BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046956
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/537 (59%), Positives = 413/537 (76%), Gaps = 1/537 (0%)
Query: 37 LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
LLS TL K CK + HL+Q+H+ II+KGLEQD +L++ FIS S ++ LSYS++VF R+
Sbjct: 10 LLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERV 69
Query: 97 VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREG 155
+P T+LWN L+KGYS F E +I +R++R A PD+YTFPLV+K CS+ VR G
Sbjct: 70 PSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVG 129
Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
+++H V+R G D+DV VGTS +D YGK K++ ARKVF EMPERN VSWTA++V Y
Sbjct: 130 SSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKS 189
Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
G+L EAK++FDLMPER+ SWNAL+ GLVK GDL +A++LFDEMP+R+++SYT+MIDGYA
Sbjct: 190 GELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYA 249
Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
K GDM SAR LFE A DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI+V
Sbjct: 250 KGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 309
Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
LMSACSQ+G +L VDSYL + S +V+ AL+DMNAKCG+MDRAA+LFE MP R
Sbjct: 310 LMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
D+VSYCSM++G++IHG G +A+ LF++M+ EG+ PDEVAFT++L C LVE+G R+F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429
Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
E M+ Y+I+ SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L+ +
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489
Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
E+ E+VA LFELEPQ+AGSYVLLSNIYA DRW DV +R KM E G+ KI G S
Sbjct: 490 TEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/538 (39%), Positives = 345/538 (64%), Gaps = 6/538 (1%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
L + KC + Q+H+ II++ L +D + IS SL + + VFN++ PN
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISAL-SLCRQTNLAVRVFNQVQEPN 81
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
L N+L++ ++QNS+ + F +F + R D +T+P ++KACS + +H
Sbjct: 82 VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISC--ARKVFDEMPERNVVSWTAMIVGYASVGDL 218
+ + G+ D++V +LID Y + + A K+F++M ER+ VSW +M+ G G+L
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
+A+ +FD MP+R +SWN ++ G + ++ A +LF++MPERN VS++TM+ GY+K G
Sbjct: 202 RDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAG 261
Query: 279 DMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
DM AR +F+ P ++VV W+ +I+GYA+ G EA ++ M + ++ D ++S+
Sbjct: 262 DMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISI 321
Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
++AC++ G L L + S L RS++ S A+V+ AL+DM AKCGN+ +A ++F +P +D
Sbjct: 322 LAACTESGLLSLGMRIHSILKRSNLG-SNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380
Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
+VS+ +M+ GL +HGHG++A+ LF RM EG+ PD+V F VL +C+H GL+++G +F
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440
Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
+M+ VY +VP EHY C+VDLLGR G LK A +++ +MP+EP+ WGALLGAC++++++
Sbjct: 441 SMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEV 500
Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
++ + V + L +L+P + G+Y LLSNIYA A+ W V +RSKMK G+ K G SS+
Sbjct: 501 DIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/576 (38%), Positives = 340/576 (59%), Gaps = 43/576 (7%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQD-HSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
++LI++C L Q H H+I+ G D +S F S L Y+ VF+ I P
Sbjct: 34 ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93
Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAI 158
N+F WNTL++ Y+ + F+ ++ E + P+KYTFP +IKA + V S+ G ++
Sbjct: 94 NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H ++ V DVFV SLI Y ++ A KVF + E++VVSW +MI G+ G
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213
Query: 219 VEAKTVFDLM------------------------------------PERSNVSW---NAL 239
+A +F M R NV+ NA+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273
Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
+ K G + A++LFD M E++ V++TTM+DGYA D +AR + + P +D+VAW+
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWN 333
Query: 300 ALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
ALIS Y QNG+P+EA+ +F ++ KN++ ++ LVS +SAC+QVG L+L W+ SY+ +
Sbjct: 334 ALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK 393
Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
+ ++ HV +AL+ M +KCG+++++ E+F ++ RDV + +MI GL++HG G +AV
Sbjct: 394 HGIRMN-FHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVD 452
Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
+F +M + P+ V FT V ACSH GLV++ F M++ Y IVP +HYAC+VD+L
Sbjct: 453 MFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVL 512
Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
GR+G+L+ A + + +MP+ P S WGALLGACK+++++ L E+ RL ELEP+N G++V
Sbjct: 513 GRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHV 572
Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
LLSNIYA +W +V +R M+ GL+K PGCSS+
Sbjct: 573 LLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/517 (38%), Positives = 321/517 (62%), Gaps = 8/517 (1%)
Query: 60 IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFI 118
+++ +E + + F+ + S A + Y+ +F+ R ++FL N+++K Y + ++
Sbjct: 1 MLRHAIETNVQIFTKFLVISAS-AVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYP 59
Query: 119 EVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
+ F ++ L +E PD +TF + K+CS + V +G +H+ + R+G D++V T +
Sbjct: 60 DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119
Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-W 236
+D+Y K ++ CAR FDEMP R+ VSWTA+I GY G+L A +FD MP +V +
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179
Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
NA++ G VK GD+ SAR+LFDEM + V+++TTMI GY + D+ +AR LF+A P+R++V
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239
Query: 297 AWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
+W+ +I GY QN QP E +++F +M + ++ PD+ ++S++ A S G L L W +
Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299
Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
+ R +D + V A++DM +KCG +++A +F+ MP + V S+ +MI G +++G+ R
Sbjct: 300 VQRKKLD-KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358
Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
A+ LF M+ E PDE+ V+TAC+H GLVE+G ++F M+ + + EHY CMV
Sbjct: 359 ALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMV 416
Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
DLLGR G LK A +L+ +MP EP+ + L AC Y DIE E + + ELEPQN G
Sbjct: 417 DLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDG 476
Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+YVLL N+YA RW D +V++ M++ +K GCS
Sbjct: 477 NYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCS 513
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/596 (35%), Positives = 335/596 (56%), Gaps = 47/596 (7%)
Query: 25 RSAPINFPKPSCLL---SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH- 80
R PIN+ + L+L++KCKL HL Q+ + +I GL D + I+ C
Sbjct: 38 RDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCAL 97
Query: 81 SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE---EAVPDKY 137
S + L YS + I NPN F WN ++G+S++ E F ++ +++R E+ PD +
Sbjct: 98 SESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157
Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
T+P++ K C+ + G I V++ ++ V + I ++ ++ ARKVFDE
Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217
Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-------------SNVSW-------- 236
P R++VSW +I GY +G+ +A V+ LM S+ S
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Query: 237 ------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
NAL+ K GD+ AR++FD + +R +VS+TTMI GYA+ G
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
+ +R LF+ ++DVV W+A+I G Q + +A+ +F +M + N +PDE ++ +S
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397
Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
ACSQ+G LD+ W+ Y+ + + L+ A + +LVDM AKCGN+ A +F + R+ +
Sbjct: 398 ACSQLGALDVGIWIHRYIEKYSLSLNVA-LGTSLVDMYAKCGNISEALSVFHGIQTRNSL 456
Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
+Y ++I GL++HG A+S F+ M+ G+ PDE+ F +L+AC H G+++ G +F M
Sbjct: 457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM 516
Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
++ + + P +HY+ MVDLLGR G L+ A L+ SMP+E A+ WGALL C+++ ++EL
Sbjct: 517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576
Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
GE A +L EL+P ++G YVLL +Y A+ W D R M ERG+ KIPGCSS+
Sbjct: 577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/579 (35%), Positives = 336/579 (58%), Gaps = 46/579 (7%)
Query: 40 ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
+L+L+ CK L +H+ +IK GL + ++ I C + +P L Y+ +VF
Sbjct: 36 SLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFC--ILSPHFEGLPYAISVFKT 93
Query: 96 IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
I PN +WNT+ +G++ +S + ++V +I +P+ YTFP V+K+C+ + +EG
Sbjct: 94 IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153
Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
IH V++ G D D++V TSLI +Y + + A KVFD+ P R+VVS+TA+I GYAS
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213
Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----------V 265
G + A+ +FD +P + VSWNA+I G + G+ + A +LF +M + NV V
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 266 S-----------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
S +ID Y+K G++ +A LFE P +DV+
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
+W+ LI GY EA+ +F +M P++ ++S++ AC+ +G +D+ W+ Y+
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393
Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
+ ++ A + +L+DM AKCG+++ A ++F ++ ++ + S+ +MI G ++HG
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
+ LF RM G+ PD++ F +L+ACSH G+++ G F M Y + P EHY CM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513
Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
DLLG +G K A E++N M +EP W +LL ACK++ ++ELGE A L ++EP+N G
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573
Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
SYVLLSNIYA+A RW +V R+ + ++G++K+PGCSS+
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 320/544 (58%), Gaps = 19/544 (3%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
+LI + L Q+H+ ++ GL+ L+ I S ++++ VF+ + P
Sbjct: 26 SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD-ITFARQVFDDLPRPQI 84
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
F WN +++GYS+N+ F + ++ + PD +TFP ++KACS + ++ G +HA
Sbjct: 85 FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLV 219
V R G D DVFV LI LY K + + AR VF+ +PER +VSWTA++ YA G+ +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 220 EAKTVFDLMPERS-NVSWNALI---GGLVKIGDLRSARQLFD-------EMPERNVVSYT 268
EA +F M + W AL+ + DL+ R + E+ ++S
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264
Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
TM YAK G + +A+ LF+ +++ W+A+ISGYA+NG EA+ +F +M +K+V+P
Sbjct: 265 TM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
D + S +SAC+QVG+L+ + + Y+ RS + +AL+DM AKCG+++ A +
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380
Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
F+ +RDVV + +MI G +HG R+A+SL+ M G+ P++V F +L AC+H G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440
Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
+GW FF M + + I P +HYAC++DLLGR GHL AYE++ MPV+P + WGALL
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499
Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
ACK + +ELGE A +LF ++P N G YV LSN+YA A W V VR +MKE+GL K
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559
Query: 569 PGCS 572
GCS
Sbjct: 560 VGCS 563
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/539 (38%), Positives = 305/539 (56%), Gaps = 10/539 (1%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
TLI HL Q+H +I L D LV + YS +F+ PN
Sbjct: 18 TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRT-LFFRQTKYSYLLFSHTQFPNI 76
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
FL+N+L+ G+ N F E +F+ + + +TFPLV+KAC+ S + G +H+
Sbjct: 77 FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSL 136
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
V++ G + DV TSL+ +Y ++ A K+FDE+P+R+VV+WTA+ GY + G EA
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196
Query: 222 KTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDG 273
+F M E + ++ V +GDL S + M E +N TT+++
Sbjct: 197 IDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNL 256
Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
YAK G M ARS+F++ ++D+V WS +I GYA N P E +++F M +N++PD+F +
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSI 316
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
V +S+C+ +G LDL W S + R H L+ + AL+DM AKCG M R E+F+ M
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
+D+V + I GL+ +GH + + ++F + G++PD F +L C H GL++DG R
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435
Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
FF A+ VYA+ + EHY CMVDL GR G L AY L+ MP+ P+A WGALL C+L
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495
Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
D +L E V L LEP NAG+YV LSNIY+ RW + VR M ++G++KIPG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYS 554
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/485 (39%), Positives = 296/485 (61%), Gaps = 11/485 (2%)
Query: 89 STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
+ +VF+R+ N WN LL Y QNS+ E +F + + LV C
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF---------KSRENWALVSWNCLL 226
Query: 149 VLSVREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
V++ + A ++ DV ++I Y + +I AR++FDE P ++V +WTA
Sbjct: 227 GGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
M+ GY + EA+ +FD MPER+ VSWNA++ G V+ + A++LFD MP RNV ++
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
TMI GYA+ G ++ A++LF+ P RD V+W+A+I+GY+Q+G EA+++F M + +
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
+ S +S C+ V L+L + L + + V AL+ M KCG+++ A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEAND 465
Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
LF+ M +D+VS+ +MI G S HG G A+ F+ M EGL PD+ VL+ACSH GL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525
Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
V+ G ++F M Y ++P+ +HYACMVDLLGR G L+ A+ L+ +MP EP A+ WG LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585
Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
GA +++ + EL E A+++F +EP+N+G YVLLSN+YA++ RW DV +R +M+++G++K
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645
Query: 568 IPGCS 572
+PG S
Sbjct: 646 VPGYS 650
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 149/534 (27%), Positives = 240/534 (44%), Gaps = 74/534 (13%)
Query: 52 HLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYS-TAVFNRIVNPNTFLWNTLLKG 110
LH + +K+ H A+F SL + T + S T + + + WN +
Sbjct: 15 QLHYTSLNGLKRRCNNAHG-AANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISS 73
Query: 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI-HAAVIRWGVDE 169
Y + R E +F R+ R +V ++ L+ + + ++ W V
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNV-- 131
Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
+I Y + + + AR++F+ MPER+V SW M+ GYA G + +A++VFD MP
Sbjct: 132 -------MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP 184
Query: 230 ERSNVSWNALI-------------------------------GGLVKIGDLRSARQLFDE 258
E+++VSWNAL+ GG VK + ARQ FD
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDS 244
Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
M R+VVS+ T+I GYA+ G + AR LF+ +P +DV W+A++SGY QN +EA ++F
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304
Query: 319 SDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378
M +N E ++++ Q ++++ + M ++ A+
Sbjct: 305 DKMPERN----EVSWNAMLAGYVQGERMEMAKELFDV-----MPCRNVSTWNTMITGYAQ 355
Query: 379 CGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438
CG + A LF+ MP RD VS+ +MI G S GH +A+ LF +M EG + +F+
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415
Query: 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD-----LLGRTGHLKSAYELLNS 493
L+ C+ V +E G Q +V C V + + G ++ A +L
Sbjct: 416 LSTCADVVALELG------KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKE 469
Query: 494 MPVEPHASAWGALLGACKLYSDIELGELVANRLFE------LEPQNAGSYVLLS 541
M + S W ++ YS GE VA R FE L+P +A +LS
Sbjct: 470 MAGKDIVS-WNTMIAG---YSRHGFGE-VALRFFESMKREGLKPDDATMVAVLS 518
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 23/273 (8%)
Query: 86 LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
+S + +F+++ + W ++ GYSQ+ E +FV++ RE ++ +F +
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418
Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
C+ V+++ G +H +++ G + FVG +L+ +Y K I A +F EM +++VSW
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 478
Query: 206 TAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE 261
MI GY+ G A F+ M + + A++ G + RQ F M +
Sbjct: 479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538
Query: 262 R-----NVVSYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPD--- 312
N Y M+D + G + A +L + P + D W L+ +G +
Sbjct: 539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAE 598
Query: 313 -EAVKIFSDMCSKNVQPDE---FILVSLMSACS 341
A KIF+ ++P+ ++L+S + A S
Sbjct: 599 TAADKIFA------MEPENSGMYVLLSNLYASS 625
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
Q+H ++K G E V + + L + + + +F + + WNT++ GYS++
Sbjct: 430 QLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 115 SRFIEV-FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIR-WGVDEDVF 172
F EV F + RE PD T V+ ACSH V +G + + +GV +
Sbjct: 489 G-FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQ 547
Query: 173 VGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKT----VFDL 227
++DL G+ + A + MP E + W ++ G+ A+T +F +
Sbjct: 548 HYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 607
Query: 228 MPERSNV 234
PE S +
Sbjct: 608 EPENSGM 614
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/524 (36%), Positives = 298/524 (56%), Gaps = 35/524 (6%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVN 98
L+ ++ K T + Q H+ ++K GL D + ++ + P +SY+ ++ NRI +
Sbjct: 43 LSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGS 102
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
PN F N++++ Y+ +S T+F ++ PDKY+F V+KAC+ EG I
Sbjct: 103 PNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQI 162
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H I+ G+ DVFV +L+++YG+ ARKV D M
Sbjct: 163 HGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRM--------------------- 201
Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
P R VSWN+L+ ++ G + AR LFDEM ERNV S+ MI GYA G
Sbjct: 202 ----------PVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAG 251
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLM 337
+ A+ +F++ P RDVV+W+A+++ YA G +E +++F+ M + + PD F LVS++
Sbjct: 252 LVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVL 311
Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
SAC+ +G+L WV Y+ + +++ + ALVDM +KCG +D+A E+F RDV
Sbjct: 312 SACASLGSLSQGEWVHVYIDKHGIEI-EGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370
Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
++ S+I LS+HG G+ A+ +F M+ EG P+ + F VL+AC+HVG+++ + FE
Sbjct: 371 STWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEM 430
Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
M +VY + P+ EHY CMVDLLGR G ++ A EL+N +P + + +LLGACK + +E
Sbjct: 431 MSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLE 490
Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
E +ANRL EL +++ Y +SN+YA+ RW V R M+
Sbjct: 491 QAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMR 534
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/530 (37%), Positives = 297/530 (56%), Gaps = 35/530 (6%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH-SLATPLSYSTAVFNRIVNP 99
L+L+ CK L Q+H IK G++ D I C S++ L Y+ + P
Sbjct: 9 LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68
Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAI 158
+ F++NTL++GYS++ +FV ++R+ V PD ++F VIKA + S+R G +
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H ++ G++ +FVGT+LI +YG + ARKV
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKV------------------------- 163
Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
FD M + + V+WNA+I + D+ AR++FD+M RN S+ M+ GY K G
Sbjct: 164 ------FDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAG 217
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
++ SA+ +F P RD V+WS +I G A NG +E+ F ++ + P+E L ++S
Sbjct: 218 ELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLS 277
Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM-PNRDV 397
ACSQ G+ + + ++ ++ V AL+DM ++CGN+ A +FE M R +
Sbjct: 278 ACSQSGSFEFGKILHGFVEKAGYSWI-VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCI 336
Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
VS+ SMI GL++HG G +AV LF+ M + G+TPD ++F +L ACSH GL+E+G +F
Sbjct: 337 VSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSE 396
Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
M+ VY I P EHY CMVDL GR+G L+ AY+ + MP+ P A W LLGAC + +IE
Sbjct: 397 MKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 456
Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
L E V RL EL+P N+G VLLSN YATA +W DV +R M + ++K
Sbjct: 457 LAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKK 506
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 362 bits (928), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 189/554 (34%), Positives = 329/554 (59%), Gaps = 22/554 (3%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSL--ATPLSYSTAVFNRIVN 98
L+ ++ C+ L+Q+H +IK + ++ ++ I C + LSY+ +VF I
Sbjct: 10 LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
P+ ++WN++++GYS + + + ++R+ PD +TFP V+KACS + ++ G+ +
Sbjct: 70 PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H V++ G + +++V T L+ +Y E++ +VF+++P+ NVV+W ++I G+ +
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189
Query: 219 VEAKTVFDLMPERSNVSWNA--LIGGLVKIG---DLRSARQL------------FDEMPE 261
+A F M + + V N ++ LV G D+ + + F
Sbjct: 190 SDAIEAFREM-QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVG 248
Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
NV+ T++ID YAK GD+ +AR LF+ P+R +V+W+++I+GY+QNG +EA+ +F DM
Sbjct: 249 FNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDM 308
Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
+ PD+ +S++ A G L + +Y+S++ + A ++ ALV+M AK G+
Sbjct: 309 LDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF-VKDAAIVCALVNMYAKTGD 367
Query: 382 MDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLT 440
+ A + FE + +D +++ +I GL+ HGHG +A+S+F RM +G TPD + + VL
Sbjct: 368 AESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLY 427
Query: 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA 500
ACSH+GLVE+G R+F M++++ + P+ EHY CMVD+L R G + A L+ +MPV+P+
Sbjct: 428 ACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNV 487
Query: 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560
+ WGALL C ++ ++EL + + + + E E +G YVLLSNIYA A RW DV L+R M
Sbjct: 488 NIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESM 547
Query: 561 KERGLRKIPGCSSL 574
K + + K+ G SS+
Sbjct: 548 KSKRVDKVLGHSSV 561
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 361 bits (927), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 206/590 (34%), Positives = 322/590 (54%), Gaps = 47/590 (7%)
Query: 29 INFPKPSCLLSALTLIKK---CKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLAT 84
+ P P +A T+++K CK H+ Q+H+HI++ + +H L + F S +
Sbjct: 1 MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVI--NHKLNSFLFNLSVSSSSI 58
Query: 85 PLSYSTAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143
LSY+ VF+ I +P + ++N L+ S++S + R+ D+++F ++
Sbjct: 59 NLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPIL 118
Query: 144 KACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203
KA S V ++ EG +H + D FV T +D+Y I+ AR VFDEM R+VV
Sbjct: 119 KAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178
Query: 204 SWTAMIVGYASVGDLVEAKTVFD------LMPER-------------SNVSWN------- 237
+W MI Y G + EA +F+ +MP+ N+ +N
Sbjct: 179 TWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL 238
Query: 238 -------------ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSAR 284
AL+ G + AR+ F +M RN+ T M+ GY+K G + A+
Sbjct: 239 IENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQ 298
Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
+F+ +D+V W+ +IS Y ++ P EA+++F +MC ++PD + S++SAC+ +G
Sbjct: 299 VIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLG 358
Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMI 404
LD + WV S + + ++ S + AL++M AKCG +D ++FE MP R+VVS+ SMI
Sbjct: 359 ILDKAKWVHSCIHVNGLE-SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMI 417
Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
LS+HG A+SLF RM E + P+EV F VL CSH GLVE+G + F +M + Y I
Sbjct: 418 NALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNI 477
Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVAN 524
P EHY CMVDL GR L+ A E++ SMPV + WG+L+ AC+++ ++ELG+ A
Sbjct: 478 TPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAK 537
Query: 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
R+ ELEP + G+ VL+SNIYA RW DV +R M+E+ + K G S +
Sbjct: 538 RILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 361 bits (926), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 207/579 (35%), Positives = 316/579 (54%), Gaps = 46/579 (7%)
Query: 39 SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL----------SY 88
S + ++ CK ++Q+H +IK G+ ++ +L + S P Y
Sbjct: 14 STIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEY 73
Query: 89 STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
F+ + FLWN ++K +S + + ++ DK++ LV+KACS
Sbjct: 74 HVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSR 133
Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
+ V+ G IH + + G+ D+F+ LI LY K + +R++FD MP+R+ VS+ +M
Sbjct: 134 LGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSM 193
Query: 209 IVGYASVGDLVEAKTVFDLMP----------------------------------ERSNV 234
I GY G +V A+ +FDLMP E+ +
Sbjct: 194 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 253
Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
SWN++I G VK G + A+ LFD MP R+VV++ TMIDGYAK+G + A++LF+ P RD
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313
Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVD 353
VVA++++++GY QN EA++IFSDM + ++ PD+ LV ++ A +Q+G L + +
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373
Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
Y+ L + AL+DM +KCG++ A +FE + N+ + + +MI GL+IHG G
Sbjct: 374 LYIVEKQFYLG-GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLG 432
Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
A + ++ L PD++ F VL ACSH GLV++G FE M+ + I P +HY C
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492
Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
MVD+L R+G ++ A L+ MPVEP+ W L AC + + E GELVA L N
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552
Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
SYVLLSN+YA+ W DV VR+ MKER + KIPGCS
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCS 591
>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760
OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
Length = 578
Score = 359 bits (921), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 191/565 (33%), Positives = 314/565 (55%), Gaps = 37/565 (6%)
Query: 43 LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLATPL-SYSTAVFNRIVNPN 100
+++C + QVH+ ++ ++ H + + + +Y + +
Sbjct: 9 FLQRCVVLEQAKQVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHD 68
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
+F W L++ SQ+ +F E +++ + P + V++AC + ++ +G IHA
Sbjct: 69 SFSWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHA 128
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
++ G+ V+V T L+ LY + I A+K FD++ E+N VSW +++ GY G+L E
Sbjct: 129 QALKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDE 188
Query: 221 AKTVFDLMPERSNVSWN-------------------------------ALIGGLVKIGDL 249
A+ VFD +PE+ VSWN LIGG V ++
Sbjct: 189 ARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREM 248
Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
+ AR FD MP++N VS+ TMI GY K+GD+ SA LF +D + + A+I+ Y QNG
Sbjct: 249 KLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNG 308
Query: 310 QPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
+P +A+K+F+ M +N +QPDE L S++SA SQ+GN WV+SY++ + +
Sbjct: 309 KPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDL- 367
Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
+ +L+D+ K G+ +A ++F + +D VSY +MI G I+G +A SLF M+ +
Sbjct: 368 LSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKK 427
Query: 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487
+ P+ V FT +L+A SH GLV++G++ F +M++ + + PS +HY MVD+LGR G L+ A
Sbjct: 428 IPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKD-HNLEPSADHYGIMVDMLGRAGRLEEA 486
Query: 488 YELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547
YEL+ SMP++P+A WGALL A L++++E GE+ + +LE G L+ IY++
Sbjct: 487 YELIKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSV 546
Query: 548 DRWLDVCLVRSKMKERGLRKIPGCS 572
RW D VR +KE+ L K GCS
Sbjct: 547 GRWDDARTVRDSIKEKKLCKTLGCS 571
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 201/628 (32%), Positives = 324/628 (51%), Gaps = 82/628 (13%)
Query: 20 LPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI--- 76
L + + S+P SC+ S L+ I ++ VH+ +IK G + + I
Sbjct: 13 LSSFTDSSPFAKLLDSCIKSKLSAI-------YVRYVHASVIKSGFSNEIFIQNRLIDAY 65
Query: 77 SLCHSLA------------------------TPLSY---STAVFNRIVNPNTFLWNTLLK 109
S C SL T L + + ++F + + WN+++
Sbjct: 66 SKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVS 125
Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE 169
G++Q+ R E F + +E V ++Y+F V+ ACS + + +G +H+ + +
Sbjct: 126 GFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS 185
Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229
DV++G++L+D+Y K ++ A++VFDEM +RNVVSW ++I + G VEA VF +M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 230 E---------------------------------------RSNVSW-NALIGGLVKIGDL 249
E R+++ NA + K +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
+ AR +FD MP RNV++ T+MI GYA +AR +F +R+VV+W+ALI+GY QNG
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH-- 367
+ +EA+ +F + ++V P + +++ AC+ + L L ++ +
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEED 425
Query: 368 ---VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
V +L+DM KCG ++ +F M RD VS+ +MI G + +G+G +A+ LF ML
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485
Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
G PD + VL+AC H G VE+G +F +M + + P +HY CMVDLLGR G L
Sbjct: 486 ESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFL 545
Query: 485 KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544
+ A ++ MP++P + WG+LL ACK++ +I LG+ VA +L E+EP N+G YVLLSN+Y
Sbjct: 546 EEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMY 605
Query: 545 ATADRWLDVCLVRSKMKERGLRKIPGCS 572
A +W DV VR M++ G+ K PGCS
Sbjct: 606 AELGKWEDVMNVRKSMRKEGVTKQPGCS 633
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 351 bits (901), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 178/533 (33%), Positives = 303/533 (56%), Gaps = 36/533 (6%)
Query: 43 LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
+IK+C L + +IK L QD L+ FI+ C S L + + ++ PN F
Sbjct: 34 IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKR-LDLAVSTMTQMQEPNVF 92
Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
++N L KG+ S I ++VR++R+ P YT+ ++KA S + R G ++ A +
Sbjct: 93 VYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFGESLQAHI 150
Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
++G V + T+LID Y ++ G + EA+
Sbjct: 151 WKFGFGFHVKIQTTLIDFY-------------------------------SATGRIREAR 179
Query: 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTS 282
VFD MPER +++W ++ ++ D+ SA L ++M E+N + +I+GY +G++
Sbjct: 180 KVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239
Query: 283 ARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
A SLF P +D+++W+ +I GY+QN + EA+ +F M + + PDE + +++SAC+
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299
Query: 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCS 402
+G L++ V Y ++ L ++ +ALVDM +KCG+++RA +F +P +++ + S
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLD-VYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 358
Query: 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY 462
+I+GL+ HG ++A+ +F +M E + P+ V F V TAC+H GLV++G R + +M + Y
Sbjct: 359 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDY 418
Query: 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522
+IV + EHY MV L + G + A EL+ +M EP+A WGALL C+++ ++ + E+
Sbjct: 419 SIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIA 478
Query: 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI-PGCSSL 574
N+L LEP N+G Y LL ++YA +RW DV +R +M+E G+ KI PG SS+
Sbjct: 479 FNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSI 531
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 184/579 (31%), Positives = 321/579 (55%), Gaps = 54/579 (9%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH-FISLCHSLATPLSYSTAVFNRIVNP 99
++++ CK Q+HS I +G+ + + F+ C L +SY+ +F +I P
Sbjct: 38 ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97
Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI- 158
+ +WN ++KG+S+ E +++ +++E PD +TFP ++ R+G A+
Sbjct: 98 DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLK-----RDGGALA 152
Query: 159 -----HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
H V+++G+ +++V +L+ +Y + AR VFD + +V SW MI GY
Sbjct: 153 CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYN 212
Query: 214 SVGDLVEAKTVFDLMPERSNVS-------------------------------------- 235
+ + E+ + M ER+ VS
Sbjct: 213 RMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271
Query: 236 --WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
NAL+ G++ A ++F M R+V+S+T+++ GY + G++ AR+ F+ P R
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
D ++W+ +I GY + G +E+++IF +M S + PDEF +VS+++AC+ +G+L++ W+
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391
Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
+Y+ ++ + + V AL+DM KCG ++A ++F M RD ++ +M+ GL+ +G G
Sbjct: 392 TYIDKNKIK-NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG 450
Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
++A+ +F +M + PD++ + VL+AC+H G+V+ +FF M++ + I PS HY C
Sbjct: 451 QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510
Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
MVD+LGR G +K AYE+L MP+ P++ WGALLGA +L++D + EL A ++ ELEP N
Sbjct: 511 MVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDN 570
Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
Y LL NIYA RW D+ VR K+ + ++K PG S
Sbjct: 571 GAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 190/529 (35%), Positives = 298/529 (56%), Gaps = 34/529 (6%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
++LI CK L VH+ I+++G+ S VA + C SL YS ++F N
Sbjct: 33 ISLIHACKDTASLRHVHAQILRRGVLS--SRVAAQLVSCSSLLKSPDYSLSIFRNSEERN 90
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
F+ N L++G ++N+RF F+ ++R PD+ TFP V+K+ S + G A+HA
Sbjct: 91 PFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHA 150
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
A ++ VD D FV SL+D+Y K ++ A +VF+E P+R
Sbjct: 151 ATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDR-------------------- 190
Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
+ + S + WN LI G + D+ A LF MPERN S++T+I GY G++
Sbjct: 191 -------IKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGEL 243
Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
A+ LFE P+++VV+W+ LI+G++Q G + A+ + +M K ++P+E+ + +++SAC
Sbjct: 244 NRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303
Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
S+ G L + Y+ + + L RA + ALVDM AKCG +D AA +F M ++D++S+
Sbjct: 304 SKSGALGSGIRIHGYILDNGIKLDRA-IGTALVDMYAKCGELDCAATVFSNMNHKDILSW 362
Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
+MI+G ++HG QA+ F +M+ G PDEV F VLTAC + V+ G FF++M+
Sbjct: 363 TAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRL 422
Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
YAI P+ +HY +VDLLGR G L A+EL+ +MP+ P + W AL ACK + E
Sbjct: 423 DYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAE 482
Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDV----CLVRSKMKERGL 565
V+ L EL+P+ GSY+ L +A+ DV ++ ++KER L
Sbjct: 483 SVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSL 531
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 112/274 (40%), Gaps = 37/274 (13%)
Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
+ PDE +SL+ AC +L V + + R + SR V A LV ++ + D
Sbjct: 23 RQASPDESHFISLIHACKDTASL---RHVHAQILRRGVLSSR--VAAQLVSCSSLLKSPD 77
Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
+ +F R+ ++I+GL+ + +V F ML G+ PD + F VL + S
Sbjct: 78 YSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNS 137
Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA- 502
+G G A + S + +VD+ +TG LK A+++ P +
Sbjct: 138 KLGFRWLGRALHAATLKNFVDCDSFVRLS-LVDMYAKTGQLKHAFQVFEESPDRIKKESI 196
Query: 503 --WGALL-GACK-------------------------LYSDIELGEL-VANRLFELEPQ- 532
W L+ G C+ + ++ GEL A +LFEL P+
Sbjct: 197 LIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEK 256
Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
N S+ L N ++ + +M E+GL+
Sbjct: 257 NVVSWTTLINGFSQTGDYETAISTYFEMLEKGLK 290
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/547 (34%), Positives = 311/547 (56%), Gaps = 17/547 (3%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--N 98
LT++ + K H QVH+ +I G E D ++ ++ + + L ++T+ FNRI
Sbjct: 11 LTILSQAKTLNHTQQVHAKVIIHGFE-DEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69
Query: 99 PNTFLWNTLLKGYSQNSR--FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
N WNT+L GYS++ + +V ++ R+ R D + IKAC + + G
Sbjct: 70 RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129
Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
IH ++ G+D+D +V SL+++Y + + A+KVFDE+P RN V W ++ GY
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189
Query: 217 DLVEAKTVFDLMPERSNVSWNALI--------GGLV--KIGDLRSARQLFDEMPERNVVS 266
E +F LM + + ++ +AL G + K+G + +++
Sbjct: 190 KDPEVFRLFCLMRD-TGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248
Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
++ID Y K + +AR LFE + DR+VV W+ LISG+A+ + EA +F M +++
Sbjct: 249 QASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI 308
Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
P++ L +++ +CS +G+L V Y+ R+ +++ + + +DM A+CGN+ A
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVN-FTSFIDMYARCGNIQMAR 367
Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
+F+ MP R+V+S+ SMI I+G +A+ F +M S+ + P+ V F +L+ACSH G
Sbjct: 368 TVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSG 427
Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
V++GW+ FE+M Y +VP EHYACMVDLLGR G + A +++MPV+P ASAWGAL
Sbjct: 428 NVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487
Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
L AC+++ +++L +A +L +EP+ + YVLLSNIYA A W V VR KM +G R
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYR 547
Query: 567 KIPGCSS 573
K G S+
Sbjct: 548 KHVGQSA 554
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 180/518 (34%), Positives = 291/518 (56%), Gaps = 43/518 (8%)
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
P+ ++N +LK + F +V +F L + PD +T P+V+K+ + V EG +
Sbjct: 9 PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H ++ G++ D +V SL+ +Y +I KVFDEMP+R+VVSW +I Y G
Sbjct: 69 HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRF 128
Query: 219 VEAKTVFDLMPERSNVSW---------------------------------------NAL 239
+A VF M + SN+ + NAL
Sbjct: 129 EDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNAL 188
Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
+ K G L AR +FD M ++NV +T+M+ GY G + AR LFE +P +DVV W+
Sbjct: 189 VDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWT 248
Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
A+++GY Q + DEA+++F M + ++PD F+LVSL++ C+Q G L+ W+ Y++ +
Sbjct: 249 AMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINEN 308
Query: 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL 419
+ + + V ALVDM AKCG ++ A E+F + RD S+ S+I GL+++G +A+ L
Sbjct: 309 RVTVDKV-VGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDL 367
Query: 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479
+ M + G+ D + F VLTAC+H G V +G + F +M + + P EH +C++DLL
Sbjct: 368 YYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLC 427
Query: 480 RTGHLKSAYELLNSMPVEPHAS---AWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536
R G L A EL++ M E + + +LL A + Y ++++ E VA +L ++E ++ +
Sbjct: 428 RAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSA 487
Query: 537 YVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
+ LL+++YA+A+RW DV VR KMK+ G+RK PGCSS+
Sbjct: 488 HTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 198/440 (45%), Gaps = 50/440 (11%)
Query: 28 PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
P NF P L S I + + +VH + +K GLE D + + + SL +
Sbjct: 44 PDNFTLPVVLKS----IGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLG-KIE 98
Query: 88 YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKAC 146
+ VF+ + + WN L+ Y N RF + +F R+ +E + D+ T + AC
Sbjct: 99 ITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSAC 158
Query: 147 SHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWT 206
S + ++ G I+ V+ + V +G +L+D++ K + AR VFD M ++NV WT
Sbjct: 159 SALKNLEIGERIYRFVVT-EFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWT 217
Query: 207 AMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV-- 264
+M+ GY S G + EA+ +F+ P + V W A++ G V+ A +LF M +
Sbjct: 218 SMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRP 277
Query: 265 -------------------------------------VSYTTMIDGYAKVGDMTSARSLF 287
V T ++D YAK G + +A +F
Sbjct: 278 DNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVF 337
Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
+RD +W++LI G A NG A+ ++ +M + V+ D V++++AC+ G +
Sbjct: 338 YEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVA 397
Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD----VVSYCSM 403
+ ++ H ++ + L+D+ + G +D A EL + M V YCS+
Sbjct: 398 EGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSL 457
Query: 404 IKGLSIHGHGRQAVSLFDRM 423
+ +G+ + A + +++
Sbjct: 458 LSAARNYGNVKIAERVAEKL 477
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 32/287 (11%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
+F R + LW ++ GY Q +RF E +F + PD + ++ C+ +
Sbjct: 235 LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGA 294
Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
+ +G IH + V D VGT+L+D+Y K I A +VF E+ ER+ SWT++I G
Sbjct: 295 LEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYG 354
Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
A G + DL E NV V++ + +++ ++
Sbjct: 355 LAMNG---MSGRALDLYYEMENVG--------VRL----------------DAITFVAVL 387
Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVA-----WSALISGYAQNGQPDEAVKIFSDMCSKNV 326
G + R +F + +R V S LI + G DEA ++ M ++
Sbjct: 388 TACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESD 447
Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
+ + SL+SA GN+ ++ V L + + S AH + A V
Sbjct: 448 ETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASV 494
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 215/649 (33%), Positives = 320/649 (49%), Gaps = 112/649 (17%)
Query: 34 PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
P L S L L K +V + I G D +L + +SL ++ L ++ VF
Sbjct: 94 PRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSK-LSLMYTNCGDLKEASRVF 152
Query: 94 NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVR 153
+ + WN L+ +++ F +F +++ D YTF V K+ S + SV
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
G +H +++ G E VG SL+ Y K + + ARKVFDEM ER+V+SW ++I GY
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272
Query: 214 SVG-------------------DLVEAKTVFDLMPE--------------------RSNV 234
S G DL +VF + R +
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332
Query: 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA----- 289
N L+ K GDL SA+ +F EM +R+VVSYT+MI GYA+ G A LFE
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 290 -APD---------------------------------RDVVAWSALISGYAQNGQPDEAV 315
+PD D+ +AL+ YA+ G EA
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 316 KIFSDMCSKNV--------------------------------QPDEFILVSLMSACSQV 343
+FS+M K++ PDE + ++ AC+ +
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512
Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
D + Y+ R+ S HV +LVDM AKCG + A LF+ + ++D+VS+ M
Sbjct: 513 SAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571
Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
I G +HG G++A++LF++M G+ DE++F +L ACSH GLV++GWRFF M++
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631
Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
I P+ EHYAC+VD+L RTG L AY + +MP+ P A+ WGALL C+++ D++L E VA
Sbjct: 632 IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVA 691
Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
++FELEP+N G YVL++NIYA A++W V +R ++ +RGLRK PGCS
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 176/418 (42%), Gaps = 81/418 (19%)
Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
D T V++ C+ S+++G + + G D +G+ L +Y ++ A +VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM-------------------------- 228
DE+ + W ++ A GD + +F M
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 229 --------------PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGY 274
ER++V N+L+ +K + SAR++FDEM ER+V+S+ ++I+
Sbjct: 213 GGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN-- 269
Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
GY NG ++ + +F M ++ D +V
Sbjct: 270 -----------------------------GYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300
Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
S+ + C+ + L V S ++ L+DM +KCG++D A +F M +
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFS-REDRFCNTLLDMYSKCGDLDSAKAVFREMSD 359
Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
R VVSY SMI G + G +AV LF+ M EG++PD T VL C+ L+++G R
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 455 FEAMQN---VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
E ++ + I S ++D+ + G ++ A + + M V+ S W ++G
Sbjct: 420 HEWIKENDLGFDIFVSN----ALMDMYAKCGSMQEAELVFSEMRVKDIIS-WNTIIGG 472
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 221/683 (32%), Positives = 333/683 (48%), Gaps = 125/683 (18%)
Query: 1 MPKIDEPNTPCKHKSCSSMLPNCSRSAPIN-FPKPSCLLSALTLIKKCKLQTHLHQVHSH 59
+P+I PN P +H+ S P N + P+ LL +++C L Q+
Sbjct: 11 VPQI--PNPPSRHRHFLSE----RNYIPANVYEHPAALL-----LERCSSLKELRQILPL 59
Query: 60 IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIE 119
+ K GL Q+H +SL + + + VF I + L++T+LKG+++ S +
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGS-VDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118
Query: 120 VFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179
FVR+ ++ P Y F ++K C +R G IH +++ G D+F T L +
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178
Query: 180 LYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG------DLVEAK----------T 223
+Y K ++++ ARKVFD MPER++VSW ++ GY+ G ++V++ T
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238
Query: 224 VFDLMPERS------------------------NVSWNALIGGLVKIGDLRSARQLFDEM 259
+ ++P S N+S AL+ K G L +ARQLFD M
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS-TALVDMYAKCGSLETARQLFDGM 297
Query: 260 PERNVVSYTTMIDGY-----------------------------------AKVGDMTSAR 284
ERNVVS+ +MID Y A +GD+ R
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357
Query: 285 SL----FEAAPDRDVVAWSALIS-------------------------------GYAQNG 309
+ E DR+V ++LIS G+AQNG
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417
Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
+P +A+ FS M S+ V+PD F VS+++A +++ + W+ + RS +D V
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLD-KNVFVT 476
Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429
ALVDM AKCG + A +F+ M R V ++ +MI G HG G+ A+ LF+ M +
Sbjct: 477 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 536
Query: 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489
P+ V F V++ACSH GLVE G + F M+ Y+I S +HY MVDLLGR G L A++
Sbjct: 537 PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWD 596
Query: 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549
+ MPV+P + +GA+LGAC+++ ++ E A RLFEL P + G +VLL+NIY A
Sbjct: 597 FIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASM 656
Query: 550 WLDVCLVRSKMKERGLRKIPGCS 572
W V VR M +GLRK PGCS
Sbjct: 657 WEKVGQVRVSMLRQGLRKTPGCS 679
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 289/482 (59%), Gaps = 10/482 (2%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
VF+ + N W L+KGY N + ++F ++ + +K ++ +++
Sbjct: 101 VFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDGR 156
Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
+ + ++ + D+D TS+I K + AR++FDEM ER+V++WT M+ G
Sbjct: 157 IDDACKLYEMI----PDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTG 212
Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
Y + +A+ +FD+MPE++ VSW +++ G V+ G + A +LF+ MP + V++ MI
Sbjct: 213 YGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMI 272
Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
G + G++ AR +F++ +R+ +W +I + +NG EA+ +F M + V+P
Sbjct: 273 SGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFP 332
Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
L+S++S C+ + +L V + L R D+ +V + L+ M KCG + ++ +F+
Sbjct: 333 TLISILSVCASLASLHHGKQVHAQLVRCQFDVD-VYVASVLMTMYIKCGELVKSKLIFDR 391
Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM-LSEGLTPDEVAFTIVLTACSHVGLVED 450
P++D++ + S+I G + HG G +A+ +F M LS P+EV F L+ACS+ G+VE+
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEE 451
Query: 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGAC 510
G + +E+M++V+ + P HYACMVD+LGR G A E+++SM VEP A+ WG+LLGAC
Sbjct: 452 GLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGAC 511
Query: 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
+ +S +++ E A +L E+EP+N+G+Y+LLSN+YA+ RW DV +R MK R +RK PG
Sbjct: 512 RTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPG 571
Query: 571 CS 572
CS
Sbjct: 572 CS 573
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 137/234 (58%), Gaps = 9/234 (3%)
Query: 190 ARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDL 249
ARK+FDEMP+RN++SW ++ GY G++ EA+ VFDLMPER+ VSW AL+ G V G +
Sbjct: 67 ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126
Query: 250 RSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309
A LF +MPE+N VS+T M+ G+ + G + A L+E PD+D +A +++I G + G
Sbjct: 127 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEG 186
Query: 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369
+ DEA +IF +M ++V ++++ Q +D + + + ++S ++
Sbjct: 187 RVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSML 241
Query: 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
V + G ++ A ELFE MP + V++ +MI GL G +A +FD M
Sbjct: 242 MGYV----QNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSM 291
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 152/284 (53%), Gaps = 9/284 (3%)
Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
D ++ L+ Y K EI ARKVFD MPERNVVSWTA++ GY G + A+++F
Sbjct: 76 DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135
Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
MPE++ VSW ++ G ++ G + A +L++ +P+++ ++ T+MI G K G + AR +F
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIF 195
Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
+ +R V+ W+ +++GY QN + D+A KIF M K E S++ Q G ++
Sbjct: 196 DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKT----EVSWTSMLMGYVQNGRIE 251
Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
D+ M + A++ + G + +A +F++M R+ S+ ++IK
Sbjct: 252 -----DAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIH 306
Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
+G +A+ LF M +G+ P +L+ C+ + + G
Sbjct: 307 ERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 162/324 (50%), Gaps = 54/324 (16%)
Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
+I ARK+FD +++ SW +M+ GY + +A+ +FD MP+R+ +SWN L+ G +K
Sbjct: 32 KIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMK 91
Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
G++ AR++FD MPERNVVS+T ++ GY G + A SLF P+++ V+W+ ++ G+
Sbjct: 92 NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGF 151
Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
Q+G+ D+A K++ + K+ +++R
Sbjct: 152 LQDGRIDDACKLYEMIPDKD------------------------------------NIAR 175
Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
+I L K G +D A E+F+ M R V+++ +M+ G + A +FD M
Sbjct: 176 TSMIHGL----CKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE 231
Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC--MVDLLGRTGH 483
+ EV++T +L G +ED FE M P AC M+ LG+ G
Sbjct: 232 K----TEVSWTSMLMGYVQNGRIEDAEELFEVM-------PVKPVIACNAMISGLGQKGE 280
Query: 484 LKSAYELLNSMPVEPHASAWGALL 507
+ A + +SM E + ++W ++
Sbjct: 281 IAKARRVFDSMK-ERNDASWQTVI 303
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 30/334 (8%)
Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
N I L +IG + AR+LFD +++ S+ +M+ GY AR LF+ PDR+++
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80
Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
+W+ L+SGY +NG+ DEA K+F M +NV +L+ G +D++ + +
Sbjct: 81 SWNGLVSGYMKNGEIDEARKVFDLMPERNVVS----WTALVKGYVHNGKVDVAESLFWKM 136
Query: 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416
+ +I L D G +D A +L+E +P++D ++ SMI GL G +A
Sbjct: 137 PEKNKVSWTVMLIGFLQD-----GRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEA 191
Query: 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
+FD M + + +T ++T V+D + F+ M P +
Sbjct: 192 REIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVM-------PEKTEVSWTSM 240
Query: 477 LLG--RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV-ANRLFE-LEPQ 532
L+G + G ++ A EL MPV+P A A++ + GE+ A R+F+ ++ +
Sbjct: 241 LMGYVQNGRIEDAEELFEVMPVKP-VIACNAMISGLG-----QKGEIAKARRVFDSMKER 294
Query: 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
N S+ + I+ L+ + M+++G+R
Sbjct: 295 NDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Query: 32 PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
P L+S L++ H QVH+ +++ + D VA + + L S
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVD-VYVASVLMTMYIKCGELVKSKL 387
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRL-IREEAVPDKYTFPLVIKACSHVL 150
+F+R + + +WN+++ GY+ + E +F + + P++ TF + ACS+
Sbjct: 388 IFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447
Query: 151 SVREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP-ERNVVSWTAM 208
V EG I+ ++ +GV ++D+ G+ + A ++ D M E + W ++
Sbjct: 448 MVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSL 507
Query: 209 IVG--YASVGDLVE--AKTVFDLMPERS 232
+ S D+ E AK + ++ PE S
Sbjct: 508 LGACRTHSQLDVAEFCAKKLIEIEPENS 535
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 340 bits (873), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/483 (36%), Positives = 271/483 (56%), Gaps = 42/483 (8%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQN-SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
VF+ + NT WN+LL G S++ SR +E +F + +P+ TF I
Sbjct: 83 VFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF------DEIPEPDTFSYNI------- 129
Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
++ Y + A+ FD MP ++ SW MI
Sbjct: 130 --------------------------MLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMIT 163
Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
GYA G++ +A+ +F M E++ VSWNA+I G ++ GDL A F P R VV++T M
Sbjct: 164 GYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAM 223
Query: 271 IDGYAKVGDMTSARSLF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
I GY K + A ++F + ++++V W+A+ISGY +N +P++ +K+F M + ++P+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
L S + CS++ L L + +S+S + + + +L+ M KCG + A +LF
Sbjct: 284 SSGLSSALLGCSELSALQLGRQIHQIVSKSTL-CNDVTALTSLISMYCKCGELGDAWKLF 342
Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
E M +DVV++ +MI G + HG+ +A+ LF M+ + PD + F VL AC+H GLV
Sbjct: 343 EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN 402
Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
G +FE+M Y + P P+HY CMVDLLGR G L+ A +L+ SMP PHA+ +G LLGA
Sbjct: 403 IGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGA 462
Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
C+++ ++EL E A +L +L QNA YV L+NIYA+ +RW DV VR +MKE + K+P
Sbjct: 463 CRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVP 522
Query: 570 GCS 572
G S
Sbjct: 523 GYS 525
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 156/331 (47%), Gaps = 27/331 (8%)
Query: 79 CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP---- 134
C+ + + F+R+ + WNT++ GY++ + +F ++ + V
Sbjct: 133 CYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAM 192
Query: 135 -DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
Y ++ SH V A V+ W T++I Y K K++ A +
Sbjct: 193 ISGYIECGDLEKASHFFKV----APVRGVVAW---------TAMITGYMKAKKVELAEAM 239
Query: 194 FDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSNVS-WNALIGGLVKIGD 248
F +M +N+V+W AMI GY + +F M E R N S ++ + G ++
Sbjct: 240 FKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSA 299
Query: 249 LRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISG 304
L+ RQ+ + + +V + T++I Y K G++ A LFE +DVVAW+A+ISG
Sbjct: 300 LQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 359
Query: 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364
YAQ+G D+A+ +F +M ++PD V+++ AC+ G +++ + R +
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419
Query: 365 RAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
+ +VD+ + G ++ A +L +MP R
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 155/345 (44%), Gaps = 45/345 (13%)
Query: 168 DED-VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS-VGDLVEAKTVF 225
D+D +F +I + +I A +VF M +N ++W ++++G + ++EA +F
Sbjct: 57 DQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116
Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
D +PE S+N ++ V+ + A+ FD MP ++ S+ TMI GYA+ G+M AR
Sbjct: 117 DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176
Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
LF + +++ V+W+A+ISGY + G ++A F V P ++
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFK------VAPVRGVVA----------- 219
Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMI 404
W A++ K ++ A +F+ M N+++V++ +MI
Sbjct: 220 -----WT------------------AMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMI 256
Query: 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464
G + + LF ML EG+ P+ + L CS + ++ G R + + +
Sbjct: 257 SGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLG-RQIHQIVSKSTL 315
Query: 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
++ + + G L A++L M + AW A++
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISG 359
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 26/257 (10%)
Query: 32 PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
P S L SAL + Q+H + K L D + + IS+ + L +
Sbjct: 282 PNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISM-YCKCGELGDAWK 340
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
+F + + WN ++ GY+Q+ + +F +I + PD TF V+ AC+H
Sbjct: 341 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400
Query: 152 VREGTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
V G A +++R + V+ T ++DL G+ ++ A K+ MP R + ++
Sbjct: 401 VNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLL 460
Query: 211 GYASVGDLVE-----AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE------- 258
G V VE A+ + L + + G V++ ++ +++ +++
Sbjct: 461 GACRVHKNVELAEFAAEKLLQLNSQNA--------AGYVQLANIYASKNRWEDVARVRKR 512
Query: 259 MPERNVVSYTTMIDGYA 275
M E NVV + GY+
Sbjct: 513 MKESNVVK----VPGYS 525
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 187/596 (31%), Positives = 308/596 (51%), Gaps = 80/596 (13%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
Q H+ I+K G + D + A I+ +S + + V I +P + +++L+ ++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIA-SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
F + +F R+ +PD + P + K C+ + + + G IH G+D D FV
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----E 230
S+ +Y + + ARKVFD M +++VV+ +A++ YA G L E + M E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 231 RSNVSWNALIGGLVKIGDLRSARQLFDEM------PERNVVS------------------ 266
+ VSWN ++ G + G + A +F ++ P++ VS
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 267 ---------------YTTMIDGYAKVGDMTSARSLF------------------------ 287
+ MID Y K G + SLF
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 288 -----------EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
E + +VV+W+++I+G AQNG+ EA+++F +M V+P+ + S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
+ AC + L + R H+ L HV +AL+DM AKCG ++ + +F MP ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453
Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
+V + S++ G S+HG ++ +S+F+ ++ L PD ++FT +L+AC VGL ++GW++F+
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513
Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
M Y I P EHY+CMV+LLGR G L+ AY+L+ MP EP + WGALL +C+L +++
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573
Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+L E+ A +LF LEP+N G+YVLLSNIYA W +V +R+KM+ GL+K PGCS
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 337 bits (864), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/487 (38%), Positives = 283/487 (58%), Gaps = 43/487 (8%)
Query: 128 IREEAVPDKYTFPLVIKACSHVL-SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186
IR V PL+++AC+ V+ V G +H+ I++GV DV VG+SLI +YGK
Sbjct: 37 IRRRGVYFPGWVPLILRACACVVPRVVLGKLLHSESIKFGVCSDVMVGSSLISMYGKCGC 96
Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLV--------------------------- 219
+ ARKVFDEMPERNV +W AMI GY S GD V
Sbjct: 97 VVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGK 156
Query: 220 -----EAKTVFDLMP-ERSNV-SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
+A+ +F+ MP E NV +W+ ++G V + AR+ F+++PE+N ++ M+
Sbjct: 157 RIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMS 216
Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
GY ++GD+ AR++F RD+V W+ LI+GYAQNG D+A+ F +M + +PD
Sbjct: 217 GYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVT 276
Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
+ S++SAC+Q G LD+ V S ++ ++L++ V AL+DM AKCG+++ A +FE++
Sbjct: 277 VSSILSACAQSGRLDVGREVHSLINHRGIELNQ-FVSNALIDMYAKCGDLENATSVFESI 335
Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
R V SMI L+IHG G++A+ +F M S L PDE+ F VLTAC H G + +G
Sbjct: 336 SVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGL 395
Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
+ F M+ + P+ +H+ C++ LLGR+G LK AY L+ M V+P+ + GALLGACK+
Sbjct: 396 KIFSEMKT-QDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKV 454
Query: 513 YSDIELGELVANRLFELEPQNAGSY-----VLLSNIYATADRWLDVCLVRSKMKERGLRK 567
+ D E+ E V ++ E SY +SN+YA +RW +R +M++RGL K
Sbjct: 455 HMDTEMAEQVM-KIIETAGSITNSYSENHLASISNLYAHTERWQTAEALRVEMEKRGLEK 513
Query: 568 IPGCSSL 574
PG SSL
Sbjct: 514 SPGLSSL 520
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 38/258 (14%)
Query: 89 STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
+ A+F R+ + +WNTL+ GY+QN + F + E PD T ++ AC+
Sbjct: 227 ARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQ 286
Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
+ G +H+ + G++ + FV +LID+Y K ++ A VF+ + R+V +M
Sbjct: 287 SGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSM 346
Query: 209 IVGYASVGDLVEAKTVF------DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262
I A G EA +F DL P+ +++ A++ V G L ++F EM +
Sbjct: 347 ISCLAIHGKGKEALEMFSTMESLDLKPDE--ITFIAVLTACVHGGFLMEGLKIFSEMKTQ 404
Query: 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322
+V +V + LI ++G+ EA ++ +M
Sbjct: 405 DV---------------------------KPNVKHFGCLIHLLGRSGKLKEAYRLVKEM- 436
Query: 323 SKNVQPDEFILVSLMSAC 340
+V+P++ +L +L+ AC
Sbjct: 437 --HVKPNDTVLGALLGAC 452
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
+VHS I +G+E + + I + ++ L +T+VF I + N+++ + +
Sbjct: 295 EVHSLINHRGIELNQFVSNALIDM-YAKCGDLENATSVFESISVRSVACCNSMISCLAIH 353
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
+ E +F + + PD+ TF V+ AC H + EG I + + V +V
Sbjct: 354 GKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHF 413
Query: 175 TSLIDLYGKRKEISCARKVFDEM 197
LI L G+ ++ A ++ EM
Sbjct: 414 GCLIHLLGRSGKLKEAYRLVKEM 436
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/580 (33%), Positives = 317/580 (54%), Gaps = 51/580 (8%)
Query: 40 ALTLIKKCKLQTHLHQVHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNR 95
L+ K + + + Q+H I+K G +D +SLV HF + C L + + VF+
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV-HFYAECGELDS----ARKVFDE 194
Query: 96 IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVRE 154
+ N W +++ GY++ + +F R++R EE P+ T VI AC+ + +
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
G ++A + G++ + + ++L+D+Y K I A+++FDE N+ AM Y
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 215 VGDLVEAKTVFDLM------PER-------------SNVSW------------------- 236
G EA VF+LM P+R N+ W
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 237 -NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
NALI +K +A ++FD M + VV++ +++ GY + G++ +A FE P++++
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
V+W+ +ISG Q +EA+++F M S+ V D ++S+ SAC +G LDL+ W+
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494
Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
Y+ ++ + L + LVDM ++CG+ + A +F ++ NRDV ++ + I +++ G+
Sbjct: 495 YIEKNGIQLD-VRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAE 553
Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
+A+ LFD M+ +GL PD VAF LTACSH GLV+ G F +M ++ + P HY CM
Sbjct: 554 RAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCM 613
Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
VDLLGR G L+ A +L+ MP+EP+ W +LL AC++ ++E+ A ++ L P+
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERT 673
Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
GSYVLLSN+YA+A RW D+ VR MKE+GLRK PG SS+
Sbjct: 674 GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/530 (28%), Positives = 254/530 (47%), Gaps = 49/530 (9%)
Query: 19 MLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL 78
+L + + P + C + + +K CK L H + K+GL+ D S + ++
Sbjct: 14 VLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVAR 73
Query: 79 CHSLAT--PLSYSTAVFNRIVNPNT-FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD 135
L T LS++ VF + T F++N+L++GY+ + E +F+R++ PD
Sbjct: 74 SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133
Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
KYTFP + AC+ + G IH +++ G +D+FV SL+ Y + E+ ARKVFD
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193
Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNA-----LIGGLVKIGDLR 250
EM ERNVVSWT+MI GYA +A +F M V+ N+ +I K+ DL
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253
Query: 251 SARQLF----DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
+ +++ + E N + + ++D Y K + A+ LF+ ++ +A+ S Y
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYV 313
Query: 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366
+ G EA+ +F+ M V+PD ++S +S+CSQ+ N+ Y+ R+ + S
Sbjct: 314 RQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE-SWD 372
Query: 367 HVIAALVDMNAKC-------------------------------GNMDRAAELFETMPNR 395
++ AL+DM KC G +D A E FETMP +
Sbjct: 373 NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK 432
Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-EGLTPDEVAFTIVLTACSHVGLVE-DGWR 453
++VS+ ++I GL +A+ +F M S EG+ D V + +AC H+G ++ W
Sbjct: 433 NIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWI 492
Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
++ +N I +VD+ R G +SA + NS+ SAW
Sbjct: 493 YYYIEKN--GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSL-TNRDVSAW 539
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 274/481 (56%), Gaps = 9/481 (1%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
VF + N W ++KGY Q E ++F R+ V F +I +
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD-GRIDK 159
Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
R+ + +DV T++I + + AR +FDEM ERNVV+WT MI G
Sbjct: 160 ARKLYDMMPV-------KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITG 212
Query: 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI 271
Y + A+ +F++MPE++ VSW +++ G G + A + F+ MP + V++ MI
Sbjct: 213 YRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMI 272
Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
G+ +VG+++ AR +F+ DRD W +I Y + G EA+ +F+ M + V+P
Sbjct: 273 VGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFP 332
Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
L+S++S C+ + +L V ++L R D +V + L+ M KCG + +A +F+
Sbjct: 333 SLISILSVCATLASLQYGRQVHAHLVRCQFD-DDVYVASVLMTMYVKCGELVKAKLVFDR 391
Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
++D++ + S+I G + HG G +A+ +F M S G P++V +LTACS+ G +E+G
Sbjct: 392 FSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG 451
Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
FE+M++ + + P+ EHY+C VD+LGR G + A EL+ SM ++P A+ WGALLGACK
Sbjct: 452 LEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACK 511
Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
+S ++L E+ A +LFE EP NAG+YVLLS+I A+ +W DV +VR M+ + K PGC
Sbjct: 512 THSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGC 571
Query: 572 S 572
S
Sbjct: 572 S 572
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 153/284 (53%), Gaps = 9/284 (3%)
Query: 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227
+ +V L+ Y K + I AR VF+ MPERNVVSWTAM+ GY G + EA+++F
Sbjct: 76 ERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWR 135
Query: 228 MPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
MPER+ VSW + GGL+ G + AR+L+D MP ++VV+ T MI G + G + AR +F
Sbjct: 136 MPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIF 195
Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
+ +R+VV W+ +I+GY QN + D A K+F M K E S++ + G ++
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSGRIE 251
Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGL 407
D+ M + A++ + G + +A +F+ M +RD ++ MIK
Sbjct: 252 -----DAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAY 306
Query: 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
G +A+ LF +M +G+ P + +L+ C+ + ++ G
Sbjct: 307 ERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 165/343 (48%), Gaps = 27/343 (7%)
Query: 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK 245
+I+ ARK FD + + + SW +++ GY S G EA+ +FD M ER+ VSWN L+ G +K
Sbjct: 32 KINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIK 91
Query: 246 IGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY 305
+ AR +F+ MPERNVVS+T M+ GY + G + A SLF P+R+ V+W+ + G
Sbjct: 92 NRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGL 151
Query: 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
+G+ D+A K++ M K+V +++ + +G L VD +R D R
Sbjct: 152 IDDGRIDKARKLYDMMPVKDV----------VASTNMIGGLCREGRVDE--ARLIFDEMR 199
Query: 366 AHVIAALVDM---NAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
+ M + +D A +LFE MP + VS+ SM+ G ++ G A F+
Sbjct: 200 ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEV 259
Query: 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482
M + + +A ++ VG + R F+ M++ + M+ R G
Sbjct: 260 MPMKPV----IACNAMIVGFGEVGEISKARRVFDLMED-----RDNATWRGMIKAYERKG 310
Query: 483 HLKSAYELLNSMP---VEPHASAWGALLGACKLYSDIELGELV 522
A +L M V P + ++L C + ++ G V
Sbjct: 311 FELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQV 353
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 169/358 (47%), Gaps = 61/358 (17%)
Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
+ +G + EA+ FD + ++ SWN+++ G G + ARQLFDEM ERNVVS+ ++
Sbjct: 28 SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87
Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
GY K + AR++FE P+R+VV+W+A++ GY Q G EA +F M +N
Sbjct: 88 GYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERN------- 140
Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
++S + L+D G +D+A +L++ M
Sbjct: 141 -----------------------------EVSWTVMFGGLID----DGRIDKARKLYDMM 167
Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
P +DVV+ +MI GL G +A +FD M + V +T ++T V+
Sbjct: 168 PVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVAR 223
Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRT--GHLKSAYELLNSMPVEPHASAWGALLGAC 510
+ FE M P + LLG T G ++ A E MP++P + ++G
Sbjct: 224 KLFEVM-------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFG 276
Query: 511 KLYSDIELGELV-ANRLFEL-EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
E+GE+ A R+F+L E ++ ++ + Y L+ + ++M+++G+R
Sbjct: 277 ------EVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVR 328
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 86 LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
+S + VF+ + + + W ++K Y + +E +F ++ ++ P + ++
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340
Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
C+ + S++ G +HA ++R D+DV+V + L+ +Y K E+ A+ VFD ++++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400
Query: 206 TAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
++I GYAS G EA +F MP + V+ A++ G L ++F+ M
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMES 460
Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM 321
+ V+ T ++ Y+ DM + GQ D+A+++ M
Sbjct: 461 KFCVTPT--VEHYSCTVDM------------------------LGRAGQVDKAMELIESM 494
Query: 322 CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381
++PD + +L+ AC LDL+ L + D + +V+ L +NA
Sbjct: 495 ---TIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVL--LSSINASRSK 549
Query: 382 MDRAAELFETMPNRDVVSY--CSMIK-GLSIH--------GHGRQAVSLF-----DRMLS 425
A + + M +V + CS I+ G +H H QA+ L D +L
Sbjct: 550 WGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLR 609
Query: 426 E-GLTPDEVAFTIVLTACSHV 445
E G +PD CSHV
Sbjct: 610 EAGYSPD----------CSHV 620
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 95/207 (45%), Gaps = 7/207 (3%)
Query: 32 PKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA 91
P L+S L++ + QVH+H+++ + D VA + + L +
Sbjct: 329 PSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDD-VYVASVLMTMYVKCGELVKAKL 387
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
VF+R + + +WN+++ GY+ + E IF + +P+K T ++ ACS+
Sbjct: 388 VFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGK 447
Query: 152 VREGTAIHAAV-IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-NVVSWTAMI 209
+ EG I ++ ++ V V + +D+ G+ ++ A ++ + M + + W A++
Sbjct: 448 LEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALL 507
Query: 210 VGYASVGDL----VEAKTVFDLMPERS 232
+ L V AK +F+ P+ +
Sbjct: 508 GACKTHSRLDLAEVAAKKLFENEPDNA 534
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 336 bits (861), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 184/579 (31%), Positives = 314/579 (54%), Gaps = 52/579 (8%)
Query: 42 TLIK---KCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN 98
TLIK + K ++ Q+H+ I+ H+ + IS+ ++ L + +F + +
Sbjct: 10 TLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISI-YTNLKLLHEALLLFKTLKS 67
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
P W ++++ ++ S F + FV + PD FP V+K+C+ ++ +R G ++
Sbjct: 68 PPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGK----RKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
H ++R G+D D++ G +L+++Y K +IS VFDEMP+R S +
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVG-NVFDEMPQRTSNSGDEDVKAETC 186
Query: 215 VG--DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP------------ 260
+ + + VF++MP + VS+N +I G + G A ++ EM
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 261 ---------------------------ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
+ +V ++++D YAK + + +F R
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306
Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353
D ++W++L++GY QNG+ +EA+++F M + V+P S++ AC+ + L L +
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366
Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHG 413
Y+ R S + +ALVDM +KCGN+ A ++F+ M D VS+ ++I G ++HGHG
Sbjct: 367 GYVLRGGFG-SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHG 425
Query: 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473
+AVSLF+ M +G+ P++VAF VLTACSHVGLV++ W +F +M VY + EHYA
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485
Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
+ DLLGR G L+ AY ++ M VEP S W LL +C ++ ++EL E VA ++F ++ +N
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545
Query: 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
G+YVL+ N+YA+ RW ++ +R +M+++GLRK P CS
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACS 584
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 42/247 (17%)
Query: 235 SWNALIGGLVK----IGDLRSARQLFDEMPERNVVSYTT---MIDGYAKVGDMTSARSLF 287
S ALI L+K I A+QL + +S+T+ +I Y + + A LF
Sbjct: 3 SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLF 62
Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
+ V+AW ++I + +A+ F +M + PD + S++ +C+ + +L
Sbjct: 63 KTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR 122
Query: 348 LSNWVDSYLSRSHMD----------------------LSRAHVIAALVDMNAKCGNMDRA 385
V ++ R MD +S +V + + G+ D
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK 182
Query: 386 AE-------------LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
AE +FE MP +DVVSY ++I G + G A+ + M + L PD
Sbjct: 183 AETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDS 242
Query: 433 VAFTIVL 439
+ VL
Sbjct: 243 FTLSSVL 249
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 186/536 (34%), Positives = 299/536 (55%), Gaps = 39/536 (7%)
Query: 43 LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVNPN 100
L + CK L Q+H+ ++ GL + S+V I SL+ P L Y+ +F+ I P+
Sbjct: 18 LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELI-YSASLSVPGALKYAHKLFDEIPKPD 76
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
+ N +L+G +Q+ + + +++ + + PD+YTF V+KACS + G A H
Sbjct: 77 VSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHG 136
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
V+R G +++ Y K A+I+ +A+ GDL
Sbjct: 137 KVVRHGF---------VLNEYVK----------------------NALILFHANCGDLGI 165
Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
A +FD + V+W+++ G K G + A +LFDEMP ++ V++ MI G K +M
Sbjct: 166 ASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEM 225
Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
SAR LF+ ++DVV W+A+ISGY G P EA+ IF +M PD ++SL+SAC
Sbjct: 226 DSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSAC 285
Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIA----ALVDMNAKCGNMDRAAELFETMPNRD 396
+ +G+L+ + Y+ + S +V AL+DM AKCG++DRA E+F + +RD
Sbjct: 286 AVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRD 345
Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
+ ++ ++I GL++H H ++ +F+ M + P+EV F V+ ACSH G V++G ++F
Sbjct: 346 LSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFS 404
Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
M+++Y I P+ +HY CMVD+LGR G L+ A+ + SM +EP+A W LLGACK+Y ++
Sbjct: 405 LMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464
Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
ELG+ +L + +G YVLLSNIYA+ +W V VR + ++K G S
Sbjct: 465 ELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVS 520
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 332 bits (852), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/546 (33%), Positives = 302/546 (55%), Gaps = 27/546 (4%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
L L+KKC L Q+ + ++ +E+ + L+ + L +YS+ +F+ PN
Sbjct: 41 LFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVEL-----GDFNYSSFLFSVTEEPN 95
Query: 101 TFLWNTLLKGYSQNSRFIEV-FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
+ +N +++G + E +++ R+ PDK+T+ V AC+ + + G ++H
Sbjct: 96 HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155
Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
+++ + G++ DV + SLI +Y K ++ ARK+FDE+ ER+ VSW +MI GY+ G
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215
Query: 220 EAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT-----M 270
+A +F M E + +++G +GDLR+ R L +EM + +T +
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR-LLEEMAITKKIGLSTFLGSKL 274
Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
I Y K GD+ SAR +F +D VAW+A+I+ Y+QNG+ EA K+F +M V PD
Sbjct: 275 ISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDA 334
Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH---VIAALVDMNAKCGNMDRAAE 387
L +++SAC VG L+L ++++ S +LS H V LVDM KCG ++ A
Sbjct: 335 GTLSTVLSACGSVGALELGKQIETHAS----ELSLQHNIYVATGLVDMYGKCGRVEEALR 390
Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
+FE MP ++ ++ +MI + GH ++A+ LFDRM + P ++ F VL+AC H GL
Sbjct: 391 VFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGL 447
Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
V G R+F M +++ +VP EHY ++DLL R G L A+E + P +P A+L
Sbjct: 448 VHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAIL 507
Query: 508 GACKLYSDIELGELVANRLFEL-EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
GAC D+ + E L E+ E +NAG+YV+ SN+ A W + +R+ M++RG+
Sbjct: 508 GACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVV 567
Query: 567 KIPGCS 572
K PGCS
Sbjct: 568 KTPGCS 573
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 133/308 (43%), Gaps = 29/308 (9%)
Query: 3 KIDEPNTPCKHKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIK 62
K++E ++ SML CS + + LL + + KK L T L
Sbjct: 223 KMEEEGFEPDERTLVSMLGACSHLGDL---RTGRLLEEMAITKKIGLSTFLG-------- 271
Query: 63 KGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFT 122
+ IS+ + L + VFN+++ + W ++ YSQN + E F
Sbjct: 272 ----------SKLISM-YGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 320
Query: 123 IFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182
+F + + PD T V+ AC V ++ G I + +++V T L+D+YG
Sbjct: 321 LFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYG 380
Query: 183 KRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP-ERSNVSWNALIG 241
K + A +VF+ MP +N +W AMI YA G EA +FD M S++++ ++
Sbjct: 381 KCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLS 440
Query: 242 GLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DV 295
V G + + F EM + YT +ID ++ G + A E P + D
Sbjct: 441 ACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDE 500
Query: 296 VAWSALIS 303
+ +A++
Sbjct: 501 IMLAAILG 508
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 332 bits (850), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 179/458 (39%), Positives = 266/458 (58%), Gaps = 43/458 (9%)
Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPERNVVSWTAMIVGYASV 215
IH V+R G+D+ ++ T LI K AR+V + + RN WTA+I GYA
Sbjct: 68 IHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIE 127
Query: 216 GDLVEAKTVFDLM--PERSNVSW------------------------------------- 236
G EA ++ M E + VS+
Sbjct: 128 GKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVG 187
Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
N +I VK + AR++FDEMPER+V+S+T +I YA+VG+M A LFE+ P +D+V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247
Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
AW+A+++G+AQN +P EA++ F M ++ DE + +SAC+Q+G ++
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307
Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
+S S VI +AL+DM +KCGN++ A +F +M N++V +Y SMI GL+ HG ++
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367
Query: 416 AVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
A+ LF M+++ + P+ V F L ACSH GLV+ G + F++M + + P+ +HY CM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427
Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
VDLLGRTG L+ A EL+ +M VEPH WGALLGAC+++++ E+ E+ A LFELEP
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDII 487
Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
G+Y+LLSN+YA+A W V VR +KE+GL+K P S
Sbjct: 488 GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 201/415 (48%), Gaps = 45/415 (10%)
Query: 22 NCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS 81
N + I+ K + S ++ + C + Q+H H+++KGL+Q ++ I
Sbjct: 34 NSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTK 93
Query: 82 LATPLS-YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140
L P+ Y+ V + N FLW +++GY+ +F E ++ + +EE P +TF
Sbjct: 94 LGVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFS 153
Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
++KAC + + G HA R V+VG ++ID+Y K + I CARKVFDEMPER
Sbjct: 154 ALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPER 213
Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM- 259
+V+SWT +I YA VG++ A +F+ +P + V+W A++ G + + A + FD M
Sbjct: 214 DVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME 273
Query: 260 ----------------------------------------PERNVVSYTTMIDGYAKVGD 279
P +VV + +ID Y+K G+
Sbjct: 274 KSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333
Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMS 338
+ A ++F + +++V +S++I G A +G+ EA+ +F M ++ ++P+ V +
Sbjct: 334 VEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALM 393
Query: 339 ACSQVGNLDLSNWV-DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
ACS G +D V DS + +R H +VD+ + G + A EL +TM
Sbjct: 394 ACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY-TCMVDLLGRTGRLQEALELIKTM 447
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 330 bits (846), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 278/485 (57%), Gaps = 7/485 (1%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVL 150
VF+R+ +T LWNT++ GY +N ++E +F LI E D T ++ A + +
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235
Query: 151 SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
+R G IH+ + G +V T I LY K +I +F E + ++V++ AMI
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295
Query: 211 GYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-- 267
GY S G+ + ++F +LM + + + L+ + G L + + N +S+
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHAS 355
Query: 268 --TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN 325
T + Y+K+ ++ SAR LF+ +P++ + +W+A+ISGY QNG ++A+ +F +M
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415
Query: 326 VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385
P+ + ++SAC+Q+G L L WV L RS S +V AL+ M AKCG++ A
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEA 474
Query: 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
LF+ M ++ V++ +MI G +HG G++A+++F ML+ G+TP V F VL ACSH
Sbjct: 475 RRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHA 534
Query: 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA 505
GLV++G F +M + Y PS +HYACMVD+LGR GHL+ A + + +M +EP +S W
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWET 594
Query: 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565
LLGAC+++ D L V+ +LFEL+P N G +VLLSNI++ + VR K+R L
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654
Query: 566 RKIPG 570
K PG
Sbjct: 655 AKAPG 659
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/506 (25%), Positives = 235/506 (46%), Gaps = 34/506 (6%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
L K+ +HL Q H+ II G D SL+ L + Y+ +F + P+
Sbjct: 24 LDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGA-IYYARDIFLSVQRPD 82
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV-PDKYTFPLVIKACSHVLSVREGTAIH 159
FL+N L++G+S N ++F L + + P+ T+ I A S R G IH
Sbjct: 83 VFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIH 142
Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
+ G D ++ +G++++ +Y K + ARKVFD MPE++ + W MI GY V
Sbjct: 143 GQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYV 202
Query: 220 EAKTVF-DLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG- 273
E+ VF DL+ E + ++ + ++ +LR Q+ + S+ ++ G
Sbjct: 203 ESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGF 262
Query: 274 ---YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
Y+K G + +LF D+VA++A+I GY NG+ + ++ +F ++ +
Sbjct: 263 ISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRS 322
Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
LVSL+ G+L L + Y +S+ LS A V AL + +K ++ A +LF+
Sbjct: 323 STLVSLVPVS---GHLMLIYAIHGYCLKSNF-LSHASVSTALTTVYSKLNEIESARKLFD 378
Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450
P + + S+ +MI G + +G A+SLF M +P+ V T +L+AC+ +G +
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Query: 451 G-WRFFEAMQNVYAIVPSPEHYA------CMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
G W V+ +V S + + ++ + + G + A L + M + + W
Sbjct: 439 GKW--------VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTW 489
Query: 504 GALLGACKLYSDIELGELVANRLFEL 529
++ L+ G+ N +E+
Sbjct: 490 NTMISGYGLHGQ---GQEALNIFYEM 512
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 23/269 (8%)
Query: 38 LSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
L + TL+ + HL + +H + +K H+ V+ ++ +S + + +F+
Sbjct: 320 LRSSTLVSLVPVSGHLMLIYAIHGYCLKSNF-LSHASVSTALTTVYSKLNEIESARKLFD 378
Query: 95 RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
+ WN ++ GY+QN + ++F + + E P+ T ++ AC+ + ++
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSL 438
Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
G +H V + ++V T+LI +Y K I+ AR++FD M ++N V+W MI GY
Sbjct: 439 GKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGL 498
Query: 215 VGDLVEAKTVFDLMPER----SNVSWNALI-----GGLVKIGDLRSARQLFDEMPER--- 262
G EA +F M + V++ ++ GLVK GD ++F+ M R
Sbjct: 499 HGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGD-----EIFNSMIHRYGF 553
Query: 263 --NVVSYTTMIDGYAKVGDMTSARSLFEA 289
+V Y M+D + G + A EA
Sbjct: 554 EPSVKHYACMVDILGRAGHLQRALQFIEA 582
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 329 bits (844), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 185/533 (34%), Positives = 288/533 (54%), Gaps = 23/533 (4%)
Query: 56 VHSHIIKKGLEQD----HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGY 111
VH+H+IK D + V F+ C+S+ Y+ VF R+ + WN +L G+
Sbjct: 74 VHAHLIKSPFWSDVFVGTATVDMFVK-CNSV----DYAAKVFERMPERDATTWNAMLSGF 128
Query: 112 SQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171
Q+ + F++F + E PD T +I++ S S++ A+HA IR GVD V
Sbjct: 129 CQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQV 188
Query: 172 FVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLM- 228
V + I YGK ++ A+ VF+ + +R VVSW +M Y+ G+ +A ++ LM
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248
Query: 229 -----PERSNVSWNALIGGLVKIGDLRSARQLFDEM----PERNVVSYTTMIDGYAKVGD 279
P+ S ++ L L R + ++++ + T I Y+K D
Sbjct: 249 REEFKPDLS--TFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSED 306
Query: 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
SAR LF+ R V+W+ +ISGYA+ G DEA+ +F M +PD L+SL+S
Sbjct: 307 TCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISG 366
Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
C + G+L+ W+D+ + AL+DM +KCG++ A ++F+ P + VV+
Sbjct: 367 CGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVT 426
Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
+ +MI G +++G +A+ LF +M+ P+ + F VL AC+H G +E GW +F M+
Sbjct: 427 WTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMK 486
Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
VY I P +HY+CMVDLLGR G L+ A EL+ +M +P A WGALL ACK++ ++++
Sbjct: 487 QVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIA 546
Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
E A LF LEPQ A YV ++NIYA A W +RS MK+R ++K PG S
Sbjct: 547 EQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGES 599
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 198/435 (45%), Gaps = 26/435 (5%)
Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
WN ++ + +E +F + R P+ +TFP V KAC+ + V +HA +I
Sbjct: 20 WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79
Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
+ DVFVGT+ +D++ K + A KVF+ MPER+ +W AM+ G+ G +A +
Sbjct: 80 KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 139
Query: 224 VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYA 275
+F M + + L++ + +L + M + V T I Y
Sbjct: 140 LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 199
Query: 276 KVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
K GD+ SA+ +FEA DR VV+W+++ Y+ G+ +A ++ M + +PD
Sbjct: 200 KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 259
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
++L ++C L + S+ D I + M +K + A LF+ M
Sbjct: 260 INLAASCQNPETLTQGRLIHSHAIHLGTD-QDIEAINTFISMYSKSEDTCSARLLFDIMT 318
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
+R VS+ MI G + G +A++LF M+ G PD V +++ C G +E G +
Sbjct: 319 SRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG-K 377
Query: 454 FFEAMQNVYAIVPSPEHYAC--MVDLLGRTGHLKSAYELLNSMPVEPHASAW-------- 503
+ +A ++Y C ++D+ + G + A ++ ++ P E W
Sbjct: 378 WIDARADIYG-CKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EKTVVTWTTMIAGYA 435
Query: 504 --GALLGACKLYSDI 516
G L A KL+S +
Sbjct: 436 LNGIFLEALKLFSKM 450
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 328 bits (842), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 183/536 (34%), Positives = 299/536 (55%), Gaps = 12/536 (2%)
Query: 48 KLQTHLHQVHSHIIKKG-LEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
KL+ H+ Q+H+ +I G L S+ I+ C + +SY+ VF+ + ++N+
Sbjct: 28 KLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIG-EISYARKVFDELPQRGVSVYNS 86
Query: 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166
++ YS+ EV ++ ++I E+ PD TF + IKAC L + +G A+ + +G
Sbjct: 87 MIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFG 146
Query: 167 VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
DVFV +S+++LY K ++ A +F +M +R+V+ WT M+ G+A G ++A +
Sbjct: 147 YKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYR 206
Query: 227 LMPE----RSNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGYAKVG 278
M R V L+ +GD + R L+ NVV T+++D YAKVG
Sbjct: 207 EMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVG 266
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
+ A +F + V+W +LISG+AQNG ++A + +M S QPD LV ++
Sbjct: 267 FIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLV 326
Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
ACSQVG+L V Y+ + H+ L R AL+DM +KCG + + E+FE + +D+V
Sbjct: 327 ACSQVGSLKTGRLVHCYILKRHV-LDRV-TATALMDMYSKCGALSSSREIFEHVGRKDLV 384
Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
+ +MI IHG+G++ VSLF +M + PD F +L+A SH GLVE G +F M
Sbjct: 385 CWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVM 444
Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
N Y I PS +HY C++DLL R G ++ A +++NS ++ W ALL C + ++ +
Sbjct: 445 INKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSV 504
Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
G++ AN++ +L P + G L+SN +ATA++W +V VR M+ + K+PG S++
Sbjct: 505 GDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAI 560
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/504 (36%), Positives = 290/504 (57%), Gaps = 21/504 (4%)
Query: 90 TAVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
T +FNR V+ + F WN+++ +++ E F + + P + +FP IKACS
Sbjct: 29 TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSS 88
Query: 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAM 208
+ + G H +G D+FV ++LI +Y ++ ARKVFDE+P+RN+VSWT+M
Sbjct: 89 LFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 209 IVGYASVGDLVEAKTVFDLMPERSNVSWNALI---GGLVKIGDLRS---ARQLFDEMP-- 260
I GY G+ ++A ++F + N +A+ GLV + S A+ L + +
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
Query: 261 ------ERNVVSYTTMIDGYAKVGD--MTSARSLFEAAPDRDVVAWSALISGYAQNGQPD 312
+R V T++D YAK G+ + AR +F+ D+D V++++++S YAQ+G +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSN 268
Query: 313 EAVKIFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA- 370
EA ++F + +K V + L +++ A S G L + + + R M L ++
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGT 326
Query: 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430
+++DM KCG ++ A + F+ M N++V S+ +MI G +HGH +A+ LF M+ G+ P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386
Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
+ + F VL ACSH GL +GWR+F AM+ + + P EHY CMVDLLGR G L+ AY+L
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446
Query: 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
+ M ++P + W +LL AC+++ ++EL E+ RLFEL+ N G Y+LLS+IYA A RW
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506
Query: 551 LDVCLVRSKMKERGLRKIPGCSSL 574
DV VR MK RGL K PG S L
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLL 530
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 192/375 (51%), Gaps = 21/375 (5%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
Q H G + D V+ + + +S L + VF+ I N W ++++GY N
Sbjct: 97 QTHQQAFVFGYQSD-IFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTF------PLVIKACSHVLSVREGTAIHAAVIRWGVD 168
++ ++F L+ +E D F VI ACS V + +IH+ VI+ G D
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215
Query: 169 EDVFVGTSLIDLYGKRKE--ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD 226
V VG +L+D Y K E ++ ARK+FD++ +++ VS+ +++ YA G EA VF
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275
Query: 227 LMPERSNVSWNALIGGLVKI-----GDLRSARQLFDEMP----ERNVVSYTTMIDGYAKV 277
+ + V++NA+ V + G LR + + D++ E +V+ T++ID Y K
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335
Query: 278 GDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337
G + +AR F+ +++V +W+A+I+GY +G +A+++F M V+P+ VS++
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395
Query: 338 SACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR- 395
+ACS G +++ W ++ R ++ H +VD+ + G + +A +L + M +
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQRMKMKP 454
Query: 396 DVVSYCSMIKGLSIH 410
D + + S++ IH
Sbjct: 455 DSIIWSSLLAACRIH 469
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 142/279 (50%), Gaps = 12/279 (4%)
Query: 37 LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI-SLCHSLATPLSYSTAVFNR 95
L+S ++ + + +HS +IK+G ++ S+ + + ++ + +F++
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245
Query: 96 IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHVLSVRE 154
IV+ + +N+++ Y+Q+ E F +F RL++ + V + T V+ A SH ++R
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305
Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
G IH VIR G+++DV VGTS+ID+Y K + ARK FD M +NV SWTAMI GY
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365
Query: 215 VGDLVEAKTVFDLMPE---RSN-VSWNALIGGLVKIGDLRSARQLFDEMPERNVVS---- 266
G +A +F M + R N +++ +++ G + F+ M R V
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425
Query: 267 -YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
Y M+D + G + A L + + D + WS+L++
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/551 (34%), Positives = 303/551 (54%), Gaps = 13/551 (2%)
Query: 31 FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYST 90
P+ S LL LI +C Q+ + +I + L +D ++ ++ A SYS+
Sbjct: 3 LPEKSVLLE---LISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSS 59
Query: 91 AVFNRIVNP-NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
+ + I + ++F +NTLL Y+ + + + PD +TFP V KAC
Sbjct: 60 VILHSIRSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKF 119
Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
+REG IH V + G +D++V SL+ YG E A KVF EMP R+VVSWT +I
Sbjct: 120 SGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGII 179
Query: 210 VGYASVGDLVEAKTVFDLMPERSNV-SWNALIGGLVKIGDLRSARQLFDEMPER-NVVSY 267
G+ G EA F M N+ ++ ++ ++G L + + + +R +++S
Sbjct: 180 TGFTRTGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISL 239
Query: 268 TT---MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM-CS 323
T +ID Y K ++ A +F +D V+W+++ISG + EA+ +FS M S
Sbjct: 240 ETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTS 299
Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
++PD IL S++SAC+ +G +D WV Y+ + + H+ A+VDM AKCG ++
Sbjct: 300 SGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWD-THIGTAIVDMYAKCGYIE 358
Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
A E+F + +++V ++ +++ GL+IHGHG +++ F+ M+ G P+ V F L AC
Sbjct: 359 TALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACC 418
Query: 444 HVGLVEDGWRFFEAMQNV-YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502
H GLV++G R+F M++ Y + P EHY CM+DLL R G L A EL+ +MPV+P
Sbjct: 419 HTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRI 478
Query: 503 WGALLGACKLYSDI-ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
GA+L ACK + EL + + + ++E +++G YVLLSNI+A RW DV +R MK
Sbjct: 479 CGAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMK 538
Query: 562 ERGLRKIPGCS 572
+G+ K+PG S
Sbjct: 539 VKGISKVPGSS 549
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/574 (33%), Positives = 292/574 (50%), Gaps = 51/574 (8%)
Query: 48 KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTL 107
+L H+ Q+H+ I+ ++ D+ L + IS ++ + VF+ I N F +N L
Sbjct: 36 RLPLHVLQLHARIVVFSIKPDNFLASKLISF-YTRQDRFRQALHVFDEITVRNAFSYNAL 94
Query: 108 LKGYSQNSRFIEVFTIFVRLI------REEAVPDKYTFPLVIKACSHVLSVREGT---AI 158
L Y+ + + F++F+ I + A PD + V+KA S G+ +
Sbjct: 95 LIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQV 154
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H VIR G D DVFVG +I Y K I ARKVFDEM ER+VVSW +MI GY+ G
Sbjct: 155 HGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSF 214
Query: 219 VEAK--------------------TVFDLMPERSNVSW--------------------NA 238
+ K +VF + S++ + NA
Sbjct: 215 EDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNA 274
Query: 239 LIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAW 298
+IG K G L AR LFDEM E++ V+Y +I GY G + A +LF + W
Sbjct: 275 VIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTW 334
Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
+A+ISG QN +E + F +M +P+ L SL+ + + NL + ++ R
Sbjct: 335 NAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIR 394
Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
+ D + +V +++D AK G + A +F+ +R ++++ ++I ++HG A S
Sbjct: 395 NGAD-NNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACS 453
Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
LFD+M G PD+V T VL+A +H G + F++M Y I P EHYACMV +L
Sbjct: 454 LFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVL 513
Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
R G L A E ++ MP++P A WGALL + D+E+ +RLFE+EP+N G+Y
Sbjct: 514 SRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYT 573
Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+++N+Y A RW + +VR+KMK GL+KIPG S
Sbjct: 574 IMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTS 607
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 209/459 (45%), Gaps = 47/459 (10%)
Query: 35 SCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
SC+L AL+ L + QVH +I+ G + D V + + ++ + + VF+
Sbjct: 133 SCVLKALSGCDDFWLGSLARQVHGFVIRGGFDSD-VFVGNGMITYYTKCDNIESARKVFD 191
Query: 95 RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR-EEAVPDKYTFPLVIKACSHVLSVR 153
+ + WN+++ GYSQ+ F + ++ ++ + P+ T V +AC +
Sbjct: 192 EMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLI 251
Query: 154 EGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA 213
G +H +I + D+ + ++I Y K + AR +FDEM E++ V++ A+I GY
Sbjct: 252 FGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYM 311
Query: 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM-------------- 259
+ G + EA +F M +WNA+I GL++ F EM
Sbjct: 312 AHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSS 371
Query: 260 -------------------------PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294
+ N+ T++ID YAK+G + A+ +F+ DR
Sbjct: 372 LLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRS 431
Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWV-D 353
++AW+A+I+ YA +G D A +F M +PD+ L +++SA + G+ D++ + D
Sbjct: 432 LIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFD 491
Query: 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS-YCSMIKGLSIHGH 412
S L++ ++ H A +V + ++ G + A E MP + + +++ G S+ G
Sbjct: 492 SMLTKYDIEPGVEHY-ACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGD 550
Query: 413 GRQAVSLFDRMLSEGLTPDEVA-FTIVLTACSHVGLVED 450
A DR+ + P+ +TI+ + G E+
Sbjct: 551 LEIARFACDRLFE--MEPENTGNYTIMANLYTQAGRWEE 587
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/540 (32%), Positives = 308/540 (57%), Gaps = 25/540 (4%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
QVH++ ++KG E + ++ +++ L L+ S + + WNT+L QN
Sbjct: 223 QVHAYGLRKG-ELNSFIINTLVAMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQN 280
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG-VDEDVFV 173
+ +E ++ E PD++T V+ ACSH+ +R G +HA ++ G +DE+ FV
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340
Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN 233
G++L+D+Y K++ R+VFD M +R + W AMI GY+ EA +F M E +
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAG 400
Query: 234 VSWNA-----LIGGLVKIGDLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSAR 284
+ N+ ++ V+ G + + +R + T++D Y+++G + A
Sbjct: 401 LLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAM 460
Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDM------CSK-----NVQPDEFIL 333
+F DRD+V W+ +I+GY + ++A+ + M SK +++P+ L
Sbjct: 461 RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITL 520
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
++++ +C+ + L + +Y ++++ A V +ALVDM AKCG + + ++F+ +P
Sbjct: 521 MTILPSCAALSALAKGKEIHAYAIKNNLATDVA-VGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
++V+++ +I +HG+G++A+ L M+ +G+ P+EV F V ACSH G+V++G R
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE-PHASAWGALLGACKL 512
F M+ Y + PS +HYAC+VDLLGR G +K AY+L+N MP + A AW +LLGA ++
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
++++E+GE+ A L +LEP A YVLL+NIY++A W VR MKE+G+RK PGCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 177/385 (45%), Gaps = 21/385 (5%)
Query: 83 ATPLSYSTAVFNRIVN-PNTFL--------WNTLLKGYSQNSRFIEVFTIFVRLIREEAV 133
ATP S + V + + P+ F+ W LL+ +++ E +V +I
Sbjct: 35 ATPTSATEDVASAVSGAPSIFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIK 94
Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLYGKRKEISCARK 192
PD Y FP ++KA + + + G IHA V ++G D V V +L++LY K + K
Sbjct: 95 PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 154
Query: 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFD-LMPERSNVSWNALIGGLVKIGDLRS 251
VFD + ERN VSW ++I S A F ++ E S L+ + +L
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 214
Query: 252 ARQLFD---------EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302
L E N T++ Y K+G + S++ L + RD+V W+ ++
Sbjct: 215 PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274
Query: 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362
S QN Q EA++ +M + V+PDEF + S++ ACS + L + +Y ++
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334
Query: 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422
+ V +ALVDM C + +F+ M +R + + +MI G S + H ++A+ LF
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394
Query: 423 M-LSEGLTPDEVAFTIVLTACSHVG 446
M S GL + V+ AC G
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSG 419
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/515 (22%), Positives = 234/515 (45%), Gaps = 38/515 (7%)
Query: 28 PINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLS 87
P N+ P+ LL A+ ++ +L Q+H+H+ K G D VA+ + +
Sbjct: 95 PDNYAFPA-LLKAVADLQDMELGK---QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 150
Query: 88 YSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147
VF+RI N WN+L+ ++ F ++ E P +T V+ ACS
Sbjct: 151 AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 210
Query: 148 HV---LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS 204
++ + G +HA +R G + + F+ +L+ +YGK +++ ++ + R++V+
Sbjct: 211 NLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 269
Query: 205 WTAMIVGYASVGDLVEAKTVFDLM------PERSNVSWNALIGGLVKIGDLRSARQLF-- 256
W ++ L+EA M P+ +S +++ + LR+ ++L
Sbjct: 270 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS--SVLPACSHLEMLRTGKELHAY 327
Query: 257 ---DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
+ + N + ++D Y + S R +F+ DR + W+A+I+GY+QN E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387
Query: 314 AVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372
A+ +F M S + + + ++ AC + G + ++ + +D R V L
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR-FVQNTL 446
Query: 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM------LSE 426
+DM ++ G +D A +F M +RD+V++ +MI G H A+ L +M +S+
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506
Query: 427 G-----LTPDEVAFTIVLTACSHVGLVEDGWRFFE-AMQNVYAIVPSPEHYACMVDLLGR 480
G L P+ + +L +C+ + + G A++N A + + +VD+ +
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--SALVDMYAK 564
Query: 481 TGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
G L+ + ++ + +P + + W ++ A ++ +
Sbjct: 565 CGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%)
Query: 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357
W L+ ++ EAV + DM ++PD + +L+ A + + +++L + +++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 358 RSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAV 417
+ + V LV++ KCG+ ++F+ + R+ VS+ S+I L A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
F ML E + P V+TACS++ + E
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/479 (35%), Positives = 271/479 (56%), Gaps = 11/479 (2%)
Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
WN L+ + S F E +++ ++R + PD ++FP ++K+C+ + G +H V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS--WTAMIVGYASVGDLVEA 221
+ G + + FV T+LI +Y K ++ ARKVF+E P+ + +S + A+I GY + + +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGD----LRSARQLFDEMP----ERNVVSYTTMIDG 273
+F M E + + GLV + L R L + + V + I
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
Y K G + + R LF+ P + ++ W+A+ISGY+QNG + ++++ M S V PD F L
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
VS++S+C+ +G + + V L S+ + V A + M A+CGN+ +A +F+ MP
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGK-LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
+ +VS+ +MI +HG G + LFD M+ G+ PD F +VL+ACSH GL + G
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379
Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
F AM+ Y + P PEHY+C+VDLLGR G L A E + SMPVEP + WGALLGACK++
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439
Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
++++ EL ++ E EP N G YVL+SNIY+ + + +R M+ER RK PG S
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 16/314 (5%)
Query: 38 LSALTLIKKCKLQTHL---HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
++ L L+ C + +L +H +K GL+ + +++ FI++ + + +F+
Sbjct: 157 VTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGS-VEAGRRLFD 215
Query: 95 RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
+ WN ++ GYSQN +V ++ ++ PD +T V+ +C+H+ + +
Sbjct: 216 EMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 275
Query: 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
G + V G +VFV + I +Y + ++ AR VFD MP +++VSWTAMI Y
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335
Query: 215 VGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMP-----ERNVV 265
G +FD M +R + ++ G +LF M E
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPE 395
Query: 266 SYTTMIDGYAKVGDMTSARSLFEAAP-DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
Y+ ++D + G + A E+ P + D W AL+ + D A F+ +
Sbjct: 396 HYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI-- 453
Query: 325 NVQPDEFILVSLMS 338
+P+ LMS
Sbjct: 454 EFEPNNIGYYVLMS 467
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/543 (33%), Positives = 304/543 (55%), Gaps = 16/543 (2%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
+++K C+ +++H +K G D + A I L +S + + +F+ + +
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHL-YSRYKAVGNARILFDEMPVRDM 216
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
WN ++ GY Q+ E T+ L D T ++ AC+ G IH+
Sbjct: 217 GSWNAMISGYCQSGNAKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVTIHSY 272
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
I+ G++ ++FV LIDLY + + +KVFD M R+++SW ++I Y + A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332
Query: 222 KTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMID 272
++F M + ++ +L L ++GD+R+ R + + ++ ++
Sbjct: 333 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392
Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEF 331
YAK+G + SAR++F P+ DV++W+ +ISGYAQNG EA+++++ M + + ++
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452
Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
VS++ ACSQ G L + L ++ + L V+ +L DM KCG ++ A LF
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD-VFVVTSLADMYGKCGRLEDALSLFYQ 511
Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
+P + V + ++I HGHG +AV LF ML EG+ PD + F +L+ACSH GLV++G
Sbjct: 512 IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571
Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
FE MQ Y I PS +HY CMVD+ GR G L++A + + SM ++P AS WGALL AC+
Sbjct: 572 QWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACR 631
Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
++ +++LG++ + LFE+EP++ G +VLLSN+YA+A +W V +RS +GLRK PG
Sbjct: 632 VHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGW 691
Query: 572 SSL 574
SS+
Sbjct: 692 SSM 694
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 238/484 (49%), Gaps = 31/484 (6%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISL-CHSLATPLSYSTAVFNRIVNPN 100
TL + C +H+ ++ Q+ + A ++L C+ L+ T F+ I N +
Sbjct: 59 TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHT--FDHIQNRD 116
Query: 101 TFLWNTLLKGYSQ---NSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157
+ WN ++ GY + +S I F++F ++ PD TFP V+KAC V+ +G
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTVI---DGNK 171
Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
IH +++G DV+V SLI LY + K + AR +FDEMP R++ SW AMI GY G+
Sbjct: 172 IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGN 231
Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL----FDEMPERNVVSYTTMIDG 273
EA T+ + + +V+ +L+ + GD + E + +ID
Sbjct: 232 AKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
YA+ G + + +F+ RD+++W+++I Y N QP A+ +F +M +QPD L
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
+SL S SQ+G++ V + R L + A+V M AK G +D A +F +P
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGW 452
N DV+S+ ++I G + +G +A+ +++ M EG + ++ + VL ACS G + G
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471
Query: 453 RFFEAM------QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
+ + +V+ + + D+ G+ G L+ A L +P ++ W L
Sbjct: 472 KLHGRLLKNGLYLDVFVVTS-------LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTL 523
Query: 507 LGAC 510
+ AC
Sbjct: 524 I-AC 526
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 21/257 (8%)
Query: 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFS-D 320
+NV +++ Y +G++ AR F+ +RDV AW+ +ISGY + G E ++ FS
Sbjct: 84 QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF 143
Query: 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380
M S + PD S++ AC V + N + L+ + +V A+L+ + ++
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVID---GNKIHC-LALKFGFMWDVYVAASLIHLYSRYK 199
Query: 381 NMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVL 439
+ A LF+ MP RD+ S+ +MI G G+ ++A++ LS GL D V +L
Sbjct: 200 AVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSLL 254
Query: 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSMP 495
+AC+ G G + Y+I E ++DL G L+ ++ + M
Sbjct: 255 SACTEAGDFNRG-----VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMY 309
Query: 496 VEPHASAWGALLGACKL 512
V S W +++ A +L
Sbjct: 310 VRDLIS-WNSIIKAYEL 325
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/460 (36%), Positives = 267/460 (58%), Gaps = 15/460 (3%)
Query: 125 VRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184
+R++ +E+ P + T+ L+I C H S+ + +H ++ G D+D F+ T LI +Y
Sbjct: 66 IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDL 125
Query: 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------PERSNVSW-- 236
+ ARKVFD+ +R + W A+ G E ++ M +R ++
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVL 185
Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPD 292
A + + L +++ + R S+ TT++D YA+ G + A +F P
Sbjct: 186 KACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPV 245
Query: 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMC--SKNVQPDEFILVSLMSACSQVGNLDLSN 350
R+VV+WSA+I+ YA+NG+ EA++ F +M +K+ P+ +VS++ AC+ + L+
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305
Query: 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH 410
+ Y+ R +D S VI+ALV M +CG ++ +F+ M +RDVVS+ S+I +H
Sbjct: 306 LIHGYILRRGLD-SILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVH 364
Query: 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470
G+G++A+ +F+ ML+ G +P V F VL ACSH GLVE+G R FE M + I P EH
Sbjct: 365 GYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEH 424
Query: 471 YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
YACMVDLLGR L A +++ M EP WG+LLG+C+++ ++EL E + RLF LE
Sbjct: 425 YACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALE 484
Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
P+NAG+YVLL++IYA A W +V V+ ++ RGL+K+PG
Sbjct: 485 PKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 191/402 (47%), Gaps = 22/402 (5%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
+VH HI+ G +QD L I + L + + Y+ VF++ ++WN L + +
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGS-VDYARKVFDKTRKRTIYVWNALFRALTLA 156
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC----SHVLSVREGTAIHAAVIRWGVDED 170
EV ++ ++ R D++T+ V+KAC V + +G IHA + R G
Sbjct: 157 GHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216
Query: 171 VFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA-KTVFDLMP 229
V++ T+L+D+Y + + A VF MP RNVVSW+AMI YA G EA +T ++M
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 230 ERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG----YAKVGDM 280
E + S N +++ + L + + + R + S +I Y + G +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336
Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
+ +F+ DRDVV+W++LIS Y +G +A++IF +M + P VS++ AC
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396
Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM---PNRDV 397
S G ++ + + R H + A +VD+ + +D AA++ + M P V
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456
Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439
+ S++ IHG+ A R+ + L P ++L
Sbjct: 457 --WGSLLGSCRIHGNVELAERASRRLFA--LEPKNAGNYVLL 494
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 107/232 (46%), Gaps = 20/232 (8%)
Query: 38 LSALTLIKKCKLQTHLHQ---VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94
++ +++++ C L Q +H +I+++GL+ +++ +++ + L VF+
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTM-YGRCGKLEVGQRVFD 344
Query: 95 RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154
R+ + + WN+L+ Y + + IF ++ A P TF V+ ACSH V E
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404
Query: 155 GTAIHAAVIR-WGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM-PERNVVSWTAMIVGY 212
G + + R G+ + ++DL G+ + A K+ +M E W +++ G
Sbjct: 405 GKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL-GS 463
Query: 213 ASVGDLVE-----AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEM 259
+ VE ++ +F L P+ + G V + D+ + Q++DE+
Sbjct: 464 CRIHGNVELAERASRRLFALEPKNA--------GNYVLLADIYAEAQMWDEV 507
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 188/529 (35%), Positives = 293/529 (55%), Gaps = 14/529 (2%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
Q HS IIKK L ++ V + + ++ L + +F R+ + + WNT++ Y Q+
Sbjct: 449 QFHSIIIKKKLAKN-LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQD 507
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
E F +F R+ V D +KAC+HV + +G +H ++ G+D D+ G
Sbjct: 508 ENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTG 567
Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
+SLID+Y K I ARKVF +PE +VVS A+I GY S +L EA +F M R
Sbjct: 568 SSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY-SQNNLEEAVVLFQEMLTRGVN 626
Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY-----TTMIDGYAKVGDMTSARS 285
S +++ ++ K L Q ++ +R S +++ Y MT A +
Sbjct: 627 PSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACA 686
Query: 286 LF-EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344
LF E + + +V W+ ++SG++QNG +EA+K + +M V PD+ V+++ CS +
Sbjct: 687 LFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLS 746
Query: 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR-DVVSYCSM 403
+L + S + DL L+DM AKCG+M ++++F+ M R +VVS+ S+
Sbjct: 747 SLREGRAIHSLIFHLAHDLDEL-TSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSL 805
Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
I G + +G+ A+ +FD M + PDE+ F VLTACSH G V DG + FE M Y
Sbjct: 806 INGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYG 865
Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
I +H ACMVDLLGR G+L+ A + + + ++P A W +LLGAC+++ D GE+ A
Sbjct: 866 IEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISA 925
Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+L ELEPQN+ +YVLLSNIYA+ W +R M++RG++K+PG S
Sbjct: 926 EKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYS 974
Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/469 (23%), Positives = 228/469 (48%), Gaps = 24/469 (5%)
Query: 56 VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
VH+ IK GL + + + +S+ +S + + VF + N WN +++GY+ N
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSM-YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407
Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
+V +F+ + D +TF ++ C+ + G+ H+ +I+ + +++FVG
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467
Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS 235
+L+D+Y K + AR++F+ M +R+ V+W +I Y + EA +F M VS
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS 527
Query: 236 WNALIGGLVK----IGDLRSARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
A + +K + L +Q+ +R++ + +++ID Y+K G + AR +F
Sbjct: 528 DGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVF 587
Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
+ P+ VV+ +ALI+GY+QN +EAV +F +M ++ V P E +++ AC + +L
Sbjct: 588 SSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLT 646
Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKG 406
L +++ ++ +L+ M M A LF + + + +V + M+ G
Sbjct: 647 LGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706
Query: 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466
S +G +A+ + M +G+ PD+ F VL CS + + +G + +++++
Sbjct: 707 HSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG-------RAIHSLIF 759
Query: 467 SPEH------YACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
H ++D+ + G +K + ++ + M + +W +L+
Sbjct: 760 HLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLING 808
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/464 (26%), Positives = 224/464 (48%), Gaps = 52/464 (11%)
Query: 56 VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
VHS + G++ + L + L ++ +SY+ F+ + + WN++L YS
Sbjct: 82 VHSKSLILGIDSEGRLGNAIVDL-YAKCAQVSYAEKQFD-FLEKDVTAWNSMLSMYSSIG 139
Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
+ +V FV L + P+K+TF +V+ C+ +V G IH ++I+ G++ + + G
Sbjct: 140 KPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGG 199
Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS--- 232
+L+D+Y K IS AR+VF+ + + N V WT + GY G EA VF+ M +
Sbjct: 200 ALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRP 259
Query: 233 -NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291
++++ +I +++G L+ AR LF EM +VV++ MI G+ K G T
Sbjct: 260 DHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETV--------- 310
Query: 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351
A++ F +M +V+ L S++SA V NLDL
Sbjct: 311 ----------------------AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348
Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
V + + + S +V ++LV M +KC M+ AA++FE + ++ V + +MI+G + +G
Sbjct: 349 VHAEAIKLGL-ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407
Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM------QNVYAIV 465
+ + LF M S G D+ FT +L+ C+ +E G +F + +N++
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFV-- 465
Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
+VD+ + G L+ A ++ M + + W ++G+
Sbjct: 466 -----GNALVDMYAKCGALEDARQIFERMCDRDNVT-WNTIIGS 503
Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 175/359 (48%), Gaps = 10/359 (2%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
+F + +P+ WN ++ G+ + F + + + T V+ A V +
Sbjct: 283 LFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVAN 342
Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
+ G +HA I+ G+ +++VG+SL+ +Y K +++ A KVF+ + E+N V W AMI G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402
Query: 212 YASVGDLVEAKTVF-DLMPERSNV---SWNALIGGLVKIGDLRSARQ----LFDEMPERN 263
YA G+ + +F D+ N+ ++ +L+ DL Q + + +N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462
Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
+ ++D YAK G + AR +FE DRD V W+ +I Y Q+ EA +F M
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522
Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
+ D L S + AC+ V L V + +D H ++L+DM +KCG +
Sbjct: 523 CGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRD-LHTGSSLIDMYSKCGIIK 581
Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442
A ++F ++P VVS ++I G S + +AV LF ML+ G+ P E+ F ++ AC
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYS-QNNLEEAVVLFQEMLTRGVNPSEITFATIVEAC 639
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 108/457 (23%), Positives = 199/457 (43%), Gaps = 45/457 (9%)
Query: 81 SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQ-NSRFIEVFTIFVRLIREEAVPDKYTF 139
S LSYS + RI + +L + Q + R +E+ +L + V D+
Sbjct: 18 SFVRRLSYSPDLGRRI-------YGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQ 70
Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
L L++R G A+H+ + G+D + +G +++DLY K ++S A K FD + E
Sbjct: 71 RLA-------LALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-E 122
Query: 200 RNVVSWTAMIVGYASVGD----LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255
++V +W +M+ Y+S+G L ++F+ + +++ ++ + ++ RQ+
Sbjct: 123 KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQI 182
Query: 256 FDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP 311
M ERN ++D YAK ++ AR +FE D + V W+ L SGY + G P
Sbjct: 183 HCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLP 242
Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA- 370
+EAV +F M + +PD V++++ ++G L D+ L M S V+A
Sbjct: 243 EEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLK-----DARLLFGEM--SSPDVVAW 295
Query: 371 -ALVDMNAKCGNMDRAAELFETMPNRDVVS----YCSMIKGLSIHGHGRQAVSLFDRMLS 425
++ + K G A E F M V S S++ + I + + + +
Sbjct: 296 NVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIK 355
Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
GL + + +++ S +E + FEA++ + + M+ G
Sbjct: 356 LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEE-----KNDVFWNAMIRGYAHNGESH 410
Query: 486 SAYELLNSMPVEPHA---SAWGALLGACKLYSDIELG 519
EL M + + +LL C D+E+G
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 447
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 197/584 (33%), Positives = 305/584 (52%), Gaps = 55/584 (9%)
Query: 39 SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTA---VFNR 95
+L L++ C + QV + I++ L D ++ I ++ P + A N
Sbjct: 36 QSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLI-FFSAITYPENLDLAKLLFLNF 94
Query: 96 IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
NPN F++NT++ S + E F ++ +IR PD+ TF ++KA S + V++
Sbjct: 95 TPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQ- 151
Query: 156 TAIHAAVIRWG-VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214
IH +I G + ++ SL+ Y + A KVF MP +V S+ MIVGYA
Sbjct: 152 --IHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAK 209
Query: 215 VGDLVEAKTVFDLM------PERSNV--------------------SW------------ 236
G +EA ++ M P+ V W
Sbjct: 210 QGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNL 269
Query: 237 ---NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293
NAL+ K + A++ FD M ++++ S+ TM+ G+ ++GDM +A+++F+ P R
Sbjct: 270 ILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKR 329
Query: 294 DVVAWSALISGYAQNGQPDEAVK-IFSDMC-SKNVQPDEFILVSLMSACSQVGNLDLSNW 351
D+V+W++L+ GY++ G V+ +F +M + V+PD +VSL+S + G L W
Sbjct: 330 DLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRW 389
Query: 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411
V + R + A + +AL+DM KCG ++RA +F+T +DV + SMI GL+ HG
Sbjct: 390 VHGLVIRLQLK-GDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHG 448
Query: 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY 471
+G+QA+ LF RM EG+TP+ V VLTACSH GLVE+G F M++ + P EHY
Sbjct: 449 NGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHY 508
Query: 472 ACMVDLLGRTGHLKSAYELLN-SMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530
+VDLL R G ++ A +++ MP+ P S WG++L AC+ DIE EL L +LE
Sbjct: 509 GSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLE 568
Query: 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
P+ G YVLLSNIYAT RW R M+ RG++K G SS+
Sbjct: 569 PEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/485 (35%), Positives = 278/485 (57%), Gaps = 37/485 (7%)
Query: 91 AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP-DKYTFPLVIKACSHV 149
++F+R+ N W ++ GY + F + F +F+R+ +E V + T ++ KAC
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288
Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
+ REG+ IH V R ++ D+F+G SL+ +Y K
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSK-------------------------- 322
Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
+G + EAK VF +M + +VSWN+LI GLV+ + A +LF++MP +++VS+T
Sbjct: 323 -----LGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTD 377
Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
MI G++ G+++ LF P++D + W+A+IS + NG +EA+ F M K V P+
Sbjct: 378 MIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPN 437
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAE 387
+ S++SA + + +L + + + ++ DLS V +LV M KCGN + A +
Sbjct: 438 SYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS---VQNSLVSMYCKCGNTNDAYK 494
Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
+F + ++VSY +MI G S +G G++A+ LF + S G P+ V F +L+AC HVG
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
V+ GW++F++M++ Y I P P+HYACMVDLLGR+G L A L+++MP +PH+ WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614
Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
A K + ++L EL A +L ELEP +A YV+LS +Y+ + D + + K + ++K
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674
Query: 568 IPGCS 572
PG S
Sbjct: 675 DPGSS 679
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/462 (23%), Positives = 211/462 (45%), Gaps = 58/462 (12%)
Query: 80 HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTF 139
H+ L + A+F ++ N + W ++ Y++N + + + +F + +P
Sbjct: 60 HARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVF------DEMP----- 108
Query: 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE 199
VR T+ +A + T++I + ++ A ++F ++PE
Sbjct: 109 ------------VRVTTSYNAMI------------TAMIK---NKCDLGKAYELFCDIPE 141
Query: 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--RSNVSWNALIGGLVKIGDLRSARQLFD 257
+N VS+ MI G+ G EA+ ++ P R +V+ N L+ G ++ G A ++F
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQ 201
Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317
M + VVS ++M+ GY K+G + ARSLF+ +R+V+ W+A+I GY + G ++ +
Sbjct: 202 GMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGL 261
Query: 318 FSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
F M + +V+ + L + AC + + +SR ++ + +L+ M
Sbjct: 262 FLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFD-LFLGNSLMSMY 320
Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
+K G M A +F M N+D VS+ S+I GL +A LF++M + D V++T
Sbjct: 321 SKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK----DMVSWT 376
Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YACMVDLLGRTGHLKSAYELLNSM 494
++ S G + F ++P ++ + M+ G+ + A + M
Sbjct: 377 DMIKGFSGKGEISKCVELF-------GMMPEKDNITWTAMISAFVSNGYYEEALCWFHKM 429
Query: 495 ---PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN 533
V P++ + ++L A +D+ G + R+ ++ N
Sbjct: 430 LQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 86 LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKA 145
+S +F + + W ++ + N + E F +++++E P+ YTF V+ A
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447
Query: 146 CSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205
+ + + EG IH V++ + D+ V SL+ +Y K + A K+F + E N+VS+
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507
Query: 206 TAMIVGYASVGDLVEAKTVFDLM----PERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261
MI GY+ G +A +F ++ E + V++ AL+ V +G + + F M
Sbjct: 508 NTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKS 567
Query: 262 RNVVS-----YTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALIS 303
+ Y M+D + G + A +L P + W +L+S
Sbjct: 568 SYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLS 615
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 179/539 (33%), Positives = 301/539 (55%), Gaps = 25/539 (4%)
Query: 52 HLHQVHSHIIKKGL--EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
HL Q+H ++ + + ++ + C + AT Y+ + ++ + LW++L+
Sbjct: 16 HLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIG 75
Query: 110 ----GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT--AIHAAVI 163
G + N R F + + R +P ++TFP ++KA V +R+ HA ++
Sbjct: 76 HFSGGITLNRRL--SFLAYRHMRRNGVIPSRHTFPPLLKA---VFKLRDSNPFQFHAHIV 130
Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223
++G+D D FV SLI Y A ++FD +++VV+WTAMI G+ G EA
Sbjct: 131 KFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMV 190
Query: 224 VFDLMPERSNVSWN-----ALIGGLVKIGDLRSARQLFDEMPER-----NVVSYTTMIDG 273
F M +++ V+ N +++ K+ D+R R + E +V ++++D
Sbjct: 191 YFVEM-KKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM 249
Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
Y K A+ +F+ P R+VV W+ALI+GY Q+ D+ + +F +M +V P+E L
Sbjct: 250 YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTL 309
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
S++SAC+ VG L V Y+ ++ ++++ L+D+ KCG ++ A +FE +
Sbjct: 310 SSVLSACAHVGALHRGRRVHCYMIKNSIEINTT-AGTTLIDLYVKCGCLEEAILVFERLH 368
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
++V ++ +MI G + HG+ R A LF MLS ++P+EV F VL+AC+H GLVE+G R
Sbjct: 369 EKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRR 428
Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
F +M+ + + P +HYACMVDL GR G L+ A L+ MP+EP WGAL G+C L+
Sbjct: 429 LFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLH 488
Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
D ELG+ A+R+ +L+P ++G Y LL+N+Y+ + W +V VR +MK++ + K PG S
Sbjct: 489 KDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFS 547
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 274/474 (57%), Gaps = 39/474 (8%)
Query: 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD 195
+ T V+++C ++ V +IHA +IR D+D FV LI + + A VF
Sbjct: 29 RKTLISVLRSCKNIAHV---PSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFS 85
Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLR----- 250
+ NV +TAMI G+ S G + +++ M S + N +I ++K DL+
Sbjct: 86 YVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREI 145
Query: 251 ------------------------------SARQLFDEMPERNVVSYTTMIDGYAKVGDM 280
+A+++FDEMP+R+ V+ T MI+ Y++ G +
Sbjct: 146 HAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFI 205
Query: 281 TSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340
A LF+ +D V W+A+I G +N + ++A+++F +M +NV +EF V ++SAC
Sbjct: 206 KEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSAC 265
Query: 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSY 400
S +G L+L WV S++ M+LS V AL++M ++CG+++ A +F M ++DV+SY
Sbjct: 266 SDLGALELGRWVHSFVENQRMELSN-FVGNALINMYSRCGDINEARRVFRVMRDKDVISY 324
Query: 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
+MI GL++HG +A++ F M++ G P++V +L ACSH GL++ G F +M+
Sbjct: 325 NTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKR 384
Query: 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGE 520
V+ + P EHY C+VDLLGR G L+ AY + ++P+EP G LL ACK++ ++ELGE
Sbjct: 385 VFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGE 444
Query: 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
+A RLFE E ++G+YVLLSN+YA++ +W + +R M++ G+ K PGCS++
Sbjct: 445 KIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/460 (26%), Positives = 225/460 (48%), Gaps = 46/460 (10%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
+++++ CK H+ +H+ II+ +QD +V I +C +L + + Y+ VF+ + NPN
Sbjct: 33 ISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDS-VDYAYDVFSYVSNPN 91
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
+L+ ++ G+ + R + +++ R+I +PD Y V+KAC ++ IHA
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHA 147
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
V++ G VG ++++YGK E+ A+K+FDEMP+R+ V+ T MI Y+ G + E
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKE 207
Query: 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY------------- 267
A +F + + V W A+I GLV+ ++ A +LF EM NV +
Sbjct: 208 ALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSD 267
Query: 268 --------------------------TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSAL 301
+I+ Y++ GD+ AR +F D+DV++++ +
Sbjct: 268 LGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTM 327
Query: 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361
ISG A +G EA+ F DM ++ +P++ LV+L++ACS G LD+ V + + R
Sbjct: 328 ISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFN 387
Query: 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLF 420
+ +VD+ + G ++ A E +P D + +++ IHG+ +
Sbjct: 388 VEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIA 447
Query: 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460
R+ E PD + ++ + G ++ E+M++
Sbjct: 448 KRLF-ESENPDSGTYVLLSNLYASSGKWKESTEIRESMRD 486
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 318 bits (815), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 284/491 (57%), Gaps = 8/491 (1%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
VFN I N W +++ GY +N E +F R+ + ++YT+ +I AC+ + +
Sbjct: 198 VFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSA 257
Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
+ +G H +++ G++ + TSL+D+Y K +IS AR+VF+E ++V WTAMIVG
Sbjct: 258 LHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVG 317
Query: 212 YASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDL---RSARQLFDEMPERNV 264
Y G + EA ++F M + + V+ +++ G I +L RS L ++ +
Sbjct: 318 YTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDT 377
Query: 265 VSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324
++ YAK A+ +FE ++D+VAW+++ISG++QNG EA+ +F M S+
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437
Query: 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSY-LSRSHMDLSRAHVIAALVDMNAKCGNMD 383
+V P+ + SL SAC+ +G+L + + + +Y + + S HV AL+D AKCG+
Sbjct: 438 SVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQ 497
Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
A +F+T+ ++ +++ +MI G G ++ LF+ ML + P+E FT +L+AC
Sbjct: 498 SARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACG 557
Query: 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW 503
H G+V +G ++F +M Y PS +HY CMVD+L R G L+ A +++ MP++P +
Sbjct: 558 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617
Query: 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563
GA L C ++S +LGE+V ++ +L P +A YVL+SN+YA+ RW VR+ MK+R
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677
Query: 564 GLRKIPGCSSL 574
GL KI G S++
Sbjct: 678 GLSKIAGHSTM 688
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 231/476 (48%), Gaps = 14/476 (2%)
Query: 43 LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
L+ KC L Q H + GL D S+ +SL + + VF++I P+ +
Sbjct: 50 LLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSL-YGFFGYTKDARLVFDQIPEPDFY 108
Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162
LW +L+ Y N +EV ++ L++ D F +KAC+ + + G IH +
Sbjct: 109 LWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQL 168
Query: 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222
++ ++V V T L+D+Y K EI A KVF+++ RNVV WT+MI GY E
Sbjct: 169 VKVPSFDNV-VLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGL 227
Query: 223 TVFDLMPER----SNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGY 274
+F+ M E + ++ LI K+ L + L E + T+++D Y
Sbjct: 228 VLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMY 287
Query: 275 AKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334
K GD+++AR +F D+V W+A+I GY NG +EA+ +F M ++P+ +
Sbjct: 288 VKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIA 347
Query: 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394
S++S C + NL+L V + + + +V ALV M AKC A +FE
Sbjct: 348 SVLSGCGLIENLELGRSVHGLSIK--VGIWDTNVANALVHMYAKCYQNRDAKYVFEMESE 405
Query: 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454
+D+V++ S+I G S +G +A+ LF RM SE +TP+ V + +AC+ +G + G
Sbjct: 406 KDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSL 465
Query: 455 FEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
+ + S H ++D + G +SA + +++ E + W A++G
Sbjct: 466 HAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIE-EKNTITWSAMIGG 520
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 170/317 (53%), Gaps = 14/317 (4%)
Query: 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER 200
L++ C+++ S+R+ H + G+ D+ + T L+ LYG AR VFD++PE
Sbjct: 49 LLLSKCTNIDSLRQS---HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLF 256
+ W M+ Y + VE ++DL+ + ++ ++ + ++ DL + +++
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165
Query: 257 DEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDE 313
++ P + V T ++D YAK G++ SA +F R+VV W+++I+GY +N +E
Sbjct: 166 CQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEE 225
Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373
+ +F+ M NV +E+ +L+ AC+++ L W L +S ++LS ++ +L+
Sbjct: 226 GLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSC-LVTSLL 284
Query: 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV 433
DM KCG++ A +F + D+V + +MI G + +G +A+SLF +M + P+ V
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344
Query: 434 AFTIVLTACSHVGLVED 450
VL+ C GL+E+
Sbjct: 345 TIASVLSGC---GLIEN 358
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/570 (31%), Positives = 293/570 (51%), Gaps = 32/570 (5%)
Query: 13 HKSCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSL- 71
H + +++LP C+ + P Q + QVH+ +K G + + L
Sbjct: 147 HVTFTTLLPGCNDAVP---------------------QNAVGQVHAFAVKLGFDTNPFLT 185
Query: 72 VAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131
V++ + + L + +F I ++ +NTL+ GY ++ + E +F+++ +
Sbjct: 186 VSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245
Query: 132 AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCAR 191
P +TF V+KA + G +HA + G D VG ++D Y K + R
Sbjct: 246 HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305
Query: 192 KVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIG 247
+FDEMPE + VS+ +I Y+ + F M +R N + ++ +
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS 365
Query: 248 DLRSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
L+ RQL + S +++D YAK A +F++ P R V+W+ALIS
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425
Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
GY Q G +K+F+ M N++ D+ +++ A + +L L + +++ RS +L
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-NL 484
Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
+ LVDM AKCG++ A ++FE MP+R+ VS+ ++I + +G G A+ F +M
Sbjct: 485 ENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM 544
Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
+ GL PD V+ VLTACSH G VE G +F+AM +Y I P +HYACM+DLLGR G
Sbjct: 545 IESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGR 604
Query: 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEP-QNAGSYVLLSN 542
A +L++ MP EP W ++L AC+++ + L E A +LF +E ++A +YV +SN
Sbjct: 605 FAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSN 664
Query: 543 IYATADRWLDVCLVRSKMKERGLRKIPGCS 572
IYA A W V V+ M+ERG++K+P S
Sbjct: 665 IYAAAGEWEKVRDVKKAMRERGIKKVPAYS 694
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 211/453 (46%), Gaps = 37/453 (8%)
Query: 80 HSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA--VPDKY 137
H +S + +F+ + + W L+ Y++NS F E F +F ++ R + +PD
Sbjct: 89 HVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHV 148
Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS--LIDLYGKRKEISCARKVFD 195
TF ++ C+ + +HA ++ G D + F+ S L+ Y + + + A +F+
Sbjct: 149 TFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFE 208
Query: 196 EMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRS 251
E+PE++ V++ +I GY G E+ +F M + S+ +++ ++ +V + D
Sbjct: 209 EIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFAL 268
Query: 252 ARQL----FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQ 307
+QL R+ ++D Y+K + R LF+ P+ D V+++ +IS Y+Q
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328
Query: 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367
Q + ++ F +M F +++S + + +L + + + D S H
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD-SILH 387
Query: 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427
V +LVDM AKC + A +F+++P R VS+ ++I G G + LF +M
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447
Query: 428 LTPDEVAFTIVLTACS-----------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476
L D+ F VL A + H ++ G ++NV++ + +VD
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-----NLENVFS-------GSGLVD 495
Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
+ + G +K A ++ MP + +A +W AL+ A
Sbjct: 496 MYAKCGSIKDAVQVFEEMP-DRNAVSWNALISA 527
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 9/229 (3%)
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
KT FD RSN ++ L++ G + +AR+++DEMP +N VS TMI G+ K GD++
Sbjct: 41 KTGFDTDTCRSNF----IVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVS 96
Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC--SKNVQPDEFILVSLMSA 339
SAR LF+A PDR VV W+ L+ YA+N DEA K+F MC S PD +L+
Sbjct: 97 SARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPG 156
Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIA-ALVDMNAKCGNMDRAAELFETMPNRDVV 398
C+ + V ++ + D + ++ L+ + +D A LFE +P +D V
Sbjct: 157 CNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSV 216
Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
++ ++I G G +++ LF +M G P + F+ VL A VGL
Sbjct: 217 TFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGL 263
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 169/396 (42%), Gaps = 48/396 (12%)
Query: 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217
+ A +I+ G D D +++ +R ++S ARKV+DEMP +N VS MI G+ GD
Sbjct: 35 VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94
Query: 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV------VSYTTMI 271
+ A+ +FD MP+R+ V+W L+G + A +LF +M + V++TT++
Sbjct: 95 VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154
Query: 272 DG-------------------------------------YAKVGDMTSARSLFEAAPDRD 294
G Y +V + A LFE P++D
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214
Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
V ++ LI+GY ++G E++ +F M QP +F ++ A + + L + +
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274
Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
LS + A V ++D +K + LF+ MP D VSY +I S
Sbjct: 275 -LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYE 333
Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA-C 473
++ F M G F +L+ +++ ++ G + Q + A S H
Sbjct: 334 ASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH--CQALLATADSILHVGNS 391
Query: 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
+VD+ + + A + S+P S W AL+
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALISG 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,342,156
Number of Sequences: 539616
Number of extensions: 8706546
Number of successful extensions: 28526
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 18676
Number of HSP's gapped (non-prelim): 2088
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)