +CG                                +D
Sbjct: 187 LLTKFGFQ-GDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVD 245

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A ELFE+MP RDVVS+  M+  LS  G  R+A+S+   M + G+  D   +T  LTAC+
Sbjct: 246 HALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACA 305

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHY--ACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
            +  +  GW   +    V   +P  + Y  + MV+L  + G  K A  + +S+  + +  
Sbjct: 306 KLSSL--GWG-KQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLR-DRNTV 361

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           +W  L+G    Y        + N++   E      + L + I   ++R +D+CL R
Sbjct: 362 SWTVLIGGFLQYGCFSESLELFNQM-RAELMTVDQFALATIISGCSNR-MDMCLAR 415



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 13/182 (7%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+  H +K GL  D S++   I++ +S    +S +  +F+ +   +   WN ++ GYSQ+
Sbjct: 549 QITGHTVKVGLILDTSVMNAVITM-YSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQH 607

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   IF  ++++ A PD  ++  V+ +CSH   V+EG      + R   D +V  G
Sbjct: 608 GMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKR---DHNVSPG 664

Query: 175 ----TSLIDLYGKRKEISCARKVFDEMPERNVVS-WTAMIVGYASVG--DLVE--AKTVF 225
               + ++DL  +   +  A+ + DEMP +     W A++    + G  +L E  AK +F
Sbjct: 665 LEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLF 724

Query: 226 DL 227
           DL
Sbjct: 725 DL 726


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 277/500 (55%), Gaps = 15/500 (3%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYS-QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
           L  +  VF+++   +   WN+++ G+S     + EV  + V++ + +  P+  T   V+ 
Sbjct: 170 LDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLP 228

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVV 203
           A + V S+R G  IH   +R G   DV VGT ++D+YGK + I  AR++FD M   +N V
Sbjct: 229 AVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEV 288

Query: 204 SWTAMIVGYASVGDLVEAKTVF-------DLMPERSNVSWNALIGGLVKIGDLRSARQLF 256
           +W+AM+  Y     + EA  +F       D +   S V+   +I     + DL +   L 
Sbjct: 289 TWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLH 348

Query: 257 DEMPERNVV----SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
               +   V       T++  YAK G +  A   F     RD V+++A+ISGY QNG  +
Sbjct: 349 CYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSE 408

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           E +++F +M    + P++  L S++ AC+ +  L   +    Y        +   +  AL
Sbjct: 409 EGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFT-ADTMICNAL 467

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           +DM AKCG +D A ++F+ M  R +VS+ +MI    IHG G +A+ LFD M SEGL PD+
Sbjct: 468 IDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDD 527

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           V F  +++ACSH GLV +G  +F AM   + I+P  EHYACMVDLL R G  K  +  + 
Sbjct: 528 VTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIE 587

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
            MP+EP    WGALL AC++Y ++ELGE V+ ++ +L P++ G++VLLSN+Y+   RW D
Sbjct: 588 KMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDD 647

Query: 553 VCLVRSKMKERGLRKIPGCS 572
              VR   KE+G  K PGCS
Sbjct: 648 AAQVRFTQKEQGFEKSPGCS 667



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 216/432 (50%), Gaps = 30/432 (6%)

Query: 84  TPLSYSTAVFNRIVN--PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
           + L  +  VF+++ +   N  LWN L++ Y+ N  + E   ++ +++     P+++TFP 
Sbjct: 65  SELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPF 124

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V+KACS +    EG  IH  + R  ++ +V+V T+L+D Y K   +  A++VFD+M +R+
Sbjct: 125 VLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRD 184

Query: 202 VVSWTAMIVGYA-SVGDLVEAKTVFDLMPERSNVSWNALIG---GLVKIGDLRSARQLFD 257
           VV+W +MI G++   G   E   +   M    + + + ++G    + ++  LR  +++  
Sbjct: 185 VVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHG 244

Query: 258 EMPER----NVVSYTTMIDGYAKVGDMTSARSLFE-AAPDRDVVAWSALISGYAQNGQPD 312
               R    +VV  T ++D Y K   +  AR +F+     ++ V WSA++  Y       
Sbjct: 245 FCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMR 304

Query: 313 EAVKIFSDMCSKNVQPDEFILVS------LMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           EA+++F   C   +  D+ I++S      ++  C+ + +L     +  Y  +S   L   
Sbjct: 305 EALELF---CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLM 361

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            V   L+ M AKCG ++ A   F  M  RD VS+ ++I G   +G+  + + +F  M   
Sbjct: 362 -VGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLS 420

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP--SPEHYAC--MVDLLGRTG 482
           G+ P++     VL AC+H+  +  G     +  + YAI+   + +   C  ++D+  + G
Sbjct: 421 GINPEKATLASVLPACAHLAGLHYG-----SCSHCYAIICGFTADTMICNALIDMYAKCG 475

Query: 483 HLKSAYELLNSM 494
            + +A ++ + M
Sbjct: 476 KIDTARKVFDRM 487



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDR--DVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           V +  ++D Y    ++  AR +F+  P R  +VV W+ LI  YA NG  +EA+ ++  M 
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
              + P+ F    ++ ACS +        +   + R  ++ S  +V  ALVD  AKCG +
Sbjct: 112 GYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLE-SNVYVSTALVDFYAKCGCL 170

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           D A E+F+ M  RDVV++ SMI G S+H      V+     +   ++P+      VL A 
Sbjct: 171 DDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAV 230

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           + V  +  G +           V        ++D+ G+   +  A  + + M +  +   
Sbjct: 231 AQVNSLRHG-KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVT 289

Query: 503 WGALLGA 509
           W A++GA
Sbjct: 290 WSAMVGA 296



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 138/279 (49%), Gaps = 24/279 (8%)

Query: 177 LIDLYGKRKEISCARKVFDEMPER--NVVSWTAMIVGYASVG------DLVEAKTVFDLM 228
           L+DLY    E+  AR VFD+MP R  NVV W  +I  YA  G      DL      + + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSAR 284
           P R   ++  ++     + +    R++  ++     E NV   T ++D YAK G +  A+
Sbjct: 117 PNR--FTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAK 174

Query: 285 SLFEAAPDRDVVAWSALISGYA-QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            +F+    RDVVAW+++ISG++   G  DE  ++   M   +V P+   +V ++ A +QV
Sbjct: 175 EVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQV 233

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCS 402
            +L     +  +  R    +    V   ++D+  KC  +D A  +F+ M   ++ V++ +
Sbjct: 234 NSLRHGKEIHGFCVRRGF-VGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSA 292

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           M+    +    R+A+ LF ++L   +  D+V   IVL+A
Sbjct: 293 MVGAYVVCDFMREALELFCQLL---MLKDDV---IVLSA 325


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 180/555 (32%), Positives = 298/555 (53%), Gaps = 15/555 (2%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           +P     +S++      +  TH  ++H  ++K GL+ +  LV+  I +     + +  + 
Sbjct: 208 YPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGS-IKNAE 266

Query: 91  AVFNRI-----VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
            +FN I     V  N  +WN ++ GY  N  F +   +F++++     PD  T   +   
Sbjct: 267 NIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSL 326

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS  L +  G  IH  + ++G+  ++ V T+L+D+Y K  ++    K+F      N++ W
Sbjct: 327 CSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMW 386

Query: 206 TAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLR---SARQLFDEMPE 261
           +A+I   A  G   +A  +F +   E        L+  L     L       Q+     +
Sbjct: 387 SAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATK 446

Query: 262 RNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
              VS     + ++D YAK  DM  ++ +F     +D+V+W+ALISGYAQ+   DEA+K 
Sbjct: 447 MGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKA 506

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F DM  + ++P+   +  ++S C+ +  + L   V  YL R  +  S   V  +L+   A
Sbjct: 507 FRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLG-STVLVSNSLIATYA 565

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG+++ +   FE MP R+ VS+ S+I G+ +H    + + LFD+M++ G+ PD V FT 
Sbjct: 566 KCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTA 625

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           +L+ACSH G V++G ++F++M   + + P  E Y CMVDLLGR GHL  AY+L+ +MP  
Sbjct: 626 ILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCT 685

Query: 498 PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
           P    WG+LLG+CK + D  L E+VAN +F+L P + G  VLL+N+Y    +  +   VR
Sbjct: 686 PDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVR 745

Query: 558 SKMKERGLRKIPGCS 572
           S++K+ GL+K PGCS
Sbjct: 746 SEIKDMGLKKKPGCS 760



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 231/479 (48%), Gaps = 28/479 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H H++K G+  D S+V   +++       +  +  +F ++   +   WNT++ G+ ++
Sbjct: 130 QIHGHVLKLGVLDDVSVVNSLLTMYWKCGV-VEDAVQMFEKMPEVDLVSWNTMISGFQKS 188

Query: 115 SRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
             +      F  ++ E  + P++      I +CS + S+  G  IH  V++ G+D + ++
Sbjct: 189 MDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYL 248

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPE-----RNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            +SLI++Y K   I  A  +F+ + +     RN V W  MI GY S G   +A  +F  M
Sbjct: 249 VSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKM 308

Query: 229 ------PERSN-VSWNALIGGLVKIGDLRSARQL-FDEMPERNVVSYTTMIDGYAKVGDM 280
                 P+ S  VS  +L    + I   +    L F    + N+   T ++D Y K GDM
Sbjct: 309 MVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDM 368

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            +   +F  + + +++ WSA+IS  AQ+G P +A+++F +   ++   D  ILV+++ AC
Sbjct: 369 GTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRAC 428

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           S +  L         L+     +S   V +ALVD+ AKC +M  + ++F  +  +D+VS+
Sbjct: 429 SSL-TLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSW 487

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE-----DGWRFF 455
            ++I G +      +A+  F  M  E + P+ V    +L+ C+H+ ++       G+   
Sbjct: 488 NALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIR 547

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           + + +   +  S      ++    + G + S+      MP E +  +W +++    ++S
Sbjct: 548 QGLGSTVLVSNS------LIATYAKCGDINSSLYTFEKMP-ERNDVSWNSIILGMGMHS 599



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 211/448 (47%), Gaps = 34/448 (7%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT-FPLVIKACSHVLSVREGTAIHAAVI 163
           N +++ Y+++  F +   ++++++ +    +++  FP +IKA   +  V +G  IH  V+
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + GV +DV V  SL+ +Y K   +  A ++F++MPE ++VSW  MI G+    D   +  
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 224 VFDLMPERSNVSWN--ALIGGLVKIGDLRS---ARQLFDEMPER--NVVSY--TTMIDGY 274
            F  M     +  N  A +  ++    L+S    R++   + +   +V  Y  +++I+ Y
Sbjct: 197 FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMY 256

Query: 275 AKVGDMTSARSLFEAAPDRD-----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
            K G + +A ++F +  D+D      V W+ +ISGY  NG   +A+ +F  M    ++PD
Sbjct: 257 MKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPD 316

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              +VSL S CS+  ++     +   + +  +  +   V  AL+DM  KCG+M    ++F
Sbjct: 317 YSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLK-NNIRVETALLDMYLKCGDMGTGLKIF 375

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
               N +++ + ++I   +  G   +A+ LF     E    D      VL ACS + L  
Sbjct: 376 RRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKP 435

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGR---TGHLKSAYELLNSMPVEPHASAWGAL 506
           +G +    +      V      + +VDL  +    G+ K  +  L+    +    +W AL
Sbjct: 436 EGMQ-IHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS----QKDLVSWNAL 490

Query: 507 LG----------ACKLYSDIELGELVAN 524
           +           A K + D++L E+  N
Sbjct: 491 ISGYAQDECADEALKAFRDMQLEEIRPN 518


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 275/488 (56%), Gaps = 8/488 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  ++  +   WNTLL G  QN  + +    F  +      PD+ +   +I A     +
Sbjct: 305 VFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGN 364

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA  IR G+D ++ +G +LID+Y K   +      F+ M E++++SWT +I G
Sbjct: 365 LLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAG 424

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------NV 264
           YA     +EA  +F  +  +       +IG +++      +R    E+          ++
Sbjct: 425 YAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADI 484

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +    +++ Y +VG    AR  FE+   +D+V+W+++I+    NG P EA+++F  +   
Sbjct: 485 MLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           N+QPD   ++S +SA + + +L     +  +L R    L    + ++LVDM A CG ++ 
Sbjct: 545 NIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFL-EGPIASSLVDMYACCGTVEN 603

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           + ++F ++  RD++ + SMI    +HG G +A++LF +M  E + PD + F  +L ACSH
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSH 663

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GL+ +G RFFE M+  Y + P PEHYACMVDLL R+  L+ AY+ + SMP++P +  W 
Sbjct: 664 SGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWC 723

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGAC ++S+ ELGEL A  L + + +N+G Y L+SNI+A   RW DV  VR +MK  G
Sbjct: 724 ALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 565 LRKIPGCS 572
           L+K PGCS
Sbjct: 784 LKKNPGCS 791



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 224/475 (47%), Gaps = 33/475 (6%)

Query: 54  HQVHSHIIKKGLEQD-HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
            Q+H+ ++K  L     + + H    C SL   +     VF+ +     F WN ++  + 
Sbjct: 66  QQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVK----VFDEMTERTIFTWNAMMGAFV 121

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
            + +++E   ++  +       D  TFP V+KAC  +   R G  IH   ++ G  E VF
Sbjct: 122 SSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVF 181

Query: 173 VGTSLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           V  +LI +YGK  ++  AR +FD   M + + VSW ++I  + + G  +EA ++F  M E
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQE 241

Query: 231 ----RSNVSWNALIGG-----LVKIG-DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                +  ++ A + G      VK+G  +  A    +   +  V +   +I  YAK G M
Sbjct: 242 VGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVAN--ALIAMYAKCGRM 299

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A  +F +   RD V+W+ L+SG  QN    +A+  F DM +   +PD+  +++L++A 
Sbjct: 300 EDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAAS 359

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
            + GNL     V +Y  R+ +D S   +   L+DM AKC  +      FE M  +D++S+
Sbjct: 360 GRSGNLLNGKEVHAYAIRNGLD-SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISW 418

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            ++I G + +    +A++LF ++  +G+  D +    VL ACS       G +    ++ 
Sbjct: 419 TTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIRE 471

Query: 461 VYAIVPSPEHYACM-----VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           ++  V   +    M     V++ G  GH   A     S+  +   S W +++  C
Sbjct: 472 IHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVS-WTSMITCC 525



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 122/287 (42%), Gaps = 26/287 (9%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQ---DHSLVAHFISLCHSLATPLSYST 90
           P  + S L      K +  + ++H ++ K+ L      +++V  +  + H       Y+ 
Sbjct: 450 PMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHR-----DYAR 504

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
             F  I + +   W +++     N   +E   +F  L +    PD       + A +++ 
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           S+++G  IH  +IR G   +  + +SL+D+Y     +  +RK+F  + +R+++ WT+MI 
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMIN 624

Query: 211 GYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEM------- 259
                G   EA  +F  M + +    ++++ AL+      G +   ++ F+ M       
Sbjct: 625 ANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLE 684

Query: 260 --PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
             PE     Y  M+D  ++   +  A     + P +     W AL+ 
Sbjct: 685 PWPEH----YACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLG 727


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 303/561 (54%), Gaps = 19/561 (3%)

Query: 25  RSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           R  P  +  P  L +   L   C  +T    +H+H    GL  D  +    I L +    
Sbjct: 94  RVPPNKYTFPFVLKACSALADLCAGRT----IHAHAAAVGLHTDLFVSTALIDL-YIRCA 148

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVI 143
               +  VF ++   +   WN +L GY+ +  +       + +  R    P+  T   ++
Sbjct: 149 RFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLL 208

Query: 144 KACSHVLSVREGTAIHAAVIRWGVD---EDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
              +   ++ +GT++HA  +R  +D   E V +GT+L+D+Y K K +  A +VF  M  R
Sbjct: 209 PLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR 268

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVF-DLMPER----SNVSWNALIGGLVKIGDLRSARQL 255
           N V+W+A+I G+     + EA  +F D++ E     S  S  + +     + DLR   QL
Sbjct: 269 NEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQL 328

Query: 256 FDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
              + +  +     +  +++  YAK G +  A  LF+    +D +++ AL+SGY QNG+ 
Sbjct: 329 HALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKA 388

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           +EA  +F  M + NVQPD   +VSL+ ACS +  L         +    + L  + +  +
Sbjct: 389 EEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS-ICNS 447

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+DM AKCG +D + ++F+ MP RD+VS+ +MI G  IHG G++A +LF  M ++G  PD
Sbjct: 448 LIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPD 507

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           +V F  ++ ACSH GLV +G  +F+ M + Y I+P  EHY CMVDLL R G L  AY+ +
Sbjct: 508 DVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFI 567

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            SMP++     WGALLGAC+++ +I+LG+ V+  + +L P+  G++VLLSNI++ A R+ 
Sbjct: 568 QSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFD 627

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           +   VR   K +G +K PGCS
Sbjct: 628 EAAEVRIIQKVKGFKKSPGCS 648



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 227/495 (45%), Gaps = 37/495 (7%)

Query: 58  SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           SH +K   E    L  H           L+ +  VF+RI  P+   +N L++ YS    F
Sbjct: 27  SHEVKDNKEWQQELEQHIAR------GQLALARQVFDRIPAPDARAYNALIRAYSWRGPF 80

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
                ++  ++     P+KYTFP V+KACS +  +  G  IHA     G+  D+FV T+L
Sbjct: 81  HAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTAL 140

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237
           IDLY +      A  VF +MP R+VV+W AM+ GYA+ G    A      M +R  +  N
Sbjct: 141 IDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPN 200

Query: 238 A-----LIGGLVKIGDLRSA--------RQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           A     L+  L + G L           R   D+  E+ ++  T ++D YAK   +  A 
Sbjct: 201 ASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIG-TALLDMYAKCKHLVYAC 259

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI----LVSLMSAC 340
            +F     R+ V WSALI G+    +  EA  +F DM    V+   F+    + S +  C
Sbjct: 260 RVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDML---VEGMCFLSATSVASALRVC 316

Query: 341 SQVGNLDLSNWVDSYLSRS--HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           + + +L +   + + L++S  H DL+  +   +L+ M AK G ++ A  LF+ +  +D +
Sbjct: 317 ASLADLRMGTQLHALLAKSGIHADLTAGN---SLLSMYAKAGLINEATMLFDEIAIKDTI 373

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           SY +++ G   +G   +A  +F +M +  + PD      ++ ACSH+  ++ G R     
Sbjct: 374 SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHG-RCSHGS 432

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
             +  +         ++D+  + G +  + ++ + MP     S W  ++    ++    L
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVS-WNTMIAGYGIHG---L 488

Query: 519 GELVANRLFELEPQN 533
           G+        ++ Q 
Sbjct: 489 GKEATTLFLSMKNQG 503


>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
 gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
          Length = 451

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 170/441 (38%), Positives = 260/441 (58%), Gaps = 35/441 (7%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARK 192
           P+ +T   VIK CS V +V EG  +HA + + G+    V VG +L+DLYG          
Sbjct: 8   PNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYG---------- 57

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
                                ++G + +A+ VFD MP ++ V  N ++   V+ GD+ +A
Sbjct: 58  ---------------------NIGLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAA 96

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           R++FD M ER+ +S+ T++ GY  +GD  + R LF+    R+V +W+ +I+  ++ G   
Sbjct: 97  REVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLA 156

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           + VK+F+ M +   +PD   +  LMSAC+Q+G+L ++  V   L +S ++++  HV  +L
Sbjct: 157 DTVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMN-CHVQNSL 215

Query: 373 VDMNAKCGNMDRAAELF-ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +DM AKCG + +A  LF ET P +D VSY  MI   + HGH R A+ LF+ M+  GL PD
Sbjct: 216 IDMYAKCGCISQAQFLFTETYP-KDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPD 274

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            V F  VL+AC+H GLVE G  +FE M+  YA+  SP+HYAC+VDL GR G ++ A+  +
Sbjct: 275 AVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFV 334

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
            +MPV+PHA  WGALL AC+ +  +++GE+ A  L  +EP+N G+YVLL N  A   +W 
Sbjct: 335 KTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWD 394

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
            V  V+  M+ + + K  GCS
Sbjct: 395 AVEDVQLSMRRKVIDKTAGCS 415



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 10/222 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   N   WNT++   S+     +   +F R+      PD  T  +++ AC+ + S
Sbjct: 130 LFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGS 189

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +     +H  + +  V+ +  V  SLID+Y K   IS A+ +F E   ++ VS+  MI+ 
Sbjct: 190 LTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIA 249

Query: 212 YASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           +A  G   +A  +F+ M +       V++  ++      G +   +  F+ M     V  
Sbjct: 250 FAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQ 309

Query: 267 ----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
               Y  ++D Y + G +  A    +  P +     W AL++
Sbjct: 310 SPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLN 351



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           +P+ F + S++  CS+V  +     V ++L+++ +  S  HV AAL+D+    G +  A 
Sbjct: 7   RPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGDAR 66

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +F+ MP ++VV   +M+      G    A  +FD M       D +++  +++   H+G
Sbjct: 67  RVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAER----DPISWNTLMSGYLHLG 122

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAW 503
                   F+ M      V +   +  M+      G L    ++ N M     EP A+  
Sbjct: 123 DTATVRELFDEM-----TVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATM 177

Query: 504 GALLGAC 510
             L+ AC
Sbjct: 178 AVLMSAC 184


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 304/549 (55%), Gaps = 17/549 (3%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S +LSA   +K   L    HQ+HS IIK     +   V + +   ++ +  L  +   F 
Sbjct: 432 SSILSACACLKYLDLG---HQLHSVIIKNKFASN-LFVGNALVDMYAKSGALEDARQQFE 487

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            I N +   WN ++ GY Q    +E F +F R+     +PD+ +   ++ AC+ V  + +
Sbjct: 488 LIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQ 547

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H   ++ G +  ++ G+SLID+Y K   I  A K+   MPER+VVS  A+I GYA 
Sbjct: 548 GKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQ 607

Query: 215 VGDLVEAKTVF-DLMPERSN---VSWNALIGGLVKIGDLRSARQLFDEMPERNV-----V 265
           + +L +A  +F D++ E  N   +++ +L+    +   L   RQ+   + +  +      
Sbjct: 608 I-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEF 666

Query: 266 SYTTMIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
              +++  Y      T A  LF E +  +  V W+A+ISG +QN     A++++ +M S 
Sbjct: 667 LGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSC 726

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           NV PD+   VS + AC+ V ++       S +  +  D S     +ALVDM AKCG++  
Sbjct: 727 NVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFD-SDELTSSALVDMYAKCGDVKS 785

Query: 385 AAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           + ++F+ M   +DV+S+ SMI G + +G+   A+ +FD M    +TPD+V F  VLTACS
Sbjct: 786 SMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACS 845

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H G V +G   F+ M N+Y + P  +H ACMVDLLGR G LK A E +N +  EP A  W
Sbjct: 846 HSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVW 905

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
             +LGAC+++ D   G+  A +L ELEPQN+  YVLLSNIYA +  W +V  +R +M+E+
Sbjct: 906 ATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREK 965

Query: 564 GLRKIPGCS 572
           G++K+PGCS
Sbjct: 966 GVKKLPGCS 974



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 226/464 (48%), Gaps = 18/464 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+  +K+GL  +  + +  +S+ ++    +  +  VF+ +   N  LWN +L GY QN 
Sbjct: 349 VHAEALKQGLHSNVYVGSSLVSM-YAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNG 407

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              EV  +F  +      PD +T+  ++ AC+ +  +  G  +H+ +I+     ++FVG 
Sbjct: 408 YANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGN 467

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMP 229
           +L+D+Y K   +  AR+ F+ +  R+ VSW  +IVGY    D VEA  +F       ++P
Sbjct: 468 ALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILP 527

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           +   VS  +++     +  L   +Q+         E  + S +++ID YAK G + SA  
Sbjct: 528 DE--VSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHK 585

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +    P+R VV+ +ALI+GYAQ    ++AV +F DM  + +   E    SL+ AC +   
Sbjct: 586 ILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQK 644

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMI 404
           L+L   + S + +  + L    +  +L+ M         A+ LF    N +  V + +MI
Sbjct: 645 LNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMI 704

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            GLS +     A+ L+  M S  + PD+  F   L AC+ V  ++DG      +   +  
Sbjct: 705 SGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLI--FHTG 762

Query: 465 VPSPE-HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
             S E   + +VD+  + G +KS+ ++   M  +    +W +++
Sbjct: 763 FDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMI 806



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 187/365 (51%), Gaps = 10/365 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  ++ +F+R+ N N   WN ++ G+++    +E    F  + +      + T   V+ A
Sbjct: 277 LDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + + ++  G  +HA  ++ G+  +V+VG+SL+ +Y K  ++  A+KVFD + E+NVV W
Sbjct: 337 IASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLW 396

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
            AM+ GY   G   E   +F  M        + ++++++     +  L    QL   + +
Sbjct: 397 NAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIK 456

Query: 262 R----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                N+     ++D YAK G +  AR  FE   +RD V+W+ +I GY Q     EA  +
Sbjct: 457 NKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHL 516

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M    + PDE  L S++SAC+ V  L+    V   LS      ++ +  ++L+DM A
Sbjct: 517 FRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHC-LSVKTGQETKLYSGSSLIDMYA 575

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           KCG +D A ++   MP R VVS  ++I G +   +  QAV+LF  ML EG+   E+ F  
Sbjct: 576 KCGAIDSAHKILACMPERSVVSMNALIAGYA-QINLEQAVNLFRDMLVEGINSTEITFAS 634

Query: 438 VLTAC 442
           +L AC
Sbjct: 635 LLDAC 639



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/545 (26%), Positives = 244/545 (44%), Gaps = 89/545 (16%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+  +K G      ++ + I   ++    + Y+   F ++ + +   WN++L  +S+  
Sbjct: 81  IHAQSLKLGF-WSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQG 139

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
               V   F  L      P+++TF +V+ +C+ +  V+ G  +H  V++ G +   +   
Sbjct: 140 FPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEG 199

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PER 231
           +LI +Y K   ++ AR +FD   E + VSWT+MI GY  VG   EA  VF  M     E 
Sbjct: 200 ALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEP 259

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE--- 288
             V++  +I   V +G L +A  LF  MP RNVV++  MI G+AK G    A   F+   
Sbjct: 260 DQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMR 319

Query: 289 ---------------------AAPD---------------RDVVAWSALISGYAQNGQPD 312
                                AA D                +V   S+L+S YA+ G+ +
Sbjct: 320 KAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKME 379

Query: 313 EAVKIFSDMCSKNV-------------------------------QPDEFILVSLMSACS 341
            A K+F  +  +NV                                PD+F   S++SAC+
Sbjct: 380 AAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACA 439

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            +  LDL + + S + ++    S   V  ALVDM AK G ++ A + FE + NRD VS+ 
Sbjct: 440 CLKYLDLGHQLHSVIIKNKF-ASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWN 498

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            +I G        +A  LF RM   G+ PDEV+   +L+AC+ V  +E G +      + 
Sbjct: 499 VIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQV-----HC 553

Query: 462 YAIVPSPEHY----ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
            ++    E      + ++D+  + G + SA+++L  MP E    +  AL+     Y+ I 
Sbjct: 554 LSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMP-ERSVVSMNALIAG---YAQIN 609

Query: 518 LGELV 522
           L + V
Sbjct: 610 LEQAV 614


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 179/582 (30%), Positives = 302/582 (51%), Gaps = 49/582 (8%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S LLS+ T +K         Q+H HII  G EQ   LV   ++   +    +       N
Sbjct: 178 SSLLSSCTDVKSL---AEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 234

Query: 95  -RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
             I++P  F WN L+  Y +N    +  + + +++++   PD +T+P V+KAC   L + 
Sbjct: 235 SNILHP--FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLG 292

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +H ++    +   + V  +LI +YGK  ++  AR +FD++PER+ VSW +MI  YA
Sbjct: 293 FGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYA 352

Query: 214 SVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE-------- 261
           S+G   EA  +F  M     E + + WN + GG ++ G+ + A +L  +M +        
Sbjct: 353 SMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSV 412

Query: 262 ------------------RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAA 290
                             + + S+              ++I  Y++  D+  A  LF+  
Sbjct: 413 ALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLM 472

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
             + +++W+++ISG     + +EA  +  +M    ++P+   + S++  C++V NL    
Sbjct: 473 EAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGK 532

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
               Y++R         +  ALVDM A+ G +  A  +F+ +  RD ++Y SMI G  + 
Sbjct: 533 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQ 592

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G+ A+ LF+ M +  + PD +    VL+ACSH GLV  G   FE M+++Y + P  EH
Sbjct: 593 GEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEH 652

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           +ACM DL GR G L  A E++ +MP +P  + W  L+GAC+++ + E+GE  A +L E++
Sbjct: 653 FACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMK 712

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           P+N G YVL++N+YA A  W  +  VR  M++ G+RK PGC+
Sbjct: 713 PENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCA 754



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/218 (18%), Positives = 92/218 (42%), Gaps = 8/218 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    + S L L  +     H  + H ++ ++   +DH L+ + +   ++ +  +  +  
Sbjct: 510 PNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARR 569

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   + +++ GY           +F  +   +  PD  T   V+ ACSH   
Sbjct: 570 VFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGL 629

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V +G  +   +   +G+   +     + DL+G+   ++ A+++   MP +   +  A ++
Sbjct: 630 VTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLI 689

Query: 211 GYASVGDLVE-----AKTVFDLMPERSNVSWNALIGGL 243
           G   +    E     A+ + ++ PE  N  +  LI  +
Sbjct: 690 GACRIHRNTEIGEWAAEKLLEMKPE--NPGYYVLIANM 725


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 184/496 (37%), Positives = 280/496 (56%), Gaps = 25/496 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           VF+ + +P+T LWNTLL G   +    E    FVR++    V PD  T    ++A +   
Sbjct: 171 VFDTVPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEAS 226

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +  G  +H   ++ G+ E   V T L+ LY K  ++  A+ +FD M   ++V++ A+I 
Sbjct: 227 HMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALIS 286

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRS-------ARQL----FDEM 259
           GY SV  +VE+    +L  E +   W      LV +  + S       AR L        
Sbjct: 287 GY-SVNGMVESSV--ELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
            + + +  T +   Y ++ DM SARS+F+A  ++ + +W+A+ISGYAQNG  + AV +F 
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQ 403

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M   NVQP+   + S +SAC+ +G L L  WV   +S+  ++L+  +V+ AL+DM AKC
Sbjct: 404 LMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELN-VYVMTALIDMYAKC 462

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G++  A  +F+ M N++VVS+ +MI G  +HG G +A+ L+  ML   + P    F  V+
Sbjct: 463 GSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVI 522

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---V 496
            ACSH GLV++G + F  M N Y I P  EH  CMVDLLGR G L  A EL++  P   +
Sbjct: 523 YACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAI 582

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
            P    WGALLGAC ++ + +L +L + +LFEL+ +NAG YVLLSN+Y +   + +  +V
Sbjct: 583 GP--GVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVV 640

Query: 557 RSKMKERGLRKIPGCS 572
           R + K R L K PGC+
Sbjct: 641 RQEAKTRKLVKTPGCT 656


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 283/536 (52%), Gaps = 75/536 (13%)

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           P+ F WN+ L G +Q+ + +     F  ++ ++ V    ++ L+++       VR G  +
Sbjct: 172 PDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMV----SWNLMLEGF-----VRAGD-L 221

Query: 159 HAAVIRWGVDE--DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            AA   +G  E  +V    +L++ Y +   IS AR +FD MPERNVV+   M+ GY  + 
Sbjct: 222 DAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLS 281

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA------------------------ 252
            L EA  +FD MP ++++SW  +I GL + G L+ A                        
Sbjct: 282 RLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQ 341

Query: 253 -------RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
                  RQ+FD M   + V + TMI GY + G +  A  LF+  P++D V+W+ +I+GY
Sbjct: 342 RNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGY 401

Query: 306 AQNGQPDEAVKIFSDMCSKN-----------VQPDEFI--------------------LV 334
           AQ GQ  +A+ IF  M  KN           VQ   F+                      
Sbjct: 402 AQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYA 461

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S + AC+ +  L +   + S L RS   ++      AL+   AKCG M  A ++F+ M  
Sbjct: 462 SCLRACANLAALHVGRQLHSLLVRSG-HINDLFARNALISTYAKCGRMLEAKQIFDEMVG 520

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           +D+VS+ +++ G + +G G +A+S+F  M + G+ PDEV F  +L+ACS  GL+++G  F
Sbjct: 521 KDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLGF 580

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           F +M   Y++ P  EHYACM DLLGR G L  A+EL+  M ++P+A  WGALLGAC++Y 
Sbjct: 581 FNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMYK 640

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + EL  L A +L ELEP  A +YVLLSNI A A +W +    R+ +KE+G  K PG
Sbjct: 641 NHELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGANKPPG 696



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 171/326 (52%), Gaps = 21/326 (6%)

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           VF     +    +  +++ AR++FD MP RN V++ +M+   A  G + EA+ +FD MP 
Sbjct: 18  VFRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPS 77

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
           R+ VSWNA+I  L   G +  AR LFD MP R+  S+T M+  YA+ G++  AR + +  
Sbjct: 78  RNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRM 137

Query: 291 P-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
           P D+    ++A+ISGYA+NG+ D+AVK+  +M +    PD F   S ++  +Q G +  +
Sbjct: 138 PGDKCTACYNAMISGYAKNGRFDDAVKLLREMPA----PDLFSWNSALAGLTQSGQMVRA 193

Query: 350 -NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
             + D  + +  +  +       +++   + G++D AA  F  + + +VVS+ +++ G  
Sbjct: 194 VQFFDEMVEKDMVSWN------LMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYC 247

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
             G    A  LFDRM    +    VA  ++L     +  +E+  + F+ M    +I    
Sbjct: 248 RAGRISDARDLFDRMPERNV----VACNVMLDGYVRLSRLEEACKLFDEMPGKNSI---- 299

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSM 494
             +  ++  L R G L+ A +LL+ M
Sbjct: 300 -SWTTIISGLARAGKLQEAKDLLDKM 324



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 185/398 (46%), Gaps = 43/398 (10%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           + A+F+ + + N   WN ++   S + R  +   +F R+      P +  F   +    +
Sbjct: 68  ARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRM------PSRDDFSWTVMVSCY 121

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
                E       + R   D+      ++I  Y K      A K+  EMP  ++ SW + 
Sbjct: 122 A-RAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSA 180

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           + G    G +V A   FD M E+  VSWN ++ G V+ GDL +A   F  +   NVVS+ 
Sbjct: 181 LAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWV 240

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           T+++GY + G ++ AR LF+  P+R+VVA + ++ GY +  + +EA K+F +M  KN   
Sbjct: 241 TLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKN--- 297

Query: 329 DEFILVSLMSACSQVGNL----DL------------SNWVDSYLSRSHMDLSRAHVIAAL 372
                 +++S  ++ G L    DL            +  +  YL R+ ++ +R  +   +
Sbjct: 298 -SISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMVNDAR-QIFDGM 355

Query: 373 VDMNAKC-----------GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
              +  C           G ++ A  LF+ MPN+D VS+ +MI G +  G  R+A+ +F 
Sbjct: 356 EVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFR 415

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           RM  +    + V++  V++     GL  D +  F  M+
Sbjct: 416 RMSRK----NTVSWNSVISGFVQNGLFVDAFHHFMLMR 449



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 13/133 (9%)

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           A+ G +  A  LF++MP R+ V+Y SM+  L+ HG   +A +LFD M S     + V++ 
Sbjct: 29  ARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSR----NAVSWN 84

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--CMVDLLGRTGHLKSAYELLNSM 494
            ++ A S  G V D    F+ M       PS + ++   MV    R G L+ A ++L+ M
Sbjct: 85  AMIAALSDHGRVADARGLFDRM-------PSRDDFSWTVMVSCYARAGELELARDVLDRM 137

Query: 495 PVEPHASAWGALL 507
           P +   + + A++
Sbjct: 138 PGDKCTACYNAMI 150


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 259/456 (56%), Gaps = 42/456 (9%)

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   +R G DED FVGT+L+  Y   + ++ AR+VFD MPER++V+W  M+  Y +  + 
Sbjct: 16  HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNY 75

Query: 219 VEAKTVFDLMPERSNV---------------------------SW-------------NA 238
            E   + + M +RS V                           S+             +A
Sbjct: 76  RETLLLLNKM-KRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSA 134

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
           LI       D+  A +++  M  +++VS T M+ GYAK G +  ARS+F    ++DVV+W
Sbjct: 135 LINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSW 194

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           SA+IS YA+N QP E + +F+ M    V PDE  ++S++SAC+ +G+LD + W+ S +  
Sbjct: 195 SAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVG- 253

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
           +H       +  AL+DM +KCG++  A  +F  MP ++V+++ SMI   ++HG G  A++
Sbjct: 254 NHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALT 313

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF +M  EG+ P+ V F ++L AC H GLV +G   FE M   Y I P  EHY CMVDL+
Sbjct: 314 LFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLM 373

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR   ++ A +L+ SM + P+ + WG+LL AC ++ DIELGE  A ++ EL+P + G+YV
Sbjct: 374 GRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYV 433

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LLSNI+A +  W +   +R  MK  G+ K  G S L
Sbjct: 434 LLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWL 469



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 176/396 (44%), Gaps = 43/396 (10%)

Query: 57  HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSR 116
           H   ++ G ++D   V   +   ++    ++ +  VF+ +   +   W  +L  Y     
Sbjct: 16  HGIAVRVGADED-GFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQN 74

Query: 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176
           + E   +  ++ R   VPD+     V+  C H   +R G  IH+ +    +  D  + ++
Sbjct: 75  YRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSA 134

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           LI++Y    ++  A K++  M  +++VS TAM+ GYA  G +  A+++F+ M E+  VSW
Sbjct: 135 LINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSW 194

Query: 237 NALIGGLVKIGDLRSARQLF----------DEMPERNVVSY------------------- 267
           +A+I    +         LF          DE+   +V+S                    
Sbjct: 195 SAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGN 254

Query: 268 ----------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
                       +ID ++K G +T A ++F A P ++V+ W+++I+ +A +G    A+ +
Sbjct: 255 HGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTL 314

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           F  M  + V+P+    + L+ AC   G + +  +  +  L    ++    H    +VD+ 
Sbjct: 315 FGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHY-GCMVDLM 373

Query: 377 AKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHG 411
            +   M  A +L E+M  R +V  + S++    +HG
Sbjct: 374 GRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHG 409


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 278/485 (57%), Gaps = 37/485 (7%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHV 149
           ++F+R+   N   W  ++ GY +   F + F +F+R+ +E  V  +  T  ++ KAC   
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +  REG+ IH  V R  ++ D+F+G SL+ +Y K                          
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSK-------------------------- 322

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
                +G + EAK VF +M  + +VSWN+LI GLV+   +  A +LF++MP +++VS+T 
Sbjct: 323 -----LGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTD 377

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           MI G++  G+++    LF   P++D + W+A+IS +  NG  +EA+  F  M  K V P+
Sbjct: 378 MIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPN 437

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAE 387
            +   S++SA + + +L     +   + + ++  DLS   V  +LV M  KCGN + A +
Sbjct: 438 SYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS---VQNSLVSMYCKCGNTNDAYK 494

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  +   ++VSY +MI G S +G G++A+ LF  + S G  P+ V F  +L+AC HVG 
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V+ GW++F++M++ Y I P P+HYACMVDLLGR+G L  A  L+++MP +PH+  WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            A K +  ++L EL A +L ELEP +A  YV+LS +Y+   +  D   + +  K + ++K
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674

Query: 568 IPGCS 572
            PG S
Sbjct: 675 DPGSS 679



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 208/460 (45%), Gaps = 54/460 (11%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           H+    L  + A+F ++ N +   W  ++  Y++N +  + + +F      + +P     
Sbjct: 60  HARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVF------DEMP----- 108

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
                       VR  T+ +A +            T++I     + ++  A ++F ++PE
Sbjct: 109 ------------VRVTTSYNAMI------------TAMIK---NKCDLGKAYELFCDIPE 141

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFD 257
           +N VS+  MI G+   G   EA+ ++   P   R +V+ N L+ G ++ G    A ++F 
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQ 201

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
            M  + VVS ++M+ GY K+G +  ARSLF+   +R+V+ W+A+I GY + G  ++   +
Sbjct: 202 GMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL 261

Query: 318 FSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           F  M  + +V+ +   L  +  AC         + +   +SR  ++     +  +L+ M 
Sbjct: 262 FLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFD-LFLGNSLMSMY 320

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           +K G M  A  +F  M N+D VS+ S+I GL       +A  LF++M  +    D V++T
Sbjct: 321 SKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK----DMVSWT 376

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-- 494
            ++   S  G +      F  M     I      +  M+      G+ + A    + M  
Sbjct: 377 DMIKGFSGKGEISKCVELFGMMPEKDNIT-----WTAMISAFVSNGYYEEALCWFHKMLQ 431

Query: 495 -PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
             V P++  + ++L A    +D+  G  +  R+ ++   N
Sbjct: 432 KEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 10/229 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S    +F  +   +   W  ++  +  N  + E    F +++++E  P+ YTF  V+ A
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + +  + EG  IH  V++  +  D+ V  SL+ +Y K    + A K+F  + E N+VS+
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             MI GY+  G   +A  +F ++     E + V++ AL+   V +G +    + F  M  
Sbjct: 508 NTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKS 567

Query: 262 RNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISG 304
              +      Y  M+D   + G +  A +L    P +     W +L+S 
Sbjct: 568 SYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSA 616


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 295/525 (56%), Gaps = 10/525 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH+ ++K G E+   +    ISL   L   L  +  VF+++   +   WN+++ GY +N
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGM-LRDARDVFDKMEIRDWVTWNSMIAGYVRN 273

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            + +EVF IF ++      P   TF  VIK+C+ +  +     +    ++ G   D  V 
Sbjct: 274 GQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVI 333

Query: 175 TSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-- 231
           T+L+    K KE+  A  +F  M E +NVVSWTAMI G    G   +A  +F  M     
Sbjct: 334 TALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGV 393

Query: 232 --SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
             ++ +++A++     +       ++     ER+    T ++D Y K+G+   A  +FE 
Sbjct: 394 KPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEI 453

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC-SQVGNLDL 348
              +D++AWSA+++GYAQ G+ +EA K+F  +  + ++P+EF   S+++AC S     + 
Sbjct: 454 IEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQ 513

Query: 349 SNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                +Y  +  M L+ A  ++ ALV M AK GN+D A E+F+    RD+VS+ SMI G 
Sbjct: 514 GKQFHAYAIK--MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           S HG  ++A+ +FD M    +  D V F  V+TAC+H GLVE G ++F +M N + I P+
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            +HY+CM+DL  R G L+ A  ++N MP  P A+ W  LLGA +++ ++ELGEL A +L 
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLI 691

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            L+P+++ +YVLLSN+YA A  W +   VR  M +R ++K PG S
Sbjct: 692 SLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYS 736



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 185/346 (53%), Gaps = 12/346 (3%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           N LL  YS++ +  E   +FV L+     PD+ T   V   C+  L  + G  +H   ++
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DL 218
           +G+ + V VGTSL+D+Y K + ++  R+VFDEM ERNVVSWT+++ GY+  G      +L
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 219 VEAKTVFDLMPERSNVSW--NALIG-GLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
                   ++P R  VS    AL+  G+V IG L+    +     E  +  + ++I  Y+
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIG-LQVHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           ++G +  AR +F+    RD V W+++I+GY +NGQ  E  +IF+ M    V+P      S
Sbjct: 241 RLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFAS 300

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PN 394
           ++ +C+ +  L L   +     +S     +  VI AL+   +KC  MD A  LF  M   
Sbjct: 301 VIKSCASLRELALVKLMQCKALKSGFTTDQI-VITALMVALSKCKEMDDALSLFSLMEEG 359

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           ++VVS+ +MI G   +G   QAV+LF +M  EG+ P+   ++ +LT
Sbjct: 360 KNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 8/243 (3%)

Query: 283 ARSLFEAAPDRDVV--AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
           A +LF+  P R       + L+  Y+++ Q  EA+ +F  +   ++QPDE  L  + + C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 341 SQVGNLD--LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           +  G+LD  L   V     +  + +    V  +LVDM  K  N++    +F+ M  R+VV
Sbjct: 104 A--GSLDGKLGRQVHCQCVKFGL-VDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVV 160

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+ S++ G S +G       LF +M  EG+ P+    + V+ A  + G+V  G +   AM
Sbjct: 161 SWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAM 219

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              +    +   +  ++ L  R G L+ A ++ + M +    +    + G  +   D+E+
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279

Query: 519 GEL 521
            E+
Sbjct: 280 FEI 282


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/517 (33%), Positives = 280/517 (54%), Gaps = 41/517 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   +   W  ++ GY++  +  E   +F ++  E  VPDK     V+ AC+ + +
Sbjct: 215 LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 274

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +   I   + R     DV +GT++ID+Y K   +  AR++FD M E+NV+SW+AMI  
Sbjct: 275 MHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAA 334

Query: 212 YASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE---- 261
           Y   G   +A  +F +M      P++  ++  +L+   +   +L   RQ+  +       
Sbjct: 335 YGYHGQGRKALDLFRMMLSSGMLPDK--ITLASLLYACINCRNLTQVRQVHAQASVHGML 392

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG------------ 309
           +N++    ++  Y+    +  A  LF+    RD V+WS ++ G+A+ G            
Sbjct: 393 QNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 452

Query: 310 -----QPD-----------EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
                +PD           E++ +F  M  + V PD+  +V+++ AC+++G +  +  +D
Sbjct: 453 IRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 512

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            Y+ R    L    +  A++DM+AKCG ++ A E+F+ M  ++V+S+ +MI     HG G
Sbjct: 513 DYIQRKKFQLD-VILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQG 571

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
           R+A+ LF  ML  G+ P+++    +L ACSH GLVE+G RFF  M   Y++    +HY C
Sbjct: 572 RKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTC 631

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           +VDLLGR G L  A +L+ SM VE     WGA LGAC+ + D+ L E  A  L EL+PQN
Sbjct: 632 VVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQN 691

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
            G Y+LLSNIYA A RW DV   R  M +R L+KIPG
Sbjct: 692 PGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPG 728



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 245/512 (47%), Gaps = 64/512 (12%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           P   +SAL     C+  T + QVH+     G+ ++  +VA+ +   +S    L  +  +F
Sbjct: 81  PKFYISALV---NCRNLTQVRQVHAQASVHGMLEN-IVVANKLIYFYSYYRALDDAYGLF 136

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
           + +   ++  W+ ++ G+++   +I  F  F  LIR  A PD YT P VI+AC  + +++
Sbjct: 137 DGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQ 196

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
                                 +L+D+Y K +EI  AR +FD+M ER++V+WT MI GYA
Sbjct: 197 ---------------------MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 235

Query: 214 SVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVV 265
             G   E+  +F+ M E       V+   ++    K+G +  AR + D +  +    +V+
Sbjct: 236 ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVI 295

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             T MID YAK G + SAR +F+   +++V++WSA+I+ Y  +GQ  +A+ +F  M S  
Sbjct: 296 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSG 355

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           + PD+  L SL+ AC    NL     V +  S  H  L    V   LV   +    +D A
Sbjct: 356 MLPDKITLASLLYACINCRNLTQVRQVHAQAS-VHGMLQNLIVANKLVHFYSYYRALDDA 414

Query: 386 AELFETMPNRDVVSYCSMIKG----------------------------LSIHGHGRQAV 417
             LF+ M  RD VS+  M+ G                            L   G+  +++
Sbjct: 415 YGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESL 474

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LFD+M  EG+ PD+VA   V+ AC+ +G +       + +Q     +      A M+D+
Sbjct: 475 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA-MIDM 533

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
             + G ++SA E+ + M  E +  +W A++ A
Sbjct: 534 HAKCGCVESAREIFDRME-EKNVISWSAMIAA 564



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 160/378 (42%), Gaps = 55/378 (14%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
            P    L S L     C+  T + QVH+     G+ Q+  +VA+ +   +S    L  + 
Sbjct: 357 LPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQN-LIVANKLVHFYSYYRALDDAY 415

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL--------- 141
            +F+ +   ++  W+ ++ G+++   ++  F  F  LIR  A PD YT P          
Sbjct: 416 GLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLV 475

Query: 142 -------------------VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
                              V+ AC+ + ++ +   I   + R     DV +GT++ID++ 
Sbjct: 476 LFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHA 535

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALI 240
           K   +  AR++FD M E+NV+SW+AMI  Y   G   + +   DL P   RS +  N + 
Sbjct: 536 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG---QGRKALDLFPMMLRSGILPNKIT 592

Query: 241 ----------GGLVKIGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEA 289
                      GLV+ G LR    ++++   R +V  YT ++D   + G +  A  L E+
Sbjct: 593 LVSLLYACSHAGLVEEG-LRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIES 651

Query: 290 AP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQVGNLD 347
              ++D   W A +     +     A K  + +     Q P  +IL+S + A       +
Sbjct: 652 MTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYA-------N 704

Query: 348 LSNWVDSYLSRSHMDLSR 365
              W D   +R  M   R
Sbjct: 705 AGRWEDVAKTRDLMSQRR 722


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/535 (32%), Positives = 283/535 (52%), Gaps = 26/535 (4%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            Q+H++  K G   +  +    ++L   C  + T L+Y    F      N  LWN +L  
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNY----FLETEVENVVLWNVMLVA 447

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           Y         F IF ++  EE VP++YT+P ++K C  +  +  G  IH+ +I+     +
Sbjct: 448 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLN 507

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            +V + LID+Y K  ++  A  +      ++VVSWT MI GY       +A T F  M +
Sbjct: 508 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 567

Query: 231 RS----NVSWNALIGGLVKIGDLRSARQLF---------DEMPERNVVSYTTMIDGYAKV 277
           R      V     +     +  L+  +Q+           ++P +N      ++  Y+K 
Sbjct: 568 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN-----ALVTLYSKC 622

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G++  A   FE     D +AW+AL+SG+ Q+G  +EA+++F+ M  + +  + F   S +
Sbjct: 623 GNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAV 682

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
            A S+  N+     V + ++++  D S   V  A++ M AKCG++  A + F  +  ++ 
Sbjct: 683 KAASETANMKQGKQVHAVITKTGYD-SETEVCNAIISMYAKCGSISDAKKQFLELSMKNE 741

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ +MI   S HG G +A+  FD+M+   + P+ V    VL+ACSH+GLV+ G  +FE+
Sbjct: 742 VSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFES 801

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M   Y + P PEHY C+VD+L R G L  A + +  MP+EP A  W  LL AC ++ ++E
Sbjct: 802 MNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNME 861

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +GE  A+ L ELEP+++ +YVLLSN+YA   +W    L R KMKE+G++K PG S
Sbjct: 862 IGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQS 916



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 224/492 (45%), Gaps = 24/492 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P    S L+  KK +      Q+H  ++K G   D  +    +SL   L + +S +  
Sbjct: 269 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLIS-AEH 327

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +   +NTL+ G SQ     +   +F R+  +   PD  T   ++ ACS   +
Sbjct: 328 IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGT 387

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA   + G   +  +  +L++LY K  +I  A   F E    NVV W  M+V 
Sbjct: 388 LFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVA 447

Query: 212 YASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLFDEMP----ERN 263
           Y  + DL  +  +F  M     V    ++ +++   +++GDL    Q+  ++     + N
Sbjct: 448 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLN 507

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
               + +ID YAK+G + +A  +      +DVV+W+ +I+GY Q    D+A+  F  M  
Sbjct: 508 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 567

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + ++ DE  L + +SAC+ +  L     + +    S    S      ALV + +KCGN++
Sbjct: 568 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS-SDLPFQNALVTLYSKCGNIE 626

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A   FE     D +++ +++ G    G+  +A+ +F RM  EG+  +   F   + A S
Sbjct: 627 EAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAAS 686

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPS----PEHYAC--MVDLLGRTGHLKSAYELLNSMPVE 497
               ++ G       + V+A++       E   C  ++ +  + G +  A +    + ++
Sbjct: 687 ETANMKQG-------KQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMK 739

Query: 498 PHASAWGALLGA 509
              S W A++ A
Sbjct: 740 NEVS-WNAMINA 750



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 216/465 (46%), Gaps = 12/465 (2%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           + Q+H+ II +GL +   +    I L +S    +  +  VF+ +   +   W  ++ G S
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDL-YSRNGFVDRARRVFDGLYLKDHSSWVAMISGLS 247

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           +N   +E   +F  +     +P  Y F  V+ AC  + S+  G  +H  V++ G   D +
Sbjct: 248 KNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP--- 229
           V  +L+ LY     +  A  +F  M +R+ V++  +I G +  G   +A  +F  M    
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG 367

Query: 230 -ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSAR 284
            E  + +  +L+      G L S +QL     +    S       +++ YAK  D+ +A 
Sbjct: 368 LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETAL 427

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
           + F      +VV W+ ++  Y        + +IF  M  + + P+++   S++  C ++G
Sbjct: 428 NYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           +L+L   + S + ++   L+ A+V + L+DM AK G +D A ++      +DVVS+ +MI
Sbjct: 488 DLELGEQIHSQIIKTSFQLN-AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI 546

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G + +    +A++ F +ML  G+  DEV  T  ++AC+ +  +++G +   A   V   
Sbjct: 547 AGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGF 605

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                    +V L  + G+++ AY          +  AW AL+  
Sbjct: 606 SSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNI-AWNALVSG 649



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 213/458 (46%), Gaps = 49/458 (10%)

Query: 134 PDKYTFPLVIKACSHVL-SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           P+  T   +++ C     S+ EG  +H+ +++ G D +  +   L+D Y  + ++  A K
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALK 124

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN---------ALIGGL 243
           VFDEMPER + +W  MI   AS     +   +F  M    NV+ N         A  GG 
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNE-NVTPNEGTFSGVLEACRGGS 183

Query: 244 VKIGDLRS--ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
           V    +    AR ++  + +  +V    +ID Y++ G +  AR +F+    +D  +W A+
Sbjct: 184 VAFDVVEQIHARIIYQGLGKSTIVC-NPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ISG ++N    EA+++F DM    + P  +   S++SAC ++ +L++   +   + +   
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 302

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
             S  +V  ALV +    G++  A  +F  M  RD V+Y ++I GLS  G+G +A+ LF 
Sbjct: 303 S-SDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE---------------AMQNVYAIVP 466
           RM  +GL PD      ++ ACS  G +  G +                  A+ N+YA   
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCS 421

Query: 467 SPEH---------------YACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALLG 508
             E                +  M+   G    L++++ +   M +E   P+   + ++L 
Sbjct: 422 DIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 481

Query: 509 ACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYA 545
            C    D+ELGE + +++ +   Q NA    +L ++YA
Sbjct: 482 TCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYA 519



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 214/452 (47%), Gaps = 24/452 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++HS I+K G + +  L    +   +     L  +  VF+ +     F WN ++K  +  
Sbjct: 89  KLHSQILKLGFDNNACLSEKLLDF-YLFKGDLDGALKVFDEMPERTIFTWNKMIKELASR 147

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC---SHVLSVREGTAIHAAVIRWGVDEDV 171
           S   +VF +F R++ E   P++ TF  V++AC   S    V E   IHA +I  G+ +  
Sbjct: 148 SLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVE--QIHARIIYQGLGKST 205

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------ 225
            V   LIDLY +   +  AR+VFD +  ++  SW AMI G +     VEA  +F      
Sbjct: 206 IVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVL 265

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMT 281
            +MP  +  ++++++    KI  L    QL   + +    S T     ++  Y  +G + 
Sbjct: 266 GIMP--TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLI 323

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SA  +F     RD V ++ LI+G +Q G  ++A+++F  M    ++PD   L SL+ ACS
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
             G L     + +Y ++     S   +  AL+++ AKC +++ A   F      +VV + 
Sbjct: 384 SDGTLFSGQQLHAYTTKLGF-ASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWN 442

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            M+    +    R +  +F +M  E + P++  +  +L  C  +G +E G +    +   
Sbjct: 443 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 502

Query: 462 YAIVPSPEHYAC--MVDLLGRTGHLKSAYELL 491
              + +   Y C  ++D+  + G L +A+++L
Sbjct: 503 SFQLNA---YVCSVLIDMYAKLGKLDTAWDIL 531



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 29/214 (13%)

Query: 326 VQPDEFILVSLMSACSQV-GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           ++P+   L  L+  C +  G+LD    + S + +   D + A +   L+D     G++D 
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFD-NNACLSEKLLDFYLFKGDLDG 121

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A ++F+ MP R + ++  MIK L+      +   LF RM++E +TP+E  F+ VL AC  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-- 179

Query: 445 VGLVEDGWRFFEAMQNVYA-----------IVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
                 G   F+ ++ ++A           IV +P     ++DL  R G +  A  + + 
Sbjct: 180 ----RGGSVAFDVVEQIHARIIYQGLGKSTIVCNP-----LIDLYSRNGFVDRARRVFDG 230

Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
           + ++ H+S    + G  K   ++E     A RLF
Sbjct: 231 LYLKDHSSWVAMISGLSKNECEVE-----AIRLF 259


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 305/584 (52%), Gaps = 55/584 (9%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA---VFNR 95
            +L L++ C  +    QV + I++  L  D   ++  I    ++  P +   A     N 
Sbjct: 36  QSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLI-FFSAITYPENLDLAKLLFLNF 94

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
             NPN F++NT++   S +    E F ++  +IR    PD+ TF  ++KA S +  V++ 
Sbjct: 95  TPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQ- 151

Query: 156 TAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
             IH  +I  G +    ++  SL+  Y +      A KVF  MP  +V S+  MIVGYA 
Sbjct: 152 --IHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAK 209

Query: 215 VGDLVEAKTVFDLM------PERSNV--------------------SW------------ 236
            G  +EA  ++  M      P+   V                     W            
Sbjct: 210 QGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNL 269

Query: 237 ---NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
              NAL+    K  +   A++ FD M ++++ S+ TM+ G+ ++GDM +A+++F+  P R
Sbjct: 270 ILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKR 329

Query: 294 DVVAWSALISGYAQNGQPDEAVK-IFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           D+V+W++L+ GY++ G     V+ +F +M   + V+PD   +VSL+S  +  G L    W
Sbjct: 330 DLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRW 389

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           V   + R  +    A + +AL+DM  KCG ++RA  +F+T   +DV  + SMI GL+ HG
Sbjct: 390 VHGLVIRLQLK-GDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHG 448

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
           +G+QA+ LF RM  EG+TP+ V    VLTACSH GLVE+G   F  M++ +   P  EHY
Sbjct: 449 NGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHY 508

Query: 472 ACMVDLLGRTGHLKSAYELLN-SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
             +VDLL R G ++ A +++   MP+ P  S WG++L AC+   DIE  EL    L +LE
Sbjct: 509 GSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLE 568

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           P+  G YVLLSNIYAT  RW      R  M+ RG++K  G SS+
Sbjct: 569 PEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/530 (34%), Positives = 296/530 (55%), Gaps = 16/530 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+HS IIKK    +  +    I + ++ A  L  +   F  +   +   WN ++ GY Q 
Sbjct: 339 QLHSAIIKKRFTSNLFVNNALIDM-YAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQE 397

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                 F++F R+I +  VPD+ +   ++ AC ++  +  G   H   ++ G++ ++F G
Sbjct: 398 EVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAG 457

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG-----DLVEAKTVFDLMP 229
           +SLID+Y K  +I  A K +  MPER+VVS  A+I GYA        +L+    +  L P
Sbjct: 458 SSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKESINLLHEMQILGLKP 517

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMTSAR 284
             S +++ +LI        +    Q+   + +R ++       T+++  Y     +  A 
Sbjct: 518 --SEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADAN 575

Query: 285 SLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            LF E +  + +V W+ALISG+ QN   D A+ ++ +M   N+ PD+   V+++ AC+ +
Sbjct: 576 ILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALL 635

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCS 402
            +L     + S +  +  DL      +ALVDM AKCG++  + ++FE +  + DV+S+ S
Sbjct: 636 SSLHDGREIHSLIFHTGFDLDEL-TSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNS 694

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G + +G+ + A+ +FD M    +TPD+V F  VLTACSH G V +G + F+ M N Y
Sbjct: 695 MIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYY 754

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P  +HYACMVDLLGR G LK A E ++ + VEP+A  W  LLGAC+++ D + G+  
Sbjct: 755 GIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRA 814

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A +L ELEPQ++  YVLLSN+YA +  W +   +R  M ++ ++KIPGCS
Sbjct: 815 AKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCS 864



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 207/469 (44%), Gaps = 80/469 (17%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN  ++G    S    V   +   +     PD++TF + + AC+ + ++  G A+H+ VI
Sbjct: 16  WNWRVQGTKHYSSE-RVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVI 74

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEA 221
           + G++   F   +LI LY K   ++CAR +F     P  + VSWTA+I GY   G   EA
Sbjct: 75  KSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEA 134

Query: 222 KTVFDLMPERS---NVSWNALIGGLVKIGDLRSARQLFDEM--PERNVVSYTTMIDGYAK 276
             +FD M   +    V+   ++   + +G L  A QLF +M  P RNVV++  MI G+AK
Sbjct: 135 LHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAK 194

Query: 277 VGDMTSARSLF---------------------------------------EAAPDRDVVA 297
                 A + F                                       +   +  +  
Sbjct: 195 TAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYV 254

Query: 298 WSALISGYAQNGQPDEAVKIFS-------------------------------DMCSKNV 326
            S+LI+ Y +   PD+A ++F                                DM S  +
Sbjct: 255 ASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGI 314

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
            PDEF   S++S C+    L++   + S + +     S   V  AL+DM AK G +  A 
Sbjct: 315 HPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFT-SNLFVNNALIDMYAKAGALKEAG 373

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
           + FE M  RD +S+ ++I G         A SLF RM+ +G+ PDEV+   +L+AC ++ 
Sbjct: 374 KHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIK 433

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
           ++E G + F  +     +  +    + ++D+  + G +K A++  +SMP
Sbjct: 434 VLEAGQQ-FHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMP 481



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 227/486 (46%), Gaps = 20/486 (4%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S L S L+ I       H   VH+H IK+G E    + +  I++      P   +  VF+
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMP-DDARQVFD 276

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
            I   N  +WN +L  YSQN     V  +F+ +I     PD++T+  ++  C+    +  
Sbjct: 277 AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEV 336

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H+A+I+     ++FV  +LID+Y K   +  A K F+ M  R+ +SW A+IVGY  
Sbjct: 337 GRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGY-- 394

Query: 215 VGDLVEA-------KTVFD-LMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPER 262
           V + VEA       + + D ++P+   VS  +++     I  L + +Q          E 
Sbjct: 395 VQEEVEAGAFSLFRRMILDGIVPDE--VSLASILSACGNIKVLEAGQQFHCLSVKLGLET 452

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           N+ + +++ID Y+K GD+  A   + + P+R VV+ +ALI+GYA      E++ +  +M 
Sbjct: 453 NLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKESINLLHEMQ 511

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
              ++P E    SL+  C     + L   +   + +  +      +  +L+ M      +
Sbjct: 512 ILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRL 571

Query: 383 DRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
             A  LF    + + +V + ++I G   +     A++L+  M    ++PD+  F  VL A
Sbjct: 572 ADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQA 631

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+ +  + DG R   ++             + +VD+  + G +KS+ ++   +  +    
Sbjct: 632 CALLSSLHDG-REIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVI 690

Query: 502 AWGALL 507
           +W +++
Sbjct: 691 SWNSMI 696



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 175/351 (49%), Gaps = 10/351 (2%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   WN ++ G+++ + + E    F ++ +      + T   V+ A + + ++  G  +H
Sbjct: 181 NVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVH 240

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A  I+ G +  ++V +SLI++YGK +    AR+VFD + ++N++ W AM+  Y+  G L 
Sbjct: 241 AHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLS 300

Query: 220 EAKTVF-DLMP---ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMI 271
               +F D++         ++ +++        L   RQL   + ++    N+     +I
Sbjct: 301 NVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALI 360

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D YAK G +  A   FE    RD ++W+A+I GY Q      A  +F  M    + PDE 
Sbjct: 361 DMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEV 420

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            L S++SAC  +  L+          +  ++ +     ++L+DM +KCG++  A + + +
Sbjct: 421 SLASILSACGNIKVLEAGQQFHCLSVKLGLE-TNLFAGSSLIDMYSKCGDIKDAHKTYSS 479

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           MP R VVS  ++I G ++  + +++++L   M   GL P E+ F  ++  C
Sbjct: 480 MPERSVVSVNALIAGYALK-NTKESINLLHEMQILGLKPSEITFASLIDVC 529


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 304/573 (53%), Gaps = 42/573 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L L    K  T   +VHS I    +  D +L    +S  ++    L     VF+ +  
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSF-YATCGDLKEGRRVFDTMEK 162

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY---TFPLVIKACSH-VLS--- 151
            N +LWN ++  Y++   F E   +F +++ E+ +  K     F L  K C   V+S   
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLF-KIMVEKGIEGKRPESAFELFDKLCDRDVISWNS 221

Query: 152 ----------VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV----FDEM 197
                        G  I+  ++  G+D D+    S++        +S  + V        
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            ER +     ++  Y+  GDL  A  VF+ M ER+ VSW ++I G  + G    A +L  
Sbjct: 282 FERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 258 EMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAP----DRDVVAWSALISGYAQNG 309
           +M +     +VV+ T+++   A+ G + + + + +       + ++   +AL+  YA+ G
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCG 401

Query: 310 QPDEAVKIFSDMCSKNV----------QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
             + A  +FS M  K++          +PD   +  ++ AC+ +  L+    +  Y+ R+
Sbjct: 402 SMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRN 461

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
                R HV  ALVD+  KCG +  A  LF+ +P++D+VS+  MI G  +HG+G +A++ 
Sbjct: 462 GYSSDR-HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F+ M   G+ PDEV+F  +L ACSH GL+E GWRFF  M+N + I P  EHYACMVDLL 
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           RTG+L  AYE + ++P+ P A+ WGALL  C+ Y DIEL E VA R+FELEP+N+G YVL
Sbjct: 581 RTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVL 640

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+NIYA A++W +V  +R K+ ++GLRK PGCS
Sbjct: 641 LANIYAEAEKWEEVKRLREKIGKQGLRKNPGCS 673



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 193/433 (44%), Gaps = 87/433 (20%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  V++ C+ + S  +G  +H+ +    V  D  +G  L+  Y    ++   R+VFD M
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--------------------RSNVSWN 237
            ++NV  W  M+  YA +GD  E+  +F +M E                    R  +SWN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 238 ALIGGLVKIGDLRSARQLFDEMP------------------------------------- 260
           ++I G V  G       ++ +M                                      
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 261 --ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             ER +    T++D Y+K GD+  A  +FE   +R+VV+W+++I+GY ++G+ D A+K+ 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M  + V+ D   + S++ AC++ G+LD    V  Y+  ++M+ S   V  AL+DM AK
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME-SNLFVCNALMDMYAK 399

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG+M+ A  +F TM  +D++S+ +MI  L                      PD      V
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACV 438

Query: 439 LTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPV 496
           L AC+ +  +E G       ++N Y+   S  H A  +VDL  + G L  A  L + +P 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYS---SDRHVANALVDLYVKCGVLGLARLLFDMIPS 495

Query: 497 EPHASAWGALLGA 509
           +   S W  ++  
Sbjct: 496 KDLVS-WTVMIAG 507


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 280/492 (56%), Gaps = 19/492 (3%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  +F +I NPN   W T+L G ++  +  E   +F R+  +  V    ++  +I  
Sbjct: 220 LSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVV----SWNAMIAT 275

Query: 146 CSHVLSVREGTAI-----HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
               L V E   +     H   + W         T++I+ Y +  ++  AR+V+++MP +
Sbjct: 276 YVQDLQVDEAVKLFKKMPHKDSVSW---------TTIINGYIRVGKLDEARQVYNQMPCK 326

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           ++ + TA++ G    G + EA  +F  +     V WN++I G  + G +  A  LF +MP
Sbjct: 327 DITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMP 386

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            +N VS+ TMI GYA+ G M  A  +F+A  ++++V+W++LI+G+ QN    +A+K    
Sbjct: 387 IKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVM 446

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  +  +PD+      +SAC+ +  L + N +  Y+ +S   ++   V  AL+ M AKCG
Sbjct: 447 MGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGY-MNDLFVGNALIAMYAKCG 505

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  A ++F  +   D++S+ S+I G +++G+  +A   F++M SE + PDEV F  +L+
Sbjct: 506 RVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLS 565

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH GL   G   F+ M   +AI P  EHY+C+VDLLGR G L+ A+  +  M V+ +A
Sbjct: 566 ACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANA 625

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             WG+LLGAC+++ ++ELG   A RLFELEP NA +Y+ LSN++A A RW +V  VR  M
Sbjct: 626 GLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLM 685

Query: 561 KERGLRKIPGCS 572
           + +   K PGCS
Sbjct: 686 RGKRAGKQPGCS 697



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 201/420 (47%), Gaps = 64/420 (15%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+++   N   WNT++ GY  N+   E   +F      + +P++  F   +    +   
Sbjct: 70  LFDQMSLRNLVSWNTMIAGYLHNNMVEEASELF------DVMPERDNFSWALMITCYT-- 121

Query: 152 VREGTAIHAAVIRWGVDE--DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            R+G    A  +   V +  D     ++I  Y K+ + + A+KVF++MP +++VS+ +M+
Sbjct: 122 -RKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSML 180

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
            GY   G +  A   F+ M ER+ VSWN ++ G VK GDL SA QLF+++P  N VS+ T
Sbjct: 181 AGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVT 240

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK----- 324
           M+ G AK G M  AR LF+  P ++VV+W+A+I+ Y Q+ Q DEAVK+F  M  K     
Sbjct: 241 MLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSW 300

Query: 325 --------------------NVQP--DEFILVSLMSACSQVGNLDLSN------------ 350
                               N  P  D     +LMS   Q G +D ++            
Sbjct: 301 TTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVV 360

Query: 351 -W---VDSYLSRSHMD----LSRAHVIAALVDMN------AKCGNMDRAAELFETMPNRD 396
            W   +  Y     MD    L R   I   V  N      A+ G MDRA E+F+ M  ++
Sbjct: 361 CWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKN 420

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           +VS+ S+I G   +     A+     M  EG  PD+  F   L+AC+++  ++ G +  E
Sbjct: 421 IVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHE 480



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 162/322 (50%), Gaps = 50/322 (15%)

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            S+I +  K   I  AR++FD+M  RN+VSW  MI GY     + EA  +FD+MPER N 
Sbjct: 52  NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNF 111

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           SW  +I    + G L  AR+L + +P++ +   +  MI GYAK G    A+ +FE  P +
Sbjct: 112 SWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK 171

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D+V+++++++GY QNG+   A++ F  M  +NV       VS         NL ++ +V 
Sbjct: 172 DLVSYNSMLAGYTQNGKMHLALQFFESMTERNV-------VSW--------NLMVAGYV- 215

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
                                   K G++  A +LFE +PN + VS+ +M+ GL+ +G  
Sbjct: 216 ------------------------KSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKM 251

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
            +A  LFDRM S+ +    V++  ++        V++  + F+ M +  ++      +  
Sbjct: 252 AEARELFDRMPSKNV----VSWNAMIATYVQDLQVDEAVKLFKKMPHKDSV-----SWTT 302

Query: 474 MVDLLGRTGHLKSAYELLNSMP 495
           +++   R G L  A ++ N MP
Sbjct: 303 IINGYIRVGKLDEARQVYNQMP 324



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 161/337 (47%), Gaps = 54/337 (16%)

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           I+    +G + EA  +F  M  ++ V++N++I  L K   +R ARQLFD+M  RN+VS+ 
Sbjct: 24  IIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWN 83

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           TMI GY     +  A  LF+  P+RD  +W+ +I+ Y + G+ ++A ++        + P
Sbjct: 84  TMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLE------LVP 137

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D+               LD + W                   A++   AK G  + A ++
Sbjct: 138 DK---------------LDTACW------------------NAMIAGYAKKGQFNDAKKV 164

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           FE MP +D+VSY SM+ G + +G    A+  F+ M    +    V++ +++      G +
Sbjct: 165 FEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV----VSWNLMVAGYVKSGDL 220

Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
              W+ FE + N     P+   +  M+  L + G +  A EL + MP   +  +W A++ 
Sbjct: 221 SSAWQLFEKIPN-----PNAVSWVTMLCGLAKYGKMAEARELFDRMP-SKNVVSWNAMIA 274

Query: 509 ACKLYSDIELGELVANRLFELEP-QNAGSYVLLSNIY 544
                 D+++ E V  +LF+  P +++ S+  + N Y
Sbjct: 275 T--YVQDLQVDEAV--KLFKKMPHKDSVSWTTIINGY 307



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 9/213 (4%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  +  +T +F  +   N   WN+L+ G+ QN+ +++     V + +E   PD+ TF
Sbjct: 400 YAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTF 459

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
              + AC+++ +++ G  +H  +++ G   D+FVG +LI +Y K   +  A +VF ++  
Sbjct: 460 ACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIEC 519

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLM-PER---SNVSWNALIGGLVKIGDLRSARQL 255
            +++SW ++I GYA  G   +A   F+ M  ER     V++  ++      G       +
Sbjct: 520 VDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDI 579

Query: 256 FDEMPERNVVS-----YTTMIDGYAKVGDMTSA 283
           F  M E   +      Y+ ++D   +VG +  A
Sbjct: 580 FKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEA 612


>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like, partial [Cucumis sativus]
          Length = 472

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/446 (38%), Positives = 258/446 (57%), Gaps = 10/446 (2%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           + +TF   +KAC  +   ++G  IHA +I+ G   D+F+  SL+  Y    ++S A  +F
Sbjct: 17  NHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIF 76

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
           D +P+ +VVSWT++I G + +G   EA + F  M  R N +   L+  L     LR  + 
Sbjct: 77  DSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVRPNST--TLVTALSTCSSLRCLKL 134

Query: 255 -------LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
                      + E NV+    ++D Y +   + SA +LFE  P RDVV+W+ +I GYAQ
Sbjct: 135 GKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQ 194

Query: 308 NGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
           +G  +EAV++F +M       P+E  LV+++SACS +  L L  WV SY++  H  +   
Sbjct: 195 SGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDG 254

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
           +V  AL++M  KCGNM+ A  +F+   ++D+VS+ ++I GL+++G G+QA  LF  ML  
Sbjct: 255 NVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVH 314

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           G++PD+V F  +L+ACSH GL+  G   FEAM++VY I P   HYACMVD+ G+ G L  
Sbjct: 315 GISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDE 374

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           A   +  MP+E     WGALL AC+L+ + +  E V   L   +    G++ LLSN YA 
Sbjct: 375 AEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYAC 434

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCS 572
            DRW D   VR  M+ RGL+K+ G S
Sbjct: 435 CDRWNDANDVRVAMRSRGLKKMAGRS 460



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 191/404 (47%), Gaps = 24/404 (5%)

Query: 55  QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           ++H+H+IK G   D    +SL+  +I     L   +S ++ +F+ I +P+   W +++ G
Sbjct: 39  EIHAHLIKSGHLSDIFIQNSLLHFYI-----LDGDVSSASLIFDSIPDPDVVSWTSIISG 93

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            S+     E  + F+ +      P+  T    +  CS +  ++ G AIH   +R   +E+
Sbjct: 94  LSKLGFEKEALSKFLSM---NVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEEN 150

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           V +  +L+D Y +   +  A  +F++MP+R+VVSWT MI GYA  G   EA  VF  M  
Sbjct: 151 VILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVH 210

Query: 231 RSNVSWNA-----LIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDM 280
                 N      ++     I  L   + +   +  R+ V         +I+ Y K G+M
Sbjct: 211 VGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNM 270

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A  +F+A   +D+V+WS +ISG A NG   +A  +FS M    + PD+   + L+SAC
Sbjct: 271 EMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSAC 330

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVS 399
           S  G ++    V   +   +    +    A +VDM  K G +D A    + MP   +   
Sbjct: 331 SHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPV 390

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRML-SEGLTPDEVAFTIVLTAC 442
           + +++    +HG+ ++   + + +L S+G+T    A      AC
Sbjct: 391 WGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYAC 434


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 278/485 (57%), Gaps = 37/485 (7%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHV 149
           ++F+R+   N   W  ++ GY +   F + F +F+R+ +E  V  +  T  ++ KAC   
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +  REG+ IH  V R  ++ D+F+G SL+ +Y K                          
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSK-------------------------- 322

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
                +G + EAK VF +M  + +VSWN+LI GLV+   +  A +LF++MP +++VS+T 
Sbjct: 323 -----LGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTD 377

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           MI G++  G+++    LF   P++D + W+A+IS +  NG  +EA+  F  M  K V P+
Sbjct: 378 MIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPN 437

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAE 387
            +   S++SA + + +L     +   + + ++  DLS   V  +LV M  KCGN + A +
Sbjct: 438 SYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS---VQNSLVSMYCKCGNTNDAYK 494

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  +   ++VSY +MI G S +G G++A+ LF  + S G  P+ V F  +L+AC HVG 
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V+ GW++F++M++ Y I P P+HYACMVDLLGR+G L  A  L+++MP +PH+  WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            A K +  ++L EL A +L ELEP +A  YV+LS +Y+   +  D   + +  K + ++K
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674

Query: 568 IPGCS 572
            PG S
Sbjct: 675 DPGSS 679



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 211/462 (45%), Gaps = 58/462 (12%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           H+    L  + A+F ++ N +   W  ++  Y++N +  + + +F      + +P     
Sbjct: 60  HARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVF------DEMP----- 108

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
                       VR  T+ +A +            T++I     + ++  A ++F ++PE
Sbjct: 109 ------------VRVTTSYNAMI------------TAMIK---NKCDLGKAYELFCDIPE 141

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFD 257
           +N VS+  MI G+   G   EA+ ++   P   R +V+ N L+ G ++ G    A ++F 
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQ 201

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
            M  + VVS ++M+ GY K+G +  ARSLF+   +R+V+ W+A+I GY + G  ++   +
Sbjct: 202 GMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL 261

Query: 318 FSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           F  M  + +V+ +   L  +  AC         + +   +SR  ++     +  +L+ M 
Sbjct: 262 FLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFD-LFLGNSLMSMY 320

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           +K G M  A  +F  M N+D VS+ S+I GL       +A  LF++M  +    D V++T
Sbjct: 321 SKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK----DMVSWT 376

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YACMVDLLGRTGHLKSAYELLNSM 494
            ++   S  G +      F        ++P  ++  +  M+      G+ + A    + M
Sbjct: 377 DMIKGFSGKGEISKCVELF-------GMMPEKDNITWTAMISAFVSNGYYEEALCWFHKM 429

Query: 495 ---PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
               V P++  + ++L A    +D+  G  +  R+ ++   N
Sbjct: 430 LQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S    +F  +   +   W  ++  +  N  + E    F +++++E  P+ YTF  V+ A
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + +  + EG  IH  V++  +  D+ V  SL+ +Y K    + A K+F  + E N+VS+
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             MI GY+  G   +A  +F ++     E + V++ AL+   V +G +    + F  M  
Sbjct: 508 NTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKS 567

Query: 262 RNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
              +      Y  M+D   + G +  A +L    P +     W +L+S
Sbjct: 568 SYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLS 615


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/523 (34%), Positives = 294/523 (56%), Gaps = 44/523 (8%)

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIE--VFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +R+   N F+WNT+++   +N           +++ +R    P+ +TF  ++KA      
Sbjct: 47  SRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE 106

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           V+EG  +HA+V+R G     FV  +L+  Y     +   R+VFDEM +  +V WT +I  
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166

Query: 212 YASV-----------------------------------GDLVEAKTVFDLMPERSNVSW 236
           Y  V                                   GDL  AK +   + E+S +  
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFI-EKSGIEV 225

Query: 237 NA-----LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
           +A     LI    + G L  A + F E P +N+V + TMI    +  ++   + LF++ P
Sbjct: 226 DAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMP 285

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           DRDVV+W+++I G+A+ GQ  EA+  F +M    V P+   L+S +SAC+  G LD   W
Sbjct: 286 DRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAW 345

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           + +Y+ ++ M+     + ++L+DM +KCG++D+A ++FE    RD+ ++ S++ GL++HG
Sbjct: 346 IHAYVDKNDMN-RDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHG 404

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
            G +A+  F +M    + PD+V    VL+AC+H GL++ GW +F++M+ V+ +VP  EHY
Sbjct: 405 RGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY 464

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
             MVDLLGR G LK AY+L+  MP+E +   WGA L AC++++++ELGE+ A RL  L P
Sbjct: 465 GXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXP 524

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++  + V+LSN+YA   +W     +R ++K++GL+K PGCSS+
Sbjct: 525 RDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 170/382 (44%), Gaps = 48/382 (12%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY--- 111
           +VH+ +++ G      +    +   +     +     VF+ +  P   LW  +++ Y   
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGF-YVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCV 170

Query: 112 SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           +   + +E+F    R +RE  + PD      V+ AC  +  +    A+H  + + G++ D
Sbjct: 171 TFPEKALELF----RTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            FV ++LI  YG+   +  A + F E P +N+V W  MI       +L   K +F  MP+
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMP------------------------------ 260
           R  VSWN++IGG  +IG  + A   F EM                               
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 261 ---------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
                     R+    +++ID Y+K GD+  A  +FE +  RD+  W++++ G A +G+ 
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRG 406

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           ++A+  FS M    VQPD+  +V ++SAC+  G LD   W    + +    + +      
Sbjct: 407 EKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGX 466

Query: 372 LVDMNAKCGNMDRAAELFETMP 393
           +VD+  + G +  A +L   MP
Sbjct: 467 MVDLLGRMGCLKEAYDLIMGMP 488



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L     +F  + + +   WN+++ G+++  ++ E  T F  +      P+  T    + A
Sbjct: 274 LELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSA 333

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   ++  G  IHA V +  ++ D  + +SLID+Y K  +I  A ++F+E   R++ +W
Sbjct: 334 CASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTW 393

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE 261
           T+++ G A  G   +A   F  M E      +V+   ++      G L      F  M +
Sbjct: 394 TSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453

Query: 262 -----RNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
                  V  Y  M+D   ++G +  A  L    P + + + W A +S
Sbjct: 454 VFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLS 501



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+++ K  + +D SL +  I + +S    +  +  +F      + F W +++ G + + 
Sbjct: 346 IHAYVDKNDMNRDGSLDSSLIDM-YSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHG 404

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
           R  +    F ++   +  PD  T   V+ AC+H   + +G     ++ + +G+   V   
Sbjct: 405 RGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHY 464

Query: 175 TSLIDLYGKRKEISCARKVFD---EMP-ERNVVSWTAMI 209
             ++DL G+   + C ++ +D    MP E N + W A +
Sbjct: 465 GXMVDLLGR---MGCLKEAYDLIMGMPMEANEIIWGAFL 500


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 289/526 (54%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  +++ GL  D ++    IS+ ++    +  +  VF+ + + +   W TL   Y+++
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISM-YAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAES 208

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E    +  +++E   P + T+  V+ AC  + ++ +G  IHA ++      DV V 
Sbjct: 209 GYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVS 268

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-- 232
           T+L  +Y K      AR+VF+ +  R+V++W  MI G+   G L EA   F  M E    
Sbjct: 269 TALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVA 328

Query: 233 --NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSL 286
               ++  ++    + G L   +++     +  +VS       +I+ Y+K G M  AR +
Sbjct: 329 PDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQV 388

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+  P RDVV+W+ L+  YA   Q  E+   F  M  + V+ ++   + ++ ACS    L
Sbjct: 389 FDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVAL 448

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                + + + ++ + L+   V  AL+ M  KCG+++ A  +FE M  RDVV++ ++I G
Sbjct: 449 KWGKEIHAEVVKAGL-LADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGG 507

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
           L  +G G +A+  ++ M SEG+ P+   F  VL+AC    LVE+G R F  M   Y IVP
Sbjct: 508 LGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVP 567

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + +HYACMVD+L R GHL+ A +++ ++P++P A+ WGALL AC+++ ++E+GE  A   
Sbjct: 568 TEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHC 627

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +LEPQNAG YV LS IYA A  W DV  +R  MKERG++K PG S
Sbjct: 628 LKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRS 673



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 243/511 (47%), Gaps = 53/511 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH HI++ G++ +  +    + L ++    ++ +  +F++  N +   WN ++ GY+  
Sbjct: 49  QVHEHILRCGVKPNVYITNTLLKL-YAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHR 107

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E F +F  + +E   PDK+TF  ++ ACS    +  G  IH  V+  G+  D  VG
Sbjct: 108 GLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVG 167

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLMPER-- 231
            +LI +Y K   +  AR+VFD M  R+ VSWT +   YA  G   E+ KT   ++ ER  
Sbjct: 168 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVR 227

Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSL 286
            S +++  ++     +  L   +Q+   + E     +V   T +   Y K G    AR +
Sbjct: 228 PSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREV 287

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           FE    RDV+AW+ +I G+  +GQ +EA   F  M  + V PD     +++SAC++ G L
Sbjct: 288 FECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGL 347

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                + +  ++  + +S      AL++M +K G+M  A ++F+ MP RDVVS+ +++  
Sbjct: 348 ARGKEIHARAAKDGL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGR 406

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH---------------------- 444
            +      ++ + F +ML +G+  +++ +  VL ACS+                      
Sbjct: 407 YADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLAD 466

Query: 445 -------------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA---Y 488
                         G VED  R FE M     +      +  ++  LG+ G    A   Y
Sbjct: 467 LAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVT-----WNTLIGGLGQNGRGLEALQRY 521

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELG 519
           E++ S  + P+A+ +  +L AC++ + +E G
Sbjct: 522 EVMKSEGMRPNAATFVNVLSACRVCNLVEEG 552



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 194/390 (49%), Gaps = 11/390 (2%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
           L R+    D Y +  ++++C     +  G  +H  ++R GV  +V++  +L+ LY     
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGG 242
           ++ AR++FD+   ++VVSW  MI GYA  G   EA  +F LM     E    ++ +++  
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 243 LVKIGDLRSARQLFDEMPERNVVSYTT----MIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                 L   R++   + E  + + TT    +I  YAK G +  AR +F+A   RD V+W
Sbjct: 139 CSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSW 198

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           + L   YA++G  +E++K +  M  + V+P     ++++SAC  +  L+    + +++  
Sbjct: 199 TTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVE 258

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
           S    S   V  AL  M  KCG    A E+FE +  RDV+++ +MI+G    G   +A  
Sbjct: 259 SEYH-SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHG 317

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
            F RML EG+ PD   +T VL+AC+  G +  G +   A      +V        ++++ 
Sbjct: 318 TFHRMLEEGVAPDRATYTTVLSACARPGGLARG-KEIHARAAKDGLVSDVRFGNALINMY 376

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLG 508
            + G +K A ++ + MP     S W  LLG
Sbjct: 377 SKAGSMKDARQVFDRMPKRDVVS-WTTLLG 405


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 299/572 (52%), Gaps = 33/572 (5%)

Query: 25  RSAPINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHS 81
           R AP N+  P  L       K C      H    +H H I  GL+ D  +    + +   
Sbjct: 120 RVAPNNYTFPFAL-------KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT--IFVRLIREEAVPDKYTF 139
            A  L  +  +F  +   +   WN +L GY+ +  +       + +++      P+  T 
Sbjct: 173 CAC-LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 231

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRW----------GVDEDVFVGTSLIDLYGKRKEISC 189
             ++   +   ++ +GT++HA  IR            + + V +GT+L+D+Y K   +  
Sbjct: 232 VALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 291

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-----SNVSWNALIGGLV 244
           AR+VFD MP RN V+W+A+I G+     + +A  +F  M  +     S  S  + +    
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 351

Query: 245 KIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
            +  LR   QL   + +  V     +  +++  YAK G +  A +LF+    +D V++SA
Sbjct: 352 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 411

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           L+SGY QNG+ +EA  +F  M + NV+PD   +VSL+ ACS +  L         +    
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 471

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           +  S   +  AL+DM AKCG +D + ++F  MP+RD+VS+ +MI G  IHG G++A +LF
Sbjct: 472 LA-SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
             M + G  PD V F  +L+ACSH GLV +G  +F  M + Y + P  EHY CMVDLL R
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 590

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L  AYE + SMP+      W ALLGAC++Y +I+LG+ V+  + EL P+  G++VLL
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 650

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           SNIY+ A R+ +   VR   K +G +K PGCS
Sbjct: 651 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCS 682



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 220/445 (49%), Gaps = 37/445 (8%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS--RFIEVFTIFVRLIREEAVPDKY 137
           H  +  LS +  +F++I +P+   +N L++ YS +S     +   ++ R++R    P+ Y
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           TFP  +KACS +     G AIH   I  G+  D+FV T+L+D+Y K   +  A  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 198 PERNVVSWTAMIVGYA-------SVGDLVEAK-TVFDLMPERSNVSWNALIGGLVKIGDL 249
           P R++V+W AM+ GYA       +V  L+  +  +  L P  S +   AL+  L + G L
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLV--ALLPLLAQQGAL 244

Query: 250 RSARQLFDE------MPERN--------VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                +          P RN        V+  T ++D YAK G +  AR +F+A P R+ 
Sbjct: 245 AQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 304

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKN---VQPDEFILVSLMSACSQVGNLDLSNWV 352
           V WSALI G+    +  +A  +F  M ++    + P    + S + AC+ + +L +   +
Sbjct: 305 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQL 362

Query: 353 DSYLSRS--HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            + L++S  H DL+  +   +L+ M AK G +D+A  LF+ M  +D VSY +++ G   +
Sbjct: 363 HALLAKSGVHADLTAGN---SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 419

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G   +A  +F +M +  + PD      ++ ACSH+  ++ G R       +  +      
Sbjct: 420 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSI 478

Query: 471 YACMVDLLGRTGHLKSAYELLNSMP 495
              ++D+  + G +  + ++ N MP
Sbjct: 479 CNALIDMYAKCGRIDLSRQVFNMMP 503


>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
          Length = 599

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/474 (35%), Positives = 262/474 (55%), Gaps = 71/474 (14%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCA 190
           P+ +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +      +  A
Sbjct: 107 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGGDVFVQNALMDVYYRCGGAGGVGAA 166

Query: 191 RKVFDEM-------------------------------PERNVVSWTAMIVGYASVGDLV 219
           R+VFD+M                               PERNVVSW  ++ G+A  GD+V
Sbjct: 167 RQVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAGDMV 226

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A+TVFD MP R+ VSWN +I G    GD+ +A  +FD M +++VVS+T M+  YAK+GD
Sbjct: 227 TARTVFDRMPSRNAVSWNLMISGYATSGDVEAAHSVFDRMDQKDVVSWTAMVSAYAKIGD 286

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSLMS 338
           + +A+ LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LVS++S
Sbjct: 287 LDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 346

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G+++  NW+ S++ +S + L+ A +  AL+DM AKCG++ RA   F  M  R ++
Sbjct: 347 ACAQLGSVEYCNWIGSFIGKSKIHLTVA-LGNALIDMFAKCGDVGRAQSFFYEMKTRCII 405

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ +MI G + +G  R+A+ +++ M  EG+  D+  F   L AC+H GL+++GW  F  M
Sbjct: 406 TWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAALAACAHGGLLQEGWSIFNEM 465

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              Y I P  EHY CMVDLLGR                                    EL
Sbjct: 466 VKQYNIQPRMEHYGCMVDLLGRA-----------------------------------EL 490

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            E V+N++ +LEP N    VL+SN  A   RW  V   R+ M+  G+ K+PG S
Sbjct: 491 IEYVSNKITKLEPFNPSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSS 544



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 10/197 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIK 144
           L  +  +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ 
Sbjct: 287 LDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 346

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +  +   V +G +LID++ K  ++  A+  F EM  R +++
Sbjct: 347 ACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALIDMFAKCGDVGRAQSFFYEMKTRCIIT 406

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT MI G+A  G   EA  V++ M     E  +  + A +      G L+    +F+EM 
Sbjct: 407 WTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAALAACAHGGLLQEGWSIFNEMV 466

Query: 261 ERNVVS-----YTTMID 272
           ++  +      Y  M+D
Sbjct: 467 KQYNIQPRMEHYGCMVD 483


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 300/572 (52%), Gaps = 33/572 (5%)

Query: 25  RSAPINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHS 81
           R AP N+  P  L       K C      H    +H H I  GL+ D  +    + +   
Sbjct: 120 RVAPNNYTFPFAL-------KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK 172

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT--IFVRLIREEAVPDKYTF 139
            A  L  +  +F  +   +   WN +L GY+ +  +       + +++      P+  T 
Sbjct: 173 CAC-LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 231

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRW----------GVDEDVFVGTSLIDLYGKRKEISC 189
             ++   +   ++ +GT++HA  IR            + + V +GT+L+D+Y K   +  
Sbjct: 232 VALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 291

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-----SNVSWNALIGGLV 244
           AR+VFD MP RN V+W+A+I G+     + +A  +F  M  +     S  S  + +    
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 351

Query: 245 KIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
            +  LR   QL   + +  V     +  +++  YAK G +  A +LF+    +D V++SA
Sbjct: 352 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 411

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           L+SGY QNG+ +EA  +F  M + NV+PD   +VSL+ ACS +  L         +    
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 471

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           +  S   +  AL+DM AKCG +D + ++F  MP+RD+VS+ +MI G  IHG G++A +LF
Sbjct: 472 LA-SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
             M + G  PD V F  +L+ACSH GLV +G  +F  M++ Y + P  EHY CMVDLL R
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSR 590

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L  AYE + SMP+      W ALLGAC++Y +I+LG+ V+  + EL P+  G++VLL
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 650

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           SNIY+ A R+ +   VR   K +G +K PGCS
Sbjct: 651 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCS 682


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/574 (33%), Positives = 309/574 (53%), Gaps = 83/574 (14%)

Query: 43  LIKKCKLQT---HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LI+ C ++       QVH+H++K G + D  +    I+ C S+ + ++ +  VFN     
Sbjct: 84  LIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN-CFSVCSNMTDACRVFNESSVL 142

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           ++  WN++L GY      IE+  +      EEA    +  P                   
Sbjct: 143 DSVSWNSILAGY------IEIGNV------EEAKHIYHQMP------------------- 171

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI---------- 209
                   +  +    S+I L+G R  +  A K+FDEM E+++V+W+A+I          
Sbjct: 172 --------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYE 223

Query: 210 ------VGYASVGDLVE-------------------AKTVFDLMPERSNVSW----NALI 240
                 VG   +G +V+                    K +  L  +    S+    NALI
Sbjct: 224 EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI 283

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
               K GD+  AR+LFDE    +++S+ +MI GY K   + +A+++F++ P++DVV+WS+
Sbjct: 284 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 343

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +ISGYAQN   DE + +F +M     +PDE  LVS++SAC+++  L+   WV +Y+ R+ 
Sbjct: 344 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 403

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           + ++   +   L+DM  KCG ++ A E+F  M  + + ++ ++I GL+++G    ++ +F
Sbjct: 404 LTINVI-LGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 462

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
             M    +TP+E+ F  VL AC H+GLV++G   F +M + + I P+ +HY CMVDLLGR
Sbjct: 463 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 522

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L+ A ELLN MP+ P  + WGALLGACK + D E+G  V  +L EL+P + G +VLL
Sbjct: 523 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLL 582

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           SNIYA+  +W DV  +R  M +  + KIPGCS +
Sbjct: 583 SNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMI 616



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 219/453 (48%), Gaps = 65/453 (14%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + Y+  +FN I N N F+WN +++ Y Q +     FT++  ++      D YT+PL+I+A
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS   S  E   +H  V++ G D DV+V  +LI+ +     ++ A +VF+E    + VSW
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
            +++ GY  +G++ EAK ++  MPERS ++ N++I      G +  A +LFDEM E    
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLE---- 203

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
                                      +D+V WSALI+ + QN   +EA++ F  M    
Sbjct: 204 ---------------------------KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIG 236

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM--- 382
           V  DE + VS +SAC+ +  +++   + S LS      S  ++  AL+ M +KCG++   
Sbjct: 237 VMVDEVVAVSALSACANLLVVNMGKLIHS-LSLKIGTESYINLQNALIYMYSKCGDIMVA 295

Query: 383 ----------------------------DRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
                                       D A  +F++MP +DVVS+ SMI G + +    
Sbjct: 296 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 355

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           + ++LF  M   G  PDE     V++AC+ +  +E G ++  A      +  +      +
Sbjct: 356 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTL 414

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +D+  + G +++A E+   M +E   S W AL+
Sbjct: 415 IDMYMKCGCVETALEVFYGM-IEKGISTWNALI 446


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/548 (32%), Positives = 307/548 (56%), Gaps = 17/548 (3%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           SC+++A T  +  +      +VH+ +I+ G ++D    A+ +   +S    +  +  VF 
Sbjct: 206 SCVVNACTGSRDLEAG---RKVHAMVIRTGYDKD-VFTANALVDMYSKLGDIRMAAVVFG 261

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           ++   +   WN  + G   +        + +++     VP+ +T   ++KAC+   +   
Sbjct: 262 KVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNL 321

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  IH  +++   D D ++   L+D+Y K   +  A+KVFD +P+R++V W A+I G + 
Sbjct: 322 GRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSH 381

Query: 215 VGDLVEAKTVFDLM-PERSNVSWNAL------IGGLVKIGDLRSARQLFDEM---PERNV 264
                EA ++F  M  E  +V+   L         L  I D R    L +++    + +V
Sbjct: 382 GAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHV 441

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           V+   +ID Y K   +  A  +FE     D++A++++I+  +Q    ++A+K+F +M  K
Sbjct: 442 VN--GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRK 499

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            + PD F+L SL++AC+ +   +    V ++L +    +S      ALV   AKCG+++ 
Sbjct: 500 GLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDVFAGNALVYTYAKCGSIED 558

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A   F  +P + VVS+ +MI GL+ HGHG++A+ +F RM+ E ++P+ +  T VL AC+H
Sbjct: 559 ADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNH 618

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GLV++  R+F +M+ ++ I  + EHYACM+DLLGR G L  A EL+NSMP + +A+ WG
Sbjct: 619 AGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWG 678

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALL A +++ D ELG L A +LF LEP+ +G++VLL+N YA+A  W DV  VR  MK+  
Sbjct: 679 ALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSK 738

Query: 565 LRKIPGCS 572
           ++K P  S
Sbjct: 739 VKKEPAMS 746



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/540 (27%), Positives = 242/540 (44%), Gaps = 53/540 (9%)

Query: 4   IDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLH--------- 54
            DE   PC H S SS++   S +A      P   L A   ++ C ++ +           
Sbjct: 60  FDEIPDPC-HVSWSSLVTAYSNNA-----MPRDALGAFRSMRSCSVRCNEFVLPVVLKCA 113

Query: 55  -------QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
                  Q+H+  +  GL  D    ++LVA +          + +  A   R    NT  
Sbjct: 114 PDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCER----NTVS 169

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN L+  Y +N R      +F  ++     P+++ F  V+ AC+    +  G  +HA VI
Sbjct: 170 WNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVI 229

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           R G D+DVF   +L+D+Y K  +I  A  VF ++PE +VVSW A I G    G    A  
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALE 289

Query: 224 VFDLMPERSNV----SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYA 275
           +   M     V    + ++++      G     RQ+   M + N  S       ++D YA
Sbjct: 290 LLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYA 349

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K G +  A+ +F+  P RD+V W+ALISG +   Q  EA+ +F  M  +    +   L +
Sbjct: 350 KHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAA 409

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++ + + +  +  +  V + L+     LS +HV+  L+D   KC  ++ A  +FE   + 
Sbjct: 410 VLKSTASLEAISDTRQVHA-LAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSY 468

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D++++ SMI  LS   HG  A+ LF  ML +GL PD    + +L AC+ +   E G +  
Sbjct: 469 DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVH 528

Query: 456 ------EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                 + M +V+A       YA       + G ++ A    + +P E    +W A++G 
Sbjct: 529 AHLIKRQFMSDVFAGNALVYTYA-------KCGSIEDADLAFSGLP-EKGVVSWSAMIGG 580



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 150/562 (26%), Positives = 256/562 (45%), Gaps = 66/562 (11%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            +H+H++K GL        H +S       P S +  VF+ I +P    W++L+  YS N
Sbjct: 25  HIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGS-ARRVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 115 SRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           +   +    F R +R  +V  +++  P+V+K          GT +HA  +  G+  D+FV
Sbjct: 82  AMPRDALGAF-RSMRSCSVRCNEFVLPVVLKCAP---DAGFGTQLHALAMATGLGGDIFV 137

Query: 174 GTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLM---- 228
             +L+ +YG    +  AR VFDE   ERN VSW  ++  Y        A  VF  M    
Sbjct: 138 ANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGG 197

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSAR 284
            + +   ++ ++       DL + R++   +     +++V +   ++D Y+K+GD+  A 
Sbjct: 198 VQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAA 257

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F   P+ DVV+W+A ISG   +G    A+++   M S  + P+ F L S++ AC+  G
Sbjct: 258 VVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSG 317

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
             +L   +  ++ +++ D S  ++   LVDM AK G +D A ++F+ +P RD+V + ++I
Sbjct: 318 AFNLGRQIHGFMVKANAD-SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALI 376

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC---------------------- 442
            G S      +A+SLF RM  EG   +      VL +                       
Sbjct: 377 SGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFL 436

Query: 443 --SHV--GLVEDGW---------RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
             SHV  GL++  W         R FE     Y I+     +  M+  L +  H + A +
Sbjct: 437 SDSHVVNGLIDSYWKCDCLNYAYRVFEK-HGSYDIIA----FTSMITALSQCDHGEDAIK 491

Query: 490 LLNSM---PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLLSNI 543
           L   M    ++P      +LL AC   S  E G+ V   L + +  +   AG+ ++ +  
Sbjct: 492 LFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYT-- 549

Query: 544 YATADRWLDVCLVRSKMKERGL 565
           YA      D  L  S + E+G+
Sbjct: 550 YAKCGSIEDADLAFSGLPEKGV 571



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 25/373 (6%)

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           S+ +G  IHA +++ G+   VF    L+  Y K +    AR+VFDE+P+   VSW++++ 
Sbjct: 19  SLLQGAHIHAHLLKSGLFA-VFR-NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVT 76

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALI-----------GGLVKIGDLRSARQLFDEM 259
            Y++     +A   F  M    +V  N  +           G   ++  L  A  L  ++
Sbjct: 77  AYSNNAMPRDALGAFRSM-RSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDI 135

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
              N      ++  Y   G +  AR +F EA  +R+ V+W+ L+S Y +N +   AVK+F
Sbjct: 136 FVAN-----ALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVF 190

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M    VQP+EF    +++AC+   +L+    V + + R+  D        ALVDM +K
Sbjct: 191 GEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYD-KDVFTANALVDMYSK 249

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
            G++  AA +F  +P  DVVS+ + I G  +HGH + A+ L  +M S GL P+    + +
Sbjct: 250 LGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSI 309

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVE 497
           L AC+  G    G +    M  V A   S  + A  +VD+  + G L  A ++ + +P +
Sbjct: 310 LKACAGSGAFNLGRQIHGFM--VKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP-Q 366

Query: 498 PHASAWGALLGAC 510
                W AL+  C
Sbjct: 367 RDLVLWNALISGC 379


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 281/533 (52%), Gaps = 52/533 (9%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAV--------PDKYTF 139
           S++ F++ +N N    +T L  +S++ RF E+  +F +  R +EAV        P    +
Sbjct: 9   SSSQFHKNLNLNP--KDTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLY 66

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             +I AC     +  G  +HA          + +   LI +Y K   +  A+ +FDE+P+
Sbjct: 67  STLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQ 126

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           +++ SW  MI GYA+VG + +A+ +FD MP R N SWNA+I G V  G    A  LF  M
Sbjct: 127 KDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMM 186

Query: 260 PER----------------------------------------NVVSYTTMIDGYAKVGD 279
            E                                         + V +T ++D Y K G 
Sbjct: 187 QENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGS 246

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR +F+   D+D+V+W+ +I    ++G+  E   +F D+    V+P+E+    +++A
Sbjct: 247 LNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNA 306

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +    +   V  Y++R   D   +   +ALV + +KCGN + A  +F  MP  D+VS
Sbjct: 307 CADLAAEQMGKEVHGYMTRVGYD-PFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVS 365

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + S+I G + +G    A+  F+ +L  G  PDE+ F  VL+AC+H GLV+ G  +F +++
Sbjct: 366 WTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVK 425

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             + +V + +HYAC++DLL R+G  K A  ++++MP++P    W +LLG C+++ +IEL 
Sbjct: 426 EKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELA 485

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E  A  LFELEP+N  +Y+ LSNIYA A  W +   VR+ M  RG+ K PG S
Sbjct: 486 ERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKS 538



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 159/348 (45%), Gaps = 36/348 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H ++I+ GLE D  +    + L +     L+ +  +F+++ + +   W T++    ++
Sbjct: 217 EIHGYLIRSGLELDEVVWTALLDL-YGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFED 275

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R  E F++F  L+     P++YTF  V+ AC+ + + + G  +H  + R G D   F  
Sbjct: 276 GRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAA 335

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PE 230
           ++L+ +Y K      AR+VF++MP  ++VSWT++IVGYA  G    A   F+ +     +
Sbjct: 336 SALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK 395

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
              +++  ++      G +    + F  + E++ + +T   D YA V D+          
Sbjct: 396 PDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTA--DHYACVIDL---------- 443

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
                          A++G+  EA  I  +M  K   PD+F+  SL+  C   GN++L+ 
Sbjct: 444 --------------LARSGRFKEAENIIDNMPMK---PDKFLWASLLGGCRIHGNIELAE 486

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
                L    ++         L ++ A  G      ++   M NR +V
Sbjct: 487 RAAKALFE--LEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIV 532


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 278/485 (57%), Gaps = 37/485 (7%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHV 149
           ++F+R+   N   W  ++ GY +   F + F +F+R+ +E  V  +  T  ++ KAC   
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           +  REG+ IH  V R  ++ D+F+G SL+ +Y K                          
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSK-------------------------- 322

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
                +G + EAK VF +M  + +VSWN+LI GLV+   +  A +LF++MP +++VS+T 
Sbjct: 323 -----LGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTD 377

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           MI G++  G+++    LF   P++D + W+A+IS +  NG  +EA+  F  M  K V P+
Sbjct: 378 MIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPN 437

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAE 387
            +   S++SA + + +L     +   + + ++  DLS   V  +LV M  KCGN + A +
Sbjct: 438 SYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS---VQNSLVSMYCKCGNTNDAYK 494

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  +   ++VSY +MI G S +G G++A+ LF  + S G  P+ V F  +L+AC HVG 
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V+ GW++F++M++ Y I P P+HYACMVDLLGR+G L  A  L+++MP +PH+  WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
            A K +  ++L EL A +L ELEP +A  YV+LS +Y+   +  D   + +  K + ++K
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674

Query: 568 IPGCS 572
            PG S
Sbjct: 675 DPGSS 679



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 211/462 (45%), Gaps = 58/462 (12%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           H+    L  + A+F ++ N +   W  ++  Y++N +  + + +F      + +P     
Sbjct: 60  HARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVF------DEMP----- 108

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
                       VR  T+ +A +            T++I     + ++  A ++F ++PE
Sbjct: 109 ------------VRVTTSYNAMI------------TAMIK---NKCDLGKAYELFCDIPE 141

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFD 257
           +N VS+  MI G+   G   EA+ ++   P   R +V+ N L+ G ++ G    A ++F 
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQ 201

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
            M  + VVS ++M+ GY K+G +  ARSLF+   +R+V+ W+A+I GY + G  ++   +
Sbjct: 202 GMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL 261

Query: 318 FSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           F  M  + +V+ +   L  +  AC         + +   +SR  ++     +  +L+ M 
Sbjct: 262 FLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFD-LFLGNSLMSMY 320

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           +K G M  A  +F  M N+D VS+ S+I GL       +A  LF++M  +    D V++T
Sbjct: 321 SKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK----DMVSWT 376

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YACMVDLLGRTGHLKSAYELLNSM 494
            ++   S  G +      F        ++P  ++  +  M+      G+ + A    + M
Sbjct: 377 DMIKGFSGKGEISKCVELF-------GMMPEKDNITWTAMISAFVSNGYYEEALCWFHKM 429

Query: 495 ---PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
               V P++  + ++L A    +D+  G  +  R+ ++   N
Sbjct: 430 LQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           +S    +F  +   +   W  ++  +  N  + E    F +++++E  P+ YTF  V+ A
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + +  + EG  IH  V++  +  D+ V  SL+ +Y K    + A K+F  + E N+VS+
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             MI GY+  G   +A  +F ++     E + V++ AL+   V +G +    + F  M  
Sbjct: 508 NTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKS 567

Query: 262 RNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
              +      Y  M+D   + G +  A +L    P +     W +L+S
Sbjct: 568 SYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLS 615


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/542 (32%), Positives = 298/542 (54%), Gaps = 28/542 (5%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S +T+  K K       +   I ++ +  D ++++ ++      A  L  +  VF+++V 
Sbjct: 87  SMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVR-----AGRLDKARQVFDQMVE 141

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N F W +L+ GY +     E   +F ++      P+K     V+   + V+   +   I
Sbjct: 142 RNVFSWTSLVSGYFKIGNVDEAMRLFNQM------PEKN----VVSWTTAVVGYAQNGFI 191

Query: 159 HAA--VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
             A  +     ++++   T+++  Y +  EI  A ++F +MP+RN+ SW  MI G  +  
Sbjct: 192 DEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINAN 251

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
            L EA  +F+ MP+R+ VSW  L+ GL + G +  AR+ FD MP +++ ++  MI  Y  
Sbjct: 252 RLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVD 311

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            G M  A +LF   P++++V+W+ALI GYA+NG    +++    M   N +P+E  + S+
Sbjct: 312 QGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSV 371

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNR 395
           ++AC  +  L     + ++    H+   +  V+A  LV   ++CG++  A  +F+ +  +
Sbjct: 372 LTACDSILEL-----MQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIK 426

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           D+VS+ +MI   S HG G  A+ +F RML  G  PD + F  +L+ACSH GLV+ G   F
Sbjct: 427 DIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLF 486

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH---ASAWGALLGACKL 512
           ++M   Y + P  EHY+C+VD+LGR G +  A ++++ MP  PH    +  GALLGAC+L
Sbjct: 487 DSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMP--PHECDGAVLGALLGACRL 544

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + D+ L   +  +L E EP ++GSYVLL+N YA   +W +   VR +MKER ++K PG S
Sbjct: 545 HKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPGFS 604

Query: 573 SL 574
            +
Sbjct: 605 QI 606



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 170/340 (50%), Gaps = 54/340 (15%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D +     I   G R ++  ARKVFDEMP R+ VS+ +MI  Y    DL +A+ +F  +P
Sbjct: 50  DTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIP 109

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           ER+ V+ +A+I G V+ G L  ARQ+FD+M ERNV S+T+++ GY K+G++  A  LF  
Sbjct: 110 ERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQ 169

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            P+++VV+W+  + GYAQNG  DEA  IF+ M  KN+                   +  +
Sbjct: 170 MPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNI-------------------IAWT 210

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
             V SY+                         +D A ELF  MP R++ S+  MI G   
Sbjct: 211 AMVKSYVENDE---------------------IDEAFELFYQMPQRNLYSWNIMISGCIN 249

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
                +A+ LF+ M       +EV++T ++T  +  G++E   ++F+ M       P+ +
Sbjct: 250 ANRLNEAIQLFNSMPQR----NEVSWTTLVTGLARNGMMELARKYFDHM-------PTKD 298

Query: 470 --HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
              +  M+      G +  A  L N MP E +  +W AL+
Sbjct: 299 IAAWNAMITAYVDQGSMAEASNLFNLMP-EKNIVSWNALI 337


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 188/553 (33%), Positives = 290/553 (52%), Gaps = 13/553 (2%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV-AHFISLCHSLATPLSYS 89
           F  P+ L S +      +        H+ IIK       S +  H +++   L  P S +
Sbjct: 3   FLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNS-A 61

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             + +   N +   W  L+ G  QN RF      F  + R+   P+ +TFP   KA   +
Sbjct: 62  QLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSL 121

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            S   G  +HA  ++ G   DVFVG S  D+Y K      ARK+FDEMPERN+ +W A +
Sbjct: 122 RSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYL 181

Query: 210 VGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQL----FDEMPE 261
                 G   +A T F        E + +++ A +        LR  RQL         E
Sbjct: 182 SNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFE 241

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            +V     +ID Y K   +  +  +F      + V+W ++I  Y QN + ++A  +F   
Sbjct: 242 ADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRA 301

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             + ++P +F++ S++SAC+ +  L++   V +   ++ + +    V +ALVDM  KCG+
Sbjct: 302 RKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACV-VGNIFVGSALVDMYGKCGS 360

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML--SEGLTPDEVAFTIVL 439
           ++ A   F+ MP R++V++ +MI G +  G    AV+LFD M   S  + P+ V F  VL
Sbjct: 361 IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +ACS  G V  G   FE+M+  Y I P  EHYAC+VDLLGR G ++ AY+ +  MP+ P 
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
            S WGALLGA K++   ELG++ A+ LFEL+P ++G++VLLSN++A A RW +  LVR +
Sbjct: 481 VSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKE 540

Query: 560 MKERGLRKIPGCS 572
           MK+ G++K  GCS
Sbjct: 541 MKDVGIKKGAGCS 553


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 294/561 (52%), Gaps = 16/561 (2%)

Query: 22  NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           N + S+ I+  K +   S L   +K     H  Q H+H++K GLE D ++    +SL   
Sbjct: 49  NSTHSSEIS-AKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFK 107

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL 141
           L   +  +  VF+ +   +   W +++ GY  +   ++   +FV ++     P+K+T   
Sbjct: 108 LGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSS 167

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
            +KAC  +  VR G   H  VI  G + +  + ++L  +YG  KE   AR+VFDEMPE +
Sbjct: 168 AVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPD 227

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGG--LVKIGDLRSARQ----- 254
           V+ WTA++  ++      EA  +F  M     +  +    G  L   G+LR  +Q     
Sbjct: 228 VICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIH 287

Query: 255 --LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
             L       NVV  ++++D Y K G +  AR +F   P +++V+WSAL+ GY QNG+ +
Sbjct: 288 GKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHE 347

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           +A+++F +M  K    D +   +++ AC+ +  + L   +     R         V +AL
Sbjct: 348 KAIEMFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGC-FGNVIVESAL 402

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           +D+  K G +D A+ ++  M  R+++++ +M+  L+ +G G +AVS F+ M+ +G+ PD 
Sbjct: 403 IDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDY 462

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
           ++F  VLTAC H GLVE+G  +F  M   Y I P  EHY+CM+DLLGR G  + A  LL+
Sbjct: 463 ISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLD 522

Query: 493 SMPVEPHASAWGALLGACKLYSDI-ELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
                  AS WG LLG C   +D   + E +A R+ ELEP+   SYVLLSN+Y    R  
Sbjct: 523 RAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHG 582

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D   +R  M  RG+ K  G S
Sbjct: 583 DALKIRKLMVRRGVAKTVGQS 603


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 302/573 (52%), Gaps = 42/573 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L L    K  T   +VHS I    +  D  L    +SL ++    L     VF+ +  
Sbjct: 104 SVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSL-YATCGDLKEGRRVFDTMEK 162

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY---TFPLVIKACSH-VLS--- 151
            N +LWN ++  Y++   F E   +F +++ E+ +  K       L  K C   V+S   
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLF-KIMVEKGIEGKRPESASELFDKLCDRDVISWNS 221

Query: 152 ----------VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV----FDEM 197
                        G  I+  ++  G+D D+    S++        +S  + V        
Sbjct: 222 MISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKST 281

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            ER +     ++  Y+  GDL  A  VF+ M ER+ VSW ++I G  + G    A +L  
Sbjct: 282 FERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQ 341

Query: 258 EMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAP----DRDVVAWSALISGYAQNG 309
           +M +     +VV+ T+++   A+ G + + + + +       + ++   +AL+  Y + G
Sbjct: 342 QMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCG 401

Query: 310 QPDEAVKIFSDMCSKNV----------QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
             D A  +FS M  K++          +PD   +  ++ AC+ +  L+    +  Y+ R+
Sbjct: 402 SMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRN 461

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
                R HV  ALVD+  KCG +  A  LF+ +P++D+VS+  MI G  +HG+G +A++ 
Sbjct: 462 GYSSDR-HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIAT 520

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F+ M   G+ PDEV+F  +L ACSH GL+E GWRFF  M+N + I P  EHYACMVDLL 
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           RTG+L  AYE + ++P+ P A+ WGALL  C++Y DIEL E VA R+FELEP+N G YVL
Sbjct: 581 RTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVL 640

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+NIYA A++W +V  +R K+ ++GLRK PGCS
Sbjct: 641 LANIYAEAEKWEEVKRMREKIGKKGLRKNPGCS 673


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/527 (32%), Positives = 292/527 (55%), Gaps = 12/527 (2%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  + KK ++ D  + +  I L +S    ++ +  VF      +  LW +++ GY QN 
Sbjct: 127 IHGFLKKKKIDNDMFVGSALIEL-YSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNG 185

Query: 116 RFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                   F R++  E+  PD  T      AC+ +     G ++H  V R G D  + + 
Sbjct: 186 SPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLA 245

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
            S+++LYGK   I  A  +F EMP ++++SW++M+  YA  G    A  +F+ M ++   
Sbjct: 246 NSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIE 305

Query: 232 -SNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            + V+  + +       +L   + +     +   E ++   T ++D Y K     +A  L
Sbjct: 306 LNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDL 365

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F   P +DVV+W+ L SGYA+ G   +++ +F +M S   +PD   LV +++A S++G +
Sbjct: 366 FNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIV 425

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             +  + +++S+S  D +   + A+L+++ AKC ++D A ++F+ M  +DVV++ S+I  
Sbjct: 426 QQALCLHAFVSKSGFD-NNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAA 484

Query: 407 LSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
              HG G +A+ LF +M +   + P++V F  +L+ACSH GL+E+G + F  M N Y ++
Sbjct: 485 YGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLM 544

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P+ EHY  MVDLLGR G L  A +++N MP++     WGALLGAC+++ +I++GEL A  
Sbjct: 545 PNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALN 604

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LF L+P +AG Y LLSNIY     W D   +R+ +KE   +KI G S
Sbjct: 605 LFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQS 651



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 217/424 (51%), Gaps = 16/424 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           + L++ C  +  + Q+HS  +K GL  D S V   +++ ++    L ++  +F       
Sbjct: 8   VKLLETCCSKISIPQLHSQCLKVGLAHD-SFVVTKLNVLYARYASLCHAHKLFEETPCKT 66

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRL----IREEAVPDKYTFPLVIKACSHVLSVREGT 156
            +LWN LL+ Y    +++E  ++F ++    I EE  PD YT  + +K+CS +  +  G 
Sbjct: 67  VYLWNALLRSYFLEGKWVETLSLFHQMNADAITEER-PDNYTVSIALKSCSGLQKLELGK 125

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            IH  + +  +D D+FVG++LI+LY K  +++ A KVF E P+++VV WT++I GY   G
Sbjct: 126 MIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNG 185

Query: 217 DLVEAKTVFDLMPERSNVSWNALI-----GGLVKIGDLRSARQLFDEMPERNVVSY---- 267
               A   F  M     VS + +          ++ D    R +   +  R   +     
Sbjct: 186 SPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLA 245

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            ++++ Y K G + SA +LF   P +D+++WS++++ YA NG    A+ +F++M  K ++
Sbjct: 246 NSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIE 305

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
            +   ++S + AC+   NL+    +         +L    V  AL+DM  KC +   A +
Sbjct: 306 LNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDIT-VSTALMDMYMKCFSPKNAID 364

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           LF  MP +DVVS+  +  G +  G   +++ +F  MLS G  PD +A   +L A S +G+
Sbjct: 365 LFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGI 424

Query: 448 VEDG 451
           V+  
Sbjct: 425 VQQA 428


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 278/493 (56%), Gaps = 16/493 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +FN +   N   WN ++ GY  N    +    F  + + ++   +     +I+    V +
Sbjct: 174 LFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEA 233

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--------ERNVV 203
            R        V   G  + V    +LI  YG++     ARK+FD +P         RNV+
Sbjct: 234 ERILLQYGGNV---GKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVI 290

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           SW +MI+ Y   GD+V A+ +FD M ER   SWN +I G V+I D++ A  LF  MPE +
Sbjct: 291 SWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPD 350

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
            +S+  MI G++++G +  A  LF+  P++ +V+W+++ISGY +N     A+ IF  M  
Sbjct: 351 TLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQL 410

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNM 382
           +  +PD   L S++SAC+ + +L L   +   ++++ + DL    +  +LV M ++CG +
Sbjct: 411 EGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLP---INNSLVTMYSRCGAI 467

Query: 383 DRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
             A  +F+ M   RDV+S+ +MI G + HG   +A+ LFD M    + P  + F  VL A
Sbjct: 468 VEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNA 527

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+H GL+E+G R F +M N + I P  EHYA +VD++GR G L+ A  L+NSMP EP  +
Sbjct: 528 CAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKA 587

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALLGACK+++++E+    A  L +L+P+++  YVLL N+YA   RW D   +R+ M+
Sbjct: 588 VWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMME 647

Query: 562 ERGLRKIPGCSSL 574
           +  ++K  G S +
Sbjct: 648 KNNVQKDAGYSRV 660



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 189/405 (46%), Gaps = 40/405 (9%)

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           VP+ Y+    I        + E   +  +   W    +      +I  Y KR+E+  AR+
Sbjct: 54  VPEFYSLNKKISYLIRTGRINEARELFDSTEHW----NTITWNRMITAYVKRREMLKARQ 109

Query: 193 VFDEMPERNVVSWTAMIVGYASVG-DLVE-AKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
           +F+EMP R++VSW  M+ GY S G   VE A+ +FD MPE   VSWN ++ G  K G + 
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMD 169

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
            A +LF+EMPERNVVS+  M+ GY   G +  A   F+  P RD  +  ALISG  QN +
Sbjct: 170 KAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDK 229

Query: 311 PDEAVKIFSDMCSKNVQPDEFI--LVSLMSACSQVGNLDLSNWVDSYLSRSHMD------ 362
             EA +I       NV   + +    +L++   Q G         +Y +R   D      
Sbjct: 230 LVEAERILLQY-GGNVGKGDLVDAYNTLIAGYGQKGM--------AYEARKLFDRIPLCC 280

Query: 363 ---LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
               SR +VI+  +++    + G++  A ELF+ M  RD  S+ +MI G       ++A 
Sbjct: 281 DCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEAS 340

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           +LF RM      PD +++ ++++  S +G ++     F+ +        S   +  M+  
Sbjct: 341 NLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDLFKRIPE-----KSLVSWNSMISG 391

Query: 478 LGRTGHLKSAYELLNSMPVE---PHASAWGALLGACKLYSDIELG 519
             +    K A  +   M +E   P      ++L AC    D+ LG
Sbjct: 392 YEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLG 436



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 200/462 (43%), Gaps = 92/462 (19%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+   + NT  WN ++  Y +    ++   +F      E +P++      +    ++  
Sbjct: 79  LFDSTEHWNTITWNRMITAYVKRREMLKARQLF------EEMPNRDIVSWNLMLSGYISC 132

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
             +       +     + D     +++  Y K   +  A ++F+EMPERNVVSW AM+ G
Sbjct: 133 GGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSG 192

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-------------------IGDL--- 249
           Y   G + +A   F LMP+R + S  ALI GL++                    GDL   
Sbjct: 193 YLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDA 252

Query: 250 --------------RSARQLFDEMP--------ERNVVSYTTMIDGYAKVGDMTSARSLF 287
                           AR+LFD +P         RNV+S+ +MI  Y + GD+ SAR LF
Sbjct: 253 YNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELF 312

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   +RD  +W+ +ISGY Q     EA  +FS M     +PD      ++S  S++G+L 
Sbjct: 313 DKMVERDTFSWNTMISGYVQILDMKEASNLFSRM----PEPDTLSWNMMISGFSEIGSLK 368

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L                                    A +LF+ +P + +VS+ SMI G 
Sbjct: 369 L------------------------------------AHDLFKRIPEKSLVSWNSMISGY 392

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
             +   + A+++F +M  EG  PD    + +L+AC+ +  +  G +  + +   + I   
Sbjct: 393 EKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAF-IADL 451

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           P + + +V +  R G +  A  + + M ++    +W A++G 
Sbjct: 452 PINNS-LVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGG 492



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 166/369 (44%), Gaps = 63/369 (17%)

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           +C+  A  +  +  +F+++V  +TF WNT++ GY Q     E   +F R+      PD  
Sbjct: 297 MCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPE----PDTL 352

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           ++ ++I   S + S++    +   +     ++ +    S+I  Y K ++   A  +F +M
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRI----PEKSLVSWNSMISGYEKNEDYKGAMNIFLQM 408

Query: 198 ------PERNVVSW--------------------------------TAMIVGYASVGDLV 219
                 P+R+ +S                                  +++  Y+  G +V
Sbjct: 409 QLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIV 468

Query: 220 EAKTVFDLMP-ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGY 274
           EA+ VFD M  +R  +SWNA+IGG    G    A QLFD M + NV    +++ ++++  
Sbjct: 469 EARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNAC 528

Query: 275 AKVGDMTSARSLFEAAPDR-----DVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQP 328
           A  G +   R  F +  +       V  ++AL+    ++GQ +EA+ + + M C    +P
Sbjct: 529 AHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPC----EP 584

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D+ +  +L+ AC    N++++      L +   + S  +V+  L +M A  G  D AAE+
Sbjct: 585 DKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVL--LHNMYADVGRWDDAAEM 642

Query: 389 FETMPNRDV 397
              M   +V
Sbjct: 643 RTMMEKNNV 651


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/526 (32%), Positives = 272/526 (51%), Gaps = 54/526 (10%)

Query: 100 NTFLW----NTLLKGYSQNSRFIEVFTIFVRLIR-EEAV--------PDKYTFPLVIKAC 146
           NTF      + L+K   +++ F E   I     R  EA+        P   T+  +++ C
Sbjct: 40  NTFFKSGAKDELVKRLCKDNNFKEAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLC 99

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
             + ++ EG  +HA     G    V +   ++D+Y K   +  A+++FDEM ER++ SW 
Sbjct: 100 LQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWN 159

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER---- 262
            MI GYA  G L EA+ +FD M ER N SW A+  G V+      A +LF  M       
Sbjct: 160 IMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFK 219

Query: 263 ------------------------------------NVVSYTTMIDGYAKVGDMTSARSL 286
                                               + V ++ + D Y K G +  AR +
Sbjct: 220 CNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHI 279

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+   DRDVV+W+A+I  Y + G+ +E   +FSD+    + P+EF    +++AC+     
Sbjct: 280 FDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAE 339

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +L   V  Y++R   D S +   + LV M  KCGN+  A  +F  MP  D+VS+ S+I G
Sbjct: 340 ELGKQVHGYMTRIGFDPS-SFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISG 398

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + +G   +A+  F+ +L  G  PD + F  VL+AC+H GLV+ G  +F++++  + +  
Sbjct: 399 YAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTH 458

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + +HYAC++DLL R+G L+ A ++++ MP+EP    W +LLG C+++ +++L +  A  L
Sbjct: 459 TADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEAL 518

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           FE+EP+N  +Y  L+NIYATA  W  V  VR  M  RG+ K PG S
Sbjct: 519 FEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLS 564



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 184/357 (51%), Gaps = 16/357 (4%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYT 138
           ++ A  L  +  +F+++   + F W  +  GY ++ +  E   +F  + R E    +K+T
Sbjct: 165 YAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFT 224

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
               + A + + S+  G  IH  ++R G+D D  V ++L D+YGK   I  AR +FD+  
Sbjct: 225 MSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTV 284

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPER---SNVSWNALIGGLVKIGDLRSARQ 254
           +R+VVSWTAMI  Y   G   E   +F DL+      +  +++ ++            +Q
Sbjct: 285 DRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQ 344

Query: 255 LFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +   M     + +  + +T++  Y K G++ +AR +F   P  D+V+W++LISGYAQNGQ
Sbjct: 345 VHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQ 404

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLSRAHVI 369
           PDEA++ F  +     QPD    V ++SAC+  G +D    + DS   +  +  +  H  
Sbjct: 405 PDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHY- 463

Query: 370 AALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGH----GRQAVSLFD 421
           A L+D+ ++ G +  A ++ + MP   D   + S++ G  IHG+     R A +LF+
Sbjct: 464 ACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFE 520



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 174/397 (43%), Gaps = 52/397 (13%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H HI++ GL+ D  +V   +S  +     +  +  +F++ V+ +   W  ++  Y + 
Sbjct: 243 EIHGHILRIGLDLD-GVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKE 301

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R  E F +F  L++    P+++TF  V+ AC+   +   G  +H  + R G D   F  
Sbjct: 302 GRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAA 361

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PE 230
           ++L+ +Y K   I  AR+VF+ MP  ++VSWT++I GYA  G   EA   F+L+     +
Sbjct: 362 STLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQ 421

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
             ++++  ++      G +    + FD + E++ +++T   D YA + D+ S        
Sbjct: 422 PDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTA--DHYACLIDLLS-------- 471

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
                           ++G+  EA  I   M    ++PD+F+  SL+  C   GNL L+ 
Sbjct: 472 ----------------RSGRLQEAEDIIDKM---PIEPDKFLWASLLGGCRIHGNLKLAK 512

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM------- 403
                L    ++         L ++ A  G     AE+ + M  R VV    +       
Sbjct: 513 RAAEALFE--IEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKR 570

Query: 404 -----IKGLSIHGHGRQA----VSLFDRMLSEGLTPD 431
                + G + H   ++       L  RM  EG  PD
Sbjct: 571 EVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYVPD 607


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 276/488 (56%), Gaps = 8/488 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  ++  +   WNTLL G  QN  + +    F  +      PD+ +   +I A     +
Sbjct: 305 VFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGN 364

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +G  +HA  IR G+D ++ +G +L+D+Y K   +      F+ M E++++SWT +I G
Sbjct: 365 LLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAG 424

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------NV 264
           YA     +EA  +F  +  +       +IG +++      +R    E+          ++
Sbjct: 425 YAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADI 484

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +    +++ Y +VG +  AR  FE+   +D+V+W+++I+    NG P EA+++F  +   
Sbjct: 485 MLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           N+QPD   ++S +SA + + +L     +  +L R    L    + ++LVDM A CG ++ 
Sbjct: 545 NIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFL-EGPIASSLVDMYACCGTVEN 603

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           + ++F ++  RD++ + SMI    +HG G +A++LF +M  + + PD + F  +L ACSH
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSH 663

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GL+ +G RFFE M+  Y + P PEHYACMVDLL R+  L+ AY  + +MP++P +  W 
Sbjct: 664 SGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWC 723

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGAC ++S+ ELGEL A  L + + +N+G Y L+SNI+A   RW DV  VR +MK  G
Sbjct: 724 ALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 565 LRKIPGCS 572
           L+K PGCS
Sbjct: 784 LKKNPGCS 791



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 226/472 (47%), Gaps = 27/472 (5%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
            Q+H+ ++K  L    + +A  + L +     L  +  VF+ +     F WN L+  +  
Sbjct: 66  QQLHALLLKSHLS---AFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVS 122

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           + +++E   ++  +       D  TFP V+KAC  +   R G  IH   ++ G  E VFV
Sbjct: 123 SGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFV 182

Query: 174 GTSLIDLYGKRKEISCARKVFDE--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE- 230
             +LI +YGK  ++  AR +FD   M + + VSW ++I  + + G+ +EA ++F  M E 
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEV 242

Query: 231 ---RSNVSWNALIGGLVKIGDLRSARQLFDEMPERN----VVSYTTMIDGYAKVGDMTSA 283
               +  ++ A + G+     ++    +   + + N    V     +I  YAK G M  A
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDA 302

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +FE+   RD V+W+ L+SG  QN    +A+  F DM +   +PD+  +++L++A  + 
Sbjct: 303 GRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRS 362

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           GNL     V +Y  R+ +D S   +   LVDM AKC  +      FE M  +D++S+ ++
Sbjct: 363 GNLLKGKEVHAYAIRNGLD-SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTI 421

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + +    +A++LF ++  +G+  D +    VL ACS       G +    ++ ++ 
Sbjct: 422 IAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIREIHG 474

Query: 464 IVPSPEHYACM-----VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
            V   +    M     V++ G  GH+  A     S+  +   S W +++  C
Sbjct: 475 YVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS-WTSMITCC 525



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 188/395 (47%), Gaps = 18/395 (4%)

Query: 73  AHFISLCHSLAT------PLSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIF 124
             F+ +C++L         L  +  +F+ I+    +T  WN+++  +      +E  ++F
Sbjct: 177 GEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLF 236

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184
            R+       + YTF   ++       V+ G  IH AV++     DV+V  +LI +Y K 
Sbjct: 237 RRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKC 296

Query: 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALI 240
             +  A +VF+ M  R+ VSW  ++ G        +A   F  M         VS   LI
Sbjct: 297 GRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLI 356

Query: 241 GGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
               + G+L   +++         + N+    T++D YAK   +      FE   ++D++
Sbjct: 357 AASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLI 416

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+ +I+GYAQN    EA+ +F  +  K +  D  ++ S++ ACS + + +    +  Y+
Sbjct: 417 SWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYV 476

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            +   DL+   +  A+V++  + G++D A   FE++ ++D+VS+ SMI     +G   +A
Sbjct: 477 FKR--DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEA 534

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + LF  +    + PD +A    L+A +++  ++ G
Sbjct: 535 LELFYSLKQTNIQPDSIAIISALSATANLSSLKKG 569


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/527 (32%), Positives = 295/527 (55%), Gaps = 41/527 (7%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           + ++  +F+ +   +   WN ++   SQ+ R  E   + V +  +    D  T+   + A
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 279

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+ + S+R G  +HA VIR     D +V ++L++LY K      A+ VF+ + +RN V+W
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAW 339

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPE----------------------------------- 230
           T +I G+   G   E+  +F+ M                                     
Sbjct: 340 TVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 399

Query: 231 ----RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
               ++ V  N+LI    K  +L+SA  +F  M E+++VS+T+MI  +++VG++  AR  
Sbjct: 400 SGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREF 459

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGN 345
           F+    ++V+ W+A++  Y Q+G  ++ +++++ M S K+V+PD    V+L   C+ +G 
Sbjct: 460 FDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGA 519

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
             L + +     +  + L  + V  A++ M +KCG +  A ++F+ +  +D+VS+ +MI 
Sbjct: 520 NKLGDQIIGRTVKVGLILDTS-VANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMIT 578

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G S HG G+QA+ +FD +L  G  PD +++  VL+ CSH GLV++G  +F+ M+ V+ I 
Sbjct: 579 GYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNIS 638

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH++CMVDLLGR GHL  A +L++ MP++P A  WGALL ACK++ + EL EL A  
Sbjct: 639 PGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKH 698

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +FEL+  ++GSY+L++ IYA A +  D   +R  M+++G++K PG S
Sbjct: 699 VFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 745



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 211/447 (47%), Gaps = 43/447 (9%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ +I+     D  + +  + L ++       +  VFN + + N   W  L+ G+ Q+
Sbjct: 291 QLHAQVIRNLPCIDPYVASALVEL-YAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQH 349

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F E   +F ++  E    D++    +I  C   + +  G  +H+  ++ G  + V V 
Sbjct: 350 GCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS 409

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SLI +Y K   +  A  +F  M E+++VSWT+MI  ++ VG++ +A+  FD M  ++ +
Sbjct: 410 NSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVI 469

Query: 235 SWNALIGGLVKIGDLRSARQLFDEM-PERNV----VSYTTMIDG---------------- 273
           +WNA++G  ++ G      ++++ M  E++V    V+Y T+  G                
Sbjct: 470 TWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGR 529

Query: 274 -------------------YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
                              Y+K G +  AR +F+    +D+V+W+A+I+GY+Q+G   +A
Sbjct: 530 TVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQA 589

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           ++IF D+  +  +PD    V+++S CS  G +         + R H         + +VD
Sbjct: 590 IEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVD 649

Query: 375 MNAKCGNMDRAAELFETMPNRDVVS-YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           +  + G++  A +L + MP +     + +++    IHG+   A  L  + + E  +PD  
Sbjct: 650 LLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELA-ELAAKHVFELDSPDSG 708

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQN 460
           ++ ++    +  G  +D  +  + M++
Sbjct: 709 SYMLMAKIYADAGKSDDSAQIRKLMRD 735



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 198/421 (47%), Gaps = 45/421 (10%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIK 144
           LS +  +F R+   +   WNTL+ GY Q+ +++     FV + R  ++ P+ +TF   +K
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           +C  +        +   V ++G  +D  V  +L+D++ +   +  A ++F  + E  +  
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
             +M+VGY     +  A  +FD MPER  VSWN ++  L + G +R A  +  +M  + V
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 265 ----VSYTT-----------------------------------MIDGYAKVGDMTSARS 285
                +YT+                                   +++ YAK G    A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F +  DR+ VAW+ LI+G+ Q+G   E+V++F+ M ++ +  D+F L +L+S C    +
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L L   + S   +S   +    V  +L+ M AKC N+  A  +F  M  +D+VS+ SMI 
Sbjct: 387 LCLGRQLHSLCLKSG-QIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMIT 445

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
             S  G+  +A   FD M     T + + +  +L A    G  EDG R +  M +   + 
Sbjct: 446 AHSQVGNIAKAREFFDGM----STKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVR 501

Query: 466 P 466
           P
Sbjct: 502 P 502



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 152/314 (48%), Gaps = 43/314 (13%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY----------------- 212
           +V     +++ Y K   +S A ++F  MP R+V SW  ++ GY                 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 213 ----------------ASVGDLVEAKTVFDLM--------PERSNVSWNALIGGLVKIGD 248
                            S G L E      L+         + S+V+  AL+   V+ G 
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVA-AALVDMFVRCGT 188

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           +  A +LF  + E  +    +M+ GY K   +  A  LF++ P+RDVV+W+ ++S  +Q+
Sbjct: 189 VDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G+  EA+ +  DM SK V+ D     S ++AC+++ +L     + + + R ++     +V
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR-NLPCIDPYV 307

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
            +ALV++ AKCG    A  +F ++ +R+ V++  +I G   HG   ++V LF++M +E +
Sbjct: 308 ASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 429 TPDEVAFTIVLTAC 442
           T D+ A   +++ C
Sbjct: 368 TLDQFALATLISGC 381



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 46/311 (14%)

Query: 237 NALIGGLVKIGDLRSARQLF-DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N L+   +  G L  AR+L   ++   NV+++  M++GY K+G ++ A  LF   P RDV
Sbjct: 43  NTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDV 102

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGN----LDLSN 350
            +W+ L+SGY Q+ Q   +++ F  M  S +  P+ F     M +C  +G     L L  
Sbjct: 103 ASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG 162

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA------------------------ 386
            V  + S+   D     V AALVDM  +CG +D A+                        
Sbjct: 163 MVQKFGSQDDSD-----VAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKT 217

Query: 387 -------ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
                  ELF++MP RDVVS+  M+  LS  G  R+A+ +   M S+G+  D   +T  L
Sbjct: 218 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 440 TACSHVGLVEDGWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           TAC+ +  +  G +   + ++N+  I   P   + +V+L  + G  K A  + NS+  + 
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPCI--DPYVASALVELYAKCGCFKEAKGVFNSLH-DR 334

Query: 499 HASAWGALLGA 509
           +  AW  L+  
Sbjct: 335 NNVAWTVLIAG 345


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 262/448 (58%), Gaps = 7/448 (1%)

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           R     D  T+  +IK CS   +V+EG  +H  +   G +  +FV  +L+++Y K   + 
Sbjct: 48  RHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLE 107

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNV-SWNALIGGLVK 245
            A  +FDEMPERNVVSWT MI  Y++  +    K +  +  E  R N+ ++++++     
Sbjct: 108 EAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDG 167

Query: 246 IGDLRSAR-QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           + +LR     +     E +V   + +ID Y+K  D+ +A  +F+  P RD+V W+++I G
Sbjct: 168 LPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGG 227

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           +AQN   +EA+ +F  M       D+  L S++ AC+ +  L+L   V  ++ +   DL 
Sbjct: 228 FAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLI 287

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
             +   AL+DM  KCG+++ A   F  M  +DV+S+ +M+ GL+ +G+ RQA+ LF+ M 
Sbjct: 288 LNN---ALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMK 344

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
             G  P+ +    VL ACSH GLVE GW +F +M+ ++ + P  EHY C++DLLGR G L
Sbjct: 345 ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRL 404

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
             A +L++ M  EP +  W  LLGAC+++ +++L    A ++ ELEP++AG+Y+LLSNIY
Sbjct: 405 DEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIY 464

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A   RW DV  VR  M  RG+RK PGCS
Sbjct: 465 ANTQRWEDVAEVRKTMTNRGIRKTPGCS 492



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 207/417 (49%), Gaps = 35/417 (8%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LIK C  +  + +   VH HI  KG E    +V   +++ +     L  +  +F+ +   
Sbjct: 61  LIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNM-YVKFNLLEEAEDLFDEMPER 119

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   W T++  YS N    +     + + RE   P+ +T+  V++AC  + ++R+   +H
Sbjct: 120 NVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQ---LH 175

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +I+ G++ DVFV ++LID+Y K  ++  A  VFDEMP R++V W ++I G+A   D  
Sbjct: 176 CGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGN 235

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVK----IGDLRSARQL------FDEMPERNVVSYTT 269
           EA  +F  M     ++  A +  +++    +  L   RQ+      FD+    +++    
Sbjct: 236 EALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQ----DLILNNA 291

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +ID Y K G +  A S F    ++DV++WS +++G AQNG   +A+++F  M     +P+
Sbjct: 292 LIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPN 351

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSH-----MDLSRAHVIAALVDMNAKCGNMDR 384
              ++ ++ ACS  G ++   W   Y  RS      +D  R H    L+D+  + G +D 
Sbjct: 352 YITVLGVLFACSHAGLVE-KGW---YYFRSMKKLFGVDPGREHY-GCLIDLLGRAGRLDE 406

Query: 385 AAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
           A +L   M    D V++ +++    +H +   A+    +++   L P++    I+L+
Sbjct: 407 AVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE--LEPEDAGTYILLS 461



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 190/410 (46%), Gaps = 54/410 (13%)

Query: 42  TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
           ++++ C    +L Q+H  IIK GLE D  + +  I + +S  + L  +  VF+ +   + 
Sbjct: 160 SVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDV-YSKWSDLDNALGVFDEMPTRDL 218

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            +WN+++ G++QNS   E   +F R+ R   + D+ T   V++AC+ +  +  G  +H  
Sbjct: 219 VVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVH 278

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           V+++  D+D+ +  +LID+Y K   +  A   F  M E++V+SW+ M+ G A  G   +A
Sbjct: 279 VLKF--DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQA 336

Query: 222 KTVFDLMPER-SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID-GYAKVGD 279
             +F+ M E  S  ++  ++G L                      S+  +++ G+     
Sbjct: 337 LELFESMKESGSRPNYITVLGVLF-------------------ACSHAGLVEKGWYY--- 374

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
             S + LF   P R+   +  LI    + G+ DEAVK+  +M     +PD     +L+ A
Sbjct: 375 FRSMKKLFGVDPGRE--HYGCLIDLLGRAGRLDEAVKLIHEM---ECEPDSVTWRTLLGA 429

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDL--SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           C    N+DL+     Y ++  ++L    A     L ++ A     +  AE+ +TM NR +
Sbjct: 430 CRVHRNVDLA----IYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGI 485

Query: 398 VSY--CSMIK----------GLSIHGHGRQAVS----LFDRMLSEGLTPD 431
                CS I+          G + H    + V     L +R++  G  PD
Sbjct: 486 RKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPD 535


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 309/551 (56%), Gaps = 14/551 (2%)

Query: 33  KPSCLLSALTLIKKCK--LQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           KP  +  A  L   C   +  +  Q+H  +++ GL+    LV + +   +S    L  + 
Sbjct: 108 KPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDF-VPLVGNTLVTVYSKGRQLGDAR 166

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            +F+ +   +  +WN ++ GY QN    +   +F  +I     PD  TF   + + +   
Sbjct: 167 KLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESS 226

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           S+++   IH  ++R GV  DV++ ++LIDLY K ++   A K+F+   + ++V +TAMI 
Sbjct: 227 SLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMIS 286

Query: 211 GYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLF-----DEMPE 261
           GY   G   +A  +F  + ++  +    ++++++     +  ++  R+L      +E+ E
Sbjct: 287 GYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEE 346

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           +  V  + +++ YAK G +  A  +F     +D + W+++I+ ++Q+G+P+EA+ +F  M
Sbjct: 347 KCPVG-SAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQM 405

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             + V+ D   + + +SAC+ +  L     +  ++ +   + S    ++AL++M AKCG 
Sbjct: 406 GMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFE-SDLFDMSALINMYAKCGK 464

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           ++ A  +F  M  ++ V++ S+I     HG+   +++LF  ML EG+ PD + F  +L++
Sbjct: 465 LNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSS 524

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C H G VEDG R+F  M   Y I    EHYACM DL GR GHL  A+E++ SMP  P AS
Sbjct: 525 CGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAAS 584

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WG LLGAC+++ ++EL E+ +  L +LEP+N+G Y+LL+++ A A +W  V  ++  MK
Sbjct: 585 VWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMK 644

Query: 562 ERGLRKIPGCS 572
           ERG++K+PGCS
Sbjct: 645 ERGVQKVPGCS 655



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 230/463 (49%), Gaps = 14/463 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +   I++ G + D  + +  I L ++    +  +   F+++++ +  LWN ++ GY Q  
Sbjct: 32  IQDMILEMGFDLDMFVASSLIKL-YADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCG 90

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIK-ACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
                  +F  ++  EA PD  TF  V+  +CS  + V  G  +H  V+R G+D    VG
Sbjct: 91  ESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAM-VEYGRQLHGLVVRSGLDFVPLVG 149

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS-- 232
            +L+ +Y K +++  ARK+FD MP+ ++V W  MI GY   G + +A  +F+ M      
Sbjct: 150 NTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIK 209

Query: 233 --NVSWNALIGGLVKIGDLRSARQLFDEMPERNVV----SYTTMIDGYAKVGDMTSARSL 286
             ++++ + +  L +   L+  +++   +    V+      + +ID Y K  D   A  +
Sbjct: 210 PDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKM 269

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F  +   D+V ++A+ISGY  NG   +A++IF  +  K + P+     S++ AC+ +  +
Sbjct: 270 FNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAI 329

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
            L   +  Y+ ++ ++  +  V +A+++M AKCG +D A  +F  +  +D + + S+I  
Sbjct: 330 KLGRELHGYIIKNELE-EKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITS 388

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            S  G   +A+ LF +M  EG+  D V  +  L+AC+++  +  G      M    A   
Sbjct: 389 FSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKG-AFES 447

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                + ++++  + G L  A  + N M  E +  AW +++ A
Sbjct: 448 DLFDMSALINMYAKCGKLNIARLVFNLMQ-EKNEVAWNSIIAA 489



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 171/326 (52%), Gaps = 9/326 (2%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PDKYTFP VIK C+ + +VR G  I   ++  G D D+FV +SLI LY     I  AR+ 
Sbjct: 8   PDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRF 67

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERS---NVSWNALIGGLVKIGDL 249
           FD+M +++ V W  MI GY   G+   A  +F D+M   +   +V++  ++        +
Sbjct: 68  FDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMV 127

Query: 250 RSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
              RQL   +    +    +   T++  Y+K   +  AR LF+  P  D+V W+ +I GY
Sbjct: 128 EYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGY 187

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            QNG  D+A  +F++M S  ++PD     S + + ++  +L     +  Y+ R H  +  
Sbjct: 188 VQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR-HGVILD 246

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
            ++ +AL+D+  KC +   A ++F      D+V Y +MI G  ++G  + A+ +F  +L 
Sbjct: 247 VYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQ 306

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDG 451
           + + P+ + F+ +L AC+ +  ++ G
Sbjct: 307 KKMIPNALTFSSILPACAGLAAIKLG 332


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 278/493 (56%), Gaps = 16/493 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +FN +   N   WN ++ GY  N    +    F  + + ++   +     +I+    V +
Sbjct: 174 LFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEA 233

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--------ERNVV 203
            R        V   G  + V    +LI  YG++     ARK+FD +P         RNV+
Sbjct: 234 ERILLQYGGNV---GKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVI 290

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           SW +MI+ Y   GD+V A+ +FD M ER   SWN +I G V+I D++ A  LF  MPE +
Sbjct: 291 SWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPD 350

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
            +S+  MI G++++G +  A  LF+  P++ +V+W+++ISGY +N     A+ IF  M  
Sbjct: 351 TLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQL 410

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNM 382
           +  +PD   L S++SAC+ + +L L   +   ++++ + DL    +  +LV M ++CG +
Sbjct: 411 EGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLP---INNSLVTMYSRCGAI 467

Query: 383 DRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
             A  +F+ M   RDV+S+ +MI G + HG   +A+ LFD M    + P  + F  VL A
Sbjct: 468 VEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNA 527

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C+H GL+E+G R F +M N + I P  EHYA +VD++GR G L+ A  L+NSMP EP  +
Sbjct: 528 CAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKA 587

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALLGACK+++++E+    A  L +L+P+++  YVLL N+YA   RW D   +R+ M+
Sbjct: 588 VWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMME 647

Query: 562 ERGLRKIPGCSSL 574
           +  ++K  G S +
Sbjct: 648 KNNVQKDAGYSRV 660



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 189/405 (46%), Gaps = 40/405 (9%)

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           VP+ Y+    I        + E   +  +   W    +      +I  Y KR+E+  AR+
Sbjct: 54  VPEFYSLNKKISYLIRTGRINEARELFDSTEHW----NTITWNRMITAYVKRREMLKARQ 109

Query: 193 VFDEMPERNVVSWTAMIVGYASVG-DLVE-AKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
           +F+EMP R++VSW  M+ GY S G   VE A+ +FD MPE   VSWN ++ G  K G + 
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMD 169

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
            A +LF+EMPERNVVS+  M+ GY   G +  A   F+  P RD  +  AL+SG  QN +
Sbjct: 170 KAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDK 229

Query: 311 PDEAVKIFSDMCSKNVQPDEFI--LVSLMSACSQVGNLDLSNWVDSYLSRSHMD------ 362
             EA +I       NV   + +    +L++   Q G         +Y +R   D      
Sbjct: 230 LVEAERILLQY-GGNVGKGDLVDAYNTLIAGYGQKGM--------AYEARKLFDRIPLCC 280

Query: 363 ---LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
               SR +VI+  +++    + G++  A ELF+ M  RD  S+ +MI G       ++A 
Sbjct: 281 DCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEAS 340

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
           +LF RM      PD +++ ++++  S +G ++     F+ +        S   +  M+  
Sbjct: 341 NLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDLFKRIPE-----KSLVSWNSMISG 391

Query: 478 LGRTGHLKSAYELLNSMPVE---PHASAWGALLGACKLYSDIELG 519
             +    K A  +   M +E   P      ++L AC    D+ LG
Sbjct: 392 YEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLG 436



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 200/462 (43%), Gaps = 92/462 (19%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+   + NT  WN ++  Y +    ++   +F      E +P++      +    ++  
Sbjct: 79  LFDSTEHWNTITWNRMITAYVKRREMLKARQLF------EEMPNRDIVSWNLMLSGYISC 132

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
             +       +     + D     +++  Y K   +  A ++F+EMPERNVVSW AM+ G
Sbjct: 133 GGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSG 192

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-------------------IGDL--- 249
           Y   G + +A   F LMP+R + S  AL+ GL++                    GDL   
Sbjct: 193 YLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDA 252

Query: 250 --------------RSARQLFDEMP--------ERNVVSYTTMIDGYAKVGDMTSARSLF 287
                           AR+LFD +P         RNV+S+ +MI  Y + GD+ SAR LF
Sbjct: 253 YNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELF 312

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +   +RD  +W+ +ISGY Q     EA  +FS M     +PD      ++S  S++G+L 
Sbjct: 313 DKMVERDTFSWNTMISGYVQILDMKEASNLFSRM----PEPDTLSWNMMISGFSEIGSLK 368

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L                                    A +LF+ +P + +VS+ SMI G 
Sbjct: 369 L------------------------------------AHDLFKRIPEKSLVSWNSMISGY 392

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
             +   + A+++F +M  EG  PD    + +L+AC+ +  +  G +  + +   + I   
Sbjct: 393 EKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAF-IADL 451

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           P + + +V +  R G +  A  + + M ++    +W A++G 
Sbjct: 452 PINNS-LVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGG 492



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 166/369 (44%), Gaps = 63/369 (17%)

Query: 78  LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137
           +C+  A  +  +  +F+++V  +TF WNT++ GY Q     E   +F R+      PD  
Sbjct: 297 MCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPE----PDTL 352

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           ++ ++I   S + S++    +   +     ++ +    S+I  Y K ++   A  +F +M
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRI----PEKSLVSWNSMISGYEKNEDYKGAMNIFLQM 408

Query: 198 ------PERNVVSW--------------------------------TAMIVGYASVGDLV 219
                 P+R+ +S                                  +++  Y+  G +V
Sbjct: 409 QLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIV 468

Query: 220 EAKTVFDLMP-ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGY 274
           EA+ VFD M  +R  +SWNA+IGG    G    A QLFD M + NV    +++ ++++  
Sbjct: 469 EARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNAC 528

Query: 275 AKVGDMTSARSLFEAAPDR-----DVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQP 328
           A  G +   R  F +  +       V  ++AL+    ++GQ +EA+ + + M C    +P
Sbjct: 529 AHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPC----EP 584

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D+ +  +L+ AC    N++++      L +   + S  +V+  L +M A  G  D AAE+
Sbjct: 585 DKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVL--LHNMYADVGRWDDAAEM 642

Query: 389 FETMPNRDV 397
              M   +V
Sbjct: 643 RTMMEKNNV 651


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 177/504 (35%), Positives = 284/504 (56%), Gaps = 53/504 (10%)

Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA-----IHAAVIRWGVDEDVFV 173
           E    +VR++   A PD YTFP ++KA +         A     IHA V+++G++ +   
Sbjct: 34  EAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHA 93

Query: 174 GTSLIDLY-------------------------------------GKRKEISCARKVFDE 196
            +SLI +Y                                       R E+SC    F +
Sbjct: 94  ASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCS--FVD 151

Query: 197 MPERNV----VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS----WNALIGGLVKIGD 248
           M   +     V++ +++       DL+    V   + E   +      NAL+    + GD
Sbjct: 152 MVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGD 211

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           + +A  LF+ M  R++ S+T++I G  + G +  AR LF+  P+RD +AW+A+I GY Q 
Sbjct: 212 MDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQV 271

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G+  +A++ F  M    V+ DEF +VS+++AC+Q+G L+   W   Y+ R  + +    V
Sbjct: 272 GRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMD-VFV 330

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             AL+DM +KCG+++RA ++F+ M NRD  ++ ++I GL+++G G +A+ +F RML    
Sbjct: 331 GNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQ 390

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
           TPDEV F  VLTAC+H GLV+ G  FF +M   Y I P+  HY C++D+LGR G LK A 
Sbjct: 391 TPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEAL 450

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           + ++ MP++P+++ WG LL +C++Y + E+GEL A RL EL+P N+ +Y+LLSN+YA ++
Sbjct: 451 DTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSN 510

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW DV  +R  + E+G++K PGCS
Sbjct: 511 RWKDVRRIRQIIMEKGIKKEPGCS 534



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 194/430 (45%), Gaps = 49/430 (11%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT---FLWNTLLKGYS 112
           +H+H++K G+E +    +  I +  +     +    +    +        +WN L+ G++
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           ++ RF      FV ++R  A+    T+  V+ AC     +  G  +H  V+  GV  D  
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           V  +L+D+Y +  ++  A  +F+ M  R++ SWT++I G    G +  A+ +FD MPER 
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERD 257

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMP-------ERNVVSYTT---------------- 269
            ++W A+I G V++G  R A + F  M        E  +VS  T                
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317

Query: 270 ----------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
                           +ID Y+K G +  A  +F+   +RD   W+A+I G A NG+ +E
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AA 371
           A+ +F  M      PDE   V +++AC+  G +D     + +LS +        V+    
Sbjct: 378 AIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGR--EFFLSMTEAYNISPTVVHYGC 435

Query: 372 LVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           L+D+  + G +  A +  + MP + +   + +++    ++G+        +R+L   L P
Sbjct: 436 LIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLE--LDP 493

Query: 431 DEVAFTIVLT 440
           D     I+L+
Sbjct: 494 DNSTAYILLS 503



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 61/275 (22%)

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS- 338
           ++ ARSL +  P R   A S+ +SG+      +EAV  +  M +   +PD +   SL+  
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSVSGHG----AEEAVAGYVRMLAGGARPDAYTFPSLLKA 60

Query: 339 ----ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM------------------- 375
                 + V    +   + +++ +  M+ S AH  ++L+ M                   
Sbjct: 61  AAAARGAAVAAASVGGAIHAHVVKFGME-SNAHAASSLIVMYAARGDGAAARAVLEAACL 119

Query: 376 ----------NAKCGNMDRAA----------ELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
                     NA     +R+           ++         V+Y S+   LS  G G+ 
Sbjct: 120 ATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSV---LSACGKGKD 176

Query: 416 ---AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
               + +  R+L  G+ PD+     ++   +  G ++  W  FE MQ     + S   + 
Sbjct: 177 LLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQ-----MRSMASWT 231

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            ++  L R+G +  A +L + MP E    AW A++
Sbjct: 232 SVISGLVRSGQVDRARDLFDHMP-ERDTIAWTAMI 265


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 257/479 (53%), Gaps = 68/479 (14%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           VF+ +   NT  WN+LL G S++ SR +E   +F      + +P+  TF   I       
Sbjct: 83  VFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF------DEIPEPDTFSYNI------- 129

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
                                     ++  Y +      A+  FD MP ++  SW  MI 
Sbjct: 130 --------------------------MLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMIT 163

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
           GYA  G++ +A+ +F  M E++ VSWNA+I G ++ GDL  A   F   P R VV++T M
Sbjct: 164 GYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAM 223

Query: 271 IDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           I GY K   +  A ++F +   ++++V W+A+ISGY +N +P++ +K+F  M  + ++P+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              L S +  C+                           + +L+ M  KCG +  A +LF
Sbjct: 284 SSGLSSALLGCT---------------------------LTSLISMYCKCGELGDAWKLF 316

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           E M  +DVV++ +MI G + HG+  +A+ LF  M+   + PD + F  VL AC+H GLV 
Sbjct: 317 EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 376

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            G  +FE+M   Y + P P+HY CMVDLLGR G L+ A +L+ SMP  PHA+ +G LLGA
Sbjct: 377 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGA 436

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
           C+++ ++EL E  A +L +L  QNA  YV L+NIYA+ +RW DV  VR +MKE  + K+
Sbjct: 437 CRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKV 495



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 53/331 (16%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C+        + + F+R+   +   WNT++ GY++     +   +F  ++ +  V     
Sbjct: 133 CYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVS---- 188

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
                                     W          ++I  Y +  ++  A   F   P
Sbjct: 189 --------------------------W---------NAMISGYIECGDLEKASHFFKVAP 213

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            R VV+WTAMI GY     +  A+ +F D+   ++ V+WNA+I G V+        +LF 
Sbjct: 214 VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFR 273

Query: 258 EMPERNV-------------VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
            M E  +              + T++I  Y K G++  A  LFE    +DVVAW+A+ISG
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 333

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           YAQ+G  D+A+ +F +M    ++PD    V+++ AC+  G +++       + R +    
Sbjct: 334 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 393

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           +      +VD+  + G ++ A +L  +MP R
Sbjct: 394 QPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 424



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 157/337 (46%), Gaps = 37/337 (10%)

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVK-IGDLRSARQLFDEMPERNVVSYTTMIDGY 274
           GD+  A  VF  M  ++ ++WN+L+ G+ K    +  A QLFDE+PE +  SY  M+  Y
Sbjct: 75  GDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCY 134

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            +  +   A+S F+  P +D  +W+ +I+GYA+ G+ ++A ++F  M  KN    E    
Sbjct: 135 VRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKN----EVSWN 190

Query: 335 SLMSACSQVGNLD-LSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFET 391
           +++S   + G+L+  S++      R         V+A  A++    K   ++ A  +F+ 
Sbjct: 191 AMISGYIECGDLEKASHFFKVAPVRG--------VVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 392 MP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE- 449
           M  N+++V++ +MI G   +      + LF  ML EG+ P+    +  L  C+   L+  
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSLISM 302

Query: 450 --------DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEP 498
                   D W+ FE M+    +      +  M+    + G+   A  L   M    + P
Sbjct: 303 YCKCGELGDAWKLFEVMKKKDVVA-----WNAMISGYAQHGNADKALCLFREMIDNKIRP 357

Query: 499 HASAWGALLGACKLYSDIELGELVAN---RLFELEPQ 532
               + A+L AC     + +G        R +++EPQ
Sbjct: 358 DWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQ 394



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 22/198 (11%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  +   +   WN ++ GY+Q+    +   +F  +I  +  PD  TF  V+ AC+H   
Sbjct: 315 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 374

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V  G A   +++R + V+      T ++DL G+  ++  A K+   MP R   +    ++
Sbjct: 375 VNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLL 434

Query: 211 GYASVGDLVE-----AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE------- 258
           G   V   VE     A+ +  L  + +         G V++ ++ +++  +++       
Sbjct: 435 GACRVHKNVELAEFAAEKLLQLNSQNA--------AGYVQLANIYASKNRWEDVARVRKR 486

Query: 259 MPERNVVSYTTM-IDGYA 275
           M E NVV    + + GY+
Sbjct: 487 MKESNVVKVERVKVPGYS 504


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 301/539 (55%), Gaps = 25/539 (4%)

Query: 52  HLHQVHSHIIKKGL--EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           HL Q+H  ++   +   +    ++  +  C + AT   Y+  +  ++   +  LW++L+ 
Sbjct: 16  HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIG 75

Query: 110 ----GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT--AIHAAVI 163
               G + N R    F  +  + R   +P ++TFP ++KA   V  +R+      HA ++
Sbjct: 76  HFSGGITLNRRL--SFLAYRHMRRNGVIPSRHTFPPLLKA---VFKLRDSNPFQFHAHIV 130

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           ++G+D D FV  SLI  Y        A ++FD   +++VV+WTAMI G+   G   EA  
Sbjct: 131 KFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMV 190

Query: 224 VFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDG 273
            F  M +++ V+ N     +++    K+ D+R  R +     E      +V   ++++D 
Sbjct: 191 YFVEM-KKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM 249

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K      A+ +F+  P R+VV W+ALI+GY Q+   D+ + +F +M   +V P+E  L
Sbjct: 250 YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTL 309

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            S++SAC+ VG L     V  Y+ ++ ++++       L+D+  KCG ++ A  +FE + 
Sbjct: 310 SSVLSACAHVGALHRGRRVHCYMIKNSIEINTT-AGTTLIDLYVKCGCLEEAILVFERLH 368

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++V ++ +MI G + HG+ R A  LF  MLS  ++P+EV F  VL+AC+H GLVE+G R
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F +M+  + + P  +HYACMVDL GR G L+ A  L+  MP+EP    WGAL G+C L+
Sbjct: 429 LFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLH 488

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            D ELG+  A+R+ +L+P ++G Y LL+N+Y+ +  W +V  VR +MK++ + K PG S
Sbjct: 489 KDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFS 547


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 269/472 (56%), Gaps = 45/472 (9%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG--KRKEISCARKVFDEMPE 199
           +++ CS++  +R+   IH  +++ G+  D    + L+          ++ AR VFD +  
Sbjct: 24  LLQRCSNMEELRQ---IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLM-------------------------PERSNV 234
            N   W  MI GY++  +  EA  ++  M                          E   +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 235 --------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                         + N+L+    K GD++SAR LFD++ +R+ VS+ +MIDGY K G++
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A  +F   P+R++++W+++ISG    G+P EA+ +F  M +  ++ D   LVS + AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           + +G LD   W+ +Y+ +  +++    +   L+DM AKCG+++ A E+F  M  + V  +
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPI-LGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI G +IHG GR+A+  F +M + G+ P+++ FT +LTACSH GLV +    FE+M+ 
Sbjct: 320 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 379

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
           ++   PS EHY CMVDLLGR G LK A EL+ +MPV+P+A+ WGALL AC ++ ++ELG+
Sbjct: 380 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +   L +++P + G Y+ L++I+A A  W     VR +MKE+G+ K+PGCS
Sbjct: 440 QIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 210/421 (49%), Gaps = 44/421 (10%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL-ATPLSYSTAVFNRIV 97
             L L+++C     L Q+H  ++K GL  D    +  ++ C S  +  L+Y+  VF+RI 
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIF 79

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            PNTF+WNT+++GYS +    E   ++  ++      + YTFP ++KACS + +  E   
Sbjct: 80  RPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQ 139

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA +I+ G   +++   SL+++Y K  +I  AR +FD++ +R+ VSW +MI GY   G+
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTT--- 269
           +  A  +F+ MPER+ +SW ++I G V  G  + A  LF  M        NV   +T   
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259

Query: 270 -------------------------------MIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                                          +ID YAK GD+  A  +F    ++ V  W
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+ISGYA +G+  EA++ F  M +  V+P++     +++ACS  G +  +  +   + R
Sbjct: 320 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 379

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH---GR 414
            H           +VD+  + G +  A EL E MP + +   + +++    IHG+   G+
Sbjct: 380 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439

Query: 415 Q 415
           Q
Sbjct: 440 Q 440



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H++I K  +E D  L    I + ++    L  +  VF ++      +W  ++ GY+ + 
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDM-YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
           R  E    F+++      P++ TF  ++ ACSH   V E   +  ++ R  G    +   
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 175 TSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDLVEAKTVFDLM 228
             ++DL G+   +  A ++ + MP + N   W A++      G+L   K +  ++
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL 445


>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
          Length = 612

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 244/388 (62%), Gaps = 2/388 (0%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           +  AR++FDEMPER+VVS+ +M+ GY + GDL  A+ +FD M  R  V+WN++I G  + 
Sbjct: 173 LPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMARRDVVTWNSMISGYSRH 232

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +AR++FD MPER+VVS+ +M+DGYA+ GD+  AR +F+  P R +V+W+ +++ YA
Sbjct: 233 GDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYA 292

Query: 307 QNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLS 364
           +     E + +F  M ++ N  P+E   VS+++AC+ +G+L+   WV D    R    + 
Sbjct: 293 KLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVP 352

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              ++  L+ M AKCG M+ A E+F +M  + V S+ SMI G  +HG   +A+ LF  M 
Sbjct: 353 DVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEME 412

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
            +G  P+E  F  VL++C+H GLV +GW  F+ M   Y+I P  EH+ CM+DLLGR G L
Sbjct: 413 RDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLL 472

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
           + +  L+ ++  +   + WG L+ A +  ++I+LGE V  +L E+ P   G Y+LLSNIY
Sbjct: 473 EQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIY 532

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A   RW DV  VR  M+E+G+ K  G S
Sbjct: 533 AAEGRWDDVEKVRKVMEEKGVEKDAGLS 560



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 206/456 (45%), Gaps = 65/456 (14%)

Query: 21  PNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFI 76
           P  +R    + P+P  + +  TL++ C L+  L      +  +  E+D    +S+VA ++
Sbjct: 142 PASARRLLADIPRPDAV-TWNTLLRAC-LRLGLLPAARRLFDEMPERDVVSYNSMVAGYV 199

Query: 77  SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           +        L+ +  +F+ +   +   WN+++ GYS++        +F      +A+P++
Sbjct: 200 A-----EGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMF------DAMPER 248

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
                                            DV    S++D Y +  ++  AR VFD 
Sbjct: 249 ---------------------------------DVVSWNSMLDGYAQAGDVEMARLVFDG 275

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRS 251
           MP+R++VSW  ++  YA + D  E   +FD+M    N   N     +++     +GDL  
Sbjct: 276 MPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEK 335

Query: 252 ARQLFDEMPER------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            R + D + ER      +V+  TT++  YAK G M +AR +F +  ++ V +W+++I GY
Sbjct: 336 GRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGY 395

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
             +GQ ++A+++F +M     +P+E   + ++S+C+  G +    W    + R +    +
Sbjct: 396 GLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPK 455

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
           +     ++D+  + G ++++  L E +  +   +   ++   S   +  +      + L 
Sbjct: 456 SEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLI 515

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           E + P EV   I+L   S++   E  W   E ++ V
Sbjct: 516 E-MRPTEVGPYILL---SNIYAAEGRWDDVEKVRKV 547


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 273/473 (57%), Gaps = 47/473 (9%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI----DLYGKRKEISCARKVFDEMP 198
           ++ CS +  ++    IHA +IR  +  DVF  + LI    D       I  A ++F ++ 
Sbjct: 24  LETCSDLTHLK---IIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVF------DLMP----------------------- 229
             N+  + AMI G++   +  +A   +       L+P                       
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140

Query: 230 ----------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
                     E+     N+L+      GD  +A  +F  M   +VVS+T+MI G+ K GD
Sbjct: 141 AHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGD 200

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           + SAR LF+  P++++V WS +ISGYAQN   D+AV++F  + S+ V+ +E ++VS++S+
Sbjct: 201 VESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISS 260

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G L+L      Y+ ++ M L+   +  ALVDM A+CG++D+A  +FE +P RD +S
Sbjct: 261 CAHLGALELGERAHDYVVKNGMTLNLI-LGTALVDMYARCGSIDKAVWVFEDLPERDTLS 319

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + ++I GL++HG+  +++  F  M+  GLTP ++ FT VL+ACSH GLVE G++ FE+M+
Sbjct: 320 WTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMK 379

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             + + P  EHY CMVDLLGR G L+ A   +  MPV+P+A  WGALLGAC+++ + E+G
Sbjct: 380 RDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIG 439

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E V   L +L PQ++G YVLLSNIYA A  W  V  +R  MK +GL+K PG S
Sbjct: 440 ERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHS 492



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 196/392 (50%), Gaps = 42/392 (10%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC---HSLATPLSYSTAVFNRIVNPN 100
           ++ C   THL  +H+++I+  +  D    +  I+ C    S  + + Y++ +F++I NPN
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F++N +++G+S +    + F  +V+  R+  +PD  TFP ++K+C+ +  +  G+  H 
Sbjct: 84  LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            +I+ G ++DV+V  SL+ +Y    +   A  +F  M   +VVSWT+MI G+   GD+  
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVES 203

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD----------------------- 257
           A+ +FD MPE++ V+W+ +I G  +      A +LF                        
Sbjct: 204 ARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAH 263

Query: 258 ----EMPER------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
               E+ ER            N++  T ++D YA+ G +  A  +FE  P+RD ++W+AL
Sbjct: 264 LGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTAL 323

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           I+G A +G  + ++K F+ M    + P +    +++SACS  G ++    +   + R H 
Sbjct: 324 IAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHR 383

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
              R      +VD+  + G ++ A      MP
Sbjct: 384 VEPRLEHYGCMVDLLGRAGKLEEAERFVLKMP 415


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 274/474 (57%), Gaps = 39/474 (8%)

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
           + T   V+++C ++  V    +IHA +IR   D+D FV   LI +      +  A  VF 
Sbjct: 29  RKTLISVLRSCKNIAHV---PSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFS 85

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR----- 250
            +   NV  +TAMI G+ S G   +  +++  M   S +  N +I  ++K  DL+     
Sbjct: 86  YVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREI 145

Query: 251 ------------------------------SARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                                         +A+++FDEMP+R+ V+ T MI+ Y++ G +
Sbjct: 146 HAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFI 205

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A  LF+    +D V W+A+I G  +N + ++A+++F +M  +NV  +EF  V ++SAC
Sbjct: 206 KEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSAC 265

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           S +G L+L  WV S++    M+LS   V  AL++M ++CG+++ A  +F  M ++DV+SY
Sbjct: 266 SDLGALELGRWVHSFVENQRMELSN-FVGNALINMYSRCGDINEARRVFRVMRDKDVISY 324

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI GL++HG   +A++ F  M++ G  P++V    +L ACSH GL++ G   F +M+ 
Sbjct: 325 NTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKR 384

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
           V+ + P  EHY C+VDLLGR G L+ AY  + ++P+EP     G LL ACK++ ++ELGE
Sbjct: 385 VFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGE 444

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            +A RLFE E  ++G+YVLLSN+YA++ +W +   +R  M++ G+ K PGCS++
Sbjct: 445 KIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTI 498



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 225/460 (48%), Gaps = 46/460 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           +++++ CK   H+  +H+ II+   +QD  +V   I +C +L + + Y+  VF+ + NPN
Sbjct: 33  ISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDS-VDYAYDVFSYVSNPN 91

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            +L+  ++ G+  + R  +  +++ R+I    +PD Y    V+KAC     ++    IHA
Sbjct: 92  VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHA 147

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V++ G      VG  ++++YGK  E+  A+K+FDEMP+R+ V+ T MI  Y+  G + E
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKE 207

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY------------- 267
           A  +F  +  +  V W A+I GLV+  ++  A +LF EM   NV +              
Sbjct: 208 ALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSD 267

Query: 268 --------------------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
                                       +I+ Y++ GD+  AR +F    D+DV++++ +
Sbjct: 268 LGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTM 327

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ISG A +G   EA+  F DM ++  +P++  LV+L++ACS  G LD+   V + + R   
Sbjct: 328 ISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFN 387

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLF 420
              +      +VD+  + G ++ A    E +P   D +   +++    IHG+      + 
Sbjct: 388 VEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIA 447

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            R+  E   PD   + ++    +  G  ++     E+M++
Sbjct: 448 KRLF-ESENPDSGTYVLLSNLYASSGKWKESTEIRESMRD 486


>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 612

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 244/388 (62%), Gaps = 2/388 (0%)

Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
           +  AR++FDEMPER+VVS+ +M+ GY + GDL  A+ +FD M  R  V+WN++I G  + 
Sbjct: 173 LPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMARRDVVTWNSMISGYSRH 232

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           GD+ +AR++FD MPER+VVS+ +M+DGYA+ GD+  AR +F+  P R +V+W+ +++ YA
Sbjct: 233 GDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYA 292

Query: 307 QNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLS 364
           +     E + +F  M ++ N  P+E   VS+++AC+ +G+L+   WV D    R    + 
Sbjct: 293 KLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVP 352

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              ++  L+ M AKCG M+ A E+F +M  + V S+ SMI G  +HG   +A+ LF  M 
Sbjct: 353 DVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEME 412

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
            +G  P+E  F  VL++C+H GLV +GW  F+ M   Y+I P  EH+ CM+DLLGR G L
Sbjct: 413 RDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLL 472

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
           + +  L+ ++  +   + WG L+ A +  ++I+LGE V  +L E+ P   G Y+LLSNIY
Sbjct: 473 EQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNIY 532

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
           A   RW DV  VR  M+E+G+ K  G S
Sbjct: 533 AAEGRWDDVEKVRKVMEEKGVEKDAGLS 560



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 206/456 (45%), Gaps = 65/456 (14%)

Query: 21  PNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFI 76
           P  +R    + P+P  + +  TL++ C L+  L      +  +  E+D    +S+VA ++
Sbjct: 142 PASARRLLADIPRPDAV-TWNTLLRAC-LRLGLLPAARRLFDEMPERDVVSYNSMVAGYV 199

Query: 77  SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           +        L+ +  +F+ +   +   WN+++ GYS++        +F      +A+P++
Sbjct: 200 A-----EGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMF------DAMPER 248

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
                                            DV    S++D Y +  ++  AR VFD 
Sbjct: 249 ---------------------------------DVVSWNSMLDGYAQAGDVEMARLVFDG 275

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRS 251
           MP+R++VSW  ++  YA + D  E   +FD+M    N   N     +++     +GDL  
Sbjct: 276 MPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEK 335

Query: 252 ARQLFDEMPER------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            R + D + ER      +V+  TT++  YAK G M +AR +F +  ++ V +W+++I GY
Sbjct: 336 GRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGY 395

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
             +GQ ++A+++F +M     +P+E   + ++S+C+  G +    W    + R +    +
Sbjct: 396 GLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPK 455

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
           +     ++D+  + G ++++  L E +  +   +   ++   S   +  +      + L 
Sbjct: 456 SEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKLI 515

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           E + P EV   I+L   S++   E  W   E ++ V
Sbjct: 516 E-MRPTEVGPYILL---SNIYAAEGRWDDVEKVRKV 547


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 181/536 (33%), Positives = 288/536 (53%), Gaps = 18/536 (3%)

Query: 42  TLIKKC-KLQT--HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+  C KLQ      ++H H+I  G   D  L    + + ++    L  +  VF  +  
Sbjct: 15  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQM-YAKCGSLDDAKRVFEGMEI 73

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            + F W++++  Y++  R      ++ R+I E   P+  TF   +  C+ V  + +G AI
Sbjct: 74  KDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAI 133

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  ++   V +D  +  SL+++Y K  E+  ARKVF+ M  RNV S+TAMI  Y   G+ 
Sbjct: 134 HQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEH 193

Query: 219 VEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQLFDEMPER----NVVSYTT 269
            EA  +F  M +   +  NA     ++G +  +G+L   R++   +  R    NVV    
Sbjct: 194 AEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNA 253

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  Y K G    AR +F++   R+V++W+++I+ YAQ+G P EA+ +F  M   +V+P 
Sbjct: 254 LVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPS 310

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
                S ++AC+ +G LD    +   +  +H  L+   +  +L+ M A+CG++D A  +F
Sbjct: 311 GVSFSSALNACALLGALDEGREIHHRVVEAH--LASPQMETSLLSMYARCGSLDDARRVF 368

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M  RD  S  +MI   + HG  +QA+ ++ RM  EG+  D + F  VL ACSH  LV 
Sbjct: 369 NRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVA 428

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           D   FF+++   + +VP  EHY CMVD+LGR+G L  A EL+ +MP +  A AW  LL  
Sbjct: 429 DCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSG 488

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           CK + D+  GE  A ++FEL P     YV LSN+YA A R+ D   VR +M+ERG+
Sbjct: 489 CKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGV 544



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 199/372 (53%), Gaps = 17/372 (4%)

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           V DK+    ++ AC+ + ++ EG  +H  +I  G   D+ + T+L+ +Y K   +  A++
Sbjct: 7   VADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKR 66

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGD 248
           VF+ M  +++ +W+++I  YA  G    A  ++  M     E + V++   +GG   +  
Sbjct: 67  VFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAG 126

Query: 249 LRSARQ-----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           L   R      L  ++P+ +V+   ++++ Y K  +M  AR +FE    R+V +++A+IS
Sbjct: 127 LADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMIS 185

Query: 304 GYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            Y Q G+  EA+++FS M   + ++P+ +   +++ A   +GNL+    V  +L+    D
Sbjct: 186 AYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFD 245

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            +   V  ALV M  KCG+   A ++F++M  R+V+S+ SMI   + HG+ ++A++LF R
Sbjct: 246 -TNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKR 304

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M  E   P  V+F+  L AC+ +G +++G      +  V A + SP+    ++ +  R G
Sbjct: 305 MDVE---PSGVSFSSALNACALLGALDEGREIHHRV--VEAHLASPQMETSLLSMYARCG 359

Query: 483 HLKSAYELLNSM 494
            L  A  + N M
Sbjct: 360 SLDDARRVFNRM 371



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 53/249 (21%)

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL----SRSHMDLSRAHVIAALVDMN 376
           M  + +  D+FI+ SL++AC+++  L+    +  +L     R+ + L       AL+ M 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLE-----TALLQMY 55

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCG++D A  +FE M  +D+ ++ S+I   +  G G  AV L+ RM++EG+ P+ V F 
Sbjct: 56  AKCGSLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFA 115

Query: 437 IVLTACSHVGLVEDG-----------------------------------WRFFEAMQNV 461
             L  C+ V  + DG                                    + FE M+  
Sbjct: 116 CALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK-- 173

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGALLGACKLYSDIE 517
                +   Y  M+    + G    A EL + M     +EP+A  +  +LGA +   ++E
Sbjct: 174 ---ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLE 230

Query: 518 LGELVANRL 526
            G  V   L
Sbjct: 231 KGRKVHRHL 239


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 308/572 (53%), Gaps = 83/572 (14%)

Query: 43  LIKKCKLQT---HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LI+ C ++       QVH+H++K G + D  +    I+ C S+ + ++ +  VFN     
Sbjct: 219 LIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN-CFSVCSNMTDACRVFNESSVL 277

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           ++  WN++L GY      IE+  +      EEA    +  P                   
Sbjct: 278 DSVSWNSILAGY------IEIGNV------EEAKHIYHQMP------------------- 306

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI---------- 209
                   +  +    S+I L+G R  +  A K+FDEM E+++V+W+A+I          
Sbjct: 307 --------ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYE 358

Query: 210 ------VGYASVGDLVE-------------------AKTVFDLMPERSNVSW----NALI 240
                 VG   +G +V+                    K +  L  +    S+    NALI
Sbjct: 359 EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI 418

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
               K GD+  AR+LFDE    +++S+ +MI GY K   + +A+++F++ P++DVV+WS+
Sbjct: 419 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 478

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +ISGYAQN   DE + +F +M     +PDE  LVS++SAC+++  L+   WV +Y+ R+ 
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 538

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           + ++   +   L+DM  KCG ++ A E+F  M  + + ++ ++I GL+++G    ++ +F
Sbjct: 539 LTINVI-LGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 597

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
             M    +TP+E+ F  VL AC H+GLV++G   F +M + + I P+ +HY CMVDLLGR
Sbjct: 598 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 657

Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540
            G L+ A ELLN MP+ P  + WGALLGACK + D E+G  V  +L EL+P + G +VLL
Sbjct: 658 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLL 717

Query: 541 SNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           SNIYA+  +W DV  +R  M +  + KIPGCS
Sbjct: 718 SNIYASKGKWDDVLEIRGMMTKHRVLKIPGCS 749



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 204/430 (47%), Gaps = 65/430 (15%)

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
           + Y Q +     FT++  ++      D YT+PL+I+ACS   S  E   +H  V++ G D
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            DV+V  +LI+ +     ++ A +VF+E    + VSW +++ GY  +G++ EAK ++  M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
           PERS ++ N++I      G +  A +LFDEM E                           
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLE--------------------------- 338

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
               +D+V WSALI+ + QN   +EA++ F  M    V  DE + VS +SAC+ +  +++
Sbjct: 339 ----KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM-------------------------- 382
              + S LS      S  ++  AL+ M +KCG++                          
Sbjct: 395 GKLIHS-LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 453

Query: 383 -----DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
                D A  +F++MP +DVVS+ SMI G + +    + ++LF  M   G  PDE     
Sbjct: 454 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 513

Query: 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497
           V++AC+ +  +E G ++  A      +  +      ++D+  + G +++A E+   M +E
Sbjct: 514 VISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IE 571

Query: 498 PHASAWGALL 507
              S W AL+
Sbjct: 572 KGISTWNALI 581


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 167/498 (33%), Positives = 274/498 (55%), Gaps = 17/498 (3%)

Query: 92  VFNRIVN--PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
           V NR  +   N F +N L+ G+  N    +    +  + +   +PDKYTFP +IK    V
Sbjct: 14  VLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEV 73

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           + V +   IH  V + G+D D++VG+SL+  Y K + +  AR++FDE+P+R+VV W +M+
Sbjct: 74  MEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMV 133

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI----GDLRSARQLFDEMPERNVV 265
            GYA +G   EA  V   M +   +     + G++ +    GD  + R +   M +    
Sbjct: 134 NGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFD 193

Query: 266 SYTT----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           S  +    +ID Y K   +  A  +FE   ++D+ +W++++S        D  +++F  M
Sbjct: 194 SCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRM 253

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-------DLSRAHVIAALVD 374
               VQ D   + +++ ACS +  L     +  Y+  +         ++     I AL+D
Sbjct: 254 LGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMD 313

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M AKCG+M  A  +F  M NRD  S+  MI G  +HG+G +A+ +F  M   GL P+E+ 
Sbjct: 314 MYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEIT 373

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           F  VL ACSH G +  G +F   M+  + +VP+ +HY C++D+LGR G L+ AY+L  +M
Sbjct: 374 FVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTM 433

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
           P++ +   W ALL AC+LY +++L E+ A ++FEL P + G+YVL+SN Y  A R+ +V 
Sbjct: 434 PIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVL 493

Query: 555 LVRSKMKERGLRKIPGCS 572
            +R  M+++ ++K PGCS
Sbjct: 494 DIRHTMRQQDVKKTPGCS 511


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 303/573 (52%), Gaps = 42/573 (7%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L L    K  T   +VHS I    +  D +L    +S  ++    L     VF+ +  
Sbjct: 104 SVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSF-YATCGDLKEGRRVFDTMEK 162

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY---TFPLVIKACSH-VLS--- 151
            N +LWN ++  Y++   F E   +F +++ E+ +  K     F L  K C   V+S   
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLF-KIMVEKGIEGKRPESAFELFDKLCDRDVISWNS 221

Query: 152 ----------VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV----FDEM 197
                        G  I+  ++  G+D D+    S++        +S  + V        
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257
            ER +     ++  Y+  GDL  A  VF+ M ER+ VSW ++I G  + G    A +L  
Sbjct: 282 FERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 258 EMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAP----DRDVVAWSALISGYAQNG 309
           +M +     +VV+ T+++   A+ G + + + + +       + ++   +AL+  YA+ G
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCG 401

Query: 310 QPDEAVKIFSDMCSKNV----------QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
             + A  +FS M  K++          +PD   +  ++ AC+ +  L+    +  Y+ R+
Sbjct: 402 SMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRN 461

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
                R HV  ALVD+  KCG +  A  LF+ +P++D+VS+  MI G  +HG+G +A++ 
Sbjct: 462 GYSSDR-HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIAT 520

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F+ M   G+ PDEV+F  +L ACSH GL+E GWRFF  M+N + I P  EHYACMVDLL 
Sbjct: 521 FNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS 580

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           RTG+L  AYE + ++P+ P A+ WGALL  C+ Y DIEL E VA R+FELEP+N G YVL
Sbjct: 581 RTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVL 640

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           L+NIYA A++W +V  +R K+ ++GLRK PGCS
Sbjct: 641 LANIYAEAEKWEEVKRLREKIGKQGLRKNPGCS 673



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 193/433 (44%), Gaps = 87/433 (20%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  V++ C+ + S  +G  +H+ +    V  D  +G  L+  Y    ++   R+VFD M
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--------------------RSNVSWN 237
            ++NV  W  M+  YA +GD  E+  +F +M E                    R  +SWN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 238 ALIGGLVKIGDLRSARQLFDEMP------------------------------------- 260
           ++I G V  G       ++ +M                                      
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 261 --ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             ER +    T++D Y+K GD+  A  +FE   +R+VV+W+++I+GY ++G+ D A+K+ 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
             M  + V+ D   + S++ AC++ G+LD    V  Y+  ++M+ S   V  AL+DM AK
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME-SNLFVCNALMDMYAK 399

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG+M+ A  +F TM  +D++S+ +MI  L                      PD      V
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIGELK---------------------PDSRTMACV 438

Query: 439 LTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPV 496
           L AC+ +  +E G       ++N Y+   S  H A  +VDL  + G L  A  L + +P 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYS---SDRHVANALVDLYVKCGVLGLARLLFDMIPS 495

Query: 497 EPHASAWGALLGA 509
           +   S W  ++  
Sbjct: 496 KDLVS-WTVMIAG 507


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 269/472 (56%), Gaps = 45/472 (9%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG--KRKEISCARKVFDEMPE 199
           +++ CS++  +R+   IH  +++ G+  D    + L+          ++ AR VFD +  
Sbjct: 24  LLQRCSNMEELRQ---IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLM-------------------------PERSNV 234
            N   W  MI GY++  +  EA  ++  M                          E   +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 235 --------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
                         + N+L+    K GD++SAR LFD++ +R+ VS+ +MIDGY K G++
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
             A  +F   P+R++++W+++ISG    G+P EA+ +F  M +  ++ D   LVS + AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
           + +G LD   W+ +Y+ +  +++    +   L+DM AKCG+++ A E+F  M  + V  +
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPI-LGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI G +IHG GR+A+  F +M + G+ P+++ FT +LTACSH GLV +    FE+M+ 
Sbjct: 320 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 379

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
           ++   PS EHY CMVDLLGR G LK A EL+ +MPV+P+A+ WGALL AC ++ ++ELG+
Sbjct: 380 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +   L +++P + G Y+ L++I+A A  W     VR +MKE+G+ K+PGCS
Sbjct: 440 QIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 211/421 (50%), Gaps = 44/421 (10%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL-ATPLSYSTAVFNRIV 97
             L L+++C     L Q+H  ++K GL  D    +  ++ C S  +  L+Y+  VF+RI 
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIF 79

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
            PNTF+WNT+++GYS +    E   ++  ++      + YTFP ++KACS + ++ E   
Sbjct: 80  RPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQ 139

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA +I+ G   +++   SL+++Y K  +I  AR +FD++ +R+ VSW +MI GY   G+
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTT--- 269
           +  A  +F+ MPER+ +SW ++I G V  G  + A  LF  M        NV   +T   
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259

Query: 270 -------------------------------MIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                                          +ID YAK GD+  A  +F    ++ V  W
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+ISGYA +G+  EA++ F  M +  V+P++     +++ACS  G +  +  +   + R
Sbjct: 320 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 379

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH---GR 414
            H           +VD+  + G +  A EL E MP + +   + +++    IHG+   G+
Sbjct: 380 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439

Query: 415 Q 415
           Q
Sbjct: 440 Q 440



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H++I K  +E D  L    I + ++    L  +  VF ++      +W  ++ GY+ + 
Sbjct: 272 IHAYIKKHEIEIDPILGCVLIDM-YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVG 174
           R  E    F+++      P++ TF  ++ ACSH   V E   +  ++ R  G    +   
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 175 TSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDLVEAKTVFDLM 228
             ++DL G+   +  A ++ + MP + N   W A++      G+L   K +  ++
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL 445


>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
          Length = 540

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/487 (35%), Positives = 266/487 (54%), Gaps = 76/487 (15%)

Query: 128 IREEAVPD-KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--- 183
           +R + VP   +TF  +++AC+ +   R     H  ++R G   DVFV  +L+D+Y +   
Sbjct: 1   MRAQGVPPYGFTFTFLLRACALLGLPRPCGCFHGQIVRCGFGSDVFVQNALMDVYHRCGG 60

Query: 184 ----RKEISCARKVFDEM-------------------------------PERNVVSWTAM 208
                  +  AR+VFDEM                               PERNVVSW  +
Sbjct: 61  GGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTV 120

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
           + G+A +GD+V A  VFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T
Sbjct: 121 VAGFARMGDMVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWT 180

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQ 327
            M+  YAK+GD+ +A  LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +
Sbjct: 181 AMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFR 240

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PDE  LVS++SAC+Q+G+++  NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  
Sbjct: 241 PDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAQS 299

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  M  R ++++ +MI G + +G  R A+ +++ M  EG+  D+  F   L AC+H GL
Sbjct: 300 IFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGL 359

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +++GW  F  M   Y I P  EHY CMVDLLGR                           
Sbjct: 360 LQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRA-------------------------- 393

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
                    EL E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K
Sbjct: 394 ---------ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEK 444

Query: 568 IPGCSSL 574
           +PG SS+
Sbjct: 445 VPGSSSI 451



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIK 144
           L  +  +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ 
Sbjct: 192 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 251

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +  +   V +G +LID++ K  ++  A+ +F +M  R +++
Sbjct: 252 ACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 311

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT MI G+A  G   +A  V++ M     +  +  + A +      G L+    +F+EM 
Sbjct: 312 WTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMV 371

Query: 261 ERNVVS-----YTTMID 272
           ER  +      Y  M+D
Sbjct: 372 ERYNIQPRMEHYGCMVD 388


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 303/576 (52%), Gaps = 84/576 (14%)

Query: 80  HSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV--PD 135
           +++A  L  S A F+ +     +T L N ++  +++ S      ++F  L+  +    PD
Sbjct: 99  YAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPD 158

Query: 136 KYTFPLVIKACS--HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC---A 190
            Y+F  ++ A    H L+V   T +H AV + G    + V  +LI LY K         A
Sbjct: 159 DYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDA 218

Query: 191 RKVFDEMPERNVVSWT-------------------------------AMIVGYASVGDLV 219
           RKV DEMPE++ ++WT                               AMI GY   G   
Sbjct: 219 RKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCA 278

Query: 220 EAKTVF-------------------------------------------DLMPERSNVSW 236
           EA  +F                                           D +PE +    
Sbjct: 279 EAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVN 338

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           NAL+    K G +  A ++FD M  ++VVS+ T++ GY + G + +A  +F+  P +  +
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL 398

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W  ++SGY   G  ++A+K+F+ M S++V+P ++     ++AC ++G L     + ++L
Sbjct: 399 SWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHL 458

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            +   + S +    AL+ M A+CG +  A  +F  MPN D VS+ +MI  L  HGHGR+A
Sbjct: 459 VQCGFEASNS-AGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREA 517

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           + LFD+M+++G+ PD ++F  +LTAC+H GLV+DG+++FE+M+  + I P  +HYA ++D
Sbjct: 518 LELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLID 577

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
           LLGR G +  A +L+ +MP EP  + W A+L  C++  D+ELG   A++LF++ P++ G+
Sbjct: 578 LLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGT 637

Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           Y+LLSN Y+ A RW+D   VR  M++RG++K PGCS
Sbjct: 638 YILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCS 673



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           H  Q+H+H+++ G E  +S     +++ ++    +  +  VF  + N ++  WN ++   
Sbjct: 450 HGKQLHAHLVQCGFEASNSAGNALLTM-YARCGAVKDARLVFLVMPNVDSVSWNAMISAL 508

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVD-- 168
            Q+    E   +F +++ +   PD+ +F  ++ AC+H   V +G     ++ R +G+   
Sbjct: 509 GQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPG 568

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDL----VEAKT 223
           ED +    LIDL G+   I  AR +   MP E     W A++ G    GD+      A  
Sbjct: 569 EDHY--ARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQ 626

Query: 224 VFDLMPE 230
           +F ++PE
Sbjct: 627 LFKMVPE 633


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 296/536 (55%), Gaps = 19/536 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--NPNTFLWNTLLKGYS 112
           ++H+H++K         +   I++ +S  + + +S  VFN     N N F +N L+ G+ 
Sbjct: 50  ELHTHLLKNAFFGSPLAITSLINM-YSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGFL 108

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
            N+       ++ ++      PDK+TFP VI+AC         T IH  + + G++ DVF
Sbjct: 109 ANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVF 168

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           VG++L++ Y K + +  A +VF+E+P R+VV W AM+ G+A +G   EA  VF  M    
Sbjct: 169 VGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNG 228

Query: 233 NVSWNALIGGLVKI----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSAR 284
            V     + G++ I    GD  + R +   +     E  VV    +ID Y K   +  A 
Sbjct: 229 VVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDAL 288

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQV 343
           S+FE   + D+ +W++++S + + G     +++F  M  S  VQPD   + +++ AC+ +
Sbjct: 289 SVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHL 348

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVI-------AALVDMNAKCGNMDRAAELFETMPNRD 396
             L     +  Y+  + +    +H +        AL+DM AKCGNM  A  +F  M  +D
Sbjct: 349 AALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKD 408

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           V S+  MI G  +HG+G +A+ +F RM    + P+E++F  +L+ACSH G+V++G  F  
Sbjct: 409 VASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLS 468

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
            M++ Y + PS EHY C++D+L R G L  AY+L+ +MP +     W +LL AC+L++D 
Sbjct: 469 EMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDT 528

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +L E+ A+++ ELEP + G+YVL+SN+Y    R+ +V   R  MK++ ++K PGCS
Sbjct: 529 DLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCS 584


>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
          Length = 745

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 170/476 (35%), Positives = 263/476 (55%), Gaps = 74/476 (15%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---RKEISCA 190
           P+ +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +      +  A
Sbjct: 109 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALVDVYHRCGGGGGVGAA 168

Query: 191 RKVFDEM-------------------------------PERNVVSWTAMIVGYASVGDLV 219
           R+VFDEM                               PERNVVSW  ++ G+A +GD+V
Sbjct: 169 RQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMV 228

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
            A+ VFD MP R+ VSWN +I G    GD+ +AR +FD M +++VVS+T M+  YAK+GD
Sbjct: 229 TARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 288

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSLMS 338
           + +   LF+  P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LVS++S
Sbjct: 289 LDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 348

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G+++  NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  +F  M  R ++
Sbjct: 349 ACAQLGSVEYCNWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAQSIFYKMETRCII 407

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ +MI G + +   R A+ +++ M  EG+  D+  F   L AC+H GL+++GW  F  M
Sbjct: 408 TWTTMISGFAFN---RDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEM 464

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
              Y I P  EHY CMVDLLGR                                    EL
Sbjct: 465 VERYNIQPRMEHYGCMVDLLGRA-----------------------------------EL 489

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            E V+ ++ ELEP N+   VL+SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 490 IEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSI 545



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIK 144
           L  +  +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ 
Sbjct: 289 LDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 348

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           AC+ + SV     I + + +  +   V +G +LID++ K  ++  A+ +F +M  R +++
Sbjct: 349 ACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 408

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP 260
           WT MI G+A   D   A  V++ M        +  + A +      G L+    +F+EM 
Sbjct: 409 WTTMISGFAFNRD---ALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMV 465

Query: 261 ERNVVS-----YTTMID 272
           ER  +      Y  M+D
Sbjct: 466 ERYNIQPRMEHYGCMVD 482



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 45/218 (20%)

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V P+ F    L+ AC+ +G       V   + R     S   V  ALVD+  +CG   
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFG-SDVFVQNALVDVYHRCGGGG 163

Query: 384 R---AAELFETMPNRDVVSYCSM-------------------------------IKGLSI 409
               A ++F+ M +RDVVS+ S+                               + G + 
Sbjct: 164 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 223

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
            G    A ++FDRM S     + V++ ++++  +  G VE     F+ M     +     
Sbjct: 224 MGDMVTARAVFDRMPSR----NAVSWNLMISGYATSGDVEAARSVFDRMDQKDVV----- 274

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
            +  MV    + G L +  EL + MPV+   S W A++
Sbjct: 275 SWTAMVSAYAKIGDLDTTNELFDHMPVKNLVS-WNAMI 311


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 277/492 (56%), Gaps = 14/492 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  VF+R+   +   W  LL  ++ +    E  T+F  +   + +   +T  L + A
Sbjct: 39  LSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQERDLIA--WTIMLTVLA 96

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
                S  E    H   +    + D+   T+++    +R ++  AR+ FD+MPERN+ SW
Sbjct: 97  ---TFSNIEDAKYHFDQM---PERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSW 150

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           T+++  Y   GD+  A  VFD MPE + V+W A++ G    GD+  A++ FD MPER+++
Sbjct: 151 TSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLI 210

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM---- 321
           ++T M+  YA  G +   R +F+  P+RD+++W+ +++   +N   +E+ ++F  M    
Sbjct: 211 AWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHC 270

Query: 322 -CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
             SK + P+    ++L+ ACS +G L     + + ++    D     V  ALV+   +CG
Sbjct: 271 ALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLV-VSNALVNFYGRCG 329

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  A  +F+ M  RDV+S+ SMI   +  G   +A+ L+ RMLSEG  PD++ F  VL 
Sbjct: 330 ALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLF 389

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACS+ G+VE    FF ++     + P+ EHYACMVD+LGR G L+ A +LL  MP  P  
Sbjct: 390 ACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGP 449

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             +  +L ACKLY+D+E GE  A  +FEL+P+N+  Y+ L+NIY+ A R  D   +R  M
Sbjct: 450 LLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLM 509

Query: 561 KERGLRKIPGCS 572
           +ERG++K PGCS
Sbjct: 510 EERGIKKKPGCS 521



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 180/338 (53%), Gaps = 27/338 (7%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D D F    ++ +Y +  ++S A+ VFD MP  ++ SWTA++  +A  G   EAKT+FD 
Sbjct: 20  DRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDT 79

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
           M ER  ++W  ++  L    ++  A+  FD+MPER++V++T M+   A+ G M +AR  F
Sbjct: 80  MQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETF 139

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           +  P+R++ +W++L+S Y ++G    A ++F  M   N+        ++++  S  G++ 
Sbjct: 140 DQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNL----VAWTAMLTGYSLSGDVV 195

Query: 348 LSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
            +        R+   +    +IA  A++   A  G++    E+F+ MP RD++S+ +M+ 
Sbjct: 196 RAK-------RAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVA 248

Query: 406 GLSIHGHGRQAVSLFDRM-----LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ- 459
            L  +    ++  LFDRM     LS+G+TP+ V F  +L ACS +G + +G +   A+  
Sbjct: 249 ALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAE 308

Query: 460 ---NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
              +   +V +      +V+  GR G L  A  + + M
Sbjct: 309 RGFDTDLVVSN-----ALVNFYGRCGALGDAKIVFDGM 341


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 270/455 (59%), Gaps = 46/455 (10%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA +IR     DVF  + LI +   +  +  A +VF ++   N+  + + I G++   D
Sbjct: 34  IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKD 93

Query: 218 -------LVEAKTVFDLMPERSNVSW---------------------------------- 236
                   V++K    L+P+  N+++                                  
Sbjct: 94  PDKSFHFYVQSKRN-GLVPD--NLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYV 150

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            N+L+     +GD++SA  +F  +   +VVS+T+M+ GY K GD+TSAR LF+  P++++
Sbjct: 151 QNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNL 210

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V WS +ISGYA+N   D+A++++  + S+ V  +E ++VS++++C+ +G L+L      Y
Sbjct: 211 VTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDY 270

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           + R+ M ++   +  ALVDM A+CG++D+A  +F+ +P RD +S+ ++I G ++HG+  +
Sbjct: 271 ILRNKMTVNLI-LGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEK 329

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+  F RM   GLTP E+ FT VL+ACSH GLVE G   FE+M+  Y I P  EHY CMV
Sbjct: 330 ALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMV 389

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DLLGR G L  A + +N MP++P+A  WGALLGAC+++ + E+ E     L EL+P+++G
Sbjct: 390 DLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSG 449

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
            YVLLSNIYA  ++W +V  +R  MKERG+ K PG
Sbjct: 450 YYVLLSNIYARTNKWENVENIRQMMKERGVVKPPG 484



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 192/392 (48%), Gaps = 40/392 (10%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L+ ++ C   +HL  +H+H+I+     D    +  IS+  +    L Y+  VF +I NPN
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISIN-KNLLDYAAQVFYQIQNPN 77

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F++N+ ++G+S +    + F  +V+  R   VPD  T+P ++KAC+   S+  G   H 
Sbjct: 78  LFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHG 137

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            +IR G D DV+V  SL+ +Y    +I  A  VF  +   +VVSWT+M+ GY   GD+  
Sbjct: 138 QIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTS 197

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD----------------------- 257
           A+ +FD MPE++ V+W+ +I G  K      A +L+                        
Sbjct: 198 ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAH 257

Query: 258 ----EMPER------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
               E+ ER            N++  T ++D YA+ G +  A  +F+  P RD ++W+ L
Sbjct: 258 LGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTL 317

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           I+G+A +G  ++A++ FS M    + P E    +++SACS  G ++    +   + R + 
Sbjct: 318 IAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYR 377

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
              R      +VD+  + G +  A +    MP
Sbjct: 378 IEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMP 409



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+++   +   W TL+ G++ +    +    F R+ +    P + TF  V+ ACSH   
Sbjct: 302 VFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGL 361

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
           V  G  +  ++ R + ++  +     ++DL G+  +++ A K  +EMP + N   W A++
Sbjct: 362 VERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALL 421

Query: 210 VGYASVGDLVE-----AKTVFDLMPERSN--VSWNALIGGLVKIGDLRSARQLFDEMPER 262
            G   +    E      KT+ +L PE S   V  + +     K  ++ + RQ+   M ER
Sbjct: 422 -GACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQM---MKER 477

Query: 263 NVV---SYTTM-IDGYAK---VGDMT 281
            VV    YT   +DG      +GD T
Sbjct: 478 GVVKPPGYTLFEMDGKVHKFTIGDKT 503



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 354 SYLSRSHMDLSRAHVI------AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           S+L   H  L RAH I      + L+ ++     +D AA++F  + N ++  Y S I+G 
Sbjct: 29  SHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGF 88

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           S      ++   + +    GL PD + +  ++ AC+  G ++ G
Sbjct: 89  SGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMG 132


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 179/582 (30%), Positives = 300/582 (51%), Gaps = 49/582 (8%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S LLS+ T +K         Q+H HII  G EQ   LV   ++   +    +       N
Sbjct: 104 SSLLSSCTDVKSL---AEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 95  -RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
             I++P  F WN L+  Y +N    +  + + +++++   PD +T+P V+KAC   L + 
Sbjct: 161 SNILHP--FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLG 218

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G  +H ++    +   + V  +LI +YGK  ++  AR +FD++PER+ VSW +MI  YA
Sbjct: 219 FGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYA 278

Query: 214 SVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE-------- 261
           S+G   EA  +F  M     E + + WN + GG ++ G+ + A +L  +M +        
Sbjct: 279 SMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSV 338

Query: 262 ------------------RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAA 290
                             + + S+               +I  Y++  D+  A  LF+  
Sbjct: 339 ALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLM 398

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
             + ++ W+++ISG     + +EA  +  +M    ++P+   + S++  C++V NL    
Sbjct: 399 EAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGK 458

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
               Y++R         +  ALVDM A+ G +  A  +F+ +  RD ++Y SMI G  + 
Sbjct: 459 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQ 518

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G G+ A+ LF+ M +  + PD +    VL+ACSH GLV  G   FE M+++Y + P  EH
Sbjct: 519 GEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEH 578

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           +ACM DL GR G L  A E++ +MP +P  + W  L+GAC+++ + E+GE  A +L E++
Sbjct: 579 FACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMK 638

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           P+N G YVL++N+YA A  W  +  VR  M++ G+RK PGC+
Sbjct: 639 PENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCA 680



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 40/218 (18%), Positives = 92/218 (42%), Gaps = 8/218 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    + S L L  +     H  + H ++ ++   +DH L+ + +   ++ +  +  +  
Sbjct: 436 PNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARR 495

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   + +++ GY           +F  +   +  PD  T   V+ ACSH   
Sbjct: 496 VFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGL 555

Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           V +G  +   +   +G+   +     + DL+G+   ++ A+++   MP +   +  A ++
Sbjct: 556 VTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLI 615

Query: 211 GYASVGDLVE-----AKTVFDLMPERSNVSWNALIGGL 243
           G   +    E     A+ + ++ PE  N  +  LI  +
Sbjct: 616 GACRIHRNTEIGEWAAEKLLEMKPE--NPGYYVLIANM 651


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 298/564 (52%), Gaps = 49/564 (8%)

Query: 55  QVHSHIIKK-GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
           +VH H++++  L +D S++   +S    +   +  +  +F  + + +   WN ++ GY+ 
Sbjct: 267 EVHCHVLRRMELVEDVSVINSLMSFYLRIGQ-MEKAEFLFRNMKSRDLVSWNAIIAGYAS 325

Query: 114 NSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-GVDEDV 171
           N  +++   +F   I  E + PD  T   V+ AC+HV +++    IH  +IR  G+ ED 
Sbjct: 326 NGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDT 385

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG--------------- 216
            VG +L+  Y K      A + F  +  ++++SW A++  +   G               
Sbjct: 386 SVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLRE 445

Query: 217 ----DLVEAKTVFDLMPERSNVS-----------------------WNALIGGLVKIGDL 249
               D +   T+       S V                         N ++    K G++
Sbjct: 446 GIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNM 505

Query: 250 RSARQLFDEMPE-RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           + A  +F  + E RNVV+  +MI GY        A ++F    + D+  W+ ++  YA+N
Sbjct: 506 KYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAEN 565

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
             PD+A+ +F ++  + ++PD   ++S++ AC+ + ++ +      Y+ R+  +  R + 
Sbjct: 566 DFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLN- 624

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             A +DM +KCG++  A +LF + P +D+V + +M+ G ++HG G +A+ +F  ML  G+
Sbjct: 625 -GAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGV 683

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD V  T VL ACSH GLV++GW+ F +++ V+   P+ E YAC+VDLL R G +K AY
Sbjct: 684 KPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAY 743

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
             +  MP+E +A+ WG LLGAC+ + ++ELG +VA+ LF++E  N G+YV++SN+YA   
Sbjct: 744 TFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADA 803

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW  V  +R  M+ R L+K  GCS
Sbjct: 804 RWDGVMEIRRLMRTRELKKPAGCS 827



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 229/524 (43%), Gaps = 67/524 (12%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQ-VHSHIIKKGLEQDHSLVAH-FISLCHSLATPL 86
           +N  KP+ +  A+ L    +L+    + VHS++IK GLE  H+L  +  IS+        
Sbjct: 135 VNEAKPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLE-SHTLAGNALISMYAKCGLVC 193

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           S + A FNRI   +   WN ++ G+S+N    E F +F  +++    P+  T   ++  C
Sbjct: 194 SDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVC 253

Query: 147 SHV---LSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           + +      R G  +H  V+ R  + EDV V  SL+  Y +  ++  A  +F  M  R++
Sbjct: 254 ASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDL 313

Query: 203 VSWTAMIVGYASVGDLVEAKTVFD-------LMPERSNVSWNALIGGLVKIGDLRSARQL 255
           VSW A+I GYAS G+ ++A  +F        + P+  +V+  +++     + +L+ A+ +
Sbjct: 314 VSWNAIIAGYASNGEWLKALELFSEFISLETIKPD--SVTLVSVLPACAHVHNLQVAKGI 371

Query: 256 FDEMPERNVVSYTT-----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
              +     +   T     ++  YAK     +A   F     +D+++W+A++  + ++G 
Sbjct: 372 HGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGC 431

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA--HV 368
               V +   M  + ++PD   +++++   + V  +       SY  R  +    A   +
Sbjct: 432 ETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTL 491

Query: 369 IAALVDMNAKCGNM--------------------------------DRAAELFETMPNRD 396
              ++D  AKCGNM                                D A  +F TM   D
Sbjct: 492 GNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETD 551

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE-----DG 451
           + ++  M++  + +    QA+SLF  +  +G+ PD V    +L AC+H+  V       G
Sbjct: 552 LTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHG 611

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
           +       +V             +D+  + G +  AY+L  S P
Sbjct: 612 YVIRACFNDV-------RLNGAFIDMYSKCGSVFGAYKLFLSSP 648



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 16/346 (4%)

Query: 116 RFIEVFTIFVRLIREEA--VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           R  E  ++F+  +R      P+      ++K+C  + ++R G+ +H   ++ G      +
Sbjct: 17  RHDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSL 76

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV-GDLVEAKTVFDLMPERS 232
              L++LY K   +    K+F EM +R+ V W  ++ G A       E   +F  M   +
Sbjct: 77  CKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVN 136

Query: 233 NVSWNALIGGLV--KIGDLR--SARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS-A 283
               N++   +V      LR  + + +   + +  + S+T     +I  YAK G + S A
Sbjct: 137 EAKPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDA 196

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            + F     +DVV+W+A+I+G+++N   +EA K+F  M    +QP+   + S++  C+ +
Sbjct: 197 YAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASL 256

Query: 344 ---GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
                      V  ++ R    +    VI +L+    + G M++A  LF  M +RD+VS+
Sbjct: 257 EENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSW 316

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHV 445
            ++I G + +G   +A+ LF   +S E + PD V    VL AC+HV
Sbjct: 317 NAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHV 362


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 284/529 (53%), Gaps = 17/529 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  +++ G +QD  +    I   +S    +  +  VF+++       W T++ GY++ 
Sbjct: 172 QLHGFVVRSGFDQDVYVGTSLIDF-YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 230

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R      +F ++     VPD+Y    V+ ACS +  +  G  IHA V+R G + DV V 
Sbjct: 231 GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 290

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             LID Y K   +   RK+FD+M  +N++SWT MI GY       EA  +F    E + +
Sbjct: 291 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFG---EMNRL 347

Query: 235 SWN----ALIGGLVKIGD---LRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSA 283
            W     A    L   G    L   RQ+     + N+ S       +ID YAK   +  A
Sbjct: 348 GWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDA 407

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +F+   +++V++++A+I GY+   +  EA+++F +M  +  +P+EF   +L++A S +
Sbjct: 408 KKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNL 467

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            +L       + L +  +D     V  ALVDM AKCG+++ A ++F +   RDVV + SM
Sbjct: 468 ASLRHGQQFHNQLVKMGLDFC-PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSM 526

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I   + HG   +A+ +F  M+ EG+ P+ V F  VL+ACSH G VEDG   F +M   + 
Sbjct: 527 ISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FG 585

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I P  EHYAC+V LLGR+G L  A E +  MP+EP A  W +LL AC++  ++ELG+  A
Sbjct: 586 IKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAA 645

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
                 +P+++GSY+LLSNI+A+   W DV  VR +M    + K PG S
Sbjct: 646 EMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRS 694



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 233/453 (51%), Gaps = 16/453 (3%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           H   +H  II  GL+ D  L    I++C S +  +  +  VF+++ + N   W++++  Y
Sbjct: 67  HYKIIHGQIIVSGLQSDTFLANILINVC-SKSDRVDNARVVFDKMPHKNLITWSSMVSMY 125

Query: 112 SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           SQ     E   +FV L R+    P+++    VI+AC+ +  V +G  +H  V+R G D+D
Sbjct: 126 SQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQD 185

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF----- 225
           V+VGTSLID Y K   I  AR VFD++ E+  V+WT +I GY   G    +  +F     
Sbjct: 186 VYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRE 245

Query: 226 -DLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDM 280
            +++P+R  VS  +++     +  L   +Q+         E +V     +ID Y K   +
Sbjct: 246 TNVVPDRYVVS--SVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 303

Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
            + R LF+    +++++W+ +ISGY QN    EA+K+F +M     +PD F   S++++C
Sbjct: 304 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 363

Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
                L+    V +Y  +++++ S   V   L+DM AK   +  A ++F+ M  ++V+SY
Sbjct: 364 GSREALEQGRQVHAYTIKANLE-SDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISY 422

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI+G S      +A+ LF  M      P+E  F  ++TA S++  +  G +F   +  
Sbjct: 423 NAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 482

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
           +  +   P     +VD+  + G ++ A ++ NS
Sbjct: 483 M-GLDFCPFVTNALVDMYAKCGSIEEARKMFNS 514


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 298/564 (52%), Gaps = 49/564 (8%)

Query: 55  QVHSHIIKK-GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
           +VH H++++  L +D S++   +S    +   +  +  +F  + + +   WN ++ GY+ 
Sbjct: 206 EVHCHVLRRMELVEDVSVINSLMSFYLRIGQ-MEKAEFLFRNMKSRDLVSWNAIIAGYAS 264

Query: 114 NSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-GVDEDV 171
           N  +++   +F   I  E + PD  T   V+ AC+HV +++    IH  +IR  G+ ED 
Sbjct: 265 NGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDT 324

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG--------------- 216
            VG +L+  Y K      A + F  +  ++++SW A++  +   G               
Sbjct: 325 SVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLRE 384

Query: 217 ----DLVEAKTVFDLMPERSNVS-----------------------WNALIGGLVKIGDL 249
               D +   T+       S V                         N ++    K G++
Sbjct: 385 GIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNM 444

Query: 250 RSARQLFDEMPE-RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           + A  +F  + E RNVV+  +MI GY        A ++F    + D+  W+ ++  YA+N
Sbjct: 445 KYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAEN 504

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
             PD+A+ +F ++  + ++PD   ++S++ AC+ + ++ +      Y+ R+  +  R + 
Sbjct: 505 DFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLN- 563

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             A +DM +KCG++  A +LF + P +D+V + +M+ G ++HG G +A+ +F  ML  G+
Sbjct: 564 -GAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGV 622

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            PD V  T VL ACSH GLV++GW+ F +++ V+   P+ E YAC+VDLL R G +K AY
Sbjct: 623 KPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAY 682

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
             +  MP+E +A+ WG LLGAC+ + ++ELG +VA+ LF++E  N G+YV++SN+YA   
Sbjct: 683 TFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADA 742

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW  V  +R  M+ R L+K  GCS
Sbjct: 743 RWDGVMEIRRLMRTRELKKPAGCS 766



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 229/524 (43%), Gaps = 67/524 (12%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQ-VHSHIIKKGLEQDHSLVAH-FISLCHSLATPL 86
           +N  KP+ +  A+ L    +L+    + VHS++IK GLE  H+L  +  IS+        
Sbjct: 74  VNEAKPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLES-HTLAGNALISMYAKCGLVC 132

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           S + A FNRI   +   WN ++ G+S+N    E F +F  +++    P+  T   ++  C
Sbjct: 133 SDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVC 192

Query: 147 SHV---LSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           + +      R G  +H  V+ R  + EDV V  SL+  Y +  ++  A  +F  M  R++
Sbjct: 193 ASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDL 252

Query: 203 VSWTAMIVGYASVGDLVEAKTVFD-------LMPERSNVSWNALIGGLVKIGDLRSARQL 255
           VSW A+I GYAS G+ ++A  +F        + P+  +V+  +++     + +L+ A+ +
Sbjct: 253 VSWNAIIAGYASNGEWLKALELFSEFISLETIKPD--SVTLVSVLPACAHVHNLQVAKGI 310

Query: 256 FDEMPERNVVSYTT-----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
              +     +   T     ++  YAK     +A   F     +D+++W+A++  + ++G 
Sbjct: 311 HGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGC 370

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA--HV 368
               V +   M  + ++PD   +++++   + V  +       SY  R  +    A   +
Sbjct: 371 ETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTL 430

Query: 369 IAALVDMNAKCGNM--------------------------------DRAAELFETMPNRD 396
              ++D  AKCGNM                                D A  +F TM   D
Sbjct: 431 GNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETD 490

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE-----DG 451
           + ++  M++  + +    QA+SLF  +  +G+ PD V    +L AC+H+  V       G
Sbjct: 491 LTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHG 550

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
           +       +V             +D+  + G +  AY+L  S P
Sbjct: 551 YVIRACFNDV-------RLNGAFIDMYSKCGSVFGAYKLFLSSP 587



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 139/284 (48%), Gaps = 14/284 (4%)

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV-GDLVEAKTVFDLMPERSNV 234
            L++LY K   +    K+F EM +R+ V W  ++ G A       E   +F  M   +  
Sbjct: 18  GLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEA 77

Query: 235 SWNALIGGLV--KIGDLR--SARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS-ARS 285
             N++   +V      LR  + + +   + +  + S+T     +I  YAK G + S A +
Sbjct: 78  KPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYA 137

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV-- 343
            F     +DVV+W+A+I+G+++N   +EA K+F  M    +QP+   + S++  C+ +  
Sbjct: 138 AFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEE 197

Query: 344 -GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
                    V  ++ R    +    VI +L+    + G M++A  LF  M +RD+VS+ +
Sbjct: 198 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNA 257

Query: 403 MIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHV 445
           +I G + +G   +A+ LF   +S E + PD V    VL AC+HV
Sbjct: 258 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHV 301


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 292/562 (51%), Gaps = 77/562 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ + AVF  +   +   W  ++ G ++  RF E   +F+ ++ +   P ++T   V+ +
Sbjct: 112 LADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSS 171

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV--- 202
           C+   +   G  +H+ V++ G+   V V  S++++YGK  +   AR VF+ MPER+V   
Sbjct: 172 CAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSW 231

Query: 203 ----------------------------VSWTAMIVGY---------------------- 212
                                       VSW A+I GY                      
Sbjct: 232 NAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTM 291

Query: 213 -------------------ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR 253
                               S+G  V A  +   MP    V+ NALI    K G + +AR
Sbjct: 292 APDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVT-NALISMYAKSGSVENAR 350

Query: 254 QLFDE--MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
            +  +  M + NV+S+T +++GY K+GDM  AR +F+   +RDVVAW+A+I GY QNG  
Sbjct: 351 GVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHN 410

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           DEA+++F  M     +P+ + + +++S C+ +  L+    +     RS  + S + V  +
Sbjct: 411 DEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQS-SSVSNS 469

Query: 372 LVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +V M A+ G++  A  +F+ +  R + V++ SMI  L+ HG G  AV LF+ ML  G+ P
Sbjct: 470 IVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKP 529

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           D + F  VL+AC+HVG V++G R+F+ +Q+ + IVP   HYACMVDLL R G    A E 
Sbjct: 530 DRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEF 589

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  MPVEP A AWG+LL AC+++ + +L EL A +L  ++P N+G+Y  LSN+Y+   RW
Sbjct: 590 IQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRW 649

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
            D   +  + K++ ++K  G S
Sbjct: 650 NDAAKIWKRRKDKSVKKETGFS 671



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 208/480 (43%), Gaps = 115/480 (23%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISC-----ARKVFDE 196
           +++ C    +   G AIHA  ++ G+    ++  +L+  Y             AR++FDE
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 197 MP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
           +P  +RNV +W +++  YA  G L +A+ VF  MPER  VSW  ++ GL ++G    A +
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 255 LFDEMPE--------------------------RNVVSY-------------TTMIDGYA 275
           +F +M                            R V S+              ++++ Y 
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYG 208

Query: 276 KVGDMTSAR-------------------------------SLFEAAPDRDVVAWSALISG 304
           K GD  +AR                               SLFE  PDR +V+W+A+I+G
Sbjct: 209 KCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG 268

Query: 305 YAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           Y QNG   +A+  FS M S   + PDEF + S++SAC+ +G + +   V +Y+ RS M  
Sbjct: 269 YNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPY 328

Query: 364 SRAHVIAALVDMNAKC---------------------------------GNMDRAAELFE 390
               V  AL+ M AK                                  G+M  A E+F+
Sbjct: 329 I-GQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFD 387

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M NRDVV++ +MI G   +GH  +A+ LF  M+  G  P+      VL+ C+ +  +E 
Sbjct: 388 VMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEY 447

Query: 451 GWRFF-EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           G +   +A++++     S  +   +V +  R+G L  A  + + +        W +++ A
Sbjct: 448 GKQIHCKAIRSLQEQSSSVSN--SIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVA 505


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/489 (34%), Positives = 278/489 (56%), Gaps = 10/489 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF  ++  +   WNTLL G  QN  + +    F  +      PD+ +   +I A     +
Sbjct: 308 VFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSAN 367

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA  I+ G+D ++ +G SLID+YGK   +      F+ MPE++++SWT +I G
Sbjct: 368 LLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAG 427

Query: 212 YASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------N 263
           YA     ++A  +   +  E+ +V    +IG ++       + +L  E+          +
Sbjct: 428 YAQNECHLDALNLLRKVQLEKMDVD-PMMIGSILLACSGLKSEKLIKEIHGYVLKGGLAD 486

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           ++    +++ Y ++  +  AR +FE+   +D+V+W+++I+    NG   EA+++F+ +  
Sbjct: 487 ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIE 546

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
            N++PD   LVS++ A + + +L     +  +L R    L    +  +LVDM A+CG M+
Sbjct: 547 TNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFL-EGLIANSLVDMYARCGTME 605

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F  +  RD++ + SMI    +HG G+ A+ LF +M  E + PD + F  +L ACS
Sbjct: 606 NARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACS 665

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV +G + FE M+N Y + P PEHYAC+VDLL R+  L+ AY  + +MP+EP A  W
Sbjct: 666 HSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVW 725

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLGAC+++S+ +LGE+ A +L +L  +N+G+YVL+SN +A   RW DV  VRS MK  
Sbjct: 726 CALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGN 785

Query: 564 GLRKIPGCS 572
            L+K PGCS
Sbjct: 786 KLKKKPGCS 794



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 197/439 (44%), Gaps = 26/439 (5%)

Query: 20  LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLV----AHF 75
           LP  +R     FP       AL L    K      Q+H+H +K     D   +     H 
Sbjct: 37  LPTTTR-----FPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHM 91

Query: 76  ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
              C S       +  VF+++     F WN ++       R++E   ++  +       D
Sbjct: 92  YGKCGSFYD----AVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLD 147

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
            +TFP V+KAC      R G  IH   ++ G    VFV  +LI +Y K  ++  AR +FD
Sbjct: 148 AFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFD 207

Query: 196 E--MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSNV-----SWNALIG-GLV 244
              M + + VSW ++I  +   G+ +EA ++F  M E    SN      +  A  G   +
Sbjct: 208 SGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFI 267

Query: 245 KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           KIG    A  L         VS   +I  YA  G M  A  +F++   +D V+W+ L+SG
Sbjct: 268 KIGRGIHAVILKSNHFTDVYVS-NALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSG 326

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
             QN    +A+  F DM     +PD+  ++++++A  +  NL     V +Y  +  +D S
Sbjct: 327 MVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGID-S 385

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
             H+  +L+DM  KC  +      FE MP +D++S+ ++I G + +     A++L  ++ 
Sbjct: 386 NMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQ 445

Query: 425 SEGLTPDEVAFTIVLTACS 443
            E +  D +    +L ACS
Sbjct: 446 LEKMDVDPMMIGSILLACS 464



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 189/408 (46%), Gaps = 33/408 (8%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN+++  +      +E  ++F R+       + YTF   ++AC     ++ G  IHA ++
Sbjct: 219 WNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVIL 278

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           +     DV+V  +LI +Y    ++  A +VF  M  ++ VSW  ++ G        +A  
Sbjct: 279 KSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAIN 338

Query: 224 VFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDGYA 275
            F  M +       VS   +I    +  +L +  ++     +  + S      ++ID Y 
Sbjct: 339 HFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYG 398

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K   +    S FE  P++D+++W+ +I+GYAQN    +A+ +   +  + +  D  ++ S
Sbjct: 399 KCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGS 458

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++ ACS + +  L   +  Y+ +    L+   +  A+V++  +   +D A  +FE++ ++
Sbjct: 459 ILLACSGLKSEKLIKEIHGYVLKG--GLADILIQNAIVNVYGELALVDYARHVFESINSK 516

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------H 444
           D+VS+ SMI     +G   +A+ LF+ ++   + PD +    VL A +           H
Sbjct: 517 DIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIH 576

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
             L+  G+ F E +     I  S      +VD+  R G +++A  + N
Sbjct: 577 GFLIRKGF-FLEGL-----IANS------LVDMYARCGTMENARNIFN 612



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 158/329 (48%), Gaps = 20/329 (6%)

Query: 131 EAVPDKYTFPL------VIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGK 183
           + +P    FPL       ++ C+   ++ +G  +HA  ++     + VF+ T  + +YGK
Sbjct: 35  DPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGK 94

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNAL-IGG 242
                 A KVFD+M ER + +W AMI    S G  VEA  ++  M     VS +A     
Sbjct: 95  CGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEM-RVLGVSLDAFTFPC 153

Query: 243 LVKIGDLRSARQLFDEMPERNV-VSY-------TTMIDGYAKVGDMTSARSLFEAA--PD 292
           ++K       R+L  E+    V   Y         +I  YAK GD+  AR LF++     
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEK 213

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
            D V+W+++IS +   G+  EA+ +F  M    V+ + +  VS + AC     + +   +
Sbjct: 214 DDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI 273

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
            + + +S+   +  +V  AL+ M A CG M+ A  +F++M  +D VS+ +++ G+  +  
Sbjct: 274 HAVILKSN-HFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDM 332

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
              A++ F  M   G  PD+V+   ++ A
Sbjct: 333 YSDAINHFQDMQDSGQKPDQVSVLNMIAA 361


>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 317/575 (55%), Gaps = 28/575 (4%)

Query: 17  SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL-VAHF 75
           S  LPN +  A    P  S  +S L    +C   + + Q+H+H+    L  D  +   HF
Sbjct: 11  SRALPNVTSPAMPGVPPFSSAVSKLH--SRCHSLSTIQQLHAHL----LHHDRPIPYNHF 64

Query: 76  ISLCHSLATPLSYSTAVFNRI-------VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI 128
           +S   S+++  S STA  + +         P  F +N  L+ ++  SR      + +R++
Sbjct: 65  LSKLLSISSSSSPSTAAADYVHLLLTAHPTPTAFSFNVALRFFAA-SRPRTTLQLSLRML 123

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           R    PD YT P ++ A +   +     + HA + + G+        SL+ +Y       
Sbjct: 124 RAALRPDAYTLPFLLLAAARCPAPAFAASAHALLQKLGLHNHDHTVHSLVTMYSNLGRPR 183

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-- 246
            AR+VFD +  R+VVSW +MI  Y + G   +A  +F  M     V  NA+   +V    
Sbjct: 184 AARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAAC 243

Query: 247 ---GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
              GDL   R L + +     E   +  + ++  Y K G+M  AR +F+A   +D VAW+
Sbjct: 244 RDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWN 303

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-LSR 358
           ALI+GYAQNG   EA+ +F  M     +PD+  LV ++SAC+ VG L+L   +D Y L R
Sbjct: 304 ALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYALQR 363

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
                S  +V  ALVDM +KCG++ RA ++FE +P ++  S+ ++I GL+ +G G++A+ 
Sbjct: 364 GFY--SNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIR 421

Query: 419 LFDRML-SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            F+ M   EGL PD++ F  VL+AC H GL++DG R+F+++ + + I+P  EHY+CMVDL
Sbjct: 422 QFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVDL 481

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           L R GHL+ A++ +  +P +P A   GALL AC+   ++E+   V N++  LEP N+ +Y
Sbjct: 482 LARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLEPSNSWNY 541

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           V+ S IYA++DR  D   +R  M+ERG+ KIPGCS
Sbjct: 542 VVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCS 576


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 291/539 (53%), Gaps = 8/539 (1%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI-VNP 99
           L  I++C       Q+H+ +++  L  +  +V    +      T + Y      +   + 
Sbjct: 88  LDFIQRCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWSF 147

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           ++F  N ++ GY   +       I+  ++    VPD YT P V+K+C+    + E   IH
Sbjct: 148 SSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIH 207

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
              ++  +  D+FV  S + +Y    +   A KVFD MP R+VVSWT +I GY   G   
Sbjct: 208 TLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFN 267

Query: 220 EAKTVFDLMPERSNV-SWNALIGGLVKIGDL---RSARQLFDEMPE-RNVVSYTTMIDGY 274
           +A  +F  M    N  ++ +++G   K+G L   +    L  + P  + +V   T++D Y
Sbjct: 268 DAVALFLRMDVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMY 327

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K   +T A+ LF+  P++D+V+W+++ISG  Q   P E++ +F +M     +PD  IL 
Sbjct: 328 VKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILT 387

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S++SAC+ +G LD   WV  Y+  S +     H+  +L+DM AKCG ++ A ++F  +P+
Sbjct: 388 SVLSACASLGLLDYGRWVHEYIDHSRIKWD-VHIGTSLIDMYAKCGCIEMAQQMFNLLPS 446

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           +++ ++ + I GL+I+GHG++A+  F  ++  G  P+E+ F  V +AC H GLV++G  +
Sbjct: 447 KNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSY 506

Query: 455 FEAMQNV-YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           F+ M +  Y + P  EHY CMVDLL R   ++ A EL+N MP+ P     GALL A   Y
Sbjct: 507 FKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTY 566

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++EL   +   +   E Q +G YVLLSN YA   +W +V  VR  MKE+G+ K PG S
Sbjct: 567 GNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSS 625


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 298/529 (56%), Gaps = 13/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           QVH   IK G  +D S+    + + +     +     VF+ +   N   W +LL GY QN
Sbjct: 113 QVHCQCIKCGFVEDVSVGTSLVDM-YMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   +F ++  E   P+ +TF  V+   +   +V +G  +H  VI+ G+D  +FVG
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            S++++Y K   +S A+ VFD M  RN VSW +MI G+ + G  +EA  +F  M      
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 235 SWNALIGGLVK----IGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSARSL 286
               +   ++K    I ++  A+QL  ++     + ++   T ++  Y+K  ++  A  L
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 287 FEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQ-V 343
           F      ++VV+W+A+ISGY QNG+ D A+ +F  M   + V+P+EF   S+++AC+   
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPT 411

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            +++      S   +S    +   V +ALV M AK GN++ A E+F+   +RD+VS+ SM
Sbjct: 412 ASVEQGKQFHSCSIKSGFSNALC-VSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSM 470

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + HG G++++ +F+ M S+ L  D + F  V++AC+H GLV +G R+F+ M   Y 
Sbjct: 471 ISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYH 530

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           IVP+ EHY+CMVDL  R G L+ A +L+N MP    A+ W  LL AC+++ +++LGEL A
Sbjct: 531 IVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAA 590

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L  L+PQ++ +YVLLSNIYATA  W +   VR  M  + ++K  G S
Sbjct: 591 EKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYS 639



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 216/418 (51%), Gaps = 22/418 (5%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           N LL  +S+N +  E   +F+ L R  +  D  +   V+K C  +     G  +H   I+
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G  EDV VGTSL+D+Y K + +    +VFDEM  +NVVSWT+++ GY   G   +A  +
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 225 FDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDGYAK 276
           F  M     + +  ++ A++GGL   G +    Q+   + +  + S      +M++ Y+K
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSK 240

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
              ++ A+++F++  +R+ V+W+++I+G+  NG   EA ++F  M  + V+  + I  ++
Sbjct: 241 SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-R 395
           +  C+ +  +  +  +   + ++  D    ++  AL+   +KC  +D A +LF  M   +
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFD-LNIKTALMVAYSKCSEIDDAFKLFCMMHGVQ 359

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRM-LSEGLTPDEVAFTIVLTACSH-VGLVEDGWR 453
           +VVS+ ++I G   +G   +A++LF +M   EG+ P+E  F+ VL AC+     VE G +
Sbjct: 360 NVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQ 419

Query: 454 FFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           F        +I     +  C    +V +  + G+++SA E+     V+    +W +++
Sbjct: 420 FHSC-----SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMI 471


>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 276/467 (59%), Gaps = 11/467 (2%)

Query: 21  PNCSRSAPINFPKPSCLLSALTLIKKCKLQ----THLHQVHSHIIKKGLEQDHSLVA--H 74
           P  ++  P   PK   L     L++K +L        +Q+H+ +I  GL Q H L A  +
Sbjct: 34  PKPTQITPTLDPKVLVLDLNHQLLQKLELSCINIKQFNQIHTQLIVLGLFQ-HPLAAGRY 92

Query: 75  FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS--QNSRFIEVFTIFVRLIREEA 132
              LC++    LS+   +++ I  P+ F+ NT+++ +    N  F  +   + ++I +  
Sbjct: 93  IKKLCNTYFNLLSHCVYLYDYIEQPDAFICNTIIRCFVSLNNDPFGALRFYYDKMIAKWV 152

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           +P++YTFPL++K C+ + S++EG   HA V+++G + D +V  SL+ +Y     +  AR 
Sbjct: 153 LPNRYTFPLLVKVCADIGSLKEGQKAHACVVKFGFEFDAYVRNSLLHMYSACGRVLDARL 212

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           +F+     ++VSW +MI+GY   GD+  A+ +FD MPER   SWN++I G V  GD+ +A
Sbjct: 213 LFESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMPERDAFSWNSMISGYVGAGDVEAA 272

Query: 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           ++LFD MP R+VVS+  MIDGYAK+ +++ AR LF   P R++V+W+ +++ Y +     
Sbjct: 273 KKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYG 332

Query: 313 EAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           E +K+F  M   + ++P++  L+S+++AC+    LDL  W+ SY+  + ++ S   +  A
Sbjct: 333 ECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVE-SDELLSTA 391

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+ M AKCG MD A  +F  MP++ VVS+ SMI G +I+GH  +A+  F  M    + P+
Sbjct: 392 LLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPN 451

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
              F  VL+ACSH  L+ +GW +F+ MQ  Y I P  EH  CMVDLL
Sbjct: 452 AATFVSVLSACSHAELLLEGWWYFDLMQRKYKIEPKVEHCGCMVDLL 498


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 304/548 (55%), Gaps = 16/548 (2%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S  L + + ++K +L   +H      +KK ++ D  + +  I L +S    ++ +  VF 
Sbjct: 109 SIALKSCSGLQKLELGKMIHG----FLKKKIDSDMFVGSALIEL-YSKCGQMNDAVKVFT 163

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVR 153
               P+  LW +++ GY QN         F R++  E+  PD  T      AC+ +    
Sbjct: 164 EYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFN 223

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
            G ++H  V R G D  + +  S+++LYGK   I  A  +F EMP ++++SW++M+  YA
Sbjct: 224 LGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYA 283

Query: 214 SVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVV 265
             G    A  +F+ M ++    + V+  + +       +L   +Q+     +   E ++ 
Sbjct: 284 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDIT 343

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             T ++D Y K     +A  LF   P +DVV+W+ L SGYA+ G   +++ +F +M S  
Sbjct: 344 VSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNG 403

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
            +PD   LV +++A S++G +  +  + +++++S  D +   + A+L+++ AKC ++D A
Sbjct: 404 TRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFD-NNEFIGASLIELYAKCSSIDNA 462

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSH 444
            ++F+ + + DVV++ S+I     HG G +A+ L  +M +   + P++V F  +L+ACSH
Sbjct: 463 NKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSH 522

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GL+E+G + F  M N Y ++P+ EHY  MVDLLGR G L  A +++N+MP++     WG
Sbjct: 523 AGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWG 582

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALLGAC+++ +I++GEL A  LF L+P +AG Y LLSNIY     W D   +R+ +KE  
Sbjct: 583 ALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENR 642

Query: 565 LRKIPGCS 572
           L+KI G S
Sbjct: 643 LKKIVGQS 650



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 215/423 (50%), Gaps = 15/423 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           + L++ C  +  + Q+HS  +K GL  D S V   +++ ++    L ++  +F       
Sbjct: 8   VKLLETCCSKISITQLHSQCLKVGLALD-SFVVTKLNVLYARYASLCHAHKLFEETPCKT 66

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIRE---EAVPDKYTFPLVIKACSHVLSVREGTA 157
            +LWN LL+ Y    +++E  ++F ++  +   E  PD YT  + +K+CS +  +  G  
Sbjct: 67  VYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKM 126

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH   ++  +D D+FVG++LI+LY K  +++ A KVF E P+ +VV WT++I GY   G 
Sbjct: 127 IH-GFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGS 185

Query: 218 LVEAKTVFDLMPERSNVSWNALI-----GGLVKIGDLRSARQLFDEMPERNVVSY----T 268
              A   F  M     VS + +          ++ D    R +   +  R   +      
Sbjct: 186 PELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLAN 245

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ++++ Y K G +  A +LF   P +D+++WS++++ YA NG    A+ +F++M  K ++ 
Sbjct: 246 SILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIEL 305

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           +   ++S + AC+   NL+    +         +L    V  AL+DM  KC + + A EL
Sbjct: 306 NRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDIT-VSTALMDMYLKCFSPENAIEL 364

Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
           F  MP +DVVS+  +  G +  G   +++ +F  MLS G  PD +A   +L A S +G+V
Sbjct: 365 FNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIV 424

Query: 449 EDG 451
           +  
Sbjct: 425 QQA 427



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++ C   +S+   T +H+  ++ G+  D FV T L  LY +   +  A K+F+E P + 
Sbjct: 10  LLETCCSKISI---TQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKT 66

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLM---------PERSNVSWNAL--IGGLVKIGDLR 250
           V  W A++  Y   G  VE  ++F  M         P+   VS  AL    GL K+   +
Sbjct: 67  VYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSI-ALKSCSGLQKLELGK 125

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                  +  + ++   + +I+ Y+K G M  A  +F   P  DVV W+++I+GY QNG 
Sbjct: 126 MIHGFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGS 185

Query: 311 PDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
           P+ A+  FS M   + V PD   LVS  SAC+Q+ + +L   V  ++ R   D ++  + 
Sbjct: 186 PELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD-TKLCLA 244

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            +++++  K G++  AA LF  MP +D++S+ SM+   + +G    A++LF+ M+ + + 
Sbjct: 245 NSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIE 304

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
            + V     L AC+    +E+G +  +   N Y           ++D+  +    ++A E
Sbjct: 305 LNRVTVISALRACASSSNLEEGKQIHKLAVN-YGFELDITVSTALMDMYLKCFSPENAIE 363

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELG 519
           L N MP +    +W  L      Y++I + 
Sbjct: 364 LFNRMP-KKDVVSWAVLFSG---YAEIGMA 389


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 296/531 (55%), Gaps = 21/531 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           Q+H +++++G + D S+V   I     CH + T       +FNR+V+ +   W T++ G 
Sbjct: 276 QIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKT----GRKLFNRLVDKDVVSWTTMIAGC 331

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
            QNS   +   +FV ++R+   PD +    V+ +C  + ++++G  +HA  I+  +D D 
Sbjct: 332 MQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDD 391

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           FV   LID+Y K   ++ ARKVFD +   NVVS+ AMI GY+    LVEA  +F  M  R
Sbjct: 392 FVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREM--R 449

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV----------SYTTMIDGYAKVGDMT 281
            ++S   L+  +  +G   S   L        ++          + + +ID Y+K   + 
Sbjct: 450 LSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVG 509

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            AR +FE   DRD+V W+A+ SGY+Q  + +E++K++ D+    ++P+EF   ++++A S
Sbjct: 510 DARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAAS 569

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            + +L       + + +  +D     V  +LVDM AKCG+++ + + F +   RD+  + 
Sbjct: 570 NIASLRHGQQFHNQVIKMGLD-DDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWN 628

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SMI   + HG   +A+ +F+RM+ EG+ P+ V F  +L+ACSH GL++ G+  FE+M   
Sbjct: 629 SMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSK- 687

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           + I P  +HYACMV LLGR G +  A E +  MP++P A  W +LL AC++   +ELG  
Sbjct: 688 FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTY 747

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            A      +P ++GSY+LLSNI+A+   W  V +VR KM    + K PG S
Sbjct: 748 AAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWS 798



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 203/387 (52%), Gaps = 15/387 (3%)

Query: 49  LQTHLHQ-VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
           L +H ++ +H+HI+  G  Q    + + +   +S     S +  +F+ + + N   W+++
Sbjct: 65  LTSHYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSM 124

Query: 108 LKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
           +  Y+Q+   +E   +F R +R     P++Y    V++AC+ + ++ +   +H  V++ G
Sbjct: 125 VSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGG 184

Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF- 225
             +DV+VGTSLID Y KR  +  AR +FD +  +  V+WTA+I GYA +G    +  +F 
Sbjct: 185 FVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFN 244

Query: 226 -----DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAK 276
                D+ P+R  +S  +++     +  L   +Q+   +  R    +V     +ID Y K
Sbjct: 245 QMREGDVYPDRYVIS--SVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLK 302

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
              + + R LF    D+DVV+W+ +I+G  QN    +A+ +F +M  K  +PD F   S+
Sbjct: 303 CHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSV 362

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           +++C  +  L     V +Y  + ++D +   V   L+DM AKC ++  A ++F+ +   +
Sbjct: 363 LNSCGSLQALQKGRQVHAYAIKVNID-NDDFVKNGLIDMYAKCDSLTNARKVFDLVAAIN 421

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           VVSY +MI+G S      +A+ LF  M
Sbjct: 422 VVSYNAMIEGYSRQDKLVEALDLFREM 448



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 221/472 (46%), Gaps = 18/472 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  ++K G  QD  +    I   ++    +  +  +F+ +    T  W  ++ GY++ 
Sbjct: 175 QLHGFVVKGGFVQDVYVGTSLIDF-YAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKL 233

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R      +F ++   +  PD+Y    V+ ACS +  +  G  IH  V+R G D DV V 
Sbjct: 234 GRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVV 293

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
             +ID Y K  ++   RK+F+ + +++VVSWT MI G        +A    DL  E    
Sbjct: 294 NGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDA---MDLFVEMVRK 350

Query: 235 SW-------NALIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSA 283
            W        +++     +  L+  RQ+     + N+         +ID YAK   +T+A
Sbjct: 351 GWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNA 410

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           R +F+     +VV+++A+I GY++  +  EA+ +F +M      P     VSL+   S +
Sbjct: 411 RKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSL 470

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             L+LS+ +   + +  + L  +   +AL+D+ +KC  +  A  +FE + +RD+V + +M
Sbjct: 471 FLLELSSQIHCLIIKFGVSLD-SFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAM 529

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
             G S      +++ L+  +    L P+E  F  V+ A S++  +  G +F   +  +  
Sbjct: 530 FSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKM-G 588

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           +   P     +VD+  + G ++ +++  +S   +   + W +++     + D
Sbjct: 589 LDDDPFVTNSLVDMYAKCGSIEESHKAFSSTN-QRDIACWNSMISTYAQHGD 639



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 76/159 (47%), Gaps = 2/159 (1%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           H  Q H+ +IK GL+ D  +    + + ++    +  S   F+     +   WN+++  Y
Sbjct: 576 HGQQFHNQVIKMGLDDDPFVTNSLVDM-YAKCGSIEESHKAFSSTNQRDIACWNSMISTY 634

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           +Q+    +   +F R+I E   P+  TF  ++ ACSH   +  G     ++ ++G++  +
Sbjct: 635 AQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGI 694

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
                ++ L G+  +I  A++   +MP +   V W +++
Sbjct: 695 DHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLL 733


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 264/456 (57%), Gaps = 41/456 (8%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA +IR G  +D F+   L+    K   I  A ++F      NV  +TA+I G+ S G+
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKI------------------------------- 246
            +EA  ++  M   S +  N L+  ++K                                
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187

Query: 247 --------GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                   G+L  AR++F+EMPE +VV+ T MI  Y+  G +  A ++F     +D V W
Sbjct: 188 IMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+I G+ +N + + A++ F  M  +NV+P+EF +V ++SACSQ+G L++  WV SY+ +
Sbjct: 247 TAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             ++L+   V  AL++M ++CG++D A  +F+ M +RDV++Y +MI GLS++G  RQA+ 
Sbjct: 307 FEIELN-LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF  M+   L P  V F  VL ACSH GLV+ G+  F +M   Y + P  EHY CMVDLL
Sbjct: 366 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLL 425

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR G L+ AY+L+ +M + P     G LL ACK++ ++ELGE VA  L +    ++G+YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYV 485

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LLS++YA++ +W +   VR+KMKE G++K PGCSS+
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 211/441 (47%), Gaps = 55/441 (12%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQV---HSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           PK    L    +I   +   H++QV   H+ +I+ G  QD  +V   +  C S    + Y
Sbjct: 41  PKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHAIDY 99

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           ++ +F    NPN +L+  L+ G+  +  ++E   ++ R++ E  +PD Y    ++KAC  
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGS 159

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
            L++REG  +H+  ++ G   +  V   +++LYGK  E+  AR+VF+EMPE +VV+ T M
Sbjct: 160 QLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVM 218

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--- 265
           I  Y+  G + EA  VF  +  +  V W A+I G V+  +   A + F  M   NV    
Sbjct: 219 ISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNE 278

Query: 266 -----------------------SY-------------TTMIDGYAKVGDMTSARSLFEA 289
                                  SY               +I+ Y++ G +  A+++F+ 
Sbjct: 279 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 338

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
             DRDV+ ++ +ISG + NG+  +A+++F  M  + ++P     V +++ACS  G +D  
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNR----DVVSYCS 402
             +   ++R +    +      +VD+  + G ++ A +L  TM   P+      ++S C 
Sbjct: 399 FEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 458

Query: 403 MIKGLSIHGHGRQ-AVSLFDR 422
           M K L +   G Q A  L DR
Sbjct: 459 MHKNLEL---GEQVAKELEDR 476


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 292/554 (52%), Gaps = 51/554 (9%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFIS-LCHSLATPLSYSTAVFNR 95
           LLS L  +   K    + Q    I K GL     +++  IS L  S    L Y+ A+F  
Sbjct: 115 LLSKLQQLSSVK---EVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFED 171

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
               N F+ NT+++ Y+++   I+   ++  + R++   D +T+P  +KAC+ VL   EG
Sbjct: 172 TAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEG 231

Query: 156 -------------TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
                          IH  + R G+D+D F+  SL+ LY                     
Sbjct: 232 DIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLY--------------------- 270

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
                     +  G L  A+ VFD M E++  SWN +I    +I D  SA  L   MP +
Sbjct: 271 ----------SQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGSMPGK 320

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           NVVS+  +I  Y ++G +  A+ +F+  P+RD V+W+++I+GY Q      A+ +F +M 
Sbjct: 321 NVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREME 380

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
             NV+  +  L+S++ AC++ G L++   +   L +    +   ++  ALVDM AKCG++
Sbjct: 381 IANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIE-GYLSNALVDMYAKCGHL 439

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD--RMLSEGLTPDEVAFTIVLT 440
           + A E+F  +  + +  + +MI  L++HG+  +A+ LF    M  +G  P+ V F  VL 
Sbjct: 440 NLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLI 499

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH GLV++G  FF  M N Y I+P  +HY CMVDLL R G LK A+ ++ +MP E ++
Sbjct: 500 ACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANS 559

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
             W  LLGAC+++  ++L E    +L ++EP   G YVLLSNIYA A RW DV  VRS+M
Sbjct: 560 VLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEM 619

Query: 561 KERGLRKIPGCSSL 574
              G+ K PG S +
Sbjct: 620 IGSGVPKKPGSSHI 633


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 168/491 (34%), Positives = 284/491 (57%), Gaps = 8/491 (1%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VFN I   N   W +++ GY +N    E   +F R+     + ++YT+  +I AC+ + +
Sbjct: 198 VFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSA 257

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +G   H  +++ G++    + TSL+D+Y K  +IS AR+VF+E    ++V WTAMIVG
Sbjct: 258 LHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVG 317

Query: 212 YASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDL---RSARQLFDEMPERNV 264
           Y   G + EA ++F  M     + + V+  +++ G   I +L   RS   L  ++   + 
Sbjct: 318 YTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDT 377

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                ++  YAK      A+ +FE   ++D+VAW+++ISG++QNG   EA+ +F  M S+
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           +V P+   + SL SAC+ +G+L + + + +Y +    +  S  HV  AL+D  AKCG+  
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQ 497

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F+T+  ++ +++ +MI G    G    ++ LF+ ML +   P+E  FT +L+AC 
Sbjct: 498 SARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACG 557

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H G+V +G ++F +M   Y   PS +HY CMVD+L R G L+ A +++  MP++P    +
Sbjct: 558 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
           GA L  C ++S  +LGE+V  ++ +L P +A  YVL+SN+YA+  RW     VR+ MK+R
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677

Query: 564 GLRKIPGCSSL 574
           GL KI G S++
Sbjct: 678 GLSKIAGHSTM 688



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+ KC     L Q H  +   GL  D S+    +SL +        +  VF++I  P+ +
Sbjct: 50  LLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSL-YGFFGYTKDARLVFDQIPEPDFY 108

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LW  +L+ Y  N   +EV  ++  L++     D   F   +KAC+ +  +  G  IH  +
Sbjct: 109 LWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQL 168

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           ++    ++V V T L+D+Y K  EI  A KVF+++  RNVV WT+MI GY       E  
Sbjct: 169 VKVPSFDNV-VLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGL 227

Query: 223 TVFDLMPER----SNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGY 274
            +F+ M E     +  ++  LI    K+  L   +     L     E +    T+++D Y
Sbjct: 228 VLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMY 287

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            K GD+++AR +F      D+V W+A+I GY  NG  +EA+ +F  M    ++P+   + 
Sbjct: 288 VKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIA 347

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S++S C  + NL+L   V     +  + +   +V  ALV M AKC     A  +FE    
Sbjct: 348 SVLSGCGLIENLELGRSVHGLSIK--VGIWDTNVANALVHMYAKCYQNRDAKYVFEMESE 405

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           +D+V++ S+I G S +G   +A+ LF RM SE +TP+ V    + +AC+ +G +  G   
Sbjct: 406 KDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSL 465

Query: 455 FEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                 +  +  S  H    ++D   + G  +SA  + +++  E +   W A++G 
Sbjct: 466 HAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIE-EKNTITWSAMIGG 520



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 170/317 (53%), Gaps = 14/317 (4%)

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
           L++  C+++ S+R+    H  +   G+  D+ + T L+ LYG       AR VFD++PE 
Sbjct: 49  LLLSKCTNIDSLRQS---HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLF 256
           +   W  M+  Y    + VE   ++DL+ +      ++ ++  +    ++ DL + +++ 
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165

Query: 257 DEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            ++   P  + V  T ++D YAK G++ SA  +F     R+VV W+++I+GY +N   +E
Sbjct: 166 CQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEE 225

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
            + +F+ M   NV  +E+   +L+ AC+++  L    W    L +S ++LS   ++ +L+
Sbjct: 226 GLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSC-LVTSLL 284

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           DM  KCG++  A  +F    + D+V + +MI G + +G   +A+SLF +M    + P+ V
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344

Query: 434 AFTIVLTACSHVGLVED 450
               VL+ C   GL+E+
Sbjct: 345 TIASVLSGC---GLIEN 358


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 174/464 (37%), Positives = 283/464 (60%), Gaps = 15/464 (3%)

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184
           ++++ +E  P ++T+ L+I +C+   S+ +G  +H  +I  G D+D F+ T LI++Y + 
Sbjct: 67  LQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSEL 126

Query: 185 KEISCARKVFDEMPERNVVSWTAM-----IVGYA-SVGDLVEAKTVFDLMPERSNVSW-- 236
             I  ARKVFD+  +R +  W A+     + GY   V DL        +  +R   ++  
Sbjct: 127 DSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVL 186

Query: 237 NALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
            A +     +  L + R++   +     E +V   TT++D YA+ G + +A  +F+  P 
Sbjct: 187 KACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPV 246

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSN 350
           ++VV+WSA+I+ Y++NG+P EA+++F  M  +N  + P+   +VS++ AC+ +  L+   
Sbjct: 247 KNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGK 306

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
            +  Y+ R  +D S   V++ALV + A+CGN++    +FE M  RDVVS+ S+I    IH
Sbjct: 307 LMHGYILRRGLD-SILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIH 365

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G GR+A+ +F  M+ +GL+P  ++F  VL ACSH GLVE+G   FE+M   + I PS EH
Sbjct: 366 GFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEH 425

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           YACMVDLLGR   L  A ++++ M +EP    WG+LLG+C+++ ++EL E   +RLFELE
Sbjct: 426 YACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELE 485

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           P NAG+YVLL++IYA A  W +V  V+  ++ RGL+K+PG S +
Sbjct: 486 PTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCI 529



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 183/369 (49%), Gaps = 22/369 (5%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LI  C  Q  L Q   +H H+I  G +QD  L    I++   L + +  +  VF++    
Sbjct: 84  LILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDS-IDNARKVFDKTRKR 142

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC----SHVLSVREG 155
             ++WN L +  +      EV  ++ R+ R     D++T+  V+KAC    + V  +  G
Sbjct: 143 TIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNG 202

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IH  ++R G +  V + T+L+D+Y +   +  A +VFD+MP +NVVSW+AMI  Y+  
Sbjct: 203 REIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKN 262

Query: 216 GDLVEAKTVF--------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
           G  +EA  +F        DL+P  ++V+  +++     +  L   + +   +  R + S 
Sbjct: 263 GKPLEALELFRKMMLENQDLLP--NSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSI 320

Query: 267 ---YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
               + ++  YA+ G++     +FE    RDVV+W++LIS Y  +G   +A++IF +M  
Sbjct: 321 LPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMID 380

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + + P     VS++ ACS  G ++    +   + R H         A +VD+  +   +D
Sbjct: 381 QGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLD 440

Query: 384 RAAELFETM 392
            AA++ + M
Sbjct: 441 EAAKIIDDM 449


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 303/556 (54%), Gaps = 23/556 (4%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           NF   +C LS       C     L    Q+HS  +K GLE + ++    +++ ++    L
Sbjct: 241 NFATLACFLSV------CATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAM-YAKCQCL 293

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
             +  +F  +   +   WN ++ G  QN  F+E F +F  + R  A PD  T   ++ A 
Sbjct: 294 DDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPAL 353

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           + +  +++G  +H  ++R  V+ DVF+ ++L+D+Y K +++  A+ ++D     +VV  +
Sbjct: 354 TDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGS 413

Query: 207 AMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL----FDE 258
            MI GY   G   EA  +F  + E+    + V+  +++ G   +  L   +Q+       
Sbjct: 414 TMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRN 473

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
             ER     + ++D YAK G +  +  +F     +D V W+++IS ++QNG+P EA+ +F
Sbjct: 474 AYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLF 533

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMN 376
             MC + ++ +   + + +SAC+ +  +     +     +  +   +A + A  AL+DM 
Sbjct: 534 RQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPI---KADIFAESALIDMY 590

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AKCGN++ A  +FE MP+++ VS+ S+I     HG  +++VSL   M  EG  PD V F 
Sbjct: 591 AKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFL 650

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            +++AC+H GLVE+G + F+ M   Y I P  EH+ACMVDL  R+G L  A + +  MP 
Sbjct: 651 ALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPF 710

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           +P A  WGALL AC+++ ++EL ++ +  LF+L+P N+G YVL+SNI A A RW  V  V
Sbjct: 711 KPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKV 770

Query: 557 RSKMKERGLRKIPGCS 572
           R  MK+  + KIPG S
Sbjct: 771 RRLMKDNKILKIPGYS 786



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 220/473 (46%), Gaps = 22/473 (4%)

Query: 41  LTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLC--HSLATPLSYSTAVFN- 94
           L +++ C    HL    Q+H+  +  G   DH+ +A    L   + LA     + AVF+ 
Sbjct: 36  LAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSA 95

Query: 95  --RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP--DKYTFPLVIKACSHVL 150
             R    ++  WN L++G++   +       +V++    A P  D +T P V+K+C+ + 
Sbjct: 96  LPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALG 155

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++  G  +H      G+  DV+VG++L+ +Y     +  AR  FD +PER+ V W  M+ 
Sbjct: 156 AMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMD 215

Query: 211 GYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ER 262
           G    GD+  A  +F  M     E +  +    +       DL S  QL         E 
Sbjct: 216 GCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEP 275

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
            V    T++  YAK   +  A  LFE  P  D+V W+ +ISG  QNG   EA  +F DM 
Sbjct: 276 EVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ 335

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
               +PD   LVSL+ A + +  L     V  Y+ R+ +++    +++ALVD+  KC ++
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMD-VFLVSALVDIYFKCRDV 394

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
             A  L++     DVV   +MI G  ++G   +A+ +F  +L + + P+ V    VL  C
Sbjct: 395 RMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGC 454

Query: 443 SHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           + +  +  G +     ++N Y      E  + ++D+  + G L  ++ +   M
Sbjct: 455 ASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKM 505


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 171/540 (31%), Positives = 284/540 (52%), Gaps = 59/540 (10%)

Query: 87  SYSTAVFNRIVNPNTFLWN-----TLLKGYSQNSRFIEVFTIFVRLIR-EEAV------- 133
           S+S++ F     P TF  +     TL+     + RF E   I  +  R +EA+       
Sbjct: 11  SHSSSPFQ----PKTFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQID 66

Query: 134 -PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
            P    +  +I++C     +++G  +H  +   G    +F+   L+++Y K   +  ++K
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252
           +FDEMPER++ SW  +I GYA +G L EAK++FD MPER N SW A+I G V+      A
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 253 RQLFDEMP----------------------------------------ERNVVSYTTMID 272
            +LF  M                                         + + V ++ + D
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y K G +  AR +F+   DRD+V W+A+I  Y Q+G+  E   +F+D+    ++P+EF 
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
              +++AC+   + +L   V  Y++R   D   +   +ALV M +KCGNM  A  +F+  
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFD-PFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P  D+ S+ S+I G + +G   +A+  F+ ++  G  PD + F  VL+AC+H GLV+ G 
Sbjct: 366 PQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGL 425

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
            +F +++  Y +  + +HYAC++DLL R+G    A  +++ M ++P    W +LLG C++
Sbjct: 426 DYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRI 485

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +++L +  A  LFE+EP+N  +YV L+NIYATA  W +V  +R  M +RG+ K PG S
Sbjct: 486 HGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLS 545



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 182/362 (50%), Gaps = 38/362 (10%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIK 144
           L  + ++F+++   + F W  ++ GY ++ R  E   +F  + R + +  +K+T    + 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A + V  +R G  IH  ++R G+D D  V ++L D+YGK   I  AR +FD+M +R++V+
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNAL-IGGLVKIGDLRSARQLFDEMPE 261
           WTAMI  Y   G   E    FDL  +  RS +  N     G++       A Q  +E+ +
Sbjct: 272 WTAMIDRYFQDGRRKEG---FDLFADLLRSGIRPNEFTFSGVLNA----CANQTSEELGK 324

Query: 262 RNVVSYTT-------------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           + V  Y T             ++  Y+K G+M SA  +F+  P  D+ +W++LI+GYAQN
Sbjct: 325 K-VHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQN 383

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG----NLDLSNWVDSYLSRSHMDLS 364
           GQPDEA++ F  +     QPD    V ++SAC+  G     LD  + +      +H    
Sbjct: 384 GQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHT--- 440

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH----GRQAVSL 419
            A   A ++D+ A+ G  D A  +   M  + D   + S++ G  IHG+     R A +L
Sbjct: 441 -ADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEAL 499

Query: 420 FD 421
           F+
Sbjct: 500 FE 501



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 164/348 (47%), Gaps = 36/348 (10%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H +I++ GL+ D  +V   +S  +     +  +  +F+++V+ +   W  ++  Y Q+
Sbjct: 224 EIHGYIMRTGLDSD-EVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R  E F +F  L+R    P+++TF  V+ AC++  S   G  +H  + R G D   F  
Sbjct: 283 GRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAA 342

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PE 230
           ++L+ +Y K   +  A +VF E P+ ++ SWT++I GYA  G   EA   F+L+     +
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
             ++++  ++      G +      F  + E+  +++T   D YA + D+          
Sbjct: 403 PDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTA--DHYACIIDL---------- 450

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
                          A++GQ DEA  I S M   +++PD+F+  SL+  C   GNL L+ 
Sbjct: 451 --------------LARSGQFDEAENIISKM---SMKPDKFLWASLLGGCRIHGNLKLAQ 493

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
                L     +    +V   L ++ A  G     A++ +TM +R VV
Sbjct: 494 RAAEALFEIEPENPATYV--TLANIYATAGMWSEVAKIRKTMDDRGVV 539


>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
          Length = 596

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 273/493 (55%), Gaps = 13/493 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  ++  FN I   N   WNT+L  +S+N  F +V  +F R+++E  + D +     +KA
Sbjct: 12  LHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKA 71

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C  +   +     H+  I+  ++ D +V  +L+++Y +   +  A KVF+E+P +N V W
Sbjct: 72  CFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIW 131

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALI-GGLVKI-GDLRSARQLFDEMPE 261
             MI GY    +  E   VF+L     RS    +  +  GL++  G++ + ++       
Sbjct: 132 GVMIKGYL---NFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGL 188

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
                Y   + G+     +  A  LFE    RBVV WSA+I+G+A+NG+  E++ +F  M
Sbjct: 189 YFSSGYVYEVRGF-----LDXALXLFEXIXYRBVVVWSAIIAGFARNGRALESISMFRQM 243

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
            + +V P+     S++ ACS +G+L     V  Y+ R+ ++L   +   + +DM AKCG 
Sbjct: 244 LADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNY-TSFIDMYAKCGC 302

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  +F  +P ++V S+ +MI G  +HG   +A++LF  M S    P+ V F  VL+A
Sbjct: 303 IVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSA 362

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH G +E+GW  F++M   Y I P  EHYACMVDLLGR G +  A   +N+MP EP AS
Sbjct: 363 CSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGAS 422

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
           AWGALLGAC+++   EL E VA +L  LE   +G YV+LSNIYA    W  V   R KM 
Sbjct: 423 AWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMC 482

Query: 562 ERGLRKIPGCSSL 574
           E+GL KI G +S+
Sbjct: 483 EKGLLKIVGFTSI 495



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 142/347 (40%), Gaps = 57/347 (16%)

Query: 208 MIVG-YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN--V 264
           MI G Y  +G L  A   F+ +   +  SWN ++    K        QLF  M +    V
Sbjct: 1   MIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV 60

Query: 265 VSYT-------------------------------------TMIDGYAKVGDMTSARSLF 287
            S+                                       +++ Y ++G +  A  +F
Sbjct: 61  DSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVF 120

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV-GNL 346
           E  P ++ V W  +I GY    +     ++FS M     + D F++  L+ AC  V    
Sbjct: 121 EEVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGK 180

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +   +   Y S  ++   R              G +D A  LFE +  RBVV + ++I G
Sbjct: 181 EGKTFHGLYFSSGYVYEVR--------------GFLDXALXLFEXIXYRBVVVWSAIIAG 226

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + +G   +++S+F +ML++ +TP+ V F  ++ ACS +G ++ G R          +  
Sbjct: 227 FARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQG-RSVHGYMIRNGVEL 285

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
             ++Y   +D+  + G + +AY +   +P E +  +W  ++    ++
Sbjct: 286 DVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMINGFGMH 331



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           VH ++I+ G+E D      FI +   C  + T    +  VF +I   N F W+T++ G+ 
Sbjct: 274 VHGYMIRNGVELDVKNYTSFIDMYAKCGCIVT----AYRVFCQIPEKNVFSWSTMINGFG 329

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDV 171
            +    E   +F  +     +P+  TF  V+ ACSH   + EG +   ++ R +G+    
Sbjct: 330 MHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVE 389

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMI 209
                ++DL G+  +I  A    + MP E    +W A++
Sbjct: 390 EHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALL 428


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 291/512 (56%), Gaps = 50/512 (9%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           L Q+H+ +IK    +D    A  +     S    L Y+  +F  +  PN F +NTL++  
Sbjct: 4   LKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRAL 63

Query: 112 SQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           S+++   +   +F+ ++ + +V P+ +TFP V KAC     +REG  +H   +++G+D D
Sbjct: 64  SESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSD 123

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            FV ++++ +Y     +SC                          G + +A  +F     
Sbjct: 124 EFVVSNVVRMY-----LSC--------------------------GVMEDAHRLF----- 147

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                    + G   I D +  R++     + +VV +  MIDGY ++G++  AR+LF+  
Sbjct: 148 ----YRRVFVDGCDGIRDKK--RRV-----DGDVVLWNVMIDGYVRIGELEVARNLFDEM 196

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
           P R VV+W+ +I+GYAQ+G   EAV++F +M    V P+   LVS++ A S++G L+L  
Sbjct: 197 PQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGK 256

Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
           WV  Y  R+++ +    + +AL+DM AKCG++++A ++FE +P R+VV++ ++I GL++H
Sbjct: 257 WVHLYAVRNNIGVDDV-LGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMH 315

Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
           G  +  +  F+ M   G+ P +V +  +L+ACSH GLV +G  FF+ M  V  + P  EH
Sbjct: 316 GRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEH 375

Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
           Y CMVDLLGR G L+ + EL+ +MP++P    W ALLGACK++ ++E+G+ VA  L EL 
Sbjct: 376 YGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELA 435

Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           P ++GSYV LSNIYA+   W  V  VR  MKE
Sbjct: 436 PHDSGSYVALSNIYASLGNWEGVAKVRLMMKE 467



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 47/322 (14%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F+ +   +   WN ++ GY+Q+  F E   +F  +   E  P+  T   V+ A
Sbjct: 186 LEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPA 245

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            S + ++  G  +H   +R  +  D  +G++LID+Y K   I  A +VF+ +P+RNVV+W
Sbjct: 246 MSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTW 305

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER-----SNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           + +I G A  G   +    F+ M ER     S+V++  L+      G +   R  FD M 
Sbjct: 306 STIIAGLAMHGRAKDTLDHFEDM-ERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMV 364

Query: 261 -----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
                E  +  Y  M+D   + G +  +  L    P                        
Sbjct: 365 RVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP------------------------ 400

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
                     ++PD+ I  +L+ AC   GN+++   V  +L       S ++V  AL ++
Sbjct: 401 ----------IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYV--ALSNI 448

Query: 376 NAKCGNMDRAAELFETMPNRDV 397
            A  GN +  A++   M   DV
Sbjct: 449 YASLGNWEGVAKVRLMMKEMDV 470


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 165/409 (40%), Positives = 249/409 (60%), Gaps = 9/409 (2%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           D     +L+  +    ++  AR +F  MP   RNV SW  M+ G +  G + EA+ VF  
Sbjct: 81  DAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLA 140

Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-NVVSYTTMIDGYAKVGDMTSARSL 286
           MP R+++SWNA++      GD+ +A + F++ P++ N V +T M+ GY   G +  A   
Sbjct: 141 MPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQF 200

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGN 345
           FEA P R +V+W+A+++GY +N + ++A+ +F  M    +V+P+E  L S++  CS +  
Sbjct: 201 FEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSA 260

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
           L     V  + ++  + LSR  V A  +LV M  KCG++D A +LF  M  RDV+++ +M
Sbjct: 261 LGFGRQVHQWCTK--LPLSR-RVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAM 317

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G + HG GR+A+ LF++M S+G+ P+ + F  VLTAC H G+ + G + FE MQ VY 
Sbjct: 318 ISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYG 377

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           I    +HY+CMVDLL R G L+ A  L+ SMP +PH SA+G LL A ++Y ++E  E  A
Sbjct: 378 IEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAA 437

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +L E  PQNAG+YV L+NIYA A++W DV  VR  MK+  + K PG S
Sbjct: 438 GKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYS 486



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 57/354 (16%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ +  +F+RI  P+   +NTLL  +           +F  +       +  ++  ++  
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAM--PATARNVTSWNTMLSG 124

Query: 146 CSHVLSVREGTAIHAAV-----IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            S   +V E  A+  A+     I W          +++  +    ++  A + F++ P++
Sbjct: 125 LSRSGAVGEARAVFLAMPARNSISW---------NAMVSCFAHAGDMCAAEECFEDAPDK 175

Query: 201 -NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-------------- 245
            N V WTAM+ GY   G + +A   F+ MP RS VSWNA++ G VK              
Sbjct: 176 ENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTM 235

Query: 246 -------------------------IGDLRSARQLFDEMP-ERNVVSYTTMIDGYAKVGD 279
                                    +G  R   Q   ++P  R V + T+++  Y K GD
Sbjct: 236 VRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGD 295

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  A  LF     RDV+AW+A+ISGYA +G   EA+++F  M S+ V+P+    V++++A
Sbjct: 296 LDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTA 355

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           C   G  D        +   +   +R    + +VD+  + G+++RA  L  +MP
Sbjct: 356 CIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMP 409



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 146/323 (45%), Gaps = 46/323 (14%)

Query: 216 GDLV---EAKTVFDLMPERSNVS-WNALIGGLVKIGD--------LRSARQLFDEMPERN 263
           GDL    E + V    P+R   + +N L+ G  +           L  AR LFD +P  +
Sbjct: 22  GDLAGAAEPEAVASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPD 81

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            VSY T++  +   GD+  AR LF A P   R+V +W+ ++SG +++G   EA  +F  M
Sbjct: 82  AVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAM 141

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
            ++N         +++S  +  G++  +            D   A +  A+V      G+
Sbjct: 142 PARN----SISWNAMVSCFAHAGDMCAAE----ECFEDAPDKENAVLWTAMVSGYMDSGH 193

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLT 440
           +++A + FE MP R +VS+ +++ G   +     A+ +F  M+ +  + P+E   + VL 
Sbjct: 194 VEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLL 253

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
            CS++  +  G +                H  C    L R     +A   L SM  +   
Sbjct: 254 GCSNLSALGFGRQV---------------HQWCTKLPLSRR---VTAGTSLVSMYCKC-- 293

Query: 501 SAWGALLGACKLYSDIELGELVA 523
              G L GACKL+S++ + +++A
Sbjct: 294 ---GDLDGACKLFSEMRIRDVIA 313


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 161/474 (33%), Positives = 268/474 (56%), Gaps = 44/474 (9%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F   ++ C  +  +++   IHA +++  + +  F+ T ++DL      +  A  +F ++ 
Sbjct: 10  FVTTLRNCPKIAELKK---IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLE 66

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLM------------------------------ 228
             NV S+ A+I  Y        A TVF+ M                              
Sbjct: 67  NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQ 126

Query: 229 ----------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                     P+   ++ NALI    K GD+  A Q+++EM ER+ VS+ ++I G+ ++G
Sbjct: 127 QVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLG 186

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
            M SAR +F+  P R +V+W+ +I+GYA+ G   +A+ IF +M    ++PDE  ++S++ 
Sbjct: 187 QMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLP 246

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+Q+G L++  W+  Y  +S   L  A V  ALV+M AKCG +D A  LF  M  +DV+
Sbjct: 247 ACAQLGALEVGKWIHKYSEKSGF-LKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVI 305

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           S+ +MI GL+ HG G  A+ +F+ M   G+TP+ V F  VL+AC+H GL  +G R+F+ M
Sbjct: 306 SWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVM 365

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
           +  Y + P  EHY C+VDLLGR+G ++ A + +  MP++P +  W +LL +C+++ ++E+
Sbjct: 366 RVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEI 425

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             +   +L +LEP+ +G+YVLL+NIYA  D+W  V  VR  ++ + ++K PGCS
Sbjct: 426 AVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCS 479



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 234/469 (49%), Gaps = 52/469 (11%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           +T ++ C     L ++H+HI+K  L Q + LV   + LC +L + + Y+T +F ++ NPN
Sbjct: 11  VTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNL-SHVDYATMIFQQLENPN 69

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
            F +N +++ Y+ N +     T+F +++  + A PDK+TFP VIK+C+ +L  R G  +H
Sbjct: 70  VFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVH 129

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A V ++G         +LID+Y K  ++S A +V++EM ER+ VSW ++I G+  +G + 
Sbjct: 130 AHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMK 189

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE------------ 261
            A+ VFD MP R+ VSW  +I G  + G    A  +F EM      P+            
Sbjct: 190 SAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACA 249

Query: 262 ---------------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
                                +N   +  +++ YAK G +  A  LF    ++DV++WS 
Sbjct: 250 QLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWST 309

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRS 359
           +I G A +G+   A+++F DM    V P+    V ++SAC+  G  +    + D      
Sbjct: 310 MIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDY 369

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAVS 418
           H++    H    LVD+  + G +++A +    MP + D  ++ S++    IH +   AV 
Sbjct: 370 HLEPQIEHY-GCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVV 428

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
             +++L   L P+E     VL A  +  L  D W   E + NV  ++ S
Sbjct: 429 AMEQLLK--LEPEESG-NYVLLANIYAKL--DKW---EGVSNVRKLIRS 469


>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Brachypodium distachyon]
          Length = 697

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 183/544 (33%), Positives = 293/544 (53%), Gaps = 14/544 (2%)

Query: 43  LIKKCKLQ---THLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+K C +     H   +H+  I+       + VA  +   ++    +  S   +N    P
Sbjct: 105 LLKACAMLPALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEP 164

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVR-LIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
           +  L  +++ GY QN    E    F R ++ +  +P   T   VI A + +  V  G A 
Sbjct: 165 DMVLRTSMVTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQAC 224

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA VIR   + D+ +  +++  Y +   +  AR++F+ M E++VV+W+ M+ GY   GD+
Sbjct: 225 HAFVIRNNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDI 284

Query: 219 VEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTM 270
            EA T +  M E     + V+  +++       D+   R++ D       E  +   T +
Sbjct: 285 CEALTAYKKMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATAL 344

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +D Y K      A  LF     +D VAW+ +ISG+ QNG PDE++++F  M      PD 
Sbjct: 345 VDMYMKCSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDA 404

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             +V +++ACS+ G +  +  +  YL  +     +  V AALVD+ +KCGN+  A  +FE
Sbjct: 405 VTMVKVLAACSESGVMRQAFCLHGYLVITGF-CDKIFVAAALVDLYSKCGNLGCAVRVFE 463

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
           +   +DVV + SMI G  +HG G+QAV LF  M++  + P+ + F  VL+ACSH GLV++
Sbjct: 464 SAMEKDVVLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQE 523

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G R FE+M  VY +VP+  H++ MVDLLGR G L+ A +LL+       A  W ALL AC
Sbjct: 524 GKRIFESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAAC 582

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
           + + D E+ E+VA +L +L+P +AG Y LL+NIY   + W      R+ +++RGL K+PG
Sbjct: 583 RAHHDTEMSEVVAAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPG 642

Query: 571 CSSL 574
           CS++
Sbjct: 643 CSAV 646



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 47/279 (16%)

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           AR LF+  P       +AL+  + +  Q  +A+ +   +    V+PD F L  L+ AC+ 
Sbjct: 55  ARHLFDEIPVPTPRLANALLRAHVRARQWCDALLLIPCL---RVRPDAFTLSLLLKACAM 111

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +  L     + +   RS    + A V AALV M AKC  M  +   +      D+V   S
Sbjct: 112 LPALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTS 171

Query: 403 MIKGLSIHGHGRQAVSLFDR-MLSEGLTPDEVAFTIVLTACSH----------------- 444
           M+ G   +    +A+  F R ++ +G  P  V    V++A +                  
Sbjct: 172 MVTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRN 231

Query: 445 ------------------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL-- 484
                             +G V+   R FE M     +      ++CMV    ++G +  
Sbjct: 232 NFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVT-----WSCMVTGYVQSGDICE 286

Query: 485 -KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
             +AY+ +    ++P+A    +++ AC L  DIE G  V
Sbjct: 287 ALTAYKKMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRV 325


>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
 gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
          Length = 500

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 271/479 (56%), Gaps = 8/479 (1%)

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           +P    WN ++K +  N   ++    +V +       D +TFP+++KA     S   G A
Sbjct: 12  SPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIGLA 71

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H   I+ G    VFV T+L+++Y     ++ A KVF++MP ++VV+W +++  YAS   
Sbjct: 72  LHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQ 131

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV 277
           + +A  VF+ MP +   S+N +I G   IG   SAR +FD M E+++VS+ +MI  Y + 
Sbjct: 132 MDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQG 191

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
            DM  A  LF   P ++++ W+ ++ G+ QN    E + +F +M + N  PD   +  ++
Sbjct: 192 EDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVL 251

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
           SAC+  G+L     V  Y   + +  S  HV  AL+DM AKCG++ +  ++F     +D+
Sbjct: 252 SACAHSGSLKKGTEVHIYAIDNGL-ASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDI 310

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
             + ++I GL++HGHG  A+++F++M      PD++ F  +L+ACSH GLV++G + F +
Sbjct: 311 YCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYS 370

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           MQ  + I P  EHY CMVDLL R  HL  A +L+ +MP +P  +  GALL AC ++ D+E
Sbjct: 371 MQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGALLSACIVHQDLE 430

Query: 518 LGE----LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +GE    LV++R   L     G  ++ SN+YA+  +W +    R  M + G+ K  G S
Sbjct: 431 VGERVVKLVSSRGNYLSD---GELMMFSNLYASCGQWEEANKWREMMNDTGIVKTAGFS 486



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 133/316 (42%), Gaps = 44/316 (13%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F  +   N   WNT++KG+ QN  + EV  +F  +     +PD  T   V+ AC+H  S
Sbjct: 200 LFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGS 259

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +++GT +H   I  G+     V T+LID+Y K   I    +VF +   +++  W A+I G
Sbjct: 260 LKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISG 319

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS- 266
            A  G    A  +F+ M +      ++++  L+      G ++   QLF  M +   +S 
Sbjct: 320 LALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISP 379

Query: 267 ----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
               Y  M+D  ++   +  A  L +  P                               
Sbjct: 380 KIEHYGCMVDLLSRARHLDCALQLIKTMP------------------------------- 408

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
               +P E IL +L+SAC    +L++   V   +S     LS   ++    ++ A CG  
Sbjct: 409 ---FKPGEAILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGELM-MFSNLYASCGQW 464

Query: 383 DRAAELFETMPNRDVV 398
           + A +  E M +  +V
Sbjct: 465 EEANKWREMMNDTGIV 480


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 291/558 (52%), Gaps = 75/558 (13%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           S   F+R+   ++  W T++ GY    ++ +   I   ++RE   P ++T   V+ + + 
Sbjct: 99  SCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAA 158

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD------------- 195
              +  G  +H+ +++ G+  +V V  SL+++Y K  +   A+ VFD             
Sbjct: 159 TRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAM 218

Query: 196 ------------------EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-------PE 230
                             +M ER++V+W +MI GY   G  + A  +F  M       P+
Sbjct: 219 IALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPD 278

Query: 231 R---------------------------------SNVSWNALIGGLVKIGDLRSARQLFD 257
           R                                 S +  NALI    + G + +AR+L +
Sbjct: 279 RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338

Query: 258 EMPERN--VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
           +   ++  +  +T ++DGY K+GDM  A+++F++  DRDVVAW+A+I GY Q+G   EA+
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAI 398

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
            +F  M  +  +P+ + L +++S  S + +L     +     +S  ++    V  AL+ M
Sbjct: 399 NLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG-EIYSVSVSNALITM 457

Query: 376 NAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
            AK G++  A+  F+ +   RD VS+ SMI  L+ HGH  +A+ LF+ ML EGL PD + 
Sbjct: 458 YAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           +  V +AC+H GLV  G ++F+ M++V  I+P+  HYACMVDL GR G L+ A E +  M
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577

Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
           P+EP    WG+LL AC++Y +I+LG++ A RL  LEP+N+G+Y  L+N+Y+   +W +  
Sbjct: 578 PIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAA 637

Query: 555 LVRSKMKERGLRKIPGCS 572
            +R  MK+  ++K  G S
Sbjct: 638 KIRKSMKDGRVKKEQGFS 655



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 194/417 (46%), Gaps = 51/417 (12%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S L +  KC        V   ++ K +   ++++A      H     +  + A F ++  
Sbjct: 186 SLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIA-----LHMQVGQMDLAMAQFEQMAE 240

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTA 157
            +   WN+++ GY+Q    +    +F +++R+  + PD++T   V+ AC+++  +  G  
Sbjct: 241 RDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQ 300

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN--VVSWTAMIVGYASV 215
           IH+ ++  G D    V  +LI +Y +   +  AR++ ++   ++  +  +TA++ GY  +
Sbjct: 301 IHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM--PERNVVSYT----- 268
           GD+ EAK +FD + +R  V+W A+I G  + G    A  LF  M   E+   SYT     
Sbjct: 361 GDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAML 420

Query: 269 --------------------------------TMIDGYAKVGDMTSARSLFEAAP-DRDV 295
                                            +I  YAK G +TSA   F+    +RD 
Sbjct: 421 SVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDS 354
           V+W+++I   AQ+G  +EA+++F  M  + ++PD    V + SAC+  G ++    + D 
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIH 410
                 +  + +H  A +VD+  + G +  A E  E MP   DVV++ S++    ++
Sbjct: 541 MKDVDKIIPTLSHY-ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVY 596



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 201/487 (41%), Gaps = 118/487 (24%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  VI+ G+   V++  +L+++Y K      ARK+FDEMP R   SW  ++  YA  GD
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER--------------- 262
           +  +   FD +P+R +VSW  +I G   IG    A ++  EM                  
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 263 ------------------------NVVSYTTMIDGYAKVGD------------------- 279
                                   NV    ++++ YAK GD                   
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 280 ------------MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-V 326
                       M  A + FE   +RD+V W+++ISGY Q G    A+ +FS M   + +
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC------- 379
            PD F L S++SAC+ +  L +   + S++  +  D+S   V+ AL+ M ++C       
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDIS-GIVLNALISMYSRCGGVETAR 334

Query: 380 --------------------------GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
                                     G+M+ A  +F+++ +RDVV++ +MI G   HG  
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLY 394

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA- 472
            +A++LF  M+ E   P+      +L+  S +  +  G +   +       V S E Y+ 
Sbjct: 395 GEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSA------VKSGEIYSV 448

Query: 473 ----CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG-ELVANRLF 527
                ++ +  + G + SA    + +  E    +W +++ A   +   E   EL    L 
Sbjct: 449 SVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM 508

Query: 528 E-LEPQN 533
           E L P +
Sbjct: 509 EGLRPDH 515



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 109/245 (44%), Gaps = 19/245 (7%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L + L++        H  Q+H   +K G     S+    I++ ++ A  ++ ++ 
Sbjct: 411 PNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITM-YAKAGSITSASR 469

Query: 92  VFNRI-VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            F+ I    +T  W +++   +Q+    E   +F  ++ E   PD  T+  V  AC+H  
Sbjct: 470 AFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAG 529

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGT-----SLIDLYGKRKEISCARKVFDEMP-ERNVVS 204
            V +G      +     D D  + T      ++DL+G+   +  A++  ++MP E +VV+
Sbjct: 530 LVNQGRQYFDMM----KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVT 585

Query: 205 WTAMIVG---YASVGDL--VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           W +++     Y ++ DL  V A+ +  L PE S  +++AL       G    A ++   M
Sbjct: 586 WGSLLSACRVYKNI-DLGKVAAERLLLLEPENSG-AYSALANLYSACGKWEEAAKIRKSM 643

Query: 260 PERNV 264
            +  V
Sbjct: 644 KDGRV 648


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 298/545 (54%), Gaps = 17/545 (3%)

Query: 42  TLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+  C +   L    Q HS IIKK L ++   V + +   ++    L  +  +F  + +
Sbjct: 433 SLLSTCAVSHDLEMGSQFHSIIIKKKLTKN-LFVGNALVDMYAKCGALEDARQIFEHMCD 491

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            +   WNT++ GY Q+    E F +F+R+     V D       +KAC++V  + +G  +
Sbjct: 492 RDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQV 551

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   ++ G+D  +  G+SLID+Y K   I  ARKVF  MPE +VVS  A+I GY S  +L
Sbjct: 552 HCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGY-SQNNL 610

Query: 219 VEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TT 269
            EA  +F  M  +    S +++  ++    K   L    Q   ++ +    S       +
Sbjct: 611 EEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGIS 670

Query: 270 MIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
           ++  Y     M  A +LF E +  + +V W+ ++SG++QNG  +EA+K + +M      P
Sbjct: 671 LLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALP 730

Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
           D+   V+++  CS + +L     + S +     DL        L+DM AKCG+M  ++++
Sbjct: 731 DQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDEL-TSNTLIDMYAKCGDMKSSSQV 789

Query: 389 FETMPNR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           F+ M  R +VVS+ S+I G + +G+   A+ +FD M    + PDE+ F  VLTACSH G 
Sbjct: 790 FDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGK 849

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           V DG + FE M   Y I    +H ACMVDLLGR G+L+ A + + +  ++P A  W +LL
Sbjct: 850 VSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLL 909

Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           GAC+++ D   GE+ A RL ELEPQN+ +YVLLSNIYA+  RW +   +R  M++RG++K
Sbjct: 910 GACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKK 969

Query: 568 IPGCS 572
           +PG S
Sbjct: 970 VPGYS 974



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 228/469 (48%), Gaps = 24/469 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH+  IK GL  +  + +  +S+ +S    +  +  VF  +   N  LWN +++GY+ N 
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSM-YSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNG 407

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
              +V  +F+ +       D +TF  ++  C+    +  G+  H+ +I+  + +++FVG 
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGN 467

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           +L+D+Y K   +  AR++F+ M +R+ VSW  +I GY    +  EA  +F  M     VS
Sbjct: 468 ALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVS 527

Query: 236 WNALIGGLVK----IGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
             A +   +K    +  L   +Q+         +R + + +++ID Y+K G +  AR +F
Sbjct: 528 DGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVF 587

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
            + P+  VV+ +ALI+GY+QN   +EAV +F +M +K V P E    +++ AC +  +L 
Sbjct: 588 SSMPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLT 646

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKG 406
           L       + +        ++  +L+ +      M  A  LF  + + + +V +  M+ G
Sbjct: 647 LGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSG 706

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            S +G   +A+  +  M  +G  PD+  F  VL  CS +  + +G       + +++++ 
Sbjct: 707 HSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREG-------RAIHSLIF 759

Query: 467 SPEH------YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
              H         ++D+  + G +KS+ ++ + M    +  +W +L+  
Sbjct: 760 HLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLING 808



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 221/464 (47%), Gaps = 52/464 (11%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VHS  +  G++ +  L    + L ++    +SY+   FN +   +   WN++L  YS   
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDL-YAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIG 139

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
           +  +V   FV L      P+K+TF +V+   +   +V  G  IH ++I+ G++ + + G 
Sbjct: 140 QPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGG 199

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS--- 232
           +L+D+Y K   +  A++VFD + + N V WT +  GY   G   EA  VF+ M       
Sbjct: 200 ALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRP 259

Query: 233 -NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
            ++++  +I   + +G L+ AR LF EMP  +VV++  MI G+ K G             
Sbjct: 260 DHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRG------------- 306

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
             ++V                 A++ F +M   +V+     L S++SA   V NLDL   
Sbjct: 307 -CEIV-----------------AIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           V +   +  +  S  +V ++LV M +KC  M+ AA++FE +  R+ V + +MI+G + +G
Sbjct: 349 VHAEAIKLGL-ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNG 407

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM------QNVYAIV 465
              + + LF  M S G   D+  FT +L+ C+    +E G +F   +      +N++   
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFV-- 465

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                   +VD+  + G L+ A ++   M    + S W  ++G 
Sbjct: 466 -----GNALVDMYAKCGALEDARQIFEHMCDRDNVS-WNTIIGG 503



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 162/361 (44%), Gaps = 64/361 (17%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           +RKVFDEMP R  ++          +G  V +K+               LI G+   G L
Sbjct: 61  SRKVFDEMPHRLALALR--------IGKAVHSKS---------------LILGIDSEGRL 97

Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
            +A                 ++D YAK   ++ A   F +  ++DV AW++++S Y+  G
Sbjct: 98  GNA-----------------IVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIG 139

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR-AHV 368
           QP + ++ F  +    + P++F    ++S  ++  N++    +  + S   M L R ++ 
Sbjct: 140 QPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQI--HCSMIKMGLERNSYC 197

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             ALVDM AKC  +  A  +F+ + + + V +  +  G    G   +AV +F+RM  EG 
Sbjct: 198 GGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGH 257

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--CMVDLLGRTGHLKS 486
            PD +AF  V+     +G ++D    F  M       PSP+  A   M+   G+ G    
Sbjct: 258 RPDHLAFVTVINTYISLGKLKDARLLFGEM-------PSPDVVAWNVMISGHGKRGCEIV 310

Query: 487 AYELLNSM---PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           A E   +M    V+   S  G++L A  + ++++LG +V     +L         L SNI
Sbjct: 311 AIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLG--------LASNI 362

Query: 544 Y 544
           Y
Sbjct: 363 Y 363


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 187/519 (36%), Positives = 280/519 (53%), Gaps = 49/519 (9%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAVPDKYTFPLVIK 144
           L+ +TA+F+R    N   WN L+ GYS N    E    IF  + R E V    ++  ++ 
Sbjct: 72  LAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEV----SWNALLS 127

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           A +    V    +    + R     DV   T+LI + G+  ++  A  ++D +PER++V+
Sbjct: 128 AYAQAGHVHLARSTFERMPR----HDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVA 183

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
           WTA+I  Y   G L E+K V+ LMPER+ VS  A+I    + G++  AR++ D +P+ + 
Sbjct: 184 WTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQ 243

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA--------------------------- 297
            + T+MI  YA+ G +  AR +F++  + DV+A                           
Sbjct: 244 STRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQK 303

Query: 298 ----WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
               W+ +++ YAQ G  DEA  IF  +  KNV     ++V+         N+DL+    
Sbjct: 304 TLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVAY------AHNMDLAEARR 357

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
            + S   MD        A+V M A+ G +  A ELF  MP R+VVS+ S+I G++  GHG
Sbjct: 358 IFYS---MDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHG 414

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
             AV     M +EG  PD + F  +L ACSHVGLVE+GW  F +MQ  + ++P  EHY  
Sbjct: 415 MAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCR 474

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
           MVD+LGR G L +A ELL +MP  P   AWG+LLG+CK +SD++LG   A  L + + Q+
Sbjct: 475 MVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQS 534

Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +G YVLL+N+Y++  R  D   VR++MK RG++K PG S
Sbjct: 535 SGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVS 573



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 165/327 (50%), Gaps = 19/327 (5%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           +V    SLI  + +   +S A ++F  MP  +  SW +MI GYA  GDL  A  +FD  P
Sbjct: 24  NVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLAGATAMFDRTP 83

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQ-LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
           E + +SWNALI G      +  A+  +FDEMP R  VS+  ++  YA+ G +  ARS FE
Sbjct: 84  EHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEVSWNALLSAYAQAGHVHLARSTFE 143

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
             P  DVVAW+ALI+   QNGQ +EA ++  D+  +    D     +L+ A    G L  
Sbjct: 144 RMPRHDVVAWTALIAVSGQNGQLEEA-EVLYDLIPER---DLVAWTALIQAYGVNGQLTE 199

Query: 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408
           S  V + +   +     A +IA      ++ G + +A ++ +T+P+ D  +  SMI   +
Sbjct: 200 SKRVYALMPERNRVSHTAMIIAY-----SQNGEVVQARKMLDTLPDPDQSTRTSMIVAYA 254

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468
            +G+ + A  +FD + +    PD +A   ++ A S   +++     F++++    +    
Sbjct: 255 QNGYIKDAREMFDSIKN----PDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLV---- 306

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMP 495
             +  MV    + G+L  A  + +S+P
Sbjct: 307 -SWNTMVAAYAQAGNLDEAKSIFDSIP 332



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 163/335 (48%), Gaps = 24/335 (7%)

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237
           + +Y +  ++  A+ +FD++P  NVVSW ++I G++  G +  A  +F  MP  S+ SWN
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWN 60

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS-LFEAAPDRDVV 296
           ++I G  + GDL  A  +FD  PE NV+S+  +I GY+    +  A+  +F+  P R+ V
Sbjct: 61  SMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEV 120

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +W+AL+S YAQ G    A   F  M   +V        +L++   Q G L+ +  +   +
Sbjct: 121 SWNALLSAYAQAGHVHLARSTFERMPRHDV----VAWTALIAVSGQNGQLEEAEVLYDLI 176

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
                DL       AL+      G +  +  ++  MP R+ VS+ +MI   S +G   QA
Sbjct: 177 PER--DLV---AWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQA 231

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--M 474
             + D +      PD+   T ++ A +  G ++D    F++++N       P+  AC  M
Sbjct: 232 RKMLDTLPD----PDQSTRTSMIVAYAQNGYIKDAREMFDSIKN-------PDVIACNAM 280

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           ++       L  A  + +S+  +   S W  ++ A
Sbjct: 281 MEAYSSAQMLDHAKAMFDSIKQKTLVS-WNTMVAA 314



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 28/239 (11%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK-- 136
            +S A  L ++ A+F+ I       WNT++  Y+Q     E  +IF      +++P K  
Sbjct: 283 AYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIF------DSIPHKNV 336

Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE-DVFVGTSLIDLYGKRKEISCARKVFD 195
            +  +++ A +H + + E     A  I + +DE D    T+++ +  +   ++ A+++F 
Sbjct: 337 VSHNVMVVAYAHNMDLAE-----ARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFA 391

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRS 251
           +MP RNVVSW ++I G AS G  + A     +M        ++++  ++     +G +  
Sbjct: 392 KMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEE 451

Query: 252 ARQLFDEM-------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALI 302
               F  M       P R    Y  M+D   + G + +AR L E  P   DV AW +L+
Sbjct: 452 GWTHFTSMQGDHGLIPWRE--HYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLL 508


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 268/477 (56%), Gaps = 51/477 (10%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           ++AC+   S R+   +HA  +R  + +  ++ T ++ L      ++ A +VF ++ E N+
Sbjct: 20  LRACA---SFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNL 76

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW-------------------------- 236
               AMI  YA     ++A TV+  M  R    W                          
Sbjct: 77  HLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDL 136

Query: 237 --------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                               N+LI    + GDL  AR++FD M ER+VVS+ T+I  +A+
Sbjct: 137 GKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHAR 196

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           +G M  AR++F + PD+ VV+W+AL+SGY   G    AV+ F  M  +  +PD+  +V++
Sbjct: 197 LGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAV 256

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC+Q+G L+L  W+ +Y +R  M L   +V  ALV+M AKCG +D+A +LF  M  +D
Sbjct: 257 LPACAQLGALELGRWIYAYCNRHQM-LRETYVCNALVEMYAKCGCIDQALQLFNGMAEKD 315

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           V+S+ +M+ GL+ HG  ++AV LF  M  +G + P+ + F  +L+ACSH GL+++G  +F
Sbjct: 316 VISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYF 375

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           + M +VY I P  EHY C+VDLL R+G ++   +L++ MP+   A  WG++L AC+ + D
Sbjct: 376 DRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGD 435

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++   L A RL  LEP++ G+ V+L+N+YA A RW +V   R  ++ R +RK PGCS
Sbjct: 436 VDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCS 492



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 227/446 (50%), Gaps = 53/446 (11%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
           ++ C     L +VH+H ++  L Q   L    + LC++    ++++T VF+++  PN  L
Sbjct: 20  LRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGR-VAHATRVFSQVREPNLHL 78

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-------DKYTFPLVIKACSHVLSVREGT 156
            N ++K Y+QN R ++  T+++R++R    P       D++T+P ++KAC  ++++  G 
Sbjct: 79  HNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGK 138

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H  V+R G + +  V  SLI++Y +  ++  ARKVFD M ER+VVSW  +I  +A +G
Sbjct: 139 QVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLG 198

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE--------- 261
            + +A+ VF+ MP+++ VSW AL+ G    GD   A + F  M      P+         
Sbjct: 199 QMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLP 258

Query: 262 -----------RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
                      R + +Y               +++ YAK G +  A  LF    ++DV++
Sbjct: 259 ACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVIS 318

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLS-NWVDSY 355
           WS ++ G A +G+  EAV++F++M  +  V+P+    V L+SACS  G LD   ++ D  
Sbjct: 319 WSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRM 378

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGR 414
                ++    H    +VD+  + G + R  +L   MP   D   + S++     HG   
Sbjct: 379 NDVYGIEPGVEH-YGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVD 437

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLT 440
            AV   +R+++  L P++V   ++L 
Sbjct: 438 TAVLAAERLVA--LEPEDVGNLVMLA 461


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 191/559 (34%), Positives = 304/559 (54%), Gaps = 19/559 (3%)

Query: 29  INFPKPSCLLSALTLIKKCKLQTHLHQ-VHSHIIKKGLEQDHS-LVAHFISLCHSLATPL 86
           +N P+P  LL +          + L + VH+HI++       S L  H +++   L  P 
Sbjct: 1   MNVPRPPNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPN 60

Query: 87  SYSTAVFNRIVNPNTFL-WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           S    +   + NP T + W +L+ G   N RF      F  + RE  +P+ +TFP V KA
Sbjct: 61  SAQLVL--SLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKA 118

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
            + +     G  +HA  ++ G   DVFVG S  D+Y K      AR +FDEMP RN+ +W
Sbjct: 119 SASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATW 178

Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
            A +      G  ++A   F        E + +++ A +     I  L   RQL   +  
Sbjct: 179 NAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVR 238

Query: 262 ----RNVVSYTTMIDGYAKVGDMTSARSLFE--AAPDRDVVAWSALISGYAQNGQPDEAV 315
                +V  +  +ID Y K GD+ S+  +F    +  R+VV+W +L++   QN + + A 
Sbjct: 239 SRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERAC 298

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
            +F     K V+P +F++ S++SAC+++G L+L   V +   ++ ++     V +ALVD+
Sbjct: 299 MVFLQ-ARKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVE-ENIFVGSALVDL 356

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDEV 433
             KCG+++ A ++F  MP R++V++ +MI G +  G    A+SLF  M S   G+    V
Sbjct: 357 YGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYV 416

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
               VL+ACS  G VE G + FE+M+  Y I P  EHYAC+VDLLGR+G +  AYE +  
Sbjct: 417 TLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKR 476

Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553
           MP+ P  S WGALLGACK++   +LG++ A +LFEL+P ++G++V+ SN+ A+A RW + 
Sbjct: 477 MPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEA 536

Query: 554 CLVRSKMKERGLRKIPGCS 572
            +VR +M++ G++K  G S
Sbjct: 537 TIVRKEMRDIGIKKNVGYS 555


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 169/491 (34%), Positives = 284/491 (57%), Gaps = 14/491 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ + + +   WN+++ G + N  + +   +FVR+  E    D  T   V+ AC+ +  
Sbjct: 253 VFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHL 312

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H   ++ G      +   L+D+Y    +     K+F  M ++NVVSWTAMI  
Sbjct: 313 LFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITS 372

Query: 212 YASVGDLVEAKTVFDLMP---ERSNV-----SWNALIGG-LVKIGDLRSARQLFDEMPER 262
           Y   G   +   +F  M     R ++     + +A  G  L+K G       + + M E+
Sbjct: 373 YTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGM-EK 431

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
            +     +++ Y K G+M  A+ +F+    +D+++W+ LI GY++N   +EA  +F++M 
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML 491

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAHVIAALVDMNAKCGN 381
            + ++P+   +  ++ A + + +L+    + +Y L R +  L    V  AL+DM  KCG 
Sbjct: 492 LQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGY--LEDDFVANALIDMYVKCGA 548

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  LF+ + N++++S+  M+ G  +HG GR A++LF++M   G+ PD  +F+ +L A
Sbjct: 549 LLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYA 608

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GL ++GWRFF+AM+  + I P  +HY CMVDLL  TG+LK AYE ++SMP+EP +S
Sbjct: 609 CSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSS 668

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            W +LL  C+++ +++L E VA R+FELEP+N G YVLL+NIYA A+RW  V  +++K+ 
Sbjct: 669 IWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIG 728

Query: 562 ERGLRKIPGCS 572
            RGLR+  GCS
Sbjct: 729 GRGLRENTGCS 739



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 10/357 (2%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           +W  L+ GY++     E   +F ++      PD YT   V+K  + + S+ +G  +H  +
Sbjct: 163 VWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLL 222

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            + G      VG +L+  Y K      A  VFD MP R+V+SW +MI G  S G   +A 
Sbjct: 223 EKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAI 282

Query: 223 TVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT----MIDGY 274
            +F  M     E  + +  +++    ++  L   R +     +   +S T+    ++D Y
Sbjct: 283 ELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMY 342

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           +   D  S   +F     ++VV+W+A+I+ Y + G  D+   +F +M  +  +PD F + 
Sbjct: 343 SNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAIT 402

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S + A +    L     V  Y  R+ M+   A V  AL++M  KCGNM+ A  +F+ + +
Sbjct: 403 SALHAFAGNELLKHGKSVHGYAIRNGMEKVLA-VTNALMEMYVKCGNMEEAKLIFDGVVS 461

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           +D++S+ ++I G S +    +A SLF  ML + L P+ V  T +L A + +  +E G
Sbjct: 462 KDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERG 517



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 204/429 (47%), Gaps = 37/429 (8%)

Query: 127 LIREEAVPDKYTFPLVIKACSHVLSVREGTAIH-----AAVIRWGVDEDVFVGTSLIDLY 181
           L+  + V D+ ++  V++ CS V S+  G   H     +++ R G+D    +G  L+ +Y
Sbjct: 83  LLGSDGVDDR-SYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDN--VLGQKLVLMY 139

Query: 182 GKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNV 234
            K  ++  AR+VFDEMP+  +V  WTA++ GYA  GDL E   +F  M      P+   +
Sbjct: 140 LKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTI 199

Query: 235 SWN-ALIGGLVKIGDLRSARQLFDEMPERNVVSY-TTMIDGYAKVGDMTSARSLFEAAPD 292
           S     I GL  I D      L +++   +  +    ++  YAK      A  +F+  P 
Sbjct: 200 SCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPH 259

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           RDV++W+++ISG   NG  D+A+++F  M  +  + D   L+S++ AC+++  L L   V
Sbjct: 260 RDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVV 319

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
             Y  ++   +S+  +   L+DM + C +     ++F  M  ++VVS+ +MI   +  G 
Sbjct: 320 HGYSVKTGF-ISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGL 378

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE-----DGWRFFEAMQNVYAIVPS 467
             +   LF  M  EG  PD  A T  L A +   L++      G+     M+ V A+  +
Sbjct: 379 YDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNA 438

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE----LVA 523
                 ++++  + G+++ A  + + + V     +W  L+G    YS   L      L  
Sbjct: 439 ------LMEMYVKCGNMEEAKLIFDGV-VSKDMISWNTLIGG---YSRNNLANEAFSLFT 488

Query: 524 NRLFELEPQ 532
             L +L P 
Sbjct: 489 EMLLQLRPN 497



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    + SAL      +L  H   VH + I+ G+E+  ++    + + +     +  +  
Sbjct: 396 PDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEM-YVKCGNMEEAKL 454

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +V+ +   WNTL+ GYS+N+   E F++F  ++  +  P+  T   ++ A + + S
Sbjct: 455 IFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL-QLRPNAVTMTCILPAAASLSS 513

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA  +R G  ED FV  +LID+Y K   +  AR++FD +  +N++SWT M+ G
Sbjct: 514 LERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAG 573

Query: 212 YASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           Y   G   +A  +F+ M      P+ +  S++A++      G      + FD M + + +
Sbjct: 574 YGMHGRGRDAIALFEQMRVSGIAPDAA--SFSAILYACSHSGLRDEGWRFFDAMRKEHKI 631

Query: 266 S-----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISG 304
                 YT M+D     G++  A    ++ P + D   W +L+ G
Sbjct: 632 EPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRG 676



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 274 YAKVGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           Y K GD+ +AR +F+  P   DV  W+AL+SGYA+ G   E V +F  M    V+PD + 
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           +  ++   + +G+++    V   L +     S+  V  AL+   AK      A  +F+ M
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFG-SQCAVGNALMAFYAKSNRTKDAILVFDGM 257

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P+RDV+S+ SMI G + +G   +A+ LF RM  EG   D      VL AC+ + L+  G 
Sbjct: 258 PHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLG- 316

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
           R           +        ++D+       +S  ++  +M V+ +  +W A++ +   
Sbjct: 317 RVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNM-VQKNVVSWTAMITS--- 372

Query: 513 YSDIELGELVANRLFE--LEPQNAGSYVLLSNIYATA 547
           Y+   L + VA    E  LE      + + S ++A A
Sbjct: 373 YTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFA 409


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 149/323 (46%), Positives = 217/323 (67%), Gaps = 1/323 (0%)

Query: 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
           AR +F EM  R+VV++  MI GY K GD+  AR LF+A P+R+VV+W+ +I GYAQ  +P
Sbjct: 133 ARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRP 192

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           +EAV++F  M  + ++PD   L+S++SAC  +G +DL  WV  ++ R  +      ++ +
Sbjct: 193 EEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLR-QEIPLMNS 251

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           ++DM  KCG +++A E+FE M  + VV++ ++I G ++HG G QAV +F RM  E + P+
Sbjct: 252 IIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPN 311

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           +V F  +L+ACSHVGL + G  +F  M + Y I P  EHY CMVDLLGR G LK A +L+
Sbjct: 312 DVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLV 371

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             MP++ +A+ WGALL A + + D +LGE     L ELEP N+G+Y+LLSNI+A  +RW 
Sbjct: 372 KDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWD 431

Query: 552 DVCLVRSKMKERGLRKIPGCSSL 574
           DV  +R  MKERGLR +PG SS+
Sbjct: 432 DVSKLRKAMKERGLRNVPGASSI 454



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 134/279 (48%), Gaps = 40/279 (14%)

Query: 155 GTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           G  +H+ ++R G V  D  V  SL+ LY   + ++ AR VF EM  R+VV+W  MI GY 
Sbjct: 97  GPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYV 156

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP------------- 260
             GDL  A+ +FD MPER+ VSW  +IGG  ++     A ++F  M              
Sbjct: 157 KAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLS 216

Query: 261 -----------------ERNVVS---------YTTMIDGYAKVGDMTSARSLFEAAPDRD 294
                             R VV            ++ID Y K G +  A  +FE   ++ 
Sbjct: 217 VLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKS 276

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           VV W+ LI+G+A +G   +AV++F  M  +N+ P++   ++++SACS VG  DL  W  +
Sbjct: 277 VVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFN 336

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            +   +    +      +VD+  + G +  A +L + MP
Sbjct: 337 IMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMP 375



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 12/241 (4%)

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
           A  L+++  +F+ +   N   W T++ GY+Q  R  E   +F R+  E   PD      V
Sbjct: 158 AGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSV 217

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           + AC  + +V  G  +H  V+R G+ +++ +  S+ID+Y K   I  A +VF+ M E++V
Sbjct: 218 LSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSV 277

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFD 257
           V+WT +I G+A  G  ++A  +F  M ER N++ N     A++     +G     R  F+
Sbjct: 278 VTWTTLIAGFALHGLGLQAVEMFRRM-ERENMAPNDVTFLAILSACSHVGLTDLGRWYFN 336

Query: 258 EMPER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQP 311
            M  +      V  Y  M+D   + G +  A+ L +  P + +   W AL++    +G  
Sbjct: 337 IMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDA 396

Query: 312 D 312
           D
Sbjct: 397 D 397



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 51/246 (20%)

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L   + S L R+    S  HV A+LV +   C ++  A  +F  M  RDVV++  MI G 
Sbjct: 96  LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGY 155

Query: 408 SIHG---HGR----------------------------QAVSLFDRMLSEGLTPDEVAFT 436
              G   H R                            +AV +F RM  EG+ PD VA  
Sbjct: 156 VKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALL 215

Query: 437 IVLTACSHVGLVEDG-W-RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
            VL+AC  +G V+ G W   F   + +   +P       ++D+  + G ++ A E+   M
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPL---MNSIIDMYMKCGCIEKAVEVFEGM 272

Query: 495 PVEPHASAWGAL----------LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
             E     W  L          L A +++  +E   +  N +  L   +A S+V L+++ 
Sbjct: 273 E-EKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDL- 330

Query: 545 ATADRW 550
               RW
Sbjct: 331 ---GRW 333


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 271/486 (55%), Gaps = 49/486 (10%)

Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
           ++P   TF  ++K    +  +++   IHA V+  G+ ++  +   LI  Y   + +S AR
Sbjct: 51  SLPSHSTFVQLLKKRPSLTQIKQ---IHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFAR 107

Query: 192 KVFDEMPERN-VVSWTAMIVGYASVGDLVEAKTVFDLM---------------------- 228
            VFD+ P     + W  MI  Y+      E+  +F  M                      
Sbjct: 108 IVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACS 167

Query: 229 --------------------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT 268
                                E      N+L+        +  A+++FDEMP+R+V+++T
Sbjct: 168 RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWT 227

Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQ 327
           +++ GYA  G++  AR LF+  P R+ V+W+ +++GY  +   +EA++ F+DM C   V+
Sbjct: 228 SVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVK 287

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           P+E +LVS++SAC+ +G LD   W+  Y+ ++ + LS +++  AL+DM AKCG +D A  
Sbjct: 288 PNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLS-SNISTALIDMYAKCGRIDCARR 346

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F+ +  RD++++ SMI GLS+HG G + +  F  ML+EG  PD++    VL  CSH GL
Sbjct: 347 VFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGL 406

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           VE+G   F  M  ++ IVP  EHY C++DLLGR G L+SA+E + SMP+EP   AW ALL
Sbjct: 407 VEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALL 466

Query: 508 GACKLYSDIELGELVANRLFELEP-QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
            AC+++ D++LGE + N + EL P  + G YVLLSN+YA+  +W  V  VR  M +RG  
Sbjct: 467 SACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSE 526

Query: 567 KIPGCS 572
             PGCS
Sbjct: 527 GCPGCS 532



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 235/469 (50%), Gaps = 70/469 (14%)

Query: 1   MPKIDEP---NTPCKHKS--CSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQ 55
           +P++ EP    +P  + S   SS +   S ++  + P  S  +    L+KK    T + Q
Sbjct: 17  IPRLQEPFYVQSPLVYISSNTSSAIWEPSGTSSFSLPSHSTFVQ---LLKKRPSLTQIKQ 73

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSL--ATPLSYSTAVFNRIVN-PNTFLWNTLLKGYS 112
           +H+ ++  GL Q+ SL+   I   HS      LS++  VF++  + P T +WN +++ YS
Sbjct: 74  IHAQVVTHGLAQNTSLLGPLI---HSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYS 130

Query: 113 QNSRFIEVFTIFVRLIR--EEAVPDKYTFPLVIKACSHVLSVRE-GTAIHAAVIRWGVDE 169
           +     E   +F +++        DKYTF  V  ACS   ++R  G  +H  V++ G + 
Sbjct: 131 KTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYES 190

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D+FVG SL+++Y     +  A++VFDEMP+R+V++WT+++ GYA  G+LV A+ +FD+MP
Sbjct: 191 DIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMP 250

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEM-------PERNVVS---------------- 266
            R++VSW  ++ G V       A Q F++M       P   V+                 
Sbjct: 251 GRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGK 310

Query: 267 -----------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
                             T +ID YAK G +  AR +F+    RD++ W+++ISG + +G
Sbjct: 311 WIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHG 370

Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
              E +  FS+M ++  +PD+  L+ +++ CS  G       V+  LS  H  +    ++
Sbjct: 371 LGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSG------LVEEGLSIFHDMIPLWGIV 424

Query: 370 ------AALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHG 411
                   L+D+  + G ++ A E  ++MP   DVV++ +++    IHG
Sbjct: 425 PKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 179/581 (30%), Positives = 292/581 (50%), Gaps = 56/581 (9%)

Query: 43  LIKKCKLQTHLH---QVHSHIIKKGLEQD---HSLVAHFISLCHSLATPLSYSTAVFNRI 96
           L+K C     L    QVH+  +K GLE D    S +      C SL   L +    F  +
Sbjct: 155 LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF----FYGM 210

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
              N   W + + G  QN +++    +F+ + R      + ++    ++C+ +  +  G 
Sbjct: 211 PERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG----- 211
            +HA  I+     D  VGT+++D+Y K   ++ AR+ F  +P   V +  AM+VG     
Sbjct: 271 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLFMIR 330

Query: 212 ----------------------------------------YASVGDLVEAKTVFDLMPER 231
                                                   Y     L+EA  +F  M ++
Sbjct: 331 SSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQGMKQK 390

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
            +VSWNA+I  L + G        F+EM   +    +T++D Y K G +  A+ L +   
Sbjct: 391 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIG 450

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
            + VV+W+A++SG++ N + + A K FS+M    ++PD F   +++  C+ +  ++L   
Sbjct: 451 GQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQ 510

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
           +   + +  M L   ++ + LVDM AKCG+M  +  +FE +  RD VS+ +MI G ++HG
Sbjct: 511 IHGQIIKQEM-LDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 569

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
            G +A+ +F+RM  E + P+   F  VL ACSHVGL +DG R+F  M   Y + P  EH+
Sbjct: 570 LGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHF 629

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
           ACMVD+LGR+   + A + +NSMP +  A  W  LL  CK+  D+E+ EL A+ +  L+P
Sbjct: 630 ACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDP 689

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ++  Y+LLSN+YA + +W DV   R  +K+  L+K PGCS
Sbjct: 690 DDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCS 730



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 190/422 (45%), Gaps = 56/422 (13%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           +S A  +S + A+F+ + +P+   WN L+ GY Q   F E   +FV + R    PD+ TF
Sbjct: 93  YSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTF 152

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
            +++K+CS +  +  G  +HA  ++ G++ DV  G++L+D+YGK + +  A   F  MPE
Sbjct: 153 AVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL 255
           RN VSW + I G       V    +F  M       S  S+ +       +  L + RQL
Sbjct: 213 RNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQL 272

Query: 256 F-----DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR----------------- 293
                 ++     VV  T ++D YAK   +T AR  F   P+                  
Sbjct: 273 HAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLFMIRS 331

Query: 294 ----DVVAWSALISGYAQN-----GQPDE--AVKIFSDMCSK-------------NVQPD 329
               DVV+ S + S  A+      GQ     A+K   D+  K               Q D
Sbjct: 332 SIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQGMKQKD 391

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
                ++++A  Q G+ D     D+ L  + M    A V + +VDM  KCG +D A +L 
Sbjct: 392 SVSWNAIIAALEQNGHYD-----DTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLH 446

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + +  + VVS+ +++ G S++     A   F  ML  GL PD   F  VL  C+++  +E
Sbjct: 447 DRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIE 506

Query: 450 DG 451
            G
Sbjct: 507 LG 508



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 10/287 (3%)

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           +FD MP R+ VS+ TM+  Y+  GD+++A +LF+  PD DVV+W+AL+SGY Q G   E+
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           V +F +M  + V PD      L+ +CS +  L L   V +   ++ +++      +ALVD
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEID-VRTGSALVD 192

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M  KC ++D A   F  MP R+ VS+ S I G   +    + + LF  M   GL   + +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 435 FTIVLTACSHVGLVEDGWRFF-EAMQNVYA---IVPSPEHYACMVDLLGRTGHLKSAYEL 490
           +     +C+ +  +  G +    A++N ++   +V +      +VD+  +   L  A   
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-----IVDVYAKANSLTDARRA 307

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
              +P     ++   ++G   + S I    +  + +F    +  G +
Sbjct: 308 FFGLPNHTVETSNAMMVGLFMIRSSIRFDVVSLSGVFSACAETKGYF 354



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 176/419 (42%), Gaps = 73/419 (17%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAA----VIRWGVDEDVFVGTSLIDLYGKRKEISC 189
           P + TF  V ++C+   + RE  A   A    ++  G     FV   L+ +Y +    +C
Sbjct: 13  PARVTFSRVFQSCAQ--AGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 70

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
           AR+VFD MP R+ VSW  M+  Y+  GD+  A  +FD MP+   VSWNAL+ G  + G  
Sbjct: 71  ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 130

Query: 250 RSARQLFDEMPER---------------------------------------NVVSYTTM 270
           + +  LF EM  R                                       +V + + +
Sbjct: 131 QESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSAL 190

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           +D Y K   +  A   F   P+R+ V+W + I+G  QN Q    +++F +M    +   +
Sbjct: 191 VDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 250

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
               S   +C+ +  L+    + ++  ++     R  V  A+VD+ AK  ++  A   F 
Sbjct: 251 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFF 309

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            +PN  V +  +M+ GL               M+   +  D V+ + V +AC+       
Sbjct: 310 GLPNHTVETSNAMMVGLF--------------MIRSSIRFDVVSLSGVFSACAET----- 350

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
             + +   Q V+ +         ++DL G+   L  AY +   M  +  + +W A++ A
Sbjct: 351 --KGYFPGQQVHCLAIKS-----VLDLYGKCKALMEAYLIFQGMK-QKDSVSWNAIIAA 401


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 177/565 (31%), Positives = 307/565 (54%), Gaps = 38/565 (6%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS 89
           NFP P  LL                QVH++ ++KG  + +S + + +   +     L+ S
Sbjct: 207 NFPMPEGLLMG-------------KQVHAYGLRKG--ELNSFIINTLVAMYGKMGKLASS 251

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
             +       +   WNT+L    QN +F+E       ++ E   PD +T   V+ ACSH+
Sbjct: 252 KVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHL 311

Query: 150 LSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             +R G  +HA  ++ G +DE+ FVG++L+D+Y   K++    +VFD M +R +  W AM
Sbjct: 312 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAM 371

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQLFDEMPERN 263
           I GYA      EA  +F  M E + +  N+     ++   V+ G       +   + +R 
Sbjct: 372 ITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRG 431

Query: 264 V----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           +         ++D Y+++G +  A+ +F    DRD+V W+ +I+GY  + + ++A+ +  
Sbjct: 432 LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLH 491

Query: 320 DM-----------CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
            M              +++P+   L++++ +C+ +  L     + +Y  ++++    A V
Sbjct: 492 KMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVA-V 550

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
            +ALVDM AKCG +  + ++F+ +P R+V+++  ++    +HG+ + A+ +   M+ +G+
Sbjct: 551 GSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGV 610

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P+EV F  V  ACSH G+V +G + F  M+  Y + PS +HYAC+VDLLGR G +K AY
Sbjct: 611 KPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAY 670

Query: 489 ELLNSMPVE-PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
           +L+N +P     A AW +LLGAC++++++E+GE+ A  L +LEP  A  YVLL+NIY++A
Sbjct: 671 QLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSA 730

Query: 548 DRWLDVCLVRSKMKERGLRKIPGCS 572
             W     VR  MK +G+RK PGCS
Sbjct: 731 GLWYKATEVRRNMKAQGVRKEPGCS 755



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 175/393 (44%), Gaps = 37/393 (9%)

Query: 83  ATPLSYSTAVFNRIVN-PNTFL--------WNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
           ATP S +  V + +   P+ F+        W  LL+   +++   E    ++ +I     
Sbjct: 31  ATPTSVTDDVASTVYGAPSKFISQSHSPEWWIDLLRSKVRSNLLREAVLTYIDMIVLGIK 90

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLYGKRKEISCARK 192
           PD + FP ++KA + +  +  G  IHA V ++G   D V V  +L++LY K  +     K
Sbjct: 91  PDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 150

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----------------SNVSW 236
           VFD + ERN VSW ++I    S      A   F  M +                 SN   
Sbjct: 151 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPM 210

Query: 237 --NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
               L+G  V    LR          E N     T++  Y K+G + S++ L  +   RD
Sbjct: 211 PEGLLMGKQVHAYGLRKG--------ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRD 262

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           +V W+ ++S   QN Q  EA++   +M  + V+PD F + S++ ACS +  L     + +
Sbjct: 263 LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHA 322

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y  ++      + V +ALVDM   C  +     +F+ M +R +  + +MI G + + +  
Sbjct: 323 YALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDE 382

Query: 415 QAVSLFDRM-LSEGLTPDEVAFTIVLTACSHVG 446
           +A+ LF  M  S GL  +      V+ AC   G
Sbjct: 383 EALLLFIEMEESAGLLANSTTMAGVVPACVRSG 415



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 229/513 (44%), Gaps = 34/513 (6%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P NF  P+ LL A+  ++   L     Q+H+H+ K G   D   VA+ +   +       
Sbjct: 91  PDNFAFPA-LLKAVADLQDMDLGK---QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 146

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
               VF+RI   N   WN+L+       ++      F  ++ E+  P  +T   V  ACS
Sbjct: 147 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACS 206

Query: 148 HV---LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           +      +  G  +HA  +R G + + F+  +L+ +YGK  +++ ++ +      R++V+
Sbjct: 207 NFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVT 265

Query: 205 WTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLF---- 256
           W  ++         +EA      M     E    + ++++     +  LR+ ++L     
Sbjct: 266 WNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYAL 325

Query: 257 -DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
            +   + N    + ++D Y     + S   +F+   DR +  W+A+I+GYAQN   +EA+
Sbjct: 326 KNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEAL 385

Query: 316 KIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
            +F +M  S  +  +   +  ++ AC + G       +  ++ +  +D  R  V  AL+D
Sbjct: 386 LLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDR-FVQNALMD 444

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV------SLFDRMLSE-- 426
           M ++ G +D A  +F  M +RD+V++ ++I G         A+       + +R  SE  
Sbjct: 445 MYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERA 504

Query: 427 ---GLTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMVDLLGRTG 482
               L P+ +    +L +C+ +  +  G      A++N  A   +    + +VD+  + G
Sbjct: 505 SRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAKCG 562

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            L+ + ++ + +P+  +   W  ++ A  ++ +
Sbjct: 563 CLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGN 594



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%)

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W  L+    ++    EAV  + DM    ++PD F   +L+ A + + ++DL   + +++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +    +    V   LV++  KCG+     ++F+ +  R+ VS+ S+I  L        A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             F  ML E + P       V  ACS+  + E
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPE 212


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 303/552 (54%), Gaps = 23/552 (4%)

Query: 38  LSALTLIKKC------KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           ++ L +I+ C      +L   LHQ+    IK  L  D  ++   +++ +S    L  S A
Sbjct: 263 VTMLVVIQACAEYGCLRLGMQLHQL---AIKFNLINDLFILNALLNM-YSDNGSLESSWA 318

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +FN +   +  LWN+++  Y       E   +F+++  E    D  T  +++  C+ +  
Sbjct: 319 LFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLND 378

Query: 152 VR-EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
               G  +HA  ++ G++ D ++G +L+ +Y K  +I+ A+ VF++M   +V+SW  MI 
Sbjct: 379 GSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMIS 438

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQL----FDEMPE 261
            +A      +A  +F +M E S + +N+     L+       DL   R +         E
Sbjct: 439 AFAQSMFRAKAFELFLMMCE-SEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLE 497

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            N    T++ + Y   GD  +A ++F   P RD+V+W++LIS Y +N    +A+ +F+ M
Sbjct: 498 INTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM 557

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR-AHVIAALVDMNAKCG 380
            S+ ++P+   +++++++C+Q+ +L L   + +Y +R  + L   A +  A + M A+CG
Sbjct: 558 ISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCG 616

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  A ++F T+  R +VS+ +MI G  +HG GR A   F +ML +G  P+ V+F  VL+
Sbjct: 617 KLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLS 676

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH GL   G + F +M   + I P   HY CMVDLLGR GH   A   +NSMP+EP A
Sbjct: 677 ACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDA 736

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           S W ALL +C++ S+ +L E +  +L ELEP N G+++LLSNIYA A  W +V  +R  +
Sbjct: 737 SIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWL 796

Query: 561 KERGLRKIPGCS 572
           +ERGL K PG S
Sbjct: 797 RERGLGKPPGTS 808



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 180/351 (51%), Gaps = 15/351 (4%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN+++K +++      + + + ++      PD  T PLV+KAC  + ++  G  IH+ + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
              +  DV VGT+L+D Y K   ++ A KVF EMPER++VSW A+I GY       EA  
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 224 VF------DLMPERSNVSWNALIGGLVKIGDLRSARQ-----LFDEMPERNVVSYTTMID 272
           +F       L P    V   AL+    ++ +LR  ++     L + + + +    T ++ 
Sbjct: 148 LFVEMKKAGLTPNSRTVV--ALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y +   + S R +F     R++V+W+A+I+G+   G   +A+K++S M  + ++ D   
Sbjct: 206 FYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVT 264

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           ++ ++ AC++ G L L   +     + ++ ++   ++ AL++M +  G+++ +  LF  +
Sbjct: 265 MLVVIQACAEYGCLRLGMQLHQLAIKFNL-INDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           P  D   + SMI      G   +A++LF +M  E +  D     I+L+ C+
Sbjct: 324 PTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 188/402 (46%), Gaps = 14/402 (3%)

Query: 54  HQVHSHIIKKGL-EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
            ++H + ++ GL + D  +    +         LS+   VF+ ++  N   WN ++ G+ 
Sbjct: 181 QEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR--VFSLMLVRNIVSWNAIITGFL 238

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
                 +   ++  ++ E    D  T  +VI+AC+    +R G  +H   I++ +  D+F
Sbjct: 239 NVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLF 298

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-ER 231
           +  +L+++Y     +  +  +F+ +P  +   W +MI  Y   G   EA  +F  M  ER
Sbjct: 299 ILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLER 358

Query: 232 SNVSWNALIGGLVKIGDLRS----ARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSA 283
                  +   L    DL       R L         E +      ++  Y K   +T+A
Sbjct: 359 IKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAA 418

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +FE     DV++W+ +IS +AQ+    +A ++F  MC   ++ + + +VSL++ C   
Sbjct: 419 QYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDG 478

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            +L     +  +  ++ ++++ + +  +L +M   CG+   A  +F   P RD+VS+ S+
Sbjct: 479 SDLVFGRSIHGFAIKNGLEINTS-LNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSL 537

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
           I     + +  +A+ LF+ M+SE L P+ V    +LT+C+ +
Sbjct: 538 ISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQL 578



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 174/366 (47%), Gaps = 16/366 (4%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           ++ VF  +   +   WN L+ GY     + E   +FV + +    P+  T   ++ AC  
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGE 173

Query: 149 VLSVREGTAIHAAVIRWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
           +L +R G  IH   +R G+ D D +VGT+L+  Y  R +   + +VF  M  RN+VSW A
Sbjct: 174 MLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY-MRFDAVLSHRVFSLMLVRNIVSWNA 232

Query: 208 MIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN 263
           +I G+ +VGD  +A  ++  M     +   V+   +I    + G LR   QL     + N
Sbjct: 233 IITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 264 VVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           +++       +++ Y+  G + S+ +LF A P  D   W+++IS Y   G   EA+ +F 
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFI 352

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNW---VDSYLSRSHMDLSRAHVIAALVDMN 376
            M  + ++ D   +  ++S C+ +   D S W   + ++  +S ++L  A++  AL+ M 
Sbjct: 353 KMRLERIKEDVRTIAIMLSLCNDLN--DGSIWGRGLHAHAMKSGIELD-AYLGNALLSMY 409

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
            K   +  A  +FE M   DV+S+ +MI   +      +A  LF  M    +  +     
Sbjct: 410 VKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIV 469

Query: 437 IVLTAC 442
            +L  C
Sbjct: 470 SLLAFC 475



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T ++D Y K G +  A  +F   P+RD+V+W+ALISGY       EAV +F +M    + 
Sbjct: 99  TALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLT 158

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           P+   +V+L+ AC ++  L L   +  Y  R+ +    A+V  ALV    +   +  +  
Sbjct: 159 PNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV-LSHR 217

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  M  R++VS+ ++I G    G   +A+ L+  ML EG+  D V   +V+ AC+  G 
Sbjct: 218 VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGC 277

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +  G +  + +   + ++        ++++    G L+S++ L N++P    A+ W +++
Sbjct: 278 LRLGMQLHQ-LAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSD-AALWNSMI 335

Query: 508 GA 509
            +
Sbjct: 336 SS 337


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/482 (33%), Positives = 268/482 (55%), Gaps = 45/482 (9%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA--R 191
           P+      +++ CS   +++E   IH  +++ G   +    ++L+  Y + + ++ A  R
Sbjct: 8   PNTEQTQALLERCS---NMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTR 64

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGD-------------------------LVEAKTVFD 226
            VFD +   N V W  M+  Y++  D                         L++A +   
Sbjct: 65  VVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALS 124

Query: 227 LMPERSNV--------------SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
              E   +              + N+L+      G+++SA  LF+++P R++VS+  MID
Sbjct: 125 AFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMID 184

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
           GY K G++  A  +F+A P+++V++W+ +I G+ + G   EA+ +   M    ++PD   
Sbjct: 185 GYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSIT 244

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           L   +SAC+ +G L+   W+ +Y+ ++ + +    +   L DM  KCG M++A  +F  +
Sbjct: 245 LSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPV-LGCVLTDMYVKCGEMEKALLVFSKL 303

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
             + V ++ ++I GL+IHG GR+A+  F +M   G+ P+ + FT +LTACSH GL E+G 
Sbjct: 304 EKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGK 363

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
             FE+M +VY I PS EHY CMVDL+GR G LK A E + SMPV+P+A+ WGALL AC+L
Sbjct: 364 SLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQL 423

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +   ELG+ +   L EL+P ++G Y+ L++IYA A  W  V  VRS++K RGL   PGCS
Sbjct: 424 HKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCS 483

Query: 573 SL 574
           S+
Sbjct: 484 SI 485



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 196/412 (47%), Gaps = 43/412 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHF-ISLCHSLATPLSYSTAVFNRIVNPNT 101
           L+++C     L Q+H  ++KKG  ++   V+   +S        L+Y+  VF+ I +PNT
Sbjct: 16  LLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNT 75

Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
            +WNT+L+ YS ++       ++ +++      + YTFP ++KACS + +  E   IHA 
Sbjct: 76  VIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAH 135

Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           +I+ G   +V+   SL+ +Y     I  A  +F+++P R++VSW  MI GY   G+L  A
Sbjct: 136 IIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMA 195

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM---------------------- 259
             +F  MPE++ +SW  +I G V+IG  + A  L  +M                      
Sbjct: 196 YKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGL 255

Query: 260 ------------PERNVVSY-----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
                        E+N +         + D Y K G+M  A  +F     + V AW+A+I
Sbjct: 256 GALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAII 315

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG-NLDLSNWVDSYLSRSHM 361
            G A +G+  EA+  F+ M    + P+     ++++ACS  G   +  +  +S  S  ++
Sbjct: 316 GGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNI 375

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
             S  H    +VD+  + G +  A E  E+MP + +   + +++    +H H
Sbjct: 376 KPSMEHY-GCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKH 426


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 303/552 (54%), Gaps = 23/552 (4%)

Query: 38  LSALTLIKKC------KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           ++ L +I+ C      +L   LHQ+    IK  L  D  ++   +++ +S    L  S A
Sbjct: 263 VTMLVVIQACAEYGCLRLGMQLHQL---AIKFNLINDLFILNALLNM-YSDNGSLESSWA 318

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +FN +   +  LWN+++  Y       E   +F+++  E    D  T  +++  C+ +  
Sbjct: 319 LFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLND 378

Query: 152 VR-EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
               G  +HA  ++ G++ D ++G +L+ +Y K  +I+ A+ VF++M   +V+SW  MI 
Sbjct: 379 GSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMIS 438

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQL----FDEMPE 261
            +A      +A  +F +M E S + +N+     L+       DL   R +         E
Sbjct: 439 AFAQSMFRAKAFELFLMMCE-SEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLE 497

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            N    T++ + Y   GD  +A ++F   P RD+V+W++LIS Y +N    +A+ +F+ M
Sbjct: 498 INTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM 557

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR-AHVIAALVDMNAKCG 380
            S+ ++P+   +++++++C+Q+ +L L   + +Y +R  + L   A +  A + M A+CG
Sbjct: 558 ISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCG 616

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  A ++F T+  R +VS+ +MI G  +HG GR A   F +ML +G  P+ V+F  VL+
Sbjct: 617 KLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLS 676

Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
           ACSH GL   G + F +M   + I P   HY CMVDLLGR GH   A   +NSMP+EP A
Sbjct: 677 ACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDA 736

Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
           S W ALL +C++ S+ +L E +  +L ELEP N G+++LLSNIYA A  W +V  +R  +
Sbjct: 737 SIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWL 796

Query: 561 KERGLRKIPGCS 572
           +ERGL K PG S
Sbjct: 797 RERGLGKPPGTS 808



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 180/351 (51%), Gaps = 15/351 (4%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN+++K +++      + + + ++      PD  T PLV+KAC  + ++  G  IH+ + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
              +  DV VGT+L+D Y K   ++ A KVF EMPER++VSW A+I GY       EA  
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 224 VF------DLMPERSNVSWNALIGGLVKIGDLRSARQ-----LFDEMPERNVVSYTTMID 272
           +F       L P    V   AL+    ++ +LR  ++     L + + + +    T ++ 
Sbjct: 148 LFVEMKKAGLTPNSRTVV--ALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            Y +   + S R +F     R++V+W+A+I+G+   G   +A+K++S M  + ++ D   
Sbjct: 206 FYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVT 264

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
           ++ ++ AC++ G L L   +     + ++ ++   ++ AL++M +  G+++ +  LF  +
Sbjct: 265 MLVVIQACAEYGCLRLGMQLHQLAIKFNL-INDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
           P  D   + SMI      G   +A++LF +M  E +  D     I+L+ C+
Sbjct: 324 PTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 188/402 (46%), Gaps = 14/402 (3%)

Query: 54  HQVHSHIIKKGL-EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
            ++H + ++ GL + D  +    +         LS+   VF+ ++  N   WN ++ G+ 
Sbjct: 181 QEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR--VFSLMLVRNIVSWNAIITGFL 238

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
                 +   ++  ++ E    D  T  +VI+AC+    +R G  +H   I++ +  D+F
Sbjct: 239 NVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLF 298

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-ER 231
           +  +L+++Y     +  +  +F+ +P  +   W +MI  Y   G   EA  +F  M  ER
Sbjct: 299 ILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLER 358

Query: 232 SNVSWNALIGGLVKIGDLRS----ARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSA 283
                  +   L    DL       R L         E +      ++  Y K   +T+A
Sbjct: 359 IKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAA 418

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
           + +FE     DV++W+ +IS +AQ+    +A ++F  MC   ++ + + +VSL++ C   
Sbjct: 419 QYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDG 478

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            +L     +  +  ++ ++++ + +  +L +M   CG+   A  +F   P RD+VS+ S+
Sbjct: 479 SDLVFGRSIHGFAIKNGLEINTS-LNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSL 537

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
           I     + +  +A+ LF+ M+SE L P+ V    +LT+C+ +
Sbjct: 538 ISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQL 578



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 168/351 (47%), Gaps = 16/351 (4%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN L+ GY     + E   +FV + +    P+  T   ++ AC  +L +R G  IH   +
Sbjct: 129 WNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCL 188

Query: 164 RWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           R G+ D D +VGT+L+  Y  R +   + +VF  M  RN+VSW A+I G+ +VGD  +A 
Sbjct: 189 RNGLFDMDAYVGTALVGFY-MRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKAL 247

Query: 223 TVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMIDGY 274
            ++  M     +   V+   +I    + G LR   QL     + N+++       +++ Y
Sbjct: 248 KLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMY 307

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
           +  G + S+ +LF A P  D   W+++IS Y   G   EA+ +F  M  + ++ D   + 
Sbjct: 308 SDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIA 367

Query: 335 SLMSACSQVGNLDLSNW---VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            ++S C+ +   D S W   + ++  +S ++L  A++  AL+ M  K   +  A  +FE 
Sbjct: 368 IMLSLCNDLN--DGSIWGRGLHAHAMKSGIELD-AYLGNALLSMYVKHNQITAAQYVFEK 424

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           M   DV+S+ +MI   +      +A  LF  M    +  +      +L  C
Sbjct: 425 MRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 124/242 (51%), Gaps = 3/242 (1%)

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           T ++D Y K G +  A  +F   P+RD+V+W+ALISGY       EAV +F +M    + 
Sbjct: 99  TALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLT 158

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           P+   +V+L+ AC ++  L L   +  Y  R+ +    A+V  ALV    +   +  +  
Sbjct: 159 PNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV-LSHR 217

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           +F  M  R++VS+ ++I G    G   +A+ L+  ML EG+  D V   +V+ AC+  G 
Sbjct: 218 VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGC 277

Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           +  G +  + +   + ++        ++++    G L+S++ L N++P    A+ W +++
Sbjct: 278 LRLGMQLHQ-LAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSD-AALWNSMI 335

Query: 508 GA 509
            +
Sbjct: 336 SS 337


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/568 (31%), Positives = 310/568 (54%), Gaps = 23/568 (4%)

Query: 28  PINF-------PKPSCLLSAL-----TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHF 75
           P+NF         P+  LS L     ++++K K    L Q+H+ II  GL  + + +++ 
Sbjct: 3   PVNFNFYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHN-TFLSNS 61

Query: 76  ISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
           +   +     L+ +  +F+     N   W  L+ G ++N  F+E   +F  +I     P+
Sbjct: 62  LMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPN 121

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
             T   V+ A +++  +R   ++H   +R G + +VFV T+L+D+Y K   +  AR++F+
Sbjct: 122 AVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFE 181

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRS 251
            M ERNVV+W A++ GY+  G   EA  +F+LM  +  +    +  +LI   + +G L+ 
Sbjct: 182 SMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQV 241

Query: 252 ARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
              +   +     E +    T ++D Y     +  A  +F     +DV AW+ +++G++ 
Sbjct: 242 GTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSS 301

Query: 308 NGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
               D A+K F+ M   +N++ D   L+ ++S+CS  G L     V +   ++    +  
Sbjct: 302 GRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCF-ANNI 360

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            V +A++DM A CGN++ A   F  M  +DVV + +MI G  ++G+G  A+ LF +M   
Sbjct: 361 FVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGS 420

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
           GL PDE  F  VL ACSH G+V +G + F  M     ++P+ +HYAC++D+LGR G L +
Sbjct: 421 GLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDA 480

Query: 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546
           AY  +N+MP +P    +  LLGAC+++ +I+LG  ++ ++FE+EP +AG YVLLSN+YA 
Sbjct: 481 AYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYAL 540

Query: 547 ADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           A  W  V + R+ ++ + ++K PG SS+
Sbjct: 541 AGNWEGVKMTRASLRSKRMKKDPGFSSI 568


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 191/610 (31%), Positives = 302/610 (49%), Gaps = 85/610 (13%)

Query: 43  LIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           +++ C     LH   Q+H  I   G  +D  ++   I + ++    L  +  +F+++  P
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQM-YADCDHLFSAQRLFDKMPQP 59

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N + W  +   Y ++  + +    +  +   + +PD Y FP V++AC+ +L    G  IH
Sbjct: 60  NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIH 119

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG--- 216
             VI  G + ++ V  SLID+Y K      AR VF+EM ER++ SW +MI GY S G   
Sbjct: 120 KDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLAD 179

Query: 217 ----------------DLV----------------EAKTVFDLMPERSNVSWNALIGGLV 244
                           D+V                EA  V   + + + +SW  LI    
Sbjct: 180 LAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYS 239

Query: 245 KIGDLRSARQLFDEMPERNVVS---------------------------YTTMIDG---- 273
           KIG+   + ++F +M  R VVS                           Y T ++     
Sbjct: 240 KIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVF 299

Query: 274 -----------YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
                      YAK G +  A ++FE     D+V W+A+I G+ +     +A++ F +M 
Sbjct: 300 YSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQ 359

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
             +++ D+  + +++  C    +L   N + +Y+ +S    S   V  A++ M  KCG +
Sbjct: 360 RMDIKNDQTTISTILPVC----DLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCV 415

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
             A  +F +MPN+DVVS+ +MI G  +HGHG+ A+ L   M+  G+ P+   FT VL+AC
Sbjct: 416 RSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSAC 475

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           SH GLV++G+R F +M   Y+I P  EHY+C+VD+L R G    A   ++ MP+EP  S 
Sbjct: 476 SHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSI 535

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562
           WGALL AC+ Y +++ G L A +L  +EP+ AG YV LSNIYA A RW D   VR +++ 
Sbjct: 536 WGALLAACRAYQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEG 595

Query: 563 RGLRKIPGCS 572
           +GL K  G S
Sbjct: 596 KGLVKPSGQS 605


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 291/530 (54%), Gaps = 29/530 (5%)

Query: 43  LIKKCKLQTHLH---QVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNR 95
           +IK C + + L+    +H   +  G   +    +SL+A +++        +  +  VFN 
Sbjct: 190 VIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMN-----CGKVGLARQVFNV 244

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
           ++  +   WNT++ G+ QN R  E   +F  ++     PD  T    + +C H+  +  G
Sbjct: 245 MLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELG 304

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             +H  V +  + E + V  +L+D+Y +   +  A  VF E  E++V++WT+MI GY   
Sbjct: 305 IKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMN 364

Query: 216 GDLVEAKTVFDLMPER-------SNVSWNALIGGLVKIGDLRSARQL----FDEMPERNV 264
           G+   AK+   L P         + V+  +L+     +  L+  + L      +  + +V
Sbjct: 365 GN---AKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDV 421

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +  T +ID YAK   ++ +  +F     +  V W+AL+SG   N    EAV +F  M  +
Sbjct: 422 LVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIE 481

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            V+ +     S++ A + + +L     + SYL RS   +S+  VI  L+DM +KCG++D 
Sbjct: 482 EVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGF-ISKIAVITGLIDMYSKCGSLDY 540

Query: 385 AAELFETMPNR--DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           A ++F+ +PN+  D++ +  +I G  +HGHG  AV LF++M+  G+ P+E+ FT VL AC
Sbjct: 541 AHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHAC 600

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
           SH GLV+DG   F+ M   Y   P P HY C+VDLLGR G L  AY+L+ SMP + + S 
Sbjct: 601 SHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSI 660

Query: 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552
           WGALLGAC ++ ++ELGE+ A RLFELEP++ G+Y+LL+NIYA   RW D
Sbjct: 661 WGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKD 710



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 232/503 (46%), Gaps = 54/503 (10%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV------FNRIVNPNTFLWNTLLK 109
           +H H I  GL        +FI L   LA   ++   V      F+ + +P+ FLWN ++K
Sbjct: 101 LHGHTITSGLLHS----PNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIK 156

Query: 110 GYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            Y       +   +F  +I   +  PDKYTFPLVIKACS +  +  G  IH   +  G  
Sbjct: 157 MYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFS 216

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-L 227
            ++FV  SL+ +Y    ++  AR+VF+ M +R+VVSW  MI G+   G   EA  VF+ +
Sbjct: 217 SNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSM 276

Query: 228 MPERSNVSWNALIGGL------------VKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
           M  R       ++  L            +K+  L     L +++  RN      ++D Y+
Sbjct: 277 MDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRN-----ALVDMYS 331

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           + G M  A  +F    ++DV+ W+++I+GY  NG    A+ +   M    V P+   L S
Sbjct: 332 RCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLAS 391

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           L+SAC+ +  L     + +++ R  +D S   V+ AL+DM AKC  +  + ++F     +
Sbjct: 392 LLSACASLCCLKQGKSLHAWVMRKKLD-SDVLVVTALIDMYAKCNAVSYSFQVFAKTSMK 450

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------H 444
             V + +++ GL  +   R+AV LF  ML E +  +   F  V+ A +           H
Sbjct: 451 RTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLH 510

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAW 503
             LV  G+     +  +  I         ++D+  + G L  A+++ + +P  E     W
Sbjct: 511 SYLVRSGF-----ISKIAVITG-------LIDMYSKCGSLDYAHKIFDEIPNKEKDIIVW 558

Query: 504 GALLGACKLYSDIELGELVANRL 526
             L+    ++   E   L+ N++
Sbjct: 559 SVLIAGYGMHGHGETAVLLFNQM 581


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/537 (32%), Positives = 303/537 (56%), Gaps = 31/537 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++HSHI+  G  Q H  V   +   +S       +  VF+++   +   WN+++  + ++
Sbjct: 49  KLHSHILLTGF-QAHVFVQTALVDVYSKCCCFHSARLVFDQMPIKSLVSWNSIISAHCRD 107

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               + F I  ++          TF   + +CS    + +G +IH  + + G+D  + + 
Sbjct: 108 FHIDQSFGILKQMQLLGLELSSATFTGFLASCS----LPQGLSIHGYITKLGLDLHLPLA 163

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
            S++ +Y +  +I  A  VF  + ++++VSWT ++ GY S GD+ +   VF+ M      
Sbjct: 164 NSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVG 223

Query: 229 PER---------SNVSWNALIGGLVKIGDLRSARQLFDEM-PERNVVSYTTMIDGYAKVG 278
           P+            +S N L+  LV    L+S    FD   P  N+     ++  YAK  
Sbjct: 224 PDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSG---FDHKDPIDNL-----LVAMYAKCK 275

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D+ SAR +F+A  ++ V  W+++ISGYAQ G P+EA+ +F+ +     +P+E  L +++S
Sbjct: 276 DLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLS 335

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           AC+++G+L +   ++ Y+  + +  S   V  +L+ M  KCG++ +A  LFE +PN+D+ 
Sbjct: 336 ACAEMGSLRMGEEIEQYILLNGLG-SDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLA 394

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
            + +MI G ++HG G++A++LF +M +E G+ PD + +T VL ACSH GL+EDG ++F +
Sbjct: 395 VWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRS 454

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           MQ  + I PS +HY+C+VDLLGR G+++ A   +  MPV   A  W   L AC  + ++E
Sbjct: 455 MQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPVLVQARVWAPFLSACYTHHNLE 514

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LGE  A  LF+LEP++ G++VL++N+Y +  +W +    RS +  RGL K PG S +
Sbjct: 515 LGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAKARSIINARGLVKEPGWSQI 571



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 186/386 (48%), Gaps = 27/386 (6%)

Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
           ++TFP V+KAC+ + S+ + T +H+ ++  G    VFV T+L+D+Y K      AR VFD
Sbjct: 28  EFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSARLVFD 87

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGL-----VKI 246
           +MP +++VSW ++I  +     + ++  +   M     E S+ ++   +        + I
Sbjct: 88  QMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCSLPQGLSI 147

Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
               +   L   +P  N     +++  Y ++  +  A S+F     + +V+W+ ++ GY 
Sbjct: 148 HGYITKLGLDLHLPLAN-----SIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYL 202

Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
             G   +   +F+ M  + V PD  + V+L+S C   GNL L+  V S L +S  D  + 
Sbjct: 203 SAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFD-HKD 261

Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
            +   LV M AKC ++  A  +F+ +  + V  + SMI G +  G+  +A+ LF+ +L  
Sbjct: 262 PIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRT 321

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDG-----WRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
              P+E+    VL+AC+ +G +  G     +     + +   +  S  H  C      + 
Sbjct: 322 ASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFC------KC 375

Query: 482 GHLKSAYELLNSMPVEPHASAWGALL 507
           G +K A  L   +P +  A  W A++
Sbjct: 376 GSIKKAQALFERIPNKDLA-VWSAMI 400


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/570 (31%), Positives = 293/570 (51%), Gaps = 32/570 (5%)

Query: 13  HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL- 71
           H + +++LP C+ + P                     Q  + QVH+  +K G + +  L 
Sbjct: 147 HVTFTTLLPGCNDAVP---------------------QNAVGQVHAFAVKLGFDTNPFLT 185

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131
           V++ +   +     L  +  +F  I   ++  +NTL+ GY ++  + E   +F+++ +  
Sbjct: 186 VSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245

Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
             P  +TF  V+KA   +     G  +HA  +  G   D  VG  ++D Y K   +   R
Sbjct: 246 HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIG 247
            +FDEMPE + VS+  +I  Y+       +   F  M     +R N  +  ++     + 
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS 365

Query: 248 DLRSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            L+  RQL  +       S      +++D YAK      A  +F++ P R  V+W+ALIS
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           GY Q G     +K+F+ M   N++ D+    +++ A +   +L L   + +++ RS  +L
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-NL 484

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
                 + LVDM AKCG++  A ++FE MP+R+ VS+ ++I   + +G G  A+  F +M
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
           +  GL PD V+   VLTACSH G VE G  +F+AM  +Y I P  +HYACM+DLLGR G 
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP-QNAGSYVLLSN 542
              A +L++ MP EP    W ++L AC+++ +  L E  A +LF +E  ++A +YV +SN
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSN 664

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           IYA A  W  V  V+  M+ERG++K+P  S
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYS 694



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 211/453 (46%), Gaps = 37/453 (8%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA--VPDKY 137
           H     +S +  +F+ + +     W  L+  Y++NS F E F +F ++ R  +  +PD  
Sbjct: 89  HVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHV 148

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS--LIDLYGKRKEISCARKVFD 195
           TF  ++  C+  +       +HA  ++ G D + F+  S  L+  Y + + +  A  +F+
Sbjct: 149 TFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFE 208

Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRS 251
           E+PE++ V++  +I GY   G   E+  +F  M +     S+ +++ ++  +V + D   
Sbjct: 209 EIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFAL 268

Query: 252 ARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            +QL          R+      ++D Y+K   +   R LF+  P+ D V+++ +IS Y+Q
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
             Q + ++  F +M         F   +++S  + + +L +   +      +  D S  H
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD-SILH 387

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
           V  +LVDM AKC   + A  +F+++P R  VS+ ++I G    G     + LF +M    
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447

Query: 428 LTPDEVAFTIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           L  D+  F  VL A +           H  ++  G      ++NV++        + +VD
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-----NLENVFS-------GSGLVD 495

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +  + G +K A ++   MP + +A +W AL+ A
Sbjct: 496 MYAKCGSIKDAVQVFEEMP-DRNAVSWNALISA 527



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           KT FD    RSN     ++  L++ G + +AR+++DEMP +N VS  TMI G+ K GD++
Sbjct: 41  KTGFDTDTCRSNF----IVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVS 96

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC--SKNVQPDEFILVSLMSA 339
           SAR LF+A PDR VV W+ L+  YA+N   DEA K+F  MC  S    PD     +L+  
Sbjct: 97  SARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPG 156

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVV 398
           C+     +    V ++  +   D +    ++  L+    +   +D A  LFE +P +D V
Sbjct: 157 CNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSV 216

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           ++ ++I G    G   +++ LF +M   G  P +  F+ VL A   VGL
Sbjct: 217 TFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGL 263



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 169/396 (42%), Gaps = 48/396 (12%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           + A +I+ G D D      +++   +R ++S ARKV+DEMP +N VS   MI G+   GD
Sbjct: 35  VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV------VSYTTMI 271
           +  A+ +FD MP+R+ V+W  L+G   +      A +LF +M   +       V++TT++
Sbjct: 95  VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154

Query: 272 DG-------------------------------------YAKVGDMTSARSLFEAAPDRD 294
            G                                     Y +V  +  A  LFE  P++D
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            V ++ LI+GY ++G   E++ +F  M     QP +F    ++ A   + +  L   + +
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
            LS +      A V   ++D  +K   +     LF+ MP  D VSY  +I   S      
Sbjct: 275 -LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYE 333

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-C 473
            ++  F  M   G       F  +L+  +++  ++ G +     Q + A   S  H    
Sbjct: 334 ASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH--CQALLATADSILHVGNS 391

Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +VD+  +    + A  +  S+P     S W AL+  
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALISG 426


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/535 (31%), Positives = 299/535 (55%), Gaps = 25/535 (4%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  ++K G   D  ++   + + ++ A  L  +  VF+R+   N   W ++L G  QN
Sbjct: 144 RLHCDVVKAG-GADGFVMNSLVDM-YAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQN 201

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  + ++   P +YT   V+ AC+ +  + +G  IH +VI++G+  + F+ 
Sbjct: 202 GIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFIS 261

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
            SL+D+Y K +++  AR+VFDE+   ++V WTAMIVGY       + K   D +    + 
Sbjct: 262 ASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGY------TQNKRPLDALQLFLHK 315

Query: 235 SWNALIGGLVKIGDLRSARQLFDEMP---------------ERNVVSYTTMIDGYAKVGD 279
            + +++   V I  + SA      +P               E +VV    ++D YAK   
Sbjct: 316 KFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVR-NALVDMYAKCQA 374

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  A S+F     +DVVAW+++++GY++NG  +E++ +F+ M  + + PD   +V+ +SA
Sbjct: 375 LPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSA 434

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C  + +L +     +Y  + +  +S  +V  AL+++ +KC ++  A  +F  M +R+ V+
Sbjct: 435 CVCLADLHIGKGFHTYAIK-YAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVT 493

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + +MI G  + G    ++ LF+ ML E + P+EV FT +L+ACSH G+V  G  +F++M 
Sbjct: 494 WSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMA 553

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             + I PS +HYACMVD++ R G+L+ A E + +MP++   S WG+ L  CKL+S +E G
Sbjct: 554 RHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFG 613

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           E    ++  L P+    YVL+SN+Y +  RW     +R  M+E+GL K+PGCSS+
Sbjct: 614 EEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSV 668



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 41/280 (14%)

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER--- 262
           T ++  YA++GDL  A+ V D  P     ++  ++G LV  G    A  L  +M  R   
Sbjct: 59  TKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPA 118

Query: 263 -----------------------------NVVS--------YTTMIDGYAKVGDMTSARS 285
                                        +VV           +++D YAK GD+ +AR 
Sbjct: 119 AAQADVVLSLALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKAGDLENARK 178

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F+  P+R+VV+W++++SG  QNG  +E + +F++M   NV P E+ +VS+++AC+ +G 
Sbjct: 179 VFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGG 238

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L    W+   + +  +  + + + A+L+DM AKC  ++ A  +F+ +   D+V + +MI 
Sbjct: 239 LHQGRWIHGSVIKYGLS-TNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIV 297

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
           G + +     A+ LF       + P+ V    V++A + +
Sbjct: 298 GYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQL 337



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 23/272 (8%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERN------VVSYTTMIDGYAKVGDMTSARSLFEAA 290
           +AL+  L   G LRS R L   +          + + T ++  YA +GD+ SAR + +  
Sbjct: 22  SALVLLLPACGTLRSLRALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARGVLDGT 81

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFSDM---CSKNVQPDEFILVSLMSACSQVGNLD 347
           P  D  A+  ++      G   +AV +  DM   C    Q D  + ++L  AC +  +  
Sbjct: 82  PRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSLAL-KACVRSADF- 139

Query: 348 LSNWVDSYLSRSHMDLSRA-----HVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
                  Y  R H D+ +A      V+ +LVDM AK G+++ A ++F+ +P R+VVS+ S
Sbjct: 140 ------RYGRRLHCDVVKAGGADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTS 193

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           M+ G   +G   + + LF+ M  + + P E     VL AC+ +G +  G R+       Y
Sbjct: 194 MLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQG-RWIHGSVIKY 252

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
            +  +    A ++D+  +   ++ A  + + +
Sbjct: 253 GLSTNSFISASLLDMYAKCEKVEDARRVFDEL 284


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/578 (32%), Positives = 309/578 (53%), Gaps = 51/578 (8%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNR 95
            L++  K + + +  Q+H  IIK    +D    +SLV HF + C  L      +  VF+ 
Sbjct: 139 GLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLV-HFYAECGELDC----ARKVFDE 193

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVRE 154
           +   N   W +++ GY++     +   +F R++R+E  +P+  T   VI AC+ +  +  
Sbjct: 194 MSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET 253

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  ++  +   G++ +  + ++L+D+Y K   I  A+++FDE    N+    AM   Y  
Sbjct: 254 GEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVR 313

Query: 215 VGDLVEAKTVFDLM------PER-------------SNVSW------------------- 236
            G   EA  V +LM      P+R              N+ W                   
Sbjct: 314 QGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 373

Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NALI   +K     +A ++FD M  + VV++ +++ GY + G++ +A   F   P++++
Sbjct: 374 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNI 433

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDS 354
           V+W+ +IS   Q    +EA+++F  M S+  V  D   ++S+ SAC  +G LDL+ W+  
Sbjct: 434 VSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYY 493

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+ ++ + L    +   LVDM ++CG+ + A  +F ++ NRDV ++ + I  +++ G+  
Sbjct: 494 YIEKNRIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVE 552

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ LF+ M+ +GL PD V F   LTAC H GLV+ G   F +M+ ++ + P   HY CM
Sbjct: 553 RAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCM 612

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G L+ A +L+  MP EP+   W +LL AC++  ++E+    A ++  L P+  
Sbjct: 613 VDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERT 672

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           GSYVLLSN+YA+A RW D+  VR  MKE+GLRK PG S
Sbjct: 673 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTS 710



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 151/532 (28%), Positives = 255/532 (47%), Gaps = 53/532 (9%)

Query: 44  IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT--PLSYSTAVFNRIVNPNT 101
           +K CK    L   H  + K+GL+ D S +   ++    L T   LS++  VF    +  T
Sbjct: 38  LKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGT 97

Query: 102 -FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            F++N+L++GY+ +    E   +F+R++     PDKYTFP  +  C+       G  IH 
Sbjct: 98  CFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHG 157

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            +I+    +D+FV  SL+  Y +  E+ CARKVFDEM ERNVVSWT+MI GYA      +
Sbjct: 158 LIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKD 217

Query: 221 AKTVF-------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTT 269
           A  +F       D++P  ++V+   +I    K+ DL +  +++D +     E N +  + 
Sbjct: 218 AVDLFFRMVRDEDVIP--NSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISA 275

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++D Y K   +  A+ LF+     ++   +A+ S Y + G   EA+ + + M    ++PD
Sbjct: 276 LVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPD 335

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC---------- 379
              ++S +S+CSQ+ N+        Y+ R+  + S  ++  AL+DM  KC          
Sbjct: 336 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFE-SWDNICNALIDMYMKCHRQDTAFRIF 394

Query: 380 ---------------------GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
                                G +D A E F TMP +++VS+ ++I  L       +A+ 
Sbjct: 395 DRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIE 454

Query: 419 LFDRMLS-EGLTPDEVAFTIVLTACSHVGLVE-DGWRFFEAMQNVYAIVPSPEHYACMVD 476
           +F  M S E +  D V    + +AC H+G ++   W ++   +N   I         +VD
Sbjct: 455 VFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKN--RIQLDVRLGTTLVD 512

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
           +  R G  +SA  + NS+      SAW A +GA  +  ++E    + N + E
Sbjct: 513 MFSRCGDPESAMSIFNSL-TNRDVSAWTAAIGAMAMAGNVERAIELFNEMIE 563



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 200/447 (44%), Gaps = 49/447 (10%)

Query: 36  CLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           C++SA   ++   L+T   +V+  I   G+E +  +++  + + +     +  +  +F+ 
Sbjct: 240 CVISACAKLED--LETG-EKVYDFIRDSGIEVNDLMISALVDM-YMKCNAIDIAKRLFDE 295

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
               N  L N +   Y +     E   +   ++     PD+ +    I +CS + ++  G
Sbjct: 296 YGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWG 355

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
            + H  V+R G +    +  +LID+Y K      A ++FD M  + VV+W +++ GY   
Sbjct: 356 KSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIEN 415

Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-------- 267
           G++  A   F+ MPE++ VSWN +I  LV+      A ++F  M  +  V+         
Sbjct: 416 GEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSI 475

Query: 268 --------------------------------TTMIDGYAKVGDMTSARSLFEAAPDRDV 295
                                           TT++D +++ GD  SA S+F +  +RDV
Sbjct: 476 ASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 535

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
            AW+A I   A  G  + A+++F++M  + ++PD  + +  ++AC   G +     + + 
Sbjct: 536 SAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNS 595

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR--DVVSYCSMIKGLSIHGHG 413
           + + H           +VD+  + G ++ A +L + MP    DV+ + S++    + G+ 
Sbjct: 596 MEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVI-WNSLLAACRVQGNV 654

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLT 440
             A    +++  + L P+     ++L+
Sbjct: 655 EMAAFAAEKI--QVLAPERTGSYVLLS 679


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 276/502 (54%), Gaps = 46/502 (9%)

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ-NSRFIEVFTIFVRLIRE 130
           +A F+  C      L  +  VF ++    T  WNT+L GY++   +  E   +F ++   
Sbjct: 80  IASFVRAC-----DLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE- 133

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
              PD  ++ +++     V  +R                           YG    +  A
Sbjct: 134 ---PDSVSYNIML-----VCYLRS--------------------------YG----VEAA 155

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
              F++MP +++ SW  +I G+A  G + +A  +F +MPE++ VSW+A+I G V+ GDL 
Sbjct: 156 LAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLE 215

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +A +L+  +  ++VV  T M+ GY K G +  A  +F+    +++V W+++I+GY +N +
Sbjct: 216 AAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCR 275

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            ++ +K+F  M    V+P+   L S++  CS +  L L   +   +S+S +         
Sbjct: 276 AEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT-ACT 334

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +L+ M  KCG++D A +LF  MP +DV+S+ +MI G + HG GR+A+ LFD+M +  + P
Sbjct: 335 SLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKP 394

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           D + F  V+ AC+H G V+ G ++F++M+  + I   P HY C++DLLGR G L  A  L
Sbjct: 395 DWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  MP +PHA+ +G LLGAC+++ +++L E  A  L  L+P +A  YV L+NIYA  ++W
Sbjct: 455 IKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
             V  VR  MKE  + KIPG S
Sbjct: 515 DQVAKVRKMMKEHNVVKIPGYS 536



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 159/313 (50%), Gaps = 18/313 (5%)

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRSARQLFDEM 259
           +VVS    I  +    DL  A+ VF+ M  R+ V+WN ++ G  K+ G ++ A +LFD++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PE + VSY  M+  Y +   + +A + F   P +D+ +W+ LISG+AQNGQ  +A  +FS
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M  KN         +++S   + G+L+ +  +       ++ +    V  A++    K 
Sbjct: 192 VMPEKN----GVSWSAMISGYVEHGDLEAAEEL-----YKNVGMKSVVVETAMLTGYMKF 242

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G ++ A  +F+ M  +++V++ SMI G   +      + +F  M+   + P+ ++ + VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYAC--MVDLLGRTGHLKSAYELLNSMPV 496
             CS++  +  G      M  + +  P S +  AC  ++ +  + G L SA++L   MP 
Sbjct: 303 LGCSNLSALPLG----RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 497 EPHASAWGALLGA 509
           +   S W A++  
Sbjct: 359 KDVIS-WNAMISG 370



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 178/363 (49%), Gaps = 19/363 (5%)

Query: 58  SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +H +   + +  S+  + + +C+  +  +  + A FN++   +   WNTL+ G++QN + 
Sbjct: 124 AHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQM 183

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            + F +F  +  +  V    ++  +I        +     ++  V   G+ + V V T++
Sbjct: 184 QKAFDLFSVMPEKNGV----SWSAMISGYVEHGDLEAAEELYKNV---GM-KSVVVETAM 235

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSN- 233
           +  Y K  ++  A ++F  M  +N+V+W +MI GY       +   VF  M E   R N 
Sbjct: 236 LTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNP 295

Query: 234 VSWNALIGGLVKIGDL---RSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           +S ++++ G   +  L   R   QL  + P  ++  + T++I  Y K GD+ SA  LF  
Sbjct: 296 LSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLE 355

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            P +DV++W+A+ISGYAQ+G   +A+ +F  M +  ++PD    V+++ AC+  G +DL 
Sbjct: 356 MPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLG 415

Query: 350 -NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGL 407
             +  S      ++    H    ++D+  + G +D A  L + MP +     Y +++   
Sbjct: 416 VQYFKSMKKEFGIEAKPVHY-TCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGAC 474

Query: 408 SIH 410
            IH
Sbjct: 475 RIH 477


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/549 (32%), Positives = 294/549 (53%), Gaps = 10/549 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    ++SALT            ++H+ ++K         V + +   ++    +  +  
Sbjct: 282 PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAER 341

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +  ++ N +   WN+L+KGY QN  + E    F  +I      D+ +   +I A   + +
Sbjct: 342 ILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSN 401

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA VI+ G D ++ VG +LID+Y K        + F  M +++++SWT +I G
Sbjct: 402 LLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAG 461

Query: 212 YASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------N 263
           YA     VEA  +F D+  +R  +    ++G +++   +  +  +  E+          +
Sbjct: 462 YAQNDCHVEALELFRDVAKKRMEID-EMILGSILRASSVLKSMLIVKEIHCHILRKGLLD 520

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
            V    ++D Y K  +M  A  +FE+   +DVV+W+++IS  A NG   EAV++F  M  
Sbjct: 521 TVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVE 580

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             +  D   L+ ++SA + +  L+    +  YL R    L    +  A+VDM A CG++ 
Sbjct: 581 TGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLE-GSIAVAVVDMYACCGDLQ 639

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F+ +  + ++ Y SMI    +HG G+ AV LFD+M  E ++PD ++F  +L ACS
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+++G  F + M++ Y + P PEHY C+VD+LGR   +  A+E +  M  EP A  W
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVW 759

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALL AC+ +S+ E+GE+ A RL ELEP+N G+ VL+SN++A   RW DV  VR+KMK  
Sbjct: 760 CALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKAS 819

Query: 564 GLRKIPGCS 572
           G+ K PGCS
Sbjct: 820 GMEKHPGCS 828



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 193/414 (46%), Gaps = 13/414 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L L  K +  +   Q+HS I K     +   +A  +   +     L  +  VF+ + +  
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRT 146

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIH 159
            F WNT++  Y  N        ++  + R E VP    +FP ++KAC+ +  +R G+ +H
Sbjct: 147 AFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDL 218
           + +++ G     F+  +L+ +Y K  ++S AR++FD   E+ + V W +++  Y++ G  
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKS 265

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT---------T 269
           +E   +F  M        +  I   +   D  S  +L  E+    + S T          
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNA 325

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y + G M  A  +     + DVV W++LI GY QN    EA++ FSDM +   + D
Sbjct: 326 LIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSD 385

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           E  + S+++A  ++ NL     + +Y+ +   D S   V   L+DM +KC         F
Sbjct: 386 EVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLIDMYSKCNLTCYMGRAF 444

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
             M ++D++S+ ++I G + +    +A+ LF  +  + +  DE+    +L A S
Sbjct: 445 LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 173/350 (49%), Gaps = 21/350 (6%)

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYG 182
           F RL   E       F  V++ C    +V +G  +H+ + + +   E  F+   L+ +YG
Sbjct: 68  FQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYG 127

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV---SWNA 238
           K   +  A KVFDEMP+R   +W  MI  Y S G+   A  ++ ++  E   +   S+ A
Sbjct: 128 KCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPA 187

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDMTSARSLFEAAPDR- 293
           L+    K+ D+RS  +L   + +    S   +++     YAK  D+++AR LF+   ++ 
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D V W++++S Y+ +G+  E +++F +M      P+ + +VS ++AC       L   + 
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           + + +S    S  +V  AL+ M  +CG M +A  +   M N DVV++ S+IKG   +   
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMY 367

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVEDGW 452
           ++A+  F  M++ G   DEV+ T ++ A             H  +++ GW
Sbjct: 368 KEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 417


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/570 (31%), Positives = 300/570 (52%), Gaps = 44/570 (7%)

Query: 4   IDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKK 63
           + +PN      + +  +P+  R    +      ++S   ++     Q  LH+  + + + 
Sbjct: 39  VQDPNRRIAELAAAGRVPDARR--LFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRP 96

Query: 64  GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTI 123
              ++       +S  ++ A  +  + A+F+R+   N   WNT+L+ Y+   R      +
Sbjct: 97  DARRNVVTWTALLS-GYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACAL 155

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183
           F  +     V D  ++ +++ A      VR GT          +DE              
Sbjct: 156 FDGM----PVRDAGSWNILLAAL-----VRSGT----------MDE-------------- 182

Query: 184 RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGL 243
                 AR++F+ MPERNV+SWT MI G A  G   EA+ +FD MPER+ VSWNA+I G 
Sbjct: 183 ------ARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGY 236

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            +   +  A  LF  MPER+V S+  MI G+ +  D+  A+ LF+  P R+VV+W+ +++
Sbjct: 237 ARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMN 296

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           G  Q  + + A+++F+ M    ++P++   +  + A S +  L     V   + ++    
Sbjct: 297 GCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQF 356

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
               + ++L+ + AKCG +  A ++F+    +DV+S+  MI   + HG G +A++L+++M
Sbjct: 357 DN-FIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKM 415

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
                 P++V +  +L+ACSH GLV++G R FE M    +I    EHY+C++DL  R G 
Sbjct: 416 QENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGR 475

Query: 484 LKSAYELLNSMPVEPHASA-WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542
           L  A  L+N + ++P +S  W ALLG C  + +  +G+L A  L E EP NAG+Y LLSN
Sbjct: 476 LDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSN 535

Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           IYA+A +W +   +RS+M +RGL+K PGCS
Sbjct: 536 IYASAGKWKEAAKIRSEMNDRGLKKQPGCS 565



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 211/428 (49%), Gaps = 66/428 (15%)

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
           +ST  F+ + +PN  +      G   ++R         RL       D  ++  ++ A +
Sbjct: 31  FSTDAFSHVQDPNRRIAELAAAGRVPDAR---------RLFDRTPDRDVVSWTAMVAAYA 81

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
               + E +A+   + R     +V   T+L+  Y + + +  AR +FD MPERNVVSW  
Sbjct: 82  RQGQLHEASAL---LHRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNT 138

Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           M+  YAS G +  A  +FD MP R   SWN L+  LV+ G +  AR+LF+ MPERNV+S+
Sbjct: 139 MLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSW 198

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           TTMI G A+ G    AR+LF+  P+R+VV+W+A+ISGYA+N + DEA+ +F +M  ++V 
Sbjct: 199 TTMISGLARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVA 258

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
               ++         + N DL                                   +A E
Sbjct: 259 SWNIMITGF------IQNKDLK----------------------------------KAQE 278

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
           LF+ MP R+VVS+ +M+ G         A+ +F+ ML +G+ P++V F   + A S++  
Sbjct: 279 LFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAG 338

Query: 448 VEDGWRFFEAMQNVYAIV-PSPEHY-----ACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           + +G       Q V+ ++  +P  +     + ++ L  + G ++ A ++ + +  E    
Sbjct: 339 LSEG-------QQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFD-LSGEKDVI 390

Query: 502 AWGALLGA 509
           +W  ++ A
Sbjct: 391 SWNGMIAA 398


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 294/542 (54%), Gaps = 13/542 (2%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           ++K C       ++H    K G + +  + A  I + +S       + ++F+ +   +  
Sbjct: 224 VLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHM-YSRFGFTGIARSLFDDMPFRDMG 282

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            WN ++ G  QN    +   +   +  E    +  T   ++  C  +  +     IH  V
Sbjct: 283 SWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I+ G++ D+FV  +LI++Y K   +  ARK F +M   +VVSW ++I  Y    D V A 
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 223 TVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDG 273
             F  M     +   ++  +L   + +  D +++R +   +  R     +VV    ++D 
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFI 332
           YAK+G + SA  +FE    +DV++W+ LI+GYAQNG   EA++++  M   K + P++  
Sbjct: 463 YAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGT 522

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
            VS++ A + VG L     +   + ++++ L    V   L+D+  KCG +  A  LF  +
Sbjct: 523 WVSILPAYAHVGALQQGMRIHGRVIKTNLHLD-VFVATCLIDVYGKCGRLVDAMSLFYQV 581

Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
           P    V++ ++I    IHGH  + + LF  ML EG+ PD V F  +L+ACSH G VE+G 
Sbjct: 582 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 641

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
             F  MQ  Y I PS +HY CMVDLLGR G+L+ AY  +  MP++P AS WGALLGAC++
Sbjct: 642 WCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRI 700

Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + +IELG+  ++RLFE++ +N G YVLLSNIYA   +W  V  VRS  +ERGL+K PG S
Sbjct: 701 HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 760

Query: 573 SL 574
           ++
Sbjct: 761 TI 762



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 236/475 (49%), Gaps = 22/475 (4%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+ ++  G  Q   +    ++L  +L   +S S   F++I   + + WN+++  Y  N 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGD-VSLSRCTFDQIPQKDVYTWNSMISAYVHNG 196

Query: 116 RFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            F E    F +L+   E  PD YTFP V+KAC    ++ +G  IH    + G   +VFV 
Sbjct: 197 HFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRRIHCWAFKLGFQWNVFVA 253

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            SLI +Y +      AR +FD+MP R++ SW AMI G    G+  +A  V D M     +
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 231 RSNVSWNALIGGLVKIGDLRSAR----QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSL 286
            + V+  +++    ++GD+ +A      +     E ++     +I+ YAK G++  AR  
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F+     DVV+W+++I+ Y QN  P  A   F  M     QPD   LVSL S  +Q  + 
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
             S  V  ++ R    +    +  A+VDM AK G +D A ++FE +  +DV+S+ ++I G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITG 493

Query: 407 LSIHGHGRQAVSLFDRMLSE--GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM--QNVY 462
            + +G   +A+ ++ +M+ E   + P++  +  +L A +HVG ++ G R    +   N++
Sbjct: 494 YAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLH 552

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
             V       C++D+ G+ G L  A  L   +P E   + W A++    ++   E
Sbjct: 553 LDVFVA---TCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAE 603



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 135/283 (47%), Gaps = 12/283 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L+S  +++ + +   +   VH  I+++G   +  ++ + +   ++    L  +  
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE--EAVPDKYTFPLVIKACSHV 149
           VF  I+  +   WNTL+ GY+QN    E   ++ +++ E  E +P++ T+  ++ A +HV
Sbjct: 475 VFEIILVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
            ++++G  IH  VI+  +  DVFV T LID+YGK   +  A  +F ++P+ + V+W A+I
Sbjct: 534 GALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII 593

Query: 210 VGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNV- 264
             +   G   +   +F  M +      +V++ +L+      G +   +  F  M E  + 
Sbjct: 594 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIK 653

Query: 265 ---VSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALIS 303
                Y  M+D   + G +  A    +  P   D   W AL+ 
Sbjct: 654 PSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLG 696


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 283/535 (52%), Gaps = 26/535 (4%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            Q+H++  K G   ++ +    ++L   C  + T L Y    F      N  LWN +L  
Sbjct: 369 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY----FLETEVENVVLWNVMLVA 424

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           Y         F IF ++  EE VP++YT+P ++K C  +  +  G  IH+ +I+     +
Sbjct: 425 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 484

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            +V + LID+Y K  ++  A  +      ++VVSWT MI GY       +A T F  M +
Sbjct: 485 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 544

Query: 231 RS----NVSWNALIGGLVKIGDLRSARQLF---------DEMPERNVVSYTTMIDGYAKV 277
           R      V     +     +  L+  +Q+           ++P +N      ++  Y++ 
Sbjct: 545 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN-----ALVTLYSRC 599

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G +  +   FE     D +AW+AL+SG+ Q+G  +EA+++F  M  + +  + F   S +
Sbjct: 600 GKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAV 659

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
            A S+  N+     V + ++++  D S   V  AL+ M AKCG++  A + F  +  ++ 
Sbjct: 660 KAASETANMKQGKQVHAVITKTGYD-SETEVCNALISMYAKCGSISDAEKQFLEVSTKNE 718

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ ++I   S HG G +A+  FD+M+   + P+ V    VL+ACSH+GLV+ G  +FE+
Sbjct: 719 VSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFES 778

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M + Y + P PEHY C+VD+L R G L  A E +  MP++P A  W  LL AC ++ ++E
Sbjct: 779 MNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNME 838

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +GE  A+ L ELEP+++ +YVLLSN+YA + +W    L R KMKE+G++K PG S
Sbjct: 839 IGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQS 893



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 213/457 (46%), Gaps = 47/457 (10%)

Query: 134 PDKYTFPLVIKACSHVL-SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           P+  T   +++ C     S+ EG  +H+ +++ G+D +  +   L D Y  + ++  A K
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 101

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVS--WNALIGGLV 244
           VFDEMPER + +W  MI   AS   + E   +F      ++ P     S    A  GG V
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161

Query: 245 KIGDLRS--ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
               +    AR L+  + +  VV    +ID Y++ G +  AR +F+    +D  +W A+I
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 220

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SG ++N    EA+++F DM    + P  +   S++SAC ++ +L++   +   + +    
Sbjct: 221 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 280

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            S  +V  ALV +    GN+  A  +F  M  RD V+Y ++I GLS  G+G +A+ LF R
Sbjct: 281 -SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 339

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE---------------AMQNVYAIVPS 467
           M  +GL PD      ++ ACS  G +  G +                  A+ N+YA    
Sbjct: 340 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 468 PEH---------------YACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALLGA 509
            E                +  M+   G    L++++ +   M +E   P+   + ++L  
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 459

Query: 510 CKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYA 545
           C    D+ELGE + +++ +   Q NA    +L ++YA
Sbjct: 460 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 496



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 216/452 (47%), Gaps = 24/452 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++HS I+K GL+ +  L        +     L  +  VF+ +     F WN ++K  +  
Sbjct: 66  KLHSQILKLGLDSNGCLSEKLFDF-YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASR 124

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC---SHVLSVREGTAIHAAVIRWGVDEDV 171
           +   EVF +FVR++ E   P++ TF  V++AC   S    V E   IHA ++  G+ +  
Sbjct: 125 NLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVE--QIHARILYQGLRDST 182

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------ 225
            V   LIDLY +   +  AR+VFD +  ++  SW AMI G +      EA  +F      
Sbjct: 183 VVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL 242

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMT 281
            +MP  +  ++++++    KI  L    QL   + +    S T     ++  Y  +G++ 
Sbjct: 243 GIMP--TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLI 300

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SA  +F     RD V ++ LI+G +Q G  ++A+++F  M    ++PD   L SL+ ACS
Sbjct: 301 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 360

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
             G L     + +Y ++     S   +  AL+++ AKC +++ A + F      +VV + 
Sbjct: 361 ADGTLFRGQQLHAYTTKLGF-ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 419

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            M+    +    R +  +F +M  E + P++  +  +L  C  +G +E G +    +   
Sbjct: 420 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 479

Query: 462 YAIVPSPEHYAC--MVDLLGRTGHLKSAYELL 491
              + +   Y C  ++D+  + G L +A+++L
Sbjct: 480 NFQLNA---YVCSVLIDMYAKLGKLDTAWDIL 508



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 218/467 (46%), Gaps = 16/467 (3%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           + Q+H+ I+ +GL +D ++V + +   +S    +  +  VF+ +   +   W  ++ G S
Sbjct: 166 VEQIHARILYQGL-RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 224

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           +N    E   +F  +     +P  Y F  V+ AC  + S+  G  +H  V++ G   D +
Sbjct: 225 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 284

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM---- 228
           V  +L+ LY     +  A  +F  M +R+ V++  +I G +  G   +A  +F  M    
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 344

Query: 229 --PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS 282
             P+ + ++  +L+      G L   +QL     +    S       +++ YAK  D+ +
Sbjct: 345 LEPDSNTLA--SLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 402

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A   F      +VV W+ ++  Y        + +IF  M  + + P+++   S++  C +
Sbjct: 403 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 462

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G+L+L   + S + +++  L+ A+V + L+DM AK G +D A ++      +DVVS+ +
Sbjct: 463 LGDLELGEQIHSQIIKTNFQLN-AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 521

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G + +    +A++ F +ML  G+  DEV  T  ++AC+ +  +++G +   A   V 
Sbjct: 522 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVS 580

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                      +V L  R G ++ +Y          +  AW AL+  
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSG 626



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 224/492 (45%), Gaps = 24/492 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P    S L+  KK +      Q+H  ++K G   D  +    +SL   L   +S +  
Sbjct: 246 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLIS-AEH 304

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +   +NTL+ G SQ     +   +F R+  +   PD  T   ++ ACS   +
Sbjct: 305 IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGT 364

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA   + G   +  +  +L++LY K  +I  A   F E    NVV W  M+V 
Sbjct: 365 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 424

Query: 212 YASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLFDEMPERN--VV 265
           Y  + DL  +  +F  M     V    ++ +++   +++GDL    Q+  ++ + N  + 
Sbjct: 425 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 484

Query: 266 SY--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +Y  + +ID YAK+G + +A  +      +DVV+W+ +I+GY Q    D+A+  F  M  
Sbjct: 485 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 544

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + ++ DE  L + +SAC+ +  L     + +    S    S      ALV + ++CG ++
Sbjct: 545 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS-SDLPFQNALVTLYSRCGKIE 603

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            +   FE     D +++ +++ G    G+  +A+ +F RM  EG+  +   F   + A S
Sbjct: 604 ESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS 663

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPS----PEHYAC--MVDLLGRTGHLKSAYELLNSMPVE 497
               ++ G       + V+A++       E   C  ++ +  + G +  A +    +  +
Sbjct: 664 ETANMKQG-------KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 716

Query: 498 PHASAWGALLGA 509
              S W A++ A
Sbjct: 717 NEVS-WNAIINA 727


>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 604

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/460 (37%), Positives = 262/460 (56%), Gaps = 37/460 (8%)

Query: 149 VLSVREGTAIHAAVIRWG-VDEDVFVGTSLIDLY-------GKRKEIS------------ 188
            LS+   TA+HA  +R G +  D+ +  SL+ +Y         R+ I+            
Sbjct: 100 ALSLPAATALHALAVRAGHLPADLRLANSLLSIYLSLGAASSARRLIADIPRPDTVTWNT 159

Query: 189 ------------CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
                        AR++FD+MP R++VS+ +M+  YA+VGD+  A  +FD MPER  V+W
Sbjct: 160 LLRACLRSGLLPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAGAGRLFDEMPERDVVTW 219

Query: 237 NALIGGLVKIG-DLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
           N ++ G  + G D+ SAR +FD MPER+VVS+ +M+DGYA+ GD+  A ++F+  P R  
Sbjct: 220 NTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSA 279

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQVGNLDLSNWVDS 354
            +W+ +++ YA+     E +++F  M +  V  P+E   VS+++AC  +G+L+   WV  
Sbjct: 280 ASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHG 339

Query: 355 YLSRSHMD--LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
            L R   D  +    ++ AL+ M AKCG M+ A E+F++M  R V S+ SMI G  +HG 
Sbjct: 340 -LVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQ 398

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
             +A+ LF  M   G  P+E  F  VL++C+H GLV +GW  F+ M   Y   P  EH+ 
Sbjct: 399 SEKALELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHFG 458

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           CM+DLLGR G LK +  L+ ++  +   + WG ++ A +  ++ +LGE V  +L E++P 
Sbjct: 459 CMMDLLGRAGLLKDSENLIQNLQGKASPALWGIMMSASQTQNNYKLGEFVGKKLIEMKPA 518

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             G Y+LLSNIYA+  RW DV  VR  MKE G  K  G S
Sbjct: 519 EFGPYLLLSNIYASEGRWGDVEKVREVMKENGAEKYVGLS 558


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/549 (32%), Positives = 294/549 (53%), Gaps = 10/549 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    ++SALT            ++H+ ++K         V + +   ++    +  +  
Sbjct: 282 PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAER 341

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +  ++ N +   WN+L+KGY QN  + E    F  +I      D+ +   +I A   + +
Sbjct: 342 ILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSN 401

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA VI+ G D ++ VG +LID+Y K        + F  M +++++SWT +I G
Sbjct: 402 LLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAG 461

Query: 212 YASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------N 263
           YA     VEA  +F D+  +R  +    ++G +++   +  +  +  E+          +
Sbjct: 462 YAQNDCHVEALELFRDVAKKRMEID-EMILGSILRASSVLKSMLIVKEIHCHILRKGLLD 520

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
            V    ++D Y K  +M  A  +FE+   +DVV+W+++IS  A NG   EAV++F  M  
Sbjct: 521 TVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVE 580

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             +  D   L+ ++SA + +  L+    +  YL R    L    +  A+VDM A CG++ 
Sbjct: 581 TGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCL-EGSIAVAVVDMYACCGDLQ 639

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F+ +  + ++ Y SMI    +HG G+ AV LFD+M  E ++PD ++F  +L ACS
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+++G  F + M++ Y + P PEHY C+VD+LGR   +  A+E +  M  EP A  W
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVW 759

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALL AC+ +S+ E+GE+ A RL ELEP+N G+ VL+SN++A   RW DV  VR+KMK  
Sbjct: 760 CALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKAS 819

Query: 564 GLRKIPGCS 572
           G+ K PGCS
Sbjct: 820 GMEKHPGCS 828



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 193/414 (46%), Gaps = 13/414 (3%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           L L  K +  +   Q+HS I K     +   +A  +   +     L  +  VF+ + +  
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRT 146

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVREGTAIH 159
            F WNT++  Y  N        ++  + R E VP    +FP ++KAC+ +  +R G+ +H
Sbjct: 147 AFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDL 218
           + +++ G     F+  +L+ +Y K  ++S AR++FD   E+ + V W +++  Y++ G  
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKS 265

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT---------T 269
           +E   +F  M        +  I   +   D  S  +L  E+    + S T          
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNA 325

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           +I  Y + G M  A  +     + DVV W++LI GY QN    EA++ FSDM +   + D
Sbjct: 326 LIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSD 385

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           E  + S+++A  ++ NL     + +Y+ +   D S   V   L+DM +KC         F
Sbjct: 386 EVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLIDMYSKCNLTCYMGRAF 444

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
             M ++D++S+ ++I G + +    +A+ LF  +  + +  DE+    +L A S
Sbjct: 445 LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 173/350 (49%), Gaps = 21/350 (6%)

Query: 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYG 182
           F RL   E       F  V++ C    +V +G  +H+ + + +   E  F+   L+ +YG
Sbjct: 68  FQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYG 127

Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV---SWNA 238
           K   +  A KVFDEMP+R   +W  MI  Y S G+   A  ++ ++  E   +   S+ A
Sbjct: 128 KCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPA 187

Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDMTSARSLFEAAPDR- 293
           L+    K+ D+RS  +L   + +    S   +++     YAK  D+++AR LF+   ++ 
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D V W++++S Y+ +G+  E +++F +M      P+ + +VS ++AC       L   + 
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
           + + +S    S  +V  AL+ M  +CG M +A  +   M N DVV++ S+IKG   +   
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMY 367

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVEDGW 452
           ++A+  F  M++ G   DEV+ T ++ A             H  +++ GW
Sbjct: 368 KEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 417


>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
          Length = 704

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 278/477 (58%), Gaps = 6/477 (1%)

Query: 100 NTFLWNTLLKGYSQ--NSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGT 156
           + F W  ++ GY++  N    +   +FV+L+ E+ V P+++T+  V++AC  + ++  G 
Sbjct: 164 DLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGR 223

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           +IH  +I+ G + +  + ++L+DLY +   +  A  V++ +   ++++   +I G+ S+G
Sbjct: 224 SIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMG 283

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
              +AK VF  M E  + S+N +I      G L   R++F+ MP RN+V+  +M+    +
Sbjct: 284 RTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQ 343

Query: 277 VGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
            G +   R LFE   D R+ V W+++ISGY QN Q  EA+K+F+ MC  +++       +
Sbjct: 344 NGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPA 403

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           L+ AC+ +G ++    V + L ++  + S  +V  ALVDM +KCG +  A   F  + + 
Sbjct: 404 LLHACATIGTIEQGKMVHALLCKTPFE-SNGYVGTALVDMYSKCGCVSDARAAFSCIMSP 462

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +V S+ S+I GL+ +GH  +A+  F RML   + P+E+ F  +L A +  GLV  G RFF
Sbjct: 463 NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFF 522

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            +M++ Y +VP+ EHY C VDLLGR   ++ A + ++ MP+      WGALL AC    D
Sbjct: 523 HSMES-YGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMD 581

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +E+GE VA +LF +  ++  +YV +SNIYA   +W DV  VR++++    +K PGCS
Sbjct: 582 LEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAKKEPGCS 638



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 195/441 (44%), Gaps = 41/441 (9%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN  +  +++  R  +      R+ R  A  D+ T+   + AC+    +R G  +H  V+
Sbjct: 35  WNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVV 94

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           + G D+   VG SL+D Y    ++  AR +FD +   N + W+ M+V       L +A  
Sbjct: 95  KSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALD 154

Query: 224 VFDLM-PERSNVSWNALIGGLVKIGD------LRSARQLFDE---MPERNVVSYTTMIDG 273
           +   M P R   +W A+I G  +  +      L    QL  E   MP  N  +Y +++  
Sbjct: 155 LLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMP--NEFTYDSVLRA 212

Query: 274 YAKVGDMTSARS----LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
             K+G +   RS    L ++  + + +  SAL+  Y ++G  D+AV +++ +   ++   
Sbjct: 213 CVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITS 272

Query: 330 EFILVSLMS---------ACSQVGNLDLSNW---VDSYLSRSHMD--------LSRAHVI 369
             ++   +S           SQ+   D  ++   + +Y     ++        + R +++
Sbjct: 273 NTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMV 332

Query: 370 A--ALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426
              +++ +  + G ++   +LFE + + R+ V++ SMI G   +    +A+ LF  M   
Sbjct: 333 TLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRL 392

Query: 427 GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486
            +      F  +L AC+ +G +E G +   A+        +      +VD+  + G +  
Sbjct: 393 SIECSASTFPALLHACATIGTIEQG-KMVHALLCKTPFESNGYVGTALVDMYSKCGCVSD 451

Query: 487 AYELLNSMPVEPHASAWGALL 507
           A    + + + P+ ++W +L+
Sbjct: 452 ARAAFSCI-MSPNVASWTSLI 471



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 145/299 (48%), Gaps = 20/299 (6%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISL-CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +H  +I+ G E +  + +  + L C S A  +  +  V+N +  P+    NTL+ G+   
Sbjct: 225 IHGCLIQSGFESEQLITSALVDLYCRSGA--VDDAVMVYNGLQMPSLITSNTLIAGFISM 282

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            R  +   +F ++       D  ++ L+IKA +    + +   +   + R     ++   
Sbjct: 283 GRTEDAKLVFSQMTEH----DSGSYNLMIKAYADEGRLEDCRRMFEMMPR----RNMVTL 334

Query: 175 TSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLM----P 229
            S++ +  +  ++   RK+F+++  ERN V+W +MI GY       EA  +F +M     
Sbjct: 335 NSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSI 394

Query: 230 ERSNVSWNALIGGLVKIGDLRSARQ---LFDEMP-ERNVVSYTTMIDGYAKVGDMTSARS 285
           E S  ++ AL+     IG +   +    L  + P E N    T ++D Y+K G ++ AR+
Sbjct: 395 ECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARA 454

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            F      +V +W++LI+G AQNG   EA+  F+ M   NV+P+E   + ++ A ++ G
Sbjct: 455 AFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAG 513



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 115/285 (40%), Gaps = 40/285 (14%)

Query: 5   DEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSAL-------TLIKKCKLQTHLHQ-- 55
           DE NT   +   S  + N   S  +      C LS          L+  C     + Q  
Sbjct: 359 DERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGK 418

Query: 56  -VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            VH+ + K   E +  +    + + +S    +S + A F+ I++PN   W +L+ G +QN
Sbjct: 419 MVHALLCKTPFESNGYVGTALVDM-YSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQN 477

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             ++E    F R+++    P++ TF  ++ A +    V +G     ++  +GV   V   
Sbjct: 478 GHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHY 537

Query: 175 TSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           T  +DL G+ + +  A K   +MP   + V W A++       DL   + V         
Sbjct: 538 TCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKV--------- 588

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                             A +LF  M  +++ +Y  M + YAK+G
Sbjct: 589 ------------------AEKLF-YMGTKHISAYVAMSNIYAKLG 614


>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
          Length = 587

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/532 (33%), Positives = 288/532 (54%), Gaps = 11/532 (2%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           H   +H+  I+       + VA  +   ++    +  S   +N    P+  L  +++ GY
Sbjct: 7   HGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGY 66

Query: 112 SQNSRFIEVFTIFVR-LIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            QN    E    F R ++ +  +P   T   VI A + +  V  G A HA VIR   + D
Sbjct: 67  EQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYD 126

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
           + +  +++  Y +   +  AR++F+ M E++VV+W+ M+ GY   GD+ EA T +  M E
Sbjct: 127 LVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVE 186

Query: 231 R----SNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTS 282
                + V+  +++       D+   R++ D       E  +   T ++D Y K      
Sbjct: 187 AGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEE 246

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A  LF     +D VAW+ +ISG+ QNG PDE++++F  M      PD   +V +++ACS+
Sbjct: 247 AMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSE 306

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            G +  +  +  YL  +     +  V AALVD+ +KCGN+  A  +FE+   +DVV + S
Sbjct: 307 SGVMRQAFCLHGYLVITGF-CDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSS 365

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G  +HG G+QAV LF  M++  + P+ + F  VL+ACSH GLV++G R FE+M  VY
Sbjct: 366 MISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQVY 425

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            +VP+  H++ MVDLLGR G L+ A +LL+       A  W ALL AC+ + D E+ E+V
Sbjct: 426 GVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAACRAHHDTEMSEVV 484

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           A +L +L+P +AG Y LL+NIY   + W      R+ +++RGL K+PGCS++
Sbjct: 485 AAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAV 536


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 283/535 (52%), Gaps = 26/535 (4%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISL---CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
            Q+H++  K G   ++ +    ++L   C  + T L Y    F      N  LWN +L  
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY----FLETEVENVVLWNVMLVA 464

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
           Y         F IF ++  EE VP++YT+P ++K C  +  +  G  IH+ +I+     +
Sbjct: 465 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 524

Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            +V + LID+Y K  ++  A  +      ++VVSWT MI GY       +A T F  M +
Sbjct: 525 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 584

Query: 231 RS----NVSWNALIGGLVKIGDLRSARQLF---------DEMPERNVVSYTTMIDGYAKV 277
           R      V     +     +  L+  +Q+           ++P +N      ++  Y++ 
Sbjct: 585 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN-----ALVTLYSRC 639

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           G +  +   FE     D +AW+AL+SG+ Q+G  +EA+++F  M  + +  + F   S +
Sbjct: 640 GKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAV 699

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
            A S+  N+     V + ++++  D S   V  AL+ M AKCG++  A + F  +  ++ 
Sbjct: 700 KAASETANMKQGKQVHAVITKTGYD-SETEVCNALISMYAKCGSISDAEKQFLEVSTKNE 758

Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
           VS+ ++I   S HG G +A+  FD+M+   + P+ V    VL+ACSH+GLV+ G  +FE+
Sbjct: 759 VSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFES 818

Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           M + Y + P PEHY C+VD+L R G L  A E +  MP++P A  W  LL AC ++ ++E
Sbjct: 819 MNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNME 878

Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +GE  A+ L ELEP+++ +YVLLSN+YA + +W    L R KMKE+G++K PG S
Sbjct: 879 IGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQS 933



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 213/457 (46%), Gaps = 47/457 (10%)

Query: 134 PDKYTFPLVIKACSHVL-SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           P+  T   +++ C     S+ EG  +H+ +++ G+D +  +   L D Y  + ++  A K
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVS--WNALIGGLV 244
           VFDEMPER + +W  MI   AS   + E   +F      ++ P     S    A  GG V
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 245 KIGDLRS--ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
               +    AR L+  + +  VV    +ID Y++ G +  AR +F+    +D  +W A+I
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SG ++N    EA+++F DM    + P  +   S++SAC ++ +L++   +   + +    
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            S  +V  ALV +    GN+  A  +F  M  RD V+Y ++I GLS  G+G +A+ LF R
Sbjct: 321 -SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE---------------AMQNVYAIVPS 467
           M  +GL PD      ++ ACS  G +  G +                  A+ N+YA    
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 468 PEH---------------YACMVDLLGRTGHLKSAYELLNSMPVE---PHASAWGALLGA 509
            E                +  M+   G    L++++ +   M +E   P+   + ++L  
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 510 CKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYA 545
           C    D+ELGE + +++ +   Q NA    +L ++YA
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 536



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 216/452 (47%), Gaps = 24/452 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++HS I+K GL+ +  L        +     L  +  VF+ +     F WN ++K  +  
Sbjct: 106 KLHSQILKLGLDSNGCLSEKLFDF-YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASR 164

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC---SHVLSVREGTAIHAAVIRWGVDEDV 171
           +   EVF +FVR++ E   P++ TF  V++AC   S    V E   IHA ++  G+ +  
Sbjct: 165 NLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVE--QIHARILYQGLRDST 222

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------ 225
            V   LIDLY +   +  AR+VFD +  ++  SW AMI G +      EA  +F      
Sbjct: 223 VVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL 282

Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMT 281
            +MP  +  ++++++    KI  L    QL   + +    S T     ++  Y  +G++ 
Sbjct: 283 GIMP--TPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLI 340

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SA  +F     RD V ++ LI+G +Q G  ++A+++F  M    ++PD   L SL+ ACS
Sbjct: 341 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 400

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
             G L     + +Y ++     S   +  AL+++ AKC +++ A + F      +VV + 
Sbjct: 401 ADGTLFRGQQLHAYTTKLGF-ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 459

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
            M+    +    R +  +F +M  E + P++  +  +L  C  +G +E G +    +   
Sbjct: 460 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 519

Query: 462 YAIVPSPEHYAC--MVDLLGRTGHLKSAYELL 491
              + +   Y C  ++D+  + G L +A+++L
Sbjct: 520 NFQLNA---YVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 218/467 (46%), Gaps = 16/467 (3%)

Query: 53  LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYS 112
           + Q+H+ I+ +GL +D ++V + +   +S    +  +  VF+ +   +   W  ++ G S
Sbjct: 206 VEQIHARILYQGL-RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264

Query: 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172
           +N    E   +F  +     +P  Y F  V+ AC  + S+  G  +H  V++ G   D +
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM---- 228
           V  +L+ LY     +  A  +F  M +R+ V++  +I G +  G   +A  +F  M    
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384

Query: 229 --PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS 282
             P+ + ++  +L+      G L   +QL     +    S       +++ YAK  D+ +
Sbjct: 385 LEPDSNTLA--SLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A   F      +VV W+ ++  Y        + +IF  M  + + P+++   S++  C +
Sbjct: 443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +G+L+L   + S + +++  L+ A+V + L+DM AK G +D A ++      +DVVS+ +
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLN-AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           MI G + +    +A++ F +ML  G+  DEV  T  ++AC+ +  +++G +   A   V 
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVS 620

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
                      +V L  R G ++ +Y          +  AW AL+  
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI-AWNALVSG 666



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 224/492 (45%), Gaps = 24/492 (4%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P    S L+  KK +      Q+H  ++K G   D  +    +SL   L   +S +  
Sbjct: 286 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLIS-AEH 344

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   +   +NTL+ G SQ     +   +F R+  +   PD  T   ++ ACS   +
Sbjct: 345 IFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGT 404

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA   + G   +  +  +L++LY K  +I  A   F E    NVV W  M+V 
Sbjct: 405 LFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVA 464

Query: 212 YASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLFDEMPERN--VV 265
           Y  + DL  +  +F  M     V    ++ +++   +++GDL    Q+  ++ + N  + 
Sbjct: 465 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLN 524

Query: 266 SY--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           +Y  + +ID YAK+G + +A  +      +DVV+W+ +I+GY Q    D+A+  F  M  
Sbjct: 525 AYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLD 584

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + ++ DE  L + +SAC+ +  L     + +    S    S      ALV + ++CG ++
Sbjct: 585 RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS-SDLPFQNALVTLYSRCGKIE 643

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            +   FE     D +++ +++ G    G+  +A+ +F RM  EG+  +   F   + A S
Sbjct: 644 ESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS 703

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPS----PEHYAC--MVDLLGRTGHLKSAYELLNSMPVE 497
               ++ G       + V+A++       E   C  ++ +  + G +  A +    +  +
Sbjct: 704 ETANMKQG-------KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK 756

Query: 498 PHASAWGALLGA 509
              S W A++ A
Sbjct: 757 NEVS-WNAIINA 767


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/549 (32%), Positives = 294/549 (53%), Gaps = 10/549 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    ++SALT            ++H+ ++K         V + +   ++    +  +  
Sbjct: 245 PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAER 304

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +  ++ N +   WN+L+KGY QN  + E    F  +I      D+ +   +I A   + +
Sbjct: 305 ILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSN 364

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +HA VI+ G D ++ VG +LID+Y K        + F  M +++++SWT +I G
Sbjct: 365 LLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAG 424

Query: 212 YASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------N 263
           YA     VEA  +F D+  +R  +    ++G +++   +  +  +  E+          +
Sbjct: 425 YAQNDCHVEALELFRDVAKKRMEID-EMILGSILRASSVLKSMLIVKEIHCHILRKGLLD 483

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
            V    ++D Y K  +M  A  +FE+   +DVV+W+++IS  A NG   EAV++F  M  
Sbjct: 484 TVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVE 543

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
             +  D   L+ ++SA + +  L+    +  YL R    L    +  A+VDM A CG++ 
Sbjct: 544 TGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCL-EGSIAVAVVDMYACCGDLQ 602

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F+ +  + ++ Y SMI    +HG G+ AV LFD+M  E ++PD ++F  +L ACS
Sbjct: 603 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 662

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GL+++G  F + M++ Y + P PEHY C+VD+LGR   +  A+E +  M  EP A  W
Sbjct: 663 HAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVW 722

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALL AC+ +S+ E+GE+ A RL ELEP+N G+ VL+SN++A   RW DV  VR+KMK  
Sbjct: 723 CALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKAS 782

Query: 564 GLRKIPGCS 572
           G+ K PGCS
Sbjct: 783 GMEKHPGCS 791



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 175/363 (48%), Gaps = 13/363 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVL 150
           VF+ + +   F WNT++  Y  N        ++  + R E VP    +FP ++KAC+ + 
Sbjct: 101 VFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLR 159

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
            +R G+ +H+ +++ G     F+  +L+ +Y K  ++S AR++FD   E+ + V W +++
Sbjct: 160 DIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSIL 219

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT- 268
             Y++ G  +E   +F  M        +  I   +   D  S  +L  E+    + S T 
Sbjct: 220 SSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH 279

Query: 269 --------TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
                    +I  Y + G M  A  +     + DVV W++LI GY QN    EA++ FSD
Sbjct: 280 SSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSD 339

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M +   + DE  + S+++A  ++ NL     + +Y+ +   D S   V   L+DM +KC 
Sbjct: 340 MIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLIDMYSKCN 398

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
                   F  M ++D++S+ ++I G + +    +A+ LF  +  + +  DE+    +L 
Sbjct: 399 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILR 458

Query: 441 ACS 443
           A S
Sbjct: 459 ASS 461



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 153/296 (51%), Gaps = 21/296 (7%)

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERSNV- 234
           +++L GKR+ +S   KVFDEMP+R   +W  MI  Y S G+   A  ++ ++  E   + 
Sbjct: 86  VLELCGKRRAVS-QEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLG 144

Query: 235 --SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDMTSARSLFE 288
             S+ AL+    K+ D+RS  +L   + +    S   +++     YAK  D+++AR LF+
Sbjct: 145 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 204

Query: 289 AAPDR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
              ++ D V W++++S Y+ +G+  E +++F +M      P+ + +VS ++AC       
Sbjct: 205 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAK 264

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L   + + + +S    S  +V  AL+ M  +CG M +A  +   M N DVV++ S+IKG 
Sbjct: 265 LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGY 324

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVEDGW 452
             +   ++A+  F  M++ G   DEV+ T ++ A             H  +++ GW
Sbjct: 325 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 380


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 285/538 (52%), Gaps = 66/538 (12%)

Query: 40  ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNRIVN 98
           A+ L+        + Q+H+ +   G  +D  LV HF+ ++  S    L Y+  + +R   
Sbjct: 9   AIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEK 68

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR--EEAVPDKYTFPLVIKACSHVLSVREGT 156
           P  F  N++++ + ++    + F  + R++    +  PD YT   +++AC+ +     G 
Sbjct: 69  PTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGL 128

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +H   I                           R+ FD  P       T +I  YA   
Sbjct: 129 QVHGMTI---------------------------RRGFDNDPHVQ----TGLISLYA--- 154

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                                       ++G L S  ++F+ +P  + V  T M+   A+
Sbjct: 155 ----------------------------ELGCLDSCHKVFNSIPCPDFVCRTAMVTACAR 186

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            GD+  AR LFE  P+RD +AW+A+ISGYAQ G+  EA+ +F  M  + V+ +   ++S+
Sbjct: 187 CGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISV 246

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           +SAC+Q+G LD   W  SY+ R+ + ++   +   LVD+ AKCG+M++A E+F  M  ++
Sbjct: 247 LSACTQLGALDQGRWAHSYIERNKIKIT-VRLATTLVDLYAKCGDMEKAMEVFWGMEEKN 305

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
           V ++ S + GL+++G G + + LF  M  +G+TP+ V F  VL  CS VG V++G R F+
Sbjct: 306 VYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365

Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           +M+N + I P  EHY C+VDL  R G L+ A  ++  MP++PHA+ W +LL A ++Y ++
Sbjct: 366 SMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNL 425

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ELG L + ++ ELE  N G+YVLLSNIYA ++ W +V  VR  MK +G+RK PGCS +
Sbjct: 426 ELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVM 483


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 299/564 (53%), Gaps = 34/564 (6%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           P NF  P        L K C   +HL     +H+H++K     D  +    + + +    
Sbjct: 50  PNNFTFP-------FLSKACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDM-YVKCG 101

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            +  +  +F+++   N   WN ++ G+SQ      VF +F+ +      PD  T   + +
Sbjct: 102 KVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTR 161

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNV 202
           A     S+R   A+HA  I  G+D D  V  + I  Y K  E+  A+ VF  + +  R+ 
Sbjct: 162 AVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSS 221

Query: 203 VSWTAMIVGYASVGDLVEAKTVFD------LMPERSNV--------SWNALIGGLVKIGD 248
           VSW ++I  YA  G  V+A   +         P+ S +           ALI G +  G 
Sbjct: 222 VSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHG- 280

Query: 249 LRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
                  F    + ++    T+I  Y++ GD++SA  LF+    R  V+W+A+ISGY++ 
Sbjct: 281 -----HGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEV 335

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           G+ D+A+ +F+ M     +PD   ++SL+S C + G L L +W+D+Y S   +      V
Sbjct: 336 GRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELK-KDVVV 394

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             AL+DM AKCG+++ A E+F ++PNR VVS+ +MI   +++G  R+A+ LF  +   G+
Sbjct: 395 CNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGI 454

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P+ + F  VL AC H G +E G   F  M   Y I P  +HY+CM+DLLGR G L  A 
Sbjct: 455 EPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEAL 514

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E++  MP++P    WGALLGACK+++++E+GE V+  LFEL+P+ A S+V ++NIYA+  
Sbjct: 515 EVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVG 574

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW +V  +R  M+   +RK PG S
Sbjct: 575 RWDEVAAMRKTMRSNQMRKSPGKS 598



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 211/444 (47%), Gaps = 19/444 (4%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN+ ++G        +   +F +L      P+ +TFP + KAC+ +  +     IH  V+
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           +     D++V T+++D+Y K  ++  A  +FD+MP RN+ SW AMI+G++ +G L     
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFN 139

Query: 224 VFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDG 273
           +F  M      P+ + V    L   ++    LR  + +     E  + + T    T I  
Sbjct: 140 LFMGMRLVGTRPDAATVI--GLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAA 197

Query: 274 YAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           Y+K G++  A+ +F       R  V+W++LI+ YA  G+  +AVK +  +     +PD  
Sbjct: 198 YSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAS 257

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            ++SL+S+C Q   L     +  +  +   D S   +I  L+ M ++CG++  A  LF+ 
Sbjct: 258 TIISLLSSCQQPEALIYGFLIHGHGFQLGCD-SDISLINTLISMYSRCGDISSATILFDG 316

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           M  R  VS+ +MI G S  G    A+ LF+ M   G  PD V    +++ C   G +  G
Sbjct: 317 MSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLG 376

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
             + +   +++ +         ++D+  + G L  A E+  S+P     S W A++ AC 
Sbjct: 377 -HWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVS-WTAMIAACA 434

Query: 512 LYSDIELGELVANRLFE--LEPQN 533
           L  +      + + L E  +EP N
Sbjct: 435 LNGEFREALDLFSLLSESGIEPNN 458


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 315/583 (54%), Gaps = 49/583 (8%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           NF  P+       L+K C     L    QVH+++ + GL  D    A  +   +      
Sbjct: 52  NFTFPA-------LLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVD-AYGKCGHA 103

Query: 87  SYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI-------REEAVPDKY 137
            Y+  VF+ +   + +   W  L+  YS N    E F  F R+         E    D  
Sbjct: 104 YYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVV 163

Query: 138 TFPLVIKACSHVLS---VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           +   ++ AC+       +R G+A+H  V+++G      +G S++ +Y   K++  A +VF
Sbjct: 164 SLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVF 223

Query: 195 DEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-------ERSNVSWNALIGGLVK 245
           + +P  +R+VVSW ++I G+   G+   A   F+ M        E + V+  AL+    +
Sbjct: 224 NGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAE 283

Query: 246 IGDLRSARQLFDEMPER--------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           +G + ++  + + +  R        +VV  T ++D +A+ G++  AR +F+    ++VV 
Sbjct: 284 LGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVC 343

Query: 298 WSALISGYAQNGQPDEAVKIF------SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           WSA+I+GY Q   P+EA+++F       +M    V+P+   LVS+++ACS++G    ++ 
Sbjct: 344 WSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASM 403

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM--PNRDVVSYCSMIKGLSI 409
           +  Y   + +D   A + +AL+DM AKCG+++   ++F  M    R VVS+ SMI    I
Sbjct: 404 IHKYAVATGLD-QDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGI 462

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G++A+ LF  M + G  P+E+ +  VL+ACSH GLVE G   F +M+  Y + P+ +
Sbjct: 463 HGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGK 522

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYAC+VDLLGR GHL  A+ ++ +MP++   + WG+LL AC L+ + +LGE+V  ++  L
Sbjct: 523 HYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSL 582

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  + G +VLL+N+Y  A RW DV  +R +++  GLRKIPG S
Sbjct: 583 DSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQS 625



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 236/461 (51%), Gaps = 49/461 (10%)

Query: 96  IVNPNTFLWNTLL-KGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVR 153
           I + +TF WN+L+ K  +QN +     T F R+ +  AVP + +TFP ++KAC+ +  + 
Sbjct: 13  ISHKDTFHWNSLIAKNATQNPQ--TALTFFTRM-QAHAVPSNNFTFPALLKACAALRRLL 69

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--NVVSWTAMIVG 211
               +HA + R G+  D F   +L+D YGK      A +VFDEMPE   +VVSWTA+I  
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIG-GLVKIGDLRSARQL--FDEMPERN----- 263
           Y+S G + EA   F  M        +   G  +V +G L SA  +        R      
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 264 -VVSY---------TTMIDGYAKVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQP 311
            VV Y          +M+  Y+   D+  A  +F   P   RDVV+W++LISG+  NG+ 
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249

Query: 312 DEAVKIFSDMCSKN---VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH- 367
           + A++ F DM S+    V+P+   +++L+ +C+++G ++ S+WV  Y+S  H  L  A  
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 368 --VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V+ AL+DM+A+CGN+  A E+F+ +  ++VV + +MI G        +A+ LF +ML 
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 426 EG------LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA----CMV 475
           EG      + P+ V    V+ ACS +G          +M + YA+    +  A     ++
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SMIHKYAVATGLDQDARIASALI 424

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHA-SAWGALLGACKLYSD 515
           D+  + G ++   ++ + M        +W +++GA  ++ +
Sbjct: 425 DMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 21/268 (7%)

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           +D   W++LI+  A    P  A+  F+ M +  V  + F   +L+ AC+ +  L  +  V
Sbjct: 16  KDTFHWNSLIAKNATQ-NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR--DVVSYCSMIKGLSIH 410
            +YL+R  +   R    AALVD   KCG+   AA++F+ MP    DVVS+ ++I   S +
Sbjct: 75  HAYLTRLGLAADRFSA-AALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133

Query: 411 GHGRQAVSLFDRML-------SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV-- 461
           G   +A   F RM        SE    D V+   +++AC+ VG   +  R   A+  +  
Sbjct: 134 GCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVHGLVV 192

Query: 462 -YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH-ASAWGALLGACKLYSDIE-- 517
            Y    S      MV +      +  A+ + N +P+E     +W +L+    L  + E  
Sbjct: 193 KYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERA 252

Query: 518 ---LGELVANRLFELEPQNAGSYVLLSN 542
                ++V+     +EP       LL +
Sbjct: 253 LRTFEDMVSEGTSAVEPNRVTVIALLKS 280


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/413 (39%), Positives = 248/413 (60%), Gaps = 8/413 (1%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
           + +V    ++I  YGK  ++  A  +FD+M  RN VSW  MI G+A  GD+V A+  F+ 
Sbjct: 20  ERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTFNE 79

Query: 228 MP-ERSNV-SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
           +P E  NV +W  +I G    G++ +AR LF++MP+RN   +++MI GY K+G++  AR+
Sbjct: 80  VPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARA 139

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
           +F+  P R++V W++LI GY+QNG  +EA+  F  M ++  +PDE  +V ++SAC+Q+  
Sbjct: 140 IFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSL 199

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           LD+   V   +    M L+   V+ ALVDM AKCG++  A  +FE M N++   + SMI 
Sbjct: 200 LDVGKDVHKMICAKGMKLNE-FVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMIS 258

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G ++HG  ++A+  F RM      PDE+ F  VL+AC H G VE G   F  M+  Y + 
Sbjct: 259 GFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMER-YGLS 317

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
            S +HY C+VDLLGR G ++ AY L+ SMP++P+ + WGA LGAC+++ D ++ E V   
Sbjct: 318 ASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVED 377

Query: 526 L----FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           +      ++  N   Y LL NIYA +  W     V   M +RGL+K  G SSL
Sbjct: 378 VCTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRSSL 430



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           A+F+R+   N   WN+L+ GYSQN    E    F ++  E   PD+ T   V+ AC+ + 
Sbjct: 139 AIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLS 198

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +  G  +H  +   G+  + FV  +L+D+Y K  +++ AR +F+ M  +N   W +MI 
Sbjct: 199 LLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMIS 258

Query: 211 GYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           G+A  G   EA   F  M E +     +++ +++   V  G +    ++F +M ER  +S
Sbjct: 259 GFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKM-ERYGLS 317

Query: 267 -----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKIFSD 320
                Y  ++D   + G +  A  L ++ P + +   W A +     +   D   ++  D
Sbjct: 318 ASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVED 377

Query: 321 MCSKNVQPD 329
           +C+ +   D
Sbjct: 378 VCTSDSSVD 386



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 2/179 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    ++  L+   +  L      VH  I  KG++ +  +V   + + ++    L+ +  
Sbjct: 182 PDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDM-YAKCGDLTGARL 240

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F R+ N N   WN+++ G++ + +  E    F R+      PD+ TF  V+ AC H   
Sbjct: 241 IFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGF 300

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
           V  G  I + + R+G+   +     L+DL G+   I  A  +   MP + N   W A +
Sbjct: 301 VEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFL 359



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M AKCG++  + +LFE MP R+VV++ +MI G   +G  + A  LFD+M     T + V+
Sbjct: 1   MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKM----STRNAVS 56

Query: 435 FTIVLTACSHVGLVEDGWRFFE----AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           +  ++   +  G +    R F      ++NV         +  M+D     G +++A  L
Sbjct: 57  WIEMIDGFARSGDMVAARRTFNEVPFELKNVVT-------WTVMIDGYASKGEMEAARLL 109

Query: 491 LNSMPVEPHASAWGALL-GACKL 512
              MP + +   W +++ G CK+
Sbjct: 110 FEDMP-QRNFFVWSSMISGYCKI 131


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 287/561 (51%), Gaps = 75/561 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ +  VF  +   +   W  ++ G ++  RF E     + +  +   P ++T   V+ +
Sbjct: 114 LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 173

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE------------------- 186
           C+   +   G  +H+ V++ G+   V V  S++++YGK  +                   
Sbjct: 174 CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSW 233

Query: 187 ------------ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
                       +  A  +F+ MP+R++VSW AMI GY   G   +A  +F  M   S++
Sbjct: 234 NAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 293

Query: 235 S----------------------------------------WNALIGGLVKIGDLRSARQ 254
           +                                         NALI    K G + +AR+
Sbjct: 294 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 353

Query: 255 LFDEMPER--NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + D+  E   NV+S+T +++GY K+GDM SAR +F    +RDVVAW+A+I GY QNG+ D
Sbjct: 354 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 413

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F  M +   +P+ + L +++S C+ +  LD    +     RS ++ S + V  A+
Sbjct: 414 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS-SSVSNAI 472

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           + M A+ G+   A  +F+ +   ++ +++ SMI  L+ HG G +AV LF+ ML  G+ PD
Sbjct: 473 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 532

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + +  VL+ACSH G V +G R+++ ++N + I P   HYACMVDLL R G    A E +
Sbjct: 533 RITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFI 592

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             MPVEP A AWG+LL AC+++ + EL EL A +L  ++P N+G+Y  ++N+Y+   RW 
Sbjct: 593 RRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 652

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D   +    KE+ +RK  G S
Sbjct: 653 DAARIWKARKEKAVRKETGFS 673



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 175/355 (49%), Gaps = 74/355 (20%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLM 228
           +VF   SL+ ++ K   ++ AR VF EMPER+ VSWT M+VG    G   EA KT+ D+ 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 229 PER--------SNV------------------------------SWNALIGGLVKIGDLR 250
            +         +NV                                N+++    K GD  
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +A  +F+ MP R+V S+  M+     +G M  A SLFE+ PDR +V+W+A+I+GY QNG 
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 311 PDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             +A+K+FS M  + ++ PDEF + S++SAC+ +GN+ +   V +Y+ R+ M  + + V 
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN-SQVT 335

Query: 370 AALV----------------------DMN-----------AKCGNMDRAAELFETMPNRD 396
            AL+                      D+N            K G+M+ A E+F  M NRD
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           VV++ +MI G   +G   +A+ LF  M++ G  P+      VL+ C+ +  ++ G
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 47/311 (15%)

Query: 247 GDLRSARQLFDEMP--ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           G LR AR+LFDE+P   RNV ++ +++  +AK G +  AR +F   P+RD V+W+ ++ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR------ 358
             + G+  EA+K   DM +    P +F L +++S+C+      +   V S++ +      
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 359 ------------------------SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
                                     M +       A+V +N   G MD A  LFE+MP+
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWR 453
           R +VS+ +MI G + +G   +A+ LF RML E  + PDE   T VL+AC+++G V  G  
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG-- 316

Query: 454 FFEAMQNVYAIVPSPEH------YACMVDLLGRTGHLKSAYELLN-SMPVEPHASAWGAL 506
                + V+A +   E          ++    ++G +++A  +++ SM  + +  ++ AL
Sbjct: 317 -----KQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371

Query: 507 LGACKLYSDIE 517
           L       D+E
Sbjct: 372 LEGYVKIGDME 382


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 277/525 (52%), Gaps = 41/525 (7%)

Query: 56   VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
            +H+H++  GL +     A  +S  ++    LS +  +F++I N N   W  L    ++  
Sbjct: 825  LHAHLVIIGLARLTYFAAKLMSF-YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRG 883

Query: 116  RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
             + E  + F  + +E   P+++  P ++KAC H+   R G  +H  +++   + D ++ +
Sbjct: 884  FYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIIS 943

Query: 176  SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
            +LI +Y K                                G + +A  VFD + ++  V 
Sbjct: 944  ALIYMYSK-------------------------------CGHVEKACRVFDWIVDKDLVV 972

Query: 236  WNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFE--- 288
             NA++ G  + G +  A  L  +M +     NVVS+ T+I G+++VGD +    +F    
Sbjct: 973  MNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMT 1032

Query: 289  -AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
                + DVV+W+++ISG+ QN    E    F +M  +   P    + SL+ AC+ V NL 
Sbjct: 1033 ANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLR 1092

Query: 348  LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
                +  Y     ++    +V +ALVDM AKCG +  A  LF  MP R+ V++ S+I G 
Sbjct: 1093 HGKEIHGYAMVIGVE-KDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGY 1151

Query: 408  SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
            + HG+  +A+ LF++M       D + FT VL ACSH G+VE G   F  MQ  Y I P 
Sbjct: 1152 ANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPR 1211

Query: 468  PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
             EHYACMVDLLGR G L  AY+L+ +MPVEP    WGALLGAC+ + +IEL E+ A  LF
Sbjct: 1212 LEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLF 1271

Query: 528  ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            ELEP++ GS +LLSN+YA A RW +   ++  MK+R   K PGCS
Sbjct: 1272 ELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCS 1316



 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 167/551 (30%), Positives = 302/551 (54%), Gaps = 11/551 (1%)

Query: 31  FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           FP    + SAL+   +        + H  ++K GL  D  +    I + ++    +  + 
Sbjct: 110 FPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDM-YAKCGEVDSAV 168

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
            V++++ + +    N L+  Y++N  F++ F +F+++      P+ YT+  ++  C  + 
Sbjct: 169 RVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTIS 228

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +++EG  +HA V++     +  VG +L+ LY K   +  A  VF+ + +RN++SWTA I 
Sbjct: 229 AIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASIN 288

Query: 211 GYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           G+   GD  +A   F +M E     +  +++ ++     + D    R    ++ ++ + S
Sbjct: 289 GFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMAS 348

Query: 267 Y----TTMIDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
                T +ID Y+ +G+M  A   F +       V+W+ALI+GY  N + ++A++ F  M
Sbjct: 349 GVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRM 408

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
             ++V  +EF   ++  ACS   +L  +  + S L +S+++ S  HV ++L++   +CG+
Sbjct: 409 VKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVE-SNLHVASSLIEAYTQCGS 467

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           ++ A ++F  + + DVVS+ S+IK  S +G   +A+ L  +M+ EG  P    F  VL+A
Sbjct: 468 LENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSA 527

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH GLV++G  FF++M   Y+I P   H +CMVD+LGR G L++A + +  + ++P AS
Sbjct: 528 CSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTAS 587

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            W  LL AC+  S++++ E VA ++ +LEP +A  YV LSN+YA   RW D    R  M+
Sbjct: 588 IWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLME 647

Query: 562 ERGLRKIPGCS 572
           ++ + K PGCS
Sbjct: 648 QKEISKEPGCS 658


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/583 (32%), Positives = 317/583 (54%), Gaps = 49/583 (8%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           NF  P+       L+K C     L    QVH+++ + GL  D    A  +   +      
Sbjct: 52  NFTFPA-------LLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVD-AYGKCGHA 103

Query: 87  SYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRL--IR-----EEAVPDKY 137
            Y+  VF+ +   + +   W  L+  YS N    E F  F R+  +R     E    D  
Sbjct: 104 YYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVV 163

Query: 138 TFPLVIKACSHVLS---VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           +   ++ AC+       +R G+A+H  V+++G      +G S++ +Y   K++  A +VF
Sbjct: 164 SLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVF 223

Query: 195 DEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-------ERSNVSWNALIGGLVK 245
           + +P  +R+VVSW ++I G+   G+   A   F+ M        E + V+  AL+    +
Sbjct: 224 NGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAE 283

Query: 246 IGDLRSARQLFDEMPER--------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           +G + ++  + + +  R        +VV  T ++D +A+ G++  AR +F+    ++VV 
Sbjct: 284 LGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVC 343

Query: 298 WSALISGYAQNGQPDEAVKIF------SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
           WSA+I+GY Q   P+EA+++F       +M    V+P+   LVS+++ACS++G    ++ 
Sbjct: 344 WSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASM 403

Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM--PNRDVVSYCSMIKGLSI 409
           +  Y   + +D   A + +AL+DM AKCG+++   ++F  M    R VVS+ SMI    I
Sbjct: 404 IHKYAVATGLD-QDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGI 462

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG G++A+ LF  M + G  P+E+ +  VL+ACSH GLVE G   F +M+  Y + P+ +
Sbjct: 463 HGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGK 522

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HYAC+VDLLGR GHL  A+ ++ +MP++   + WG+LL AC L+ + +LGE+V  ++  L
Sbjct: 523 HYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSL 582

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  + G +VLL+N+Y  A RW DV  +R +++  GLRKIPG S
Sbjct: 583 DSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQS 625



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 236/461 (51%), Gaps = 49/461 (10%)

Query: 96  IVNPNTFLWNTLL-KGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVR 153
           I + +TF WN+L+ K  +QN +     T F R+ +  AVP + +TFP ++KAC+ +  + 
Sbjct: 13  ISHKDTFHWNSLIAKNATQNPQ--TALTFFTRM-QAHAVPSNNFTFPALLKACAALRRLL 69

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--NVVSWTAMIVG 211
               +HA + R G+  D F   +L+D YGK      A +VFDEMPE   +VVSWTA+I  
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIG-GLVKIGDLRSARQL--FDEMPERN----- 263
           Y+S G + EA   F  M        +   G  +V +G L SA  +        R      
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 264 -VVSY---------TTMIDGYAKVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQP 311
            VV Y          +M+  Y+   D+  A  +F   P   RDVV+W++LISG+  NG+ 
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 312 DEAVKIFSDMCSKN---VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH- 367
           + A++ F DM S+    V+P+   +++L+ +C+++G ++ S+WV  Y+S  H  L  A  
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 368 --VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
             V+ AL+DM+A+CGN+  A E+F+ +  ++VV + +MI G        +A+ LF +ML 
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 426 EG------LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA----CMV 475
           EG      + P+ V    V+ ACS +G          +M + YA+    +  A     ++
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SMIHKYAVATGLDQDARIASALI 424

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHA-SAWGALLGACKLYSD 515
           D+  + G ++   ++ + M        +W +++GA  ++ +
Sbjct: 425 DMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 21/268 (7%)

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           +D   W++LI+  A    P  A+  F+ M +  V  + F   +L+ AC+ +  L  +  V
Sbjct: 16  KDTFHWNSLIAKNATQ-NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR--DVVSYCSMIKGLSIH 410
            +YL+R  +   R    AALVD   KCG+   AA++F+ MP    DVVS+ ++I   S +
Sbjct: 75  HAYLTRLGLAADRFSA-AALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSN 133

Query: 411 GHGRQAVSLFDRML-------SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV-- 461
           G   +A   F RM        SE    D V+   +++AC+ VG   +  R   A+  +  
Sbjct: 134 GCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA-VGCGSNCLRRGSAVHGLVV 192

Query: 462 -YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH-ASAWGALLGACKLYSDIE-- 517
            Y    S      MV +      +  A+ + N +P+E     +W +L+    L  + E  
Sbjct: 193 KYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERA 252

Query: 518 ---LGELVANRLFELEPQNAGSYVLLSN 542
                ++V+     +EP       LL +
Sbjct: 253 LRTFEDMVSEGTSAVEPNRVTVIALLKS 280


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 287/561 (51%), Gaps = 75/561 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ +  VF  +   +   W  ++ G ++  RF E     + +  +   P ++T   V+ +
Sbjct: 8   LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 67

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE------------------- 186
           C+   +   G  +H+ V++ G+   V V  S++++YGK  +                   
Sbjct: 68  CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSW 127

Query: 187 ------------ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
                       +  A  +F+ MP+R++VSW AMI GY   G   +A  +F  M   S++
Sbjct: 128 NAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 187

Query: 235 S----------------------------------------WNALIGGLVKIGDLRSARQ 254
           +                                         NALI    K G + +AR+
Sbjct: 188 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 247

Query: 255 LFDEMPER--NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + D+  E   NV+S+T +++GY K+GDM SAR +F    +RDVVAW+A+I GY QNG+ D
Sbjct: 248 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 307

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F  M +   +P+ + L +++S C+ +  LD    +     RS ++ S + V  A+
Sbjct: 308 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS-SSVSNAI 366

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           + M A+ G+   A  +F+ +   ++ +++ SMI  L+ HG G +AV LF+ ML  G+ PD
Sbjct: 367 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 426

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + +  VL+ACSH G V +G R+++ ++N + I P   HYACMVDLL R G    A E +
Sbjct: 427 RITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFI 486

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             MPVEP A AWG+LL AC+++ + EL EL A +L  ++P N+G+Y  ++N+Y+   RW 
Sbjct: 487 RRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 546

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D   +    KE+ +RK  G S
Sbjct: 547 DAARIWKARKEKAVRKETGFS 567



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 74/345 (21%)

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLMPER------- 231
           ++ K   ++ AR VF EMPER+ VSWT M+VG    G   EA KT+ D+  +        
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 232 -SNV------------------------------SWNALIGGLVKIGDLRSARQLFDEMP 260
            +NV                                N+++    K GD  +A  +F+ MP
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
            R+V S+  M+     +G M  A SLFE+ PDR +V+W+A+I+GY QNG   +A+K+FS 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 321 MCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV------ 373
           M  + ++ PDEF + S++SAC+ +GN+ +   V +Y+ R+ M  + + V  AL+      
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN-SQVTNALISTYAKS 239

Query: 374 ----------------DMN-----------AKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                           D+N            K G+M+ A E+F  M NRDVV++ +MI G
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              +G   +A+ LF  M++ G  P+      VL+ C+ +  ++ G
Sbjct: 300 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 344



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 45/282 (15%)

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           +AK G +  AR +F   P+RD V+W+ ++ G  + G+  EA+K   DM +    P +F L
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSR------------------------------SHMDL 363
            +++S+C+      +   V S++ +                                M +
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
                  A+V +N   G MD A  LFE+MP+R +VS+ +MI G + +G   +A+ LF RM
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 424 LSE-GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH------YACMVD 476
           L E  + PDE   T VL+AC+++G V  G       + V+A +   E          ++ 
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIG-------KQVHAYILRTEMAYNSQVTNALIS 234

Query: 477 LLGRTGHLKSAYELLN-SMPVEPHASAWGALLGACKLYSDIE 517
              ++G +++A  +++ SM  + +  ++ ALL       D+E
Sbjct: 235 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 276



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M AK G +  A  +F  MP RD VS+  M+ GL+  G   +A+     M ++G TP +  
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 435 FTIVLTAC--SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492
            T VL++C  +  G V      F     + + VP       ++++ G+ G  ++A  +  
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN---SVLNMYGKCGDSETATTVFE 117

Query: 493 SMPVEPHASAWGALLGACKLYSDIELGEL-VANRLFELEPQNA 534
            MPV    S+W A++       +  LG + +A  LFE  P  +
Sbjct: 118 RMPVRS-VSSWNAMVSL-----NTHLGRMDLAESLFESMPDRS 154


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 301/532 (56%), Gaps = 20/532 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H   IK    +D  ++   +++ +S    L  S  +F  + N +  LWN+++  Y+  
Sbjct: 276 QIHQLAIKFEFVEDLYILNALLNM-YSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAF 334

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS-VREGTAIHAAVIRWGVDEDVFV 173
               E   +F+R+  E    D+ T  +++  C  + S + +G ++HA VI+ G+  D  +
Sbjct: 335 GCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASL 394

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           G +L+ +Y +   +   +K+FD M   +++SW  MI+  A      +A  +F+ M E S 
Sbjct: 395 GNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRE-SE 453

Query: 234 VSWNA--LIGGLVKIGDL------RSAR-QLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
           +  N+  +I  L    D+      RS    +     E N    T + D Y   GD  +AR
Sbjct: 454 IKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATAR 513

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            LFE  PDRD+++W+A+I+ Y +N Q  +A+ +F  M S+  +P+   +++++S+ + + 
Sbjct: 514 DLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISE-AEPNSVTIINVLSSFTHLA 572

Query: 345 NLDLSNWVDSYLSRSH----MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
            L     + +Y++R      +DLS A+   A + M A+CG++  A  +F+T+P R+++S+
Sbjct: 573 TLPQGQSLHAYVTRRGFSLGLDLSLAN---AFITMYARCGSLQSAENIFKTLPKRNIISW 629

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
            +MI G  ++G G  A+  F +ML +G  P+ V F  VL+ACSH G +E G + F +M  
Sbjct: 630 NAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQ 689

Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
            + + P   HY+C+VDLL R G +  A E ++SMP+EP AS W ALL +C+ YSD +  +
Sbjct: 690 DFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAK 749

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +  +L +LEP NAG+YVLLSN+YATA  WL+V  +R+ +KE+GLRK PG S
Sbjct: 750 TIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGIS 801



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 230/474 (48%), Gaps = 34/474 (7%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH + ++ G+   +  VA  + +   L   +     +F+ +V  N   WN ++ GY    
Sbjct: 176 VHGYCLRNGMFDSNPHVATAL-IGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVG 234

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            + +   +FV+++ +E   D  T  + ++AC+ + S++ G  IH   I++   ED+++  
Sbjct: 235 DYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILN 294

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP------ 229
           +L+++Y     +  + ++F+ +P R+   W +MI  YA+ G   EA  +F  M       
Sbjct: 295 ALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKK 354

Query: 230 -ERSNVSW----NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
            ER+ V        L  GL+K   L +   +       +      ++  Y ++  + S +
Sbjct: 355 DERTVVIMLSMCEELASGLLKGKSLHA--HVIKSGMRIDASLGNALLSMYTELNCVESVQ 412

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F+     D+++W+ +I   A+N    +A ++F  M    ++P+ + ++S+++AC  V 
Sbjct: 413 KIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVT 472

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
            LD    +  Y+ +  +++++  +  AL DM   CG+   A +LFE  P+RD++S+ +MI
Sbjct: 473 CLDFGRSIHGYVMKHSIEINQP-LRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMI 531

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
                +    +A+ LF RM+SE   P+ V    VL++ +H+  +  G       Q+++A 
Sbjct: 532 ASYVKNNQAHKALLLFHRMISEA-EPNSVTIINVLSSFTHLATLPQG-------QSLHAY 583

Query: 465 VPSPEHYACMVDL---------LGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           V +   ++  +DL           R G L+SA  +  ++P + +  +W A++  
Sbjct: 584 V-TRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAG 635



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 220/460 (47%), Gaps = 47/460 (10%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
           WN+++K  +       + + + ++     +P+  T PLV+KAC+   +V  G +IH ++ 
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
              + +DV VGT+++D Y K   +  AR VFD M +R+VV W AM+ GY   G   EA  
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140

Query: 224 VFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQ-----LFDEMPERNVVSYTTMIDG 273
           +   M  R N+  N     AL+       +LR  R      L + M + N    T +I  
Sbjct: 141 LVREMG-RENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGF 199

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y +  DM     LF+    R++V+W+A+ISGY   G   +A+++F  M    V+ D   +
Sbjct: 200 YLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 258

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +  + AC+++G+L L   +   L+     +   +++ AL++M +  G+++ + +LFE++P
Sbjct: 259 LVAVQACAELGSLKLGKQIHQ-LAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP 317

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS---------- 443
           NRD   + SMI   +  G   +A+ LF RM SEG+  DE    I+L+ C           
Sbjct: 318 NRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGK 377

Query: 444 --HVGLVEDGWRF-----------------FEAMQNVYAIVPSPE--HYACMVDLLGRTG 482
             H  +++ G R                   E++Q ++  +   +   +  M+  L R  
Sbjct: 378 SLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNT 437

Query: 483 HLKSAYELLNSM---PVEPHASAWGALLGACKLYSDIELG 519
               A EL   M    ++P++    ++L AC+  + ++ G
Sbjct: 438 LRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFG 477



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 218/463 (47%), Gaps = 15/463 (3%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ + + +  LWN ++ GY     + E   +   + RE   P+  T   ++ AC     
Sbjct: 110 VFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASE 169

Query: 152 VREGTAIHAAVIRWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           +R G  +H   +R G+ D +  V T+LI  Y  R ++     +FD M  RN+VSW AMI 
Sbjct: 170 LRLGRGVHGYCLRNGMFDSNPHVATALIGFY-LRFDMRVLPLLFDLMVVRNIVSWNAMIS 228

Query: 211 GYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           GY  VGD  +A  +F  M     +   V+    +    ++G L+  +Q+     +   V 
Sbjct: 229 GYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVE 288

Query: 267 ----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
                  +++ Y+  G + S+  LFE+ P+RD   W+++IS YA  G  +EA+ +F  M 
Sbjct: 289 DLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQ 348

Query: 323 SKNVQPDEFILVSLMSACSQVGN-LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
           S+ V+ DE  +V ++S C ++ + L     + +++ +S M +  A +  AL+ M  +   
Sbjct: 349 SEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRID-ASLGNALLSMYTELNC 407

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           ++   ++F+ M   D++S+ +MI  L+ +    QA  LF+RM    + P+      +L A
Sbjct: 408 VESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAA 467

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           C  V  ++ G R        ++I  +      + D+    G   +A +L    P +    
Sbjct: 468 CEDVTCLDFG-RSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCP-DRDLI 525

Query: 502 AWGALLGACKLYSDIELGELVANRLF-ELEPQNAGSYVLLSNI 543
           +W A++ +    +      L+ +R+  E EP +     +LS+ 
Sbjct: 526 SWNAMIASYVKNNQAHKALLLFHRMISEAEPNSVTIINVLSSF 568


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 236/369 (63%), Gaps = 1/369 (0%)

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           TA++  YA  G    A+  FD  P R     N ++   V  G++  AR++FD M ER++V
Sbjct: 79  TALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMV 138

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           S+ TMI GYA  G++  AR +F    DRD  +WS+++S Y +  +  +A++++ +M +  
Sbjct: 139 SWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAAC 198

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V PD   +VS++SACS +G L +   V  ++  + ++L    +  AL+DM AKCG+++ +
Sbjct: 199 VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELD-VKLGTALIDMYAKCGDIENS 257

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F +MP +DV+++ SMI GL+ HG G  A+SLF RMLSEGL P+EV F  VL +C+H+
Sbjct: 258 VRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHL 317

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV DG ++F +M  V+ + P  +HY CMVDLLGR+GH++ A +L+  MP EP A  W A
Sbjct: 318 GLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRA 377

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC++Y ++E+ E    +L  L+P   G YVLLSNIYA A+ W  V  +R  ++   +
Sbjct: 378 LLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERI 437

Query: 566 RKIPGCSSL 574
           ++IPG SS+
Sbjct: 438 QRIPGRSSI 446



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           VFN + + + F W++++  Y++  R  +   ++ R +R   V PD  T   V+ ACS + 
Sbjct: 159 VFNGMDDRDAFSWSSMMSAYTKGRRSKDALELW-REMRAACVNPDCTTMVSVLSACSDMG 217

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++  G  +H  V   GV+ DV +GT+LID+Y K  +I  + +VF  MP ++V++W++MI+
Sbjct: 218 ALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMII 277

Query: 211 GYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           G A+ G   +A ++F  M       + V++  ++     +G +   ++ F  M   + V+
Sbjct: 278 GLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVT 337

Query: 267 -----YTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALI 302
                Y  M+D   + G +  A+ L    P + D V W AL+
Sbjct: 338 PKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALL 379



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 91/187 (48%), Gaps = 4/187 (2%)

Query: 25  RSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           R+A +N P  + ++S L+            +VH  +   G+E D  L    I + ++   
Sbjct: 195 RAACVN-PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDM-YAKCG 252

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            +  S  VF+ +   +   W++++ G + +    +  ++F R++ E   P++ TF  V+ 
Sbjct: 253 DIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLI 312

Query: 145 ACSHVLSVREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNV 202
           +C+H+  V +G    +++ +  GV   V     ++DL G+   I  A+++  +MP E + 
Sbjct: 313 SCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDA 372

Query: 203 VSWTAMI 209
           V W A++
Sbjct: 373 VIWRALL 379


>gi|50253500|gb|AAT71952.1| At3g21470 [Arabidopsis thaliana]
 gi|53850541|gb|AAU95447.1| At3g21470 [Arabidopsis thaliana]
          Length = 442

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 258/441 (58%), Gaps = 42/441 (9%)

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV------------- 219
           VG+SLI +YGK   +  ARKVFDEMPERNV +W AMI GY S GD V             
Sbjct: 2   VGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCR 61

Query: 220 -------------------EAKTVFDLMP-ERSNV-SWNALIGGLVKIGDLRSARQLFDE 258
                              +A+ +F+ MP E  NV +W+ ++G  V    +  AR+ F++
Sbjct: 62  NTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFED 121

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
           +PE+N   ++ M+ GY ++GD+  AR++F     RD+V W+ LI+GYAQNG  D+A+  F
Sbjct: 122 IPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAF 181

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
            +M  +  +PD   + S++SAC+Q G LD+   V S ++   ++L++  V  AL+DM AK
Sbjct: 182 FNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQ-FVSNALIDMYAK 240

Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
           CG+++ A  +FE++  R V    SMI  L+IHG G++A+ +F  M S  L PDE+ F  V
Sbjct: 241 CGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAV 300

Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP 498
           LTAC H G + +G + F  M+    + P+ +H+ C++ LLGR+G LK AY L+  M V+P
Sbjct: 301 LTACVHGGFLMEGLKIFSEMK-TQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKP 359

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY-----VLLSNIYATADRWLDV 553
           + +  GALLGACK++ D E+ E V  ++ E       SY       +SN+YA  +RW   
Sbjct: 360 NDTVLGALLGACKVHMDTEMAEQVM-KIIETAGSITNSYSENHLASISNLYAHTERWQTA 418

Query: 554 CLVRSKMKERGLRKIPGCSSL 574
             +R +M++RGL K PG SSL
Sbjct: 419 EALRVEMEKRGLEKSPGLSSL 439



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 38/256 (14%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           A+F R+   +  +WNTL+ GY+QN    +    F  +  E   PD  T   ++ AC+   
Sbjct: 148 AIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSG 207

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
            +  G  +H+ +   G++ + FV  +LID+Y K  ++  A  VF+ +  R+V    +MI 
Sbjct: 208 RLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMIS 267

Query: 211 GYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
             A  G   EA  +F      DL P+   +++ A++   V  G L    ++F EM  ++V
Sbjct: 268 CLAIHGKGKEALEMFSTMESLDLKPDE--ITFIAVLTACVHGGFLMEGLKIFSEMKTQDV 325

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                                        +V  +  LI    ++G+  EA ++  +M   
Sbjct: 326 ---------------------------KPNVKHFGCLIHLLGRSGKLKEAYRLVKEM--- 355

Query: 325 NVQPDEFILVSLMSAC 340
           +V+P++ +L +L+ AC
Sbjct: 356 HVKPNDTVLGALLGAC 371



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           +VHS I  +G+E +  +    I + ++    L  +T+VF  I   +    N+++   + +
Sbjct: 214 EVHSLINHRGIELNQFVSNALIDM-YAKCGDLENATSVFESISVRSVACCNSMISCLAIH 272

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            +  E   +F  +   +  PD+ TF  V+ AC H   + EG  I + +    V  +V   
Sbjct: 273 GKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHF 332

Query: 175 TSLIDLYGKRKEISCARKVFDEM 197
             LI L G+  ++  A ++  EM
Sbjct: 333 GCLIHLLGRSGKLKEAYRLVKEM 355


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/485 (37%), Positives = 263/485 (54%), Gaps = 52/485 (10%)

Query: 135 DKYTFPLVI---KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
           DK    L+I   K+  H+L       IHAA++R G+     +   L   Y     +  + 
Sbjct: 22  DKDNLALLIDNSKSTHHLLQ------IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSV 75

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----------------------P 229
            +F   P  NV  WT +I  +A       A + +  M                      P
Sbjct: 76  TLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHP 135

Query: 230 ERSNVSW-------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
            R+  S                L+    + GD+ SA++LFD MPER++VSYT M+  YAK
Sbjct: 136 ARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAK 195

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK-------NVQPD 329
            G +  AR LFE    +DVV W+ +I GYAQ+G P+EA+  F  M           V+P+
Sbjct: 196 HGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPN 255

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
           E  +V+++S+C QVG L+   WV SY+  + + ++   V  ALVDM  KCG+++ A ++F
Sbjct: 256 EITVVAVLSSCGQVGALECGKWVHSYVENNGIKVN-VRVGTALVDMYCKCGSLEDARKVF 314

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + M  +DVV++ SMI G  IHG   +A+ LF  M   G+ P ++ F  VLTAC+H GLV 
Sbjct: 315 DVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVS 374

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
            GW  F++M++ Y + P  EHY CMV+LLGR G ++ AY+L+ SM VEP    WG LL A
Sbjct: 375 KGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWA 434

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+++S++ LGE +A  L      ++G+YVLLSN+YA A  W+ V  VRS MK  G+ K P
Sbjct: 435 CRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEP 494

Query: 570 GCSSL 574
           GCSS+
Sbjct: 495 GCSSI 499



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 207/436 (47%), Gaps = 56/436 (12%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           LI   K   HL Q+H+ ++++GL   H ++   +   ++    L +S  +F+R  NPN F
Sbjct: 29  LIDNSKSTHHLLQIHAALLRRGLHH-HPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVF 87

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           LW  ++  ++    F    + + +++     P+ +T   ++KAC+    +    A+H+  
Sbjct: 88  LWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHA 143

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
           I++G+   ++V T L+D Y +  +++ A+K+FD MPER++VS+TAM+  YA  G L EA+
Sbjct: 144 IKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEAR 203

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP---------------------- 260
            +F+ M  +  V WN +I G  + G    A   F +M                       
Sbjct: 204 VLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVL 263

Query: 261 ------------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
                                   + NV   T ++D Y K G +  AR +F+    +DVV
Sbjct: 264 SSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVV 323

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW--VDS 354
           AW+++I GY  +G  DEA+++F +MC   V+P +   V++++AC+  G L    W   DS
Sbjct: 324 AWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAG-LVSKGWEVFDS 382

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHG 413
                 M+    H    +V++  + G M  A +L  +M    D V + +++    IH + 
Sbjct: 383 MKDGYGMEPKVEH-YGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNV 441

Query: 414 RQAVSLFDRMLSEGLT 429
                + + ++S GL 
Sbjct: 442 SLGEEIAEILVSNGLA 457


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/571 (30%), Positives = 294/571 (51%), Gaps = 42/571 (7%)

Query: 17  SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI 76
           +++LP C+ + P                     Q  + QVH+  +K G + +      F+
Sbjct: 145 TTLLPGCNDAVP---------------------QNAVGQVHAFAVKLGFDTNL-----FL 178

Query: 77  SLCHSLATP------LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130
           ++C+ L         L  +  +F  I++ ++  +NTL+ GY ++  + E   +F+++ + 
Sbjct: 179 TVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQS 238

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
              P  +TF  V+KA   +     G  +H   +  G   D  VG  ++  Y K   +   
Sbjct: 239 GHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLET 298

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKI 246
           R +F+EMPE + VS+  +I  Y+      E+  +F  M     +R N  +  ++     +
Sbjct: 299 RNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANL 358

Query: 247 GDLRSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
             L+  RQ+  +       S      +++D YAK      A  +F++   R  V+W+ALI
Sbjct: 359 SSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALI 418

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SGY Q G     +K+F+ M   N++ D+    +++ A +   +L L   + +++ RS  +
Sbjct: 419 SGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSG-N 477

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
           L      + LVDM AKCG++  A ++FE MP+R+ VS+ ++I   + +G G  A+  F +
Sbjct: 478 LENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTK 537

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M+  GL PD V+   VL ACSH G VE G  FF+AM  +Y I P  +HYACM+DLLGR G
Sbjct: 538 MIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNG 597

Query: 483 HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP-QNAGSYVLLS 541
               A +L++ MP EP    W ++L AC++Y +  L E  A +LF +E  ++A +YV +S
Sbjct: 598 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMS 657

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           NIYA A +W +V  V+  M+ERG++K+P  S
Sbjct: 658 NIYAAAGKWENVRHVKKAMRERGIKKVPAYS 688



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 212/456 (46%), Gaps = 38/456 (8%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           LS +  +F+ + +     W  L+  Y+ N+ F E F +F ++ R   +PD  TF  ++  
Sbjct: 91  LSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPG 150

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVF--VGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
           C+  +       +HA  ++ G D ++F  V   L+  Y + + +  A  +F+E+ +++ V
Sbjct: 151 CNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSV 210

Query: 204 SWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL---- 255
           ++  +I GY   G   EA  +F  M +     S+ +++ ++  +V + D    +QL    
Sbjct: 211 TFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLS 270

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
                 R+      ++  Y+K   +   R+LF   P+ D V+++ +IS Y+Q  Q +E++
Sbjct: 271 VTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESL 330

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
            +F +M         F   +++S  + + +L +   V      +  D S  HV  +LVDM
Sbjct: 331 NLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATAD-SILHVGNSLVDM 389

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
            AKC   D A  +F+++  R  VS+ ++I G    G     + LF +M    L  D+  F
Sbjct: 390 YAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTF 449

Query: 436 TIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
             VL A +           H  ++  G      ++NV++        + +VD+  + G +
Sbjct: 450 ATVLKASAGFASLLLGKQLHAFIIRSG-----NLENVFS-------GSGLVDMYAKCGSI 497

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
           K A ++   MP + +A +W AL+ A   Y+D   GE
Sbjct: 498 KDAVQVFEEMP-DRNAVSWNALISA---YADNGDGE 529



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           KT F+    RSN +    +  L++ G + +A +++DEMP +N VS  TMI GY K+GD++
Sbjct: 37  KTGFNTDTCRSNFT----VEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLS 92

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SAR LF+A PDR VV W+ L+  YA N   DEA K+F  MC     PD     +L+  C+
Sbjct: 93  SARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCN 152

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSR-AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
                +    V ++  +   D +    V   L+    +   +D A  LFE + ++D V++
Sbjct: 153 DAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTF 212

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
            ++I G    G   +A+ LF +M   G  P +  F+ VL A   VGL
Sbjct: 213 NTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAV--VGL 257



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 164/392 (41%), Gaps = 46/392 (11%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           + A +I+ G + D       ++   +R ++S A KV+DEMP +N VS   MI GY  +GD
Sbjct: 31  VDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGD 90

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDG 273
           L  A+ +FD MP+R+ V+W  L+G          A +LF +M       + V++TT++ G
Sbjct: 91  LSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPG 150

Query: 274 -------------------------------------YAKVGDMTSARSLFEAAPDRDVV 296
                                                Y +V  +  A  LFE   D+D V
Sbjct: 151 CNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSV 210

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            ++ LI+GY ++G   EA+ +F  M     +P +F    ++ A   + +  L   +   L
Sbjct: 211 TFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHG-L 269

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
           S +      A V   ++   +K   +     LF  MP  D VSY  +I   S      ++
Sbjct: 270 SVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEES 329

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMV 475
           ++LF  M   G       F  +L+  +++  ++ G +     Q + A   S  H    +V
Sbjct: 330 LNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVH--CQAIVATADSILHVGNSLV 387

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           D+  +      A  +  S+      S W AL+
Sbjct: 388 DMYAKCEMFDEAELIFKSLSQRSTVS-WTALI 418


>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
          Length = 749

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 278/477 (58%), Gaps = 6/477 (1%)

Query: 100 NTFLWNTLLKGYSQ--NSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGT 156
           + F W  ++ GY++  N    +   +FV+L+ E+ V P+++T+  V++AC  + ++  G 
Sbjct: 209 DLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGR 268

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           +IH  +I+ G + +  + ++L+DLY +   +  A  V++ +   ++++   +I G+ S+G
Sbjct: 269 SIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMG 328

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
              +AK VF  M E  + S+N +I      G L   R++F+ MP RN+V+  +M+    +
Sbjct: 329 RTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQ 388

Query: 277 VGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
            G +   R LFE   D R+ V W+++ISGY QN Q  EA+K+F+ MC  +++       +
Sbjct: 389 NGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPA 448

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           L+ AC+ +G ++    V + L ++  + S  +V  ALVDM +KCG +  A   F  + + 
Sbjct: 449 LLHACATIGTIEQGKMVHALLCKTPFE-SNGYVGTALVDMYSKCGCVSDARAAFSCIMSP 507

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           +V S+ S+I GL+ +GH  +A+  F RML   + P+E+ F  +L A +  GLV  G RFF
Sbjct: 508 NVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFF 567

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
            +M++ Y +VP+ EHY C VDLLGR   ++ A + ++ MP+      WGALL AC    D
Sbjct: 568 HSMES-YGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMD 626

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +E+GE VA +LF +  ++  +YV +SNIYA   +W DV  VR++++    +K PGCS
Sbjct: 627 LEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAKKEPGCS 683



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/458 (21%), Positives = 201/458 (43%), Gaps = 41/458 (8%)

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
           S +  VF+ +       WN  +  +++  R  +      R+ R  A  D+ T+   + AC
Sbjct: 63  SAARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGAC 122

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           +    +R G  +H  V++ G D+   VG SL+D Y    ++  AR +FD +   N + W+
Sbjct: 123 ARGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWS 182

Query: 207 AMIVGYASVGDLVEAKTVFDLM-PERSNVSWNALIGGLVKIGD------LRSARQLFDE- 258
            M+V       L +A  +   M P R   +W A+I G  +  +      L    QL  E 
Sbjct: 183 PMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAED 242

Query: 259 --MPERNVVSYTTMIDGYAKVGDMTSARS----LFEAAPDRDVVAWSALISGYAQNGQPD 312
             MP  N  +Y +++    K+G +   RS    L ++  + + +  SAL+  Y ++G  D
Sbjct: 243 GVMP--NEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVD 300

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMS---------ACSQVGNLDLSNW---VDSYLSRSH 360
           +AV +++ +   ++     ++   +S           SQ+   D  ++   + +Y     
Sbjct: 301 DAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGR 360

Query: 361 MD--------LSRAHVIA--ALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSI 409
           ++        + R +++   +++ +  + G ++   +LFE + + R+ V++ SMI G   
Sbjct: 361 LEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQ 420

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           +    +A+ LF  M    +      F  +L AC+ +G +E G +   A+        +  
Sbjct: 421 NDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQG-KMVHALLCKTPFESNGY 479

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
               +VD+  + G +  A    + + + P+ ++W +L+
Sbjct: 480 VGTALVDMYSKCGCVSDARAAFSCI-MSPNVASWTSLI 516



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 115/285 (40%), Gaps = 40/285 (14%)

Query: 5   DEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSAL-------TLIKKCKLQTHLHQ-- 55
           DE NT   +   S  + N   S  +      C LS          L+  C     + Q  
Sbjct: 404 DERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGK 463

Query: 56  -VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            VH+ + K   E +  +    + + +S    +S + A F+ I++PN   W +L+ G +QN
Sbjct: 464 MVHALLCKTPFESNGYVGTALVDM-YSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQN 522

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             ++E    F R+++    P++ TF  ++ A +    V +G     ++  +GV   V   
Sbjct: 523 GHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHY 582

Query: 175 TSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
           T  +DL G+ + +  A K   +MP   + V W A++       DL   + V         
Sbjct: 583 TCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKV--------- 633

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
                             A +LF  M  +++ +Y  M + YAK+G
Sbjct: 634 ------------------AEKLF-YMGTKHISAYVAMSNIYAKLG 659


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 264/456 (57%), Gaps = 41/456 (8%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA +IR G  +D F+   L+    K   I  A ++F      NV  +TA+I G+ S G+
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVK-------------------------------- 245
             +A  ++  M   S +  N L+  ++K                                
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 246 -------IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                   G+L  AR++F+EMPE +VV+ T MI  Y+  G +  A ++F     +D V W
Sbjct: 188 IMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           +A+I G+ +N + + A++ F  M  +NV+P+EF +V ++SACSQ+G L++  WV SY+ +
Sbjct: 247 TAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
             ++L+   V  AL++M ++CG++D A  +F+ M +RDV++Y +MI GLS++G  RQA+ 
Sbjct: 307 FEIELN-LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
           LF  M+   L P  V F  VL ACSH GLV+ G++ F +M   Y + P  EHY CMVDLL
Sbjct: 366 LFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLL 425

Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
           GR G L+ AY+L+ +M + P     G LL ACK++ ++ELGE VA  L +    ++G+YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYV 485

Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LLS++YA++ +W +   VR+KMKE G++K PGCSS+
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 210/439 (47%), Gaps = 54/439 (12%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQV---HSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           PK    L    +I   +   H++QV   H+ +I+ G  QD  +V   +  C S    + Y
Sbjct: 41  PKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHAIDY 99

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           ++ +F    NPN +L+  L+ G+  +  + +   ++ R++ +  +PD Y    ++KAC  
Sbjct: 100 ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGS 159

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
            L++REG  +H+  ++ G+  +  V   +++LYGK  E+  AR+VF+EMPE +VV+ T M
Sbjct: 160 QLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVM 218

Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--- 265
           I  Y+  G + EA  VF  +  +  V W A+I G V+  ++  A + F  M   NV    
Sbjct: 219 ISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNE 278

Query: 266 -----------------------SY-------------TTMIDGYAKVGDMTSARSLFEA 289
                                  SY               +I+ Y++ G +  A+++F+ 
Sbjct: 279 FTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDE 338

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
             DRDV+ ++ +ISG + NG+  +A+++F  M  + ++P     V +++ACS  G +D  
Sbjct: 339 MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNR----DVVSYCS 402
             +   ++R +    +      +VD+  + G ++ A +L  TM   P+      ++S C 
Sbjct: 399 FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACK 458

Query: 403 MIKGLSIHGHGRQAVSLFD 421
           M K L +   G Q   + +
Sbjct: 459 MHKNLEL---GEQVAKVLE 474


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/448 (36%), Positives = 261/448 (58%), Gaps = 10/448 (2%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           P+++TF  ++ A +  + V  G  +H+ + + G D ++FVGT+L+D+Y K  ++  A +V
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVF-DLMPERS----NVSWNALIGGLVKIGD 248
           FD+MPERN+VSW +MIVG+        A  VF D++ E++     VS ++++     +G 
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 249 LRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           L   RQ+   + +  +V  T    +++D Y K         LF+   DRDVV W+ L+ G
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
           + QN + +EA   F  M  + + PDE    +++ + + +  L     +   + +    + 
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGY-VK 246

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
              ++ +L+ M AKCG++  A ++FE + + +V+S+ +MI    +HG   Q + LF+ ML
Sbjct: 247 NMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHML 306

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
           SEG+ P  V F  VL+ACSH G VE+G   F +M+ ++ + P PEHYACMVDLLGR G L
Sbjct: 307 SEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWL 366

Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
             A   + SMP++P  S WGALLGAC+ Y ++++G   A RLFE+EP N G+YVLL+N+ 
Sbjct: 367 DEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMC 426

Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
             + R  +   VR  M   G+RK PGCS
Sbjct: 427 TRSGRLEEANEVRRLMGVNGVRKEPGCS 454



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 223/486 (45%), Gaps = 56/486 (11%)

Query: 23  CSRSAPINFPKPSCL-LSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           CS   P  F   S L  SA T+     +  H  Q+HS I K G + +  +    + + ++
Sbjct: 3   CSGPYPNQFTFSSILSASAATM-----MVLHGQQLHSLIHKHGFDANIFVGTALVDM-YA 56

Query: 82  LATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFP 140
               +  +  VF+++   N   WN+++ G+  N+ +     +F  ++RE+ V P++ +  
Sbjct: 57  KCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVS 116

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            V+ AC+++  +  G  +H  V+++G+    +V  SL+D+Y K +      K+F  + +R
Sbjct: 117 SVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDR 176

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLF 256
           +VV+W  +++G+       EA   F +M          S++ ++     +  L     + 
Sbjct: 177 DVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIH 236

Query: 257 DEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           D++ +    +N+    ++I  YAK G +  A  +FE   D +V++W+A+IS Y  +G  +
Sbjct: 237 DQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCAN 296

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH-MDLSRAHVIAA 371
           + +++F  M S+ ++P     V ++SACS  G ++      + + + H M+    H  A 
Sbjct: 297 QVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEH-YAC 355

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           +VD+  + G +D A    E+MP                                  + P 
Sbjct: 356 MVDLLGRAGWLDEAKRFIESMP----------------------------------MKPT 381

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYEL 490
              +  +L AC   G ++ G    EA + ++ + P +P +Y  + ++  R+G L+ A E+
Sbjct: 382 PSVWGALLGACRKYGNLKMGR---EAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEV 438

Query: 491 LNSMPV 496
              M V
Sbjct: 439 RRLMGV 444



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 159/351 (45%), Gaps = 39/351 (11%)

Query: 15  SCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH 74
           S SS+L  C+    +NF +                     QVH  ++K GL     ++  
Sbjct: 114 SVSSVLSACANMGGLNFGR---------------------QVHGVVVKFGLVPLTYVMNS 152

Query: 75  FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134
            + + +           +F  + + +   WN L+ G+ QN +F E    F  + RE  +P
Sbjct: 153 LMDM-YFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILP 211

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D+ +F  V+ + + + ++ +GTAIH  +I+ G  +++ +  SLI +Y K   +  A +VF
Sbjct: 212 DEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVF 271

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLR 250
           + + + NV+SWTAMI  Y   G   +   +F+ M     E S+V++  ++      G + 
Sbjct: 272 EGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVE 331

Query: 251 SARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVA-WSALISG 304
                F+ M + + ++     Y  M+D   + G +  A+   E+ P +   + W AL+  
Sbjct: 332 EGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGA 391

Query: 305 ---YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
              Y       EA +   +M   N  P  ++L++ M  C++ G L+ +N V
Sbjct: 392 CRKYGNLKMGREAAERLFEMEPYN--PGNYVLLANM--CTRSGRLEEANEV 438


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 294/530 (55%), Gaps = 17/530 (3%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  ++  G++ + S+    +S+ +S       ++ +F  +   +T  WN ++ GY Q+
Sbjct: 260 QLHGLVVVSGVDFEGSIKNSLLSM-YSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E  T F  +I    +PD  TF  ++ + S   ++     IH  ++R  +  D+F+ 
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
           ++LID Y K + +S A+ +F +    +VV +TAMI GY   G  +++  +F  +      
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKIS 438

Query: 229 -PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM----IDGYAKVGDMTSA 283
             E + VS   +IG L+    L+  R+L   + ++   +   +    ID YAK G M  A
Sbjct: 439 PNEITLVSILPVIGILLA---LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLA 495

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +FE    RD+V+W+++I+  AQ+  P  A+ IF  M    +  D   + + +SAC+ +
Sbjct: 496 YEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANL 555

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            +      +  ++ + H   S  +  + L+DM AKCGN+  A  +F+TM  +++VS+ S+
Sbjct: 556 PSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSI 614

Query: 404 IKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           I     HG  + ++ LF  M+ + G+ PD++ F  ++++C HVG V++G RFF +M   Y
Sbjct: 615 IAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDY 674

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P  EHYAC+VDL GR G L  AYE + SMP  P A  WG LLGAC+L+ ++EL E+ 
Sbjct: 675 GIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVA 734

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +++L +L+P N+G YVL+SN +A A  W  V  VRS MKER ++KIPG S
Sbjct: 735 SSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 218/431 (50%), Gaps = 15/431 (3%)

Query: 90  TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
           + +F+R++  +  +WN +L GY++      V   F  +  ++  P+  TF  V+  C+  
Sbjct: 193 SKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASK 252

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
           L +  G  +H  V+  GVD +  +  SL+ +Y K      A K+F  M   + V+W  MI
Sbjct: 253 LLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312

Query: 210 VGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER- 262
            GY   G + E+ T F       ++P+   +++++L+  + K  +L   +Q+   +    
Sbjct: 313 SGYVQSGLMEESLTFFYEMISSGVLPDA--ITFSSLLPSVSKFENLEYCKQIHCYIMRHS 370

Query: 263 ---NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
              ++   + +ID Y K   ++ A+++F      DVV ++A+ISGY  NG   +++++F 
Sbjct: 371 ISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFR 430

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            +    + P+E  LVS++     +  L L   +  ++ +   D +R ++  A++DM AKC
Sbjct: 431 WLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFD-NRCNIGCAVIDMYAKC 489

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G M+ A E+FE +  RD+VS+ SMI   +   +   A+ +F +M   G+  D V+ +  L
Sbjct: 490 GRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAAL 549

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +AC+++   E   +        +++       + ++D+  + G+LK+A  +  +M  E +
Sbjct: 550 SACANLP-SESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKN 607

Query: 500 ASAWGALLGAC 510
             +W +++ AC
Sbjct: 608 IVSWNSIIAAC 618



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 220/514 (42%), Gaps = 42/514 (8%)

Query: 20  LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC 79
           L N SR      P+   LL  L       L     QVH+ +I   +  D       + + 
Sbjct: 23  LRNSSRFLEETIPRRLSLL--LQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGM- 79

Query: 80  HSLATPLSYSTAVFNRI------VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
           +++    S    +F R+      + P    WN+++  + +N    +    + +++     
Sbjct: 80  YAMCGSFSDCGKMFYRLDLRRSSIRP----WNSIISSFVRNGLLNQALAFYFKMLCFGVS 135

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           PD  TFP ++KAC  + + +    +   V   G+D + FV +SLI  Y +  +I    K+
Sbjct: 136 PDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKL 195

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR 253
           FD + +++ V W  M+ GYA  G L      F +M     +S NA+    V    + +++
Sbjct: 196 FDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM-RMDQISPNAVTFDCVL--SVCASK 252

Query: 254 QLFD---EMPERNVVS--------YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
            L D   ++    VVS          +++  Y+K G    A  LF      D V W+ +I
Sbjct: 253 LLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           SGY Q+G  +E++  F +M S  V PD     SL+ + S+  NL+    +  Y+ R  + 
Sbjct: 313 SGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSIS 372

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
           L    + +AL+D   KC  +  A  +F    + DVV + +MI G   +G    ++ +F  
Sbjct: 373 LD-IFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRW 431

Query: 423 MLSEGLTPDEVAFTIVLTACS-----HVGLVEDGWRFFEAMQNVYAIVPSPEHYAC-MVD 476
           ++   ++P+E+    +L          +G    G+   +   N   I        C ++D
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI-------GCAVID 484

Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           +  + G +  AYE+   +      S W +++  C
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVS-WNSMITRC 517


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 258/460 (56%), Gaps = 36/460 (7%)

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++R    +HAA +R GVD D  VG  L   Y     +     +    P+   V +T+ I 
Sbjct: 47  TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIH 106

Query: 211 GYASVGDLVEAKTVFD------LMPERSNVS----------------------------- 235
            ++S G  + A  +        L+P    +S                             
Sbjct: 107 AHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSY 166

Query: 236 -WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
              AL+G   + GD  +AR LFDEMP+ +VV  T M+  YAK+G +  AR LF+  P +D
Sbjct: 167 VATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKD 226

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            + W+A+I GY Q+G+P+EA+++F  M    V PDE  ++  +SA +Q+G  +   W+ S
Sbjct: 227 FICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHS 286

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+  S      A V  AL+DM  KCG+++ A  +F ++ ++D+V + +MI G ++HG  R
Sbjct: 287 YVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSR 346

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ +F ++ S+GL P ++ F  +L ACSH GLV++G +FF++M+  YAIVP  EHY CM
Sbjct: 347 KALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCM 406

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G ++ A+ L+ SM + P    W +LL AC+L+ ++ LG+ +A+ L      N+
Sbjct: 407 VDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANS 466

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           G Y+LLSNIYA    W +V  VRS MK  G++K PGCS++
Sbjct: 467 GMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAI 506



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 197/427 (46%), Gaps = 45/427 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+  C       ++H+  ++ G++ D + V   +   ++ +  L  +  +     +P T 
Sbjct: 41  LLTGCATLRRTGELHAAAVRAGVDGDRA-VGFRLQRAYAASDRLDLTVTLLRLTPDPTTV 99

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            + + +  +S     +    +   ++    +P  +T    + AC H L++  G A+HA  
Sbjct: 100 FYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC-HGLAL--GRALHAYA 156

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            +  +  D +V T+L+ +Y +  +   AR +FDEMP+ +VV  TAM+  YA +G L +A+
Sbjct: 157 FKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDAR 216

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF----------DEMP------------ 260
            +FD MP +  + WNA+I G  + G    A +LF          DE+             
Sbjct: 217 ELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLG 276

Query: 261 ------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
                             + N    T +ID Y K G +  A S+F +  D+D+V W+A+I
Sbjct: 277 TAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMI 336

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           +GYA +G   +A+++FS + S+ + P +   + L++ACS  G +D  +     +   +  
Sbjct: 337 NGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 396

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           + +      +VD+  + G ++ A  L ++M    D V + S++    +H +      + D
Sbjct: 397 VPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIAD 456

Query: 422 RMLSEGL 428
            +++ GL
Sbjct: 457 YLVAGGL 463


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 258/460 (56%), Gaps = 36/460 (7%)

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++R    +HAA +R GVD D  VG  L   Y     +     +    P+   V +T+ I 
Sbjct: 46  TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIH 105

Query: 211 GYASVGDLVEAKTVFD------LMPERSNVS----------------------------- 235
            ++S G  + A  +        L+P    +S                             
Sbjct: 106 AHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSY 165

Query: 236 -WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
              AL+G   + GD  +AR LFDEMP+ +VV  T M+  YAK+G +  AR LF+  P +D
Sbjct: 166 VATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKD 225

Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
            + W+A+I GY Q+G+P+EA+++F  M    V PDE  ++  +SA +Q+G  +   W+ S
Sbjct: 226 FICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHS 285

Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
           Y+  S      A V  AL+DM  KCG+++ A  +F ++ ++D+V + +MI G ++HG  R
Sbjct: 286 YVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSR 345

Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
           +A+ +F ++ S+GL P ++ F  +L ACSH GLV++G +FF++M+  YAIVP  EHY CM
Sbjct: 346 KALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCM 405

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
           VDLLGR G ++ A+ L+ SM + P    W +LL AC+L+ ++ LG+ +A+ L      N+
Sbjct: 406 VDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANS 465

Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           G Y+LLSNIYA    W +V  VRS MK  G++K PGCS++
Sbjct: 466 GMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAI 505



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 197/427 (46%), Gaps = 45/427 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           L+  C       ++H+  ++ G++ D + V   +   ++ +  L  +  +     +P T 
Sbjct: 40  LLTGCATLRRTGELHAAAVRAGVDGDRA-VGFRLQRAYAASDRLDLTVTLLRLTPDPTTV 98

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
            + + +  +S     +    +   ++    +P  +T    + AC H L++  G A+HA  
Sbjct: 99  FYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC-HGLAL--GRALHAYA 155

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
            +  +  D +V T+L+ +Y +  +   AR +FDEMP+ +VV  TAM+  YA +G L +A+
Sbjct: 156 FKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDAR 215

Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF----------DEMP------------ 260
            +FD MP +  + WNA+I G  + G    A +LF          DE+             
Sbjct: 216 ELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLG 275

Query: 261 ------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
                             + N    T +ID Y K G +  A S+F +  D+D+V W+A+I
Sbjct: 276 TAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMI 335

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
           +GYA +G   +A+++FS + S+ + P +   + L++ACS  G +D  +     +   +  
Sbjct: 336 NGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 395

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           + +      +VD+  + G ++ A  L ++M    D V + S++    +H +      + D
Sbjct: 396 VPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIAD 455

Query: 422 RMLSEGL 428
            +++ GL
Sbjct: 456 YLVAGGL 462


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 166/494 (33%), Positives = 272/494 (55%), Gaps = 41/494 (8%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  +  + A+F R+   N   WNT+L+ Y+   R  +   +F R+     V D  ++
Sbjct: 115 YARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM----PVRDAGSW 170

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
            +++        VR G+                              +  AR++F  MPE
Sbjct: 171 NILLATL-----VRSGS------------------------------VDKARELFGRMPE 195

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           R+V++WT M+ G A  G + EA+ +FD MPER+ VSWNA+I G  +   +  A  LF +M
Sbjct: 196 RDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKM 255

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PER++ S   M+ G+ +  D+  AR LF+  P+R+VV W+ +++GY +  Q + A+ +FS
Sbjct: 256 PERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFS 315

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M     +P++   +  + ACS +  L     V   + ++      A V +AL+++ AKC
Sbjct: 316 GMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFD-AFVESALMNVYAKC 374

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  A +LF+    +D++S+  +I   + HG G +A+ L+++M   G  P++V + ++L
Sbjct: 375 GEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLL 434

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP- 498
           +ACSH GLV++G + FE+M N  +I    EHY C++DL  R G L  A  L++ + ++P 
Sbjct: 435 SACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPA 494

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558
             S W ALLG C  + +  +G L A  L + EP NAG+Y LLSNIYA+A +W +   +RS
Sbjct: 495 SGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRS 554

Query: 559 KMKERGLRKIPGCS 572
           +M  RGL+K PGCS
Sbjct: 555 EMNNRGLKKQPGCS 568



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 156/317 (49%), Gaps = 74/317 (23%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVF 225
           D DV   T+L+  Y +R  +  AR++FD  P+  RNVV+WTA++ GYA    + EA+ +F
Sbjct: 70  DWDVVSWTALVSAYARRGMLRDARELFDR-PDARRNVVTWTALLSGYARARLVDEAEALF 128

Query: 226 DLMPERSNVSWNA-------------------------------LIGGLVKIGDLRSARQ 254
             MP+R+ VSWN                                L+  LV+ G +  AR+
Sbjct: 129 QRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARE 188

Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
           LF  MPER+V+++TTM+DG A+ G +  AR LF++ P+R+VV+W+A+ISGY +N + DEA
Sbjct: 189 LFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEA 248

Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
           + +F  M  +++     ++   +       N DL                          
Sbjct: 249 LDLFMKMPERDIASCNIMVTGFIQ------NKDLK------------------------- 277

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
                    RA ELF+ MP R+VV++ +M+ G         A+ LF  ML  G  P++V 
Sbjct: 278 ---------RARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVT 328

Query: 435 FTIVLTACSHVGLVEDG 451
           F   L ACS +  + +G
Sbjct: 329 FLGALDACSDLAALCEG 345



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 29/305 (9%)

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           A    Y S G +  A     L  E+S+   N LI  L   G +  AR+LFD  P+ +VVS
Sbjct: 19  AAAAAYVSYGSMGAASAAVGL--EQSHDP-NRLIAELAAAGRVWDARKLFDGTPDWDVVS 75

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +T ++  YA+ G +  AR LF+  PD  R+VV W+AL+SGYA+    DEA  +F  M  +
Sbjct: 76  WTALVSAYARRGMLRDARELFD-RPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQR 134

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           NV     +L +  +A  +VG        D+      M +  A     L+    + G++D+
Sbjct: 135 NVVSWNTMLEAY-AAAGRVG--------DACALFDRMPVRDAGSWNILLATLVRSGSVDK 185

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A ELF  MP RDV+++ +M+ G++  G   +A  LFD M    +    V++  +++  + 
Sbjct: 186 ARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNV----VSWNAMISGYTR 241

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG--RTGHLKSAYELLNSMPVEPHASA 502
              +++    F  M       P  +  +C + + G  +   LK A EL + MP E +   
Sbjct: 242 NHRIDEALDLFMKM-------PERDIASCNIMVTGFIQNKDLKRARELFDEMP-ERNVVT 293

Query: 503 WGALL 507
           W  ++
Sbjct: 294 WTTMM 298



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 139/301 (46%), Gaps = 21/301 (6%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLAT------PLSYSTAVFNRIVNPNTFLWNTLLK 109
             +H I + L+    +    I+ C+ + T       L  +  +F+ +   N   W T++ 
Sbjct: 240 TRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMN 299

Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
           GY +  +      +F  ++     P++ TF   + ACS + ++ EG  +H  + +     
Sbjct: 300 GYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQF 359

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
           D FV ++L+++Y K  EI  ARK+FD   E++++SW  +I  YA  G  +EA  +++ M 
Sbjct: 360 DAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQ 419

Query: 230 ER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS-----YTTMIDGYAKVGDM 280
           E     ++V++  L+      G +    ++F+ M     ++     YT +ID  ++ G +
Sbjct: 420 ENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRL 479

Query: 281 TSARSL---FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
             A+ L    +  P    V WSAL+ G   N   +E++   +       +PD     +L+
Sbjct: 480 DDAKRLIHYLKIKPASGSV-WSALLGGC--NAHGNESIGNLAARNLLQAEPDNAGTYTLL 536

Query: 338 S 338
           S
Sbjct: 537 S 537


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 296/526 (56%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H +  +   E D S+V   I L +   + L  +  +F+ + N N   W T++ GY QN
Sbjct: 259 QIHGYAYRTAAESDASVVNALIDL-YCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQN 317

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
           S   E  ++F +L +    PD +    ++ +C  + ++ +G  +HA VI+  ++ D +V 
Sbjct: 318 SLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVK 377

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
            +LID+Y K + ++ AR VF+ + E + +S+ AMI GYA +GDL  A  +F  M     +
Sbjct: 378 NALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLK 437

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSL 286
            S +++ +L+G      DL  ++Q+   + +     ++ + + +ID Y+K   +  A+ +
Sbjct: 438 PSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLV 497

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    +RD+V W+A+I G AQN + +EAVK+F+ +    + P+EF  V+L++  S + ++
Sbjct: 498 FSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASI 557

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                  + + ++  D S  H+  AL+DM AKCG ++    LFE+   +DV+ + SMI  
Sbjct: 558 FHGQQFHAQIIKAGAD-SDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMIST 616

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + HGH  +A+ +F  M   G+ P+ V F  VL+AC+H GLV++G   F +M+  YA+ P
Sbjct: 617 YAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKTKYAVEP 676

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHYA +V+L GR+G L +A E +  MP+EP A+ W +LL AC L+ ++E+G       
Sbjct: 677 GTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNVEIGRYATEMA 736

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
              +P ++G  VL+SNIYA+   W D   +R  M   G+ K PG S
Sbjct: 737 LLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYS 782



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 234/487 (48%), Gaps = 20/487 (4%)

Query: 20  LPNCSRSAPINFPKPSCLL-SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
            P+   ++P   P    LL SAL    + +      QVH    K GL+ +  +    ++L
Sbjct: 122 FPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNL 181

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            ++ A  +  + +VF+ +   N   W  ++ GYSQ  +      +F R+  +   PD++ 
Sbjct: 182 -YAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFV 240

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
                 ACS +  V  G  IH    R   + D  V  +LIDLY K   +  AR++FD M 
Sbjct: 241 LASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSME 300

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-------ALIGGLVKIGDLRS 251
            RN+VSWT MI GY       EA ++F    + S   W        +++     +  +  
Sbjct: 301 NRNLVSWTTMIAGYMQNSLDTEAMSMF---WQLSQAGWQPDVFACTSILNSCGSLAAIWQ 357

Query: 252 ARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            RQ+   + + ++ S       +ID YAK   +T AR++FEA  + D ++++A+I GYA+
Sbjct: 358 GRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYAR 417

Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
            G    AV+IF  M   +++P     VSL+   S   +L+LS  +   + +S   L   +
Sbjct: 418 LGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLD-LY 476

Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
             +AL+D+ +K   +D A  +F  M NRD+V + +MI GL+ +  G +AV LF R+   G
Sbjct: 477 AGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSG 536

Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKS 486
           LTP+E  F  ++T  S +  +  G +F    Q + A   S  H +  ++D+  + G ++ 
Sbjct: 537 LTPNEFTFVALVTVASTLASIFHGQQFHA--QIIKAGADSDPHISNALIDMYAKCGFIEE 594

Query: 487 AYELLNS 493
              L  S
Sbjct: 595 GRLLFES 601



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 211/462 (45%), Gaps = 67/462 (14%)

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA  +  G+  D+F+   L+  Y K   +  AR++FD MP RN+VSW + I  YA  G  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 219 VEAKTVFDLMPERSNVSWNA-------LIGGLVKIGDLRSARQLFDEMP---------ER 262
            +A  +F   P     S +        L   L      R+AR  F E           + 
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAAR--FGEQVHGVAAKLGLDA 170

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
           NV   T +++ YAK G + +A S+F+A P R+ V W+A+I+GY+Q GQ   A+++F  M 
Sbjct: 171 NVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMG 230

Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382
              V+PD F+L S  SACS +G ++    +  Y  R+  + S A V+ AL+D+  KC  +
Sbjct: 231 LDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAE-SDASVVNALIDLYCKCSRL 289

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
             A  LF++M NR++VS+ +MI G   +    +A+S+F ++   G  PD  A T +L +C
Sbjct: 290 LLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSC 349

Query: 443 SHVGLVEDGWR-----------------------------------FFEAMQNVYAIVPS 467
             +  +  G +                                    FEA+    AI   
Sbjct: 350 GSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAI--- 406

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLYSDIELGELVAN 524
              Y  M++   R G L  A E+   M    ++P    + +LLG     SD+EL + +  
Sbjct: 407 --SYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHG 464

Query: 525 RLFELEPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            + +        AGS ++  ++Y+      D  LV S M+ R
Sbjct: 465 LIVKSGTSLDLYAGSALI--DVYSKFSLVDDAKLVFSLMQNR 504


>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 298/564 (52%), Gaps = 49/564 (8%)

Query: 55   QVHSHIIKK-GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
            +VH H++++  L +D S++   +S    +   +  +  +F  + + +   WN ++ GY+ 
Sbjct: 1199 EVHCHVLRRMELVEDVSVINSLMSFYLRIXQ-MEKAEFLFRNMKSRDLVSWNAIIAGYAS 1257

Query: 114  NSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-GVDEDV 171
            N  +++   +F   I  E + PD  T   V+ AC+HV +++    IH  +IR  G+ ED 
Sbjct: 1258 NGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDT 1317

Query: 172  FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG--------------- 216
             VG +L+  Y K      A + F  +  ++++SW A++  +   G               
Sbjct: 1318 SVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLRE 1377

Query: 217  ----DLVEAKTVFDLMPERSNVS-----------------------WNALIGGLVKIGDL 249
                D +   T+       S V                         N ++    K G++
Sbjct: 1378 GIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNM 1437

Query: 250  RSARQLFDEMPE-RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
            + A  +F  + E RNVV+  +MI GY        A ++F    + D+  W+ ++  YA+N
Sbjct: 1438 KYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAEN 1497

Query: 309  GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
              PD+A+ +F ++  + ++PD   ++S++ AC+ + ++ +      Y+ R+  +  R + 
Sbjct: 1498 DFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLN- 1556

Query: 369  IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
              A +DM +KCG++  A +LF + P +D+V + +M+ G ++HG G +A+ +F  ML  G+
Sbjct: 1557 -GAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGV 1615

Query: 429  TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
             PD V  T VL ACSH GLV++GW+ F +++ V+   P+ E YAC+VDLL R G +K AY
Sbjct: 1616 KPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAY 1675

Query: 489  ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
              +  MP+E +A+ WG LLGAC+ + ++ELG +VA+ LF++E  N G+YV++SN+YA   
Sbjct: 1676 TFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADA 1735

Query: 549  RWLDVCLVRSKMKERGLRKIPGCS 572
            RW  V  +R  M+ R L+K  GCS
Sbjct: 1736 RWDGVMEIRRLMRTRELKKPAGCS 1759



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 229/524 (43%), Gaps = 67/524 (12%)

Query: 29   INFPKPSCLLSALTLIKKCKLQTHLHQ-VHSHIIKKGLEQDHSLVAH-FISLCHSLATPL 86
            +N  KP+ +  A+ L    +L+    + VHS++IK GLE  H+L  +  IS+        
Sbjct: 1067 VNEAKPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLE-SHTLAGNALISMYAKCGLVC 1125

Query: 87   SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
            S + A FNRI   +   WN ++ G+S+N    E F +F  +++    P+  T   ++  C
Sbjct: 1126 SDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVC 1185

Query: 147  SHV---LSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
            + +      R G  +H  V+ R  + EDV V  SL+  Y +  ++  A  +F  M  R++
Sbjct: 1186 ASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDL 1245

Query: 203  VSWTAMIVGYASVGDLVEAKTVFD-------LMPERSNVSWNALIGGLVKIGDLRSARQL 255
            VSW A+I GYAS G+ ++A  +F        + P+  +V+  +++     + +L+ A+ +
Sbjct: 1246 VSWNAIIAGYASNGEWLKALELFSEFISLETIKPD--SVTLVSVLPACAHVHNLQVAKGI 1303

Query: 256  FDEMPERNVVSYTT-----MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
               +     +   T     ++  YAK     +A   F     +D+++W+A++  + ++G 
Sbjct: 1304 HGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGC 1363

Query: 311  PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH--V 368
                V +   M  + ++PD   +++++   + V  +       SY  R  +    A   +
Sbjct: 1364 ETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTL 1423

Query: 369  IAALVDMNAKCGNM--------------------------------DRAAELFETMPNRD 396
               ++D  AKCGNM                                D A  +F TM   D
Sbjct: 1424 GNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSETD 1483

Query: 397  VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE-----DG 451
            + ++  M++  + +    QA+SLF  +  +G+ PD V    +L AC+H+  V       G
Sbjct: 1484 LTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHG 1543

Query: 452  WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
            +       +V             +D+  + G +  AY+L  S P
Sbjct: 1544 YVIRACFNDV-------RLNGAFIDMYSKCGSVFGAYKLFLSSP 1580



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 163/343 (47%), Gaps = 16/343 (4%)

Query: 119  EVFTIFVRLIREEA--VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176
            E  ++F+  +R      P+      ++K+C    ++R G+ +H   ++ G      +   
Sbjct: 952  EALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLCKG 1011

Query: 177  LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV-GDLVEAKTVFDLMPERSNVS 235
            L++LY K   +    K+F EM +R+ V W  ++ G A       E   +F  M   +   
Sbjct: 1012 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 1071

Query: 236  WNALIGGLV--KIGDLR--SARQLFDEMPERNVVSYT----TMIDGYAKVGDMTS-ARSL 286
             N++   +V      LR  + + +   + +  + S+T     +I  YAK G + S A + 
Sbjct: 1072 PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 1131

Query: 287  FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV--- 343
            F     +DVV+W+A+I+G+++N   +EA K+F  M    +QP+   + S++  C+ +   
Sbjct: 1132 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 1191

Query: 344  GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
                    V  ++ R    +    VI +L+    +   M++A  LF  M +RD+VS+ ++
Sbjct: 1192 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAI 1251

Query: 404  IKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHV 445
            I G + +G   +A+ LF   +S E + PD V    VL AC+HV
Sbjct: 1252 IAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHV 1294


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 277/525 (52%), Gaps = 41/525 (7%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H+H++  GL +     A  +S  ++    LS +  +F++I N N   W  L    ++  
Sbjct: 49  LHAHLVIIGLARLTYFAAKLMSF-YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRG 107

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
            + E  + F  + +E   P+++  P ++KAC H+   R G  +H  +++   + D ++ +
Sbjct: 108 FYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIIS 167

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
           +LI +Y K                                G + +A  VFD + ++  V 
Sbjct: 168 ALIYMYSK-------------------------------CGHVEKACRVFDWIVDKDLVV 196

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFE--- 288
            NA++ G  + G +  A  L  +M +     NVVS+ T+I G+++VGD +    +F    
Sbjct: 197 MNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMT 256

Query: 289 -AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
               + DVV+W+++ISG+ QN    E    F +M  +   P    + SL+ AC+ V NL 
Sbjct: 257 ANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLR 316

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
               +  Y     ++    +V +ALVDM AKCG +  A  LF  MP R+ V++ S+I G 
Sbjct: 317 HGKEIHGYAMVIGVE-KDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGY 375

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS 467
           + HG+  +A+ LF++M       D + FT VL ACSH G+VE G   F  MQ  Y I P 
Sbjct: 376 ANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPR 435

Query: 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527
            EHYACMVDLLGR G L  AY+L+ +MPVEP    WGALLGAC+ + +IEL E+ A  LF
Sbjct: 436 LEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLF 495

Query: 528 ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ELEP++ GS +LLSN+YA A RW +   ++  MK+R   K PGCS
Sbjct: 496 ELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCS 540


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 282/506 (55%), Gaps = 15/506 (2%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
           ++ A  L  +  VF+RI+  N   W ++L G  QN    E   +F  +  E  +P +YT 
Sbjct: 167 YAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTM 226

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
             V+ AC+ + S+ +G  +H +VI+ G+  + F+  +++D+Y K  E+  AR++FDE+  
Sbjct: 227 ASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGF 286

Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFD------LMPERSNVSWNALIGGLVKIGDLRSAR 253
            ++V WT MIVGY   G  ++A  +F       ++P  ++V+   ++    ++ +L   R
Sbjct: 287 VDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVP--NSVTIATVLSASAQLRNLSLGR 344

Query: 254 QLFDEMPER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
            L   M  +     N V    ++D YAK   ++ A  +F    ++DVV W++LI+GY +N
Sbjct: 345 -LIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVEN 403

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
              +EA+ +FS M  +   PD   +V+ +SAC  +G+L +     +Y  +    LS  +V
Sbjct: 404 DMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAF-LSNVYV 462

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
             AL+++  KC ++  A  +F  M  R+ V++ +MI G  + G    ++ L ++ML + +
Sbjct: 463 NTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNI 522

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P+EV FT +L+ CSH G+V  G   F++M   + I PS +HYACMVD+L R G+L+ A 
Sbjct: 523 QPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEAL 582

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           E +  MP+    S WGA L  CKL+S +E GE   NR+  L P     YVL+SN+Y +  
Sbjct: 583 EFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYG 642

Query: 549 RWLDVCLVRSKMKERGLRKIPGCSSL 574
           RW     +R  M+ERGL K+PGCSS+
Sbjct: 643 RWDKSLAIRRLMQERGLVKLPGCSSV 668



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 175/355 (49%), Gaps = 14/355 (3%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           ++ AC+ + S+R   A+HA ++  G+   +   T L+  Y    +++ AR+V DE P  +
Sbjct: 29  LLPACATLPSLR---ALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPD 85

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLM----PERSN--VSWNALIGGLVKIGDLRSARQL 255
             ++   +  +A+ G   +A  +   M    PE  +  V  +  +   V+  D R  R+L
Sbjct: 86  PYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRL 145

Query: 256 FDEMPERNVVSYTTM---IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
                +        M   +D YAK GD+ +AR +F+    R+VV+W++++SG  QNG  +
Sbjct: 146 HCNAVKAGGADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAE 205

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           E + +F++M  + V P E+ + S++ AC+ +G+L    WV   + +  M  +   + AA+
Sbjct: 206 EGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFN-PFITAAV 264

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           +DM  KCG ++ A  LF+ +   D+V + +MI G + +G    A+ LF       + P+ 
Sbjct: 265 LDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNS 324

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
           V    VL+A + +  +  G R   AM     ++ +      +VD+  +   L  A
Sbjct: 325 VTIATVLSASAQLRNLSLG-RLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEA 378


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 173/548 (31%), Positives = 302/548 (55%), Gaps = 18/548 (3%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           SCLL  +T +  C     +   H +++K G     ++    IS  ++ +  +  +  VF+
Sbjct: 414 SCLLKCITCLS-CARDGLV--AHGYLVKLGFGTQCAVCNALISF-YAKSNMIDNAVLVFD 469

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           R+ + +T  WN+++ G + N    E   +FVR+  +    D  T   V+ AC+       
Sbjct: 470 RMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFV 529

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H   ++ G+  +  +  +L+D+Y    +     ++F  M ++NVVSWTAMI  Y  
Sbjct: 530 GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTR 589

Query: 215 VG------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNV 264
            G       L++   +  + P+   V+  +++ G      L+  + +         E+ +
Sbjct: 590 AGLFDKVAGLLQEMVLDGIKPDVFAVT--SVLHGFAGDESLKQGKSVHGYAIRNGMEKLL 647

Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
                +++ Y    +M  AR +F+   ++D+++W+ LI GY++N   +E+  +FSDM  +
Sbjct: 648 PVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ 707

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
             +P+   +  ++ A + + +L+    + +Y  R    L  ++   ALVDM  KCG +  
Sbjct: 708 -FKPNTVTMTCILPAVASISSLERGREIHAYALRRGF-LEDSYTSNALVDMYVKCGALLV 765

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  LF+ +  ++++S+  MI G  +HG G+ AV+LF++M   G+ PD  +F+ +L AC H
Sbjct: 766 ARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCH 825

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            GL  +GW+FF AM+  Y I P  +HY C+VDLL  TG+LK A+E + SMP+EP +S W 
Sbjct: 826 SGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWV 885

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           +LL  C+++ D++L E VA+R+F+LEP+N G YVLL+NIYA A+RW  V  +++K+  RG
Sbjct: 886 SLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRG 945

Query: 565 LRKIPGCS 572
           LR+  GCS
Sbjct: 946 LRENTGCS 953



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 178/380 (46%), Gaps = 38/380 (10%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           +W +L+  Y++   F E  ++F ++      PD +    V+K  + + S+ EG  IH  +
Sbjct: 165 VWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLL 224

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------ 216
            + G+ E   V  +LI LY +   +  A +VFD M  R+ +SW + I GY S G      
Sbjct: 225 EKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAV 284

Query: 217 DL----------VEAKTVFDLMPERSNVSWNALIGGLVK--------IGDLRSARQLFDE 258
           DL          + + TV  ++P  + + +  L+G +V         + DL S +   DE
Sbjct: 285 DLFSKMWSEGTEISSVTVLSVLPACAELGFE-LVGKVVHGYSMKSGLLWDLESVQSGIDE 343

Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKI 317
                +V        Y K GDM SAR +F+A P + +V  W+ ++ GYA+  + +E++ +
Sbjct: 344 ALGSKLVFM------YVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M    + PDE  L  L+   + +           YL +     ++  V  AL+   A
Sbjct: 398 FEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFG-TQCAVCNALISFYA 456

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437
           K   +D A  +F+ MP++D +S+ S+I G + +G   +A+ LF RM  +G   D      
Sbjct: 457 KSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLS 516

Query: 438 VLTACSH-----VGLVEDGW 452
           VL AC+      VG V  G+
Sbjct: 517 VLPACARSHYWFVGRVVHGY 536



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 171/360 (47%), Gaps = 10/360 (2%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N  +WN ++ GY++ + F E   +F ++      PD++    ++K  + +   R+G   H
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAH 433

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +++ G      V  +LI  Y K   I  A  VFD MP ++ +SW ++I G  S G   
Sbjct: 434 GYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNS 493

Query: 220 EAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT----MI 271
           EA  +F  M     E  + +  +++    +       R +     +  ++  T+    ++
Sbjct: 494 EAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALL 553

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y+   D  S   +F     ++VV+W+A+I+ Y + G  D+   +  +M    ++PD F
Sbjct: 554 DMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVF 613

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            + S++   +   +L     V  Y  R+ M+     V  AL++M   C NM+ A  +F+ 
Sbjct: 614 AVTSVLHGFAGDESLKQGKSVHGYAIRNGME-KLLPVANALMEMYVNCRNMEEARLVFDH 672

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + N+D++S+ ++I G S +    ++ SLF  ML +   P+ V  T +L A + +  +E G
Sbjct: 673 VTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERG 731



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 191/412 (46%), Gaps = 34/412 (8%)

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV--FVGTSLIDLYG 182
           +RL+  +      ++  V++ C    S+      HA ++R G    +   +G  L+  Y 
Sbjct: 83  LRLLGSDGGVGVRSYCAVVQLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYL 141

Query: 183 KRKEISCARKVFDEMPER--NVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNV 234
           K  ++  AR VFDEMP R  +V  WT+++  YA  GD  E  ++F  M      P+   V
Sbjct: 142 KCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAV 201

Query: 235 SWN-ALIGGLVKIGDLRSARQLFDEMPERNVVSY-TTMIDGYAKVGDMTSARSLFEAAPD 292
           S     I  L  I +      L +++      +    +I  Y++ G M  A  +F++   
Sbjct: 202 SCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHA 261

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           RD ++W++ ISGY  NG  D AV +FS M S+  +     ++S++ AC+++G   +   V
Sbjct: 262 RDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVV 321

Query: 353 DSYLSRSHM--DLSRAH------VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
             Y  +S +  DL          + + LV M  KCG+M  A  +F+ MP++  V   ++I
Sbjct: 322 HGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLI 381

Query: 405 -KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT-----ACSHVGLVEDGWRFFEAM 458
             G +      +++ LF++M   G+TPDE A + +L      +C+  GLV  G+      
Sbjct: 382 MGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGF 441

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
               A+  +      ++    ++  + +A  + + MP +   S W +++  C
Sbjct: 442 GTQCAVCNA------LISFYAKSNMIDNAVLVFDRMPHQDTIS-WNSVISGC 486



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 184/404 (45%), Gaps = 24/404 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  + K GL +  ++    I+L +S    +  +  VF+ +   +   WN+ + GY  N 
Sbjct: 220 IHGLLEKLGLGEACAVANALIAL-YSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACS-----------HVLSVREGTAIHAAVIR 164
                  +F ++  E       T   V+ AC+           H  S++ G       ++
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDLVEAKT 223
            G+DE   +G+ L+ +Y K  ++  AR+VFD MP + NV  W  ++ GYA   +  E+  
Sbjct: 339 SGIDEA--LGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLL 396

Query: 224 VFDLMPERSNVSWNALIGGLVK-IGDLRSARQLFDEMPERNVVSYTT-------MIDGYA 275
           +F+ M E         +  L+K I  L  AR           + + T       +I  YA
Sbjct: 397 LFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYA 456

Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
           K   + +A  +F+  P +D ++W+++ISG   NG   EA+++F  M  +  + D   L+S
Sbjct: 457 KSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLS 516

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
           ++ AC++     +   V  Y  ++ + +    +  AL+DM + C +     ++F  M  +
Sbjct: 517 VLPACARSHYWFVGRVVHGYSVKTGL-IGETSLANALLDMYSNCSDWHSTNQIFRNMAQK 575

Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           +VVS+ +MI   +  G   +   L   M+ +G+ PD  A T VL
Sbjct: 576 NVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 13/271 (4%)

Query: 270 MIDGYAKVGDMTSARSLFEAAPDR--DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           ++  Y K GD+  AR +F+  P R  DV  W++L+S YA+ G   E V +F  M    V 
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAA 386
           PD   +  ++   + +G++     +   L +  + L  A  +A AL+ + ++CG M+ A 
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEK--LGLGEACAVANALIALYSRCGCMEDAM 253

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-- 444
           ++F++M  RD +S+ S I G   +G   +AV LF +M SEG     V    VL AC+   
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313

Query: 445 ---VGLVEDGWRFFEAMQNVYAIVPSPEHYAC---MVDLLGRTGHLKSAYELLNSMPVEP 498
              VG V  G+     +      V S    A    +V +  + G + SA  + ++MP + 
Sbjct: 314 FELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG 373

Query: 499 HASAWGALLGACKLYSDIELGELVANRLFEL 529
           +   W  ++G     ++ E   L+  ++ EL
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 300/539 (55%), Gaps = 25/539 (4%)

Query: 52  HLHQVHSHIIKKGL--EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
           HL Q+H  ++   +   +    ++  +  C + AT   Y+  +  ++   +  LW++L+ 
Sbjct: 16  HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIG 75

Query: 110 ----GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT--AIHAAVI 163
               G + N R    F  +  + R   +P ++TFP ++KA   V  +R+      HA ++
Sbjct: 76  HFSGGITLNRRL--SFLAYRHMRRNGVIPSRHTFPPLLKA---VFKLRDSNPFQFHAHIV 130

Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
           ++G+D D FV  SLI  Y        A ++FD   +++VV+WTAMI G+   G   EA  
Sbjct: 131 KFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMV 190

Query: 224 VFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDG 273
            F  M +++ V+ N     +++    K+ D+R  R +     E      +V   ++++D 
Sbjct: 191 YFVEM-KKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM 249

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y K      A+ +F+  P R+VV W+ALI+GY Q+   D+ + +F +M   +V P+E  L
Sbjct: 250 YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTL 309

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
            S++SAC+ VG L     V  Y+ ++ ++++       L+D+  KCG ++ A  +FE + 
Sbjct: 310 SSVLSACAHVGALHRGRRVHCYMIKNSIEINTT-AGTTLIDLYVKCGCLEEAILVFERLH 368

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++V ++ +MI G + HG+ R A  LF  MLS  ++P+EV F  VL+AC+H GLVE+G R
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F +M+  + +    +HYACMVDL GR G L+ A  L+  MP+EP    WGAL G+C L+
Sbjct: 429 LFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLH 488

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            D ELG+  A+R+ +L+P ++G Y LL+N+Y+ +  W +V  VR +MK++ + K PG S
Sbjct: 489 KDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFS 547


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 168/444 (37%), Positives = 265/444 (59%), Gaps = 18/444 (4%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           ++K C+H+  + EG  IHA ++     +D+ +  +L++LY K  ++  ARK+FDEM  R+
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPER-------SNVSWNALIGGLVKIG--DLRSA 252
           VV+WTA+I GY+        +    L+PE        +  +  +L+     +G  D+   
Sbjct: 81  VVTWTALITGYSQHD---RPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQG 137

Query: 253 RQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308
           RQL         + NV     ++D YA+   +  A+ +F+    ++ V+W+ALI+GYA+ 
Sbjct: 138 RQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARK 197

Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           GQ D+A  +FS+M  +NV+P  F   S++ AC+ +G+L+   WV + + +    L  A V
Sbjct: 198 GQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV-AFV 256

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
              L+DM AK G+++ A ++F+ +  RDVVS+ SM+ G S HG G+ A+  F+ ML   +
Sbjct: 257 GNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRI 316

Query: 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
            P+++ F  VLTACSH GL+++G  +F+ M+  Y + P   HY  MVDLLGR GHL  A 
Sbjct: 317 APNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAI 375

Query: 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548
           + ++ MP++P A+ WGALLGAC+++ ++ELG   A  +FEL+    G++VLL NIYA A 
Sbjct: 376 QFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAG 435

Query: 549 RWLDVCLVRSKMKERGLRKIPGCS 572
           RW D   VR  MKE G++K P CS
Sbjct: 436 RWNDAAKVRKMMKESGVKKEPACS 459



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 209/404 (51%), Gaps = 30/404 (7%)

Query: 42  TLIKKCKLQTHLHQ------VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNR 95
           TL+K+C   THL++      +H+ ++      D  +    ++L ++    L Y+  +F+ 
Sbjct: 20  TLLKRC---THLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNL-YAKCGDLVYARKLFDE 75

Query: 96  IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS--VR 153
           + + +   W  L+ GYSQ+ R  +   +   ++R    P+++T   ++KA S V S  V 
Sbjct: 76  MSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVL 135

Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           +G  +H   +R+G D +V+V  +++D+Y +   +  A+ +FD M  +N VSW A+I GYA
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYA 195

Query: 214 SVGDLVEAKTVFDLMPERSNV-----SWNALIGGLVKIGDLRSARQLFDEMPE--RNVVS 266
             G   +A  +F  M  R NV     ++++++     +G L   + +   M +    +V+
Sbjct: 196 RKGQGDKAFCLFSNML-RENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVA 254

Query: 267 Y--TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
           +   T++D YAK G +  A+ +F+    RDVV+W+++++GY+Q+G    A++ F +M   
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRT 314

Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
            + P++   + +++ACS  G LD        + + +++   +H +  +VD+  + G++DR
Sbjct: 315 RIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYV-TMVDLLGRAGHLDR 373

Query: 385 AAELFETMPNR-------DVVSYCSMIKGLSIHGHGRQAVSLFD 421
           A +    MP +        ++  C M K + + G+  + +   D
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELD 417


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 275/529 (51%), Gaps = 15/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++K G   D  L  + I + ++    L  +  VF+ +   N   W  L+ G+  +
Sbjct: 25  QLHAALMKLGFGSDTMLNNNLIDM-YAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHH 83

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +      P+++T    +KAC      R G  IH   +R G +    V 
Sbjct: 84  GEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVA 141

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
            SL+ +Y K +    AR+VFD +P RN+ +W +MI GYA  G   ++  VF  M  R + 
Sbjct: 142 NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDE 201

Query: 234 ----VSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMIDGYAKVGDMTSA 283
                ++ +L+     +G  R   Q+   M      P  N +    ++D Y K   +  A
Sbjct: 202 QPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVA 261

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F+    R+ + W+ +I G+AQ GQ  EA+ +F    S  V+ D  +L S+++  +  
Sbjct: 262 MQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADF 321

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             ++    V  Y +++   L    V  +LVDM  KCG    A   F  MP R+VVS+ +M
Sbjct: 322 ALVEQGKQVHCYTAKTPAGLD-VSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 380

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G+  HGHGR+A+ LF+ M +EG+  DEVA+  +L+ACSH GLV++  R+F  +     
Sbjct: 381 INGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 440

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           + P  EHYACMVDLLGR G L+ A EL+ SMP+EP    W  LL AC+++ D+ +G  V 
Sbjct: 441 MRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVG 500

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + L  ++  N  +YV+LSNI A A  W +   +R  M+ +GLRK  GCS
Sbjct: 501 DVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCS 549



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 195/417 (46%), Gaps = 55/417 (13%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++A +   S+R G  +HAA+++ G   D  +  +LID+Y K  ++  A +VFD MPERN
Sbjct: 10  LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 69

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI--GDLRSARQLFD-- 257
           VVSWTA++VG+   G+  E   +F  M           +   +K   G  R+  Q+    
Sbjct: 70  VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVC 129

Query: 258 --EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
                E + V   +++  Y+K      AR +F+  P R++  W+++ISGYA  GQ  +++
Sbjct: 130 VRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSL 189

Query: 316 KIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS-RSHMDLSRAHVIAALV 373
            +F +M  + + QPDEF   SL+ ACS +G       V + ++ R     S A +  AL+
Sbjct: 190 LVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALL 249

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           D+  KC  +  A ++F+ +  R+ + + ++I G +  G  ++A+ LF R  S G+  D  
Sbjct: 250 DVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGH 309

Query: 434 AFTIVLTACSHVGLVEDG-----------------------------------WRFFEAM 458
             + V+   +   LVE G                                    R F  M
Sbjct: 310 VLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM 369

Query: 459 --QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---VEPHASAWGALLGAC 510
             +NV +       +  M++ +G+ GH + A +L   M    VE    A+ ALL AC
Sbjct: 370 PARNVVS-------WTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSAC 419


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 290/533 (54%), Gaps = 64/533 (12%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLC-HSLATPLSYSTAVFNRIVNP 99
           L L++ C     L  +H+H+++  L  D    +  I+ C  S    L Y+  V ++I NP
Sbjct: 21  LVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNP 80

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N F                 ++   +R       P+  +F   IKA              
Sbjct: 81  NLF-----------------IYNALIRGCSTSENPEN-SFHYYIKA-------------- 108

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
              +R+G+  D      L+         +CA+   +  P           +G  + G  +
Sbjct: 109 ---LRFGLLPDNITHPFLVK--------ACAQ--LENAP-----------MGMQTHGQAI 144

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           +     D   +      N+L+     +GD+ +AR +F  M   +VVS+T MI GY + GD
Sbjct: 145 KHGFEQDFYVQ------NSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGD 198

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
             SAR LF+  P+R++V WS +ISGYA+N   ++AV+ F  + ++ V  +E ++V ++S+
Sbjct: 199 AKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISS 258

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           C+ +G L +      Y+ R+ + L+   +  A+VDM A+CGN+++A  +FE +P +DV+ 
Sbjct: 259 CAHLGALAMGEKAHEYVMRNKLSLNLI-LGTAVVDMYARCGNVEKAVMVFEQLPEKDVLC 317

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           + ++I GL++HG+  +A+  F  M  +G  P ++ FT VLTACSH G+VE G   FE+M+
Sbjct: 318 WTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMK 377

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
             + + P  EHY CMVDLLGR G L+ A + +  MPV+P+A  W ALLGAC+++ ++E+G
Sbjct: 378 RDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVG 437

Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           E V   L E++P+ +G YVLLSNIYA A++W DV ++R  MK++G+RK PG S
Sbjct: 438 ERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYS 490


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 276/491 (56%), Gaps = 12/491 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   WNT++ GY +N        +F +++      D  +   V+ AC ++  
Sbjct: 179 VFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKE 238

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  V    + + + V  +L+D+Y K   +  AR VFD M ER+VVSWT+MI G
Sbjct: 239 LEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMING 297

Query: 212 YASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFD-EMPER---N 263
           Y   GD   A ++F +M       ++V+   ++     + +L+  R L    M +R    
Sbjct: 298 YILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSE 357

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           V   T++ID YAK   +  + S+F     +  V W+AL+SG   N    EA+ +F  M  
Sbjct: 358 VAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLM 417

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + V+ +     SL+ A   + +L   N ++SYL RS   +S   V  +L+D+ +KCG+++
Sbjct: 418 EGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGF-VSNIQVATSLIDIYSKCGSLE 476

Query: 384 RAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
            A ++F T+P   +D+  +  +I G  +HGHG  AVSLF +M+  G+ P++V FT VL +
Sbjct: 477 SAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQS 536

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
           CSH G+V+DG   F+ M   +  +P+ +HY CMVDLLGR G +  AY+L+ +MP  P  +
Sbjct: 537 CSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHA 596

Query: 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
            WGALLGAC ++ ++ELGE+ A  LFELEP N G+YVLL+ +YA   RW D   VR +M 
Sbjct: 597 VWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMD 656

Query: 562 ERGLRKIPGCS 572
           + GLRK P  S
Sbjct: 657 DIGLRKAPAHS 667



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 232/483 (48%), Gaps = 30/483 (6%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGL---EQDHSLVAHFISLCHSLATPLSY 88
           PK +   S L      +  T   Q+H+H+I  GL   +    LVA +    +     +  
Sbjct: 19  PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGY-----VHN 73

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI-REEAVPDKYTFPLVIKACS 147
           +  +F+ +    T L+N ++K Y     + E   +F+ ++  ++  PD YT+P VIKACS
Sbjct: 74  ARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACS 133

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +L V  G  +H   +       +FV  SL+ +Y    E+  ARKVFD M E++VVSW  
Sbjct: 134 ELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNT 193

Query: 208 MIVGYASVGDLVEAKTVFDLMPER-------SNVSWNALIGGLVKIGDLRSARQLFDEMP 260
           MI GY   G    A  VF+ M +        S VS     G L ++   R    L +E  
Sbjct: 194 MINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKV 253

Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320
               +    ++D YAK G M  AR +F+   +RDVV+W+++I+GY  NG    A+ +F  
Sbjct: 254 LGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKI 313

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
           M  + ++P+   +  ++ AC+ + NL     +  ++ +  +  S   V  +L+DM AKC 
Sbjct: 314 MQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRL-YSEVAVETSLIDMYAKCN 372

Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
            +  +  +F     +  V + +++ G   +    +A+ LF +ML EG+  +      +L 
Sbjct: 373 CLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLP 432

Query: 441 ACSHVGLVEDGWRFFEAMQNVYA------IVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           A    G++ D     + + N+ +       V + +    ++D+  + G L+SA+++ N++
Sbjct: 433 A---YGILAD----LQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTI 485

Query: 495 PVE 497
           PV+
Sbjct: 486 PVD 488


>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
          Length = 1302

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 264/472 (55%), Gaps = 21/472 (4%)

Query: 104  WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
            WN ++K         +    +V + R     D +TFP+++KA S + S   G A+H   +
Sbjct: 826  WNRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAM 885

Query: 164  RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
            + G     FVGT+L+D+Y     I  A KVF+EM  ++VV W +M+  YAS G +  A  
Sbjct: 886  KTGFSGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMK 945

Query: 224  VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSA 283
            +FD MP +   S+N +I G  KIG   +AR +FD +  +++VS+ +MI     VGDM +A
Sbjct: 946  LFDNMPLKDLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 1005

Query: 284  RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
            R+LF+  P ++                   AV +F +M + N + D   +  ++SAC+ +
Sbjct: 1006 RNLFDVMPKKN-------------------AVDLFDEMKAGNHEADHLTVALVLSACAHL 1046

Query: 344  GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
            G L     +  Y ++ H   S  HV  +L+DM AKCG + R+ E+F     +D+  + ++
Sbjct: 1047 GWLGKGTEMHVY-AQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAI 1105

Query: 404  IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
            I GL++HG+G  AV L D+M   G+ PDE+ F  +L+ACSH  LV++G R F+ M+  + 
Sbjct: 1106 ISGLALHGYGHAAVKLLDKMRDNGIRPDEITFIGLLSACSHGSLVQEGCRLFDCMEKEFG 1165

Query: 464  IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
            + P  EHY CMVDLLGR G L  A++L+ +MP EP  S  GALLGAC ++ D+E GE V 
Sbjct: 1166 LPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVI 1225

Query: 524  NRLF-ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
            B +  +    + G +++  N+YA+  +W +    R +M E G+ K  G S++
Sbjct: 1226 BLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTI 1277



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 10/204 (4%)

Query: 292  DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
            D  +  W+ +I      G PD+A+  + +M       D F    L+ A S + +  +   
Sbjct: 820  DSGLQRWNRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFA 879

Query: 352  VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
            +     ++        V  AL+DM    G +D A ++FE M  +DVV + SM+   +  G
Sbjct: 880  LHGQAMKTGFS-GHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXG 938

Query: 412  HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
                A+ LFD M  +    D  +F I+++  + +G        F+ +     +  +    
Sbjct: 939  QMDNAMKLFDNMPLK----DLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMIL 994

Query: 472  ACMVDLLGRTGHLKSAYELLNSMP 495
            AC        G + +A  L + MP
Sbjct: 995  ACT-----NVGDMGNARNLFDVMP 1013


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 286/527 (54%), Gaps = 11/527 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++HSH    GLE D  +    +   ++    L  +  +F+ + + +   WN ++ G S  
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDF-YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   + +++  E   P+  T   V+       ++  G A+H   +R   D  V VG
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           T L+D+Y K + +  ARK+FD M  RN VSW+AMI GY +   + EA  +FD M  +   
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAM 308

Query: 232 --SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARS 285
             + V+  +++    K+ DL   R+L   + +     +++   T++  YAK G +  A  
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            F+    +D V++SA++SG  QNG    A+ IF  M    + PD   ++ ++ ACS +  
Sbjct: 369 FFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L        YL       +   +  AL+DM +KCG +  A E+F  M   D+VS+ +MI 
Sbjct: 429 LQHGFCSHGYLIVRGFA-TDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMII 487

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G  IHG G +A+ LF  +L+ GL PD++ F  +L++CSH GLV +G  +F+AM   ++IV
Sbjct: 488 GYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIV 547

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH  CMVD+LGR G +  A+  + +MP EP    W ALL AC+++ +IELGE V+ +
Sbjct: 548 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKK 607

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  L P++ G++VLLSNIY+ A RW D   +R   K+ GL+KIPGCS
Sbjct: 608 IQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCS 654



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 250/499 (50%), Gaps = 33/499 (6%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
           P+ F   +  L  L    + K  T   ++H H +K     D S V H ++  +     + 
Sbjct: 2   PLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSS-VLHKLTRLYLSCNQVV 60

Query: 88  YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
            +  +F+ I NP+  LWN +++ Y+ N  F     ++  ++     P+KYT+P V+KACS
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
            +L++ +G  IH+    +G++ DVFV T+L+D Y K   +  A+++F  M  R+VV+W A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 208 MIVGYASVGDLVEA-KTVFDLMPERSNVSWNALIGGLVKIGDLRS-----------ARQL 255
           MI G +  G   +A + +  +  E    + + ++G L  +G+ ++            R+ 
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
           FD      VV  T ++D YAK   +  AR +F+    R+ V+WSA+I GY  +    EA+
Sbjct: 241 FDN----GVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEAL 296

Query: 316 KIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR--SHMDLSRAHVIAAL 372
           ++F  M  K+ + P    L S++ AC+++ +L     +  Y+ +  S +D+   +    L
Sbjct: 297 ELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGN---TL 353

Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
           + M AKCG +D A   F+ M  +D VS+ +++ G   +G+   A+S+F  M   G+ PD 
Sbjct: 354 LSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDL 413

Query: 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP--SPEHYAC--MVDLLGRTGHLKSAY 488
                VL ACSH+  ++ G+       + Y IV   + +   C  ++D+  + G +  A 
Sbjct: 414 TTMLGVLPACSHLAALQHGF-----CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAR 468

Query: 489 ELLNSMPVEPHASAWGALL 507
           E+ N M      S W A++
Sbjct: 469 EVFNRMDRHDIVS-WNAMI 486


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 186/530 (35%), Positives = 298/530 (56%), Gaps = 17/530 (3%)

Query: 55   QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
            Q+H  +++ GL+Q  S+    I++ +     +S +  VF ++   +   WNT++ G + +
Sbjct: 927  QIHGIVVRSGLDQVVSVGNCLINM-YVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 115  SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS-VREGTAIHAAVIRWGVDEDVFV 173
                    +FV L+R   +PD++T   V++ACS +       T IHA  ++ GV  D FV
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 174  GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--- 230
             T+LID+Y K  ++  A  +F      ++ SW AM+ GY   GD  +A  ++ LM E   
Sbjct: 1046 STTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE 1105

Query: 231  RSN----VSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTS 282
            R+N     +     GGLV    L+  +Q+   + +R    ++   + ++D Y K G+M S
Sbjct: 1106 RANQITLANAAKAAGGLV---GLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMES 1162

Query: 283  ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
            AR +F   P  D VAW+ +ISG  +NGQ + A+  +  M    VQPDE+   +L+ ACS 
Sbjct: 1163 ARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSL 1222

Query: 343  VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            +  L+    + +   + +       V+ +LVDM AKCGN++ A  LF+      + S+ +
Sbjct: 1223 LTALEQGRQIHANTVKLNCAFD-PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNA 1281

Query: 403  MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
            MI GL+ HG+  +A+  F+ M S G+TPD V F  VL+ACSH GLV + +  F +MQ +Y
Sbjct: 1282 MIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIY 1341

Query: 463  AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
             I P  EHY+C+VD L R G ++ A ++++SMP E  AS +  LL AC++  D E G+ V
Sbjct: 1342 GIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRV 1401

Query: 523  ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            A +L  LEP ++ +YVLLSN+YA A++W +V   R+ M++  ++K PG S
Sbjct: 1402 AEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFS 1451



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 199/444 (44%), Gaps = 17/444 (3%)

Query: 87   SYSTAVF---NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
            +Y T +F   +     +   WN  L  + Q     E    FV +I      D  TF +++
Sbjct: 854  AYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVML 913

Query: 144  KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
               + +  +  G  IH  V+R G+D+ V VG  LI++Y K   +S AR VF +M E ++V
Sbjct: 914  SVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLV 973

Query: 204  SWTAMIVGYA-------SVG---DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSAR 253
            SW  MI G A       SVG   DL+    + D     S +   + +GG   +     A 
Sbjct: 974  SWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHAC 1033

Query: 254  QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
             +   +   + VS TT+ID Y+K G M  A  LF      D+ +W+A++ GY  +G   +
Sbjct: 1034 AMKAGVVLDSFVS-TTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPK 1092

Query: 314  AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
            A++++  M     + ++  L +   A   +  L     + + + +   +L    VI+ ++
Sbjct: 1093 ALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLD-LFVISGVL 1151

Query: 374  DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
            DM  KCG M+ A  +F  +P+ D V++ +MI G   +G    A+  +  M    + PDE 
Sbjct: 1152 DMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEY 1211

Query: 434  AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
             F  ++ ACS +  +E G R   A          P     +VD+  + G+++ A  L   
Sbjct: 1212 TFATLVKACSLLTALEQG-RQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR 1270

Query: 494  MPVEPHASAWGALLGACKLYSDIE 517
                  AS W A++     + + E
Sbjct: 1271 TNTSRIAS-WNAMIVGLAQHGNAE 1293



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 181/396 (45%), Gaps = 25/396 (6%)

Query: 55   QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT----FLWNTLLKG 110
            + H+ I+  G   D  L  + I++ +S    LS +  +F+    P+T      WN +L  
Sbjct: 647  RAHARILTSGHHPDRFLTNNLITM-YSKCGSLSSARKLFD--TTPDTSRDLVTWNAILSA 703

Query: 111  YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED 170
            ++  +R  + F +F  L R      ++T   V K C    S     ++H   ++ G+  D
Sbjct: 704  HADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWD 761

Query: 171  VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230
            VFV  +L+++Y K   I  AR +FD M  R+VV W  M+  Y   G   EA  +F     
Sbjct: 762  VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEF-N 820

Query: 231  RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
            R+ +  + +   L  +  +  ++Q   E   + + +Y T +  Y                
Sbjct: 821  RTGLRPDDVT--LCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDD------------DD 866

Query: 291  PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350
               DV+AW+  +S + Q G+  EAV  F DM +  V  D    V ++S  + +  L+L  
Sbjct: 867  DGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGK 926

Query: 351  WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
             +   + RS +D     V   L++M  K G++ RA  +F  M   D+VS+ +MI G ++ 
Sbjct: 927  QIHGIVVRSGLD-QVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 411  GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            G    +V +F  +L  GL PD+     VL ACS +G
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/561 (31%), Positives = 285/561 (50%), Gaps = 75/561 (13%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ +  VF  +   +   W  ++ G ++  RF E     + +  +   P ++T   V+ +
Sbjct: 114 LADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSS 173

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV--- 202
           C+   +   G  +H+ V++ G+   V V  S++++YGK  +   A  VF+ MP R+V   
Sbjct: 174 CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSW 233

Query: 203 ----------------------------VSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
                                       VSW AMI GY   G   +A  +F  M   S++
Sbjct: 234 NAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 293

Query: 235 S----------------------------------------WNALIGGLVKIGDLRSARQ 254
           +                                         NALI    K G + +AR+
Sbjct: 294 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 353

Query: 255 LFDEMPER--NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
           + D+  E   NV+S+T +++GY K+GDM SAR +F    +RDVVAW+A+I GY QNG+ D
Sbjct: 354 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 413

Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
           EA+ +F  M +   +P+ + L +++S C+ +  LD    +     RS ++ S + V  A+
Sbjct: 414 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERS-SSVSNAI 472

Query: 373 VDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           + M A+ G+   A  +F+ +   ++ +++ SMI  L+ HG G +AV LF+ ML  G+ PD
Sbjct: 473 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 532

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            + +  VL+ACSH G V +G R+++ ++N + I P   HYACMVDLL R G    A E +
Sbjct: 533 RITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFI 592

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             MPVEP A AWG+LL AC+++ + EL EL A +L  ++P N+G+Y  ++N+Y+   RW 
Sbjct: 593 RRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWS 652

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           D   +    KE+ +RK  G S
Sbjct: 653 DAARIWKARKEKAVRKETGFS 673



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 174/355 (49%), Gaps = 74/355 (20%)

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLM 228
           +VF   SL+ ++ K   ++ AR VF EMPER+ VSWT M+VG    G   EA KT+ D+ 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 229 PER--------SNV------------------------------SWNALIGGLVKIGDLR 250
            +         +NV                                N+++    K GD  
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +A  +F+ MP R+V S+  M+     +G M  A SLFE+ P R +V+W+A+I+GY QNG 
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 311 PDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
             +A+K+FS M  + ++ PDEF + S++SAC+ +GN+ +   V +Y+ R+ M  + + V 
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYN-SQVT 335

Query: 370 AALV----------------------DMN-----------AKCGNMDRAAELFETMPNRD 396
            AL+                      D+N            K G+M+ A E+F  M NRD
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           VV++ +MI G   +G   +A+ LF  M++ G  P+      VL+ C+ +  ++ G
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYG 450



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 47/311 (15%)

Query: 247 GDLRSARQLFDEMP--ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
           G LR AR+LFDE+P   RNV ++ +++  +AK G +  AR +F   P+RD V+W+ ++ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR------ 358
             + G+  EA+K   DM +    P +F L +++S+C+      +   V S++ +      
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 359 ------------------------SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
                                     M +       A+V +N   G MD A  LFE+MP 
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVGLVEDGWR 453
           R +VS+ +MI G + +G   +A+ LF RML E  + PDE   T VL+AC+++G V  G  
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG-- 316

Query: 454 FFEAMQNVYAIVPSPEH------YACMVDLLGRTGHLKSAYELLN-SMPVEPHASAWGAL 506
                + V+A +   E          ++    ++G +++A  +++ SM  + +  ++ AL
Sbjct: 317 -----KQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371

Query: 507 LGACKLYSDIE 517
           L       D+E
Sbjct: 372 LEGYVKIGDME 382



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 4/181 (2%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L + L++        +  Q+H   I+  LE+  S+    I++ ++ +    ++  
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITM-YARSGSFPWARR 487

Query: 92  VFNRIV-NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           +F+++     T  W +++   +Q+ +  E   +F  ++R    PD+ T+  V+ ACSH  
Sbjct: 488 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 547

Query: 151 SVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM 208
            V EG   +  +     +  ++     ++DL  +    S A++    MP E + ++W ++
Sbjct: 548 FVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSL 607

Query: 209 I 209
           +
Sbjct: 608 L 608


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 165/502 (32%), Positives = 275/502 (54%), Gaps = 46/502 (9%)

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ-NSRFIEVFTIFVRLIRE 130
           +A F+  C      L  +  VF ++    T  WNT+L GY++   +  E   +F ++   
Sbjct: 80  IASFVRAC-----DLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPE- 133

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
              PD  ++ +++     V  +R                           YG    +  A
Sbjct: 134 ---PDSVSYNIML-----VCYLRS--------------------------YG----VKAA 155

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
              F++MP +++ SW  +I G+A  G + +A  +F +MPE++ VSW+A+I G V+ GDL 
Sbjct: 156 LAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLE 215

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           +A +L+  +  ++VV  T M+ GY K G +  A  +F+    +++V W+++I+GY +N +
Sbjct: 216 AAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCR 275

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            ++ +K+F  M    V+P+   L S++  CS +  L L   +   +S+S +         
Sbjct: 276 AEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT-ACT 334

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           +L+ M  KCG++D A +LF  MP +DV+++ +MI G + HG GR+A+ LFD+M +  + P
Sbjct: 335 SLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKP 394

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           D + F  V+ AC+H G V+ G ++F++M+  + I   P HY C++DLLGR G L  A  L
Sbjct: 395 DWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           +  MP  PHA+ +G LLGAC+++ +++L E  A  L  L+P +A  YV L+NIYA  ++W
Sbjct: 455 IKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
             V  VR  MKE  + KIPG S
Sbjct: 515 DQVAKVRKMMKEHNVVKIPGYS 536



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 157/313 (50%), Gaps = 18/313 (5%)

Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-GDLRSARQLFDEM 259
           +VVS    I  +    DL  A+ VF+ M  R+ V+WN ++ G  K+ G ++ A +LFD++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           PE + VSY  M+  Y +   + +A + F   P +D+ +W+ LISG+AQNGQ  +A  +FS
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M  KN         +++S   + G+L+ +  +       ++ +    V  A++    K 
Sbjct: 192 VMPEKN----GVSWSAMISGYVEHGDLEAAEEL-----YKNVGMKSVVVETAMLTGYMKF 242

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G ++ A  +F+ M  +++V++ SMI G   +      + +F  M+   + P+ ++ + VL
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYAC--MVDLLGRTGHLKSAYELLNSMPV 496
             CS++  +  G      M  + +  P S +  AC  ++ +  + G L SA++L   MP 
Sbjct: 303 LGCSNLSALPLG----RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP- 357

Query: 497 EPHASAWGALLGA 509
                 W A++  
Sbjct: 358 RKDVITWNAMISG 370



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 176/363 (48%), Gaps = 19/363 (5%)

Query: 58  SHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117
           +H +   + +  S+  + + +C+  +  +  + A FN++   +   WNTL+ G++QN + 
Sbjct: 124 AHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQM 183

Query: 118 IEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
            + F +F  +  +  V    ++  +I        +     ++  V   G+ + V V T++
Sbjct: 184 QKAFDLFSVMPEKNGV----SWSAMISGYVEHGDLEAAEELYKNV---GM-KSVVVETAM 235

Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSN- 233
           +  Y K  ++  A ++F  M  +N+V+W +MI GY       +   VF  M E   R N 
Sbjct: 236 LTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNP 295

Query: 234 VSWNALIGGLVKIGDL---RSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEA 289
           +S ++++ G   +  L   R   QL  + P  ++  + T++I  Y K GD+ SA  LF  
Sbjct: 296 LSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLE 355

Query: 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
            P +DV+ W+A+ISGYAQ+G   +A+ +F  M +  ++PD    V+++ AC+  G +DL 
Sbjct: 356 MPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLG 415

Query: 350 -NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGL 407
             +  S      ++    H    ++D+  + G +D A  L + MP       Y +++   
Sbjct: 416 VQYFKSMKKEFGIEAKPVHY-TCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGAC 474

Query: 408 SIH 410
            IH
Sbjct: 475 RIH 477


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 275/529 (51%), Gaps = 15/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++K G   D  L  + I + ++    L  +  VF+ +   N   W  L+ G+  +
Sbjct: 221 QLHAALMKLGFGSDTMLNNNLIDM-YAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHH 279

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +      P+++T    +KAC      R G  IH   +R G +    V 
Sbjct: 280 GEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVA 337

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
            SL+ +Y K +    AR+VFD +P RN+ +W +MI GYA  G   ++  VF  M  R + 
Sbjct: 338 NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDE 397

Query: 234 ----VSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMIDGYAKVGDMTSA 283
                ++ +L+     +G  R   Q+   M      P  N +    ++D Y K   +  A
Sbjct: 398 QPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVA 457

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F+    R+ + W+ +I G+AQ GQ  EA+ +F    S  V+ D  +L S+++  +  
Sbjct: 458 MQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADF 517

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             ++    V  Y +++   L    V  +LVDM  KCG    A   F  MP R+VVS+ +M
Sbjct: 518 ALVEQGKQVHCYTAKTPAGLD-VSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 576

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G+  HGHGR+A+ LF+ M +EG+  DEVA+  +L+ACSH GLV++  R+F  +     
Sbjct: 577 INGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 636

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           + P  EHYACMVDLLGR G L+ A EL+ SMP+EP    W  LL AC+++ D+ +G  V 
Sbjct: 637 MRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVG 696

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + L  ++  N  +YV+LSNI A A  W +   +R  M+ +GLRK  GCS
Sbjct: 697 DVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCS 745



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 195/417 (46%), Gaps = 55/417 (13%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++A +   S+R G  +HAA+++ G   D  +  +LID+Y K  ++  A +VFD MPERN
Sbjct: 206 LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 265

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI--GDLRSARQLFD-- 257
           VVSWTA++VG+   G+  E   +F  M           +   +K   G  R+  Q+    
Sbjct: 266 VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVC 325

Query: 258 --EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
                E + V   +++  Y+K      AR +F+  P R++  W+++ISGYA  GQ  +++
Sbjct: 326 VRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSL 385

Query: 316 KIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS-RSHMDLSRAHVIAALV 373
            +F +M  + + QPDEF   SL+ ACS +G       V + ++ R     S A +  AL+
Sbjct: 386 LVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALL 445

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           D+  KC  +  A ++F+ +  R+ + + ++I G +  G  ++A+ LF R  S G+  D  
Sbjct: 446 DVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGH 505

Query: 434 AFTIVLTACSHVGLVEDG-----------------------------------WRFFEAM 458
             + V+   +   LVE G                                    R F  M
Sbjct: 506 VLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM 565

Query: 459 --QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---VEPHASAWGALLGAC 510
             +NV +       +  M++ +G+ GH + A +L   M    VE    A+ ALL AC
Sbjct: 566 PARNVVS-------WTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSAC 615


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 260/474 (54%), Gaps = 36/474 (7%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           +KY+F  +I  C     V+   A+H  +I+  +  D F+   LID Y K      A K F
Sbjct: 11  EKYSF--LISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTF 68

Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLV---------- 244
            ++P +   SW  +I  Y+  G   EA  +FD MP+R+ VS+N+LI G +          
Sbjct: 69  GDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVA 128

Query: 245 --------------------KIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
                               K G+   +  +F  MPERNVVS+T+M+  Y +   +  A 
Sbjct: 129 VIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEAC 188

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F+  P ++ V+W+AL++G+ +NG  DEA  +F  M  + V+P     VS++ AC+Q  
Sbjct: 189 RVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEA 248

Query: 345 NLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
            +     V   + R     +L   +V  AL+DM AKCG+M  A  LFE  P RDVV++ +
Sbjct: 249 LIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNT 308

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I G + +GHG +++++F RM+   + P+ V F  VL+ C+H GL  +G +  + M+  Y
Sbjct: 309 LITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQY 368

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP--VEPHASAWGALLGACKLYSDIELGE 520
            + P  EHYA ++DLLGR   L  A  L+  +P  ++ H + WGA+LGAC+++ +++L  
Sbjct: 369 GVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLAR 428

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             A +LFELEP+N G YV+L+NIYA + +W     +R+ MKER L K P CS +
Sbjct: 429 KAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRI 482



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 206/466 (44%), Gaps = 63/466 (13%)

Query: 19  MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
           MLPN   S+     K S L+S     ++ KL    + VH H+IK  L  D  L    I  
Sbjct: 1   MLPNDVISS---VEKYSFLISKCITARRVKLA---NAVHGHLIKTALFFDAFLANGLID- 53

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
            +S       +   F  + N  T  WNTL+  YS+   F E   +F ++ +   V    +
Sbjct: 54  AYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVV----S 109

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           +  +I      L       +H   +  G++ +V +  +LID YGK  E + +  VF  MP
Sbjct: 110 YNSLISGNLQWLR-----QVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMP 164

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
           ERNVVSWT+M+V Y     L EA  VF  MP ++ VSW AL+ G V+ G    A  +F +
Sbjct: 165 ERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQ 224

Query: 259 MPER------------------------------------------NVVSYTTMIDGYAK 276
           M E                                           NV     +ID YAK
Sbjct: 225 MLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAK 284

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
            GDM SA +LFE AP RDVV W+ LI+G+AQNG  +E++ +F  M    V+P+    + +
Sbjct: 285 CGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGV 344

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-- 394
           +S C+  G  +    +   + R +    +A   A L+D+  +   +  A  L E +P+  
Sbjct: 345 LSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGI 404

Query: 395 -RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
              +  + +++    +HG+   A    +++    L P+     ++L
Sbjct: 405 KNHIAVWGAVLGACRVHGNLDLARKAAEKLFE--LEPENTGRYVML 448


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 288/520 (55%), Gaps = 11/520 (2%)

Query: 54  HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ 113
            +VH  +IK G + D  +    I +   +   +  +  VF+ +   +   WN+++ GY  
Sbjct: 144 QKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF-IELAEKVFDEMPVRDLVSWNSMVSGYQI 202

Query: 114 NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
           +   +     F  ++R     D++     + ACS    +R G  IH  VIR  ++ D+ V
Sbjct: 203 DGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMV 262

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV-EAKTVFDLMPERS 232
            TSLID+YGK  ++  A +VF+ +  +N+V+W AMI G      ++ +  T+ +L+P  S
Sbjct: 263 QTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCS 322

Query: 233 NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD 292
                AL+ G    G   + R++F  +P   +V  T ++D Y K G++  A  +F    +
Sbjct: 323 QSG--ALLEGKSIHG--FAIRKMF--LPY--LVLETALVDMYGKCGELKLAEHVFNQMNE 374

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV 352
           +++V+W+ +++ Y QN Q  EA+K+F  + ++ ++PD   + S++ A +++ +      +
Sbjct: 375 KNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQI 434

Query: 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGH 412
            SY+ +  +  S   +  A+V M AKCG++  A E F+ M  +DVVS+ +MI   +IHG 
Sbjct: 435 HSYIMKLGLG-SNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGF 493

Query: 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
           GR ++  F  M  +G  P+   F  +LTACS  GL+++GW FF +M+  Y I P  EHY 
Sbjct: 494 GRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYG 553

Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532
           CM+DLLGR G+L  A   +  MP+ P A  WG+LL A + ++D+ L EL A  +  L+  
Sbjct: 554 CMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHD 613

Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N G YVLLSN+YA A RW DV  ++  MKE+GL K  GCS
Sbjct: 614 NTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCS 653



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 210/428 (49%), Gaps = 30/428 (7%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F ++ + +TF+WN +++GY+ N  F E    + R+  E    D +TFP VIKAC  +L+
Sbjct: 80  MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLA 139

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  +I+ G D DV+V   LID+Y K   I  A KVFDEMP R++VSW +M+ G
Sbjct: 140 LMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSG 199

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGD------LRSAR----QLFDEMPE 261
           Y   GD + +   F  M    N +     G +  +G       LRS      Q+     E
Sbjct: 200 YQIDGDGLSSLMCFKEMLRLGNKA--DRFGMISALGACSIEHCLRSGMEIHCQVIRSELE 257

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
            +++  T++ID Y K G +  A  +F     +++VAW+A+I G  ++ +           
Sbjct: 258 LDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDK----------- 306

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
               V PD   +++L+ +CSQ G L     +  +  R  M L    +  ALVDM  KCG 
Sbjct: 307 ----VIPDVITMINLLPSCSQSGALLEGKSIHGFAIRK-MFLPYLVLETALVDMYGKCGE 361

Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
           +  A  +F  M  +++VS+ +M+     +   ++A+ +F  +L+E L PD +    VL A
Sbjct: 362 LKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPA 421

Query: 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHAS 501
            + +    +G +    +  +  +  +      +V +  + G L++A E  + M V     
Sbjct: 422 VAELASRSEGKQIHSYIMKL-GLGSNTFISNAIVYMYAKCGDLQTAREFFDGM-VCKDVV 479

Query: 502 AWGALLGA 509
           +W  ++ A
Sbjct: 480 SWNTMIMA 487



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 149/328 (45%), Gaps = 26/328 (7%)

Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVK 245
           A  +F++M   +   W  +I GY + G   EA   +  M        N ++  +I    +
Sbjct: 77  ALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGE 136

Query: 246 IGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
           +  L   +++  ++     + +V     +ID Y K+G +  A  +F+  P RD+V+W+++
Sbjct: 137 LLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSM 196

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           +SGY  +G    ++  F +M     + D F ++S + ACS    L     +   + RS +
Sbjct: 197 VSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSEL 256

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           +L    V  +L+DM  KCG +D A  +F  + ++++V++ +MI G+              
Sbjct: 257 ELD-IMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQ------------- 302

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
               + + PD +    +L +CS  G + +G +           +P       +VD+ G+ 
Sbjct: 303 --EDDKVIPDVITMINLLPSCSQSGALLEG-KSIHGFAIRKMFLPYLVLETALVDMYGKC 359

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGA 509
           G LK A  + N M  E +  +W  ++ A
Sbjct: 360 GELKLAEHVFNQMN-EKNMVSWNTMVAA 386



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 13/264 (4%)

Query: 251 SARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
            ++  F  +   N ++ T  + G+ + G M +A  +FE     D   W+ +I GY  NG 
Sbjct: 45  QSKTSFKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGL 104

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
             EA+  +  M  + ++ D F    ++ AC ++  L +   V   L +   DL   +V  
Sbjct: 105 FQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLD-VYVCN 163

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
            L+DM  K G ++ A ++F+ MP RD+VS+ SM+ G  I G G  ++  F  ML  G   
Sbjct: 164 FLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKA 223

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV-----DLLGRTGHLK 485
           D       L ACS    +E   R    M+    ++ S      MV     D+ G+ G + 
Sbjct: 224 DRFGMISALGACS----IEHCLR--SGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVD 277

Query: 486 SAYELLNSMPVEPHASAWGALLGA 509
            A  + N +    +  AW A++G 
Sbjct: 278 YAERVFNRI-YSKNIVAWNAMIGG 300


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 300/581 (51%), Gaps = 90/581 (15%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           S L +  T++  C    H+ Q+H+ I+K      HSL    I  C++    L +S A FN
Sbjct: 10  SLLRNPNTVVPTC----HVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFN 65

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
                       LL+ +  +                   PD++ FP +++A +       
Sbjct: 66  ------------LLRSFGIS-------------------PDRHLFPSLLRASTLFKHFNL 94

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK----------------------EISCARK 192
             ++HAAVIR G   D++   +L+++Y K                        +I   RK
Sbjct: 95  AQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRK 154

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEA-------------------KTVFDLMPERSN 233
           +FD MP R+VVSW  +I G A  G   EA                    ++  +  E +N
Sbjct: 155 LFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHAN 214

Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           V+    I G        + R  FD    ++V   +++ID YAK   +  +   F    +R
Sbjct: 215 VTKGKEIHGY-------AIRHGFD----KDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR 263

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
           D ++W+++I+G  QNG+ D+ +  F  M  + V+P +    S++ AC+ +  L+L   + 
Sbjct: 264 DAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLH 323

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET--MPNRDVVSYCSMIKGLSIHG 411
           +Y+ R   D ++  + ++L+DM AKCGN+  A  +F    M +RD+VS+ ++I G ++HG
Sbjct: 324 AYIIRLGFDDNK-FIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHG 382

Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
           H   AVSLF+ ML +G+ P  VAF  VLTACSH GLV++GW++F +MQ  + + P  EHY
Sbjct: 383 HALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHY 442

Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531
           A + DLLGR G L+ AY+ +++M  EP  S W  LL AC+ + +IEL E V N++  ++P
Sbjct: 443 AAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDP 502

Query: 532 QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            N G++V++SNIY+ A RW D   +R +M++ GL+K P CS
Sbjct: 503 GNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACS 543



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 28/323 (8%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L S L +  +    T   ++H + I+ G ++D  + +  I + ++  T +  S  
Sbjct: 197 PDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDM-YAKCTQVELSVC 255

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
            F+ + N +   WN+++ G  QN RF +    F R+++E+  P + +F  VI AC+H+ +
Sbjct: 256 AFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTA 315

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMI 209
           +  G  +HA +IR G D++ F+ +SL+D+Y K   I  AR +F+  EM +R++VSWTA+I
Sbjct: 316 LNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAII 375

Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
           +G A  G  ++A ++F+ M          L+ G      ++     F  M      S+  
Sbjct: 376 MGCAMHGHALDAVSLFEEM----------LVDG------VKPCYVAF--MAVLTACSHAG 417

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++D   K     S +  F  AP  +  A  A + G A  G+ +EA    S+M     +P 
Sbjct: 418 LVDEGWKY--FNSMQRDFGVAPGLEHYAAVADLLGRA--GRLEEAYDFISNMGE---EPT 470

Query: 330 EFILVSLMSACSQVGNLDLSNWV 352
             +  +L++AC    N++L+  V
Sbjct: 471 GSVWSTLLAACRAHKNIELAEKV 493


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 274/529 (51%), Gaps = 15/529 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++K G   D  L  + I + ++    L  +  VF+ +   N   W  L+ G+  +
Sbjct: 25  QLHAALMKLGFGSDTMLNNNLIDM-YAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHH 83

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +      P+++T    +KAC      R G  IH   +R G +    V 
Sbjct: 84  GEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVA 141

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN- 233
            SL+ +Y K +    AR+VFD +P RN+ +W +MI GYA  G   ++  VF  M  R + 
Sbjct: 142 NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDE 201

Query: 234 ----VSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMIDGYAKVGDMTSA 283
                ++ +L+     +G  R   Q+   M      P  N +    ++D Y K   +  A
Sbjct: 202 QPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVA 261

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F+    R+ + W+ +I G+AQ GQ  EA+ +F    S  V+ D  +L S+++  +  
Sbjct: 262 MQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADF 321

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
             ++    V  Y +++   L    V  +LVDM  KCG    A   F  MP R+VVS+ +M
Sbjct: 322 ALVEQGKQVHCYTAKTPAGLD-VSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 380

Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
           I G+  HGHGR+A+ LF+ M  EG+  DEVA+  +L+ACSH GLV++  R+F  +     
Sbjct: 381 INGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 440

Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
           + P  EHYACMVDLLGR G L+ A EL+ SMP+EP    W  LL AC+++ D+ +G  V 
Sbjct: 441 MRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVG 500

Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           + L  ++  N  +YV+LSNI A A  W +   +R  M+ +GLRK  GCS
Sbjct: 501 DVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCS 549



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 195/417 (46%), Gaps = 55/417 (13%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           +++A +   S+R G  +HAA+++ G   D  +  +LID+Y K  ++  A +VFD MPERN
Sbjct: 10  LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERN 69

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI--GDLRSARQLFD-- 257
           VVSWTA++VG+   G+  E   +F  M           +   +K   G  R+  Q+    
Sbjct: 70  VVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVC 129

Query: 258 --EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
                E + V   +++  Y+K      AR +F+  P R++  W+++ISGYA  GQ  +++
Sbjct: 130 VRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSL 189

Query: 316 KIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS-RSHMDLSRAHVIAALV 373
            +F +M  + + QPDEF   SL+ ACS +G       V + ++ R     S A +  AL+
Sbjct: 190 LVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALL 249

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           D+  KC  +  A ++F+ +  R+ + + ++I G +  G  ++A+ LF R  S G+  D  
Sbjct: 250 DVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGH 309

Query: 434 AFTIVLTACSHVGLVEDG-----------------------------------WRFFEAM 458
             + V+   +   LVE G                                    R F  M
Sbjct: 310 VLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM 369

Query: 459 --QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---VEPHASAWGALLGAC 510
             +NV +       +  M++ +G+ GH + A +L   M    VE    A+ ALL AC
Sbjct: 370 PARNVVS-------WTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSAC 419


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 269/502 (53%), Gaps = 11/502 (2%)

Query: 79  CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYT 138
           C +  TP   +  VF+ +   N+  W T++ GY+      E   +F  + REE   +++ 
Sbjct: 154 CKAGLTP--EARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFV 211

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F  V+ A +    V  G  IH   ++ G+   V VG +L+ +Y K   +  A + F+   
Sbjct: 212 FTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSS 271

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQ 254
           ++N ++W+AMI GYA  GD  +A  +F  M       S  ++  +I     +G     +Q
Sbjct: 272 DKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQ 331

Query: 255 LFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
           + D +     E  +   T ++D YAK   +  AR  F+   + D+V W+++I GY QNG+
Sbjct: 332 VHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGE 391

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA 370
            ++A+ ++  M  + + P+E  + S++ ACS +  L+    + +   +    L    + +
Sbjct: 392 NEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL-EVPIGS 450

Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
           AL  M AKCG +     +F  MP RDV+S+ +MI GLS +G G++A+ LF+ M  EG  P
Sbjct: 451 ALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKP 510

Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
           D V F  +L+ACSH+GLVE GW +F  M + + + P  EHYACMVD+L R G LK A E 
Sbjct: 511 DYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEF 570

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
             S  ++     W  +LGAC+ Y + ELG     +L EL  Q + +YVLLS+IY+   RW
Sbjct: 571 TESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRW 630

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
            DV  VR  MK RG+ K PGCS
Sbjct: 631 EDVERVRRMMKLRGVSKEPGCS 652



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 232/462 (50%), Gaps = 15/462 (3%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN- 114
           +H+ IIK         +A+ +   ++    L  +  VF RI N +   WN ++ GYSQ+ 
Sbjct: 28  LHAQIIKS--SSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHG 85

Query: 115 -SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
            S    V  +F R+  E   P+ +TF  V  A S ++    G   HA  I+     DVFV
Sbjct: 86  PSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFV 145

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--- 230
           G+SL+++Y K      ARKVFD MPERN VSW  MI GYAS     EA  +F LM     
Sbjct: 146 GSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEE 205

Query: 231 -RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT----MIDGYAKVGDMTSARS 285
             +   + +++  L     + + +Q+     +  ++S  +    ++  YAK G +  A  
Sbjct: 206 GENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQ 265

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            FE + D++ + WSA+I+GYAQ+G  D+A+K+FS M    ++P EF  V +++ACS +G 
Sbjct: 266 TFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGA 325

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
                 V  YL +   + S+ +V+ ALVDM AKC ++  A + F+ +   D+V + SMI 
Sbjct: 326 AWEGKQVHDYLLKLGFE-SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG 384

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G   +G    A+SL+ RM  EG+ P+E+    VL ACS +  +E G +   A    Y   
Sbjct: 385 GYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQG-KQIHARTVKYGFG 443

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
                 + +  +  + G LK    +   MP     S W A++
Sbjct: 444 LEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS-WNAMI 484



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 38  LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           L+  +++K C     L Q   +H+  +K G   +   +   +S  ++    L   T VF 
Sbjct: 412 LTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVP-IGSALSTMYAKCGCLKDGTLVFR 470

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           R+   +   WN ++ G SQN    E   +F  +  E   PD  TF  ++ ACSH+  V  
Sbjct: 471 RMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVER 530

Query: 155 GTAIHAAVI-RWGVDEDVFVGTSLIDLY---GKRKE 186
           G      +   +G+D  V     ++D+    GK KE
Sbjct: 531 GWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKE 566


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 285/527 (54%), Gaps = 11/527 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++HSH    GLE D  +    +   ++    L  +  +F+ + + +   WN ++ G S  
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDF-YAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               +   + +++  E   P+  T   V+       ++  G A+H   +R   D  V VG
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
           T L+D+Y K + +  ARK+FD M  RN VSW+AMI GY     + EA  +FD M  +   
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAM 308

Query: 232 --SNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARS 285
             + V+  +++    K+ DL   R+L   + +     +++   T++  YAK G +  A  
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
            F+    +D V++SA++SG  QNG    A+ IF  M    + PD   ++ ++ ACS +  
Sbjct: 369 FFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L        YL       +   +  AL+DM +KCG +  A E+F  M   D+VS+ +MI 
Sbjct: 429 LQHGFCSHGYLIVRGFA-TDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMII 487

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
           G  IHG G +A+ LF  +L+ GL PD++ F  +L++CSH GLV +G  +F+AM   ++IV
Sbjct: 488 GYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIV 547

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P  EH  CMVD+LGR G +  A+  + +MP EP    W ALL AC+++ +IELGE V+ +
Sbjct: 548 PRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKK 607

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  L P++ G++VLLSNIY+ A RW D   +R   K+ GL+KIPGCS
Sbjct: 608 IQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCS 654



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 247/489 (50%), Gaps = 36/489 (7%)

Query: 41  LTLIKKC---KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97
           L L++ C   K  T   ++H H +K     D S V H ++  +     +  +  +F+ I 
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSS-VLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           NP+  LWN +++ Y+ N  F     ++  ++     P+KYT+P V+KACS +L++ +G  
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IH+    +G++ DVFV T+L+D Y K   +  A+++F  M  R+VV+W AMI G +  G 
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 218 LVEA-KTVFDLMPERSNVSWNALIGGLVKIGDLRS-----------ARQLFDEMPERNVV 265
             +A + +  +  E    + + ++G L  +G+ ++            R+ FD      VV
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN----GVV 246

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             T ++D YAK   +  AR +F+    R+ V+WSA+I GY  +    EA+++F  M  K+
Sbjct: 247 VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKD 306

Query: 326 -VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR--SHMDLSRAHVIAALVDMNAKCGNM 382
            + P    L S++ AC+++ +L     +  Y+ +    +D+   +    L+ M AKCG +
Sbjct: 307 AMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGN---TLLSMYAKCGVI 363

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           D A   F+ M  +D VS+ +++ G   +G+   A+S+F  M   G+ PD      VL AC
Sbjct: 364 DDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPAC 423

Query: 443 SHVGLVEDGWRFFEAMQNVYAIVP--SPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEP 498
           SH+  ++ G+       + Y IV   + +   C  ++D+  + G +  A E+ N M    
Sbjct: 424 SHLAALQHGF-----CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHD 478

Query: 499 HASAWGALL 507
             S W A++
Sbjct: 479 IVS-WNAMI 486


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 174/496 (35%), Positives = 275/496 (55%), Gaps = 10/496 (2%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ +  VF+ +   +   WN+++ GY Q   F E   +F+ +I     P   T   ++KA
Sbjct: 196 LADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKA 255

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C      + G   H+ V+  G+  DVFV TSL+D+Y    +   A  VFD M  R+++SW
Sbjct: 256 CGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISW 315

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQL----FD 257
            AMI GY   G + E+  +F  + +  +     +  +LI G  +  DL + R L      
Sbjct: 316 NAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIR 375

Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
           +  E ++V  T ++D Y+K G +  A  +F     ++V+ W+A++ G +QNG  ++A+K+
Sbjct: 376 KELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKL 435

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           F  M  + V  +   LVSL+  C+ +G+L     V ++  R H     A + +AL+DM A
Sbjct: 436 FCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIR-HGYAFDAVITSALIDMYA 494

Query: 378 KCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           KCG +  A +LF    + +DV+   SMI G  +HGHGR A+ ++ RM+ E L P++  F 
Sbjct: 495 KCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFV 554

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            +LTACSH GLVE+G   F +M+  + + P  +HYAC+VDL  R G L+ A EL+  MP 
Sbjct: 555 SLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPF 614

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           +P      ALL  C+ + +  +G  +A+RL  L+  N+G YV+LSNIYA A +W  V  +
Sbjct: 615 QPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYI 674

Query: 557 RSKMKERGLRKIPGCS 572
           R  M+ +G++KIPG S
Sbjct: 675 RGLMRMQGMKKIPGYS 690



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/511 (27%), Positives = 251/511 (49%), Gaps = 35/511 (6%)

Query: 4   IDEPNTPCKHKSCSSMLPNCS----RSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSH 59
            ++   PC  +   +  P+ +      AP     PS   S L       +  H+  +H+ 
Sbjct: 12  FEKARIPCNCRPIYNAAPSSTFVSVHHAPFFNQAPSVFSSLLHQFSNTLI--HVKSIHAQ 69

Query: 60  IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
           IIK  +  +  L A  I +   L   L ++  VF++   P T + N ++ G+ +N + +E
Sbjct: 70  IIKNWVSTESFLAAKLIRVYSDLGF-LGHARNVFDQCSLPETAVCNAMIAGFLRNQQHME 128

Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
           V  +F  +   +   + YT    +KAC+ +L    G  I  A +R G    ++VG+S+++
Sbjct: 129 VPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVN 188

Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSN 233
              KR  ++ A+KVFD MPE++VV W ++I GY   G   E+  +F       L P  S 
Sbjct: 189 FLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRP--SP 246

Query: 234 VSWNALI-----GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFE 288
           V+   L+      GL K+G    +  L   M   +V   T+++D Y+ +GD  SA  +F+
Sbjct: 247 VTMANLLKACGQSGLKKVGMCAHSYVLALGMGN-DVFVLTSLVDMYSNLGDTGSAALVFD 305

Query: 289 AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348
           +   R +++W+A+ISGY QNG   E+  +F  +       D   LVSL+  CSQ  +L+ 
Sbjct: 306 SMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLEN 365

Query: 349 SNWVDSYLSRSHMDLSRAHVI--AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
              + S + R  ++   +H++   A+VDM +KCG + +A  +F  M  ++V+++ +M+ G
Sbjct: 366 GRILHSCIIRKELE---SHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVG 422

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW----RFFEAMQNVY 462
           LS +G+   A+ LF +M  E +  + V    ++  C+H+G +  G      F        
Sbjct: 423 LSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFD 482

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
           A++ S      ++D+  + G + SA +L N+
Sbjct: 483 AVITSA-----LIDMYAKCGKIHSAEKLFNN 508


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 287/526 (54%), Gaps = 10/526 (1%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H  +I  G E D  +    +++ +S    L Y+  +FN +   +T  WN L+ GY QN
Sbjct: 234 QLHGLVIGSGFEFDPQVANTLVAM-YSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQN 292

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  +I     PD  TF   + +     S+R    +H+ ++R  V  DV++ 
Sbjct: 293 GFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLK 352

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
           ++LID+Y K  ++  ARK+F +    +V   TAMI GY   G  ++A   F  + +   V
Sbjct: 353 SALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV 412

Query: 235 SWNALIGGLV----KIGDLRSARQLFDEMPER---NVVSYTTMI-DGYAKVGDMTSARSL 286
           + +  +  ++     +  L+  ++L   + ++   N+V+  + I D YAK G +  A   
Sbjct: 413 TNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEF 472

Query: 287 FEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346
           F    DRD V W+++IS ++QNG+P+ A+ +F  M     + D   L S +SA + +  L
Sbjct: 473 FRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPAL 532

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
                +  Y+ R+    S   V + L+DM +KCGN+  A  +F  M  ++ VS+ S+I  
Sbjct: 533 YYGKEMHGYVIRNAFS-SDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAA 591

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
              HG  R+ + L+  ML  G+ PD V F ++++AC H GLV++G  +F  M   Y I  
Sbjct: 592 YGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGA 651

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
             EHYACMVDL GR G +  A++ + SMP  P A  WG LLGAC+L+ ++EL +L +  L
Sbjct: 652 RMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHL 711

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            EL+P+N+G YVLLSN++A A  W  V  VRS MKE+G++KIPG S
Sbjct: 712 LELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYS 757



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 220/486 (45%), Gaps = 36/486 (7%)

Query: 33  KPSCLLSALT----LIKKCK---LQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           KP  L S  T    L + C    +     QVH+ +I  G+    +  +  + L + L   
Sbjct: 3   KPETLDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGL-YVLCGR 61

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
              +  +F  +       WN +++G      F      + +++     PDKYTFP VIKA
Sbjct: 62  FRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKA 121

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C  + +V     +H      G   D+F G++LI LY     I  AR+VFDE+P R+ + W
Sbjct: 122 CGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILW 181

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQL------ 255
             M+ GY   GD   A   F  M       ++V++  ++      G+  +  QL      
Sbjct: 182 NVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIG 241

Query: 256 --FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
             F+  P+       T++  Y+K G++  AR LF   P  D V W+ LI+GY QNG  DE
Sbjct: 242 SGFEFDPQVA----NTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDE 297

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A  +F+ M S  V+PD     S + +  + G+L     V SY+ R  +     ++ +AL+
Sbjct: 298 AAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFD-VYLKSALI 356

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           D+  K G+++ A ++F+     DV    +MI G  +HG    A++ F  ++ EG+  + +
Sbjct: 357 DVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSL 416

Query: 434 AFTIVLTACSHVGLVEDGWRFF-----EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488
               VL AC+ V  ++ G         + ++N+  +  +      + D+  + G L  AY
Sbjct: 417 TMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSA------ITDMYAKCGRLDLAY 470

Query: 489 ELLNSM 494
           E    M
Sbjct: 471 EFFRRM 476



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 175/350 (50%), Gaps = 9/350 (2%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +T LWN +L+GY ++  F      F  +    ++ +  T+  ++  C+   +
Sbjct: 169 VFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGN 228

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
              GT +H  VI  G + D  V  +L+ +Y K   +  ARK+F+ MP+ + V+W  +I G
Sbjct: 229 FCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAG 288

Query: 212 YASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----N 263
           Y   G   EA  +F+ M     +  +V++ + +  +++ G LR  +++   +       +
Sbjct: 289 YVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFD 348

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           V   + +ID Y K GD+  AR +F+     DV   +A+ISGY  +G   +A+  F  +  
Sbjct: 349 VYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQ 408

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
           + +  +   + S++ AC+ V  L     +  ++ +  ++ +  +V +A+ DM AKCG +D
Sbjct: 409 EGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLE-NIVNVGSAITDMYAKCGRLD 467

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
            A E F  M +RD V + SMI   S +G    A+ LF +M   G   D V
Sbjct: 468 LAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSV 517



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 21/245 (8%)

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y   G    A +LF     R  + W+ +I G    G  D A+  +  M   NV PD++  
Sbjct: 56  YVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTF 115

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRS---HMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             ++ AC  + N+ L   V    +RS   H+DL      +AL+ + A  G +  A  +F+
Sbjct: 116 PYVIKACGGLNNVPLCMVVHD-TARSLGFHVDLFAG---SALIKLYADNGYIRDARRVFD 171

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            +P RD + +  M++G    G    A+  F  M +     + V +T +L+ C+  G    
Sbjct: 172 ELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRG---- 227

Query: 451 GWRFFEAMQNVYAIVPS------PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
               F A   ++ +V        P+    +V +  + G+L  A +L N+MP +     W 
Sbjct: 228 ---NFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMP-QTDTVTWN 283

Query: 505 ALLGA 509
            L+  
Sbjct: 284 GLIAG 288


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 175/549 (31%), Positives = 291/549 (53%), Gaps = 14/549 (2%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           KP    S L    K     H  Q+H+H+IK GLE D  +    ++L   L T    +  V
Sbjct: 117 KPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKV 176

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+ +   +   W +++ GY +  + +    +F +++     P+ +T   VIKACS +  +
Sbjct: 177 FDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDL 236

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           + G   H  V+  G D +  + ++LID++G+   +  AR++FDE+ E + + WT++I   
Sbjct: 237 KLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISAL 296

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLV-----KIGDLRSARQLFDEMPER----N 263
                  EA   F  M     +  +    G V      +G L+  +++  ++       N
Sbjct: 297 TRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGN 356

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VV  ++++D Y K G +  ++ +F+  P ++ V+WSAL+ GY QNG     ++IF  M  
Sbjct: 357 VVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM-- 414

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              + D +   +++  C+ +  +     V     R         V +ALVD+ AKCG ++
Sbjct: 415 --EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKG-GWRDVIVESALVDLYAKCGCIE 471

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F+ MP R+++++ SMI G + +G G +A+ +F++M+ EG+ PD ++F  +L ACS
Sbjct: 472 YAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 531

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV++G  +F +M   Y I    EHY+CMVDLLGR G L+ A  L+ +      +S W
Sbjct: 532 HRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLW 591

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLGAC   ++ E+ E +A R+ ELEP    SYVLL+N+Y    RW D   +R  MK+R
Sbjct: 592 AALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDR 651

Query: 564 GLRKIPGCS 572
           G+ K+PG S
Sbjct: 652 GVNKMPGKS 660


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 274/470 (58%), Gaps = 31/470 (6%)

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184
           V+L+  E  P K TF L+I +C    S+ +G  +H  ++  G+D+D ++ T LI++Y   
Sbjct: 63  VQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDL 122

Query: 185 KEISCARKVFDEMPERNVVSWTAMI--VGYASVGDLVEAKTVFDLMPERSNVSW------ 236
             +  A KVFDE  E+ +  W A+   +  AS G+        DL+     ++W      
Sbjct: 123 GSVDHACKVFDETREKTIFVWNAIFRALAMASRGE--------DLLVLYGQMNWIGIPSN 174

Query: 237 --------NALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGDMTSAR 284
                    A +   + I  LR  +++   +     E +V   TT++D YA+ G ++ A 
Sbjct: 175 RFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYAS 234

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK--NVQPDEFILVSLMSACSQ 342
           S+F A PD+++V+WSA+I+ YA+N  P +A+++F  M  +  +  P+   +VS++ AC+ 
Sbjct: 235 SVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACAS 294

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
           +  L+    V +Y+ R  +D S   V+  L+ M  +CG +     +F+ M  RDV+S+ S
Sbjct: 295 LAALEHGKLVHAYVLRRGLD-STLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNS 353

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           +I    +HG G++A+ +F+ M++ G++P  + F  VL ACSH GLVE+    FE+M N Y
Sbjct: 354 LISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKY 413

Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
            I P  EHYACMVD+LGR   L  A EL+ +M  +P  + WG+LLG+C+++ ++EL E  
Sbjct: 414 RIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERA 473

Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +  LFELEP+NAG+YVLLS+IYA +  W DV  VR +++ RGL+KIP CS
Sbjct: 474 SAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCS 523



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 183/367 (49%), Gaps = 18/367 (4%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LI  C  Q  L     VH  ++  GL+QD  L    I++   L + + ++  VF+     
Sbjct: 80  LINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGS-VDHACKVFDETREK 138

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS----HVLSVREG 155
             F+WN + +  +  SR  ++  ++ ++       +++T+  V+KAC      +  +R+G
Sbjct: 139 TIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKG 198

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IHA ++R G +  V V T+L+D+Y +   +S A  VF  MP++N+VSW+AMI  YA  
Sbjct: 199 KEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKN 258

Query: 216 GDLVEAKTVFDLMPERS------NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS--- 266
              ++A  +F +M   +       ++  +++     +  L   + +   +  R + S   
Sbjct: 259 EMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLP 318

Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
              T+I  Y + G++++ + +F+    RDV++W++LIS Y  +G   +A++IF +M ++ 
Sbjct: 319 VLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRG 378

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V P     ++++ ACS  G ++ +  +   +   +    R    A +VD+  +   +D A
Sbjct: 379 VSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEA 438

Query: 386 AELFETM 392
            EL + M
Sbjct: 439 IELIQNM 445



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P P  ++S L          H   VH++++++GL+    ++   I++ +     +S    
Sbjct: 280 PNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITM-YGRCGEISTGQR 338

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           VF+ +   +   WN+L+  Y  +    +   IF  +I     P   TF  V+ ACSH   
Sbjct: 339 VFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGL 398

Query: 152 VREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           V E   +  +++ ++ +   +     ++D+ G+   +  A ++   M
Sbjct: 399 VEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNM 445


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/538 (33%), Positives = 289/538 (53%), Gaps = 18/538 (3%)

Query: 42  TLIKKC-KLQT--HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +L+  C KLQ      ++H H+I  G   D  L    + + ++    L  +  VF  +  
Sbjct: 35  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQM-YAKCGSLDDAKRVFEGMEI 93

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            + F W++++  Y++  R      ++ R+I E   P+  TF   +  C+ V  + +G AI
Sbjct: 94  KDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAI 153

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H  ++   V +D  +  SL+++Y K  E+  ARKVF+ M  RNV S+TAMI  Y   G+ 
Sbjct: 154 HQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEH 213

Query: 219 VEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQLFDEMPER----NVVSYTT 269
            EA  +F  M +   +  NA     ++G +  +G+L   R++   +  R    NVV    
Sbjct: 214 AEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNA 273

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  Y K G    AR +F++   R+V++W+++I+ YAQ+G P EA+ +F  M   +V+P 
Sbjct: 274 LVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPS 330

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
                S ++AC+ +G LD    +   +  +  +L+   +  +L+ M A+CG++D A  +F
Sbjct: 331 GVSFSSALNACALLGALDEGREIHHRVVEA--NLASPQMETSLLSMYARCGSLDDARRVF 388

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M  RD  S  +MI   + HG  +QA+ ++ +M  EG+  D + F  VL ACSH  LV 
Sbjct: 389 NRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVA 448

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           D   F +++   + +VP  EHY CMVD+LGR+G L  A EL+ +MP +  A AW  LL  
Sbjct: 449 DCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSG 508

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
           CK + D++ GE  A ++FEL P     YV LSN+YA A R+ D   VR +M+ERG+ +
Sbjct: 509 CKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTR 566



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 199/372 (53%), Gaps = 17/372 (4%)

Query: 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192
           V DK+    ++ AC+ + ++ EG  +H  +I  G   D+ + T+L+ +Y K   +  A++
Sbjct: 27  VADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKR 86

Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGD 248
           VF+ M  +++ +W+++I  YA  G    A  ++  M     E + V++   +GG   +  
Sbjct: 87  VFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAG 146

Query: 249 LRSARQ-----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           L   R      L  ++P+ +V+   ++++ Y K  +M  AR +FE    R+V +++A+IS
Sbjct: 147 LADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMIS 205

Query: 304 GYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            Y Q G+  EA+++FS M   + ++P+ +   +++ A   +GNL+    V  +L+    D
Sbjct: 206 AYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFD 265

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            +   V  ALV M  KCG+   A ++F++M  R+V+S+ SMI   + HG+ ++A++LF R
Sbjct: 266 -TNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKR 324

Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
           M  E   P  V+F+  L AC+ +G +++G      +  V A + SP+    ++ +  R G
Sbjct: 325 MDVE---PSGVSFSSALNACALLGALDEGREIHHRV--VEANLASPQMETSLLSMYARCG 379

Query: 483 HLKSAYELLNSM 494
            L  A  + N M
Sbjct: 380 SLDDARRVFNRM 391



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 53/269 (19%)

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL---- 356
           +I+   + G+P +A++++ +M  + +  D+FI+ SL++AC+++  L+    +  +L    
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
            R+ + L       AL+ M AKCG++D A  +FE M  +D+ ++ S+I   +  G G  A
Sbjct: 61  FRTDIPLE-----TALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMA 115

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG------------------------- 451
           V L+ RM++EG+ P+ V F   L  C+ V  + DG                         
Sbjct: 116 VVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNM 175

Query: 452 ----------WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVE 497
                      + FE M+       +   Y  M+    + G    A EL + M     +E
Sbjct: 176 YLKCDEMVEARKVFEGMK-----ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIE 230

Query: 498 PHASAWGALLGACKLYSDIELGELVANRL 526
           P+A  +  +LGA +   ++E G  V   L
Sbjct: 231 PNAYTFATILGAVEGLGNLEKGRKVHRHL 259


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/542 (33%), Positives = 289/542 (53%), Gaps = 67/542 (12%)

Query: 34  PSCLLSAL---TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
           P+   S+L   +L+  C+   HL+Q+H  ++ + L+QD+  ++ FI  C SL        
Sbjct: 18  PAIFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLG------- 70

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
                            L  Y+        F+IF      +  PD   +   IKA S   
Sbjct: 71  -----------------LSSYA--------FSIF----SNKTHPDLRLYNTAIKALSKTS 101

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           S      ++  +   G+  D +   S++                     + VV  +A+  
Sbjct: 102 SPINAIWLYTRIRIDGLRPDSYSIPSVL---------------------KAVVKLSAV-- 138

Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
               VG  +  +TV   +    NV+  +LI      G +  AR+LFD +  ++V  +  M
Sbjct: 139 ---EVGRQIHTQTVSSALDMDVNVA-TSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAM 194

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
           + GY KVG++ SAR +F   P R+V++W+ LI+GYAQ  +P EA+++F  M  + V+PDE
Sbjct: 195 VAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDE 254

Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
             +++++SAC+ +G L+L  W+ +Y+ + H       +  AL+DM AK GN+ RA E+FE
Sbjct: 255 IAMLAVLSACADLGALELGEWIHNYIEK-HGLCRIVSLYNALIDMYAKSGNIRRALEVFE 313

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
            M  + V+++ ++I  L++HG G +A+ +F RM    + P+EV F  +L+ACSHVG+V+ 
Sbjct: 314 NMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDV 373

Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
           G  +F+ MQ++Y I P  EHY CM+DLL R G+L+ A +LL+ MP E +A  WG+LL A 
Sbjct: 374 GRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAAS 433

Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
             + D EL +L    L +LEP N+G+YVLLSN YA   +W +   VR  M+  G++K PG
Sbjct: 434 NTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPG 493

Query: 571 CS 572
            S
Sbjct: 494 GS 495


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/549 (31%), Positives = 291/549 (53%), Gaps = 14/549 (2%)

Query: 33  KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAV 92
           KP    S L    K     H  Q+H+H+IK GLE D  +    ++L   L T    +  V
Sbjct: 58  KPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKV 117

Query: 93  FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV 152
           F+ +   +   W +++ GY +  + +    +F +++     P+ +T   VIKACS +  +
Sbjct: 118 FDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDL 177

Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
           + G   H  V+  G D +  + ++LID++G+   +  AR++FDE+ E + + WT++I   
Sbjct: 178 KLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISAL 237

Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLV-----KIGDLRSARQLFDEMPER----N 263
                  EA   F  M     +  +    G V      +G L+  +++  ++       N
Sbjct: 238 TRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGN 297

Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
           VV  ++++D Y K G +  ++ +F+  P ++ V+WSAL+ GY QNG     ++IF  M  
Sbjct: 298 VVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM-- 355

Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
              + D +   +++  C+ +  +     V     R         V +ALVD+ AKCG ++
Sbjct: 356 --EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKG-GWRDVIVESALVDLYAKCGCIE 412

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F+ MP R+++++ SMI G + +G G +A+ +F++M+ EG+ PD ++F  +L ACS
Sbjct: 413 YAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACS 472

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLV++G  +F +M   Y I    EHY+CMVDLLGR G L+ A  L+ +      +S W
Sbjct: 473 HRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLW 532

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
            ALLGAC   ++ E+ E +A R+ ELEP    SYVLL+N+Y    RW D   +R  MK+R
Sbjct: 533 AALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDR 592

Query: 564 GLRKIPGCS 572
           G+ K+PG S
Sbjct: 593 GVNKMPGKS 601


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 301/545 (55%), Gaps = 11/545 (2%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S  ++++K K    L Q+H+ II  GL  + + +++ +   +     L+ +  +F+    
Sbjct: 26  SHASILRKLKDLKPLQQIHAQIITSGLTHN-TFLSNSLMNAYVYCGLLADAKQIFHHTPC 84

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   W  L+ G ++N  F+E   +F  +      P+  T   V+ A +++  +R   ++
Sbjct: 85  KNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSV 144

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H   +R G + +VFV T+L+D+Y K   +  AR++F+ M ERNVVSW A++ GY+  G  
Sbjct: 145 HCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFS 204

Query: 219 VEAKTVFDLMPERSNV----SWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTM 270
            EA  +F+LM  +  +    +  +LI   + +G L+    +   +     E +    T +
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL 264

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPD 329
           +D Y     +  A  +F     +DV AW+ +++G++     D A+K F+ M   +N++ D
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLD 324

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
             +L+ ++S+CS  G L     V +   ++    +   V +A++DM A CGN++ A   F
Sbjct: 325 SIVLMGILSSCSHSGALQQGRRVHALAIKTCF-ANNIFVGSAVIDMYANCGNLEDAKRFF 383

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
             M  +DVV + +MI G  ++G+G  A+ LF +M   GL PDE  F  VL ACSH G+V 
Sbjct: 384 YGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVY 443

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G + F  M      +P+ +HYAC++D+LGR G L +AY  +N+MP +P    +  LLGA
Sbjct: 444 EGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGA 503

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+++ +I+LG  ++ ++FE+EP +AG YVLLSN+YA A  W  V + R+ ++ + L+K P
Sbjct: 504 CRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDP 563

Query: 570 GCSSL 574
           G SS+
Sbjct: 564 GFSSI 568


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/547 (32%), Positives = 302/547 (55%), Gaps = 16/547 (2%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           SCLL  +T +  C     +   H +I+K G     ++    IS  ++ +  +  +  VFN
Sbjct: 421 SCLLKCITCLS-CARDGLV--AHGYIVKLGFGAQCAVCNALISF-YAKSNMIGDAVLVFN 476

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
           R+   +T  WN+++ G S N    E   +F+R+  +    D  T   V+ AC+       
Sbjct: 477 RMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFA 536

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
           G  +H   ++ G+  +  +  +L+D+Y    +     ++F  M ++NVVSWTAMI  Y  
Sbjct: 537 GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMR 596

Query: 215 VG------DLVEAKTVFDLMPERSNVS--WNALIGG-LVKIGDLRSARQLFDEMPERNVV 265
            G       L++   +  + P+   V+   +A  G   +K G       + + M E+ + 
Sbjct: 597 AGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGM-EKLLP 655

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
               +++ Y K  ++  AR +F+   ++DV++W+ LI GY++N  P+E+  +FSDM  + 
Sbjct: 656 VANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ- 714

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
            +P+   +  ++ A + + +L+    + +Y  R    L  ++   ALVDM  KCG +  A
Sbjct: 715 FRPNAVTMTCILPAAASISSLERGREIHAYALRRGF-LEDSYASNALVDMYVKCGALLVA 773

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             LF+ +  ++++S+  MI G  +HG G+ A++LF++M   G+ PD  +F+ +L AC H 
Sbjct: 774 RVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHS 833

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GL  +G RFF+AMQ  Y I P  +HY C+VDLL RTG LK A E + SMP+EP +S W +
Sbjct: 834 GLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVS 893

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LL  C+++ +++L E VA+++F+LEP+N G YVLL+NIYA A+RW  V  +++K+  RGL
Sbjct: 894 LLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGL 953

Query: 566 RKIPGCS 572
           R+  G S
Sbjct: 954 RENTGYS 960



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 177/360 (49%), Gaps = 10/360 (2%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N  +WN ++ GY++   F E  ++FV++      PD++    ++K  + +   R+G   H
Sbjct: 381 NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAH 440

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
             +++ G      V  +LI  Y K   I  A  VF+ MP ++ +SW ++I G +S G   
Sbjct: 441 GYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNS 500

Query: 220 EAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT----MI 271
           EA  +F  M     E  +V+  +++    +     + R +     +  ++  T+    ++
Sbjct: 501 EAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALL 560

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D Y+   D  S   +F +   ++VV+W+A+I+ Y + G  D+   +  +M    ++PD F
Sbjct: 561 DMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVF 620

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
            + S + A +   +L     V  Y  R+ M+     V  AL++M  KC N++ A  +F+ 
Sbjct: 621 AVTSALHAFAGDESLKQGKSVHGYTIRNGME-KLLPVANALMEMYVKCRNVEEARLIFDR 679

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
           + N+DV+S+ ++I G S +    ++ SLF  ML +   P+ V  T +L A + +  +E G
Sbjct: 680 VTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERG 738



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 34/368 (9%)

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           +W +L+  Y++   F E  ++F ++      PD +    V+K  S + S+ EG  IH  +
Sbjct: 171 VWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLL 230

Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------ 216
            + G+ +   V  +LI +Y +   +  A +VFD M  R+ +SW +MI G  S G      
Sbjct: 231 EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAV 290

Query: 217 DL----------VEAKTVFDLMPERSNVSWN----ALIGGLVKIGDLRSARQLFDEMPER 262
           DL          + + TV  ++P  + + +     A+ G  VK G L     +   + + 
Sbjct: 291 DLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDA 350

Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKIFSDM 321
            + S    +  Y K GDM SAR +F+A   + +V  W+ ++ GYA+ G+ +E++ +F  M
Sbjct: 351 ALGSKLVFM--YVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM 408

Query: 322 CSKNVQPDEFILVSLMS-----ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
               + PDE  +  L+      +C++ G +        Y+ +     ++  V  AL+   
Sbjct: 409 HELGIAPDEHAISCLLKCITCLSCARDGLV-----AHGYIVKLGFG-AQCAVCNALISFY 462

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AK   +  A  +F  MP +D +S+ S+I G S +G   +A+ LF RM ++G   D V   
Sbjct: 463 AKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLL 522

Query: 437 IVLTACSH 444
            VL AC+ 
Sbjct: 523 SVLPACAQ 530



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 187/408 (45%), Gaps = 27/408 (6%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           +H  + K GL Q  ++    I++ +S    +  +  VF+ +   +   WN+++ G   N 
Sbjct: 226 IHGLLEKLGLGQACAVANALIAV-YSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNG 284

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR----WGVD--- 168
                  +F ++  +       T   V+ AC+ +     G A+H   ++    WG+D   
Sbjct: 285 WHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQ 344

Query: 169 ---EDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDLVEAKTV 224
              +D  +G+ L+ +Y K  +++ AR+VFD M  + NV  W  ++ GYA VG+  E+ ++
Sbjct: 345 SGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSL 404

Query: 225 FDLMPERSNVSWNALIGGLVK-IGDLRSARQLFDEMPERNVVSY----------TTMIDG 273
           F  M E         I  L+K I  L  AR   D +     +              +I  
Sbjct: 405 FVQMHELGIAPDEHAISCLLKCITCLSCAR---DGLVAHGYIVKLGFGAQCAVCNALISF 461

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK   +  A  +F   P +D ++W+++ISG + NG   EA+++F  M ++  + D   L
Sbjct: 462 YAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTL 521

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +S++ AC+Q         V  Y  ++ + +    +  AL+DM + C +     ++F +M 
Sbjct: 522 LSVLPACAQSRYWFAGRVVHGYSVKTGL-IGETSLANALLDMYSNCSDWQSTNQIFRSMG 580

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441
            ++VVS+ +MI      G   +   L   M+ +G+ PD  A T  L A
Sbjct: 581 QKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHA 628



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 188/418 (44%), Gaps = 42/418 (10%)

Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV-----DEDVFVGTSLID 179
           +RL+  +   D  ++ +V++ C    S+      HA +IR         +   +G  L+ 
Sbjct: 86  LRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHA-LIRASSAAATGGKGSVLGKRLVL 144

Query: 180 LYGKRKEISCARKVFDEMPER--NVVSWTAMIVGYASVGDLVEAKTVFDLM------PER 231
            Y K  ++  AR VFD MP +  +V  WT+++  YA  GD  EA ++F  M      P+ 
Sbjct: 145 AYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDA 204

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLF 287
             VS   ++  +  +G L     +   + +    +       +I  Y++ G M  A  +F
Sbjct: 205 HAVS--CVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVF 262

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           ++   RD ++W+++I G   NG    AV +FS M S+  +     ++S++ AC+ +G   
Sbjct: 263 DSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGL 322

Query: 348 LSNWVDSYLSRSHM---------DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           +   V  Y  +S +          +  A + + LV M  KCG+M  A  +F+ M ++  V
Sbjct: 323 IGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNV 382

Query: 399 SYCSMI-KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT-----ACSHVGLVEDGW 452
              ++I  G +  G   +++SLF +M   G+ PDE A + +L      +C+  GLV  G+
Sbjct: 383 HVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY 442

Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
                     A+  +      ++    ++  +  A  + N MP +   S W +++  C
Sbjct: 443 IVKLGFGAQCAVCNA------LISFYAKSNMIGDAVLVFNRMPRQDTIS-WNSVISGC 493



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 127/262 (48%), Gaps = 18/262 (6%)

Query: 270 MIDGYAKVGDMTSARSLFEAAPDR--DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           ++  Y K GD+  AR++F+  P +  DV  W++L+S YA+ G   EAV +F  M    V 
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAA 386
           PD   +  ++   S +G+L     +   L +  + L +A  +A AL+ + ++CG M+ AA
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEK--LGLGQACAVANALIAVYSRCGRMEDAA 259

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            +F++M  RD +S+ SMI G   +G    AV LF +M S+G     V    VL AC+ +G
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLG 319

Query: 447 L-----------VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495
                       V+ G      + +V + +      + +V +  + G + SA  + ++M 
Sbjct: 320 YGLIGKAVHGYSVKSG--LLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMS 377

Query: 496 VEPHASAWGALLGACKLYSDIE 517
            + +   W  ++G      + E
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFE 399


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 302/553 (54%), Gaps = 18/553 (3%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
           P    L SA++            Q H +  +  +E D S++   I L +   + LS +  
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDL-YCKCSRLSLARK 271

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ + N N   W T++ GY QNS   E   +F +L +E   PD +    ++ +C  + +
Sbjct: 272 LFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAA 331

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           + +G  +HA  I+  ++ D +V  SLID+Y K + ++ AR VF+ + E + +S+ AMI G
Sbjct: 332 IWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEG 391

Query: 212 YASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
           Y+ +GDL  A  VF  M     + S +++ +L+G    +   +SA +L  ++    V S 
Sbjct: 392 YSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLG----VSSSQSAIELSKQIHGLIVKSG 447

Query: 268 TTM--------IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           T++        ID Y+K   +  A+++F    +RD+V W+A+I G AQN Q +EAVK+F+
Sbjct: 448 TSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFN 507

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            +    + P+EF  V+L++  S + ++       + + ++  D S  HV  AL+DM AKC
Sbjct: 508 QLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGAD-SDHHVSNALIDMYAKC 566

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +     LFE+   +DV+ + SMI   + HG   +A+ +F  M   G+ P+ V F  VL
Sbjct: 567 GFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVL 626

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +AC+H GLV++G R F+ M+  YAI P  EHYA +V+L GR+G L +A E +  MP+EP 
Sbjct: 627 SACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPA 686

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           A+ W +LL AC L+ ++E+G          +P ++G  VL+SNIYA+   W D   +R  
Sbjct: 687 AAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQG 746

Query: 560 MKERGLRKIPGCS 572
           M   G+ K PG S
Sbjct: 747 MDCAGVVKEPGYS 759



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 231/481 (48%), Gaps = 19/481 (3%)

Query: 25  RSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLAT 84
           R++    P    L SAL    + +  +   QVH   ++ GL+ +  +    I+L ++   
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINL-YAKVG 163

Query: 85  PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIK 144
            +  +  VF+ +   N   W  ++ GYSQ  +      +F ++  +   PD++     + 
Sbjct: 164 CIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVS 223

Query: 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
           ACS +  +  G   H    R  V+ D  V  +LIDLY K   +S ARK+FD M  RN+VS
Sbjct: 224 ACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVS 283

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-------ALIGGLVKIGDLRSARQLFD 257
           WT MI GY       EA  +F    + S   W        +++     +  +   RQ+  
Sbjct: 284 WTTMIAGYMQNSCDAEAMAMF---WQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHA 340

Query: 258 EMPERNVVS----YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
              + N+ S      ++ID YAK   +T AR++FEA  + D ++++A+I GY++ G    
Sbjct: 341 HAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAG 400

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           A+ +FS M   +++P     VSL+   S    ++LS  +   + +S   L   +  ++L+
Sbjct: 401 AIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLD-LYAGSSLI 459

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           D+ +K   ++ A  +F  M NRD+V + +MI GL+ +  G +AV LF+++   GL P+E 
Sbjct: 460 DVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEF 519

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLN 492
            F  ++T  S +  +  G +F    Q + A   S  H +  ++D+  + G +K    L  
Sbjct: 520 TFVALVTVASTLVSMFHGQQFHA--QIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFE 577

Query: 493 S 493
           S
Sbjct: 578 S 578



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 184/372 (49%), Gaps = 39/372 (10%)

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           HA  +  G   D+F+   L+  Y K   +  AR++FD MP +N+VSW + I  +A  G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 219 VEAKTVFDLMPERSN---------------------VSWNALIGGL-VKIGDLRSARQLF 256
            +A  +F      S                      VS+   + G+ V+IG         
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIG--------- 144

Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
               + NV   T +I+ YAKVG + +A  +F+A P ++ V W+A+I+GY+Q GQ   A++
Sbjct: 145 ---LDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALE 201

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F  M    V+PD F+L S +SACS +G L+       Y  R  ++ + A VI AL+D+ 
Sbjct: 202 LFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVE-TDASVINALIDLY 260

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
            KC  +  A +LF+ M NR++VS+ +MI G   +    +A+++F ++  EG  PD  A  
Sbjct: 261 CKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACA 320

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMP 495
            +L +C  +  +  G +       + A + S E+    ++D+  +  HL  A  +  ++ 
Sbjct: 321 SILNSCGSLAAIWQGRQVHA--HAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALA 378

Query: 496 VEPHASAWGALL 507
            E  A ++ A++
Sbjct: 379 -EDDAISYNAMI 389


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 283/501 (56%), Gaps = 23/501 (4%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ S  + N I   N  L  +L KG +            + L+  E  P + TF  +I +
Sbjct: 36  LNPSANLMNDIKGNNNQLIQSLCKGGNLKQA--------IHLLCCEPNPTQRTFEHLICS 87

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           C+   S+ +G  +H  ++  G D+D F+ T LI++Y +   I  ARKVFDE  ER +  W
Sbjct: 88  CAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVW 147

Query: 206 TAMIVGYASVG------DLVEAKTVFDLMPERSNVSW--NALIGGLVKIGDLRSARQLFD 257
            A+    A VG      DL        +  +R   ++   A +   + +  L+  +++  
Sbjct: 148 NALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHA 207

Query: 258 EM----PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            +     E N+   TT++D YAK G ++ A S+F A P ++ V+WSA+I+ +A+N  P +
Sbjct: 208 HILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMK 267

Query: 314 AVKIFSDMC--SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
           A+++F  M   + +  P+   +V+++ AC+ +  L+    +  Y+ R  +D S   V+ A
Sbjct: 268 ALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLD-SILPVLNA 326

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+ M  +CG +     +F+ M NRDVVS+ S+I    +HG G++A+ +F+ M+ +G +P 
Sbjct: 327 LITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPS 386

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
            ++F  VL ACSH GLVE+G   FE+M + Y I P  EHYACMVDLLGR   L  A +L+
Sbjct: 387 YISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLI 446

Query: 492 NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551
             M  EP  + WG+LLG+C+++ ++EL E  +  LFELEP+NAG+YVLL++IYA A  W 
Sbjct: 447 EDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWS 506

Query: 552 DVCLVRSKMKERGLRKIPGCS 572
           +   V   ++ RGL+K+PGCS
Sbjct: 507 EAKSVMKLLEARGLQKLPGCS 527



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 179/368 (48%), Gaps = 20/368 (5%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           LI  C  Q  L     VH  ++  G +QD  L    I++ + L + +  +  VF+     
Sbjct: 84  LICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGS-IDRARKVFDETRER 142

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS----HVLSVREG 155
             ++WN L +  +      E+  ++V++       D++T+  V+KAC      V  +++G
Sbjct: 143 TIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKG 202

Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
             IHA ++R G + ++ V T+L+D+Y K   +S A  VF  MP +N VSW+AMI  +A  
Sbjct: 203 KEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKN 262

Query: 216 GDLVEAKTVFDLMPERSN------VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS--- 266
              ++A  +F LM   ++      V+   ++     +  L   + +   +  R + S   
Sbjct: 263 EMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILP 322

Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
               +I  Y + G++   + +F+   +RDVV+W++LIS Y  +G   +A++IF +M  + 
Sbjct: 323 VLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQG 382

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
             P     ++++ ACS  G ++    + +S LS+  +     H  A +VD+  +   +D 
Sbjct: 383 SSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHY-ACMVDLLGRANRLDE 441

Query: 385 AAELFETM 392
           A +L E M
Sbjct: 442 AIKLIEDM 449


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 305/575 (53%), Gaps = 83/575 (14%)

Query: 80  HSLATPLSYSTAVFNRI--VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDK 136
           H+ A  L  + A F+ +     +T L N ++  +++ S      ++F  L+   ++ PD 
Sbjct: 104 HAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDD 163

Query: 137 YTFPLVIKACS--HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--RKEISC-AR 191
           Y+F  +I A    H L+    T +H +V++ G    + V  +LI LY K    E S  AR
Sbjct: 164 YSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDAR 223

Query: 192 KVFDEMPERNVVSWT-------------------------------AMIVGY-------- 212
           KV DEMP+++ ++WT                               AMI GY        
Sbjct: 224 KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCAD 283

Query: 213 ---------------------------ASVGDLVEAKTVF--------DLMPERSNVSWN 237
                                      A+ G  V  K+V         + +PE +    N
Sbjct: 284 AFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNN 343

Query: 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297
           AL+    K G +  A+++FD M  ++VVS+ T++ GY   G +  A  +F+  P ++ ++
Sbjct: 344 ALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLS 403

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W  ++SGY   G  ++A+K+F+ M +++V+P ++     ++AC ++G L     + ++L 
Sbjct: 404 WMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLV 463

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
           +   + S +    AL+ M AKCG ++ A  +F  MPN D VS+ +MI  L  HGHGR+A+
Sbjct: 464 QCGFEASNS-AGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 522

Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477
            LFD+M++EG+ PD ++F  +LTAC+H GLV++G+ +FE+M+  + I P  +HYA ++DL
Sbjct: 523 ELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDL 582

Query: 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537
           LGR+G +  A +L+ +MP EP  S W A+L  C+   D+E G   A++LF + PQ+ G+Y
Sbjct: 583 LGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTY 642

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +LLSN Y+ A RW+D   VR  M++RG++K PGCS
Sbjct: 643 ILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCS 677


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/571 (31%), Positives = 298/571 (52%), Gaps = 17/571 (2%)

Query: 14  KSCSSMLPNCSRSAPINFPKPSCLLSALTLI-KKCKLQTHLHQVHSHIIKKGLEQDHSLV 72
           K C  ML           P  + L++ L +  ++  +Q  + ++H   +K GL +D  + 
Sbjct: 114 KDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGI-RIHGLAVKLGLSEDVRVN 172

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132
              + + +S    L+ +  +F++    N   WNT++ G        E F +F  +  +E 
Sbjct: 173 NSLVDM-YSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQED 231

Query: 133 VP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
           +  ++ T   ++ AC  +  +R    +H   IR G   D  V    +  Y K   + CA 
Sbjct: 232 IEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAE 291

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV-SWNALIGGLVKIGDLR 250
           +VF  M  + V SW A+I G A  GD  +A  ++  M     V  W  +   L+    L+
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351

Query: 251 SARQLFDEMPERNVVSYTTMIDG---------YAKVGDMTSARSLFEAAPDRDVVAWSAL 301
           S R  + +     V+ +   ID          Y   G+ +SAR LF+   ++  V+W+A+
Sbjct: 352 SLR--YGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAM 409

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
           ISGY+QNG P++A+ +F  + S   QP +  +VS++ ACSQ   L L      Y  ++ +
Sbjct: 410 ISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALL 469

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
            +    V  + +DM AK G +  +  +F+ + N+D+ S+ ++I    +HG G +++ LF+
Sbjct: 470 -MEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFE 528

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481
           RM   G  PD   F  +LT CSH GLVE+G ++F  MQN + I P  EHYAC++D+LGR 
Sbjct: 529 RMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRA 588

Query: 482 GHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541
           G L  A  L++ MP +P +  W +LL  C+ + ++E+G++VA +L ELEP+N  +YV LS
Sbjct: 589 GRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLS 648

Query: 542 NIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           N+YA + RW DV  VR  +K+ GL+K  GCS
Sbjct: 649 NLYAGSGRWDDVRRVRQMIKDIGLQKDAGCS 679



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 245/507 (48%), Gaps = 35/507 (6%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHLHQV-HSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           NF  P C++ A T      L   L +V H  +IK GL  D  +    I++       +  
Sbjct: 31  NFTFP-CVIKACT----GSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGF-VDA 84

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLI--REEAVPDKYTFPLVIKAC 146
           +  VF+ +   N   WN+++ G+S+N    + F + V ++   E  +PD  T   V+  C
Sbjct: 85  AVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVC 144

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           +  + V+ G  IH   ++ G+ EDV V  SL+D+Y K   ++ A+ +FD+   +N VSW 
Sbjct: 145 AREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWN 204

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQL------ 255
            MI G  + G + EA  +F  M  + ++  N      ++   ++I  LRS ++L      
Sbjct: 205 TMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIR 264

Query: 256 ----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
               +DE+     V+       YAK G +  A  +F +   + V +W+ALI G AQNG P
Sbjct: 265 HGFQYDELVANGFVA------AYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDP 318

Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
            +A+ ++  M    + PD F + SL+ A + + +L     V  ++ R  +++  + +  +
Sbjct: 319 RKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEID-SFIGIS 377

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431
           L+ +   CG    A  LF+ M  +  VS+ +MI G S +G    A+ LF +++S+G  P 
Sbjct: 378 LLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPS 437

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTGHLKSAYEL 490
           ++A   VL ACS    +  G         + A++      AC  +D+  ++G +K +  +
Sbjct: 438 DIAVVSVLGACSQQSALRLGKE--THCYALKALLMEDVFVACSTIDMYAKSGCIKESRSV 495

Query: 491 LNSMPVEPHASAWGALLGACKLYSDIE 517
            + +  +  AS W A++ A  ++ D E
Sbjct: 496 FDGLKNKDLAS-WNAIIAAYGVHGDGE 521



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 178/349 (51%), Gaps = 21/349 (6%)

Query: 113 QNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
           +N  + +   +FV+LI + E   D +TFP VIKAC+  L    G  IH  VI+ G+  DV
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
           FVG +LI +YGK   +  A KVF  MP RN+VSW ++I G++  G    +K  FD++ E 
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENG---FSKDCFDMLVEM 123

Query: 232 SNVSWNAL--IGGLVKIGDLRSARQLFDEMPER------------NVVSYTTMIDGYAKV 277
                  L  I  LV +  +  AR++  +M  R            +V    +++D Y+K 
Sbjct: 124 MAGEEGLLPDIATLVTVLPV-CAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKC 182

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSL 336
           G +T A+ LF+    ++ V+W+ +I G    G   EA  +F +M   ++++ +E  ++++
Sbjct: 183 GYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNI 242

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC ++  L     +  Y  R         V    V   AKCG +  A  +F +M  + 
Sbjct: 243 LPACLEISQLRSLKELHGYSIRHGFQYDEL-VANGFVAAYAKCGMLICAERVFYSMETKT 301

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
           V S+ ++I G + +G  R+A++L+ +M   GL PD      +L A +H+
Sbjct: 302 VNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL 350


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/443 (38%), Positives = 266/443 (60%), Gaps = 15/443 (3%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V+  C    ++REG  +HA +I+   +  V++ T LI LY K + +  AR+V DEMPERN
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFD 257
           VVSWTAMI GY+  G   EA  +F  M       +  ++  ++         +  RQ+  
Sbjct: 76  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 135

Query: 258 EMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            + + +  S+    ++++D YAK G +  AR +F+  P+RDVV+ +A+ISGYAQ G  +E
Sbjct: 136 LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE 195

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AA 371
           A+ +F  +  + ++ +     S+++A S +  LD    V S++ R+ +     +V+   +
Sbjct: 196 ALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF---YVVLQNS 252

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTP 430
           L+DM +KCG++  +  +F++MP R V+S+ +M+ G S HG GR+AV LF  M  E  + P
Sbjct: 253 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 312

Query: 431 DEVAFTIVLTACSHVGLVEDGWR-FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           D V F  VL+ CSH G+ + G   F+E +       P  EHY C+VDL GR G ++ A+E
Sbjct: 313 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 372

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MP EP A+ WG+LLGAC+++ ++ +GE VA RL E+E +NAG+YV+LSN+YA+A R
Sbjct: 373 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 432

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W DV  VR  MKE+ + K PG S
Sbjct: 433 WDDVRTVRELMKEKAVIKEPGRS 455



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +++ +C  QT + +   VH+H+IK   E    L    I L ++    L  +  V + +  
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVL-YNKCRCLGDARRVLDEMPE 73

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   W  ++ GYSQ     E   +FV ++     P+++TF  V+ +C+     + G  I
Sbjct: 74  RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H+ VI+   +  +FVG+SL+D+Y K  +I  AR+VFD +PER+VVS TA+I GYA +G  
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 193

Query: 219 VEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERN----VVSYTTM 270
            EA  +F  +     RSN V++ +++  L  +  L   RQ+   +        VV   ++
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 253

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPD 329
           ID Y+K G +T +R +F++ P+R V++W+A++ GY+++G   EAV++F  M  +N V+PD
Sbjct: 254 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 313

Query: 330 EFILVSLMSACSQVGNLD--LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
               ++++S CS  G  D  L  + +    +   +    H    +VD+  + G ++ A E
Sbjct: 314 SVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY-GCVVDLFGRAGRVEEAFE 372

Query: 388 LFETMP 393
             + MP
Sbjct: 373 FIKKMP 378



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 35/263 (13%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S LT +       H  QVHSH+++  L     L    I + +S    L+YS  +F+ +  
Sbjct: 217 SVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM-YSKCGSLTYSRRIFDSMPE 275

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKACSHVLSVREGT 156
                WN +L GYS++    E   +F +L++EE    PD  TF  V+  CSH      G 
Sbjct: 276 RTVISWNAMLVGYSKHGLGREAVELF-KLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGL 334

Query: 157 AIHAAVI--RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYA 213
            I   ++  + G + ++     ++DL+G+   +  A +   +MP E     W        
Sbjct: 335 EIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW-------- 386

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
             G L+ A            V  N  IG  V       AR+L  E+   N  +Y  + + 
Sbjct: 387 --GSLLGA----------CRVHQNVHIGEFV-------ARRLL-EIESENAGNYVILSNL 426

Query: 274 YAKVGDMTSARSLFEAAPDRDVV 296
           YA  G     R++ E   ++ V+
Sbjct: 427 YASAGRWDDVRTVRELMKEKAVI 449


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 266/477 (55%), Gaps = 51/477 (10%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           ++AC   ++ R+   +H  V+R  + +  ++ T ++ L    + ++ A +VF ++ + N+
Sbjct: 21  LRAC---VTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNL 77

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMP--------------------------------- 229
               AMI  YA      +A  V+  M                                  
Sbjct: 78  HLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALEL 137

Query: 230 -------------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                        + S +  N+LI    + GDL  A ++FDEM ER+VVS+  +I  +A+
Sbjct: 138 GKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHAR 197

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           +G M  A +LF + PD+ +V W+A++SGY   G    AV  F  M ++  +PD+  +V++
Sbjct: 198 LGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAV 257

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC+Q+G L+L  W+ +Y  R  M L+  H+  AL++M AKCG +D+A +LF+ M ++D
Sbjct: 258 LPACAQLGTLELGRWIYAYCKRHGM-LTSTHICNALMEMYAKCGCIDQALQLFDGMADKD 316

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           V+S+ ++I GL+ HG   +AV LF  M  EG + P+ + F  +L+ACS+ GLV++G   F
Sbjct: 317 VISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHF 376

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           + M +VY + P  EHY C+VDLLGR+G ++ A +L+  MPV   A  WG+LL AC+ + D
Sbjct: 377 DRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGD 436

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++   L A RL ELEP + G+ V+L+N+YA A RW DV   R  ++ R +RK PGCS
Sbjct: 437 VDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCS 493



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 225/451 (49%), Gaps = 55/451 (12%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           + +  ++ C     L +VH H+++  + Q   L    + LC++    ++++  VF ++ +
Sbjct: 16  AVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNA-HRRVTHAARVFAQVRD 74

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-------DKYTFPLVIKACSHVLS 151
           PN  L N ++K Y+QN +  +   +++R++R    P       D++T+P ++KAC    +
Sbjct: 75  PNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAA 134

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  V+R G D    V  SLI++Y +  +++ A KVFDEM ER+VVSW  +I  
Sbjct: 135 LELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISA 194

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE---- 261
           +A +G + +A  +F+ MP+++ V+W A++ G   +GD   A   F  M      P+    
Sbjct: 195 HARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSI 254

Query: 262 ----------------RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPD 292
                           R + +Y               +++ YAK G +  A  LF+   D
Sbjct: 255 VAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMAD 314

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLD--LS 349
           +DV++WS +I G A +G+  EAV +F++M  +  V+P+    V L+SACS  G +D  LS
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLS 374

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLS 408
           ++ D       ++    H    +VD+  + G + RA +L   MP   D   + S++    
Sbjct: 375 HF-DRMNDVYGVEPGVEH-YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACR 432

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
            HG    AV   +R++   L PD+V   ++L
Sbjct: 433 SHGDVDTAVLAAERLVE--LEPDDVGNLVML 461


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 283/488 (57%), Gaps = 10/488 (2%)

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
           S A  +  +  +F+ +   +   WN++L  Y QN        +F  +     V    ++ 
Sbjct: 40  SRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVV----SWN 95

Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
            +I AC    ++++     AA      +++     ++I    +   +  A+++F+ MP  
Sbjct: 96  SIIAACVQNDNLQDAFRYLAA----APEKNAASYNAIISGLARCGRMKDAQRLFEAMPCP 151

Query: 201 NVVSWTAMIVGYASV-GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           NVVS+TAM+ GYA V G +  A+ +F+ MP R++VSW  +I GLV+ G    A ++F  M
Sbjct: 152 NVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRM 211

Query: 260 PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS 319
           P++N V+ T MI G+ K G M  AR LF+    RD+V+W+ +++GYAQNG+ +EA+ +FS
Sbjct: 212 PQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFS 271

Query: 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379
            M    +QPD+   VS+  AC+ + +L+  +   + L +   D S   V  AL+ +++KC
Sbjct: 272 QMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFD-SDLSVCNALITVHSKC 330

Query: 380 GNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
           G +  +  +F  + + D+VS+ ++I   + HG   +A S FD+M++  + PD + F  +L
Sbjct: 331 GGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLL 390

Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499
           +AC   G V +    F  M + Y I P  EHYAC+VD++ R G L+ A +++N MP +  
Sbjct: 391 SACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKAD 450

Query: 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559
           +S WGA+L AC ++ ++ELGEL A R+  L+P N+G+YV+LSNIYA A +W DV  +R  
Sbjct: 451 SSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVL 510

Query: 560 MKERGLRK 567
           MKE+G++K
Sbjct: 511 MKEQGVKK 518



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 155/315 (49%), Gaps = 72/315 (22%)

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            DV+     I    +  ++  ARK+FDEM  ++VV+W +M+  Y   G L  +K +F  M
Sbjct: 27  RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSM 86

Query: 229 PERSNVSW-------------------------------NALIGGLVKIGDLRSARQLFD 257
           P R+ VSW                               NA+I GL + G ++ A++LF+
Sbjct: 87  PLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFE 146

Query: 258 EMPERNVVSYTTMIDGYAKV-GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
            MP  NVVSYT M+DGYA+V G +  AR+LFEA P R+ V+W  +I+G  +NG  +EA +
Sbjct: 147 AMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWE 206

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           +F  M  KN                                    D++R  +I       
Sbjct: 207 VFVRMPQKN------------------------------------DVARTAMITGF---- 226

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
            K G M+ A +LF+ +  RD+VS+  ++ G + +G G +A++LF +M+  G+ PD++ F 
Sbjct: 227 CKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFV 286

Query: 437 IVLTACSHVGLVEDG 451
            V  AC+ +  +E+G
Sbjct: 287 SVFIACASLASLEEG 301



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 106/235 (45%), Gaps = 14/235 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           + H+ +IK G + D S+    I++ HS    +  S  VF +I +P+   WNT++  ++Q+
Sbjct: 303 KAHALLIKHGFDSDLSVCNALITV-HSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQH 361

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI-RWGVDEDVFV 173
             + +  + F +++     PD  TF  ++ AC     V E   + + ++  +G+      
Sbjct: 362 GLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEH 421

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE-----AKTVFDLM 228
              L+D+  +  ++  A K+ +EMP +   S    ++   SV   VE     A+ + +L 
Sbjct: 422 YACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLD 481

Query: 229 PERSN--VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
           P  S   V  + +     K  D+   R L  E   +   +Y+     + ++G+ T
Sbjct: 482 PFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYS-----WLQIGNKT 531


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 263/471 (55%), Gaps = 53/471 (11%)

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           S++    +HAA++R G+DED ++   ++         + + ++F +  E N+  +  MI 
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 211 GYASVGDLVEAKTVFDLMPERS-------------------------------------- 232
           G        E+  ++  M +                                        
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141

Query: 233 ----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG------DM-T 281
               N S  +L G   K G + +A ++FD++PE+NV ++T +I GY  VG      DM  
Sbjct: 142 DAFVNTSLVSLYG---KCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFR 198

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
            A S+F+   ++D+V+WS++I GYA NG P EA+ +F  M ++  +PD + +V ++ AC+
Sbjct: 199 RACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACA 258

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           ++G L+L NW  + + R+   L    +  AL+DM AKCG MD A E+F  M  +D+V + 
Sbjct: 259 RLGALELGNWASNLMDRNEF-LGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWN 317

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           + I GL++ GH + A  LF +M   G+ PD   F  +L AC+H GLV++G ++F +M+ V
Sbjct: 318 AAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV 377

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
           + + P  EHY CMVDLLGR G L  A++L+ SMP+E +A  WGALLG C+L+ D +L E 
Sbjct: 378 FTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEG 437

Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           V  +L  LEP N+G+YVLLSNIY+ + +W D   +RS M ERG++K+PG S
Sbjct: 438 VLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYS 488



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/406 (30%), Positives = 195/406 (48%), Gaps = 48/406 (11%)

Query: 52  HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
           HL  VH+ +++ GL++D  L+   +    +     +YS  +F++   PN FL+NT++ G 
Sbjct: 25  HLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNT-NYSHRIFHQTKEPNIFLFNTMIHGL 83

Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
             N  F E   I+  + +E   PD +TFP ++KAC+ +L  + G  +H  V++ G + D 
Sbjct: 84  VLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDA 143

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK-------TV 224
           FV TSL+ LYGK   I  A KVFD++PE+NV +WTA+I GY  VG   EA        +V
Sbjct: 144 FVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSV 203

Query: 225 FDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER---------------------- 262
           FD M E+  VSW+++I G    G  + A  LF +M                         
Sbjct: 204 FDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGAL 263

Query: 263 -----------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
                            N V  T +ID YAK G M SA  +F     +D+V W+A ISG 
Sbjct: 264 ELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGL 323

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           A +G    A  +F  M    ++PD    V L+ AC+  G +D      + + R       
Sbjct: 324 AMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPE 383

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIH 410
                 +VD+  + G +D A +L ++MP   + + + +++ G  +H
Sbjct: 384 IEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLH 429



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 121/312 (38%), Gaps = 80/312 (25%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL--CHSLATPLSYSTAVFNRI 96
           S ++L  KC    +  +V   I +K +    ++++ +I +  C         + +VF+ +
Sbjct: 148 SLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGM 207

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
           +  +   W+++++GY+ N    E   +F +++ E   PD Y    V+ AC+ + ++  G 
Sbjct: 208 LEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGN 267

Query: 157 AIHAAVIRWG---VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
                   W    +D + F+G                          N V  TA+I  YA
Sbjct: 268 --------WASNLMDRNEFLG--------------------------NPVLGTALIDMYA 293

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PERN---- 263
             G +  A  VF  M ++  V WNA I GL   G +++A  LF +M      P+ N    
Sbjct: 294 KCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVG 353

Query: 264 ------------------------------VVSYTTMIDGYAKVGDMTSARSLFEAAP-D 292
                                         +  Y  M+D   + G +  A  L ++ P +
Sbjct: 354 LLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPME 413

Query: 293 RDVVAWSALISG 304
            + + W AL+ G
Sbjct: 414 ANAIVWGALLGG 425


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 266/477 (55%), Gaps = 51/477 (10%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           ++AC   ++ R+   +H  V+R  + +  ++ T ++ L    + ++ A +VF ++ + N+
Sbjct: 21  LRAC---VTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNL 77

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMP--------------------------------- 229
               AMI  YA      +A  V+  M                                  
Sbjct: 78  HLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALEL 137

Query: 230 -------------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                        + S +  N+LI    + GDL  A ++FDEM ER+VVS+  +I  +A+
Sbjct: 138 GKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHAR 197

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           +G M  A +LF + PD+ +V W+A++SGY   G    AV  F  M ++  +PD+  +V++
Sbjct: 198 LGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAV 257

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC+Q+G L+L  W+ +Y  R  M L+  H+  AL++M AKCG +D+A +LF+ M ++D
Sbjct: 258 LPACAQLGALELGRWIYAYCKRHGM-LTSTHICNALMEMYAKCGCIDQALQLFDGMADKD 316

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           V+S+ ++I GL+ HG   +AV LF  M  EG + P+ + F  +L+ACS+ GLV++G   F
Sbjct: 317 VISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHF 376

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           + M +VY + P  EHY C+VDLLGR+G ++ A +L+  MPV   A  WG+LL AC+ + D
Sbjct: 377 DRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGD 436

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++   L A RL ELEP + G+ V+L+N+YA A RW DV   R  ++ R +RK PGCS
Sbjct: 437 VDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCS 493



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 225/451 (49%), Gaps = 55/451 (12%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           + +  ++ C     L +VH H+++  + Q   L    + LC++    ++++  VF ++ +
Sbjct: 16  AVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNA-HRRVTHAARVFAQVRD 74

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-------DKYTFPLVIKACSHVLS 151
           PN  L N ++K Y+QN +  +   +++R++R    P       D++T+P ++KAC    +
Sbjct: 75  PNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAA 134

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  V+R G D    V  SLI++Y +  +++ A KVFDEM ER+VVSW  +I  
Sbjct: 135 LELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISA 194

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE---- 261
           +A +G + +A  +F+ MP+++ V+W A++ G   +GD   A   F  M      P+    
Sbjct: 195 HARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSI 254

Query: 262 ----------------RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPD 292
                           R + +Y               +++ YAK G +  A  LF+   D
Sbjct: 255 VAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMAD 314

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLD--LS 349
           +DV++WS +I G A +G+  EAV +F++M  +  V+P+    V L+SACS  G +D  LS
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLS 374

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLS 408
           ++ D       ++    H    +VD+  + G + RA +L   MP   D   + S++    
Sbjct: 375 HF-DRMNDVYGVEPGVEH-YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACR 432

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
            HG    AV   +R++   L PD+V   ++L
Sbjct: 433 SHGDVDTAVLAAERLVE--LEPDDVGNLVML 461


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 276/529 (52%), Gaps = 50/529 (9%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS---H 148
           +F+ I  P+    +TL+   + +    E   I+  L      PD   F    KAC+    
Sbjct: 120 LFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGD 179

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
            L V+E   +H    R GV  DVFVG +LI  YGK K +  AR+VFD++  R+VVSWT++
Sbjct: 180 ALRVKE---VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236

Query: 209 IVGYASVGDLVEAKTVFDLM------PERSNVS--------------------------- 235
              Y   G   +   VF  M      P    VS                           
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 296

Query: 236 ------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF-- 287
                  +AL+    K   +R AR +FD MP R+VVS+  ++  Y K  +     SLF  
Sbjct: 297 VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLK 356

Query: 288 --EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
                   D   W+A+I G  +NG+ +EAV++F  M     +P+E  + S++ ACS   N
Sbjct: 357 MSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN 416

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L +   +  Y+ R H  +       AL+ M AKCG+++ +  +F+ M  +DVV++ +MI 
Sbjct: 417 LRMGKEIHCYVFR-HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMII 475

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
             ++HG+G++A+ LFD+ML   + P+ V FT VL+ CSH  LVE+G + F +M   + + 
Sbjct: 476 ANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVE 535

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P   HY+C+VD+  R G L  AY+ +  MP+EP ASAWGALL AC++Y ++EL ++ A +
Sbjct: 536 PDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKK 595

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LFE+EP N G+YV L NI  TA  W +   VR  MKERG+ K PGCS L
Sbjct: 596 LFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 644



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 9/297 (3%)

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           +G  LI +     + + AR++FD +P+ +  + + +I    + G   EA  ++  + ER 
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 233 NVSWNALIGGLVKI----GDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSAR 284
                 +     K     GD    +++ D+     V+S       +I  Y K   +  AR
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 219

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F+    RDVV+W++L S Y + G P + + +F +M    V+P+   + S++ AC+++ 
Sbjct: 220 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 279

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           +L     +  +  R  M +    V +ALV + AKC ++  A  +F+ MP+RDVVS+  ++
Sbjct: 280 DLKSGKEIHGFAVRHGM-VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 338

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
                +    +  SLF +M  +G+  DE  +  V+  C   G  E+    F  MQ +
Sbjct: 339 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 395



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ S  VF+ +   +   WNT++   + +    E   +F +++     P+  TF  V+  
Sbjct: 452 LNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSG 511

Query: 146 CSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVV 203
           CSH   V EG  I  ++ R   V+ D    + ++D+Y +   ++ A K    MP E    
Sbjct: 512 CSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTAS 571

Query: 204 SWTAMIVGYASVGDL----VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           +W A++       ++    + AK +F++ P     ++ +L   LV       A Q+   M
Sbjct: 572 AWGALLAACRVYKNVELAKISAKKLFEIEPNNPG-NYVSLFNILVTAKMWSEASQVRILM 630

Query: 260 PERNV 264
            ER +
Sbjct: 631 KERGI 635



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
           +H+   L+ +    G+ +RA +LF+ +P  D  +  ++I  L+ HG   +A+ ++  +  
Sbjct: 98  SHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE 157

Query: 426 EGLTPDEVAFTIVLTACSHVG 446
            G+ PD   F     AC+  G
Sbjct: 158 RGIKPDMPVFLAAAKACAVSG 178


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/548 (31%), Positives = 284/548 (51%), Gaps = 55/548 (10%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYT 138
           +S    LS +  VF+ +   +   WN++++ Y++  +      +F ++  E    PD  T
Sbjct: 172 YSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDIT 231

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
              V+  C+ V +   G   H   +   + +++FVG  L+D+Y K   +  A  VF  MP
Sbjct: 232 LVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMP 291

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIG----DLR 250
            ++VVSW AM+ GY+ +G   +A  +F+ M E       V+W+A I G  + G     L 
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351

Query: 251 SARQLFDEMPERNVVSYTT----------------------------------------- 269
             RQ+     + N V+  +                                         
Sbjct: 352 VCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVIN 411

Query: 270 -MIDGYAKVGDMTSARSLFEA--APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
            +ID YAK   +  AR++F++    +RDVV W+ +I GY+Q+G  ++A+++ S+M  ++ 
Sbjct: 412 QLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDC 471

Query: 327 Q--PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384
           Q  P+ F +   + AC+ +  L +   + +Y  R+  +     V   L+DM AKCG++  
Sbjct: 472 QTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGD 531

Query: 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
           A  +F+ M  ++ V++ S++ G  +HG+G +A+ +F+ M   G   D V   +VL ACSH
Sbjct: 532 ARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSH 591

Query: 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            G+++ G  +F  M+  + + P PEHYAC+VDLLGR G L +A  L+  MP+EP    W 
Sbjct: 592 SGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWV 651

Query: 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564
           ALL  C+++  +ELGE  A ++ EL   N GSY LLSN+YA A RW DV  +RS M+ +G
Sbjct: 652 ALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKG 711

Query: 565 LRKIPGCS 572
           ++K PGCS
Sbjct: 712 IKKRPGCS 719



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/522 (31%), Positives = 251/522 (48%), Gaps = 61/522 (11%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI--VNPN 100
            I KCK  + +  +H  ++  G+    +L +H IS   SL   LS++ ++  R    +  
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGI-LTLNLTSHLISTYISLGC-LSHAVSLLRRFPPSDAG 91

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
            + WN+L++ Y  N R  +  + F  +      PD YTFP V KAC  + SVR G + HA
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
                G   +VFVG +L+ +Y +   +S ARKVFDEMP  +VVSW ++I  YA +G    
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 221 AKTVF-----------------DLMPERSNVS-----------------------WNALI 240
           A  +F                 +++P  ++V                         N L+
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR----DVV 296
               K G +  A  +F  MP ++VVS+  M+ GY+++G    A  LFE   +     DVV
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVV 331

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
            WSA ISGYAQ G   EA+ +   M S  ++P+E  L+S++S C+ VG L     +  Y 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 357 SRSHMDLSR-AH-----VIAALVDMNAKCGNMDRAAELFETM--PNRDVVSYCSMIKGLS 408
            +  MDL +  H     VI  L+DM AKC  +D A  +F+++    RDVV++  MI G S
Sbjct: 392 IKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYS 451

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTI--VLTACSHVGLVEDGWRFFE-AMQNVYAIV 465
            HG   +A+ L   M  E       AFTI   L AC+ +  +  G +    A++N    V
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAV 511

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
           P      C++D+  + G +  A  + ++M +E +   W +L+
Sbjct: 512 PLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLM 551



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 151/319 (47%), Gaps = 16/319 (5%)

Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP- 198
           P  I  C  +  V+    IH  ++ +G+   + + + LI  Y     +S A  +    P 
Sbjct: 32  PPFIHKCKTISQVK---LIHQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPP 87

Query: 199 -ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-IGDLRSARQLF 256
            +  V  W ++I  Y + G   +  + F LM   S    N     + K  G++ S R   
Sbjct: 88  SDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGD 147

Query: 257 DEMPERNVVSYTT-------MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
                  V  + +       ++  Y++ G ++ AR +F+  P  DVV+W+++I  YA+ G
Sbjct: 148 SSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLG 207

Query: 310 QPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368
           +P  A+++FS M ++   +PD+  LV+++  C+ VG   L      +   S M +    V
Sbjct: 208 KPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEM-IQNMFV 266

Query: 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
              LVDM AK G MD A  +F  MP +DVVS+ +M+ G S  G    AV LF++M  E +
Sbjct: 267 GNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKI 326

Query: 429 TPDEVAFTIVLTACSHVGL 447
             D V ++  ++  +  GL
Sbjct: 327 KMDVVTWSAAISGYAQRGL 345



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 134/268 (50%), Gaps = 22/268 (8%)

Query: 270 MIDGYAKVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
           +I  Y  +G ++ A SL    P  D  V  W++LI  Y  NG+ ++ +  F  M S +  
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PD +    +  AC ++ ++   +   + LSR    +S   V  ALV M ++CG++  A +
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHA-LSRVTGFMSNVFVGNALVAMYSRCGSLSDARK 183

Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHVG 446
           +F+ MP  DVVS+ S+I+  +  G  + A+ +F +M +E G  PD++    VL  C+ VG
Sbjct: 184 VFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVG 243

Query: 447 LVEDGWRFF------EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
               G +F       E +QN++          C+VD+  + G +  A  + ++MPV+   
Sbjct: 244 TRSLGKQFHGFAVTSEMIQNMFV-------GNCLVDMYAKFGMMDEANTVFSNMPVKDVV 296

Query: 501 SAWGALLGACKLYSDIELGELVANRLFE 528
           S W A++     YS I   E  A RLFE
Sbjct: 297 S-WNAMVAG---YSQIGRFE-DAVRLFE 319



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 43/261 (16%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLC----HSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110
           Q+H++     L    + V  F+S C    ++    +  +  VF+ ++  N   W +L+ G
Sbjct: 498 QIHAY----ALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTG 553

Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA-IHAAVIRWGVDE 169
           Y  +    E   IF  + R     D  T  +V+ ACSH   + +G    +     +GV  
Sbjct: 554 YGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSP 613

Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
                  L+DL G+   ++ A ++ +EMP E   V W A++                   
Sbjct: 614 GPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS------------------ 655

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG---DMTSARS 285
                      I G V++G+   A +   E+   N  SYT + + YA  G   D+T  RS
Sbjct: 656 --------CCRIHGKVELGEY--AAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRS 705

Query: 286 LF--EAAPDRDVVAWSALISG 304
           L   +    R   +W   I G
Sbjct: 706 LMRHKGIKKRPGCSWVEGIKG 726


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 282/534 (52%), Gaps = 64/534 (11%)

Query: 41  LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
           +++++ C     L Q+H+ ++  GL  D  LV  F++   S+A            + NPN
Sbjct: 13  ISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVA---SIA------------LNNPN 57

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
              ++  +   SQN                   P  +TF  +I+A S   +       ++
Sbjct: 58  NLHYSNQVLDNSQN-------------------PTLFTFNSMIRAHSKSSTPHRSFHFYS 98

Query: 161 AVIRWG--VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
            ++     +  D +  T L+                     R      A   G +  G  
Sbjct: 99  RILHSAGYLAPDNYTFTFLV---------------------RTSAQLLAHGTGSSVHGAA 137

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
           V  K  F+  P   +     LI    ++G L +  ++F  + E ++V  T M+   AK+G
Sbjct: 138 V--KYGFEYDPHVQS----GLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMG 191

Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
           D+  AR LF+    +D +AW+A+ISGY Q GQ  EA+ +F+ M  + V+ +E  +VS++S
Sbjct: 192 DVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLS 251

Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
           ACS +G LD   W  +Y+ R+ + ++   +  AL+DM AKCGNM++A E+F  M  ++V 
Sbjct: 252 ACSHLGALDQGRWAHAYIERNKLRMTLT-LGTALIDMYAKCGNMNKAMEVFWGMKEKNVY 310

Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
           ++ S I GL+++G G + + LF  M  + + P+E+ F  VL  CS VGLVE+G + FE+M
Sbjct: 311 TWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESM 370

Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
             VY I P  EHY CMVDL GR GHL  A   +NSMPV PH  AWGALL ACK+Y ++E+
Sbjct: 371 SKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEM 430

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           GEL + ++ ELE +N G+YVLLSNIYA +  W  V  VR  M  +G+RK PGCS
Sbjct: 431 GELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCS 484


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 276/529 (52%), Gaps = 50/529 (9%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS---H 148
           +F+ I  P+    +TL+   + +    E   I+  L      PD   F    KAC+    
Sbjct: 34  LFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGD 93

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
            L V+E   +H    R GV  DVFVG +LI  YGK K +  AR+VFD++  R+VVSWT++
Sbjct: 94  ALRVKE---VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150

Query: 209 IVGYASVGDLVEAKTVFDLM------PERSNVS--------------------------- 235
              Y   G   +   VF  M      P    VS                           
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 210

Query: 236 ------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF-- 287
                  +AL+    K   +R AR +FD MP R+VVS+  ++  Y K  +     SLF  
Sbjct: 211 VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLK 270

Query: 288 --EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
                   D   W+A+I G  +NG+ +EAV++F  M     +P+E  + S++ ACS   N
Sbjct: 271 MSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN 330

Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
           L +   +  Y+ R H  +       AL+ M AKCG+++ +  +F+ M  +DVV++ +MI 
Sbjct: 331 LRMGKEIHCYVFR-HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMII 389

Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
             ++HG+G++A+ LFD+ML   + P+ V FT VL+ CSH  LVE+G + F +M   + + 
Sbjct: 390 ANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVE 449

Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
           P   HY+C+VD+  R G L  AY+ +  MP+EP ASAWGALL AC++Y ++EL ++ A +
Sbjct: 450 PDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKK 509

Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           LFE+EP N G+YV L NI  TA  W +   VR  MKERG+ K PGCS L
Sbjct: 510 LFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 9/297 (3%)

Query: 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS 232
           +G  LI +     + + AR++FD +P+ +  + + +I    + G   EA  ++  + ER 
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 233 NVSWNALIGGLVKI----GDLRSARQLFDEMPERNVVS----YTTMIDGYAKVGDMTSAR 284
                 +     K     GD    +++ D+     V+S       +I  Y K   +  AR
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 133

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F+    RDVV+W++L S Y + G P + + +F +M    V+P+   + S++ AC+++ 
Sbjct: 134 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 193

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           +L     +  +  R  M +    V +ALV + AKC ++  A  +F+ MP+RDVVS+  ++
Sbjct: 194 DLKSGKEIHGFAVRHGM-VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 252

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
                +    +  SLF +M  +G+  DE  +  V+  C   G  E+    F  MQ +
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 309



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L+ S  VF+ +   +   WNT++   + +    E   +F +++     P+  TF  V+  
Sbjct: 366 LNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSG 425

Query: 146 CSHVLSVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVV 203
           CSH   V EG  I  ++ R   V+ D    + ++D+Y +   ++ A K    MP E    
Sbjct: 426 CSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTAS 485

Query: 204 SWTAMIVGYASVGDL----VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
           +W A++       ++    + AK +F++ P     ++ +L   LV       A Q+   M
Sbjct: 486 AWGALLAACRVYKNVELAKISAKKLFEIEPNNPG-NYVSLFNILVTAKMWSEASQVRILM 544

Query: 260 PERNV 264
            ER +
Sbjct: 545 KERGI 549



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
           +H+   L+ +    G+ +RA +LF+ +P  D  +  ++I  L+ HG   +A+ ++  +  
Sbjct: 12  SHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE 71

Query: 426 EGLTPDEVAFTIVLTACSHVG 446
            G+ PD   F     AC+  G
Sbjct: 72  RGIKPDMPVFLAAAKACAVSG 92


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/563 (30%), Positives = 291/563 (51%), Gaps = 48/563 (8%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+HII  G+ Q+  LV+  I+   S+   L+ +  V     + +   WN ++  Y +N
Sbjct: 113 QIHAHIISLGIHQNPILVSKLINFYASVDL-LADAQIVAECSNSFDPLHWNMVISLYVKN 171

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
             F +  +++ R++ +  +PD YT+P V+KAC  +L    G A+H A+    +   +FV 
Sbjct: 172 CLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVH 231

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---- 230
            +L+ +YG+  ++  AR++FD MP R+ VSW  MI  YAS G   EA  +F  M E    
Sbjct: 232 NALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIE 291

Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY----------------------- 267
           R+ + WN + GG +  G+ + A +LF +M  R V+                         
Sbjct: 292 RNIIIWNTIAGGCLHTGNFKGALKLFSQM--RAVIQLDSVAMVVGLNACSHIGAVKLGKE 349

Query: 268 -----------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310
                             T+I  Y++  D+  A  LF    ++ ++ W+A++SG+A   +
Sbjct: 350 IHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDR 409

Query: 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI- 369
            +E   +  +M  + V+P+   + S++  C+++ NL        Y+ +         ++ 
Sbjct: 410 SEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLW 469

Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
            +LV+M ++ G +  A ++F+++  +D V+Y SMI G  + G G  A+ LF  M    + 
Sbjct: 470 NSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIK 529

Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           PD V    VL ACSH GLV  G   F  M  VY I P  EHY+CMVDL GR G L  A E
Sbjct: 530 PDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKE 589

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
           ++  M  +P ++ W  L+GACK++ +  +GE  A +L E++P ++G Y+L++N+YA A+R
Sbjct: 590 VITGMSCKPTSAIWATLIGACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAANR 649

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
                  R+ M++ G ++ PGC+
Sbjct: 650 LDKEAEARTYMRDSGAKRTPGCA 672



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 195/454 (42%), Gaps = 61/454 (13%)

Query: 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF-PL--VIKACSHVLSVREGTAIHAAVIR 164
           LK +   +     F  F+ +    A      F P+  ++  C+++ S+ +G  IHA +I 
Sbjct: 61  LKDFITYNHLSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQGKQIHAHIIS 120

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            G+ ++  + + LI+ Y     ++ A+ V +     + + W  +I  Y       +A +V
Sbjct: 121 LGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVKNCLFEDAISV 180

Query: 225 FDLM----------------------------------PERSNVSW-----NALIGGLVK 245
           +  M                                   + S++ W     NAL+    +
Sbjct: 181 YRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGR 240

Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF----EAAPDRDVVAWSAL 301
            G L  AR+LFD MP R+ VS+ TMI  YA  G    A  LF    EA  +R+++ W+ +
Sbjct: 241 FGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTI 300

Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
             G    G    A+K+FS M    +Q D   +V  ++ACS +G + L   +  +  R+  
Sbjct: 301 AGGCLHTGNFKGALKLFSQM-RAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCF 359

Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFD 421
           D+   +V   L+ M ++C +++ A  LF  +  + ++++ +M+ G +      +   L  
Sbjct: 360 DVFD-NVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLR 418

Query: 422 RMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-------CM 474
            ML EG+ P+ V    +L  C+ +  ++ G  F   M      V   E +         +
Sbjct: 419 EMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYM------VKREEQFKGYLLLWNSL 472

Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
           V++  R+G +  A ++ +S+  +   +    ++G
Sbjct: 473 VEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMG 506


>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 670

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 177/468 (37%), Positives = 268/468 (57%), Gaps = 12/468 (2%)

Query: 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176
           F E + +F+ ++  +  P   T   +I++C  + ++  G  +H  V+ +G+  D  V T+
Sbjct: 204 FREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTT 263

Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW 236
           LID+Y K  ++  AR +F+ MP RN+VSW  MI GY   G LVE   +F  +    +V +
Sbjct: 264 LIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLI-MDDVGF 322

Query: 237 NA-----LIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLF 287
           ++     LI    +  DL   + L   +  R    N+V  T ++D YAK G +  A S+F
Sbjct: 323 DSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVF 382

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
           E   +++V++W+A++ G AQNG   +A+K+F  M ++ V  +   LVSL+  C+ +G L 
Sbjct: 383 ERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLR 442

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE-TMPNRDVVSYCSMIKG 406
               V + L+R H   S   V+ AL+DM AKC  ++ A  +F+  +  +DV+ Y SMI G
Sbjct: 443 EGRSVHATLTRFHFA-SEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISG 501

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
             +HG G +A+ ++ RM  EGL P+E  F  +L+ACSH GLVE+G   F+ M   +   P
Sbjct: 502 YGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTP 561

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + + YAC+VDLL R G L+ A EL+N MP  P +     LL  C L+ DIELG  +A+RL
Sbjct: 562 TDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRL 621

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
             LE +N   Y+ LSNIYA A RW  V  VR  M E+ ++KIPG SS+
Sbjct: 622 LSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMMEQEIKKIPGYSSI 669



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 208/410 (50%), Gaps = 17/410 (4%)

Query: 30  NFPKPSCLLSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL 86
           N  +PS + + ++LI+ C    +L     +H  ++  G+ +D  ++   I + +  +  +
Sbjct: 217 NKIEPSAV-TMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDM-YCKSGDV 274

Query: 87  SYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146
             +  +F  + + N   WN ++ GY QN   +E   +F +LI ++   D  T   +I+ C
Sbjct: 275 ESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLC 334

Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
           S    +  G  +H  + R G+D ++ + T+++DLY K   ++ A  VF+ M  +NV+SWT
Sbjct: 335 SRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWT 394

Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNAL-IGGLVK----IGDLRSARQLFDEMPE 261
           AM+VG A  G   +A  +FD M +   V++NAL +  LV     +G LR  R +   +  
Sbjct: 395 AMLVGLAQNGHARDALKLFDQM-QNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTR 453

Query: 262 ----RNVVSYTTMIDGYAKVGDMTSARSLFE-AAPDRDVVAWSALISGYAQNGQPDEAVK 316
                 VV  T +ID YAK   + SA  +F+     +DV+ ++++ISGY  +G   +A+ 
Sbjct: 454 FHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALC 513

Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
           ++  M  + +QP+E   VSL+SACS  G ++    +   + + H       + A +VD+ 
Sbjct: 514 VYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLL 573

Query: 377 AKCGNMDRAAELFETMPNRDVVSYC-SMIKGLSIHGHGRQAVSLFDRMLS 425
           ++ G + +A EL   MP         +++ G  +H      V L DR+LS
Sbjct: 574 SRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLS 623


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 285/511 (55%), Gaps = 38/511 (7%)

Query: 89  STAVFNRI-VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
           +T  F+ I  N +   W +++  Y QN    E  T+F R+       +++T   ++ AC+
Sbjct: 186 ATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACT 245

Query: 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP----ERNVV 203
            +  + +G  +H  VI+ G+  + ++ TSL+++Y K   I  A KVFDE      +R++V
Sbjct: 246 KLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLV 305

Query: 204 SWTAMIVGYASVG------DLVEAKTVFDLMP-------------ERSNVSWNALIGGL- 243
           SWTAMIVGY+  G      +L + K    ++P             +  N     L+ GL 
Sbjct: 306 SWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLA 365

Query: 244 VKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
           VK G         D+ P RN      ++D YAK G ++ AR +FEA  ++DVV+W+++IS
Sbjct: 366 VKCG--------LDDHPVRN-----ALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIIS 412

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
           G+ Q+G+  EA+ +F  M  +   PD   +V ++SAC+ +G L L   V     +  + +
Sbjct: 413 GFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVV 472

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
           S  +V  AL++  AKCG+   A  +F++M  ++ V++ +MI G  + G G  +++LF  M
Sbjct: 473 SSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDM 532

Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
           L E + P+EV FT +L ACSH G+V +G R F  M      VPS +HYACMVD+L R G+
Sbjct: 533 LEELVEPNEVVFTTILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGN 592

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543
           L+ A + +  MPV+P  S +GA L  C L+S  ELG     ++ EL P  A  YVL+SN+
Sbjct: 593 LEEALDFIERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNL 652

Query: 544 YATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           YA+  RW  V  VR  +K+RGL K+PGCSS+
Sbjct: 653 YASDGRWGMVKQVREMIKQRGLNKVPGCSSV 683



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 170/333 (51%), Gaps = 21/333 (6%)

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188
           +++  P   TF L  + C+++ S++    +HA+ +  G+  D+ + T L+ LY    ++ 
Sbjct: 27  QKQQPPSPPTFYLS-RLCTNLPSLK---TLHASFLIHGLTNDLLLSTKLLSLYASFGQLR 82

Query: 189 CARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGG 242
            ARK+F+ +P R++  +  MI  Y          +++ LM           V ++ +   
Sbjct: 83  HARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKS 142

Query: 243 LVKIGDLRSAR----QLFDEMPERNVVSYTTMIDGYAKVGDMTSA-RSLFEAAPDRDVVA 297
             +  D ++           +P  + V  T ++D YAK   +  A R+  E   + DVV+
Sbjct: 143 CAESRDFQTLTITHCHFVKSLPSDSFV-LTCLVDAYAKFARVDEATRAFDEIHENDDVVS 201

Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
           W+++I  Y QN    E + +F+ M    V  +EF + SL+SAC+++  L    WV  ++ 
Sbjct: 202 WTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVI 261

Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE----TMPNRDVVSYCSMIKGLSIHGHG 413
           ++ + ++ +++  +L++M  KCGN+  A ++F+    +  +RD+VS+ +MI G S  G+ 
Sbjct: 262 KNGICVN-SYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYP 320

Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
             A+ LF      G+ P+ V  + +L++C+ +G
Sbjct: 321 HLALELFKDKKWSGILPNSVTVSSLLSSCAQLG 353



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 5/181 (2%)

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFI 332
           YA  G +  AR +F   P RD+  +  +I  Y  N  P   V ++  M  S +  P +++
Sbjct: 75  YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYV 134

Query: 333 LVSLM-SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF-E 390
           L S++  +C++  +         +  +S    S + V+  LVD  AK   +D A   F E
Sbjct: 135 LFSIVFKSCAESRDFQTLTITHCHFVKSLP--SDSFVLTCLVDAYAKFARVDEATRAFDE 192

Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
              N DVVS+ SMI     +   R+ ++LF+RM    +  +E     +++AC+ +  +  
Sbjct: 193 IHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQ 252

Query: 451 G 451
           G
Sbjct: 253 G 253


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 266/477 (55%), Gaps = 51/477 (10%)

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           ++AC   ++ R+   +H  V+R  + +  ++ T ++ L    + ++ A +VF ++ + N+
Sbjct: 21  LRAC---VTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNL 77

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMP--------------------------------- 229
               AMI  YA      +A  V+  M                                  
Sbjct: 78  HLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALEL 137

Query: 230 -------------ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK 276
                        + S +  N+LI    + GDL  A ++FDEM ER+VVS+  +I  +A+
Sbjct: 138 GKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHAR 197

Query: 277 VGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
           +G M  A +LF + PD+ +V W+A++SGY   G    AV  F  M ++  +PD+  +V++
Sbjct: 198 LGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAV 257

Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
           + AC+Q+G L+L  W+ +Y  R  M L+  H+  AL++M AKCG +D+A +LF+ M ++D
Sbjct: 258 LPACAQLGALELGRWIYAYCKRHGM-LTSTHICNALMEMYAKCGCIDQALQLFDGMADKD 316

Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFF 455
           V+S+ ++I GL+ HG   +AV LF  M  EG + P+ + F  +L+ACS+ GLV++G   F
Sbjct: 317 VISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHF 376

Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
           + M +VY + P  EHY C+VDLLGR+G ++ A +L+  MPV   A  WG+LL AC+ + D
Sbjct: 377 DRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGD 436

Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           ++   L A RL ELEP + G+ V+L+N+YA A RW DV   R  ++ R +RK PGCS
Sbjct: 437 VDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCS 493



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 225/451 (49%), Gaps = 55/451 (12%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           + +  ++ C     L +VH H+++  + Q   L    + LC++    ++++  VF ++ +
Sbjct: 16  AVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNA-HRRVTHAARVFAQVRD 74

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-------DKYTFPLVIKACSHVLS 151
           PN  L N ++K Y+QN +  +   +++R++R    P       D++T+P ++KAC    +
Sbjct: 75  PNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAA 134

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  V+R G D    V  SLI++Y +  +++ A KVFDEM ER+VVSW  +I  
Sbjct: 135 LELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISA 194

Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE---- 261
           +A +G + +A  +F+ MP+++ V+W A++ G   +GD   A   F  M      P+    
Sbjct: 195 HARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSI 254

Query: 262 ----------------RNVVSY-------------TTMIDGYAKVGDMTSARSLFEAAPD 292
                           R + +Y               +++ YAK G +  A  LF+   D
Sbjct: 255 VAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMAD 314

Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLD--LS 349
           +DV++WS +I G A +G+  EAV +F++M  +  V+P+    V L+SACS  G +D  LS
Sbjct: 315 KDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLS 374

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLS 408
           ++ D       ++    H    +VD+  + G + RA +L   MP   D   + S++    
Sbjct: 375 HF-DRMNDVYGVEPGVEH-YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACR 432

Query: 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
            HG    AV   +R++   L PD+V   ++L
Sbjct: 433 SHGDVDTAVLAAERLVE--LEPDDVGNLVML 461


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/443 (38%), Positives = 266/443 (60%), Gaps = 15/443 (3%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           V+  C    ++REG  +HA +I+   +  V++ T LI LY K + +  AR+V DEMPERN
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 542

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFD 257
           VVSWTAMI GY+  G   EA  +F  M       +  ++  ++         +  RQ+  
Sbjct: 543 VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 602

Query: 258 EMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
            + + +  S+    ++++D YAK G +  AR +F+  P+RDVV+ +A+ISGYAQ G  +E
Sbjct: 603 LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE 662

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI--AA 371
           A+ +F  +  + ++ +     S+++A S +  LD    V S++ R+ +     +V+   +
Sbjct: 663 ALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF---YVVLQNS 719

Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTP 430
           L+DM +KCG++  +  +F++MP R V+S+ +M+ G S HG GR+AV LF  M  E  + P
Sbjct: 720 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 431 DEVAFTIVLTACSHVGLVEDGWR-FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
           D V F  VL+ CSH G+ + G   F+E +       P  EHY C+VDL GR G ++ A+E
Sbjct: 780 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
            +  MP EP A+ WG+LLGAC+++ ++ +GE VA RL E+E +NAG+YV+LSN+YA+A R
Sbjct: 840 FIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGR 899

Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
           W DV  VR  MKE+ + K PG S
Sbjct: 900 WDDVRTVRELMKEKAVIKEPGRS 922



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 42  TLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           +++ +C  QT + +   VH+H+IK   E    L    I L ++    L  +  V + +  
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVL-YNKCRCLGDARRVLDEMPE 540

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
            N   W  ++ GYSQ     E   +FV ++     P+++TF  V+ +C+     + G  I
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H+ VI+   +  +FVG+SL+D+Y K  +I  AR+VFD +PER+VVS TA+I GYA +G  
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 660

Query: 219 VEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERN----VVSYTTM 270
            EA  +F  +     RSN V++ +++  L  +  L   RQ+   +        VV   ++
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 720

Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPD 329
           ID Y+K G +T +R +F++ P+R V++W+A++ GY+++G   EAV++F  M  +N V+PD
Sbjct: 721 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 780

Query: 330 EFILVSLMSACSQVGNLD--LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
               ++++S CS  G  D  L  + +    +   +    H    +VD+  + G ++ A E
Sbjct: 781 SVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY-GCVVDLFGRAGRVEEAFE 839

Query: 388 LFETMP 393
             + MP
Sbjct: 840 FIKKMP 845



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 35/263 (13%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S LT +       H  QVHSH+++  L     L    I + +S    L+YS  +F+ +  
Sbjct: 684 SVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM-YSKCGSLTYSRRIFDSMPE 742

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE--AVPDKYTFPLVIKACSHVLSVREGT 156
                WN +L GYS++    E   +F +L++EE    PD  TF  V+  CSH      G 
Sbjct: 743 RTVISWNAMLVGYSKHGLGREAVELF-KLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGL 801

Query: 157 AIHAAVI--RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYA 213
            I   ++  + G + ++     ++DL+G+   +  A +   +MP E     W        
Sbjct: 802 EIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW-------- 853

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
             G L+ A            V  N  IG  V       AR+L  E+   N  +Y  + + 
Sbjct: 854 --GSLLGA----------CRVHQNVHIGEFV-------ARRLL-EIESENAGNYVILSNL 893

Query: 274 YAKVGDMTSARSLFEAAPDRDVV 296
           YA  G     R++ E   ++ V+
Sbjct: 894 YASAGRWDDVRTVRELMKEKAVI 916


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 256/460 (55%), Gaps = 42/460 (9%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           P +   P +++A +   S+    A H    R G + D FVGT+L+  Y     +  AR+V
Sbjct: 67  PGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRV 126

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN---------------- 237
           FD MP+R++V+W  M+  Y    +  EA  +F  M +RS V  +                
Sbjct: 127 FDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSM-KRSRVVPDQVIIATVLSTCAHTRN 185

Query: 238 ------------------------ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
                                   AL+       D+  A +L++ + E+ +V  TTM+ G
Sbjct: 186 LRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYG 245

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YAK G +  A S+F   P +DVV+WSA+I+GYA++ +P EA+ +F DM    V+PDE  +
Sbjct: 246 YAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITM 305

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           +S++SAC+ VG L+ +  + S++  +H       +  AL+DM +KCG++  A ++F  MP
Sbjct: 306 LSVISACANVGALEKARCIHSFVE-NHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMP 364

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            ++VV++ S+I   ++HG GR A++LF+ M SEG+ P+ V F  +L AC H GLVE+G  
Sbjct: 365 QKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRL 424

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
            F+ M   Y I P  EHY CMVDLLGR   L  A +L+ SM + P+   WG+LL AC+++
Sbjct: 425 LFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMH 484

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553
            D+ELG   A ++ EL+P + G+ VLLSNIYA    W DV
Sbjct: 485 GDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDV 524



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 187/429 (43%), Gaps = 41/429 (9%)

Query: 23  CSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL 82
           C R   +  P    L S L  I   +        H    + G E D   V   +   ++ 
Sbjct: 58  CLRRVGLPAPGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVD-GFVGTALVRAYAA 116

Query: 83  ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
              +  +  VF+ + + +   W  +L  Y Q   + E   +F  + R   VPD+     V
Sbjct: 117 CGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATV 176

Query: 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV 202
           +  C+H  ++R G AIH+ ++      D  V  +L+++Y    ++  A K+++ + E+ +
Sbjct: 177 LSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEI 236

Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF------ 256
           V  T M+ GYA  G +  A ++F+ MP +  VSW+A+I G  +      A  LF      
Sbjct: 237 VLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRS 296

Query: 257 ----DEMPERNVVSY-----------------------------TTMIDGYAKVGDMTSA 283
               DE+   +V+S                                +ID ++K G +T A
Sbjct: 297 GVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLA 356

Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
             +F A P ++VV W+++I+  A +G    A+ +F +M S+ +QP+    + L+ AC   
Sbjct: 357 LDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHA 416

Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCS 402
           G ++    +   + + +           +VD+  +   + +AA+L ++M  R +VV + S
Sbjct: 417 GLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGS 476

Query: 403 MIKGLSIHG 411
           ++    +HG
Sbjct: 477 LLAACRMHG 485



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 147/309 (47%), Gaps = 17/309 (5%)

Query: 91  AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
           ++FN +   +   W+ ++ GY+++S+ +E   +F  + R    PD+ T   VI AC++V 
Sbjct: 257 SIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVG 316

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           ++ +   IH+ V    + + + +G +LID++ K   ++ A  VF+ MP++NVV+WT++I 
Sbjct: 317 ALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIIT 376

Query: 211 GYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
             A  GD   A T+F+ M     + + V++  L+      G +   R LF  M ++  + 
Sbjct: 377 ASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIE 436

Query: 267 -----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKIFSD 320
                Y  M+D   +   +  A  L ++   R +VV W +L++    +G  D  +  F+ 
Sbjct: 437 PMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHG--DLELGTFAA 494

Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA-LVDMNAKC 379
                + P+      L+S        +  NW D     S  D  +   +AA  ++++A  
Sbjct: 495 KKILELDPNHGGAQVLLSNIYA----EYGNWNDVKEGLSKKDYEKKKELAARFLEISADL 550

Query: 380 GNMDRAAEL 388
            N ++  E 
Sbjct: 551 SNFEQKIEF 559



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 23/208 (11%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           V +H + K L   ++L+  F S C SL   L     VFN +   N   W +++   + + 
Sbjct: 328 VENHSMCKILPIGNALIDMF-SKCGSLTLALD----VFNAMPQKNVVTWTSIITASAMHG 382

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
                 T+F  +  E   P+  TF  ++ AC H   V EG  +   +++    E +    
Sbjct: 383 DGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHY 442

Query: 176 S-LIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDL----VEAKTVFDLMP 229
             ++DL G+ K +  A  +   M  R NVV W +++      GDL      AK + +L P
Sbjct: 443 GCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDP 502

Query: 230 ER-------SNV-----SWNALIGGLVK 245
                    SN+     +WN +  GL K
Sbjct: 503 NHGGAQVLLSNIYAEYGNWNDVKEGLSK 530


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 271/474 (57%), Gaps = 10/474 (2%)

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           N   W  LL GY++     E   +F R+ +   V    ++  +++A  + ++ R G A  
Sbjct: 102 NVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVV----SWNTMLEA--YAVAGRAGDAC- 154

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A   R  V  D      L+ +  +   +  AR++F  MPER+V++WT M+ G A  G++ 
Sbjct: 155 ALFDRMPV-RDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVD 213

Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279
           EA+ +FD MPER+ VSWNA+I G  +   L  A  LF +MP R++ S   MI G+ +  D
Sbjct: 214 EARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKD 273

Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
           +  AR LF+  P+R+VV W+ +++GY +  Q + ++ +F  M    ++P++   +  + A
Sbjct: 274 LKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDA 333

Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
           CS +  L     V   + ++   +    V +AL+++ AKCG +  A +LF+    +D++S
Sbjct: 334 CSDLATLCEGKQVHQMICKTAFQVD-TFVGSALMNVYAKCGEVGLARKLFDLSREKDLIS 392

Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
           +  +I   + HG G +A+ L+++M   G  P++V + ++L+ACSH GLV++G + FE+M 
Sbjct: 393 WNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV 452

Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACKLYSDIEL 518
           N  +I    EHY C++DL  R G L  A  L++ + ++P   S W ALLG C  + +  +
Sbjct: 453 NDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESI 512

Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           G L A  L + EP NAG+Y LLSNIYA+A +W +   +RS+M  RGL+K PGCS
Sbjct: 513 GNLAARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCS 566



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 157/316 (49%), Gaps = 72/316 (22%)

Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGYASVGDLVEAKTVFD 226
           + DV   T+L+  Y +R  +  AR +FD     RNVV+WTA++ GYA  G + EA+ +F 
Sbjct: 68  ERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQ 127

Query: 227 LMPERSNVSWNA-------------------------------LIGGLVKIGDLRSARQL 255
            MP+R+ VSWN                                L+  LV+ G +  AR+L
Sbjct: 128 RMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKAREL 187

Query: 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
           F  MPER+V+++TTM+DG A+ G++  AR LF++ P+R+VV+W+A+ISGY +N + DEA+
Sbjct: 188 FGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEAL 247

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
            +F+ M  +++     ++   +       N DL                           
Sbjct: 248 DLFTKMPHRDIASCNIMITGFIQ------NKDLK-------------------------- 275

Query: 376 NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF 435
                   RA +LF+ MP R+VV++ +M+ G         ++ LF  ML  G+ P++V F
Sbjct: 276 --------RARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTF 327

Query: 436 TIVLTACSHVGLVEDG 451
              L ACS +  + +G
Sbjct: 328 LGALDACSDLATLCEG 343



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 139/274 (50%), Gaps = 24/274 (8%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA-PDRDV 295
           N LI  L   G +  AR+LFD  PER+VVS+T ++  YA+ G +  ARSLF+ +   R+V
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           V W+AL+SGYA+ G  DEA  +F  M  +NV     +L +   A  + G        D+ 
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVA-GRAG--------DAC 154

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
                M +  A     L+ M  + G++D+A ELF  MP RDV+++ +M+ G++  G+  +
Sbjct: 155 ALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDE 214

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A  LFD M    +    V++  +++  +    +++    F  M       P  +  +C +
Sbjct: 215 ARLLFDSMPERNV----VSWNAMISGYTRNHRLDEALDLFTKM-------PHRDIASCNI 263

Query: 476 DLLG--RTGHLKSAYELLNSMPVEPHASAWGALL 507
            + G  +   LK A +L + MP E +   W  ++
Sbjct: 264 MITGFIQNKDLKRARKLFDEMP-ERNVVTWTTMM 296



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 148/337 (43%), Gaps = 61/337 (18%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ +   N   WN ++ GY++N R  E   +F ++   +           I +C+    
Sbjct: 218 LFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRD-----------IASCN---- 262

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
                                    +I  + + K++  ARK+FDEMPERNVV+WT M+ G
Sbjct: 263 ------------------------IMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNG 298

Query: 212 Y-------ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL------RSARQLFDE 258
           Y        S+G L     +  + P +        +G L    DL      +   Q+  +
Sbjct: 299 YLKGKQSELSLG-LFRGMLMSGIRPNQVT-----FLGALDACSDLATLCEGKQVHQMICK 352

Query: 259 MP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
              + +    + +++ YAK G++  AR LF+ + ++D+++W+ +I+ YA +G   EA+ +
Sbjct: 353 TAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHL 412

Query: 318 FSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377
           +  M     +P++   V L+SACS  G +D    +   +        R      L+D+ +
Sbjct: 413 YEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCS 472

Query: 378 KCGNMDRAAELFETMPNRDVVS--YCSMIKGLSIHGH 412
           + G +D A  L   +  +      + +++ G + HG+
Sbjct: 473 RAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGN 509



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           L  +  +F+ +   N   W T++ GY +  +      +F  ++     P++ TF   + A
Sbjct: 274 LKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDA 333

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
           CS + ++ EG  +H  + +     D FVG++L+++Y K  E+  ARK+FD   E++++SW
Sbjct: 334 CSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISW 393

Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
             +I  YA  G  +EA  +++ M       ++V++  L+      G +    ++F+ M  
Sbjct: 394 NGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVN 453

Query: 262 RNVVS-----YTTMIDGYAKVGDMTSARSL---FEAAPDRDVVAWSALISGYAQNGQPDE 313
              ++     YT +ID  ++ G +  A+ L    +  P    V WSAL+ G   N   +E
Sbjct: 454 DRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSV-WSALLGGC--NAHGNE 510

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMS 338
           ++   +       +PD     +L+S
Sbjct: 511 SIGNLAARNLIQAEPDNAGTYTLLS 535


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/429 (38%), Positives = 259/429 (60%), Gaps = 13/429 (3%)

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           IHA +IR G  +D F+   L+    K   I  A ++F      NV  +TA+I G+ S G+
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGD----LRSARQLFDEMPE----RNVVSYTT 269
            +EA  ++  M   S +  N L+  ++K       LR  R++     +     N +    
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 270 MIDGYAKVGDMTSARSLFEAAPD----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
           +++ Y K G++  AR +FE  P+    +D V W+A+I G+ +N + + A++ F  M  +N
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
           V+P+EF +V ++SACSQ+G L++  WV SY+ +  ++L+   V  AL++M ++CG++D A
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELN-LFVGNALINMYSRCGSIDEA 296

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F+ M +RDV++Y +MI GLS++G  RQA+ LF  M+   L P  V F  VL ACSH 
Sbjct: 297 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 356

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           GLV+ G+  F +M   Y + P  EHY CMVDLLGR G L+ AY+L+ +M + P     G 
Sbjct: 357 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 416

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LL ACK++ ++ELGE VA  L +    ++G+YVLLS++YA++ +W +   VR+KMKE G+
Sbjct: 417 LLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 476

Query: 566 RKIPGCSSL 574
           +K PGCSS+
Sbjct: 477 QKEPGCSSI 485



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 207/415 (49%), Gaps = 29/415 (6%)

Query: 32  PKPSCLLSALTLIKKCKLQTHLHQV---HSHIIKKGLEQDHSLVAHFISLCHSLATPLSY 88
           PK    L    +I   +   H++QV   H+ +I+ G  QD  +V   +  C S    + Y
Sbjct: 31  PKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSC-SKCHAIDY 89

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           ++ +F    NPN +L+  L+ G+  +  ++E   ++ R++ E  +PD Y    ++KAC  
Sbjct: 90  ASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGS 149

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE----RNVVS 204
            L++REG  +H+  ++ G   +  V   +++LYGK  E+  AR+VF+EMPE    ++ V 
Sbjct: 150 QLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVC 209

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEM 259
           WTAMI G+    +   A   F  M +  NV  N      ++    ++G L   R +   M
Sbjct: 210 WTAMIDGFVRNEETNRALEAFRGM-QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM 268

Query: 260 P----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV 315
                E N+     +I+ Y++ G +  A+++F+   DRDV+ ++ +ISG + NG+  +A+
Sbjct: 269 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAI 328

Query: 316 KIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375
           ++F  M  + ++P     V +++ACS  G +D    +   ++R +    +      +VD+
Sbjct: 329 ELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL 388

Query: 376 NAKCGNMDRAAELFETM---PNR----DVVSYCSMIKGLSIHGHGRQ-AVSLFDR 422
             + G ++ A +L  TM   P+      ++S C M K L +   G Q A  L DR
Sbjct: 389 LGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLEL---GEQVAKELEDR 440


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 296/526 (56%), Gaps = 12/526 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++K G E +  +    IS+  S +  L  +  VF+ + N ++  WN+++ G+  N
Sbjct: 224 QIHALVVKLGFETERLVCNSLISML-SKSGMLRDARVVFDNMENKDSVSWNSMIAGHVIN 282

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
            + +E F  F  +    A P   TF  VIK+C+ +  +     +H   ++ G+  +  V 
Sbjct: 283 GQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL 342

Query: 175 TSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLM----- 228
           T+L+    K KEI  A  +F  M   ++VVSWTAMI GY   GD  +A  +F LM     
Sbjct: 343 TALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV 402

Query: 229 -PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
            P     S    +   V I ++ +  ++     E++    T ++D + K+G+++ A  +F
Sbjct: 403 KPNHFTYSTILTVQHAVFISEIHA--EVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF 460

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ-VGNL 346
           E    +DV+AWSA+++GYAQ G+ +EA KIF  +  + ++P+EF   S+++AC+    ++
Sbjct: 461 ELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASV 520

Query: 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406
           +      +Y  +  ++ +   V ++LV + AK GN++ A E+F+    RD+VS+ SMI G
Sbjct: 521 EQGKQFHAYAIKLRLNNALC-VSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISG 579

Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
            + HG  ++A+ +F+ M    L  D + F  V++AC+H GLV  G  +F  M N + I P
Sbjct: 580 YAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINP 639

Query: 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526
           + EHY+CM+DL  R G L  A +++N MP  P A+ W  +L A +++ +IELG+L A ++
Sbjct: 640 TMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKI 699

Query: 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
             LEPQ++ +YVLLSNIYA A  W +   VR  M +R ++K PG S
Sbjct: 700 ISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYS 745



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 234/483 (48%), Gaps = 54/483 (11%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS------TAVFNRIVNPNTFLWNTLL 108
           QVH   +K GL        H +S+ +SL    + +        VF+ + + +   WN+LL
Sbjct: 123 QVHCQCVKCGL-------VHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLL 175

Query: 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
            GYS N    +V+ +F  +  E   PD YT   VI A ++  +V  G  IHA V++ G +
Sbjct: 176 TGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFE 235

Query: 169 EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM 228
            +  V  SLI +  K   +  AR VFD M  ++ VSW +MI G+   G  +EA   F+ M
Sbjct: 236 TERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNM 295

Query: 229 ----PERSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMIDGYAKVG 278
                + ++ ++ ++I     + +L   R L  +         +NV+  T ++    K  
Sbjct: 296 QLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL--TALMVALTKCK 353

Query: 279 DMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
           ++  A SLF      + VV+W+A+ISGY QNG  D+AV +FS M  + V+P+ F   +++
Sbjct: 354 EIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAH------VIAALVDMNAKCGNMDRAAELFET 391
           +    V           ++S  H ++ + +      V  AL+D   K GN+  A ++FE 
Sbjct: 414 TVQHAV-----------FISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFEL 462

Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVED 450
           +  +DV+++ +M+ G +  G   +A  +F ++  EG+ P+E  F  ++ AC+     VE 
Sbjct: 463 IETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQ 522

Query: 451 GWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           G +F     + YAI     +  C    +V L  + G+++SA+E+      E    +W ++
Sbjct: 523 GKQF-----HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSM 576

Query: 507 LGA 509
           +  
Sbjct: 577 ISG 579



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 201/421 (47%), Gaps = 30/421 (7%)

Query: 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR 164
           N LL  YS+  +  E   +FV L R    PD YT   V+  C+   +   G  +H   ++
Sbjct: 71  NQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVK 130

Query: 165 WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA------SVGDL 218
            G+   + VG SL+D+Y K   +   R+VFDEM +R+VVSW +++ GY+       V +L
Sbjct: 131 CGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWEL 190

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVSYTTMID 272
                V    P+   VS   +I  L   G +    Q+   +       ER V +  ++I 
Sbjct: 191 FCLMQVEGYRPDYYTVS--TVIAALANQGAVAIGMQIHALVVKLGFETERLVCN--SLIS 246

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
             +K G +  AR +F+   ++D V+W+++I+G+  NGQ  EA + F++M     +P    
Sbjct: 247 MLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHAT 306

Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
             S++ +C+ +  L L   +     +S +  ++ +V+ AL+    KC  +D A  LF  M
Sbjct: 307 FASVIKSCASLKELGLVRVLHCKTLKSGLSTNQ-NVLTALMVALTKCKEIDDAFSLFSLM 365

Query: 393 PN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
              + VVS+ +MI G   +G   QAV+LF  M  EG+ P+   ++ +LT    V + E  
Sbjct: 366 HGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEI- 424

Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA---YELLNSMPVEPHASAWGALLG 508
               E ++  Y    S      ++D   + G++  A   +EL+ +  V     AW A+L 
Sbjct: 425 --HAEVIKTNYE--KSSSVGTALLDAFVKIGNISDAVKVFELIETKDV----IAWSAMLA 476

Query: 509 A 509
            
Sbjct: 477 G 477



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 27/298 (9%)

Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
           A+ LF+  P RD+   + L+  Y++  Q  EA+ +F  +    + PD + +  ++S C+ 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
             N  +   V     +  + +    V  +LVDM  K GN+     +F+ M +RDVVS+ S
Sbjct: 115 SFNGTVGEQVHCQCVKCGL-VHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
           ++ G S +    Q   LF  M  EG  PD    + V+ A ++ G V  G      MQ ++
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIG------MQ-IH 226

Query: 463 AIVPS----PEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
           A+V       E   C  ++ +L ++G L+ A  + ++M  +   S    + G      D+
Sbjct: 227 ALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDL 286

Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           E  E   N       Q AG+       +AT    +  C   + +KE GL ++  C +L
Sbjct: 287 EAFETFNNM------QLAGA----KPTHATFASVIKSC---ASLKELGLVRVLHCKTL 331


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 279/489 (57%), Gaps = 44/489 (8%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+ + + ++  +NT++ G++ N R      +F+R+ +E   P +YT   V+ AC+ +L 
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +R G  IH  +I   +  +VFV  +L DLY +  EI  AR++FD M  RNVV+W  MI G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 212 Y------ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
           Y          DL     V +L P++  V+ ++++G  ++ G +  AR++F E+ E++ V
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQ--VTASSVLGAYIQAGYIDEARKVFGEIREKDEV 288

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
            +T M                               I G AQNG+ ++A+ +FS+M  +N
Sbjct: 289 CWTIM-------------------------------IVGCAQNGKEEDALLLFSEMLLEN 317

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWV--DSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
            +PD + + S++S+C+++ +L     V   ++L   + DL    V +ALVDM  KCG   
Sbjct: 318 ARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLL---VSSALVDMYCKCGVTR 374

Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
            A  +F TM  R+VVS+ SMI G +++G   +A+SL++ ML E L PD V F  VL+AC 
Sbjct: 375 DAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACV 434

Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
           H GLVE+G  +F +M + + + P+P+HYACMV+L GR+GH+  A +L++SM  EP++  W
Sbjct: 435 HAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIW 494

Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
             +L  C +  DI+ GE+ A  L EL P NA  Y++LSN+YA   RW DV  +RS MK +
Sbjct: 495 TTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSK 554

Query: 564 GLRKIPGCS 572
            ++K    S
Sbjct: 555 HVKKFSAYS 563



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 150/294 (51%), Gaps = 9/294 (3%)

Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
           N L+    K G++  AR+LFDEM +R+  S+  M+  YAK G +   R +F+  P RD V
Sbjct: 62  NRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSV 121

Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
           +++ +ISG+A NG+   A+ +F  M  + ++P E+  VS+++AC+Q+ +L     +   +
Sbjct: 122 SYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRI 181

Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
              ++      V  AL D+ A+CG +D+A  LF+ M  R+VV++  MI G   +    + 
Sbjct: 182 IICNLG-GNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKC 240

Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
           + LF  M    L PD+V  + VL A    G +++  + F  ++    +      +  M+ 
Sbjct: 241 IDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVC-----WTIMIV 295

Query: 477 LLGRTGHLKSAYELLNSMPVE---PHASAWGALLGACKLYSDIELGELVANRLF 527
              + G  + A  L + M +E   P      +++ +C   + +  G++V  + F
Sbjct: 296 GCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAF 349


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 211/652 (32%), Positives = 313/652 (48%), Gaps = 122/652 (18%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAV 92
           LLSAL      KL      +H  I   G + +     SL+  + S CH  A+    +  V
Sbjct: 6   LLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFS-CHDYAS----AELV 60

Query: 93  FNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           F     P +  LWN LL  Y+ N RF+E   +F +L     V PD YT+P+V+KAC  + 
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK---------------RKEISC------ 189
            V  G  IH  +++ G+  DVFVG+SL+++Y K               ++++ C      
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 190 ----------ARKVFDEMPER----NVVSWT----------------------------- 206
                     A K FD+M E     N V++T                             
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 207 ------AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF---- 256
                 A++  Y   G L  AK VF+ +P ++ ++WNA+I G    GD RS  +L     
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN 300

Query: 257 DEMPERNVVSYTT-----------------------------------MIDGYAKVGDMT 281
           DE  +  +++ T+                                   +ID Y K G ++
Sbjct: 301 DEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVS 360

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
           SA ++F      +VV+W+ +ISG+   G   +A+ I+ +M   +V+PD     S +SACS
Sbjct: 361 SAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACS 420

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
           Q+  LD    +  Y   +H   +   V+ AL+DM AKCG++D A +LF  +P RD+VS+ 
Sbjct: 421 QLAALDKGREL-HYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWT 479

Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
           SMI     HG   +A+ LFD M    +  D V F  VL+ACSH GLV++G+ +F  M   
Sbjct: 480 SMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQ 539

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLN-SMPVEPHASAWGALLGACKLYSDIELGE 520
           Y I P  EHY+C++DLLGR G L  AYE+L  S            L  AC L+++  LG 
Sbjct: 540 YDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGI 599

Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            +   L E++P +  +Y+LLSN+YA+ ++W +V  VR KMKE GL+K PGCS
Sbjct: 600 QIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCS 651



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 159/320 (49%), Gaps = 13/320 (4%)

Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
           D  T    ++ C+    +++G  IH  +   G   ++ +  SLI  Y    + + A  VF
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 195 --DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV-----SWNALIGGLVKIG 247
             ++ P  +V  W A++  Y +    VEA  +FD +   S V     ++  ++     +G
Sbjct: 62  QTNDCP-LDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 248 DLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
            +   R++ + + +     +V   +++++ YAK      A  LF+  P RDV  W+A+IS
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
            Y ++G+ + A+K F  M     +P+      ++S+C+++ NL+    V   L    + L
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
             A V++ALVDM  KCG ++ A E+FE +P ++ +++ +MI G S+ G  R  + L  RM
Sbjct: 241 D-AFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 424 LSEGLTPDEVAFTIVLTACS 443
             EG  P  +  T ++ A S
Sbjct: 300 NDEGTKPTLMTLTSIIYASS 319


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/530 (32%), Positives = 295/530 (55%), Gaps = 15/530 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           ++H  ++K G   D  ++ + + + ++    L  +  VF+RI + N   W ++L G  QN
Sbjct: 149 RLHCDVVKAG-GGDLFVMNNLVDM-YAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQN 206

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
               E   +F  + +E  +P +YT   V+ AC+ + S+ +G  IH +V++ G+  + F+ 
Sbjct: 207 GLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFIT 266

Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF------DLM 228
            +++D+Y K  E   AR+VFDE+   ++V WT MIVGY   G  ++A  +F       ++
Sbjct: 267 AAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIV 326

Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSAR 284
           P  ++V+   ++    ++ +L   R +     +     N V    ++D YAK   ++ A+
Sbjct: 327 P--NSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAK 384

Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            +F    ++DVV W++LI+GYA+N    +A+ +FS M  +   PD   +V+ +SAC  +G
Sbjct: 385 GIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLG 444

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           +L +     +Y  + H  +S  +V  AL+++  KC ++  A  +F  M +R+ V++ +MI
Sbjct: 445 DLLIGKCFHTYAVK-HAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMI 503

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G  + G    ++ LF+ ML + + P+E  FT +L+ CSH G+V  G + FE+M + + I
Sbjct: 504 GGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNI 563

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            PS +HYACMVD+L R G+L+ A E +  MP++   S W A L  CKL+S +E  E   N
Sbjct: 564 TPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVN 623

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           R+  L P      V++SN+Y +  RW     +R  MKERGL K+PGCSS+
Sbjct: 624 RMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSV 673



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 153/346 (44%), Gaps = 79/346 (22%)

Query: 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201
           ++ AC+ + S+R   A+HA ++  G+   +   T L+  Y    +++ AR+V DE P  +
Sbjct: 34  LLPACTTLPSLR---ALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPD 90

Query: 202 VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-------------------------- 235
             ++   +  +A+ G   EA  V   M  R                              
Sbjct: 91  AYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRL 150

Query: 236 --------------WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
                          N L+    K GDL++AR++FD +P+RNVVS               
Sbjct: 151 HCDVVKAGGGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVS--------------- 195

Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
                           W++++SG  QNG   E + +F++M  +++ P E+ + S++ AC+
Sbjct: 196 ----------------WTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACT 239

Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
            +G+L     +   + + H  +S   + AA++DM  KCG  + A ++F+ +   D+V + 
Sbjct: 240 MLGSLHQGRLIHGSVMK-HGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWT 298

Query: 402 SMIKGLSIHGHGRQAVSLF--DRMLSEGLTPDEVAFTIVLTACSHV 445
           +MI G + +G    A+ LF  D+ +   + P+ V    VL+A + +
Sbjct: 299 TMIVGYTQNGSPLDALLLFVDDKFMR--IVPNSVTIATVLSASAQL 342



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
           R + ++T ++  YA +GD+ SAR + +  P  D   +   +  +A  G+  EAV +  DM
Sbjct: 58  RGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDM 117

Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA-----HVIAALVDMN 376
             +     E ++V  ++  + V + D       Y  R H D+ +A      V+  LVDM 
Sbjct: 118 RRRCPAEQEDVVVLSLALKAAVRSADF-----GYGRRLHCDVVKAGGGDLFVMNNLVDMY 172

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
           AK G++  A ++F+ +P+R+VVS+ SM+ G   +G  ++ + LF+ M  E + P E    
Sbjct: 173 AKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMA 232

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
            VL AC+ +G +  G R        + +V +    A M+D+  + G  + A ++ + +
Sbjct: 233 SVLMACTMLGSLHQG-RLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDEL 289


>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
          Length = 595

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 263/465 (56%), Gaps = 54/465 (11%)

Query: 128 IREEAVP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--- 183
           +R + VP + +TF  +++AC+ +   R    +H  ++R G   DVFV  +L+D+Y +   
Sbjct: 1   MRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGG 60

Query: 184 --RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA--- 238
                +  AR+VFDEM +R+VVSW +++  Y S GD   A   F+ MPER+ VSWN    
Sbjct: 61  GGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVA 120

Query: 239 --------LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290
                   +I G    GD+ +AR +FD M +++VVS+T M+  YAK+GD+ +   LF+  
Sbjct: 121 GNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHM 180

Query: 291 PDRDVVAWSALISGYAQNGQPDEAVKIFS-DMCSKNVQPDEFILVSLMSACSQVGNLDLS 349
           P +++V+W+A+I+GY  N + DEA++ F   M     +PDE  LVS++SAC+Q+G+++  
Sbjct: 181 PVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYC 240

Query: 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
           NW+ S++ +S++ L+ A +  AL+DM AKCG++ RA  +F  M  R ++++ +MI G + 
Sbjct: 241 NWISSFIGKSNIHLTVA-LGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAF 299

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           +G  R A+ +++ M  EG+  D+  F   L AC+H GL+++GW  F  M   Y I P  E
Sbjct: 300 NGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRME 359

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           HY CMVDLLGR                                    EL E V+ ++ EL
Sbjct: 360 HYGCMVDLLGRA-----------------------------------ELIEYVSKKITEL 384

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           EP N+   VL+SN  A   RW  V   R+ M+  G+ K+PG SS+
Sbjct: 385 EPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSI 429



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVL 150
           +F+ +   N   WN ++ GY+ NSR+ E    F  ++ E    PD+ T   V+ AC+ + 
Sbjct: 176 LFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLG 235

Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
           SV     I + + +  +   V +G +LID++ K  ++  A  +F +M  R +++WT MI 
Sbjct: 236 SVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMIS 295

Query: 211 GYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVS 266
           G+A  G   +A  V++ M        +  + A +      G L+    +F+EM ER  + 
Sbjct: 296 GFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQ 355

Query: 267 -----YTTMID 272
                Y  M+D
Sbjct: 356 PRMEHYGCMVD 366


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/421 (38%), Positives = 250/421 (59%), Gaps = 31/421 (7%)

Query: 155 GTAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
           G ++HA  +R G    D+FV T+L+++Y K                              
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAK-----------------------------T 96

Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273
           + G++  A+  FD  P R     N ++   V  G++  AR++FD M  R++VS+ TMI G
Sbjct: 97  AAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHG 156

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           YA  GD+  AR +F+   DRD  +WS++IS YA+     EA++++ +M    V PD   +
Sbjct: 157 YAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISM 216

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
           VS++SACS +G L +   V  ++  + +++    +  ALVDM AKCG+++ + ++F  MP
Sbjct: 217 VSVLSACSAMGALAIGAEVHRFVESNRVEVD-MKLGTALVDMYAKCGDIENSLKVFHAMP 275

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
            +DV+++ SMI GL+ HG G  A+SLF  M+S+GL P+E+ F  VL AC+HVGLV DG +
Sbjct: 276 VKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKK 335

Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
           +F +M +V+ +VP  EHY CMVDLLGR GH++ A EL+ SM  +P    W  LLGAC+++
Sbjct: 336 YFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIH 395

Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573
            ++E+ E    +L  L+P   G YVLLSNIYA A+ W  V  +R  ++   ++++PG SS
Sbjct: 396 KNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSS 455

Query: 574 L 574
           +
Sbjct: 456 I 456



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 109/223 (48%), Gaps = 10/223 (4%)

Query: 92  VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
           +F+   + + F W++++  Y++     E   ++  +      PD  +   V+ ACS + +
Sbjct: 169 IFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGA 228

Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
           +  G  +H  V    V+ D+ +GT+L+D+Y K  +I  + KVF  MP ++V++W++MI+G
Sbjct: 229 LAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIG 288

Query: 212 YASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV-- 265
            A+ G   +A ++F  M  +    + +++  ++     +G +   ++ F  M + + V  
Sbjct: 289 LANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVP 348

Query: 266 ---SYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISG 304
               Y  M+D   + G +  A  L  +   + D + W  L+  
Sbjct: 349 RMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGA 391



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 16  CSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLH---QVHSHIIKKGLEQDHSLV 72
           CS       R   +    P C+ S ++++  C     L    +VH  +    +E D  L 
Sbjct: 193 CSKEALELWREMRVAGVAPDCI-SMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLG 251

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132
              + + ++    +  S  VF+ +   +   W++++ G + +    +  ++F  +I +  
Sbjct: 252 TALVDM-YAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGL 310

Query: 133 VPDKYTFPLVIKACSHVLSVREG 155
            P++ TF  V+ AC+HV  V +G
Sbjct: 311 QPNEITFIGVLIACTHVGLVNDG 333


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 269/453 (59%), Gaps = 11/453 (2%)

Query: 129 REEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI-RWGVDEDVFVGTSLIDLYGKRKEI 187
           R   VPD   +  ++K C+ +  V +G  +HA ++    +D  + +   ++++Y K   +
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGL 243
             AR++FDEMP +++V+WTA+I G++      +A  +F  M     + ++ + ++L+   
Sbjct: 140 DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKAS 199

Query: 244 VKIGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
                L    QL         + +V   + ++D YA+ G M +A+  F+  P +  V+W+
Sbjct: 200 GSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWN 259

Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           ALISG+A+ G+ + A+ +   M  KN QP  F   S++SAC+ +G L+   WV +++ +S
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKS 319

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
            + L  A +   L+DM AK G++D A  +F+ +   DVVS+ +M+ G + HG G++ +  
Sbjct: 320 GLKLI-AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
           F++ML  G+ P+E++F  VLTACSH GL+++G  +FE M+  Y + P   HY   VDLLG
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLG 437

Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539
           R G L  A   +  MP+EP A+ WGALLGAC+++ ++ELG   A R FEL+P ++G  +L
Sbjct: 438 RVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRML 497

Query: 540 LSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           LSNIYA+A RW DV  VR  MKE G++K P CS
Sbjct: 498 LSNIYASAGRWRDVAKVRKMMKESGVKKQPACS 530



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 183/362 (50%), Gaps = 12/362 (3%)

Query: 43  LIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
           L+K+C     + Q   VH+H++      +H ++ + I   ++    L  +  +F+ +   
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
           +   W  L+ G+SQN+R  +   +F +++R    P+ +T   ++KA      +  GT +H
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
           A  +++G    V+VG++L+D+Y +   +  A+  FD MP ++ VSW A+I G+A  G+  
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPER--NVVSY--TTMI 271
            A  +   M  +    ++ ++++++     IG L   + +   M +    ++++   T++
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLL 332

Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
           D YAK G +  A+ +F+     DVV+W+ +++G AQ+G   E +  F  M    ++P+E 
Sbjct: 333 DMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEI 392

Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
             + +++ACS  G LD   +    + +  ++    H +   VD+  + G +DRA      
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV-TFVDLLGRVGLLDRAERFIRE 451

Query: 392 MP 393
           MP
Sbjct: 452 MP 453


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 268/480 (55%), Gaps = 48/480 (10%)

Query: 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP 198
           F  ++K C +++ +++   IHA ++++ + +  F+ T ++D+     E   A  +F  + 
Sbjct: 17  FVPILKNCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVA 73

Query: 199 ERNVVSWTAMIVGYASVGDLVEAKTVFDLM------------------------------ 228
           + N   + AMI  Y      V A TV+  M                              
Sbjct: 74  DPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCY 133

Query: 229 -------------PERSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
                         ++SN V  N+L+   VK   L  A ++F+EM ER+ VS+ T+I G+
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGH 193

Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
            ++G M  AR++FE   D+ + +W+A++SGYA+ G   +A++ F  M    ++PDE  LV
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253

Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
           S++ AC+Q+G L+L  W+  Y  ++   L    V  AL++M AKCG++D    LF+ M  
Sbjct: 254 SVLPACAQLGALELGKWIHFYADKAGF-LRNICVCNALIEMYAKCGSIDEGRRLFDQMNE 312

Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
           RDV+S+ +MI GL+ HG   +A+ LF  M    + P+ + F  +L+AC+H GL+ +G R+
Sbjct: 313 RDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRY 372

Query: 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYS 514
           FE+M+  Y I P  EHY C+V+LLG +G L  A EL+  MP++P ++ WG+LL +C+ +S
Sbjct: 373 FESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHS 432

Query: 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
           ++E+  +    L ELEP + G+YVLLSN+YA   +W  V  +R  M+ + ++K PGCSS+
Sbjct: 433 NLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 213/443 (48%), Gaps = 48/443 (10%)

Query: 43  LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
           ++K C     L ++H+HI+K  L Q   LV   + +C+  A    Y+  +F R+ +PN F
Sbjct: 20  ILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAET-EYANLLFKRVADPNAF 78

Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLI-----REEAVPDKYTFPLVIKACSHVLSVREGTA 157
           L+N +++ Y  N  ++   T++ +++          PDK+TFP V+K+C+ ++    G  
Sbjct: 79  LYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 138

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +H  V ++G   +  V  SL+++Y K   +  A KVF+EM ER+ VSW  +I G+  +G 
Sbjct: 139 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQ 198

Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM------PE---------- 261
           +  A+ +F+ M +++  SW A++ G  +IG    A + F  M      P+          
Sbjct: 199 MRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPA 258

Query: 262 -----------------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
                                  RN+     +I+ YAK G +   R LF+   +RDV++W
Sbjct: 259 CAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISW 318

Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
           S +I G A +G+  EA+++F +M    ++P+    V L+SAC+  G L+        + R
Sbjct: 319 STMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKR 378

Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGHGRQAV 417
            +           LV++    G +D+A EL + MP + D   + S++     H +   AV
Sbjct: 379 DYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAV 438

Query: 418 SLFDRMLSEGLTPDEVAFTIVLT 440
              + +L   L P +    ++L+
Sbjct: 439 IAMEHLLE--LEPADTGNYVLLS 459



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 142/317 (44%), Gaps = 42/317 (13%)

Query: 39  SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
           S + +  KC      H+V   + ++     ++L++  + L       +  + A+F  + +
Sbjct: 157 SLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRL-----GQMRRARAIFEEMQD 211

Query: 99  PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
              F W  ++ GY++   + +    F R+      PD+ +   V+ AC+ + ++  G  I
Sbjct: 212 KTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWI 271

Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
           H    + G   ++ V  +LI++Y K   I   R++FD+M ER+V+SW+ MIVG A+ G  
Sbjct: 272 HFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRA 331

Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
            EA  +F  M +              KI              E N++++  ++   A  G
Sbjct: 332 HEAIELFQEMQK-------------AKI--------------EPNIITFVGLLSACAHAG 364

Query: 279 DMTSARSLFEAAPDRD------VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
            +      FE+   RD      V  +  L++    +G+ D+A+++   M  K   PD  I
Sbjct: 365 LLNEGLRYFESMK-RDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMK---PDSAI 420

Query: 333 LVSLMSACSQVGNLDLS 349
             SL+S+C    NL+++
Sbjct: 421 WGSLLSSCRSHSNLEIA 437


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 305/575 (53%), Gaps = 25/575 (4%)

Query: 14  KSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLE--QDHSL 71
           K  S M+    + +P++F       S+L   K   +      VH  ++K G E   D  +
Sbjct: 196 KQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANV------VHGMLVKLGSEYVNDLYV 249

Query: 72  VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-E 130
           V+  I +   L   L ++  VF+  +  NT +WNT++  + QN+  +E   +F + +  E
Sbjct: 250 VSSAIFMYAELGC-LEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESE 308

Query: 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190
           +A  D+ T    I A SH+        +HA VI+      V V  +LI +Y +   I  +
Sbjct: 309 DAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTS 368

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKI 246
            K+FD MPE++VVSW  MI  +   G   EA  +F  M ++     +V+  AL+     +
Sbjct: 369 FKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDL 428

Query: 247 GDLRSARQLFDEMPERNVVSYTTM----IDGYAKVGDMTSARSLFEAA--PDRDVVAWSA 300
            +    +Q    +  RN + +  M    ID YAK G + +A+++FE +   +RD   W++
Sbjct: 429 RNPDIGKQTHGYLL-RNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNS 487

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           ++SGY QNG  D+A  I   M  + V P+   L S++ AC+  G +D    +  +  R+ 
Sbjct: 488 MMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRND 547

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
           +D     V  AL+DM +K G++  A  +F     + +V+Y +MI G   HG G  A+ +F
Sbjct: 548 LD-QNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMF 606

Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480
            RM   G+ PD V    VL+ACS+ GLV++G + FE+M+ VY I PS EH+ C+ D+LGR
Sbjct: 607 HRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGR 666

Query: 481 TGHLKSAYELLNSMPVEPHA-SAWGALLGACKLYSDIELGELVANRLFELEPQNA--GSY 537
            G +  AYE +  +  + +    WG+LL AC+++   ELG+LVA +L E+E  N   G +
Sbjct: 667 AGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYH 726

Query: 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           VLLSNIYA    W +V +VR +M+ERGL+K  G S
Sbjct: 727 VLLSNIYAEERNWENVDIVRKQMRERGLKKETGSS 761



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 229/495 (46%), Gaps = 61/495 (12%)

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE--EAVPDKYTFPLVI 143
           L  +  +F+ +  P+T LWNT++ G   N+   E    +  +     +   D YT+  V+
Sbjct: 44  LHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVL 103

Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY---------GKR----KEISCA 190
           KAC+   ++  G A+HA  +R  ++    V  SL+++Y         GK           
Sbjct: 104 KACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLV 163

Query: 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKI 246
           RKVFD M +R VV+W  +I  Y       EA   F +M     + S VS+  +      +
Sbjct: 164 RKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSL 223

Query: 247 GDLRSARQLFDEMPE------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
           GD ++A  +   + +       ++   ++ I  YA++G +  A+ +F+   +R+   W+ 
Sbjct: 224 GDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNT 283

Query: 301 LISGYAQNGQPDEAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
           +IS + QN    E +++F     S++   DE  L+S +SA S +   +L+  + +++ + 
Sbjct: 284 MISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK- 342

Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
           ++ +++  V+ AL+ M ++C ++D + ++F+ MP +DVVS+ +MI     +G   +A+ L
Sbjct: 343 NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALML 402

Query: 420 FDRMLSEGLTPDEVAFTIVLTACS-----------HVGLVEDGWRF-------------- 454
           F  M  + L  D V  T +L+A S           H  L+ +G +F              
Sbjct: 403 FYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKS 462

Query: 455 --FEAMQNVYAIVPSPEH----YACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGA 505
              EA QNV+    S E     +  M+    + G +  A+ +L  M    V P+     +
Sbjct: 463 GLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLAS 522

Query: 506 LLGACKLYSDIELGE 520
           +L AC     I+ G+
Sbjct: 523 ILPACNPSGYIDWGK 537



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM--CSKNVQPDEFILVS 335
           G +  AR LF+A P    V W+ +I G   N  PDEA+  +S+M   S  V+ D +   S
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC------GNM------- 382
           ++ AC+   NL +   V ++  R  M+ SR  V  +L++M + C      G M       
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRI-VYNSLLNMYSMCSSTTPDGKMVSGYSRC 160

Query: 383 DRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
           D   ++F+TM  R VV++ ++I          +AV  F  M+  G+ P  V+F  V  A 
Sbjct: 161 DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 220

Query: 443 SHVG 446
           S +G
Sbjct: 221 SSLG 224


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 167/528 (31%), Positives = 293/528 (55%), Gaps = 12/528 (2%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+H++K      H +  + +   ++ +  +  +  VF+R+   +   W +++ G+SQ 
Sbjct: 185 QLHAHVLKSEFGA-HIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 243

Query: 115 SRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173
              +E    F  ++ +   +P+++ F  V  ACS +L    G  +H   I++G+  DVF 
Sbjct: 244 GYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFA 303

Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS- 232
           G SL D+Y K   +SCAR VF ++   ++V+W A+I G+A  GD  EA   F  M  +  
Sbjct: 304 GCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGL 363

Query: 233 ---NVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARS 285
               ++  +L+       +L    Q+   + +     +V    T++  YAK  ++  A  
Sbjct: 364 IPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIF 423

Query: 286 LFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
            FE    + D+V+W+A+++   ++ Q +E  ++   MC    +PD   L +++ A ++  
Sbjct: 424 FFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETV 483

Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
           ++++ N V  Y  ++ ++   + V   L+D+ AKCG++  A ++F++M N DVVS+ S+I
Sbjct: 484 SIEIGNQVHCYALKTGLNCDTS-VTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLI 542

Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
            G +  G+G +A+ LF  M    + P+ V F  VLTACSHVGLVE+GW+ +  M+  + I
Sbjct: 543 LGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGI 602

Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
            P+ EH +CMVDLL R G L  A   ++ M  +P    W  LL ACK + ++++G+  A 
Sbjct: 603 APTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAE 662

Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            + +++P N+ ++VLL NIYA+   W DV  +RS MK+RG+RK+PG S
Sbjct: 663 NILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQS 710



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/513 (27%), Positives = 242/513 (47%), Gaps = 27/513 (5%)

Query: 37  LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
           L+SA + ++  +   H  ++H H++K     D +L  H +++ +     L  +  VF+ +
Sbjct: 69  LISACSYLRSLE---HGKKIHDHMLKSKSHPDLTLQNHILNM-YGKCKSLKDAQKVFDAM 124

Query: 97  VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
              N   W +++ GYSQN +       + ++++   +PD++TF  +IKACS +  +  G 
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 184

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
            +HA V++      +    +LI +Y K   I  A  VF  M  R+++SW +MI G++ +G
Sbjct: 185 QLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLG 244

Query: 217 DLVEAKTVFDLMPERSNVSWNALIGGLV-----KIGDLRSARQLFDEMPE----RNVVSY 267
             +EA   F  M  +     N  I G V      +      RQL     +    R+V + 
Sbjct: 245 YELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAG 304

Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
            ++ D YAK G ++ AR +F      D+VAW+A+I+G+A  G   EA+  FS M  + + 
Sbjct: 305 CSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLI 364

Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
           PDE  + SL+ AC+    L     V  Y+++  +DL    V   L+ M AKC  +  A  
Sbjct: 365 PDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLD-VPVCNTLLTMYAKCSELRDAIF 423

Query: 388 LFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
            FE M  N D+VS+ +++     H    +   L   M      PD +  T VL A +   
Sbjct: 424 FFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETV 483

Query: 447 LVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
            +E G +      + YA+             ++DL  + G LK+A+++ +SM + P   +
Sbjct: 484 SIEIGNQV-----HCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM-INPDVVS 537

Query: 503 WGAL-LGACKL-YSDIELGELVANRLFELEPQN 533
           W +L LG  +  Y +  L      R  +++P +
Sbjct: 538 WSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 570



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 208/422 (49%), Gaps = 27/422 (6%)

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
           T+  +I ACS++ S+  G  IH  +++     D+ +   ++++YGK K +  A+KVFD M
Sbjct: 65  TYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAM 124

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRS 251
           PERNVVSWT++I GY+  G    A   +       +MP++   ++ ++I     +GD+  
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQ--FTFGSIIKACSSLGDIGL 182

Query: 252 ARQLFDEMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
            RQL   + +     ++++   +I  Y K   +  A  +F     RD+++W ++I+G++Q
Sbjct: 183 GRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQ 242

Query: 308 NGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR- 365
            G   EA+  F +M  + V  P+EFI  S+ SACS +   +    +     +    L R 
Sbjct: 243 LGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIK--FGLGRD 300

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
                +L DM AKCG +  A  +F  +   D+V++ ++I G +  G  ++A++ F +M  
Sbjct: 301 VFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH 360

Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGH 483
           +GL PDE+    +L AC+    +  G +    +  +   +  P    C  ++ +  +   
Sbjct: 361 QGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVP---VCNTLLTMYAKCSE 417

Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE--PQNAGSYVLLS 541
           L+ A      M       +W A+L AC  +   E  E+   RL +L    Q+   Y+ L+
Sbjct: 418 LRDAIFFFEEMRCNADLVSWNAILTACMRHDQAE--EVF--RLLKLMCISQHRPDYITLT 473

Query: 542 NI 543
           N+
Sbjct: 474 NV 475


>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 262/463 (56%), Gaps = 24/463 (5%)

Query: 134 PDKYT-FPLVIKACSHVLSVREGT------------------AIHAAVIRWGVD---EDV 171
           P+++T +PL   +  H L+VR G                     HA+  R   D    D 
Sbjct: 108 PNRHTIYPLPAASSLHALAVRSGHLPADLRLANSLLARYLAHGSHASARRLFADVPRPDA 167

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER 231
               +L+    +   +  AR +FD+MP R++VS+ +M+ G+A+ GD+  A+ +FD MPER
Sbjct: 168 VTWNTLLRACLRSGLLPSARHLFDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGMPER 227

Query: 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
             VSWN+++ G  + GD+  AR++FD MPER+VVS+ +M+DGYA+ GD+ +AR++F+  P
Sbjct: 228 DVVSWNSMLAGHTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMP 287

Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLMSACSQVGNLDLSN 350
            R  V+W+ +++ YA+     E +++F  M +     P+E   VS+++AC  +G+L+   
Sbjct: 288 RRSTVSWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGK 347

Query: 351 WV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI 409
            V D    R    +    ++ AL+ M AKCG M+ A  +F++M  R V S+ SMI G  +
Sbjct: 348 RVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGL 407

Query: 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469
           HG   +A+ LF  M   G  P+E  F  VL++C+H GLV +GW  F+ M  +Y + P  E
Sbjct: 408 HGQSEKALELFLEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAE 467

Query: 470 HYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529
           H+ CM+DLLGR G L  +  L+ ++  +   + WGA++ A +  +   LGE V  +L E+
Sbjct: 468 HFGCMMDLLGRAGLLTDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKLIEM 527

Query: 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
            P+  G YVLLSNIYA   RW DV  VR  MK  G  K  G S
Sbjct: 528 RPKEVGPYVLLSNIYAGEGRWNDVEKVREMMKGNGAEKDVGLS 570



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 49/303 (16%)

Query: 80  HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-------- 131
           H+    +  +  +F+ +   +   WN++L GY+Q    +    +F  + R          
Sbjct: 239 HTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVL 298

Query: 132 ------------------------AVPDKYTFPLVIKACSHVLSVREGTAIHAAV-IRW- 165
                                   AVP++ TF  V+ AC  +  +  G  +H  V  RW 
Sbjct: 299 ALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWE 358

Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
            +  DV + T+L+ +Y K   +  AR +FD M ER+V SW +MI+GY   G   +A  +F
Sbjct: 359 TLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELF 418

Query: 226 DLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEM-----PERNVVSYTTMIDGYAK 276
             M    P  +  ++  ++      G +      FD M      E     +  M+D   +
Sbjct: 419 LEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLGR 478

Query: 277 VGDMTSARSLFEAAPDRDVVA-WSALISG-YAQNGQ--PDEAVKIFSDMCSKNVQPDEFI 332
            G +T + +L +   ++   A W A++S   AQNG    +   K   +M  K V P  ++
Sbjct: 479 AGLLTDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKLIEMRPKEVGP--YV 536

Query: 333 LVS 335
           L+S
Sbjct: 537 LLS 539


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/426 (38%), Positives = 258/426 (60%), Gaps = 13/426 (3%)

Query: 158 IHAAVIRWGVD-EDVFVGTSLI-DLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
           IHA  IR GV   +  +G  LI  L      +S A ++F ++   N+ +W  MI GYA  
Sbjct: 59  IHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAES 118

Query: 216 GDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN-----VVS 266
            + + A  ++  M     E    ++  L+  + K+ D+R   ++   +  RN     V  
Sbjct: 119 ENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKV-HSIAIRNGFESLVFV 177

Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
             T++  YA  G   SA  LFE   +R++V W+++I+GYA NG+P+EA+ +F +M  + V
Sbjct: 178 QNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGV 237

Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
           +PD F +VSL+SAC+++G L L      Y+ +  +D    H   AL+D+ AKCG++ +A 
Sbjct: 238 EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD-GNLHAGNALLDLYAKCGSIRQAH 296

Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
           ++F+ M  + VVS+ S+I GL+++G G++A+ LF  +  +GL P E+ F  VL ACSH G
Sbjct: 297 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 356

Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
           +V++G+ +F+ M+  Y IVP  EHY CMVDLLGR G +K A+E + +MP++P+A  W  L
Sbjct: 357 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 416

Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
           LGAC ++  + LGE+   +L +LEP+++G YVLLSN+YA+  RW DV  VR  M   G++
Sbjct: 417 LGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 476

Query: 567 KIPGCS 572
           K PG S
Sbjct: 477 KTPGHS 482



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 212/420 (50%), Gaps = 24/420 (5%)

Query: 8   NTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKC-KLQTHLHQVHSHIIKKGL- 65
           ++P KH S +     C  S     PK   L   + L+  C   +    Q+H+  I+ G+ 
Sbjct: 15  HSPRKHFSFTISTSTCPES-----PKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVP 69

Query: 66  ----EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF 121
               +    L+   +S C    +P+SY+  +F++I NPN F WNT+++GY+++   +   
Sbjct: 70  LTNPDMGKYLIFTLLSFC----SPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPAL 125

Query: 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLY 181
            ++ ++      PD +T+P ++KA + ++ VREG  +H+  IR G +  VFV  +L+ +Y
Sbjct: 126 ELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMY 185

Query: 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWN 237
                   A K+F+ M ERN+V+W ++I GYA  G   EA T+F  M  R       +  
Sbjct: 186 AACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMV 245

Query: 238 ALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
           +L+    ++G L   R+    M     + N+ +   ++D YAK G +  A  +F+   ++
Sbjct: 246 SLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK 305

Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
            VV+W++LI G A NG   EA+++F ++  K + P E   V ++ ACS  G +D      
Sbjct: 306 SVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYF 365

Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
             +   +  + +      +VD+  + G + +A E  + MP + + V + +++   +IHGH
Sbjct: 366 KRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 290/502 (57%), Gaps = 35/502 (6%)

Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIHAAV 162
           WN+++  +SQN RF+E   +F+RL+  E V PD  TF  V+ ACSH+  +R G  IHA  
Sbjct: 184 WNSMISSFSQNERFMEAL-MFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA 242

Query: 163 IRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
           +R   V E+ FVG++L+D+Y    ++   R VFD + +R +  W AMI GYA      +A
Sbjct: 243 LRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302

Query: 222 KTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQLFDEMPERNVVS----YTTMID 272
             +F  M   + +  NA     ++   V+   +     +   + +R + +       +ID
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALID 362

Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC---------- 322
            Y+++GD+ +++ +F++  DRD+V+W+ +I+ Y   G+  +A+ +  +M           
Sbjct: 363 MYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDG 422

Query: 323 ----SKNV--QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
                K V  +P+   L++++  C+ +  L     + +Y  R+ +  S+  V +ALVDM 
Sbjct: 423 DYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLL-ASQVTVGSALVDMY 481

Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-----LTPD 431
           AKCG ++ A  +F+ MP R+V+++  +I    +HG G++++ LF+ M++EG     + P 
Sbjct: 482 AKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPT 541

Query: 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491
           EV F  +  +CSH G+V++G   F  M+N + I P+P+HYAC+VDL+GR G ++ AY L+
Sbjct: 542 EVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLV 601

Query: 492 NSMPVE-PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
           N+MP       AW +LLGAC++Y +IE+GE+ A  L +L+P  A  YVLLSNIY++A  W
Sbjct: 602 NTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLW 661

Query: 551 LDVCLVRSKMKERGLRKIPGCS 572
                +R +MK  G++K PGCS
Sbjct: 662 DKAMNLRRRMKAMGVKKEPGCS 683



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 179/386 (46%), Gaps = 38/386 (9%)

Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE--DVFVGTSLIDLYGKRKEISCAR 191
           PD + FP V+KA + +  +  G  IHA V ++G      V +  +L+++YGK   +  A 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-PERSNVSWNALIGGLVKIGDLR 250
           KVFD + ER+ VSW ++I       +   A   F LM  E    S   L+   +   +LR
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 251 SARQL----------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
               L          F +   R   S   ++  YAK+G +  A+SL     DRD+V W++
Sbjct: 128 KRDGLWLGKQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
           +IS ++QN +  EA+     M  + V+PD     S++ ACS +  L     + +Y  R+ 
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD 246

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420
             +  + V +ALVDM   CG ++    +F+++ +R +  + +MI G +   H  +A+ LF
Sbjct: 247 DVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLF 306

Query: 421 DRM-LSEGLTPDEVAFTIVLTA---CS--------HVGLVEDGWRFFEAMQNVYAIVPSP 468
             M  + GL  +    + ++ A   C         H  +++ G      +QN        
Sbjct: 307 IEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNA------- 359

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSM 494
                ++D+  R G +K++  + +SM
Sbjct: 360 -----LIDMYSRMGDIKTSKRIFDSM 380



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 181/394 (45%), Gaps = 44/394 (11%)

Query: 34  PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
           P+C  S L L++  K      ++H++ ++     ++S V   +   +     +     VF
Sbjct: 224 PAC--SHLDLLRTGK------EIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVF 275

Query: 94  NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY----TFPLVIKACSHV 149
           + +++    LWN ++ GY+Q+    +   +F+ +   EA    Y    T   ++ A    
Sbjct: 276 DSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEM---EAAAGLYSNATTMSSIVPAYVRC 332

Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
             +     IH  VI+ G++ + ++  +LID+Y +  +I  ++++FD M +R++VSW  +I
Sbjct: 333 EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTII 392

Query: 210 VGYASVG------------DLVEAKTVFD-------LMPERSN-VSWNALIGGLVKIGDL 249
             Y   G              +E K+ +D        +P + N ++   ++ G   +  L
Sbjct: 393 TSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSAL 452

Query: 250 RSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
              +++       +    V   + ++D YAK G +  AR +F+  P R+V+ W+ +I  Y
Sbjct: 453 AKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY 512

Query: 306 AQNGQPDEAVKIFSDMCSKN-----VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360
             +G+  E++++F DM ++      V+P E   ++L ++CS  G +D    +   +   H
Sbjct: 513 GMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEH 572

Query: 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
                    A +VD+  + G ++ A  L  TMP+
Sbjct: 573 GIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPS 606



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 114/508 (22%), Positives = 233/508 (45%), Gaps = 53/508 (10%)

Query: 27  APINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQ------DHSLVAHFISLCH 80
           +P NF  P+ +L A+  I++  L     Q+H+H+ K G         D++LV  +   C 
Sbjct: 7   SPDNFAFPA-VLKAVAGIQELYLGK---QIHAHVFKFGYGSFSSVTIDNTLVNMY-GKCG 61

Query: 81  SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
            L      +  VF+RI   +   WN+++    +   +      F  ++ E   P  +T  
Sbjct: 62  GLGD----AYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLV 117

Query: 141 LVIKACSHVLSVRE----GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
            +  ACS+ L  R+    G  IH    R G     F   +L+ +Y K   +  A+ +   
Sbjct: 118 SMALACSN-LRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVL 175

Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSA 252
             +R++V+W +MI  ++     +EA     LM     +   V++ +++     +  LR+ 
Sbjct: 176 FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235

Query: 253 RQLF------DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
           +++       D++ E + V  + ++D Y   G + S R +F++  DR +  W+A+I+GYA
Sbjct: 236 KEIHAYALRTDDVIENSFVG-SALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYA 294

Query: 307 QNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
           Q+   ++A+ +F +M  +  +  +   + S++ A  +   +     +  Y+ +  ++ +R
Sbjct: 295 QSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNR 354

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM-- 423
            ++  AL+DM ++ G++  +  +F++M +RD+VS+ ++I    I G    A+ L   M  
Sbjct: 355 -YLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQR 413

Query: 424 LSEGLT--------------PDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSP 468
           + E  T              P+ +    VL  C+ +  +  G      A++N+ A   + 
Sbjct: 414 IEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTV 473

Query: 469 EHYACMVDLLGRTGHLKSAYELLNSMPV 496
              + +VD+  + G L  A  + + MP+
Sbjct: 474 G--SALVDMYAKCGCLNLARRVFDQMPI 499


>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 801

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 294/549 (53%), Gaps = 24/549 (4%)

Query: 27  APINFPKPSCLLSALTL-IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP 85
           A   F   S     LTL +K CK  T +HQ H ++IK  L      ++  ++   +    
Sbjct: 2   ANTQFQAISNAFHKLTLALKSCKTITEIHQFHCYMIKTSLTNVPFTLSKLLA---ASIFD 58

Query: 86  LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
           ++Y++ +F  I NPN F++NT+L+GYS ++   +   IF +L       D ++F  V+KA
Sbjct: 59  MNYASTIFTCIQNPNLFMYNTMLRGYSVSNSSNKALPIFNKLRNSGNGLDPFSFIAVMKA 118

Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN-VVS 204
           C     V  G  +H  V++ G    V +  +++  Y     I  ARKVFDE PERN +VS
Sbjct: 119 CGRSFEVGFGRGVHGIVVKSGNRFFVDLNNTILQFYCVCGRIDDARKVFDECPERNDLVS 178

Query: 205 WTAMIVGYASVGDLVEAKTVFDLMPER-------SNVSWNALIGGLVKIGDLRSARQLFD 257
           W  ++ G   V D      VFDL  +R       S  +  +L+     IG     + L  
Sbjct: 179 WNILMGGCVLVSDY---SFVFDLFLKRGCSGIRASVATTLSLLSAAGDIGSFVLGKSLHG 235

Query: 258 EMPER----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
              +     N+   T +ID YAK G +  AR +F+   ++DVV W+ LI  YA++   +E
Sbjct: 236 YCIKIGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEE 295

Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
           AV +   M  + V+P+   LV L+S  S  G++    +V S +    ++L    +  ALV
Sbjct: 296 AVALLQSMRQEGVKPNSSTLVGLLSVYSASGSMQGVRYVTSLIEEEKLELD-VILGTALV 354

Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
           D+ AKCG +D A E+FE M N+DV S+ ++I G  IHG    A+SLF+RM +EG  P+E+
Sbjct: 355 DVYAKCGFLDEAMEIFERMENKDVKSWTAVISGHGIHGQAINAISLFNRMENEGFRPNEI 414

Query: 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493
            F  +LTACSH GLV +G  FF+ M   +   P  EHY C++DLLGR G L  A+EL+ S
Sbjct: 415 TFLAILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHYGCLIDLLGRAGMLHEAFELIKS 474

Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553
           +P++  A++W  LL AC+++ D++LGE V + L      +    +L+S  YA A R  D+
Sbjct: 475 LPIKGDATSWRTLLSACRVHGDVKLGECVKDVLSNFYTPHPTDSLLISGTYAAAGRISDL 534

Query: 554 CLVRSKMKE 562
               ++M+E
Sbjct: 535 ----TRMQE 539


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 207/637 (32%), Positives = 307/637 (48%), Gaps = 125/637 (19%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN--------------- 100
           VH+H+I  G +     +   + + +  ++ L Y+  +F  I NP+               
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEM-YCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALG 93

Query: 101 ------------------TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142
                             +  +N ++ GY+ N        +F  + R++  PD +TF  V
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 143 IKACS-HVLSVREGTAIHAAVIRWG---VDEDVFVGTSLIDLYGKRKE---ISC-----A 190
           + A    V + ++   +H AV++ G   V   V    +L+ +Y KR     ISC     A
Sbjct: 154 LSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL--NALLSVYVKRASELGISCSAMVSA 211

Query: 191 RKVFDEMPERNVVSWT-------------------------------AMIVGYASVGDLV 219
           RK+FDEMP+R+ ++WT                               AMI GY   G   
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 220 EAKTV----------FD-------------------------------LMPERS---NVS 235
           EA T+          FD                               L P  S   +VS
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVS 331

Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
            NALI    K   +  AR++F  MP RN++++  ++ GY   G M  A+S FE  P +++
Sbjct: 332 -NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
           +  + +ISG AQNG  DE +K+F  M     +P +F     ++ACS +G L+    + + 
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
           L     + S   V  A++ M AKCG ++ A  +F TMP+ D+VS+ SMI  L  HGHG +
Sbjct: 451 LVHLGYE-SSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVK 509

Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
           A+ LFD+ML EG+ PD + F  VLTACSH GLVE G  +F +M   Y I P  +HYA MV
Sbjct: 510 AIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMV 569

Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
           DL  R G    A  +++SMP +P A  W ALL  C+++ +++LG   A +LF+L PQN G
Sbjct: 570 DLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDG 629

Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
           +YVLLSNIYA   RW +V  VR  M+++ +RK P CS
Sbjct: 630 TYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACS 666



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 213/469 (45%), Gaps = 88/469 (18%)

Query: 28  PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLE-QDHSLVAHFISLCHSLATPL 86
           P +F   S +LSAL L    + Q    Q+H  ++K G+     S++   +S+    A+ L
Sbjct: 145 PDDFTFTS-VLSALVLFVGNEQQCG--QMHCAVVKTGMGCVSSSVLNALLSVYVKRASEL 201

Query: 87  SYSTA-------VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR---------- 129
             S +       +F+ +   +   W T++ GY +N        +F  ++           
Sbjct: 202 GISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMI 261

Query: 130 ---------EEAVP------------DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD 168
                    +EA+             D  T+  +I AC++V S + G  +HA +++  ++
Sbjct: 262 SGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELN 321

Query: 169 ED----VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTV 224
            +    + V  +LI LY K  ++  ARK+F  MP RN+++W A++ GY + G + EAK+ 
Sbjct: 322 PNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSF 381

Query: 225 FDLMPERSNVSWNALIGGLVK-----------------------------------IGDL 249
           F+ MP ++ ++   +I GL +                                   +G L
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL 441

Query: 250 RSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
            + RQL  ++     E ++     MI  YAK G + +A S+F   P  D+V+W+++I+  
Sbjct: 442 ENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAAL 501

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-NWVDSYLSRSHMDLS 364
            Q+G   +A+++F  M  + V PD    +++++ACS  G ++   ++ +S L    +   
Sbjct: 502 GQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPC 561

Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSMIKGLSIHGH 412
             H  A +VD+  + G    A  + ++MP++     + +++ G  IHG+
Sbjct: 562 EDHY-ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGN 609



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 122/521 (23%), Positives = 206/521 (39%), Gaps = 149/521 (28%)

Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
           A+HA +I  G          L+++Y K   +  AR++F+E+P  + ++ T +I  Y ++G
Sbjct: 34  AVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALG 93

Query: 217 DLVEAKTVFDLMP--ERSNVSWNALIGGLVKIGDLRSARQLF----------DEMPERNV 264
           +L   + +F+  P   R +V +NA+I G    GD  SA +LF          D+    +V
Sbjct: 94  NLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSV 153

Query: 265 VSYTTMIDG-------------------------------YAKVGD--------MTSARS 285
           +S   +  G                               Y K           M SAR 
Sbjct: 154 LSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARK 213

Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM------------------------ 321
           LF+  P RD + W+ +I+GY +N   + A ++F  M                        
Sbjct: 214 LFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEA 273

Query: 322 ---CSK----NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD------LSRAHV 368
              C K     +Q D+    +++SAC+ VG+  +   V +Y+ ++ ++      LS ++ 
Sbjct: 274 LTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNA 333

Query: 369 IAALVDMNAK----------------------------CGNMDRAAELFETMPNRDVVSY 400
           +  L   N K                             G M+ A   FE MP +++++ 
Sbjct: 334 LITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTL 393

Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF------ 454
             MI GL+ +G G + + LF +M  +G  P + AF   LTACS +G +E+G +       
Sbjct: 394 TVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVH 453

Query: 455 ----------------------FEAMQNVYAIVPSPE--HYACMVDLLGRTGHLKSAYEL 490
                                  EA ++V+  +PS +   +  M+  LG+ GH   A EL
Sbjct: 454 LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIEL 513

Query: 491 LNSMPVE---PHASAWGALLGACKLYSDIELGELVANRLFE 528
            + M  E   P    +  +L AC     +E G    N + E
Sbjct: 514 FDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE 554



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 54/311 (17%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLAT------PLSYSTAVFNRIVNPNTFLWNTLL 108
           QVH++I+K  L  +HS     +S+ ++L T       +  +  +F  +   N   WN +L
Sbjct: 310 QVHAYILKNELNPNHSFC---LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAIL 366

Query: 109 KGYSQNSRFIEVFTIF---------------------------VRLIREEAV----PDKY 137
            GY    R  E  + F                           ++L ++  +    P  +
Sbjct: 367 SGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDF 426

Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
            F   + ACS + ++  G  +HA ++  G +  + VG ++I +Y K   +  A  VF  M
Sbjct: 427 AFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM 486

Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRS 251
           P  ++VSW +MI      G  V+A  +FD M      P+R  +++  ++      G +  
Sbjct: 487 PSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDR--ITFLTVLTACSHAGLVEK 544

Query: 252 ARQLFDEMPERNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGY 305
            R  F+ M E   ++     Y  M+D + + G  + AR + ++ P +     W AL++G 
Sbjct: 545 GRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGC 604

Query: 306 AQNGQPDEAVK 316
             +G  D  ++
Sbjct: 605 RIHGNMDLGIE 615



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 94/184 (51%), Gaps = 11/184 (5%)

Query: 55  QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
           Q+H+ ++  G E   S+    IS+ ++    +  + +VF  + + +   WN+++    Q+
Sbjct: 446 QLHAQLVHLGYESSLSVGNAMISM-YAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQH 504

Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVD--EDV 171
              ++   +F ++++E   PD+ TF  V+ ACSH   V +G     +++  +G+   ED 
Sbjct: 505 GHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDH 564

Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMIVGYASVGDL---VE-AKTVFD 226
           +    ++DL+ +    S AR V D MP +     W A++ G    G++   +E A+ +F 
Sbjct: 565 Y--ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFK 622

Query: 227 LMPE 230
           LMP+
Sbjct: 623 LMPQ 626


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 270/483 (55%), Gaps = 10/483 (2%)

Query: 98  NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
           N +   WN+L+KGY QN  + E    F  +I     PD+ +   VI A   + ++  G  
Sbjct: 327 NADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGME 386

Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
           +HA VI+ G D ++ VG +LID+Y K        + F  M E++++SWT +I GYA    
Sbjct: 387 LHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDC 446

Query: 218 LVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------NVVSYTT 269
            VEA  +F D+  +R  +    ++G +++   +  +  +  E+          + V    
Sbjct: 447 HVEALQLFRDVAKKRMEID-EMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNE 505

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++D Y K  +M  A  +FE+   +DVV+W+++IS  A NG  +EAV++F  M    +  D
Sbjct: 506 LVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLAD 565

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
              L+ ++SA + +  L     +  YL R    L    +  A+VDM A CG++  A  +F
Sbjct: 566 SVALLCILSAAASLSALKKGREIHGYLLRKGFCL-EGSIAVAVVDMYACCGDLQSAKAVF 624

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
           + +  + ++ Y SMI    +HG G+ +V LF++M  E ++PD ++F  +L ACSH GL++
Sbjct: 625 DRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLD 684

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
           +G RF + M+  Y + P PEHY C+VD+LGR   +  A+E +  M  EP    W ALL A
Sbjct: 685 EGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAA 744

Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
           C+ +S+ E+GE+ A RL ELEP+N G+ VL+SN++A   RW DV  VR+KMK  G+ K P
Sbjct: 745 CRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHP 804

Query: 570 GCS 572
           GCS
Sbjct: 805 GCS 807



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 185/381 (48%), Gaps = 14/381 (3%)

Query: 73  AHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132
           A+ + LC   +  LS    VF+ + +   F WN L+  Y  N        I+ R +R E 
Sbjct: 101 AYLLELCGK-SRALS-QEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIY-RNMRVEG 157

Query: 133 VP-DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
           VP D Y+FP+++KAC  +  +R GT +H  +++ G +   F+  +L+ +Y K   +S A+
Sbjct: 158 VPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAK 217

Query: 192 KVFDEMPER-NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR 250
           ++FD   E+ + V W +++  Y++ G  +E   +F  M      S +  I   +   +  
Sbjct: 218 RLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGF 277

Query: 251 SARQLFDEMPER--------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
           S  +L  E+            V     +I  YA+ G M  A  +     + DVV W++LI
Sbjct: 278 SYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLI 337

Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
            GY QN    EA++ F DM +   +PDE  L S+++A  ++ NL     + +Y+ +   D
Sbjct: 338 KGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWD 397

Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
            S   V   L+DM +KC         F  M  +D++S+ ++I G +++    +A+ LF  
Sbjct: 398 -SNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRD 456

Query: 423 MLSEGLTPDEVAFTIVLTACS 443
           +  + +  DE+    +L ACS
Sbjct: 457 VAKKRMEIDEMMLGSILRACS 477


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 295/547 (53%), Gaps = 15/547 (2%)

Query: 35  SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
           +C+LS         L T LH +    +  GLE D S VA+ +   +S    L  +  +F+
Sbjct: 163 ACVLSVCASEAMLDLGTQLHGI---AVSCGLELD-SPVANTLLAMYSKCQCLQAARKLFD 218

Query: 95  RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
                +   WN ++ GY QN    E   +F  +I     PD  TF   +   + +LS++ 
Sbjct: 219 TSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKH 278

Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
              IH  +IR  V  DVF+ ++LID+Y K +++  A+K+  +    + V  T MI GY  
Sbjct: 279 CKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVL 338

Query: 215 VGDLVEAKTVFD-LMPER---SNVSWNALIGGLVKIGDLRSARQLFD-----EMPERNVV 265
            G   EA   F  L+ ER   ++V+++++      +  L   ++L       ++ E+  V
Sbjct: 339 NGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHV 398

Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
             + ++D YAK G +  A  +F    ++D + W+++I+  +QNG+P EA+ +F  M  + 
Sbjct: 399 G-SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEG 457

Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
            + D   +   +SAC+ +  L     +   + +  +  S  +  ++L+DM AKCGN++ +
Sbjct: 458 TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLR-SDLYAESSLIDMYAKCGNLNFS 516

Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
             +F+ M  R+ VS+ S+I     HG  ++ ++LF  ML  G+ PD V F  +++AC H 
Sbjct: 517 RRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576

Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
           G V++G R++  M   Y I    EHYAC+ D+ GR G L  A+E +NSMP  P A  WG 
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGT 636

Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
           LLGAC ++ ++EL E+ +  LF+L+P N+G YVLL+N+ A A +W  V  VRS MKERG+
Sbjct: 637 LLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGV 696

Query: 566 RKIPGCS 572
           RK+PG S
Sbjct: 697 RKVPGYS 703



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 210/426 (49%), Gaps = 27/426 (6%)

Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
           T  WN +++G++   +F      +++++     PDKYTFP V+KAC  + SV+ G  +H 
Sbjct: 23  TSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHE 82

Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
            V   G+ EDVFVG+SLI LY +   +S A+ +FD +P+++ V W  M+ GY   GD   
Sbjct: 83  TVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGN 142

Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT-----------T 269
           A  +F L    S +  N++    V    + ++  + D   + + ++ +           T
Sbjct: 143 AIKIF-LEMRHSEIKPNSVTFACVL--SVCASEAMLDLGTQLHGIAVSCGLELDSPVANT 199

Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
           ++  Y+K   + +AR LF+ +P  D+V+W+ +ISGY QNG   EA  +F  M S  ++PD
Sbjct: 200 LLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPD 259

Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
                S +   +++ +L     +  Y+ R H  +    + +AL+D+  KC +++ A ++ 
Sbjct: 260 SITFASFLPCVNELLSLKHCKEIHGYIIR-HAVVLDVFLKSALIDIYFKCRDVEMAQKIL 318

Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
               + D V   +MI G  ++G  ++A+  F  ++ E + P  V F+ +  A + +  + 
Sbjct: 319 CQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN 378

Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMV-----DLLGRTGHLKSAYELLNSMPVEPHASAWG 504
            G           +I+ +     C V     D+  + G L  A  + N +  E  A  W 
Sbjct: 379 LGKELHG------SIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRI-TEKDAICWN 431

Query: 505 ALLGAC 510
           +++ +C
Sbjct: 432 SMITSC 437



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 235/476 (49%), Gaps = 24/476 (5%)

Query: 56  VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
           VH  +   GL++D  + +  I L ++    LS +  +F+ I   ++ LWN +L GY +N 
Sbjct: 80  VHETVNLMGLKEDVFVGSSLIKL-YAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNG 138

Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
                  IF+ +   E  P+  TF  V+  C+    +  GT +H   +  G++ D  V  
Sbjct: 139 DSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVAN 198

Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS--- 232
           +L+ +Y K + +  ARK+FD  P+ ++VSW  +I GY   G + EA+ +F  M       
Sbjct: 199 TLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKP 258

Query: 233 -NVSWNALIGGLVKIGDLRSARQLFDEMPERNVV----SYTTMIDGYAKVGDMTSARSLF 287
            ++++ + +  + ++  L+  +++   +    VV      + +ID Y K  D+  A+ + 
Sbjct: 259 DSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKIL 318

Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
             +   D V  + +ISGY  NG+  EA++ F  +  + ++P      S+  A + +  L+
Sbjct: 319 CQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN 378

Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
           L   +   + ++ +D  + HV +A++DM AKCG +D A  +F  +  +D + + SMI   
Sbjct: 379 LGKELHGSIIKTKLD-EKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSC 437

Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM------QNV 461
           S +G   +A++LF +M  EG   D V+ +  L+AC+++  +  G      M       ++
Sbjct: 438 SQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDL 497

Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
           YA        + ++D+  + G+L  +  + + M  E +  +W +++ A   + D++
Sbjct: 498 YA-------ESSLIDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGDLK 545



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
           Y + G +  A++LF         AW+ +I G+   GQ + A+  +  M    V PD++  
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
             ++ AC  + ++ +   V   ++   +      V ++L+ + A+ G++  A  LF+ +P
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLK-EDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
            +D V +  M+ G   +G    A+ +F  M    + P+ V F  VL+ C+   +++ G
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
           M  + G++  A  LF T+      ++  MI+G ++ G    A+  + +ML  G++PD+  
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
           F  V+ AC  +  V+ G    E + N+  +       + ++ L    GHL  A  L +++
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETV-NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 495 PVEPHASAWGALL 507
           P +  +  W  +L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/498 (33%), Positives = 284/498 (57%), Gaps = 17/498 (3%)

Query: 89  STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
           ++ VF  +   +   W +++   +Q   + +V  +   +  E  +P+K T   ++ AC  
Sbjct: 175 ASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQ 234

Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
             +V EG  ++  V ++G++ DV +  +LI +Y K   +S A + F  MP R   SW  +
Sbjct: 235 TQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTL 294

Query: 209 IVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
           I G+    +  EA  +F+ M      P+   ++  +++    ++G+LR    +   + + 
Sbjct: 295 IDGFVQNHEHKEALRIFEEMLLHGVTPD--GITLVSVLSACAQLGELRKGMHVHSYIKDN 352

Query: 263 NV----VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
            +    +   ++I+ YAK GDM +A  +F+    +DVV+W+ ++ GY +  Q   A  +F
Sbjct: 353 GICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLF 412

Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI-AALVDMNA 377
            +M    V   E  LVSL+SACSQ+G LD    + SY+    M++++   + +ALVDM A
Sbjct: 413 EEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEE--MNVAKDLCLESALVDMYA 470

Query: 378 KCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFT 436
           KCG +D A+E+F  M ++  +S+ +MI GL+ +G+G++AV LFD+ML  +   PD +   
Sbjct: 471 KCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLK 530

Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
            VL AC+HVG+V++G R+F  M ++  +VP  EHY C+VDLLGR G L  A+  +  MP+
Sbjct: 531 AVLGACAHVGMVDEGLRYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPI 589

Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
           EP+   WG+LL AC+++  ++LG+++   +  + P + G +VL+SN++A   +W DV  V
Sbjct: 590 EPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHV 649

Query: 557 RSKMKERGLRKIPGCSSL 574
           R  M  RG+ K PG SS+
Sbjct: 650 RGLMGSRGIEKTPGHSSV 667



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/505 (29%), Positives = 249/505 (49%), Gaps = 31/505 (6%)

Query: 22  NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
           N S++ PI           L  +  C  + HL ++H  +++  L  D  +    I+L   
Sbjct: 9   NASQARPIRH-------HLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIAL--- 58

Query: 82  LATP-----LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
           LA+P     + Y+  VF+ +  PN F+WN +++GYS      +   +F  + R    PD 
Sbjct: 59  LASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDN 118

Query: 137 YTFPLVIKACSHVLSVR---EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
           YT   V+ A +    ++    G AIHA V R G   DVFV + L++ YG  + +  A KV
Sbjct: 119 YTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKV 178

Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDL 249
           F+EM ER+VVSWT+MI   A  G   +   +   M       + V+  +L+    +   +
Sbjct: 179 FEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAV 238

Query: 250 RSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
              R +++++     E +V     +I  Y K G ++ A   F+A P R   +W+ LI G+
Sbjct: 239 DEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGF 298

Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
            QN +  EA++IF +M    V PD   LVS++SAC+Q+G L     V SY+  + +    
Sbjct: 299 VQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDN 358

Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG-RQAVSLFDRML 424
             +  +L++M AKCG+M  A  +F+TM  +DVVS+  M+ G  + GH    A +LF+ M 
Sbjct: 359 I-LTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGY-VKGHQFTMAFNLFEEMK 416

Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
              +   E+A   +L+ACS +G ++ G      ++ +  +       + +VD+  + G +
Sbjct: 417 IAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEM-NVAKDLCLESALVDMYAKCGCI 475

Query: 485 KSAYELLNSMPVEPHASAWGALLGA 509
            +A E+   M       +W A++G 
Sbjct: 476 DTASEIFRKMQ-HKQTLSWNAMIGG 499


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,940,579,283
Number of Sequences: 23463169
Number of extensions: 364982253
Number of successful extensions: 1020294
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8685
Number of HSP's successfully gapped in prelim test: 3247
Number of HSP's that attempted gapping in prelim test: 786719
Number of HSP's gapped (non-prelim): 58955
length of query: 574
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 426
effective length of database: 8,886,646,355
effective search space: 3785711347230
effective search space used: 3785711347230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)