BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046956
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSARS 285
P S +W L K GD A + + E+ N ++ + + Y K GD A
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 286 LFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIF 318
++ A + D AW L + Y + G DEA++ +
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSARS 285
P S +W L K GD A + + E+ N ++ + + Y K GD A
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 286 LFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIF 318
++ A + + AW L + Y + G DEA++ +
Sbjct: 65 YYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
EF L +L+S+CS++ L+LS W + + H+ ++ AHV + +N
Sbjct: 157 EFALQTLLSSCSRLDELNLS-WCFDF-TEKHVQVAVAHVSETITQLN 201
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
+ R A L+ +G+ + + F +T CS D + ++ + +
Sbjct: 74 YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA---LDTLCLLLTSDEIVKVIQAENYQ 130
Query: 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL-VANRLFELE 530
A L GHL L P E A A +L + E G L V NRL EL
Sbjct: 131 A--FRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAA--ENGHLHVLNRLCELA 186
Query: 531 PQNAGSYVLLSNIYATADRWLDV 553
P A + + N YA RW V
Sbjct: 187 PTEATAXIQAENYYAF--RWAAV 207
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 323 SKNVQPDEFILVSLMSACSQVGNLDLSNW 351
+ N +PD FI+V + S++ NL++ NW
Sbjct: 97 NSNQKPDHFIVVQKTTGNSKITNLNIQNW 125
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
EF L +L+S+CS++ L+LS W + + H+ ++ AHV + +N
Sbjct: 119 EFALQTLLSSCSRLDELNLS-WCFDF-TEKHVQVAVAHVSETITQLN 163
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 107 LLKGYSQNSRFIEVF-TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
L K ++ + FI+ F + + I E+ +P+ P VI ++ G A+H
Sbjct: 16 LEKAQAEYAGFIQEFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTK---- 71
Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKV-FD---EMPERNVVSWTAMI 209
++ + V +D K +I R++ FD + ER W ++
Sbjct: 72 NIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQKWNQVV 119
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 272 DGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
+ Y K GD A ++ A + R AW L + Y + G DEA++ + + +
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
E +L +A + G+ D + ++ Y +D A L + K G+ D A E
Sbjct: 69 AE-AWYNLGNAYYKQGDYDEA--IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 389 FE 390
++
Sbjct: 126 YQ 127
>pdb|3VA2|C Chain C, Crystal Structure Of Human Interleukin-5 In Complex With
Its Alpha Receptor
Length = 322
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 22 NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
N IN PK T I + K T LH+ S ++ L+ DHSL+A +
Sbjct: 49 NLEYQVKINAPKED---DYETRITESKCVTILHKGFSASVRTILQNDHSLLASSWASAEL 105
Query: 82 LATPLSYSTAVFNRIVNPNT 101
A P S T++ N NT
Sbjct: 106 HAPPGSPGTSIVNLTCTTNT 125
>pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
Length = 184
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
S+V +LDL +R +SR V+A+L+D G + R E+F
Sbjct: 2 SRVSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVF 50
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 316 KIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
++FSDM K+ QP I+ + SA G++ + W++ YLS H+
Sbjct: 325 QMFSDMVLKDGFQPSRSIIFASWSA-GDFGSVGATEWLEGYLSSLHL 370
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 316 KIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
++FSDM K+ QP I+ + SA G++ + W++ YLS H+
Sbjct: 311 QMFSDMVLKDGFQPSRSIIFASWSA-GDFGSVGATEWLEGYLSSLHL 356
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 316 KIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
++FSDM K+ QP I+ + SA G++ + W++ YLS H+
Sbjct: 310 QMFSDMVLKDGFQPSRSIIFASWSA-GDFGSVGATEWLEGYLSSLHL 355
>pdb|3QT2|A Chain A, Structure Of A Cytokine Ligand-Receptor Complex
pdb|3QT2|B Chain B, Structure Of A Cytokine Ligand-Receptor Complex
Length = 317
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 22 NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
N IN PK T I + K T LH S ++ L+ DHSL+A +
Sbjct: 44 NLEYQVKINAPKED---DYETRITESKAVTILHMGFSASVRTILQNDHSLLASSWASAEL 100
Query: 82 LATPLSYSTAVFNRIVNPNT 101
A P S T++ N NT
Sbjct: 101 HAPPGSPGTSIVNLTCTTNT 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,025,020
Number of Sequences: 62578
Number of extensions: 695197
Number of successful extensions: 1410
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 29
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)