Query 046956
Match_columns 574
No_of_seqs 644 out of 4025
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 06:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-81 4.4E-86 668.4 59.3 549 19-574 171-731 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7E-73 1.5E-77 602.9 57.7 523 40-568 89-624 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.3E-72 9.4E-77 582.8 53.6 476 98-574 84-568 (697)
4 PLN03218 maturation of RBCL 1; 100.0 7.4E-64 1.6E-68 522.7 57.1 495 66-570 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.7E-61 1.4E-65 499.0 46.8 431 31-466 120-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 3.6E-59 7.8E-64 487.6 54.6 476 86-567 353-880 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-33 3.1E-38 308.6 56.8 534 17-561 312-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-33 6.2E-38 306.2 56.3 540 15-566 276-869 (899)
9 PRK11447 cellulose synthase su 100.0 4.1E-24 8.9E-29 234.2 56.6 509 41-562 119-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-23 2.3E-28 231.0 56.1 516 41-564 35-701 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 2.3E-25 5.1E-30 206.9 34.6 439 104-553 51-509 (966)
12 PRK09782 bacteriophage N4 rece 99.9 2.4E-21 5.3E-26 202.8 57.0 500 48-565 58-708 (987)
13 PRK09782 bacteriophage N4 rece 99.9 9.5E-22 2.1E-26 205.9 52.3 468 80-565 160-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1E-22 2.3E-27 189.5 27.6 416 140-565 52-487 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-21 6.8E-26 198.8 40.3 250 308-563 307-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 8.2E-21 1.8E-25 186.1 30.2 296 270-571 41-355 (389)
17 KOG2002 TPR-containing nuclear 99.9 2.7E-18 5.8E-23 168.8 41.5 475 85-566 251-801 (1018)
18 PRK10049 pgaA outer membrane p 99.9 3.4E-18 7.3E-23 179.5 44.2 397 105-535 19-462 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-18 4.7E-23 177.8 42.0 418 104-535 130-577 (615)
20 PRK15174 Vi polysaccharide exp 99.9 6.3E-19 1.4E-23 181.0 37.4 323 205-534 45-386 (656)
21 KOG2002 TPR-containing nuclear 99.9 2.2E-18 4.9E-23 169.3 36.6 509 49-565 179-747 (1018)
22 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.2E-23 177.4 38.1 346 214-566 17-384 (656)
23 PRK10049 pgaA outer membrane p 99.9 4.5E-18 9.8E-23 178.5 41.5 394 135-565 14-458 (765)
24 PRK11788 tetratricopeptide rep 99.9 1.2E-18 2.6E-23 170.8 31.9 228 298-529 110-347 (389)
25 PRK14574 hmsH outer membrane p 99.8 1.8E-16 3.8E-21 163.3 44.7 433 79-537 43-521 (822)
26 PRK14574 hmsH outer membrane p 99.8 7.9E-16 1.7E-20 158.5 44.7 429 109-566 42-516 (822)
27 KOG2003 TPR repeat-containing 99.8 2.4E-16 5.3E-21 142.2 32.4 437 107-549 207-709 (840)
28 KOG0495 HAT repeat protein [RN 99.8 1.1E-14 2.3E-19 137.5 43.0 498 54-573 366-888 (913)
29 KOG1915 Cell cycle control pro 99.8 4.8E-13 1E-17 121.9 42.5 479 78-561 81-623 (677)
30 KOG0495 HAT repeat protein [RN 99.7 2.2E-12 4.9E-17 122.2 46.9 428 121-565 366-848 (913)
31 KOG0547 Translocase of outer m 99.7 1.8E-14 4E-19 131.6 30.8 215 340-561 336-564 (606)
32 KOG2076 RNA polymerase III tra 99.7 9.9E-13 2.2E-17 129.4 42.1 313 79-396 149-513 (895)
33 KOG4422 Uncharacterized conser 99.7 1E-12 2.2E-17 118.4 37.1 410 40-494 122-587 (625)
34 PF13429 TPR_15: Tetratricopep 99.7 7.3E-17 1.6E-21 149.6 11.6 257 301-562 14-276 (280)
35 KOG1155 Anaphase-promoting com 99.7 2.6E-13 5.7E-18 123.3 31.7 318 241-562 172-494 (559)
36 KOG1915 Cell cycle control pro 99.7 6.3E-13 1.4E-17 121.1 33.8 392 172-569 74-506 (677)
37 KOG2076 RNA polymerase III tra 99.7 2.1E-13 4.6E-18 133.9 32.3 352 210-573 147-522 (895)
38 KOG4422 Uncharacterized conser 99.7 3.8E-12 8.2E-17 114.7 37.4 415 101-532 116-593 (625)
39 KOG1155 Anaphase-promoting com 99.7 5.4E-13 1.2E-17 121.3 31.0 352 200-562 162-535 (559)
40 KOG2003 TPR repeat-containing 99.6 6E-14 1.3E-18 127.0 22.4 202 274-482 500-708 (840)
41 KOG1126 DNA-binding cell divis 99.6 6.5E-14 1.4E-18 133.3 23.6 279 279-567 334-624 (638)
42 KOG2047 mRNA splicing factor [ 99.6 3.3E-10 7.1E-15 107.6 44.7 480 61-550 130-710 (835)
43 KOG1126 DNA-binding cell divis 99.6 7.6E-14 1.6E-18 132.8 20.1 248 308-564 332-587 (638)
44 PRK10747 putative protoheme IX 99.6 1.9E-12 4E-17 125.7 29.7 275 277-562 97-389 (398)
45 KOG1173 Anaphase-promoting com 99.6 4.5E-11 9.7E-16 111.9 35.7 262 294-562 243-517 (611)
46 KOG0547 Translocase of outer m 99.6 6.9E-11 1.5E-15 108.6 34.6 404 104-532 118-569 (606)
47 PRK10747 putative protoheme IX 99.6 1.3E-11 2.8E-16 119.8 32.2 280 215-529 97-390 (398)
48 COG2956 Predicted N-acetylgluc 99.5 7.8E-12 1.7E-16 108.8 25.2 158 409-569 192-353 (389)
49 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.5E-16 117.6 33.2 222 302-528 160-398 (409)
50 PF13429 TPR_15: Tetratricopep 99.5 2.5E-14 5.4E-19 132.6 10.5 252 269-529 13-277 (280)
51 TIGR00540 hemY_coli hemY prote 99.5 2.4E-11 5.2E-16 118.7 30.5 282 274-562 94-398 (409)
52 KOG1173 Anaphase-promoting com 99.5 1.5E-10 3.3E-15 108.5 31.9 280 261-545 241-534 (611)
53 COG2956 Predicted N-acetylgluc 99.5 5.2E-11 1.1E-15 103.7 25.5 208 216-425 49-277 (389)
54 KOG4318 Bicoid mRNA stability 99.5 8.5E-10 1.8E-14 108.7 36.1 475 54-567 10-598 (1088)
55 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.7E-16 110.9 23.4 195 368-563 33-232 (234)
56 KOG2376 Signal recognition par 99.5 3.1E-09 6.7E-14 100.4 37.0 437 108-559 19-516 (652)
57 KOG3785 Uncharacterized conser 99.5 1.7E-09 3.8E-14 95.5 32.3 428 82-532 34-493 (557)
58 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.4E-14 98.7 31.3 280 215-529 97-390 (400)
59 KOG4162 Predicted calmodulin-b 99.4 1.3E-09 2.8E-14 106.1 33.5 397 160-564 312-784 (799)
60 COG3071 HemY Uncharacterized e 99.4 4E-10 8.6E-15 101.5 27.5 276 277-561 97-388 (400)
61 KOG2047 mRNA splicing factor [ 99.4 2.6E-08 5.6E-13 95.1 40.3 484 69-562 102-686 (835)
62 KOG4318 Bicoid mRNA stability 99.4 6.9E-10 1.5E-14 109.3 27.9 246 122-381 11-286 (1088)
63 KOG1840 Kinesin light chain [C 99.4 1.2E-10 2.6E-15 112.4 22.4 194 368-561 243-477 (508)
64 KOG1129 TPR repeat-containing 99.4 5E-11 1.1E-15 103.9 17.2 226 334-565 227-460 (478)
65 PRK12370 invasion protein regu 99.4 7.1E-10 1.5E-14 112.6 27.8 241 310-564 276-536 (553)
66 COG3063 PilF Tfp pilus assembl 99.3 1.4E-10 2.9E-15 96.6 17.8 161 400-564 38-203 (250)
67 KOG1174 Anaphase-promoting com 99.3 2E-08 4.4E-13 90.8 32.6 276 261-543 229-514 (564)
68 KOG3785 Uncharacterized conser 99.3 2.4E-09 5.2E-14 94.7 26.1 416 71-504 58-498 (557)
69 KOG1174 Anaphase-promoting com 99.3 5.2E-08 1.1E-12 88.2 33.3 384 173-566 99-503 (564)
70 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 99.3 23.5 200 295-530 31-233 (234)
71 PRK11189 lipoprotein NlpI; Pro 99.3 2.9E-10 6.4E-15 105.6 19.9 233 307-548 38-285 (296)
72 KOG1129 TPR repeat-containing 99.3 8.9E-11 1.9E-15 102.3 14.6 236 299-540 227-469 (478)
73 PRK12370 invasion protein regu 99.3 5.8E-10 1.3E-14 113.3 22.3 209 345-562 276-501 (553)
74 PF13041 PPR_2: PPR repeat fam 99.3 7.9E-12 1.7E-16 80.9 5.7 50 99-148 1-50 (50)
75 PRK11189 lipoprotein NlpI; Pro 99.2 6.8E-09 1.5E-13 96.5 25.0 212 345-565 41-267 (296)
76 KOG1156 N-terminal acetyltrans 99.2 1.1E-07 2.3E-12 91.3 32.3 93 473-565 376-470 (700)
77 PF13041 PPR_2: PPR repeat fam 99.2 4.5E-11 9.8E-16 77.3 6.9 50 395-444 1-50 (50)
78 PF12569 NARP1: NMDA receptor- 99.2 6.3E-08 1.4E-12 95.2 31.4 127 266-393 196-332 (517)
79 KOG4162 Predicted calmodulin-b 99.2 8.1E-08 1.8E-12 93.9 30.6 132 399-535 652-789 (799)
80 KOG1840 Kinesin light chain [C 99.2 4.2E-09 9.1E-14 102.0 21.6 234 266-528 201-478 (508)
81 KOG1156 N-terminal acetyltrans 99.2 7.1E-07 1.5E-11 85.8 35.5 181 109-292 49-247 (700)
82 COG3063 PilF Tfp pilus assembl 99.2 1.4E-08 3.1E-13 84.8 21.2 166 368-535 71-242 (250)
83 KOG2376 Signal recognition par 99.2 3.8E-07 8.3E-12 86.6 32.6 414 143-565 19-489 (652)
84 KOG3616 Selective LIM binding 99.2 1.5E-07 3.2E-12 91.4 30.3 105 341-455 743-847 (1636)
85 KOG0548 Molecular co-chaperone 99.2 1.5E-07 3.3E-12 88.4 29.6 239 298-547 227-473 (539)
86 KOG1127 TPR repeat-containing 99.2 6.1E-08 1.3E-12 97.2 28.3 502 54-562 476-1103(1238)
87 KOG3616 Selective LIM binding 99.1 4.1E-07 8.9E-12 88.4 32.1 428 83-564 544-1025(1636)
88 PF12569 NARP1: NMDA receptor- 99.1 1.3E-07 2.8E-12 93.0 28.8 283 272-561 12-332 (517)
89 KOG0985 Vesicle coat protein c 99.1 3.2E-06 6.9E-11 85.3 37.9 310 200-545 982-1324(1666)
90 KOG0548 Molecular co-chaperone 99.1 1.9E-08 4.2E-13 94.2 21.5 218 333-565 227-457 (539)
91 KOG4340 Uncharacterized conser 99.1 1.1E-07 2.4E-12 82.4 23.9 407 139-562 13-442 (459)
92 KOG3617 WD40 and TPR repeat-co 99.1 9.8E-07 2.1E-11 86.9 33.1 319 68-423 725-1106(1416)
93 KOG0624 dsRNA-activated protei 99.1 1.7E-07 3.7E-12 82.9 23.8 186 238-425 43-251 (504)
94 KOG1125 TPR repeat-containing 99.1 5.4E-09 1.2E-13 98.7 15.5 214 342-562 297-526 (579)
95 PF04733 Coatomer_E: Coatomer 99.0 3.2E-08 7E-13 90.5 19.5 250 274-535 11-271 (290)
96 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.6E-11 84.8 31.2 297 264-564 6-337 (355)
97 KOG0624 dsRNA-activated protei 99.0 2.9E-07 6.3E-12 81.4 23.6 187 301-494 161-367 (504)
98 PF04733 Coatomer_E: Coatomer 99.0 8.4E-09 1.8E-13 94.3 14.8 247 302-564 8-266 (290)
99 TIGR03302 OM_YfiO outer membra 99.0 4.3E-08 9.3E-13 88.5 18.4 178 368-564 35-233 (235)
100 KOG1127 TPR repeat-containing 99.0 1.7E-06 3.7E-11 87.2 29.5 435 117-561 474-994 (1238)
101 PRK10370 formate-dependent nit 99.0 9.1E-08 2E-12 82.6 18.0 120 445-566 52-176 (198)
102 KOG3617 WD40 and TPR repeat-co 98.9 2.5E-05 5.4E-10 77.4 35.0 245 91-357 716-994 (1416)
103 PRK04841 transcriptional regul 98.9 5.2E-06 1.1E-10 91.2 35.0 357 208-564 347-761 (903)
104 KOG4340 Uncharacterized conser 98.9 3E-06 6.5E-11 73.7 24.8 287 82-393 22-337 (459)
105 KOG1070 rRNA processing protei 98.9 2.9E-07 6.4E-12 95.6 20.6 208 353-566 1447-1666(1710)
106 PRK15359 type III secretion sy 98.9 1.2E-07 2.7E-12 77.3 14.8 122 418-545 14-137 (144)
107 PRK15359 type III secretion sy 98.8 1.4E-07 3.1E-12 77.0 13.6 108 453-565 14-123 (144)
108 PLN02789 farnesyltranstransfer 98.8 2.6E-06 5.7E-11 79.1 23.3 186 373-561 78-300 (320)
109 cd05804 StaR_like StaR_like; a 98.8 3.1E-05 6.7E-10 75.0 32.0 192 103-323 8-214 (355)
110 COG5010 TadD Flp pilus assembl 98.8 6.8E-07 1.5E-11 76.7 16.9 159 396-558 66-226 (257)
111 PRK04841 transcriptional regul 98.8 0.00067 1.5E-08 74.7 45.8 354 178-532 348-763 (903)
112 KOG0985 Vesicle coat protein c 98.7 0.00042 9.2E-09 70.7 45.2 142 397-559 1104-1245(1666)
113 KOG1125 TPR repeat-containing 98.7 6.8E-07 1.5E-11 84.9 17.3 254 273-556 294-564 (579)
114 KOG1070 rRNA processing protei 98.7 2E-06 4.4E-11 89.7 22.0 222 232-454 1457-1693(1710)
115 KOG1914 mRNA cleavage and poly 98.7 0.00025 5.4E-09 67.4 34.4 174 382-558 347-534 (656)
116 KOG3081 Vesicle coat complex C 98.7 2.3E-05 5E-10 67.4 23.8 250 274-535 18-277 (299)
117 PRK10370 formate-dependent nit 98.7 2.6E-06 5.6E-11 73.6 18.3 156 372-538 22-182 (198)
118 KOG1128 Uncharacterized conser 98.7 1.1E-06 2.3E-11 85.9 17.0 209 336-563 404-616 (777)
119 COG5010 TadD Flp pilus assembl 98.7 3.6E-06 7.9E-11 72.3 17.8 160 362-525 63-227 (257)
120 PRK15179 Vi polysaccharide bio 98.7 4.3E-06 9.4E-11 85.7 21.7 131 396-530 85-218 (694)
121 PRK15363 pathogenicity island 98.6 3.5E-07 7.7E-12 73.0 10.5 98 467-564 34-133 (157)
122 PRK14720 transcript cleavage f 98.6 1.2E-05 2.6E-10 83.3 24.1 239 262-552 29-273 (906)
123 KOG3060 Uncharacterized conser 98.6 1.4E-05 3E-10 68.2 20.0 169 368-539 54-230 (289)
124 KOG1914 mRNA cleavage and poly 98.6 0.00054 1.2E-08 65.2 32.4 130 66-199 17-165 (656)
125 PRK15179 Vi polysaccharide bio 98.6 1.1E-05 2.4E-10 82.8 23.4 123 368-494 88-214 (694)
126 PLN02789 farnesyltranstransfer 98.6 1E-05 2.2E-10 75.3 20.8 194 368-564 39-251 (320)
127 TIGR02552 LcrH_SycD type III s 98.6 1.1E-06 2.4E-11 71.5 12.2 100 434-535 19-120 (135)
128 KOG1128 Uncharacterized conser 98.6 2.6E-06 5.6E-11 83.3 16.2 182 368-564 400-583 (777)
129 PF12854 PPR_1: PPR repeat 98.6 7.4E-08 1.6E-12 55.7 3.4 32 166-197 2-33 (34)
130 TIGR03302 OM_YfiO outer membra 98.6 5.2E-06 1.1E-10 74.9 17.3 184 327-531 30-234 (235)
131 KOG3060 Uncharacterized conser 98.5 1.1E-05 2.4E-10 68.7 17.3 163 399-565 54-222 (289)
132 KOG3081 Vesicle coat complex C 98.5 4.5E-05 9.7E-10 65.7 20.5 219 266-494 43-268 (299)
133 COG4783 Putative Zn-dependent 98.5 1.7E-05 3.7E-10 74.3 19.4 108 442-551 316-425 (484)
134 TIGR02552 LcrH_SycD type III s 98.5 6E-06 1.3E-10 67.1 14.1 109 454-565 5-116 (135)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.2E-06 9E-11 79.3 14.3 122 435-561 172-295 (395)
136 COG4783 Putative Zn-dependent 98.5 7.5E-05 1.6E-09 70.2 21.8 145 371-534 311-460 (484)
137 PF12854 PPR_1: PPR repeat 98.4 3.1E-07 6.6E-12 53.1 3.9 32 463-494 2-33 (34)
138 KOG2053 Mitochondrial inherita 98.4 0.0035 7.6E-08 63.6 34.4 67 502-568 438-507 (932)
139 PF07079 DUF1347: Protein of u 98.4 0.0025 5.4E-08 59.6 32.6 73 489-562 445-523 (549)
140 KOG0553 TPR repeat-containing 98.3 6E-06 1.3E-10 72.5 10.8 92 407-503 91-185 (304)
141 PRK14720 transcript cleavage f 98.3 6.2E-05 1.3E-09 78.2 19.7 210 325-566 25-255 (906)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.8E-05 6.1E-10 73.7 15.7 127 368-497 171-297 (395)
143 PF13414 TPR_11: TPR repeat; P 98.3 2.4E-06 5.2E-11 59.8 6.5 66 499-564 2-68 (69)
144 PF09976 TPR_21: Tetratricopep 98.3 4E-05 8.8E-10 62.9 14.5 85 474-559 54-143 (145)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.4E-05 3E-10 63.3 11.3 101 435-535 5-111 (119)
146 PF12895 Apc3: Anaphase-promot 98.2 1.7E-06 3.8E-11 63.2 4.8 78 481-559 2-83 (84)
147 cd00189 TPR Tetratricopeptide 98.2 1.7E-05 3.7E-10 59.8 10.2 94 471-564 3-98 (100)
148 KOG2053 Mitochondrial inherita 98.2 0.01 2.2E-07 60.5 37.9 196 56-257 32-250 (932)
149 PF09976 TPR_21: Tetratricopep 98.2 0.00015 3.3E-09 59.5 16.1 126 399-527 14-145 (145)
150 PF13432 TPR_16: Tetratricopep 98.2 4.5E-06 9.7E-11 57.6 5.9 60 506-565 3-62 (65)
151 COG4235 Cytochrome c biogenesi 98.2 3.9E-05 8.5E-10 68.0 12.8 110 463-572 151-265 (287)
152 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.5E-05 7.6E-10 60.9 11.7 97 469-565 3-107 (119)
153 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.1E-11 49.3 4.3 34 103-136 2-35 (35)
154 COG4700 Uncharacterized protei 98.1 0.00033 7.3E-09 56.9 15.8 135 428-564 85-223 (251)
155 PLN03088 SGT1, suppressor of 98.1 1.9E-05 4.2E-10 75.3 9.8 108 438-547 8-117 (356)
156 PF13812 PPR_3: Pentatricopept 98.1 7.4E-06 1.6E-10 47.8 4.1 33 102-134 2-34 (34)
157 PLN03088 SGT1, suppressor of 98.1 0.0001 2.2E-09 70.4 14.1 101 403-507 8-110 (356)
158 PRK02603 photosystem I assembl 98.1 6.9E-05 1.5E-09 63.6 11.7 95 470-564 37-150 (172)
159 PRK10153 DNA-binding transcrip 98.0 0.00022 4.7E-09 71.2 16.5 140 394-535 334-488 (517)
160 KOG0550 Molecular chaperone (D 98.0 0.00017 3.6E-09 66.2 14.1 268 270-566 55-353 (486)
161 KOG1130 Predicted G-alpha GTPa 98.0 7.4E-05 1.6E-09 68.3 11.3 127 434-560 197-341 (639)
162 PF14559 TPR_19: Tetratricopep 98.0 9.5E-06 2.1E-10 56.6 4.6 55 511-565 2-56 (68)
163 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.7E-10 47.2 4.4 33 399-431 2-34 (35)
164 KOG0553 TPR repeat-containing 98.0 2.9E-05 6.3E-10 68.3 8.2 112 438-551 87-200 (304)
165 CHL00033 ycf3 photosystem I as 98.0 9.2E-05 2E-09 62.6 11.2 92 468-559 35-138 (168)
166 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.2E-10 46.5 4.0 33 296-328 2-34 (34)
167 PF05843 Suf: Suppressor of fo 97.9 0.00037 8E-09 64.1 15.1 136 398-536 2-143 (280)
168 PF13371 TPR_9: Tetratricopept 97.9 3.4E-05 7.3E-10 54.7 6.6 58 508-565 3-60 (73)
169 cd00189 TPR Tetratricopeptide 97.9 0.00015 3.3E-09 54.4 10.5 90 440-531 8-99 (100)
170 PRK15331 chaperone protein Sic 97.9 0.00017 3.6E-09 58.2 10.2 91 472-562 41-133 (165)
171 PRK02603 photosystem I assembl 97.9 0.00063 1.4E-08 57.7 14.4 131 396-549 34-166 (172)
172 PF13432 TPR_16: Tetratricopep 97.9 7.1E-05 1.5E-09 51.5 7.0 61 474-534 3-65 (65)
173 PF12895 Apc3: Anaphase-promot 97.9 6.1E-05 1.3E-09 55.0 6.8 80 410-493 2-83 (84)
174 PRK10153 DNA-binding transcrip 97.8 0.00081 1.8E-08 67.2 16.2 135 427-565 332-484 (517)
175 COG3898 Uncharacterized membra 97.8 0.031 6.7E-07 51.5 28.1 272 277-563 97-392 (531)
176 PF04840 Vps16_C: Vps16, C-ter 97.8 0.035 7.6E-07 51.8 24.9 46 173-223 2-47 (319)
177 CHL00033 ycf3 photosystem I as 97.7 0.0023 5E-08 54.1 15.7 81 397-479 35-117 (168)
178 PF13431 TPR_17: Tetratricopep 97.7 2.4E-05 5.2E-10 45.1 2.4 33 522-554 1-33 (34)
179 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8E-10 43.6 3.3 30 102-131 1-30 (31)
180 PRK15363 pathogenicity island 97.7 0.0029 6.4E-08 51.0 14.9 94 369-463 38-134 (157)
181 PF14938 SNAP: Soluble NSF att 97.7 0.0046 1E-07 57.2 18.8 21 301-321 41-61 (282)
182 KOG1130 Predicted G-alpha GTPa 97.7 0.0014 3E-08 60.3 13.9 125 368-492 197-339 (639)
183 PRK10803 tol-pal system protei 97.7 0.00042 9.1E-09 62.5 10.6 92 443-534 154-251 (263)
184 COG3898 Uncharacterized membra 97.7 0.042 9.2E-07 50.7 22.8 257 297-561 84-356 (531)
185 PRK10866 outer membrane biogen 97.6 0.011 2.4E-07 52.9 19.0 173 371-562 37-240 (243)
186 KOG0550 Molecular chaperone (D 97.6 0.027 5.8E-07 52.3 21.1 262 179-461 57-350 (486)
187 PF14559 TPR_19: Tetratricopep 97.6 9.2E-05 2E-09 51.5 4.6 56 444-501 3-59 (68)
188 PF05843 Suf: Suppressor of fo 97.6 0.00079 1.7E-08 62.0 11.8 129 433-563 2-136 (280)
189 PF04840 Vps16_C: Vps16, C-ter 97.6 0.047 1E-06 50.9 23.1 107 173-287 179-285 (319)
190 PF01535 PPR: PPR repeat; Int 97.6 9.5E-05 2.1E-09 41.8 3.4 30 399-428 2-31 (31)
191 PF13414 TPR_11: TPR repeat; P 97.6 0.00022 4.9E-09 49.7 6.0 65 467-531 2-69 (69)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.0015 3.3E-08 50.7 10.7 53 505-557 43-98 (120)
193 PF08579 RPM2: Mitochondrial r 97.5 0.00096 2.1E-08 49.6 8.6 80 104-183 28-116 (120)
194 PF14938 SNAP: Soluble NSF att 97.5 0.0053 1.1E-07 56.8 15.8 117 434-551 116-251 (282)
195 PF13428 TPR_14: Tetratricopep 97.5 0.00026 5.6E-09 43.9 4.6 42 501-542 2-43 (44)
196 KOG2796 Uncharacterized conser 97.5 0.01 2.3E-07 51.4 15.4 136 399-534 179-320 (366)
197 PF13281 DUF4071: Domain of un 97.5 0.024 5.1E-07 53.3 19.0 164 368-534 143-339 (374)
198 KOG2041 WD40 repeat protein [G 97.4 0.15 3.3E-06 50.8 28.3 231 168-425 689-951 (1189)
199 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.11 2.5E-06 48.9 30.4 134 397-533 397-535 (660)
200 PRK10803 tol-pal system protei 97.4 0.0035 7.7E-08 56.6 13.0 97 469-565 144-248 (263)
201 KOG1258 mRNA processing protei 97.4 0.15 3.2E-06 50.2 29.7 178 368-548 299-489 (577)
202 PF12688 TPR_5: Tetratrico pep 97.4 0.0046 9.9E-08 48.0 11.9 91 403-493 7-100 (120)
203 COG4235 Cytochrome c biogenesi 97.4 0.011 2.4E-07 52.8 15.4 106 429-536 153-263 (287)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00085 1.8E-08 63.6 9.0 63 467-529 74-141 (453)
205 PF08579 RPM2: Mitochondrial r 97.4 0.0036 7.8E-08 46.7 10.0 79 401-480 29-116 (120)
206 KOG2280 Vacuolar assembly/sort 97.4 0.21 4.5E-06 50.4 29.5 84 143-227 444-532 (829)
207 PF13424 TPR_12: Tetratricopep 97.4 0.00042 9.2E-09 49.7 5.2 62 501-562 6-74 (78)
208 PF13371 TPR_9: Tetratricopept 97.3 0.00092 2E-08 47.2 6.6 67 475-541 2-70 (73)
209 KOG1538 Uncharacterized conser 97.3 0.02 4.2E-07 56.2 17.1 100 218-322 732-844 (1081)
210 PF06239 ECSIT: Evolutionarily 97.2 0.0053 1.2E-07 52.0 10.9 98 386-484 34-154 (228)
211 KOG0543 FKBP-type peptidyl-pro 97.2 0.0041 8.9E-08 57.7 11.0 95 469-563 258-355 (397)
212 PRK10866 outer membrane biogen 97.2 0.13 2.8E-06 46.2 20.5 62 300-362 37-101 (243)
213 PF13525 YfiO: Outer membrane 97.2 0.038 8.2E-07 48.2 16.7 165 371-554 10-198 (203)
214 PF10037 MRP-S27: Mitochondria 97.2 0.0062 1.3E-07 58.5 12.0 118 325-443 61-184 (429)
215 PF09205 DUF1955: Domain of un 97.2 0.043 9.4E-07 42.2 13.9 141 407-566 12-152 (161)
216 COG4700 Uncharacterized protei 97.1 0.11 2.3E-06 42.9 17.3 86 372-459 95-187 (251)
217 PF13512 TPR_18: Tetratricopep 97.1 0.014 3.1E-07 46.2 11.7 91 473-563 15-128 (142)
218 PF10037 MRP-S27: Mitochondria 97.1 0.0058 1.3E-07 58.7 11.4 70 105-174 107-176 (429)
219 KOG2041 WD40 repeat protein [G 97.1 0.37 8E-06 48.2 30.6 213 85-321 678-904 (1189)
220 PF06239 ECSIT: Evolutionarily 97.1 0.0035 7.5E-08 53.1 8.4 70 117-186 68-153 (228)
221 KOG1538 Uncharacterized conser 97.1 0.052 1.1E-06 53.4 17.1 39 119-160 618-656 (1081)
222 PF03704 BTAD: Bacterial trans 96.9 0.021 4.5E-07 46.9 12.0 60 502-561 64-123 (146)
223 PF13525 YfiO: Outer membrane 96.9 0.052 1.1E-06 47.4 14.9 140 403-563 11-170 (203)
224 COG3118 Thioredoxin domain-con 96.8 0.078 1.7E-06 47.4 14.9 120 441-563 143-265 (304)
225 PRK11906 transcriptional regul 96.8 0.085 1.8E-06 50.6 16.0 143 413-558 274-431 (458)
226 PF13424 TPR_12: Tetratricopep 96.8 0.0025 5.4E-08 45.6 4.8 60 470-529 7-75 (78)
227 KOG0543 FKBP-type peptidyl-pro 96.8 0.006 1.3E-07 56.6 7.9 66 500-565 257-322 (397)
228 KOG0890 Protein kinase of the 96.8 1.7 3.7E-05 50.4 29.5 312 238-566 1388-1734(2382)
229 PRK11906 transcriptional regul 96.7 0.037 8E-07 53.0 13.1 119 447-565 273-403 (458)
230 KOG2610 Uncharacterized conser 96.7 0.041 8.8E-07 49.7 12.2 157 410-569 116-282 (491)
231 COG1729 Uncharacterized protei 96.6 0.017 3.7E-07 51.0 9.3 99 435-536 145-251 (262)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.02 4.3E-07 54.6 10.1 60 432-494 75-138 (453)
233 PF13281 DUF4071: Domain of un 96.6 0.32 6.8E-06 46.0 17.8 165 399-564 143-335 (374)
234 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.76 1.6E-05 43.7 29.1 411 66-494 39-528 (660)
235 COG0457 NrfG FOG: TPR repeat [ 96.5 0.57 1.2E-05 41.8 27.1 220 309-532 37-268 (291)
236 KOG2114 Vacuolar assembly/sort 96.5 1.3 2.8E-05 45.7 25.0 54 474-528 711-764 (933)
237 KOG4555 TPR repeat-containing 96.4 0.042 9E-07 42.2 9.0 90 441-532 52-147 (175)
238 COG1729 Uncharacterized protei 96.4 0.047 1E-06 48.3 10.6 83 411-494 155-241 (262)
239 KOG2796 Uncharacterized conser 96.4 0.63 1.4E-05 40.9 22.7 129 436-565 181-317 (366)
240 KOG2610 Uncharacterized conser 96.4 0.047 1E-06 49.3 10.5 116 443-560 114-235 (491)
241 KOG1585 Protein required for f 96.3 0.33 7.1E-06 42.1 14.9 86 471-557 153-250 (308)
242 COG3118 Thioredoxin domain-con 96.3 0.61 1.3E-05 41.9 17.1 151 405-557 142-295 (304)
243 KOG1941 Acetylcholine receptor 96.3 0.13 2.8E-06 47.1 13.0 46 305-350 16-63 (518)
244 COG0457 NrfG FOG: TPR repeat [ 96.3 0.79 1.7E-05 40.8 25.5 195 368-564 61-266 (291)
245 KOG1941 Acetylcholine receptor 96.2 0.39 8.4E-06 44.2 15.7 23 536-558 333-355 (518)
246 PF04184 ST7: ST7 protein; In 96.2 0.14 3.1E-06 49.2 13.5 53 508-560 267-321 (539)
247 PF10300 DUF3808: Protein of u 96.2 0.31 6.8E-06 48.6 16.8 158 402-562 193-375 (468)
248 PF13512 TPR_18: Tetratricopep 96.1 0.21 4.5E-06 39.8 12.0 21 516-536 115-135 (142)
249 PRK15331 chaperone protein Sic 96.1 0.15 3.3E-06 41.5 11.4 84 408-494 48-131 (165)
250 PF07719 TPR_2: Tetratricopept 96.1 0.021 4.5E-07 32.8 5.0 32 502-533 3-34 (34)
251 PF00515 TPR_1: Tetratricopept 96.1 0.016 3.4E-07 33.4 4.3 32 501-532 2-33 (34)
252 COG4785 NlpI Lipoprotein NlpI, 96.1 0.52 1.1E-05 40.1 14.4 161 397-565 99-268 (297)
253 PF12921 ATP13: Mitochondrial 96.0 0.11 2.4E-06 40.8 10.3 49 428-476 48-96 (126)
254 KOG4234 TPR repeat-containing 96.0 0.026 5.5E-07 47.0 6.8 102 439-542 102-210 (271)
255 PF03704 BTAD: Bacterial trans 96.0 0.085 1.8E-06 43.2 10.2 72 399-471 64-139 (146)
256 PF07079 DUF1347: Protein of u 95.9 1.7 3.6E-05 41.6 34.8 443 43-504 15-529 (549)
257 KOG1258 mRNA processing protei 95.9 2 4.4E-05 42.6 25.2 29 295-323 151-179 (577)
258 COG4105 ComL DNA uptake lipopr 95.8 1.2 2.7E-05 39.3 18.3 167 375-561 43-231 (254)
259 PF04053 Coatomer_WDAD: Coatom 95.7 0.45 9.8E-06 46.8 14.9 130 180-324 270-402 (443)
260 KOG2280 Vacuolar assembly/sort 95.6 3 6.6E-05 42.6 32.3 78 439-524 691-768 (829)
261 KOG4555 TPR repeat-containing 95.5 0.15 3.3E-06 39.3 8.4 88 405-494 51-141 (175)
262 PF10300 DUF3808: Protein of u 95.4 0.25 5.3E-06 49.3 12.4 145 416-564 176-335 (468)
263 PF04184 ST7: ST7 protein; In 95.4 2.1 4.6E-05 41.6 17.6 18 518-535 364-381 (539)
264 PRK11619 lytic murein transgly 95.4 4.2 9.2E-05 42.4 34.1 115 410-527 254-373 (644)
265 KOG1920 IkappaB kinase complex 95.4 5.1 0.00011 43.4 21.6 78 476-560 973-1052(1265)
266 KOG3941 Intermediate in Toll s 95.3 0.23 5.1E-06 43.9 10.2 101 383-484 51-174 (406)
267 KOG3941 Intermediate in Toll s 95.1 0.14 3E-06 45.3 8.2 111 88-198 52-186 (406)
268 smart00299 CLH Clathrin heavy 95.1 1.5 3.2E-05 35.5 14.7 126 400-545 10-136 (140)
269 PF12921 ATP13: Mitochondrial 95.0 0.57 1.2E-05 36.9 10.9 75 433-507 3-95 (126)
270 KOG1585 Protein required for f 94.9 2.4 5.1E-05 37.1 15.1 144 368-524 93-251 (308)
271 PRK09687 putative lyase; Provi 94.9 3.1 6.7E-05 38.3 27.2 80 261-342 34-117 (280)
272 PF04053 Coatomer_WDAD: Coatom 94.9 0.97 2.1E-05 44.5 14.5 133 332-495 297-429 (443)
273 PF02259 FAT: FAT domain; Int 94.6 4.7 0.0001 38.8 20.8 150 395-547 144-305 (352)
274 PF13181 TPR_8: Tetratricopept 94.5 0.098 2.1E-06 29.9 4.2 31 502-532 3-33 (34)
275 PRK09687 putative lyase; Provi 94.4 4.2 9.1E-05 37.5 25.9 75 261-340 203-277 (280)
276 PF13428 TPR_14: Tetratricopep 94.3 0.088 1.9E-06 32.4 3.9 32 534-565 1-32 (44)
277 PF13176 TPR_7: Tetratricopept 94.2 0.09 1.9E-06 30.7 3.7 26 536-561 1-26 (36)
278 PF09613 HrpB1_HrpK: Bacterial 94.2 0.46 1E-05 38.6 8.8 82 469-550 8-94 (160)
279 TIGR02561 HrpB1_HrpK type III 94.2 0.39 8.5E-06 38.3 8.1 70 480-549 22-93 (153)
280 smart00299 CLH Clathrin heavy 94.1 2.6 5.6E-05 34.1 14.3 86 104-197 10-95 (140)
281 KOG2066 Vacuolar assembly/sort 94.0 8.6 0.00019 39.7 25.0 97 147-245 367-467 (846)
282 PF13176 TPR_7: Tetratricopept 93.9 0.13 2.9E-06 29.9 3.9 28 502-529 1-28 (36)
283 KOG4648 Uncharacterized conser 93.6 0.18 3.9E-06 45.8 5.9 101 438-540 103-205 (536)
284 PF07035 Mic1: Colon cancer-as 93.5 2.9 6.4E-05 34.6 12.4 117 122-246 15-133 (167)
285 COG2909 MalT ATP-dependent tra 93.5 11 0.00023 39.8 18.6 256 302-574 367-658 (894)
286 KOG2114 Vacuolar assembly/sort 93.5 11 0.00024 39.3 26.3 170 78-259 342-516 (933)
287 PF07719 TPR_2: Tetratricopept 93.3 0.14 3E-06 29.2 3.3 31 534-564 1-31 (34)
288 PF00637 Clathrin: Region in C 93.3 0.029 6.4E-07 45.8 0.6 85 142-229 13-97 (143)
289 KOG4648 Uncharacterized conser 93.3 0.31 6.7E-06 44.4 6.9 97 403-503 103-201 (536)
290 COG2976 Uncharacterized protei 93.2 4.5 9.9E-05 34.1 14.8 129 399-532 56-191 (207)
291 PF09613 HrpB1_HrpK: Bacterial 93.2 1.1 2.4E-05 36.6 9.3 117 433-555 8-130 (160)
292 PF10602 RPN7: 26S proteasome 93.2 1.5 3.2E-05 37.2 10.6 96 399-494 38-139 (177)
293 KOG1464 COP9 signalosome, subu 93.2 5.8 0.00013 35.2 17.1 240 277-523 40-326 (440)
294 PF08631 SPO22: Meiosis protei 93.1 7.3 0.00016 36.0 23.4 20 508-527 254-273 (278)
295 PF06552 TOM20_plant: Plant sp 92.9 1.1 2.3E-05 37.3 8.8 43 516-565 96-138 (186)
296 PF00515 TPR_1: Tetratricopept 92.8 0.18 4E-06 28.7 3.3 30 535-564 2-31 (34)
297 PF13174 TPR_6: Tetratricopept 92.8 0.27 5.9E-06 27.6 4.0 26 507-532 7-32 (33)
298 COG2976 Uncharacterized protei 92.7 4.8 0.0001 34.0 12.4 90 474-564 95-189 (207)
299 KOG4234 TPR repeat-containing 92.7 1.8 4E-05 36.4 9.9 86 405-494 103-194 (271)
300 COG3629 DnrI DNA-binding trans 92.5 0.81 1.8E-05 41.4 8.5 60 469-528 154-215 (280)
301 PF02259 FAT: FAT domain; Int 92.5 8.3 0.00018 37.1 16.4 68 498-565 144-215 (352)
302 PRK15180 Vi polysaccharide bio 92.3 1.3 2.8E-05 42.5 9.7 130 404-537 296-428 (831)
303 PF10602 RPN7: 26S proteasome 92.0 3.5 7.5E-05 34.9 11.3 102 360-461 30-142 (177)
304 PRK10941 hypothetical protein; 91.8 1.2 2.6E-05 40.5 8.8 63 503-565 184-246 (269)
305 PF13170 DUF4003: Protein of u 91.7 11 0.00024 35.0 15.5 135 311-477 78-226 (297)
306 PF13174 TPR_6: Tetratricopept 91.7 0.2 4.4E-06 28.2 2.6 30 536-565 2-31 (33)
307 COG4649 Uncharacterized protei 91.6 6.9 0.00015 32.3 13.8 20 441-460 176-195 (221)
308 PF06552 TOM20_plant: Plant sp 91.5 0.72 1.6E-05 38.2 6.3 35 515-549 50-84 (186)
309 KOG1586 Protein required for f 91.5 9 0.00019 33.4 16.6 53 510-562 164-223 (288)
310 PF09205 DUF1955: Domain of un 91.2 6.1 0.00013 31.0 13.1 135 377-530 13-150 (161)
311 PF07721 TPR_4: Tetratricopept 91.1 0.31 6.7E-06 25.8 2.7 24 535-558 2-25 (26)
312 COG3947 Response regulator con 91.1 11 0.00025 34.0 13.8 59 504-562 283-341 (361)
313 COG3629 DnrI DNA-binding trans 91.1 3 6.4E-05 37.9 10.4 78 399-477 155-236 (280)
314 PF14561 TPR_20: Tetratricopep 91.0 0.94 2E-05 33.2 6.1 49 501-549 23-73 (90)
315 COG4455 ImpE Protein of avirul 90.7 0.97 2.1E-05 38.6 6.5 62 472-533 5-68 (273)
316 KOG4642 Chaperone-dependent E3 90.7 1.1 2.5E-05 38.8 7.0 52 509-560 53-104 (284)
317 PF14853 Fis1_TPR_C: Fis1 C-te 90.7 1.4 3E-05 28.4 5.8 36 505-540 6-41 (53)
318 PF13181 TPR_8: Tetratricopept 90.6 0.57 1.2E-05 26.6 3.8 29 535-563 2-30 (34)
319 PF13431 TPR_17: Tetratricopep 90.5 0.32 7E-06 27.8 2.6 22 467-488 12-33 (34)
320 COG4105 ComL DNA uptake lipopr 90.4 12 0.00027 33.2 23.5 74 302-376 41-116 (254)
321 KOG0276 Vesicle coat complex C 90.3 4.7 0.0001 40.2 11.5 151 212-391 596-746 (794)
322 PF13374 TPR_10: Tetratricopep 90.3 0.79 1.7E-05 27.5 4.5 27 502-528 4-30 (42)
323 PF10345 Cohesin_load: Cohesin 90.2 27 0.00058 36.7 33.7 49 513-561 547-604 (608)
324 COG1747 Uncharacterized N-term 90.2 20 0.00044 35.3 22.7 170 368-544 68-249 (711)
325 PF02284 COX5A: Cytochrome c o 90.1 3.4 7.3E-05 30.6 7.9 60 415-476 28-87 (108)
326 PF08631 SPO22: Meiosis protei 89.9 16 0.00035 33.7 23.6 158 399-561 86-273 (278)
327 COG4785 NlpI Lipoprotein NlpI, 89.9 12 0.00026 32.3 15.8 29 102-130 100-128 (297)
328 PF09986 DUF2225: Uncharacteri 89.8 2.3 4.9E-05 37.3 8.5 63 503-565 121-196 (214)
329 PF07035 Mic1: Colon cancer-as 89.8 11 0.00023 31.4 12.7 47 157-203 15-61 (167)
330 TIGR02561 HrpB1_HrpK type III 89.7 2.9 6.2E-05 33.6 8.0 82 433-517 8-95 (153)
331 KOG1550 Extracellular protein 89.7 27 0.00059 36.0 22.3 246 306-564 260-539 (552)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 2.9 6.3E-05 30.5 7.2 61 413-475 23-83 (103)
333 TIGR02508 type_III_yscG type I 89.6 5.7 0.00012 29.3 8.7 60 271-333 46-105 (115)
334 TIGR03504 FimV_Cterm FimV C-te 89.6 0.7 1.5E-05 28.3 3.6 27 538-564 3-29 (44)
335 COG1747 Uncharacterized N-term 89.4 23 0.00051 34.9 18.4 94 294-393 65-158 (711)
336 KOG0890 Protein kinase of the 89.1 57 0.0012 39.0 25.0 308 207-530 1388-1732(2382)
337 KOG2063 Vacuolar assembly/sort 89.1 36 0.00078 36.7 18.5 28 103-130 506-533 (877)
338 PF13374 TPR_10: Tetratricopep 89.0 0.68 1.5E-05 27.7 3.5 28 535-562 3-30 (42)
339 KOG1920 IkappaB kinase complex 89.0 40 0.00087 37.1 22.6 143 369-527 911-1053(1265)
340 KOG0276 Vesicle coat complex C 88.3 10 0.00022 37.9 12.2 131 368-525 616-746 (794)
341 KOG0545 Aryl-hydrocarbon recep 88.3 2 4.3E-05 37.5 6.7 58 507-564 237-294 (329)
342 PF00637 Clathrin: Region in C 88.1 0.69 1.5E-05 37.6 3.9 84 107-197 13-96 (143)
343 smart00028 TPR Tetratricopepti 87.5 1.4 3E-05 23.9 4.1 28 504-531 5-32 (34)
344 COG4649 Uncharacterized protei 87.3 16 0.00034 30.4 15.8 120 408-528 69-195 (221)
345 KOG2396 HAT (Half-A-TPR) repea 87.1 33 0.00071 33.8 32.7 241 313-562 300-558 (568)
346 PF11207 DUF2989: Protein of u 87.0 4.7 0.0001 34.4 8.1 75 479-554 118-198 (203)
347 KOG1550 Extracellular protein 86.8 25 0.00055 36.2 15.1 92 398-494 289-390 (552)
348 KOG4570 Uncharacterized conser 86.6 7.1 0.00015 35.6 9.3 90 368-461 66-164 (418)
349 KOG1308 Hsp70-interacting prot 86.4 0.47 1E-05 43.4 2.1 57 508-564 156-212 (377)
350 PRK11619 lytic murein transgly 85.9 49 0.0011 34.8 39.1 325 170-526 128-465 (644)
351 PF13929 mRNA_stabil: mRNA sta 85.9 27 0.00059 31.8 12.9 59 168-226 199-262 (292)
352 PRK13800 putative oxidoreducta 85.5 65 0.0014 35.7 26.3 19 467-485 788-806 (897)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 85.1 6.1 0.00013 29.0 6.7 63 116-179 22-84 (103)
354 smart00386 HAT HAT (Half-A-TPR 84.7 2.5 5.3E-05 23.4 4.1 30 514-543 1-30 (33)
355 KOG4279 Serine/threonine prote 84.7 16 0.00034 37.8 11.6 106 407-539 297-405 (1226)
356 KOG2066 Vacuolar assembly/sort 84.1 58 0.0013 34.1 27.7 171 107-295 362-536 (846)
357 KOG4507 Uncharacterized conser 84.1 3.3 7.2E-05 41.0 6.6 100 443-545 618-721 (886)
358 KOG1464 COP9 signalosome, subu 84.0 31 0.00068 30.9 16.6 182 307-489 39-252 (440)
359 PF02284 COX5A: Cytochrome c o 83.7 6 0.00013 29.3 6.3 60 119-179 28-87 (108)
360 smart00028 TPR Tetratricopepti 83.7 2 4.4E-05 23.2 3.5 30 535-564 2-31 (34)
361 PF04910 Tcf25: Transcriptiona 83.7 43 0.00094 32.2 14.5 53 508-560 111-165 (360)
362 KOG0551 Hsp90 co-chaperone CNS 83.5 6.7 0.00015 36.1 7.9 92 469-560 82-179 (390)
363 PF11207 DUF2989: Protein of u 82.9 13 0.00029 31.7 9.0 73 414-487 123-197 (203)
364 PF10345 Cohesin_load: Cohesin 82.2 70 0.0015 33.6 24.0 48 511-558 372-428 (608)
365 KOG4570 Uncharacterized conser 82.1 6.8 0.00015 35.7 7.3 102 62-166 57-165 (418)
366 COG4455 ImpE Protein of avirul 82.0 18 0.0004 31.3 9.3 127 399-535 3-140 (273)
367 TIGR02508 type_III_yscG type I 81.9 18 0.0004 26.7 8.3 79 150-231 19-97 (115)
368 PRK12798 chemotaxis protein; R 81.8 52 0.0011 31.8 22.1 183 379-564 125-325 (421)
369 PF07721 TPR_4: Tetratricopept 81.4 3 6.5E-05 22.0 3.2 19 473-491 6-24 (26)
370 KOG3364 Membrane protein invol 80.6 27 0.00057 27.7 9.1 73 465-537 29-108 (149)
371 TIGR02270 conserved hypothetic 80.5 62 0.0013 31.8 23.9 231 108-354 45-276 (410)
372 PF12862 Apc5: Anaphase-promot 80.1 6.6 0.00014 29.1 5.8 53 510-562 8-69 (94)
373 KOG0376 Serine-threonine phosp 79.8 1.3 2.9E-05 42.6 2.4 102 438-542 10-114 (476)
374 PRK15180 Vi polysaccharide bio 79.7 65 0.0014 31.6 23.9 109 54-166 310-421 (831)
375 PF09670 Cas_Cas02710: CRISPR- 79.2 49 0.0011 32.2 12.9 54 406-460 140-197 (379)
376 PF04097 Nic96: Nup93/Nic96; 78.9 90 0.0019 32.8 21.3 21 478-498 515-535 (613)
377 PF14863 Alkyl_sulf_dimr: Alky 78.8 13 0.00027 30.0 7.2 65 484-551 57-121 (141)
378 PRK13800 putative oxidoreducta 78.4 1.2E+02 0.0025 33.8 28.5 261 225-506 627-890 (897)
379 PRK10941 hypothetical protein; 78.2 18 0.00039 33.0 9.0 70 471-540 184-255 (269)
380 PF10579 Rapsyn_N: Rapsyn N-te 77.4 6 0.00013 27.7 4.3 45 512-556 18-65 (80)
381 PF10579 Rapsyn_N: Rapsyn N-te 75.8 9.7 0.00021 26.7 5.0 44 410-453 19-64 (80)
382 KOG0530 Protein farnesyltransf 75.7 61 0.0013 29.2 12.1 70 500-569 112-182 (318)
383 KOG2422 Uncharacterized conser 75.1 57 0.0012 32.9 11.7 117 410-527 251-405 (665)
384 PF07163 Pex26: Pex26 protein; 74.2 23 0.0005 32.0 8.1 88 107-194 89-181 (309)
385 KOG4077 Cytochrome c oxidase, 73.7 24 0.00052 27.5 7.0 59 415-475 67-125 (149)
386 KOG4642 Chaperone-dependent E3 73.7 47 0.001 29.4 9.6 117 376-494 20-143 (284)
387 COG0790 FOG: TPR repeat, SEL1 73.5 78 0.0017 29.4 20.3 48 515-565 206-268 (292)
388 TIGR03504 FimV_Cterm FimV C-te 72.7 9.3 0.0002 23.4 3.9 25 301-325 5-29 (44)
389 COG4976 Predicted methyltransf 72.4 8.2 0.00018 33.5 4.8 59 478-536 5-65 (287)
390 PF07163 Pex26: Pex26 protein; 71.2 45 0.00098 30.2 9.2 56 302-357 90-145 (309)
391 PF09477 Type_III_YscG: Bacter 71.1 42 0.00092 25.3 10.2 83 148-233 18-100 (116)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 69.4 51 0.0011 26.0 8.6 42 518-559 81-124 (126)
393 PF12862 Apc5: Anaphase-promot 69.3 35 0.00075 25.2 7.3 23 507-529 48-70 (94)
394 PF13762 MNE1: Mitochondrial s 68.1 45 0.00097 27.0 7.9 49 135-183 78-127 (145)
395 PF07575 Nucleopor_Nup85: Nup8 67.6 1.6E+02 0.0035 30.6 15.3 57 69-127 113-174 (566)
396 KOG2471 TPR repeat-containing 67.0 1.4E+02 0.003 29.7 13.2 105 373-480 247-381 (696)
397 COG2912 Uncharacterized conser 66.6 28 0.0006 31.5 7.1 57 508-564 189-245 (269)
398 TIGR02270 conserved hypothetic 66.4 1.4E+02 0.003 29.4 23.8 172 143-320 45-216 (410)
399 KOG3824 Huntingtin interacting 66.1 24 0.00053 32.2 6.6 61 479-539 127-189 (472)
400 KOG4507 Uncharacterized conser 65.1 32 0.0007 34.6 7.8 134 429-565 568-707 (886)
401 cd08819 CARD_MDA5_2 Caspase ac 65.0 25 0.00054 25.3 5.3 65 155-221 21-85 (88)
402 PF04190 DUF410: Protein of un 64.3 1.2E+02 0.0025 27.8 14.1 82 466-563 88-170 (260)
403 PF04190 DUF410: Protein of un 63.8 1.2E+02 0.0025 27.7 19.1 124 322-461 41-170 (260)
404 cd08326 CARD_CASP9 Caspase act 63.7 33 0.00071 24.7 5.8 63 53-120 18-80 (84)
405 KOG0376 Serine-threonine phosp 62.9 14 0.0003 36.1 4.9 95 408-507 15-112 (476)
406 PF11846 DUF3366: Domain of un 62.5 38 0.00083 29.1 7.4 37 495-531 139-175 (193)
407 PF13762 MNE1: Mitochondrial s 62.2 84 0.0018 25.5 8.6 89 60-149 28-128 (145)
408 PF14853 Fis1_TPR_C: Fis1 C-te 61.9 16 0.00034 23.5 3.6 30 536-565 3-32 (53)
409 PF04910 Tcf25: Transcriptiona 61.1 1.6E+02 0.0035 28.4 14.3 95 467-561 99-220 (360)
410 cd08819 CARD_MDA5_2 Caspase ac 60.9 57 0.0012 23.6 6.4 34 148-186 48-81 (88)
411 PF11846 DUF3366: Domain of un 60.0 37 0.00081 29.2 6.9 32 429-460 141-172 (193)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 59.8 85 0.0018 24.8 8.6 45 347-391 80-124 (126)
413 PF10366 Vps39_1: Vacuolar sor 58.4 50 0.0011 25.2 6.4 27 297-323 41-67 (108)
414 COG5191 Uncharacterized conser 58.2 25 0.00054 32.2 5.3 80 463-542 102-184 (435)
415 KOG2659 LisH motif-containing 58.1 1.1E+02 0.0023 27.0 8.9 21 404-424 71-91 (228)
416 KOG0292 Vesicle coat complex C 57.6 1.6E+02 0.0035 31.6 11.4 132 374-529 651-782 (1202)
417 KOG0687 26S proteasome regulat 56.0 1.8E+02 0.0038 27.3 13.8 110 350-461 88-210 (393)
418 PF04097 Nic96: Nup93/Nic96; 55.3 2.8E+02 0.006 29.3 20.6 86 372-460 264-355 (613)
419 COG4976 Predicted methyltransf 55.2 24 0.00052 30.8 4.5 57 441-499 4-61 (287)
420 KOG1586 Protein required for f 54.5 1.6E+02 0.0034 26.2 18.9 18 443-460 165-182 (288)
421 PF10255 Paf67: RNA polymerase 53.4 63 0.0014 31.4 7.6 52 238-289 127-189 (404)
422 PF10366 Vps39_1: Vacuolar sor 53.4 99 0.0022 23.6 8.9 26 503-528 42-67 (108)
423 KOG0686 COP9 signalosome, subu 53.3 2.2E+02 0.0048 27.6 13.9 59 266-324 152-216 (466)
424 KOG3807 Predicted membrane pro 52.8 2E+02 0.0043 26.9 14.1 55 403-459 281-338 (556)
425 COG4941 Predicted RNA polymera 52.7 2.1E+02 0.0045 27.0 11.9 123 412-538 271-403 (415)
426 KOG4077 Cytochrome c oxidase, 52.6 1E+02 0.0022 24.2 6.9 46 495-540 79-124 (149)
427 PF11768 DUF3312: Protein of u 52.6 2.1E+02 0.0044 29.1 10.9 23 402-424 413-435 (545)
428 PF11817 Foie-gras_1: Foie gra 52.1 57 0.0012 29.5 6.9 21 439-459 185-205 (247)
429 PRK13342 recombination factor 51.9 2.5E+02 0.0054 27.8 17.4 47 400-446 230-279 (413)
430 PHA02537 M terminase endonucle 51.8 1.7E+02 0.0038 25.9 9.5 21 512-532 190-210 (230)
431 KOG4521 Nuclear pore complex, 51.6 4E+02 0.0086 30.0 14.4 121 435-557 986-1125(1480)
432 PF14689 SPOB_a: Sensor_kinase 50.5 38 0.00082 22.6 4.1 27 434-460 25-51 (62)
433 PF11663 Toxin_YhaV: Toxin wit 50.3 23 0.0005 27.9 3.4 32 113-146 107-138 (140)
434 cd08326 CARD_CASP9 Caspase act 49.9 74 0.0016 22.9 5.8 59 157-219 20-78 (84)
435 KOG2581 26S proteasome regulat 49.8 2.5E+02 0.0055 27.2 15.7 25 434-458 211-235 (493)
436 COG0735 Fur Fe2+/Zn2+ uptake r 49.7 90 0.0019 25.4 7.0 55 317-372 8-62 (145)
437 PF07720 TPR_3: Tetratricopept 49.7 51 0.0011 19.1 4.8 14 509-522 10-23 (36)
438 KOG1308 Hsp70-interacting prot 49.7 19 0.00041 33.5 3.3 82 446-529 128-211 (377)
439 KOG2034 Vacuolar sorting prote 49.5 3.7E+02 0.0081 29.1 25.8 275 241-564 366-658 (911)
440 PF08424 NRDE-2: NRDE-2, neces 49.3 2.4E+02 0.0052 26.7 15.0 115 413-530 47-184 (321)
441 PRK13184 pknD serine/threonine 48.4 1.9E+02 0.0042 32.0 11.0 94 441-536 484-588 (932)
442 PF12069 DUF3549: Protein of u 48.3 2.5E+02 0.0054 26.7 14.9 115 248-365 147-265 (340)
443 COG5159 RPN6 26S proteasome re 48.2 2.2E+02 0.0048 26.1 14.2 155 405-559 11-190 (421)
444 PF12968 DUF3856: Domain of Un 48.0 1.3E+02 0.0028 23.4 7.2 64 499-562 54-128 (144)
445 PF14561 TPR_20: Tetratricopep 47.9 1.1E+02 0.0023 22.4 8.0 43 522-564 10-52 (90)
446 KOG3824 Huntingtin interacting 47.9 30 0.00066 31.6 4.2 56 442-499 126-182 (472)
447 smart00777 Mad3_BUB1_I Mad3/BU 47.9 1.4E+02 0.003 23.6 8.0 40 519-558 82-123 (125)
448 PF06957 COPI_C: Coatomer (COP 47.7 78 0.0017 31.0 7.2 45 489-533 287-333 (422)
449 PF08424 NRDE-2: NRDE-2, neces 47.4 2.5E+02 0.0055 26.6 17.1 119 448-568 47-188 (321)
450 PRK10564 maltose regulon perip 47.4 37 0.00079 31.2 4.7 39 297-335 259-297 (303)
451 KOG4567 GTPase-activating prot 47.1 1.7E+02 0.0036 27.2 8.6 85 156-241 263-357 (370)
452 cd08332 CARD_CASP2 Caspase act 47.0 86 0.0019 22.9 5.9 60 53-117 22-81 (90)
453 PF02184 HAT: HAT (Half-A-TPR) 45.9 55 0.0012 18.5 3.8 27 515-542 2-28 (32)
454 PHA02875 ankyrin repeat protei 45.6 3.1E+02 0.0067 27.0 13.6 69 55-124 16-88 (413)
455 KOG0686 COP9 signalosome, subu 45.1 3E+02 0.0065 26.8 14.9 92 366-459 150-256 (466)
456 PF10516 SHNi-TPR: SHNi-TPR; 44.7 51 0.0011 19.4 3.5 28 535-562 2-29 (38)
457 COG0790 FOG: TPR repeat, SEL1 44.4 2.6E+02 0.0057 25.8 20.2 110 381-494 92-217 (292)
458 PF11848 DUF3368: Domain of un 44.0 79 0.0017 19.8 5.3 31 409-439 14-44 (48)
459 KOG0889 Histone acetyltransfer 43.9 8.5E+02 0.018 31.6 22.4 21 209-229 2489-2509(3550)
460 KOG2396 HAT (Half-A-TPR) repea 43.7 3.5E+02 0.0077 27.2 30.6 102 429-533 456-564 (568)
461 PF10255 Paf67: RNA polymerase 43.7 1.3E+02 0.0027 29.5 8.0 160 399-568 77-275 (404)
462 PF09477 Type_III_YscG: Bacter 43.3 1.5E+02 0.0032 22.6 8.9 52 374-427 48-99 (116)
463 PRK10564 maltose regulon perip 42.8 54 0.0012 30.2 5.1 40 399-438 259-298 (303)
464 COG2256 MGS1 ATPase related to 42.3 3.4E+02 0.0073 26.5 12.5 53 293-345 244-299 (436)
465 KOG4567 GTPase-activating prot 42.1 2.8E+02 0.006 25.9 9.2 85 121-210 263-357 (370)
466 PF04781 DUF627: Protein of un 41.3 1.6E+02 0.0035 22.5 7.2 97 440-559 4-103 (111)
467 PF00244 14-3-3: 14-3-3 protei 41.3 2.6E+02 0.0057 25.0 12.8 57 403-459 7-64 (236)
468 KOG0292 Vesicle coat complex C 41.2 2E+02 0.0044 31.0 9.2 161 371-566 625-785 (1202)
469 PF12926 MOZART2: Mitotic-spin 40.7 1.4E+02 0.003 21.6 6.4 56 41-97 15-70 (88)
470 KOG3364 Membrane protein invol 40.6 1.9E+02 0.0041 23.2 9.2 71 429-500 29-104 (149)
471 COG5191 Uncharacterized conser 40.0 59 0.0013 30.0 4.8 68 497-564 104-172 (435)
472 cd08323 CARD_APAF1 Caspase act 39.9 1.3E+02 0.0029 21.8 5.8 63 53-120 16-78 (86)
473 PF11817 Foie-gras_1: Foie gra 39.6 2E+02 0.0043 26.0 8.4 51 508-558 186-242 (247)
474 PF11663 Toxin_YhaV: Toxin wit 39.6 36 0.00079 26.9 3.0 32 408-441 106-137 (140)
475 PRK14956 DNA polymerase III su 39.5 2.8E+02 0.006 28.0 9.8 90 60-172 193-284 (484)
476 PRK13184 pknD serine/threonine 39.1 5.9E+02 0.013 28.4 20.4 148 411-563 670-833 (932)
477 cd00280 TRFH Telomeric Repeat 38.2 2.5E+02 0.0055 23.9 11.5 35 508-543 119-153 (200)
478 PF09454 Vps23_core: Vps23 cor 38.1 97 0.0021 21.0 4.6 49 395-444 6-54 (65)
479 PF04034 DUF367: Domain of unk 37.7 2E+02 0.0044 22.6 7.6 60 468-527 66-126 (127)
480 cd08323 CARD_APAF1 Caspase act 37.7 1.2E+02 0.0025 22.1 5.2 63 155-221 16-78 (86)
481 KOG4814 Uncharacterized conser 37.7 4.5E+02 0.0098 27.4 10.7 58 505-562 399-456 (872)
482 PF13170 DUF4003: Protein of u 37.5 3.5E+02 0.0076 25.3 20.0 51 414-464 79-135 (297)
483 PF12796 Ank_2: Ankyrin repeat 37.1 1.2E+02 0.0027 21.5 5.7 15 81-95 5-19 (89)
484 COG0735 Fur Fe2+/Zn2+ uptake r 36.9 2.3E+02 0.0049 23.1 7.5 65 282-346 7-71 (145)
485 smart00777 Mad3_BUB1_I Mad3/BU 36.7 2.1E+02 0.0046 22.6 8.8 45 347-391 80-124 (125)
486 PF09986 DUF2225: Uncharacteri 35.9 3E+02 0.0066 24.2 8.7 24 438-461 171-194 (214)
487 COG4003 Uncharacterized protei 35.9 94 0.002 21.9 4.2 37 39-76 36-72 (98)
488 KOG2062 26S proteasome regulat 35.8 5.7E+02 0.012 27.3 29.3 499 55-563 44-635 (929)
489 PF14689 SPOB_a: Sensor_kinase 35.7 65 0.0014 21.5 3.5 25 401-425 27-51 (62)
490 KOG2300 Uncharacterized conser 35.3 4.8E+02 0.01 26.2 29.5 150 408-558 334-509 (629)
491 cd08332 CARD_CASP2 Caspase act 35.2 1E+02 0.0022 22.5 4.7 59 155-217 22-80 (90)
492 KOG2471 TPR repeat-containing 34.8 4.8E+02 0.01 26.2 10.0 61 507-570 213-273 (696)
493 PF10155 DUF2363: Uncharacteri 34.6 2.3E+02 0.005 22.4 10.2 109 86-197 5-124 (126)
494 PF03745 DUF309: Domain of unk 34.5 1.2E+02 0.0026 20.3 4.5 48 111-158 9-61 (62)
495 PF09868 DUF2095: Uncharacteri 34.0 1.1E+02 0.0023 23.4 4.5 37 39-76 66-102 (128)
496 KOG1811 Predicted Zn2+-binding 34.0 3.6E+02 0.0077 27.7 9.3 88 472-561 560-651 (1141)
497 PRK09857 putative transposase; 33.5 2.7E+02 0.0059 25.9 8.3 62 506-567 212-273 (292)
498 PF12583 TPPII_N: Tripeptidyl 32.8 2.2E+02 0.0048 22.5 6.2 37 511-547 87-123 (139)
499 KOG3807 Predicted membrane pro 32.7 4.3E+02 0.0092 24.9 11.7 19 442-460 285-303 (556)
500 PRK11639 zinc uptake transcrip 32.1 2.2E+02 0.0049 23.8 6.9 22 345-366 40-61 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-81 Score=668.37 Aligned_cols=549 Identities=34% Similarity=0.605 Sum_probs=522.3
Q ss_pred hhhhhhccC-CCCCCCCcchHHHHHHHHHccC---CchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhh
Q 046956 19 MLPNCSRSA-PINFPKPSCLLSALTLIKKCKL---QTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94 (574)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~ 94 (574)
++..|..+. ....|+..+ +..++..|+. .....++|..+++.|+.||+.++|.++ .+|+++|+++.|.++|+
T Consensus 171 A~~~f~~M~~~g~~Pd~~t---~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li-~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYT---FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI-TMYVKCGDVVSARLVFD 246 (857)
T ss_pred HHHHHHHHHHcCCCCChhH---HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH-HHHhcCCCHHHHHHHHh
Confidence 344444443 233455555 5666666754 445589999999999999999999999 99999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchH
Q 046956 95 RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174 (574)
Q Consensus 95 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 174 (574)
+|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHccCChH
Q 046956 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLR 250 (574)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 250 (574)
+.|+.+|++.|++++|.++|++|.++|..+|+++|.+|++.|++++|+++|++|. .||..||+.++.+|++.|+++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 9999999999999999999999999999999999999999999999999999995 479999999999999999999
Q ss_pred HHHHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046956 251 SARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326 (574)
Q Consensus 251 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 326 (574)
.|.++++.+. .++..+|++|+++|+++|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 9999999442 588999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 406 (574)
.||..||..++.+|++.|+++.+.+++..+.+.|..++.. +++.++++|+++|++++|.++|+.+ .+|..+||.+|.+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~-~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~ 563 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTG 563 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce-echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHH
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999 9999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
|+++|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999667999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|+++|++
T Consensus 644 A~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 644 AYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccC
Q 046956 567 KIPGCSSL 574 (574)
Q Consensus 567 ~~~~~s~~ 574 (574)
|+||+|||
T Consensus 724 k~~g~s~i 731 (857)
T PLN03077 724 VDPGCSWV 731 (857)
T ss_pred CCCCccEE
Confidence 99999997
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7e-73 Score=602.85 Aligned_cols=523 Identities=27% Similarity=0.460 Sum_probs=483.8
Q ss_pred HHHHHHHc---cCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCC
Q 046956 40 ALTLIKKC---KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSR 116 (574)
Q Consensus 40 ~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 116 (574)
+..++..| +....+.++|..+++.|..++..++|.++ ..|+++|+++.|.++|++|+.||.++||++|.+|++.|+
T Consensus 89 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li-~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~ 167 (857)
T PLN03077 89 YVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML-SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167 (857)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC
Confidence 44455555 45566789999999999999999999999 999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHcc
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (574)
+++|+++|++|...|+.||..||+.++++|+..++++.+.+++..+.+.|+.||..+++.|+.+|+++|+++.|.++|++
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHccCChHHHHHHHhcCC----CCchhHHH
Q 046956 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYT 268 (574)
Q Consensus 197 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 268 (574)
|.++|..+||++|.+|++.|++++|+++|++|. .||..||+.++.+|++.|+++.+.+++..+. .||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 999999999999999999999999999999996 4799999999999999999999999998442 58999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcch
Q 046956 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 348 (574)
+++.+|+++|++++|.++|++|..+|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 428 (574)
+.++++.+.+.|..++.. +++.|+++|+++|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 408 a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 408 GVKLHELAERKGLISYVV-VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHhCCCcchH-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999999988 9999999999999999999999999999999999999999999999999999999986 58
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 508 (574)
.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|.++|++++|.++|+++ .||..+|+.++.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 999999999999999999999999999999886 88888888888888888888888888888887 678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccC
Q 046956 509 ACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNIYATADRWLDVCLVRSKMK-ERGLRKI 568 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~ 568 (574)
+|.++|+.++|+++|++|.+.+ .+|..+|..+..+|.+.|++++|.++|++|. +.|+.|+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 8888888888888888887753 3346667777777888888888888888887 5666654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-72 Score=582.82 Aligned_cols=476 Identities=31% Similarity=0.569 Sum_probs=462.4
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC-CCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHH
Q 046956 98 NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176 (574)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 176 (574)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5577899999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHccCChHHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSA 252 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 252 (574)
|+.+|++.|+++.|.++|++|.+||..+||+++.+|++.|++++|+++|++|.+ ++..+|+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999964 6889999999999999999999
Q ss_pred HHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046956 253 RQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328 (574)
Q Consensus 253 ~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 328 (574)
.+++..+. .+|..+|++|+++|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99987321 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 046956 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408 (574)
Q Consensus 329 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 408 (574)
|..||+.++.+|++.|+++.|.+++..+.+.|..++.. +++.|+++|+++|++++|.++|++|.++|..+||.||.+|+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
++|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 046956 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568 (574)
Q Consensus 489 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (574)
+++++++..|+..+|+.++.+|..+|+++.|..++++++++.|++...|..|+.+|.+.|+|++|.+++++|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccC
Q 046956 569 PGCSSL 574 (574)
Q Consensus 569 ~~~s~~ 574 (574)
||+|||
T Consensus 563 ~g~s~i 568 (697)
T PLN03081 563 PACTWI 568 (697)
T ss_pred CCeeEE
Confidence 999996
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-64 Score=522.71 Aligned_cols=495 Identities=18% Similarity=0.275 Sum_probs=409.2
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccCCC-----ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP-----NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 140 (574)
.++...+..++ ..+.+.|++++|.++|++|..+ +...++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y-~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAY-NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHH-HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 44556666666 6666777777777777777543 334455566667777777777777777753 6777777
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC----CCChhhHHHHHHHHHhcC
Q 046956 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP----ERNVVSWTAMIVGYASVG 216 (574)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 216 (574)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 7777777777777777777777777777777777777777777777777777777776 367777777777777777
Q ss_pred ChHHHHHHHhhcCC----CCcchHHHHHHHHHccCChHHHHHHHhcCC------CCchhHHHHHHHHHHhcCChHHHHHH
Q 046956 217 DLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSARQLFDEMP------ERNVVSYTTMIDGYAKVGDMTSARSL 286 (574)
Q Consensus 217 ~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (574)
++++|+++|+.|.+ ||..+|+.++.+|++.|++++|.+++++|. .||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777743 577777777777777777777777777552 58899999999999999999999999
Q ss_pred HhhCCC----CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 287 FEAAPD----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 287 ~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 998875 5678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
++.. +|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 682 pd~~-tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTV-SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9988 99999999999999999999999985 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh----hc-------------------CCHHHHHHHHHhC-
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG----RT-------------------GHLKSAYELLNSM- 494 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~- 494 (574)
+.+|.+.|++++|.+++++|.+. |+.||..+|+.++..+. ++ +..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999987 99999999999986643 22 2346799999999
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHhcCCc-hHHHHHHHHHHhCCCccCCC
Q 046956 495 --PVEPHASAWGALLGACKLYSDIELGELVANRLFEL-EPQNAGSYVLLSNIYATADRW-LDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 495 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 570 (574)
++.||..+|..++.++...+..+.+..+++.+... .+.+...|..|++.+ |++ ++|..++++|.+.|+.|+-.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 78899999999997777888888888888765533 466678899999876 433 68999999999999977653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-61 Score=499.01 Aligned_cols=431 Identities=23% Similarity=0.416 Sum_probs=405.8
Q ss_pred CCCCcchHHHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHH
Q 046956 31 FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110 (574)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 110 (574)
.|+..++..++..+..++....+.++|..+.+.|+.||+.++|.++ .+|+++|+++.|.++|++|+.||.++||+++.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li-~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL-LMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH-HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 3444555455555555556667799999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHH
Q 046956 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190 (574)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 190 (574)
|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+|++|+++|+++|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHccCChHHHHHHHhcCC----CC
Q 046956 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ER 262 (574)
Q Consensus 191 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~ 262 (574)
.++|++|.++|+++||++|.+|++.|+.++|+++|++|. .||..||+.++.+|++.|++++|.+++..|. .+
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999995 4799999999999999999999999998543 68
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
|..++++|+++|+++|++++|.++|++|.++|+.+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHH-hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSR-SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
.|.+++|.++|+.|.+ .+..|+.. +|+.++++|++.|++++|.++++++. +|+..+|+.++.+|..+|+.+.|..++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~-~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAM-HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCcc-chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999986 58888877 99999999999999999999999997 799999999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 421 DRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 421 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
+++.+ +.|+ ..+|..+++.|.+.|++++|.++++.|.+. |+..
T Consensus 518 ~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 518 EKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99976 5565 569999999999999999999999999987 7754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-59 Score=487.58 Aligned_cols=476 Identities=17% Similarity=0.234 Sum_probs=434.3
Q ss_pred hHHHHHHhhccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHHhccCCcHHHHHHHHHH
Q 046956 86 LSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAV 162 (574)
Q Consensus 86 ~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 162 (574)
...+....+... .++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+++.|
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 353 EENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 344444455543 56788899999999999999999999999999985 467778889999999999999999999988
Q ss_pred HHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcc
Q 046956 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE----RNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNV 234 (574)
Q Consensus 163 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~ 234 (574)
.. ||..+|+.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..
T Consensus 433 ~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 63 9999999999999999999999999999974 899999999999999999999999999998 47999
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCC------CCCHhHHHHHHHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP------DRDVVAWSALISG 304 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~ 304 (574)
+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999663 5999999999999999999999999999984 4799999999999
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH
Q 046956 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384 (574)
Q Consensus 305 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (574)
|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|..|+.. +|+.++.+|++.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~-TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV-FFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 385 AAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 385 A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999997 4899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----c-------------------C
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKL----Y-------------------S 514 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------~ 514 (574)
. |+.||..+|+.++.+|.+.|++++|.+++++| +..||..+++.++..|.+ . +
T Consensus 748 ~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 748 L-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred c-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 7 99999999999999999999999999999998 688999999999866542 1 1
Q ss_pred CHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 515 DIELGELVANRLFELE-PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
..+.|..+|++|.+.. .++..+|..+..++...+..+.+..+++.|...+..+
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 2467889999999874 4456777777788888888999888888887666443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-33 Score=308.57 Aligned_cols=534 Identities=10% Similarity=0.015 Sum_probs=265.8
Q ss_pred cchhhhhhccCCCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhcc
Q 046956 17 SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96 (574)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~ 96 (574)
..+...|.......+.++.....+..++...++...+......+.+.. +.+..++..+. ..+.+.|+.++|.+.|+++
T Consensus 312 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 312 EQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLG-EAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Confidence 334444544443333333333444555555555555555555555443 33444454444 6666666666666666655
Q ss_pred C---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcch
Q 046956 97 V---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173 (574)
Q Consensus 97 ~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 173 (574)
. +.+...|..+...+...|++++|.+.|+++.+.... +......++..+.+.|++++|..+++.+.... +.+..+
T Consensus 390 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 467 (899)
T TIGR02917 390 TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASL 467 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHH
Confidence 3 223445555555556666666666666555544321 12223334444445555555555555554432 333444
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHH----------
Q 046956 174 GTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWN---------- 237 (574)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~---------- 237 (574)
+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++... +..++.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 45555555555555555555544432 22333444444444455555555554444321 223344
Q ss_pred ------------------------HHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046956 238 ------------------------ALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290 (574)
Q Consensus 238 ------------------------~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (574)
.++..+...|++++|...++.+. +.+...|..++..|.+.|++++|...|+.+
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555555544221 233444555555555555555555555443
Q ss_pred CC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh
Q 046956 291 PD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 291 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (574)
.+ .+...+..++.++...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.++....
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 704 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL-- 704 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH--
Confidence 32 233444455555555555555555555554431 223444444555555555555555555555444322211
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
.+..++..+.+.|++++|.+.|+.+. .|+..++..++.++...|++++|...++++.+.. +.+...+..+...|...
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 34445555555555555555555544 2333444455555555555555555555555432 23334555555555555
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
|++++|.+.|+++.+ ..+.+...+..++..+...|+ .+|+++++++ ...| +...+..+...+...|++++|...+
T Consensus 784 g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555554 233445555555555555555 5555555554 2222 2334444455555566666666666
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+++++.+|.++.++..++.++...|++++|.+++++|+
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666665554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-33 Score=306.22 Aligned_cols=540 Identities=13% Similarity=0.044 Sum_probs=387.2
Q ss_pred CccchhhhhhccCCCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhh
Q 046956 15 SCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94 (574)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~ 94 (574)
.+..++..|......++.....+.....++...++...+...+..+++.. +.++.....+. .++.+.|+.++|...++
T Consensus 276 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la-~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 276 NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLA-SIQLRLGRVDEAIATLS 353 (899)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH-HHHHHCCCHHHHHHHHH
Confidence 35567777777665554433343445556666788888888888888765 34556666666 88999999999999998
Q ss_pred ccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCc
Q 046956 95 RIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171 (574)
Q Consensus 95 ~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 171 (574)
.+. +.+...++.+...+.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.++.+.+.+. ...
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 431 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELG 431 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cch
Confidence 875 34667899999999999999999999999987642 2556677788888899999999999999988753 334
Q ss_pred chHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHc
Q 046956 172 FVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVK 245 (574)
Q Consensus 172 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 245 (574)
.....++..+.+.|++++|..+++++.. .+..+|..+...+...|++++|.+.|+++.+. +...+..+...+..
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 5667788899999999999999998875 46678999999999999999999999998653 45567778889999
Q ss_pred cCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHH
Q 046956 246 IGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFS 319 (574)
Q Consensus 246 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 319 (574)
.|++++|...++.+. +.+..++..+...+.+.|+.++|...++++.. .+...+..++..+...|++++|..+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998542 34566777777777777777777777766532 234455556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----
Q 046956 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----- 394 (574)
Q Consensus 320 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 394 (574)
++.+. .+.+...|..+..++...|++++|...++.+.+...... ..+..++..+.+.|++++|...|+++.+
T Consensus 592 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 592 EAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 66543 233455555556666666666666666665554432221 1445555555555555555555554431
Q ss_pred --------------------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 395 --------------------------------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 395 --------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
.+...+..+...+...|++++|...|+++... .|+..++..++.++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 23344555555666666666666666666653 34445555666666
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
.+.|++++|.+.++++.+ ..+.+...+..++..|...|++++|.+.|+++ ...| +...+..+...+...|+ .+|+
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 677777777777777665 44556677777778888888888888888777 3333 56667777778888888 7788
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
..++++++..|+++..+..++.++...|++++|.++++++.+.+..
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888888888888999999998888887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.1e-24 Score=234.21 Aligned_cols=509 Identities=12% Similarity=0.057 Sum_probs=368.5
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCc
Q 046956 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRF 117 (574)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~ 117 (574)
..++..-++.+.+...+..+.+.. +++..........+....|+.++|++.|+++. +.+...+..+...+...|++
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 345556667777777777776654 33332222222123334578888888888875 23455677777888888888
Q ss_pred hHHHHHHHHhHhCCCC--------------------------------CCcch-------------------H--HHHHH
Q 046956 118 IEVFTIFVRLIREEAV--------------------------------PDKYT-------------------F--PLVIK 144 (574)
Q Consensus 118 ~~a~~~~~~m~~~~~~--------------------------------~~~~~-------------------~--~~ll~ 144 (574)
++|+..++++.+.... |+... + .....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 8888888876543210 11000 0 01123
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CCh---hhHH------------H
Q 046956 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNV---VSWT------------A 207 (574)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~ 207 (574)
.+...|++++|+..|++.++.. +.+...+..|..++.+.|++++|...|++..+ |+. ..|. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3456788888888888888764 34667788888888888888888888887764 321 1121 1
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChH
Q 046956 208 MIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMT 281 (574)
Q Consensus 208 li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 281 (574)
....+.+.|++++|+..|+++.+. +...+..+...+...|++++|++.|+... +.+...+..+...|. .++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 234566788888888888887653 44466677888888888888888888432 344556666777664 45778
Q ss_pred HHHHHHhhCCCCC------------HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchH
Q 046956 282 SARSLFEAAPDRD------------VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349 (574)
Q Consensus 282 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 349 (574)
+|+..++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|+.++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765321 1234556777888999999999999998763 23566777888899999999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC----Chh---------HHHHHHHHHHHcCChHHH
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR----DVV---------SYCSMIKGLSIHGHGRQA 416 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~~~~~~a 416 (574)
...++.+.+..+.... .+..+...+...|+.++|...++.+... +.. .+..+...+...|+.++|
T Consensus 515 ~~~l~~al~~~P~~~~--~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQKPNDPE--QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999876544333 4555666778899999999999988632 111 123456678889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
..+++. .+.+...+..+...+.+.|++++|+..|+++.+ ..+.+...+..++..|...|++++|++.++.+ .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999872 245556778888899999999999999999997 44556888999999999999999999999988 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 496 VEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNA------GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 496 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..|+ ...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|...+++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4554 45566677888999999999999999999876654 3667789999999999999999998863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.1e-23 Score=230.98 Aligned_cols=516 Identities=12% Similarity=0.050 Sum_probs=277.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC--CCCh-hhH-------------
Q 046956 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--NPNT-FLW------------- 104 (574)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~------------- 104 (574)
.++-.+-++.+.+++....+.... +.++.++.... .++.+.|+.++|.+.+++.. .|+. ..+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~-~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARF-RLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 333333445555566666555544 34677777777 88899999999999999885 3332 222
Q ss_pred ---HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc-hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046956 105 ---NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY-TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180 (574)
Q Consensus 105 ---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 180 (574)
......+...|++++|++.|+++.+.+. |+.. ............|+.++|++.++++.+.. +.+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2234467889999999999999987632 2322 11111222335689999999999999875 4466778889999
Q ss_pred HHcCCChHHHHHHHccCCCCCh------hhH-----------------HH------------------------------
Q 046956 181 YGKRKEISCARKVFDEMPERNV------VSW-----------------TA------------------------------ 207 (574)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~------~~~-----------------~~------------------------------ 207 (574)
+...|+.++|...++++.+... ..| ..
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999988753110 001 00
Q ss_pred ----HHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHccCChHHHHHHHhcCCC--Cch---hHH--------
Q 046956 208 ----MIVGYASVGDLVEAKTVFDLMPE--R-SNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNV---VSY-------- 267 (574)
Q Consensus 208 ----li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~-------- 267 (574)
....+...|++++|+..|++..+ | +...+..+..++.+.|++++|...|++..+ |+. ..|
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 01223334455555555544433 1 333444444455555555555554442211 110 001
Q ss_pred ----HHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 268 ----TTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340 (574)
Q Consensus 268 ----~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 340 (574)
......+.+.|++++|++.|+++.+ .+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1112234444555555555544432 233344444455555555555555555544431 11222333333333
Q ss_pred hccCCcchHHHHHHHHHHhCCCCC-------hhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHc
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLS-------RAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIH 410 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 410 (574)
. .++.++|..+++.+........ ....+..++..+...|++++|++.|++..+ | +...+..+...|...
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 2 2334444444433321110000 001233345555666777777777776652 3 344566666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---------------------------
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY--------------------------- 462 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------------- 462 (574)
|++++|...++++.+. .|+ ...+..+...+...|+.++|...++.+....
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 7777777777776653 333 3344444444556677777777776543210
Q ss_pred -----------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 463 -----------AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 463 -----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
..+.+...+..+...+.+.|++++|++.|+++ ...| +...+..+...+...|++++|+..++++++.
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 01122233344455555555555555555554 2233 2444555555555556666666666655555
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.|+++..+..++.++...|++++|.++++++.+..
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 55555555556666666666666666666555443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-25 Score=206.91 Aligned_cols=439 Identities=15% Similarity=0.146 Sum_probs=359.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
-..+..-..+.|++++|.+.-...-+.+. .+......+-..+.+..+++....--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 44556666788999999887665544432 233333334445556666666655555544443 3346788889999999
Q ss_pred CCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchH---HHHHHHHHccCChHHHHHHHh
Q 046956 184 RKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW---NALIGGLVKIGDLRSARQLFD 257 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~ 257 (574)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|....+-++..| +.+...+-..|++++|...+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998876 3567899999999999999999999998877555332 334455556788888888887
Q ss_pred cCC--CCc-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-H
Q 046956 258 EMP--ERN-VVSYTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-E 330 (574)
Q Consensus 258 ~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~ 330 (574)
+.. +|. ...|+.|...+-..|++..|+..|++..+-| ..+|-.|...|...+.+++|+..|.+.... .|+ .
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 332 233 4689999999999999999999999987643 568999999999999999999999998764 454 5
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHH
Q 046956 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGL 407 (574)
Q Consensus 331 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 407 (574)
..+..+...|...|.++.|+..+++.++..+.... .|+.|..++-..|+..+|...|++... | ...+.+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~--Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD--AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchH--HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 67777888889999999999999999987766655 699999999999999999999999873 3 457889999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 485 (574)
...|.+++|..+|.+..+ +.|... .++.|...|-+.|++++|+..|++++ .+.|+ ...|+.+...|...|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998 788764 89999999999999999999999998 45777 588999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 486 SAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 486 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.|++.+.++ .++|. ....+.+...|...|+..+|++.|+.+++++|+.+.++..++.++.--.+|.+-
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 999999988 77776 567888889999999999999999999999999999999999988877777663
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.4e-21 Score=202.83 Aligned_cols=500 Identities=10% Similarity=0.016 Sum_probs=313.5
Q ss_pred cCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCC--CChhhHHHHHHHHHhCCCchHHHHHHH
Q 046956 48 KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN--PNTFLWNTLLKGYSQNSRFIEVFTIFV 125 (574)
Q Consensus 48 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~ 125 (574)
++...+...+.+.++.... ++.++..+. .+|.+.|+.++|+..+++... |+-..|..++..+ +++++|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA-~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLA-EAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 4555666667777666633 356666666 888888888888888877752 3223333333222 77777777777
Q ss_pred HhHhCCCCCCcchHHHH----------------------------------------HHHHhccCCcHHHHHHHHHHHHh
Q 046956 126 RLIREEAVPDKYTFPLV----------------------------------------IKACSHVLSVREGTAIHAAVIRW 165 (574)
Q Consensus 126 ~m~~~~~~~~~~~~~~l----------------------------------------l~~~~~~~~~~~a~~~~~~~~~~ 165 (574)
++...... +...+..+ ...+...|++++|+.++..+.+.
T Consensus 133 ~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 133 ELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 77665321 22222222 33444455555555555555555
Q ss_pred CCCCCcchHHHHHHHHHc-CCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcc-----
Q 046956 166 GVDEDVFVGTSLIDLYGK-RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-----RSNV----- 234 (574)
Q Consensus 166 g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~----- 234 (574)
+ +.+......|..+|.. .++ +++..+++...+.|...+..++..|.+.|+.++|.++++++.. ++..
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 4 2223334444444444 244 5555554443334555556666666666666666666665532 0000
Q ss_pred -------------------------hHHHHHHHHHccCChHHHHHHHhcCCC----------------------------
Q 046956 235 -------------------------SWNALIGGLVKIGDLRSARQLFDEMPE---------------------------- 261 (574)
Q Consensus 235 -------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------- 261 (574)
....++..+.+.++++.++++.. ...
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 01112344444555554444433 100
Q ss_pred -----CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-----CHhHHHHHHHHHHhCCC---chHHHHH----------
Q 046956 262 -----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-R-----DVVAWSALISGYAQNGQ---PDEAVKI---------- 317 (574)
Q Consensus 262 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~A~~~---------- 317 (574)
.+....-.+.....+.|+.++|.++|+...+ + +.....-++..|.+.+. ..++..+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 0112222222334456667777777665544 1 12233355566655544 2233222
Q ss_pred ------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 318 ------------FSDMCSK-NV-QP--DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 318 ------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
++..... +. ++ +...+..+..++.. ++.++|...+.......+ +.. ....++..+...|+
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~-~~L~lA~al~~~Gr 524 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAW-QHRAVAYQAYQVED 524 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chH-HHHHHHHHHHHCCC
Confidence 1111111 11 22 45566666666655 777788887777766553 222 33345555678999
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 382 MDRAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 382 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
+++|...|+++.. ++...+..+...+...|+.++|...+++..+.+ |+. ..+..+.......|++++|...+++.
T Consensus 525 ~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999987763 455567777888899999999999999998853 444 34444444556679999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 459 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.+ ..|+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++++.+|+++.+
T Consensus 603 L~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 603 LN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred HH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 85 3567888999999999999999999999988 56675 5566677788999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 537 YVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+..++.++...|++++|...+++..+...
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=9.5e-22 Score=205.90 Aligned_cols=468 Identities=13% Similarity=0.059 Sum_probs=339.8
Q ss_pred HhcCCChHHHHHHhhccCCCC--hh-hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhc-cCCcHHH
Q 046956 80 HSLATPLSYSTAVFNRIVNPN--TF-LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH-VLSVREG 155 (574)
Q Consensus 80 ~~~~~~~~~A~~~~~~~~~~~--~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 155 (574)
|.+.+....+++ .+...|+ .. ..-.+...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHH
Confidence 444444444444 2222232 33 3333478899999999999999999998643 44445666667776 466 777
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC-----CChhh--------------------------
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-----RNVVS-------------------------- 204 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~-------------------------- 204 (574)
..+++. .++.+...+..+...|.+.|+.++|..+++++.. |+..+
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 777543 3446788899999999999999999999998863 21111
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHhhcCC-------------------------------C-CcchHHHHHHHHHccCC
Q 046956 205 ----WTAMIVGYASVGDLVEAKTVFDLMPE-------------------------------R-SNVSWNALIGGLVKIGD 248 (574)
Q Consensus 205 ----~~~li~~~~~~g~~~~a~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~~~~ 248 (574)
.-.++..+.+.++++.+.++...-.. | +......+.-...+.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 11225566677777766665332110 0 22223333344567889
Q ss_pred hHHHHHHHhcCCC--C----chhHHHHHHHHHHhcCC---hHHHHHH-------------------------HhhCCC--
Q 046956 249 LRSARQLFDEMPE--R----NVVSYTTMIDGYAKVGD---MTSARSL-------------------------FEAAPD-- 292 (574)
Q Consensus 249 ~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~-- 292 (574)
.++|.++++...+ . +.....-++..|.+.+. ..++..+ +.....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 9999999994422 2 22344467777777766 2333222 111111
Q ss_pred -C--CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 293 -R--DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 293 -~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
+ +...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...++.+...... .. .+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~-a~ 545 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS--NE-DL 545 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cH-HH
Confidence 2 56678888888877 8999999988888765 466655445555667899999999999987654322 23 45
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPNRDVV---SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
..++..+.+.|+.++|...++...+.++. .+..+.......|++++|...+++..+ ..|+...+..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCC
Confidence 67788899999999999999988753332 233333344456999999999999998 5678778999999999999
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVAN 524 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 524 (574)
++++|...+++... ..+.+...+..+..++...|++++|++.++++ ...| +...+..+..++...|++++|+..++
T Consensus 624 ~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999997 44556788899999999999999999999988 5566 46678888899999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++++.|++..+....+++..+..+++.|.+-+++...-++
T Consensus 702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 702 LVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999998887765443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1e-22 Score=189.49 Aligned_cols=416 Identities=15% Similarity=0.129 Sum_probs=338.1
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcC
Q 046956 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVG 216 (574)
Q Consensus 140 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 216 (574)
..|..-..+.|++++|++--...-..+ +.+....-.+-..+.+..+.+....--....+ ....+|+.+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455567899999988666554433 22223333344456666666654433322222 24568999999999999
Q ss_pred ChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCCCCch--h-HHHHHHHHHHhcCChHHHHHHHhhC
Q 046956 217 DLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV--V-SYTTMIDGYAKVGDMTSARSLFEAA 290 (574)
Q Consensus 217 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (574)
++.+|+..|+.+.+. ....|..+..++...|+.+.|.+.|....+-|+ . ..+.+.......|++++|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999999764 456899999999999999999999984434333 3 3344667777889999999998876
Q ss_pred CC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh
Q 046956 291 PD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366 (574)
Q Consensus 291 ~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (574)
.. |. .++|..|...+..+|+...|+..|++..+. .|+ ...|..+...|...+.++.|...+.+..... |...
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A 286 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHA 286 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--Ccch
Confidence 54 33 468999999999999999999999999865 554 4678888888999999999999888877654 4444
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 046956 367 HVIAALVDMNAKCGNMDRAAELFETMPN--RD-VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTAC 442 (574)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~ 442 (574)
.++..+...|-..|.++-|++.|++..+ |+ ...|+.|..++...|+..+|...|.+.+. +.|+. ...+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 4788899999999999999999999874 44 46899999999999999999999999998 56665 4889999999
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 519 (574)
...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+..++++ .++|+ ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999999985 3444 578899999999999999999999988 78887 56888999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
++.+.+++..+|.-..++..|+.+|...|+..+|...++...+-.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999876544
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=3.1e-21 Score=198.77 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=189.4
Q ss_pred CCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHH
Q 046956 308 NGQPDEAVKIFSDMCSKN-VQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385 (574)
Q Consensus 308 ~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 385 (574)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++.+.+..+... ..+..++..+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHCCCHHHH
Confidence 467788888888887654 223 344566666677778888888888888877654332 2577788888888888888
Q ss_pred HHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 386 AELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 386 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
...|+++.+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+...+.+.|++++|+..++++.+
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 888887653 35678888888888899999999999988884 454 45777788888889999999999998886
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-S-------AWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..+.+...++.+..++...|++++|++.|++. ...|+. . .++.....+...|++++|+..++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44556788888888999999999999988886 333321 1 1111222334468999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+..++..+++++.+.|++++|.+.|++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999887654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8.2e-21 Score=186.11 Aligned_cols=296 Identities=16% Similarity=0.127 Sum_probs=221.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc
Q 046956 270 MIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD---EFILVSLMSACSQV 343 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~ 343 (574)
....+...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34445666777777777776654 2345677777777777777777777777766432221 24556667777777
Q ss_pred CCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC------hhHHHHHHHHHHHcCChHH
Q 046956 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD------VVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~ 415 (574)
|+++.|..++..+.+.... ....+..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 7777777777777664322 222677778888888888888888877653 11 1245667778889999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 416 AVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
|...++++.+. .|+ ...+..+...+.+.|++++|.++++++... .......++..++.+|...|++++|.+.++++
T Consensus 199 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 199 ARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999884 344 457888888999999999999999999864 22222466788999999999999999999988
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCC
Q 046956 495 -PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT---ADRWLDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 495 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 570 (574)
...|+...+..+...+.+.|++++|...++++++..|++......+ ..+.. .|+.+++..++++|.+++++++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~-~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL-DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH-HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5567777777778999999999999999999999999977544344 34442 569999999999999999999986
Q ss_pred c
Q 046956 571 C 571 (574)
Q Consensus 571 ~ 571 (574)
+
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 4
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.7e-18 Score=168.78 Aligned_cols=475 Identities=13% Similarity=0.118 Sum_probs=329.4
Q ss_pred ChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCC--CCcchHHHHHHHHhccCCcHHHHHHH
Q 046956 85 PLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV--PDKYTFPLVIKACSHVLSVREGTAIH 159 (574)
Q Consensus 85 ~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~ 159 (574)
....+..++...- +.|++..+.|.+.|.-.|++..++.+...+...... .-...|-.+.+++-..|++++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555442 567788888888888888888888888887765321 11234667778888888888888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcC----ChHHHHHHHhhcCCC-
Q 046956 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--R-NVVSWTAMIVGYASVG----DLVEAKTVFDLMPER- 231 (574)
Q Consensus 160 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~- 231 (574)
.+..+.....-+..+--|..+|.+.|+++.+...|+.+.. | +..+...|...|...+ ..+.|..++.+..++
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7776654222233445677888888888888888888764 3 3445555666666554 456666666666554
Q ss_pred --CcchHHHHHHHHHccCC------hHHHHHHHh-cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CCH
Q 046956 232 --SNVSWNALIGGLVKIGD------LRSARQLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-------RDV 295 (574)
Q Consensus 232 --~~~~~~~l~~~~~~~~~------~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~ 295 (574)
|...|..+...+....- +..|..++. ......+...|.+...+...|++++|...|..... +|.
T Consensus 411 ~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 44455555555543332 334444444 23346777888888888888888888888876542 122
Q ss_pred ------hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhH
Q 046956 296 ------VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF-ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368 (574)
Q Consensus 296 ------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (574)
.+-..+...+-..++++.|.+.|....+. .|.-. .|..++......+...+|...+..+...+..... +
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~--a 566 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN--A 566 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH--H
Confidence 22334566666778888888888888875 44433 3333332233446677788888777765443333 6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCC
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMP-----NRDVVSYCSMIKGLSI------------HGHGRQAVSLFDRMLSEGLTPD 431 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~ 431 (574)
+..++..|.+...+..|.+-|+.+. .+|+.+.-.|...|.+ .+..++|+++|.+.++.. +-|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 7777888888888888888665554 2455555555555442 245678888998888743 445
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGALL 507 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~ 507 (574)
...-+.+.-.++..|++.+|..+|.+..+. ......+|-.++.+|..+|++..|+++|+.. ..+.+....+.|.
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 567778888889999999999999999884 3345567888999999999999999999876 2345677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-------------------CCchHHHHHHHHHHhCCCc
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA-------------------DRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~ 566 (574)
.++...|++.+|.+.+..+....|.++...+.++.+..+. +..++|.++|.+|...+-+
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998888777665443 3567888888888877655
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=3.4e-18 Score=179.51 Aligned_cols=397 Identities=10% Similarity=0.008 Sum_probs=193.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcC
Q 046956 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184 (574)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 184 (574)
.-.+.+....|+.++|++++.+..... ..+...+..+..++...|++++|..+++..++.. +.+...+..++.++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334455566677777777776665421 2233346666666666777777777777766653 23344555666666667
Q ss_pred CChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCC
Q 046956 185 KEISCARKVFDEMPE--R-NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261 (574)
Q Consensus 185 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (574)
|++++|...++++.+ | +.. +..+...+...|+.++|+..++++.+.+ +
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----------------------------P 147 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----------------------------P 147 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------C
Confidence 777777766666643 2 333 5566666666666666666666655421 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CH------hHHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-C
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DV------VAWSALISGYA-----QNGQP---DEAVKIFSDMCSK-N 325 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-~ 325 (574)
.+...+..+...+...|..++|++.++..... +. .....++.... ..+++ ++|+..++.+.+. .
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 22333334444444455555555555544431 00 01111111111 11222 5566666666643 1
Q ss_pred CCCCHH-HHH----HHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC--
Q 046956 326 VQPDEF-ILV----SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-- 396 (574)
Q Consensus 326 ~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-- 396 (574)
..|+.. .+. ..+.++...|+.++|+..++.+.+.+...+.. ....+...|...|++++|+..|+++.+ |.
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 122211 111 01223334455566666666655544221111 222245555555555555555555432 11
Q ss_pred ---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 397 ---VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-----------LTPDE---VAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 397 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
......+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|+.++|+++++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1223334445555566666666665555421 01121 123334444555555555555555555
Q ss_pred hhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
. ..+.+...+..++..+...|++++|++.++++ ...|+ ...+......+...|++++|+..++++++..|+++.
T Consensus 387 ~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 387 Y--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred H--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 33334455555555555555555555555554 33343 223333334445555555555555555555555553
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.1e-18 Score=177.83 Aligned_cols=418 Identities=11% Similarity=0.014 Sum_probs=293.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
+......+.+.|++++|+..|++.++. .|+...|..+..++...|++++|+..++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455677888999999999999998765 5677788888888889999999999999988865 3456678888999999
Q ss_pred CCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCC
Q 046956 184 RKEISCARKVFDEMPER---NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (574)
.|++++|..-|..+... +......++..+........+...++.-. .+...+..+.. +......+....-+..-.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999998877654321 11111111211111111223333333221 12222222222 221111111111111110
Q ss_pred CCch---hHHHHHHHHH---HhcCChHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046956 261 ERNV---VSYTTMIDGY---AKVGDMTSARSLFEAAPD------RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328 (574)
Q Consensus 261 ~~~~---~~~~~l~~~~---~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 328 (574)
+.+. ..+..+...+ ...+++++|.+.|+...+ .+...|+.+...+...|++++|+..|++..+. .|
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 1111 1111111111 234789999999987764 24567888889999999999999999999876 34
Q ss_pred C-HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHH
Q 046956 329 D-EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMI 404 (574)
Q Consensus 329 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 404 (574)
+ ...|..+...+...|++++|...++.+.+..+.. ..++..++..+...|++++|...|++..+ | +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 4 5678888888999999999999999998875433 33788999999999999999999998873 3 566788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HH-------HHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PE-------HYACMV 475 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-------~~~~l~ 475 (574)
..+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|...|++.... .|+ .. .++...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 9999999999999999999874 454 568889999999999999999999998863 222 11 122222
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 476 DLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
..+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..|++++++.+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3344579999999999986 556654 46777889999999999999999999999776444
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=6.3e-19 Score=180.95 Aligned_cols=323 Identities=11% Similarity=0.004 Sum_probs=225.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcC---CCCchhHHHHHHHHHHhcC
Q 046956 205 WTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEM---PERNVVSYTTMIDGYAKVG 278 (574)
Q Consensus 205 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g 278 (574)
...++..+.+.|++++|+.+++..... +...+..++.+....|+++.|...++.+ .+.+...+..+...+...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 344555666666666666666665431 3334444555555666666666666632 2345566777778888888
Q ss_pred ChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHH
Q 046956 279 DMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355 (574)
Q Consensus 279 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 355 (574)
++++|...+++... .+...+..++..+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 88888888877654 346677778888888888888888888776553222 2223222 346677888888888887
Q ss_pred HHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCC
Q 046956 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQ----AVSLFDRMLSEGL 428 (574)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~ 428 (574)
+.+........ ....++..+.+.|++++|...++...+ .+...+..+...+...|++++ |...|++..+.
T Consensus 203 ~l~~~~~~~~~-~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQE-SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchh-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 76654333332 445556777888888888888887663 355677778888888888875 78888888873
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHH-H
Q 046956 429 TPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWG-A 505 (574)
Q Consensus 429 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ 505 (574)
.|+ ...+..+...+...|++++|...++++.+ ..+.+...+..+..++.+.|++++|.+.++++ ...|+...+. .
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 455 44788888888888999999999888886 33444667777888888899999999888877 4556654433 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
+..++...|+.++|+..|+++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 45677888999999999999988888754
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.2e-18 Score=169.31 Aligned_cols=509 Identities=10% Similarity=0.052 Sum_probs=372.8
Q ss_pred CCchHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHH---HHH---hCCCchHH
Q 046956 49 LQTHLHQVHSHIIKK--GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK---GYS---QNSRFIEV 120 (574)
Q Consensus 49 ~~~~~~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~---~~~---~~g~~~~a 120 (574)
+...+..++..+... ...||+.+.. +.++.++|+.+.|+..|.+..+-|+..-++++. .-. ....+..+
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgi---g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGI---GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchh---hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 444555566654443 3467776543 366789999999999998886544433333322 112 22345566
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCC--CCcchHHHHHHHHHcCCChHHHHHHHccCC
Q 046956 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD--EDVFVGTSLIDLYGKRKEISCARKVFDEMP 198 (574)
Q Consensus 121 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (574)
+.++...-... .-|+...+.|.+.+.-.|+++.+..+...+...... .-...|--+.++|...|++++|...|.+..
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 77776665543 236778888889999999999999999988876421 123356778999999999999999998876
Q ss_pred C--CCh--hhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccC----ChHHHHHHHhcCC---CCch
Q 046956 199 E--RNV--VSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIG----DLRSARQLFDEMP---ERNV 264 (574)
Q Consensus 199 ~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~ 264 (574)
. +|. ..+--+...+.+.|+++.+...|+.+.+. +..+...+...|+..+ ..+.|..++.+.. ..|.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 5 333 34556788999999999999999998653 4567777777777765 5667777776433 3566
Q ss_pred hHHHHHHHHHHhcCCh------HHHHHHHhhC-CCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCH----
Q 046956 265 VSYTTMIDGYAKVGDM------TSARSLFEAA-PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK---NVQPDE---- 330 (574)
Q Consensus 265 ~~~~~l~~~~~~~g~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~---- 330 (574)
..|-.+..++....-+ ..|..++..- ....+...|.+...+...|++.+|...|...... ...+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 6777777766554433 3333333322 2356778999999999999999999999988765 122333
Q ss_pred --HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHH
Q 046956 331 --FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIK 405 (574)
Q Consensus 331 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 405 (574)
.+-..+.......++.+.|...|..+.+..+..-. .|..++.+....+...+|...++.+. +.++..|..+..
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId--~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID--AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH--HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 23334556667788999999999999987765544 46666666666788999999999887 367778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcc------------CcHHHHHHHHHHhHhhcCCCCcHHHHH
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHV------------GLVEDGWRFFEAMQNVYAIVPSPEHYA 472 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~p~~~~~~ 472 (574)
.+.....+..|.+-|....+.- ..+|..+...|.+.|.+. +..++|+++|.++.+ ..+.|...-|
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAAN 650 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAAN 650 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhcc
Confidence 9998888888888777665532 236777777777755432 346788999998887 5666777788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCchhHHHHHHHHHhcC
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMP--VEPHASAWGALLGACKLYSDIELGELVANRLFEL--EPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 548 (574)
-++-+++..|++.+|..+|.+.. ......+|..+...|...|++..|++.|+..++. ..+++.+...|+.++.+.|
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 88899999999999999999882 1224567889999999999999999999999986 3567889999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 046956 549 RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~~ 565 (574)
++.+|.+.+.......+
T Consensus 731 ~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAP 747 (1018)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 99999999988776554
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.9e-18 Score=177.40 Aligned_cols=346 Identities=9% Similarity=-0.032 Sum_probs=277.7
Q ss_pred hcCChHHHHHHHhhcCCC------CcchHHHHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHH
Q 046956 214 SVGDLVEAKTVFDLMPER------SNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSAR 284 (574)
Q Consensus 214 ~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 284 (574)
+..+|+.-.-.|....++ +......++..+.+.|+.++|..+++... +.+......++......|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 444454444444443321 33455667788899999999999998442 455667777788888999999999
Q ss_pred HHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC
Q 046956 285 SLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361 (574)
Q Consensus 285 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 361 (574)
..|+++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...+..+....+
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 99998864 356788899999999999999999999998762 33567788888899999999999999998887766
Q ss_pred CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437 (574)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 437 (574)
.+.. .+..+. .+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...+..
T Consensus 176 ~~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 176 PRGD--MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CCHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 5544 343333 478899999999999987642 23344556778889999999999999999853 334557888
Q ss_pred HHHHHhccCcHHH----HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 046956 438 VLTACSHVGLVED----GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACK 511 (574)
Q Consensus 438 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 511 (574)
+...+...|++++ |...++++.+ ..+.+...+..++..+...|++++|...++++ ...|+ ...+..+..++.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999986 8999999986 34456788999999999999999999999988 45565 456667778999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
..|++++|+..++++++.+|+++..+..++.++...|++++|...+++..+...+
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999998887878899999999999999999999877654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=4.5e-18 Score=178.54 Aligned_cols=394 Identities=9% Similarity=-0.021 Sum_probs=281.2
Q ss_pred CcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHH
Q 046956 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVG 211 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 211 (574)
+.....-.+......|+.++|++++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444455566667777777777777776532 33444567777777777777777777777543 234556666667
Q ss_pred HHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046956 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 212 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
+...|++++|+..+++..+.+ +.+.. +..+..++...|+.++|+..++++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~----------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA----------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC----------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777766654332 33445 7778888889999999999998876
Q ss_pred C---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhc-----cCCc---chHHHHHH
Q 046956 292 D---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE------FILVSLMSACSQ-----VGNL---DLSNWVDS 354 (574)
Q Consensus 292 ~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~-----~~~~---~~a~~~~~ 354 (574)
+ .+...+..+..++...+..++|+..++.... .|+. ......+..... .+++ +.|...++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 5 3566777788888899999999999987654 2321 011122222211 1223 56777788
Q ss_pred HHHHh-CCCCChhhHH----HHHHHHhHhcCCHHHHHHHHhhCCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 355 YLSRS-HMDLSRAHVI----AALVDMNAKCGNMDRAAELFETMPNRD---V-VSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 355 ~~~~~-~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
.+.+. ...|+....+ ...+..+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 87754 2222211011 111234457799999999999988532 1 1222357789999999999999999887
Q ss_pred CCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC------------Cc---HHHHHHHHHHHhhcCCHH
Q 046956 426 EGLTPD-----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV------------PS---PEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 426 ~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------p~---~~~~~~l~~~~~~~g~~~ 485 (574)
.. |. ......+..++...|++++|.++++.+... .+ |+ ...+..++..+...|+++
T Consensus 301 ~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 301 HP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred cC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 43 32 235666777889999999999999999863 22 22 234567788899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 486 SAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 486 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+|++.++++ ...| +...+..+...+...|++++|++.++++++++|+++..+..++..+...|++++|..+++++++.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999998 4445 46677788899999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 046956 564 GL 565 (574)
Q Consensus 564 ~~ 565 (574)
.+
T Consensus 457 ~P 458 (765)
T PRK10049 457 EP 458 (765)
T ss_pred CC
Confidence 54
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.2e-18 Score=170.82 Aligned_cols=228 Identities=17% Similarity=0.153 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh---hhHHHHHHH
Q 046956 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR---AHVIAALVD 374 (574)
Q Consensus 298 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 374 (574)
+..++..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|...++.+.+.+..... ...+..++.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3344444444444444444444444321 223334444444444444444444444444433322211 113455677
Q ss_pred HhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 375 MNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
.+.+.|++++|...|+++.+ | +...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 77788888888888887763 2 35577788888999999999999999998753222235678888999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKL---YSDIELGELVANRLF 527 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 527 (574)
...++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++...+++++
T Consensus 269 ~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 269 LEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 9999998863 466666788899999999999999999876 667888888888766553 558888988888888
Q ss_pred hh
Q 046956 528 EL 529 (574)
Q Consensus 528 ~~ 529 (574)
+.
T Consensus 346 ~~ 347 (389)
T PRK11788 346 GE 347 (389)
T ss_pred HH
Confidence 63
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.8e-16 Score=163.26 Aligned_cols=433 Identities=11% Similarity=0.033 Sum_probs=294.0
Q ss_pred HHhcCCChHHHHHHhhccCC--CCh--hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cchHHHH--HHHHhccCC
Q 046956 79 CHSLATPLSYSTAVFNRIVN--PNT--FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD-KYTFPLV--IKACSHVLS 151 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l--l~~~~~~~~ 151 (574)
...+.|+++.|+..|++... |+. ..+ .++..+...|+.++|+..+++.. .|+ ...+..+ ...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 46789999999999999863 432 233 88888889999999999999987 232 2233333 457778899
Q ss_pred cHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC--ChhhHHHHHHHHHhcCChHHHHHHHhhcC
Q 046956 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--NVVSWTAMIVGYASVGDLVEAKTVFDLMP 229 (574)
Q Consensus 152 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 229 (574)
+++|.++++++.+.. +.+...+..++..+...++.++|+..++++... +...+..++..+...++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999886 334667778888999999999999999999864 43344333333333566666999999887
Q ss_pred CC---CcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 046956 230 ER---SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306 (574)
Q Consensus 230 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 306 (574)
+. +...+..+..++.+.|-...|.++...- |+..+-...... +.+.|.+..+-...++. .
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~ 259 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------S 259 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--ccccCHHHHHHH-----HHHHHHHHHhhcccccc----------c
Confidence 53 3445566677777777777777777643 111110000000 01111111111100000 0
Q ss_pred hCC---CchHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 307 QNG---QPDEAVKIFSDMCSK-NVQPDE-F----ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 307 ~~~---~~~~A~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
... -.+.|+.-++.+... +..|.. . ...-.+.++...|+..+++..++.+...+.+.+.. +...++++|.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y-~~~a~adayl 338 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY-ARRWAASAYI 338 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHH
Confidence 011 134455555555442 122321 1 12234456677778888888888888777665555 7778888888
Q ss_pred hcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH--H-H
Q 046956 378 KCGNMDRAAELFETMPNR---------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-----------TPDE--V-A 434 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~--~-~ 434 (574)
..+++++|+.+|..+... +......|.-+|...+++++|..+++++.+... .||+ . .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 888888888888876531 222346677888888999999999998887311 1322 2 4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 512 (574)
+..++..+...|+..+|++.++++.. .-|-|......+.+.+...|.+.+|.+.++.+ ...|+. .+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 45566778889999999999999986 66778889999999999999999999999877 456654 445566688888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 513 YSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.+++++|..+.+.+++..|+++..-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999988544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=7.9e-16 Score=158.51 Aligned_cols=429 Identities=12% Similarity=0.022 Sum_probs=276.6
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCc--chHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC-CcchHHHH--HHHHHc
Q 046956 109 KGYSQNSRFIEVFTIFVRLIREEAVPDK--YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE-DVFVGTSL--IDLYGK 183 (574)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l--i~~~~~ 183 (574)
-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.. .| +...+..+ ...+..
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 34577888888888888887763 333 233 66777777788888888888876 22 22233333 557777
Q ss_pred CCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHc--cCChHHHHHHHhc
Q 046956 184 RKEISCARKVFDEMPE--R-NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK--IGDLRSARQLFDE 258 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 258 (574)
.|++++|.++|+++.+ | +...+..++..+...++.++|++.++++.+.++.....++.++.. .++..+|.+.+++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7888888888888875 2 445566677777888888888888888776543322222222222 3333334444442
Q ss_pred CC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 046956 259 MP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 259 ~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
+. +.+...+..+.....+.|-...|.++..+-++- +...+..+ +.+.|.+..+. +..++.
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~----a~~~~~---- 258 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRM----AVLPTR---- 258 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhh----cccccc----
Confidence 21 223444444555555555555555444443310 00000000 01111111111 100000
Q ss_pred HHHHHHhccCCc---chHHHHHHHHHHh-CCCCChh----hHHHHHHHHhHhcCCHHHHHHHHhhCCCC----ChhHHHH
Q 046956 335 SLMSACSQVGNL---DLSNWVDSYLSRS-HMDLSRA----HVIAALVDMNAKCGNMDRAAELFETMPNR----DVVSYCS 402 (574)
Q Consensus 335 ~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 402 (574)
...+++ +.+..-++.+... +..|... ....-.+-++...|++.++++.|+.+..+ ...+-..
T Consensus 259 ------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 259 ------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred ------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 011122 3344444444432 2222211 12234456678889999999999999842 3346677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC----------CCCc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGL-----TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA----------IVPS 467 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~ 467 (574)
+..+|...+++++|..+|+++..... .++......|.-++...+++++|..+++.+.+... -.|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 89999999999999999999876431 22333457888899999999999999999987211 0133
Q ss_pred H---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 468 P---EHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 468 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+ ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+..++|++..+...++.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 34455678889999999999999998 4445 67778888899999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCc
Q 046956 543 IYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.+...|+|.+|..+.+.+.+..++
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCC
Confidence 999999999999999888765543
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.4e-16 Score=142.17 Aligned_cols=437 Identities=12% Similarity=0.112 Sum_probs=315.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCCcc----hHHHHHHHH
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL-VIKACSHVLSVREGTAIHAAVIRWGVDEDVF----VGTSLIDLY 181 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~ 181 (574)
+.+-|..+....+|+..|+-+.+....||...... +-+.+.+.+++..|.++++..++.-+..+.. +.+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44566677788899999999988888888765543 3456778889999999999888764333322 344445567
Q ss_pred HcCCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHhhcCC----------------CCcchHHHH----
Q 046956 182 GKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----------------RSNVSWNAL---- 239 (574)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~l---- 239 (574)
.+.|.++.|..-|+...+ |+..+--.|+-++..-|+.++..+.|.+|.. |+....+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998875 7777666667777778999999999998853 111222221
Q ss_pred -HHHHHccC--ChHHHH----HHHhcCCCCchhH---H----------H--------HHHHHHHhcCChHHHHHHHhhCC
Q 046956 240 -IGGLVKIG--DLRSAR----QLFDEMPERNVVS---Y----------T--------TMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 240 -~~~~~~~~--~~~~a~----~~~~~~~~~~~~~---~----------~--------~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
+.-..+.+ +-+++. ++..-+..|+... | . .-.--|.+.|+++.|++++....
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 12222221 122222 1111111222110 0 0 11234788999999999988877
Q ss_pred CCCHhHHH----HH-HHHHHh-CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh
Q 046956 292 DRDVVAWS----AL-ISGYAQ-NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365 (574)
Q Consensus 292 ~~~~~~~~----~l-i~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (574)
+.|..+-. .| +--|.+ ..++..|.+.-+...... .-+......-.......|++++|...+.+..........
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 65543322 22 122222 446777777776665432 223333333333345678999999999999877665555
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 366 AHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
. ...+.-.+...|++++|+++|-++. ..++.+...+...|-...+..+|++++.+.... ++.|+.....|...|
T Consensus 526 a--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 A--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred H--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 3 4456777889999999999998776 467777788888899999999999999887763 344566889999999
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALL-GACKLYSDIELGE 520 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~ 520 (574)
-+.|+-.+|.+++-.--+ -++-+.++..-|..-|....-+++|+.+|++. -++|+..-|..++ +.+.+.|++++|.
T Consensus 603 dqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999998877665 67888999999999999999999999999998 6789999999888 5557899999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
.+|+...+..|.+...+..|..++...|-
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999888774
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=1.1e-14 Score=137.53 Aligned_cols=498 Identities=12% Similarity=0.060 Sum_probs=383.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
.++.....+. ++.++..|-..+ .....+.|+-++.+.+ +.+...|. ++++-.-++.|..++...++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV-----elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV-----ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH-----hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 3444444433 245555665444 3445556777777765 33344444 445566677888888887766
Q ss_pred CCCCCcchHHHHHHHHhccCCcHHHHHHHHHH----HHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC------C
Q 046956 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAV----IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE------R 200 (574)
Q Consensus 131 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~ 200 (574)
++.+...|.+....=-..|+.+...++..+- ...|+..+...|..=...+-..|..-....+...+.. .
T Consensus 436 -iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 436 -IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 5557777776666666777888777776653 3457777777777777777777877777777766643 2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHH
Q 046956 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGY 274 (574)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 274 (574)
-..+|..-...|.+.+.++-|..+|....+- +...|......--..|..+.-..++++.. +.....|......+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 3457888888888888888888888877653 45567766666677788888888877332 34556677777888
Q ss_pred HhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHH
Q 046956 275 AKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351 (574)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 351 (574)
-..|++..|..++....+ .+...|.+-+.....+.++++|..+|.+.... .|+...|..-+..-...++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999887654 46778999999999999999999999998764 6777888777777777899999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046956 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 428 (574)
+++..++.-+.... +|..+++.+.+.++++.|.+.|..-.+ | .+..|-.+...--+.|..-.|..++++..-.+
T Consensus 673 llEe~lk~fp~f~K--l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 673 LLEEALKSFPDFHK--LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHhCCchHH--HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 99999887655544 789999999999999999999987764 4 44678888888888899999999999988764
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 508 (574)
+-+...|...+..-.+.|+.+.|..+..++.+ .++.+-..|..-|....+.++-..+.+.+++... |+.....+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHH
Confidence 44667899999999999999999999999998 6777788898888888888888888888888754 4455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCccc
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~ 573 (574)
.+....+++.|..-|.++++.+|++..+|..+-..+.+.|.-++-.+++.+..... |.-|..|
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W 888 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHH
Confidence 78888899999999999999999999999999999999999999999998886544 4555554
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.8e-13 Score=121.91 Aligned_cols=479 Identities=15% Similarity=0.150 Sum_probs=351.9
Q ss_pred HHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHH
Q 046956 78 LCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 154 (574)
+.--..++...|.++|++.. ..+...|-..+..=.++.....|..++++....-...|.. |-..+-.=-..|++..
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHH
Confidence 44456788999999999885 5677789999999999999999999999988763333333 3233333346799999
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC-
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER- 231 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 231 (574)
|.++|+...+. +|+...|++.|+.=.+.+.++.|..++++.. .|++.+|--...--.+.|+...|..+|+...+.
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999998875 7999999999999999999999999999876 599999999999889999999999999988752
Q ss_pred -----CcchHHHHHHHHHccCChHHHHHHHh----cCCC-CchhHHHHHHHHHHhcCChHHHHHHH--------hhCCC-
Q 046956 232 -----SNVSWNALIGGLVKIGDLRSARQLFD----EMPE-RNVVSYTTMIDGYAKVGDMTSARSLF--------EAAPD- 292 (574)
Q Consensus 232 -----~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~- 292 (574)
+...+++...--.++..++.|..+|. .+.. .....|..+...--+-|+.....+.. +....
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 33456666666667788999999988 3422 12456666666655666655444432 22222
Q ss_pred --CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCCcchHHHHHHHHHHhC
Q 046956 293 --RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE-------FILVSLMSAC---SQVGNLDLSNWVDSYLSRSH 360 (574)
Q Consensus 293 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~ 360 (574)
-|-.+|-..+..--..|+.+...++|++.... ++|-. ..|.-+-.+| ....+++.+.++++..++.-
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 25678888888888899999999999999875 55532 2233332333 34678899999999888732
Q ss_pred CC--CChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046956 361 MD--LSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436 (574)
Q Consensus 361 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 436 (574)
+. .+-..++...+..-.++.++..|.+++.... -|...+|...|..-.+.+++|.+..+|++.++-+ +-+..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 21 1112233344455568899999999998877 3778899999999999999999999999999954 34567898
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACK---- 511 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~---- 511 (574)
.....-...|+.+.|..+|+-++....+......|.+.|+.-...|.++.|..+++++ ...+...+|-+....-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 8888888999999999999999986444444567778888888999999999999988 44455567766653322
Q ss_pred -hcC-----------CHHHHHHHHHHHHhh----CCCC--chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 512 -LYS-----------DIELGELVANRLFEL----EPQN--AGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 512 -~~~-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+.+ ....|..+|+++... .|.. ...+...-++-...|...+...+-++|.
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 333 567888999988764 2321 1233333444455666666666655554
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=2.2e-12 Score=122.18 Aligned_cols=428 Identities=10% Similarity=0.110 Sum_probs=294.0
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC-
Q 046956 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE- 199 (574)
Q Consensus 121 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 199 (574)
.+++++.++. ++-+...|... ....+.+.|+.++....+.- +.+...|.+ |++..-++.|..++++..+
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 3445555544 22233334333 23345555777777766652 333333333 3444556677777766654
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHhhcCC--------CCcchHHHHHHHHHccCChHHHHHHHh-----cCC-CCc
Q 046956 200 --RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--------RSNVSWNALIGGLVKIGDLRSARQLFD-----EMP-ERN 263 (574)
Q Consensus 200 --~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~-~~~ 263 (574)
.+...|.+-...--.+|+.+...+++.+-.. -+...|..-...|-..|..-.+..+.. +.. +..
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 4566676666666667777777766665432 133344444555555555555555544 111 133
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340 (574)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 340 (574)
..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+.-..+|++.... ++-....|......+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 45777778888888888888888876654 35566777776666778888888888888776 333445555556666
Q ss_pred hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
-..|++..|..++..+.+.++.. .. ++..-+.......+++.|..+|.+.. .++...|.--+......++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pns-ee-iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNS-EE-IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCc-HH-HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 77788888888888888776653 23 77788888888888888888888776 4666777766666677788888888
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C
Q 046956 419 LFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-V 496 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 496 (574)
++++.++ .-|+.. .|..+.+.+.+.++++.|...|..-.+ ..+-....|-.|.+.-.+.|++-.|..++++.. .
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8888877 466654 777777788888888888888877665 555566778888888888888888888888872 2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------------------------CchhHHHHHHHHH
Q 046956 497 EP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ------------------------------NAGSYVLLSNIYA 545 (574)
Q Consensus 497 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~ 545 (574)
+| +...|...+..-.+.|+.+.|..++.++++..|+ |+..+...+.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 34 5677888888888888888888888877766555 4566777888888
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 046956 546 TADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+++.|++.|.+..+.+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 88899999999999887764
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.8e-14 Score=131.56 Aligned_cols=215 Identities=15% Similarity=0.138 Sum_probs=178.7
Q ss_pred HhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHH
Q 046956 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQA 416 (574)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 416 (574)
+.-.|+.-.+..-++.+++....+.. .|-.+..+|....+.++....|++..+ .|+.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 34467778888888888887766655 477788889999999999999988773 4677888888888888999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 046956 417 VSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM- 494 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (574)
..=|++.+. +.|+. ..|..+..+..+.+.++++...|++.++ .++--+++|+.....+..++++++|.+.|+..
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999998 56665 4888888888899999999999999998 77778899999999999999999999999887
Q ss_pred CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 495 PVEPH---------ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 495 ~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..+|. +.+...++..-. .+++.+|+.++.++++++|..-.+|..|+.+-.+.|+.++|.++|++..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 222233332223 3899999999999999999999999999999999999999999998754
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=9.9e-13 Score=129.36 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=218.5
Q ss_pred HHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHH
Q 046956 79 CHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 155 (574)
.+++ |++++|.+++.+++ +.+...|.+|...|-+.|+.+++...+-..-... +-|...|..+.....+.|++++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3444 89999999998886 3466789999999999999998887765544332 22557788888878888999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCCh----h----hHHHHHHHHHhcCChHHHHHHHhh
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV----V----SWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.-+|.+.++.. +++...+---+.+|-+.|+...|..-|.++.+.++ . .-...+..+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999988876 44555555667788888999988888888765222 1 222345566667777888888877
Q ss_pred cCCC-----CcchHHHHHHHHHccCChHHHHHHHhcCCC-------------------------------CchhH-HHHH
Q 046956 228 MPER-----SNVSWNALIGGLVKIGDLRSARQLFDEMPE-------------------------------RNVVS-YTTM 270 (574)
Q Consensus 228 ~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~~-~~~l 270 (574)
.... +...++.++..+.+...++.+......... .+..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 6542 445677788888887777777666552211 12222 1111
Q ss_pred HHHHHhcCChHHHHHHHhhCC----CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCc
Q 046956 271 IDGYAKVGDMTSARSLFEAAP----DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 346 (574)
.-...+.++..+++.-|-... ..+...|..+..+|...|++.+|+.+|..+......-+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 122233344444444332221 2345678888888888999999999988888765555677888888888888888
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (574)
+.|.+.++.++...+.... +...|...+.+.|+.++|.+++..+..||
T Consensus 466 e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999888888876554443 56778888888899998888888876554
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1e-12 Score=118.38 Aligned_cols=410 Identities=11% Similarity=0.100 Sum_probs=255.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCC-------------------------hHHHHHH
Q 046956 40 ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS--LATP-------------------------LSYSTAV 92 (574)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~~~~-------------------------~~~A~~~ 92 (574)
++.++. .+...+.--+++.|...|.+.++.+-..|+ .+.+ ...+ -+-|. +
T Consensus 122 L~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~-~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L 198 (625)
T KOG4422|consen 122 LLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELF-RLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-L 198 (625)
T ss_pred HHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHH-HHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-H
Confidence 444443 345566677999999999988888777776 3322 2111 12233 3
Q ss_pred hhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcc
Q 046956 93 FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172 (574)
Q Consensus 93 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 172 (574)
+-+..+++..++..||.++|+-...++|.++|++......+.+..+||.+|.+.+-.. ..+++.+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 3344456778999999999999999999999999998888899999999998765332 388999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHH----ccCC----CCChhhHHHHHHHHHhcCChHH-HHHHHhhcCC--------C----
Q 046956 173 VGTSLIDLYGKRKEISCARKVF----DEMP----ERNVVSWTAMIVGYASVGDLVE-AKTVFDLMPE--------R---- 231 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~--------~---- 231 (574)
|+|+++++..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.++..+ +..++.++.. |
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 9999999999999988765544 4444 4888999999999998887754 4444433321 1
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCC
Q 046956 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNG 309 (574)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 309 (574)
|...|...+..|.+..+.+.|.++..-+...+ ++ ..+.. ....-|..+....|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N~-------~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---------------NW-------KFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---------------ch-------hhcChHHHHHHHHHHHHHHHHHHH
Confidence 23334444455555555444444433110000 00 00000 11234556667777778
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
..+..+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...... +...+...+++.+
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-l~eeil~~L~~~k--------- 482 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-LREEILMLLARDK--------- 482 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-HHHHHHHHHhcCC---------
Confidence 888888888888877778888888888888888888888888888887777554443 3333333333322
Q ss_pred hhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 390 ETMPNRDVV---SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 390 ~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
..|+.. -+.....-++ ..-.+.....-.+|.+..++|. ..+..+-.+.+.|..++|.+++....+++.--|
T Consensus 483 ---~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 483 ---LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred ---CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 012111 1111111111 1111222222334444333333 344444456677777777777777755433333
Q ss_pred cHHHHH---HHHHHHhhcCCHHHHHHHHHhC
Q 046956 467 SPEHYA---CMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 467 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
-....+ .+++.-.+.+....|...++-+
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333333 4555556667777777777666
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=7.3e-17 Score=149.57 Aligned_cols=257 Identities=16% Similarity=0.135 Sum_probs=112.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL-VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (574)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.... . .+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-~-~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-Q-DYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-cccccccc-ccc
Confidence 355566677777777777554433223333333 3344445556777777777777776554422 2 56666666 688
Q ss_pred CCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 380 GNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 380 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
+++++|.+++.... .++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88899988887664 3566677888888999999999999999987643 34556688888899999999999999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP--VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
++.+ ..+.|......++..+...|+.+++.++++... ...++..|..+..++...|++++|+..++++.+.+|+|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9997 344457888899999999999999888887761 233455778888999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+...+++++...|+.++|..+.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887653
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.6e-13 Score=123.34 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=203.7
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHh-HHHHHHHHHHhCCCchHHHHHHH
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV-AWSALISGYAQNGQPDEAVKIFS 319 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~ 319 (574)
-.+.+.|....|+..+......-+..|.+-+....-..+.+.+..+...+...+.. .--.+..++....+.+++..-.+
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e 251 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKE 251 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554332333334444443333333444333333333322111 11123345555556777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC-CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChh
Q 046956 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398 (574)
Q Consensus 320 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (574)
.....|++-+...-+....+.....++++|+.+|+.+.+..+ ..+...+|+.++-.-..+.++.---...-.+.+--+.
T Consensus 252 ~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E 331 (559)
T KOG1155|consen 252 RLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE 331 (559)
T ss_pred HHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence 777777666666656666666677778888888888877643 2223334554443322222222211222223333445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
|..++..-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|.+.++.+++ -.+.|-..|..|+++
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 666677777778888888888888887 45655 4777777788888888888888888885 445566778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
|.-.+...-|+-+|+++ ..+| |...|.++...|.+.++.++|++.|++++...-.+..++..|+++|.+.++.++|..
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888888888887 5555 577888888888888888888888888888877777888888888888888888888
Q ss_pred HHHHHHh
Q 046956 556 VRSKMKE 562 (574)
Q Consensus 556 ~~~~~~~ 562 (574)
.+++.++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 8877664
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.3e-13 Score=121.15 Aligned_cols=392 Identities=14% Similarity=0.161 Sum_probs=278.1
Q ss_pred chHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC--C-cchHHHHHHHHHc
Q 046956 172 FVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--S-NVSWNALIGGLVK 245 (574)
Q Consensus 172 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~ 245 (574)
..|.....-=..++++..|.++|++..+ .+...|--.+..-.++..+..|..++++.... - ...|...+..--.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3344334444445666677777777664 45566766777777777777777777766542 1 1233334444456
Q ss_pred cCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 246 IGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 246 ~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
.|++..|.++|+ +. +|+...|.+.|+.-.+-..++.|..++++.. .|++.+|--....-.+.|+...|..+|+.
T Consensus 154 LgNi~gaRqiferW~~w-~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW-EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred hcccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 778888888887 33 6888888888888888888888988888743 58888888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHH----hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHh------
Q 046956 321 MCSKNVQPDEFILVSLMSAC----SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE------ 390 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------ 390 (574)
..+. .-|...-..+..++ ..+...+.|..+++..+..-+......+|..+...--+-|+.....+..-
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 7654 22233323333333 44566788888888888776665555567766666666677655554432
Q ss_pred --hCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH----H----HHhccCcHHHHHHHH
Q 046956 391 --TMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVL----T----ACSHVGLVEDGWRFF 455 (574)
Q Consensus 391 --~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~----~----~~~~~g~~~~a~~~~ 455 (574)
.+.+ -|-.+|--.++.--..|+.+...++|++.+.. ++|-.. .|...+ + .-....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222 25567777888878889999999999999875 566432 222111 1 123467889999999
Q ss_pred HHhHhhcCCCCcHHHHHH----HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 456 EAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
+.+++ -++....++.. .+....++.++..|.+++..+ +..|...++...+..-.+.++++....+|++.++-.
T Consensus 390 q~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 390 QACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99886 45544555544 344556888999999999877 778889999999988889999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 569 (574)
|.+..+|...+.+-...|+++.|..+|.-++.+.....|
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999999999999999999999999988877654444
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.1e-13 Score=133.93 Aligned_cols=352 Identities=14% Similarity=0.122 Sum_probs=218.7
Q ss_pred HHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCChHHH
Q 046956 210 VGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSA 283 (574)
Q Consensus 210 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (574)
..+...|+.++|.+++.++.+. ....|..|...|-..|+.+++...+- .+.+.|...|..+.....+.|++++|
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3344458888888888887664 45567777777777777777766655 45456667777777777777777777
Q ss_pred HHHHhhCCCC---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCcchHHHHHHHH
Q 046956 284 RSLFEAAPDR---DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI----LVSLMSACSQVGNLDLSNWVDSYL 356 (574)
Q Consensus 284 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~ 356 (574)
.-.|.+..+. +...+---+..|-+.|+...|+..|.++.....+.|..- ...++..+...++.+.|.+.++..
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777766652 333444455667777777777777777776532222211 222233344444445555555444
Q ss_pred HHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCC
Q 046956 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS--EGLTP 430 (574)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p 430 (574)
...+........++.++.++.+...++.|......... +|..-|..- ..++ .-+.-... .++.+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCc
Confidence 43222222222445555555555555555444433321 111111000 0000 00000001 12233
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC--CcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV--PSPEHYACMVDLLGRTGHLKSAYELLNSMPV---EPHASAWGA 505 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~ 505 (574)
+...+ .+.-++.+.+..+....+....... .+. -+...|..+.++|...|++.+|+++|..+.. ..+...|..
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 33331 2222344444444444444444443 433 3468899999999999999999999998832 234668999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCccc
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~ 573 (574)
+...|...|.+++|++.|++++...|++..+...|+.+|.+.|+.++|.+++..+...+.+.-+++.|
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999887666555666665
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=3.8e-12 Score=114.71 Aligned_cols=415 Identities=16% Similarity=0.205 Sum_probs=273.2
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh--ccCCcHHHH-HHHHHHHHhCCCCCcchHHHH
Q 046956 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS--HVLSVREGT-AIHAAVIRWGVDEDVFVGTSL 177 (574)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l 177 (574)
+.+-|.++. +..+|...++.-+|+.|.+.|+..+...-..|++..+ ...++--++ +.|-.|...| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345555555 4557899999999999999998877776666665433 333333222 3344444444 3333333
Q ss_pred HHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHHHHHHHHccCChHHHH
Q 046956 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR 253 (574)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 253 (574)
+.|+..+ ++-+...++..++..+|.++++--..+.|.++|++.... +..+||.+|.+-.-..+-+...
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~ 262 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVA 262 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHH
Confidence 2344433 555555667789999999999999999999999987653 6778888887665544433333
Q ss_pred HHHh-cCCCCchhHHHHHHHHHHhcCChHHHHHHH----hhCC----CCCHhHHHHHHHHHHhCCCchH-HHHHHHHHHH
Q 046956 254 QLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLF----EAAP----DRDVVAWSALISGYAQNGQPDE-AVKIFSDMCS 323 (574)
Q Consensus 254 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~ 323 (574)
+... +| .||..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+++.++..+ |..++.+...
T Consensus 263 EMisqkm-~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 263 EMISQKM-TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHhhc-CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 3333 55 899999999999999999988876554 4443 4788899999999999888754 4555555443
Q ss_pred ----CCCC---C-CHHHHHHHHHHHhccCCcchHHHHHHHHHHh------CCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 324 ----KNVQ---P-DEFILVSLMSACSQVGNLDLSNWVDSYLSRS------HMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 324 ----~~~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
+.++ | |...|...+..|.+..+.+.|.++...+... |........|..+..+.+.....+.-...|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 4567788888999999999999888776532 222222324567777888888889889999
Q ss_pred hhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-c--------HHH-----H
Q 046956 390 ETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-L--------VED-----G 451 (574)
Q Consensus 390 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~--------~~~-----a 451 (574)
+.+.. |+..+-..++++.-..|.++-.-++|..++..|..-+......++..+++.. . +.. |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 88873 6777777788888888888888888888887764444333222333233222 0 000 1
Q ss_pred HHHH-------HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHH
Q 046956 452 WRFF-------EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPHASAWGALLGACKLYSDIE 517 (574)
Q Consensus 452 ~~~~-------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~ 517 (574)
..++ .++. ...-.....+.++-.+.+.|..++|.+++... +..|.......++......++..
T Consensus 502 ad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1111 1122 22334456677777888889998888887665 12233333335556667778888
Q ss_pred HHHHHHHHHHhhCCC
Q 046956 518 LGELVANRLFELEPQ 532 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~ 532 (574)
.|...++-+...+-+
T Consensus 579 qA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 579 QAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHHcCch
Confidence 888888888665433
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.4e-13 Score=121.33 Aligned_cols=352 Identities=11% Similarity=0.104 Sum_probs=255.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchh--HHHHHHHHHHhc
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SYTTMIDGYAKV 277 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~ 277 (574)
.|...+-.....+.+.|....|++.|......-+..|.+.+....-..+.+.+..+..++ ..|.. .--.+..++-..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-PSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-cccchHHHHHHHHHHHHHH
Confidence 455555555566778899999999999888766777777666666666666666666555 32211 112234555555
Q ss_pred CChHHHHHHHhhCCC---C-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCcc-hHH
Q 046956 278 GDMTSARSLFEAAPD---R-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV--QPDEFILVSLMSACSQVGNLD-LSN 350 (574)
Q Consensus 278 g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~-~a~ 350 (574)
.+.+++..-.+.... + +...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.-....++. .|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 666666655554433 2 222233334455677899999999999998731 126678887776543322221 111
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
.++ .+ ....|. +...+++.|.-.++.++|...|+...+ .....|+.|..-|...++...|++.|++.++
T Consensus 321 ~v~-~i--dKyR~E---TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 321 NVS-NI--DKYRPE---TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHH-Hh--ccCCcc---ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 111 11 111121 566788889999999999999999885 3456899999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 046956 428 LTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWG 504 (574)
Q Consensus 428 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 504 (574)
+.| |-..|..|.++|.-.+...=|+-+|+++.. -.+-|...|.+|+++|.+.++.++|++.|++. ..+.+...+.
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 455 556999999999999999999999999986 44556899999999999999999999999988 2344667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 505 ALLGACKLYSDIELGELVANRLFE-------LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+...+.+.++.++|.+.|++.++ ..|....+..-|+.-+.+.+++++|..+......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999999999999999999999887 3455556667788889999999998876655543
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=6e-14 Score=126.98 Aligned_cols=202 Identities=13% Similarity=0.203 Sum_probs=107.3
Q ss_pred HHhcCChHHHHHHHhhCCCCCHhHHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHH
Q 046956 274 YAKVGDMTSARSLFEAAPDRDVVAWSAL---ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
....|++++|.+.|++....|..+-.+| .-.+-..|+.++|++.|-++... +..+..+...+...|....+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3345666666666666655544332222 22344556666666666555432 2334455555555665555555555
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
+++.+... +.|+.+.+.+.|...|-+.|+-..|..++-.-- .-++.+..=|...|....-+++++.+|++..-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 55544332 222222256666666666666666655543322 12444444455555555555666666665544
Q ss_pred CCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC
Q 046956 428 LTPDEVAFTIVLTAC-SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 482 (574)
+.|+..-|..++..| .+.|++.+|..+|+...+ .++.|..+..-|++.+...|
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 456666665555443 345666666666666655 55556666665665555554
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6.5e-14 Score=133.30 Aligned_cols=279 Identities=15% Similarity=0.042 Sum_probs=222.2
Q ss_pred ChHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCcchHHHH-
Q 046956 279 DMTSARSLFEAAPD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWV- 352 (574)
Q Consensus 279 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~- 352 (574)
+..+|+..|..+.. .| ......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+. -+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 56888999988554 23 3455678899999999999999999998752 122677888888765332 11222
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046956 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429 (574)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 429 (574)
-+.+.+... ..+..|-++++.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 410 aq~Li~~~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 223333332 22338999999999999999999999998853 557888888889999999999999999886 56
Q ss_pred CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 046956 430 PDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGAL 506 (574)
Q Consensus 430 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 506 (574)
|... .|..+...|.+.++++.|.-.|+++.+ --+-+......++..+.+.|+.++|+.+++++ ..+| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 6654 888899999999999999999999985 23334566777888999999999999999998 4444 45555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
...+...+++++|+..++++.++.|++..++..++.+|.+.|+.+.|+.-|.-+.+-+++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6778889999999999999999999999999999999999999999999998887655543
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=3.3e-10 Score=107.65 Aligned_cols=480 Identities=14% Similarity=0.178 Sum_probs=298.0
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC------CCC
Q 046956 61 IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE------AVP 134 (574)
Q Consensus 61 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~ 134 (574)
.+..++....+|...+ .+....+-++.+.+++++..+-++..-+-.|.-++..+++++|.+.+....... .+.
T Consensus 130 raLpvtqH~rIW~lyl-~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS 208 (835)
T KOG2047|consen 130 RALPVTQHDRIWDLYL-KFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS 208 (835)
T ss_pred HhCchHhhccchHHHH-HHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc
Confidence 3334455556666666 666677777888888888777667777778888888888888888887765432 223
Q ss_pred CcchHHHHHHHHhccCCcHHH---HHHHHHHHHhCCCCC--cchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHH
Q 046956 135 DKYTFPLVIKACSHVLSVREG---TAIHAAVIRWGVDED--VFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTA 207 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 207 (574)
+...|.-+....++.-+.-.. ..+.+.++.. -+| -..|.+|.+-|.+.|++++|.++|++... -++.-++.
T Consensus 209 n~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ 286 (835)
T KOG2047|consen 209 NHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQ 286 (835)
T ss_pred hhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHH
Confidence 445555555544443332222 2233332221 123 24688889999999999999999987654 22222333
Q ss_pred HHHHHHhc----------------C------ChHHHHHHHhhcCCCC---------------cchHHHHHHHHHccCChH
Q 046956 208 MIVGYASV----------------G------DLVEAKTVFDLMPERS---------------NVSWNALIGGLVKIGDLR 250 (574)
Q Consensus 208 li~~~~~~----------------g------~~~~a~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~ 250 (574)
+-+.|+.- | +++-.+..|+.+...- +..|..-+. ...|+..
T Consensus 287 ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~ 364 (835)
T KOG2047|consen 287 IFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAA 364 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChH
Confidence 33333321 1 1222333344333221 112221111 1123333
Q ss_pred HHHHHHhc----C---CC--CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC-------HhHHHHHHHHHHhCCCchHH
Q 046956 251 SARQLFDE----M---PE--RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD-------VVAWSALISGYAQNGQPDEA 314 (574)
Q Consensus 251 ~a~~~~~~----~---~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A 314 (574)
+-...+.+ + +. .-...|..+...|-..|+++.|..+|++..+-+ ..+|......-.+..+++.|
T Consensus 365 ~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 365 EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333321 1 01 123478889999999999999999999987632 24566666777788899999
Q ss_pred HHHHHHHHHCCCC----------C-------CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 315 VKIFSDMCSKNVQ----------P-------DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 315 ~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
+++.+......-. | +...|...+..-...|-++....+++.+.+..+..+. +.-..+..+.
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLE 522 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLE 522 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHH
Confidence 9998887542111 1 2234555555556678888889999999987766554 3444555566
Q ss_pred hcCCHHHHHHHHhhCCC----CCh-hHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCc
Q 046956 378 KCGNMDRAAELFETMPN----RDV-VSYCSMIKGLSIH---GHGRQAVSLFDRMLSEGLTPDEVA--FTIVLTACSHVGL 447 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~ 447 (574)
...-++++.++|++-.. |++ ..|+..+.-+.+. ...+.|..+|++.++ |++|...- |......-.+.|.
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 67778999999988663 555 4788877666542 368999999999998 67777652 3233333445699
Q ss_pred HHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH---HHHHhcCCHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALL---GACKLYSDIELGEL 521 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~~~~~~~a~~ 521 (574)
...|+.+++++.. ++++. ...|+..|.-....=-......+++++ ..-|+...-...+ ..-.+.|.+++|..
T Consensus 602 ar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 602 ARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 9999999999887 66655 366777665433322223334444444 2335544433333 45578899999999
Q ss_pred HHHHHHhh-CCC-CchhHHHHHHHHHhcCCc
Q 046956 522 VANRLFEL-EPQ-NAGSYVLLSNIYATADRW 550 (574)
Q Consensus 522 ~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~ 550 (574)
+|...-++ +|. ++..|...-..-.+.|+-
T Consensus 680 Iya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 680 IYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 99998887 454 456777777777888883
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.6e-14 Score=132.84 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=198.5
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC-CCChhhHHHHHHHHhHhcCCHHH-H
Q 046956 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNMDR-A 385 (574)
Q Consensus 308 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~-A 385 (574)
.-+..+|+..|....+. +.-+......+..+|...++++++..+|+.+.+..+ .....++|...+.-+-+.-.+.. |
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34578999999995443 444567778889999999999999999999987543 23333367666655443222221 1
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC
Q 046956 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 464 (574)
.++.+ ..+..+.+|-++..+|.-+++++.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.++.
T Consensus 411 q~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 411 QDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 22222 2234678999999999999999999999999998 677 456999999999999999999999999874
Q ss_pred CCcHHHHH---HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 465 VPSPEHYA---CMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 465 ~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
.++.+|+ -++..|.++++++.|.-.|+++ .+.|. ......++..+.+.|+.++|++++++++.++|.|+-.-+.
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 3445555 4678899999999999999998 77885 4556667788999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 540 LSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+.++...+++++|...++++++--
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999999997644
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.9e-12 Score=125.70 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=171.6
Q ss_pred cCChHHHHHHHhhCCCC--C-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCcchHHH
Q 046956 277 VGDMTSARSLFEAAPDR--D-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV--SLMSACSQVGNLDLSNW 351 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 351 (574)
.|++++|++.+....+. + ...|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677776666654432 1 222322334446677777777777777653 44433222 22445666777777777
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC---Chh--------HHHHHHHHHHHcCChHHHHHHH
Q 046956 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR---DVV--------SYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~a~~~~ 420 (574)
.++.+.+..+.... +...+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P~~~~--al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPRHPE--VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCCCHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777665543332 5667777777777777777777666531 111 2333333333444555555666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 421 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
+.+.+. .+.++.....+...+...|+.++|...+++..+. +|+.... ++.+....|+.+++.+.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 655332 2445667777788888888888888888777752 4444222 233334557888888888776 44565
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 500 AS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 500 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.. ....+...|...+++++|.+.|+++++..|++. .+..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44 455666888888888888888888888888743 456788888888888888888876654
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.5e-11 Score=111.91 Aligned_cols=262 Identities=11% Similarity=-0.012 Sum_probs=207.3
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
++........-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+-..+++.-+.... .|.+++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~--sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL--SWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc--chhhHH
Confidence 4555556666778889999999999998876 3555556666666788888887777777777776555444 578888
Q ss_pred HHhHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHH
Q 046956 374 DMNAKCGNMDRAAELFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVE 449 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~ 449 (574)
-.|.-.|+..+|.+.|.+...- -...|-.+..+|+..|..|+|+..|...-+. -|.. ..+..+..-|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHH
Confidence 8888889999999999887643 3358999999999999999999999887773 3332 24445566688899999
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP--------VEP-HASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
.|.++|.++.. -.+-|+..++.+.-.....+.+.+|..+|+... ..+ -.++++.+..+|++.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999885 445567888888888888899999999987751 111 3456888889999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+++++.+.|.++.++..++-+|...|+.+.|...|.+..-
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987754
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.9e-11 Score=108.62 Aligned_cols=404 Identities=10% Similarity=0.025 Sum_probs=251.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-cchHHHHHHHH
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD-KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLY 181 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 181 (574)
+-....-|.++|++++|+..|.+.+.. .|+ ...|.-..-+|...|+++++.+.-...++.+ |+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334455677888888888888888775 566 5566666666778888888888777776643 33 23444555666
Q ss_pred HcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh---------cCC--CCcchHHHHHHHHHccCChH
Q 046956 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL---------MPE--RSNVSWNALIGGLVKIGDLR 250 (574)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~--~~~~~~~~l~~~~~~~~~~~ 250 (574)
-..|++++|+.= +|-.++..++....-.--+.++++. +.+ +....-...+..|...=..+
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 667777766431 1112222222111111111111111 110 11111111222222110000
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH----HHh-cCChHHHHHHHhhCC-------CCC---------HhHHHHHHHHHHhCC
Q 046956 251 SARQLFDEMPERNVVSYTTMIDG----YAK-VGDMTSARSLFEAAP-------DRD---------VVAWSALISGYAQNG 309 (574)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~l~~~----~~~-~g~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~~ 309 (574)
--. .+..+.......+... +.. ...+..|...+.+-. ..+ ..+.......+.-.|
T Consensus 265 ~~~----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 265 PKP----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred ccc----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 000 0000111112222211 111 113444444433211 111 223333334455678
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
+...|...|+..++....++. .|..+...|....+.++..+.|....+.++..+. +|..-++++.-.+++++|..-|
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543333 3777778899999999999999999987765554 7888999999999999999999
Q ss_pred hhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 390 ETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 390 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
++...- ++..|-.+..+.-+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+.+++. .|
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~ 493 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EP 493 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cc
Confidence 998853 4456666666666888999999999999885 4444569999999999999999999999999853 33
Q ss_pred c---------HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 467 S---------PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 467 ~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
. +.+.-.++-.- -.+++..|.++++++ ...|. ...+..+...-.+.|+.++|+++|++...+...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 22222222222 348999999999988 66775 457788888999999999999999998877433
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.3e-11 Score=119.84 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=176.1
Q ss_pred cCChHHHHHHHhhcCCCC--cc-hHHHHHHHHHccCChHHHHHHHhcCCC--CchhHHH--HHHHHHHhcCChHHHHHHH
Q 046956 215 VGDLVEAKTVFDLMPERS--NV-SWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYT--TMIDGYAKVGDMTSARSLF 287 (574)
Q Consensus 215 ~g~~~~a~~~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~ 287 (574)
.|+++.|.+.+....+.. +. .|.....+..+.|+++.|...+..+.+ |+..... .....+...|++++|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 577777776666544321 11 222223333455555555555553322 2222111 2234455555555555555
Q ss_pred hhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Q 046956 288 EAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364 (574)
Q Consensus 288 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (574)
+++.+ .+......+...|.+.|++++|.+++..+.+.+..++ .....+-.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~-------------------------- 229 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQ-------------------------- 229 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHH--------------------------
Confidence 54433 2344444555555555555555555555554432211 11110000
Q ss_pred hhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 365 RAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
..+..++.......+.+...++++.+. ..++.....+...+...|+.++|...+++..+. .|+.... ++.+
T Consensus 230 --~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~ 303 (398)
T PRK10747 230 --QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP 303 (398)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh
Confidence 022222333334445566677777765 357778888999999999999999999998883 5555322 2333
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
....++.+++.+..+...+ ..+-|+..+..+...+.+.|++++|.+.|+.+ ...|+...+..+...+.+.|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4456999999999999987 55667788889999999999999999999988 77899999888999999999999999
Q ss_pred HHHHHHHhh
Q 046956 521 LVANRLFEL 529 (574)
Q Consensus 521 ~~~~~~~~~ 529 (574)
+++++.+.+
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 999999876
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.8e-12 Score=108.76 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=67.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
...+.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++.
T Consensus 192 ~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 192 ASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 334444455555544442 23222 2223333444455555555555544443 2222234444445555555555555
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--hcCCchHHHHHHHHHHhCC
Q 046956 488 YELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA--TADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 488 ~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~ 564 (574)
...+.++ ...+....-..+........-.+.|...+.+-+..+|.-...+..+.--.. .-|.+.+-...++.|....
T Consensus 269 ~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 269 LNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 5544444 222333323333322223333444555555555555553322222221111 2334555556666666555
Q ss_pred CccCC
Q 046956 565 LRKIP 569 (574)
Q Consensus 565 ~~~~~ 569 (574)
++..|
T Consensus 349 l~~~~ 353 (389)
T COG2956 349 LRRKP 353 (389)
T ss_pred HhhcC
Confidence 55444
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.5e-11 Score=117.57 Aligned_cols=222 Identities=10% Similarity=0.036 Sum_probs=98.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh------HHHHHHHH
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH------VIAALVDM 375 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~ 375 (574)
...+...|++++|...++.+.+.. +-+......+...+...|+++.+...+..+.+.+...+... .+..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554442 11333444444444555555555555555444433222110 00000100
Q ss_pred hHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHH-HHHHHhccCcHH
Q 046956 376 NAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA--FTI-VLTACSHVGLVE 449 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~-l~~~~~~~g~~~ 449 (574)
-......+...+.++...+ .+...+..+...+...|++++|...+++..+. .||... +.. ..-.....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 0111122233333333331 25555556666666666666666666666653 233321 011 111122234555
Q ss_pred HHHHHHHHhHhhcCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSP--EHYACMVDLLGRTGHLKSAYELLNS--M-PVEPHASAWGALLGACKLYSDIELGELVAN 524 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 524 (574)
.+.+.+++..+ ..+-|+ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++++
T Consensus 317 ~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 317 KLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555554 222222 3444555555555555555555552 2 334555555555555555555555555555
Q ss_pred HHHh
Q 046956 525 RLFE 528 (574)
Q Consensus 525 ~~~~ 528 (574)
+++.
T Consensus 395 ~~l~ 398 (409)
T TIGR00540 395 DSLG 398 (409)
T ss_pred HHHH
Confidence 5443
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.5e-14 Score=132.64 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=105.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC----CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 269 TMIDGYAKVGDMTSARSLFEAA-PD----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343 (574)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 343 (574)
.+...+.+.|++++|++++++. .. .|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466677778888888887432 22 24556666666677778888888888888765422 44455555555 577
Q ss_pred CCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHH
Q 046956 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-----NRDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
+++++|..+.....+.... .. .+...+..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~--~~-~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD--PR-YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccccc--cc-hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788887777665544322 22 56667777888888888888887743 3567788888899999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046956 419 LFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV 496 (574)
Q Consensus 419 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (574)
.+++.++ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..++.+|...|+.++|...+++. ..
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999998 4565 557888888999999999999999888874 3666778888999999999999999999988 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 497 EP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 497 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.| |+.....+..++...|+.++|.++.+++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 55 5666677779999999999999998887653
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.4e-11 Score=118.68 Aligned_cols=282 Identities=8% Similarity=0.004 Sum_probs=204.3
Q ss_pred HHhcCChHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCcch
Q 046956 274 YAKVGDMTSARSLFEAAPD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE--FILVSLMSACSQVGNLDL 348 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~ 348 (574)
....|+++.|.+.+.+..+ ++ ...+-....+..+.|+++.|.+.+.+..+.. |+. ..-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3467999999999887665 22 3445555677888999999999999987653 443 333445777888999999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHH----HHHHHHHHcCChHHHHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYC----SMIKGLSIHGHGRQAVSLFD 421 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~~~~~~a~~~~~ 421 (574)
|...++.+.+..+... .+...+...+...|++++|.+.+..+.+ .+...+. .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~P~~~--~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHK--EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998875544 3788999999999999999999998874 2333232 11112233333344445555
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 422 RMLSEGL---TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 422 ~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
++.+... +.+...+..+...+...|+.++|.+.+++..+. .+.+... .....-.....++.+.+.+.+++. +
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 5555321 136778888899999999999999999999974 2333211 111222233457888898888877 4
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 496 VEPHA---SAWGALLGACKLYSDIELGELVAN--RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 496 ~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..|+. ....++...+.+.|++++|.+.|+ .+++..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45544 456688899999999999999999 57777887544 67999999999999999999998643
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.5e-10 Score=108.46 Aligned_cols=280 Identities=10% Similarity=0.052 Sum_probs=223.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.+......-.+-+...+++.+..++++.+.+.| ...+-.-|.++...|+..+-..+=.++.+. .+-...+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 4556666677778888999999999999887643 455666677889999999888888888876 455678899999
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGR 414 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 414 (574)
--|...|+..+|++++.+....+....+ .|-.++..|+-.|.-++|+..+....+ .....+--+..-|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgp--aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGP--AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccH--HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 8888999999999999999887776666 588899999999999999988876553 22222333455677889999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc-CCC----CcHHHHHHHHHHHhhcCCHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY-AIV----PSPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
-|.+.|.+... +.|+ +...+-+.-.....+.+.+|..+|+.....- .+. ....+++.|+.+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999887 5565 5577777777778899999999999887310 111 13456889999999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 489 ELLNSM-P-VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 489 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
..+++. . ...+..++.++.-.|...|+++.|+..|.+++-++|++..+-..|..+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999987 3 34477888888899999999999999999999999999887777765543
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=5.2e-11 Score=103.73 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=102.9
Q ss_pred CChHHHHHHHhhcCCCCcchH---HHHHHHHHccCChHHHHHHHhcCCC-Cch------hHHHHHHHHHHhcCChHHHHH
Q 046956 216 GDLVEAKTVFDLMPERSNVSW---NALIGGLVKIGDLRSARQLFDEMPE-RNV------VSYTTMIDGYAKVGDMTSARS 285 (574)
Q Consensus 216 g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A~~ 285 (574)
++.++|.++|-+|.+.|+.|+ .+|.+.|.+.|..|.|+.+++.+.+ ||. .....|..-|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 445555555555544433332 2344445555555555555553322 221 233445666777777777777
Q ss_pred HHhhCCCCC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCcchHHHHHHHHHH
Q 046956 286 LFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSLMSACSQVGNLDLSNWVDSYLSR 358 (574)
Q Consensus 286 ~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 358 (574)
+|..+.+.+ ..+...|+..|-...+|++|++.-+++.+.+-.+.. ..|..+...+....+.+.|...+.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 777776632 345666777777888888888877777766544332 2233333333344444444444444444
Q ss_pred hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV----VSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
.+.+.... --.+++.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++....+.++.+
T Consensus 209 a~~~cvRA--si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 209 ADKKCVRA--SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hCccceeh--hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43333221 22234444444444444444444443222 1233333444444444444444444443
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=8.5e-10 Score=108.71 Aligned_cols=475 Identities=12% Similarity=0.052 Sum_probs=295.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV----NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 129 (574)
..++..+...|+.|+..+|..++ .-|+..|+.+.|- +|.-|. .-+...++.++.+..+.|+.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLi-arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLI-ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHH-HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 35788888999999999999999 8899999999998 887775 235567999999999999887764
Q ss_pred CCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHH
Q 046956 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTA 207 (574)
Q Consensus 130 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 207 (574)
.|...||..|+.+|...||+..-..+-+.+ ..+...+...|--..-..++..+.- .....-..
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 678899999999999999987622222212 2233344455554444555544321 11112233
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcc-hHHHHHHHHHcc-CChHHHHHHHhcCCC-CchhHHHHHHHHHHhcCChHHHH
Q 046956 208 MIVGYASVGDLVEAKTVFDLMPERSNV-SWNALIGGLVKI-GDLRSARQLFDEMPE-RNVVSYTTMIDGYAKVGDMTSAR 284 (574)
Q Consensus 208 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 284 (574)
.+.-..-.|.++.+++++..++..... ++..+++-+... ..+++-........+ +++.++.++++.-...|+++.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 445555667788888888777643111 111124444332 334555554444434 89999999999999999999999
Q ss_pred HHHhhCCCCC----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc---------h---
Q 046956 285 SLFEAAPDRD----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD---------L--- 348 (574)
Q Consensus 285 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---------~--- 348 (574)
.++.+|.+.. ..-+-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|... .
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 9999998753 3334444444 7888899999999999999999999988777666533221 0
Q ss_pred ------------HHHHHHH------------HHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------CCh
Q 046956 349 ------------SNWVDSY------------LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------RDV 397 (574)
Q Consensus 349 ------------a~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~ 397 (574)
+.+.++. ..=.|...... ++...... ...|+-++.+.+...+.. .++
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~a-iws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEA-IWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchH-HHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence 1111100 00112233332 33333222 225666666666666553 234
Q ss_pred hHHHHHHHHHHHcCC----------------------hHHHHHHHHHHHHCCCCCCHH----------------------
Q 046956 398 VSYCSMIKGLSIHGH----------------------GRQAVSLFDRMLSEGLTPDEV---------------------- 433 (574)
Q Consensus 398 ~~~~~li~~~~~~~~----------------------~~~a~~~~~~m~~~g~~p~~~---------------------- 433 (574)
..|..++.-|.+.-+ ..+..++... ..||..
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhh
Confidence 455554444433211 1111111111 122221
Q ss_pred ------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHH
Q 046956 434 ------AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-----VEPHASA 502 (574)
Q Consensus 434 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~ 502 (574)
.-+.++..|...-+..+++..-++.... .+ ...|..|++.+......+.|..+.++.. ...+...
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 1122233333333334444333333321 22 2678889999999999999999988873 2334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 503 WGALLGACKLYSDIELGELVANRLFEL---EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
+..+...+.+.+....+..++++..+. .|........+.......|+.+.-.++++-+..-|+..
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 666777788888888888888888775 34445566666666788899999889888888777654
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=1.7e-11 Score=110.95 Aligned_cols=195 Identities=14% Similarity=0.062 Sum_probs=163.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 677788888999999999999887663 345678888899999999999999999998853 3345677888888999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|.+.++++......+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999874222334567778889999999999999999887 3344 456777788899999999999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998988999999999999999999999998887653
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.1e-09 Score=100.39 Aligned_cols=437 Identities=15% Similarity=0.090 Sum_probs=247.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCCcchHHHHHHHH--HcC
Q 046956 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV-DEDVFVGTSLIDLY--GKR 184 (574)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~--~~~ 184 (574)
+..+..+|++++|.....++...+ +-+...+..-+-+..+.+.+++|..+.+. .+. ..+.+.+ +=.+| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHHHHHHHc
Confidence 344556667777777777776654 22344455555556666677766643332 111 1111110 12233 356
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHc-cCChHHHHHHHhcCC---
Q 046956 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-IGDLRSARQLFDEMP--- 260 (574)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~--- 260 (574)
+..++|...++.....|..+...-...+.+.|++++|+.+|+.+.+.+...+...+++-+. .+..-.+ ++.+...
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~~~q~v~~v~ 171 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-QLLQSVPEVP 171 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-HHHHhccCCC
Confidence 7777777777755444555666666777788888888888888866544444333222111 1111111 1222221
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhC--------CCCC-----H-----hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAA--------PDRD-----V-----VAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
+.+-..+......+...|++.+|+++++.. .+.| + ...-.|...+...|+.++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 122233344455677889999999988766 2211 1 123446667788999999999999998
Q ss_pred HCCCCCCHHH---HHHHHHHHhccCCcch--HHHHHHHHHHhC---------CCCChhhHHHHHHHHhHhcCCHHHHHHH
Q 046956 323 SKNVQPDEFI---LVSLMSACSQVGNLDL--SNWVDSYLSRSH---------MDLSRAHVIAALVDMNAKCGNMDRAAEL 388 (574)
Q Consensus 323 ~~~~~p~~~~---~~~ll~~~~~~~~~~~--a~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (574)
+.+ .+|... +..=+.+.....++-. ....++...... ...-.. ++...+....-.+..+.+.++
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~-i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA-IYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence 875 344322 2222223322222221 111111111000 000011 333333333344666777777
Q ss_pred HhhCCCCC-hhHHHHHHHHHH-H-cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH-------
Q 046956 389 FETMPNRD-VVSYCSMIKGLS-I-HGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWRFFE------- 456 (574)
Q Consensus 389 ~~~~~~~~-~~~~~~li~~~~-~-~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~------- 456 (574)
-....... ...+.+++.... . ...+.++.+++....+. .|.. ......+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 77766422 334444443332 2 23477788888777664 3433 355566667888999999999998
Q ss_pred -HhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 046956 457 -AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-----PVEPHASAWG----ALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 457 -~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
...+. +. .+.+-.++...+.+.++-+.|..++.+. ...+...... .....-.+.|+-++|...++++
T Consensus 408 ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 44432 33 3455666778888888777777776655 1122223333 3334446779999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
++.+|++..+...++.+|.+. +.+.|..+-+.
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999988766 45666655443
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.7e-09 Score=95.49 Aligned_cols=428 Identities=11% Similarity=0.060 Sum_probs=244.2
Q ss_pred cCCChHHHHHHhhccCCC------ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHH
Q 046956 82 LATPLSYSTAVFNRIVNP------NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 82 ~~~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 155 (574)
...++..|+.+++--..- +...| +...+.+-|++++|+..|..+.+.. .++...+.-|.-...-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 456777787777544321 22222 3445567788888888887777643 44555555555555566777777
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV- 234 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 234 (574)
..+-... +-++.--..|+....+.|+-++-..+-+.+.+.. .---+|.......-.+.+|+++|.+....++.
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 7665432 2223333445556666677666666555554322 22234445555556678888888887654432
Q ss_pred -hHHH-HHHHHHccCChHHHHHHHh----cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhC
Q 046956 235 -SWNA-LIGGLVKIGDLRSARQLFD----EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308 (574)
Q Consensus 235 -~~~~-l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 308 (574)
..|. +.-+|.+..-++-+.+++. .. +.++..-|.......+.-+-..|.+-...+-+.-... -..+.-.++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-YPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-chhHHHHHHc
Confidence 3332 3334555655555555554 22 2333333333333332211111221111111110000 1122223332
Q ss_pred -----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC---
Q 046956 309 -----GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG--- 380 (574)
Q Consensus 309 -----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 380 (574)
.+-+.|++++-.+.+. .|. .-..++..|.+.+++.+|..+.+.+ +|.++.-|-.-+-.++..|
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl-----~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDL-----DPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhc-----CCCChHHHHHHHHHHHHhhhhc
Confidence 3456777777666543 333 2234555677888888887766544 3333312222222233333
Q ss_pred ----CHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 381 ----NMDRAAELFETMPN-----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 381 ----~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
.+.-|...|+-.-. .++.--..+...+.-..++++.+..++....- +..|...-..+..+.+..|++.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHH
Confidence 34456666665542 22334455666667777888888888887765 333444444577888889999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhh
Q 046956 452 WRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL-GACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.++|-.+... .+ .|..+|. .|.++|.+.|.++-|++++-++....+..++..++ .-|.+.+++--|-+.|+.+..+
T Consensus 413 Eelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 413 EELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9999877642 22 3445554 57789999999999999998886444555666665 7788999999899999988888
Q ss_pred CCC
Q 046956 530 EPQ 532 (574)
Q Consensus 530 ~p~ 532 (574)
+|.
T Consensus 491 DP~ 493 (557)
T KOG3785|consen 491 DPT 493 (557)
T ss_pred CCC
Confidence 876
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=1.1e-09 Score=98.70 Aligned_cols=280 Identities=16% Similarity=0.131 Sum_probs=166.2
Q ss_pred cCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHH
Q 046956 215 VGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLF 287 (574)
Q Consensus 215 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (574)
.|++..|+++..+-.+. ....|..-+++.-..|+.+.+-..+.+..+ ++..+.-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777776664432 222344444555556666666666664322 22334444455555666666665555
Q ss_pred hhCC---CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Q 046956 288 EAAP---DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364 (574)
Q Consensus 288 ~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (574)
+++. ..+.........+|.+.|++.....++..+.+.|.-.+...-. + .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------H
Confidence 4333 2445555566666666666666666666666555433321110 0 0
Q ss_pred hhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 365 RAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
. .++..+++-....+..+.-...++... +.++..-..++.-+.+.|+.++|.++.++..+++..|+. .. .-.
T Consensus 229 ~-~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~ 303 (400)
T COG3071 229 Q-QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIP 303 (400)
T ss_pred H-HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHh
Confidence 0 033444444444444444445555555 345666666777777788888888888887777666651 11 223
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
+.+.++...-++..++..+. .+.++..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|..+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 55667777777777776663 3334467777788888888888888888766 66777777877778888888888888
Q ss_pred HHHHHHHhh
Q 046956 521 LVANRLFEL 529 (574)
Q Consensus 521 ~~~~~~~~~ 529 (574)
+..++++..
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 877777654
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=1.3e-09 Score=106.12 Aligned_cols=397 Identities=12% Similarity=0.045 Sum_probs=255.5
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCC----
Q 046956 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS---- 232 (574)
Q Consensus 160 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---- 232 (574)
.++....+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.+.+....+.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 3334444667888888888888999999999999988764 455678888889999999999999988765432
Q ss_pred -cchHHHHHHHHH-ccCChHHHHHHHhcCC--------CCchhHHHHHHHHHHhcC-----------ChHHHHHHHhhCC
Q 046956 233 -NVSWNALIGGLV-KIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYAKVG-----------DMTSARSLFEAAP 291 (574)
Q Consensus 233 -~~~~~~l~~~~~-~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~ 291 (574)
...+...-..|. +.+.++++...-.+.. .-.+..|..+.-+|...- ...++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 223333333333 3444544444333110 123445555555554321 2345566666664
Q ss_pred C---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHh-CCCCChhh
Q 046956 292 D---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS-HMDLSRAH 367 (574)
Q Consensus 292 ~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 367 (574)
+ .|..+...+.--|+..++.+.|++..++..+.+-.-+...|..+...+...+++.+|+.+.+..... +....
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--- 548 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--- 548 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh---
Confidence 3 2333333344456777889999999999888866778888888888888888998888888776543 22111
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-------------------------------CC-hhHHHHHHHHHHHcCChHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-------------------------------RD-VVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~~~~~~ 415 (574)
....-+..-...++.++|......+.. .+ +.++..+..-....+ +.
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~ 626 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KS 626 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hh
Confidence 011111112223444444433222210 01 112222221111111 00
Q ss_pred HHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 416 AVSLFDRMLSEGLTPDE--------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
+..-.. +....+.|.. ..|......+.+.+..++|...+.++.. -.+-....|......+...|++++|
T Consensus 627 ~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 627 AGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 000000 1111122222 2344556678888999999999988886 4455677888888899999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 488 YELLNSM-PVEPH-ASAWGALLGACKLYSDIELGEL--VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 488 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
.+.|... -.+|+ +....++...+...|+...|.. ++..+++.+|.++.+|..|+.++.+.|+.++|.+.|+...+-
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999877 56775 5677888899999998888877 999999999999999999999999999999999999987754
Q ss_pred C
Q 046956 564 G 564 (574)
Q Consensus 564 ~ 564 (574)
.
T Consensus 784 e 784 (799)
T KOG4162|consen 784 E 784 (799)
T ss_pred c
Confidence 4
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=4e-10 Score=101.48 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=200.4
Q ss_pred cCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHH
Q 046956 277 VGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 353 (574)
.|++.+|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+..-.++..............|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5778888777766443 2344555555666777888888888888776533455555666666677788888888777
Q ss_pred HHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC-----------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 046956 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD-----------VVSYCSMIKGLSIHGHGRQAVSLFDR 422 (574)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~ 422 (574)
..+.+.+..... +.....++|.+.|++.....++.++.+.. ..+|+.+++-....+..+.-...|++
T Consensus 177 ~~ll~~~pr~~~--vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTPRHPE--VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCcCChH--HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777776655554 67778888888888888888888777421 23677777766666666666667776
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 046956 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HA 500 (574)
Q Consensus 423 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 500 (574)
.-.+ .+-++..-..++.-+.+.|+.++|.++.++..+. +..|+.. .+ -...+-++.+.-++..++. ...| ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 4556666677788889999999999999999886 6666621 11 2234556666555555544 2222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..+.++...|.+++.+.+|...++.+++..|+ ...|..++.++.+.|+..+|.+.+++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 67788889999999999999999999998887 7889999999999999999999998876
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=2.6e-08 Score=95.11 Aligned_cols=484 Identities=12% Similarity=0.151 Sum_probs=284.3
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHhhccC-----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 046956 69 HSLVAHFISLCHSLATPLSYSTAVFNRIV-----NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143 (574)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 143 (574)
+.++-.-+ +..-+.|++...+..|++.. ..-...|...+.-....|-++-++.+|++.++- ++..-.-.+
T Consensus 102 pRIwl~Yl-q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYL-QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHH-HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 34555555 66667888888888887753 223346888888888888899999999998875 233355667
Q ss_pred HHHhccCCcHHHHHHHHHHHHhC------CCCCcchHHHHHHHHHcCCChH---HHHHHHccCCC--CCh--hhHHHHHH
Q 046956 144 KACSHVLSVREGTAIHAAVIRWG------VDEDVFVGTSLIDLYGKRKEIS---CARKVFDEMPE--RNV--VSWTAMIV 210 (574)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~~--~~~~~li~ 210 (574)
..++..+++++|.+.+...+... -+.+...|.-+.+..++..+.- ....++..+.. +|. ..|.+|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 77788899999998888775331 1445556777776666554322 33445555544 343 47999999
Q ss_pred HHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHccCC----------------------hHHHHHHHhcCCC-----
Q 046956 211 GYASVGDLVEAKTVFDLMPER--SNVSWNALIGGLVKIGD----------------------LRSARQLFDEMPE----- 261 (574)
Q Consensus 211 ~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~----- 261 (574)
-|.+.|.+++|.++|++.... ...-|..+.++|+.-.. ++-...-|+.+..
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 999999999999999987653 23334444444432111 1111112221100
Q ss_pred ----------CchhHHHHHHHHHHhcCChHHHHHHHhhCCC---C------CHhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 262 ----------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---R------DVVAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 262 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
.++..|..-+.. ..|+..+-...|.+..+ | -...|..+...|-..|+.+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 112222222221 23444444444443322 1 22457777777777888888888887776
Q ss_pred HCCCCCC---HHHHHHHHHHHhccCCcchHHHHHHHHHHhCC----------CCChh------hHHHHHHHHhHhcCCHH
Q 046956 323 SKNVQPD---EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM----------DLSRA------HVIAALVDMNAKCGNMD 383 (574)
Q Consensus 323 ~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~------~~~~~l~~~~~~~g~~~ 383 (574)
+-..+-- ..+|..-...=.+..+++.|..+.+.+..... .|... .++...++.-...|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5432211 22333333333344555666665555442111 11111 13344455555566666
Q ss_pred HHHHHHhhCCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCcHHHHHHHHH
Q 046956 384 RAAELFETMPNRDVVS---YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSH---VGLVEDGWRFFE 456 (574)
Q Consensus 384 ~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~---~g~~~~a~~~~~ 456 (574)
....+|+++.+--+.| .-....-+-.+.-++++.+.|++-+..=-.|+.. .|+..+.-+.+ ....+.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6666776665321111 1111122234455777887777765543345553 66666655433 346889999999
Q ss_pred HhHhhcCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHH-HHHHhcCCHHHHHHHHHHHHhh
Q 046956 457 AMQNVYAIVPSP--EHYACMVDLLGRTGHLKSAYELLNSMP--VEPH--ASAWGALL-GACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 457 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
++.+ +.+|.. ..|......-.+-|....|+++++++. .++. ...|+..+ .+...-| ......+|+++++.
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIES 651 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHh
Confidence 9998 777653 334444444456788899999999983 3332 23555555 2322233 34567899999998
Q ss_pred CCCCch--hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 530 EPQNAG--SYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 530 ~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
-|++-. .....+++-.+.|..+.|+.++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 887543 445567788899999999999876554
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=6.9e-10 Score=109.33 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=164.6
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCC
Q 046956 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201 (574)
Q Consensus 122 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 201 (574)
.++-.+...|+.||..||..+|..|+..|+.+.|- +|..|.....+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556667778888888888888888888877777 7777777776777777777777777777766654 567
Q ss_pred hhhHHHHHHHHHhcCChHH---HHHHHhhcCC---------------------C-CcchHHHHHHHHHccCChHHHHHHH
Q 046956 202 VVSWTAMIVGYASVGDLVE---AKTVFDLMPE---------------------R-SNVSWNALIGGLVKIGDLRSARQLF 256 (574)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~---a~~~~~~~~~---------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (574)
..+|..|..+|...|++.. +.+.+..+.. | ....-..++....-.|-++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777644 2221111111 0 0011122333344455666667766
Q ss_pred hcCCC---CchhHHHHHHHHHHh-cCChHHHHHHHhhCCC-CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 046956 257 DEMPE---RNVVSYTTMIDGYAK-VGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331 (574)
Q Consensus 257 ~~~~~---~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 331 (574)
..+.. ..+... +++-... ...+++-......... ++..+|..++.+-..+|+.+.|..++.+|.+.|++.+.+
T Consensus 163 ~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred hhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 54421 111111 1222222 2334555555555554 789999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
-|..++-+ .++...++.+..-|.+.|+.|+.. ++...+..+.+.|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se-T~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE-TQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcc-hhHHHHHhhhcchh
Confidence 88888766 788888888999999999988877 66555555544443
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=1.2e-10 Score=112.44 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=137.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CC
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-------RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLS-----EGL-TP 430 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p 430 (574)
..+.++..|...+++++|..+|+++.. ++ ..+++.|..+|.+.|++++|..++++..+ .|. .|
T Consensus 243 ~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 243 MLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 334466666777777777777666541 11 23566667777777777777776666543 122 22
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcC--CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC
Q 046956 431 DEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYA--IVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-------PV 496 (574)
Q Consensus 431 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 496 (574)
... .++.+...|...+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++ ..
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 222 566677778889999999988887765432 2222 367889999999999999999999876 11
Q ss_pred --CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 497 --EPH-ASAWGALLGACKLYSDIELGELVANRLFEL----EPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 497 --~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.+. ...++.+...|.+.+++++|.++|.+...+ .|+ ....|..|+.+|.++|++++|.++.+...
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 446677788899999999999999887764 444 45578899999999999999999988776
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=5e-11 Score=103.87 Aligned_cols=226 Identities=11% Similarity=0.026 Sum_probs=164.9
Q ss_pred HHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHc
Q 046956 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RDVV-SYCSMIKGLSIH 410 (574)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~ 410 (574)
..+..+|.+.|-+.+|++.++...++...++ +|..|...|.+..+...|..+|.+-.+ |..+ ....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d---TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD---TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh---HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 3455555666666666666655555443333 566667777777777777777776653 3333 334455666677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
++.++|.++|+...+.. +.+......+...|.-.++++-|+.+|+++.+. |+ .+++.|+.+.-+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888877742 334456666777777788888888888888874 55 4667788888888888888888887
Q ss_pred HHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 491 LNSM---PVEP--HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 491 ~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|+++ -.+| ....|..+.......||+..|.+.|+-++..+|++..++++|+.+-.+.|+.++|+.+++......+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 7776 1223 3567888888888899999999999999999999999999999999999999999999988876554
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=7.1e-10 Score=112.65 Aligned_cols=241 Identities=14% Similarity=0.065 Sum_probs=174.4
Q ss_pred CchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc
Q 046956 310 QPDEAVKIFSDMCSKNVQPD-EFILVSLMSACS---------QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (574)
.+++|...|++..+. .|+ ...+..+..++. ..++.++|...++++.+.++... ..+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHc
Confidence 357888888888765 443 344444443332 23446788888888887665433 3677888899999
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 046956 380 GNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 380 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998773 4 4567888899999999999999999999984 56543 3344455566789999999999
Q ss_pred HHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhh---
Q 046956 456 EAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAW-GALLGACKLYSDIELGELVANRLFEL--- 529 (574)
Q Consensus 456 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~--- 529 (574)
+++... .+| ++..+..+..++...|++++|...++++ +..|+.... +.+...+...| +.|...++++++.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998763 334 4566778889999999999999999987 445554444 44445666666 4788877777764
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.|.++.. +..+|.-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4554444 66678888887777766 8887654
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1.4e-10 Score=96.58 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
...+.-.|...|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+++.+ --+-+-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 444556677777777777777777773 45543 777777777777777777777777764 2333456677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHH
Q 046956 479 GRTGHLKSAYELLNSMPVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
|..|++++|...|+++-..|. ..+|.++..+..+.|+.+.|...++++++.+|+.+.....++......|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777777633332 3456666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCC
Q 046956 555 LVRSKMKERG 564 (574)
Q Consensus 555 ~~~~~~~~~~ 564 (574)
.++++....+
T Consensus 194 ~~~~~~~~~~ 203 (250)
T COG3063 194 LYLERYQQRG 203 (250)
T ss_pred HHHHHHHhcc
Confidence 7777665544
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-08 Score=90.79 Aligned_cols=276 Identities=11% Similarity=0.029 Sum_probs=200.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV---VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.|+.....+...+...|+.++|+..|++...-|+ .........+.+.|+.++...+...+.... .-+...|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56677777788888888888888888876554332 223333445667788888777777765432 12233333333
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChH
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGR 414 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~ 414 (574)
.......+++.|..+-++.++.+..... .+-.-+.++...|+.++|.-.|.... . -+..+|..++.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~--alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHE--ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccch--HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 3444566777777777777766554443 45566777888899999999998766 3 46789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVL-TACS-HVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
+|..+-+..... +..+..+...+. ..|. ...--++|..++++..+ ..|+ ....+.+...+...|..+++++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999888876653 344555665553 3332 33445788888888774 4555 466777888999999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 492 NSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 492 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
++. ...||....+.+...+...+.+++|+..|..+++++|++.....-|-.+
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 887 6778999999999999999999999999999999999988777666443
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=2.4e-09 Score=94.65 Aligned_cols=416 Identities=12% Similarity=0.121 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh
Q 046956 71 LVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147 (574)
Q Consensus 71 ~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 147 (574)
..+..++.++.+.|+.++|...+..+. .++...|--+.-.+.--|.+.+|..+-.+..+ ++.....++...-
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlah 132 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHH
Confidence 444455588889999999999998774 46666777777777777888888887665432 3333445555566
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHHH-HHHHHhcCChHHHHHH
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAM-IVGYASVGDLVEAKTV 224 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~ 224 (574)
+.++-++-..+++.+.+. ..-..+|.++.--.-.+.+|++++.++.. |+-...|.. .-+|.+..-++-+.++
T Consensus 133 klndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 788888777777776542 23344566665556678999999999886 444455543 4567778878777777
Q ss_pred HhhcCC--CC-cchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhc-----CChHHHHHHHhhCCCCCHh
Q 046956 225 FDLMPE--RS-NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV-----GDMTSARSLFEAAPDRDVV 296 (574)
Q Consensus 225 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~ 296 (574)
+.--.+ || +...|..+....+.-.-..|++-..++ ..|...-...+.-.++. .+-+.|++++..+.+.=+.
T Consensus 208 l~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l-adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 208 LKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL-ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH-HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 765543 33 333444333333322222222222222 11111111223333332 2446777777666655555
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCCcchHHHHHHHHHHhCCCCChhhHHHH
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA-----CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (574)
+...|+--|.+.+++.+|..+.+++.. ..|-......+..+ .........|.+.|+.+-.++...++..-...
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 666777788999999999999888742 34444444443332 22223355677788877777776665545667
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCc
Q 046956 372 LVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT-IVLTACSHVGL 447 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 447 (574)
+...+.-..++++++..++.+.. .|-..--.+..+++..|++.+|.++|-+.....+ .|..+|. .|.++|.+.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCC
Confidence 78888888899999998888773 2333333468889999999999999987654333 3445554 56678899999
Q ss_pred HHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWG 504 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 504 (574)
++.|+.++-++.. +.+. .....+...+.+++.+=-|.+.|+.+ ..+|++..|.
T Consensus 444 P~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred chHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 9999888765532 2333 33445567888999988888888887 4678887774
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.2e-08 Score=88.18 Aligned_cols=384 Identities=13% Similarity=0.041 Sum_probs=246.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCC-CChhhHHHHHHHHHhcC-ChHHHHHHHhhcCCCCcchHHHHHHHHHccC--C
Q 046956 173 VGTSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVG-DLVEAKTVFDLMPERSNVSWNALIGGLVKIG--D 248 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 248 (574)
.-...+.+|...++-+.|.....+.+. .....-+.++.-+.+.| +-.++.--+......-+..... |.+..+.+ .
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~v~g 177 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHhhcc
Confidence 334456667777777888887777765 23333444444444333 2222222222221111111111 11111111 1
Q ss_pred hHHHHHHHhcCC-CCchhHHHHHHHHHH--hcCChHHHHHHHhhC-----CCCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 249 LRSARQLFDEMP-ERNVVSYTTMIDGYA--KVGDMTSARSLFEAA-----PDRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 249 ~~~a~~~~~~~~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
.+.+--....+. .++......-+.+++ ..++...|...+-.+ ...|+.....+...+...|+.++|...|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 111111111111 222233333344333 344444444444322 235788899999999999999999999999
Q ss_pred HHHCCCCCCHHH-HHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CC
Q 046956 321 MCSKNVQPDEFI-LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RD 396 (574)
Q Consensus 321 m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 396 (574)
.... .|+..+ .....-.+...|+.+....+...+......... -+..-+......+++..|..+-++..+ .+
T Consensus 258 ~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 258 TLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS--HWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred HhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh--hhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 8754 443322 222223345677777777776666543311111 233334445567889999999988775 34
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
+..+-.-...+...|++++|.-.|+..+. +.|. ...|..|+.+|...|.+.+|...-+...+ .++.+..+...+.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFG 409 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhc
Confidence 45555556778899999999999999887 5664 46999999999999999999998888876 5666777766653
Q ss_pred -HHHh-hcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 476 -DLLG-RTGHLKSAYELLNSM-PVEPHAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 476 -~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
..+. ....-++|.+++++. ..+|+.. ..+.+...|...|.++.++.++++.+...|+ ......|++++...+.++
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHH
Confidence 3333 334568899999887 7788754 5566668899999999999999999998888 778999999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 046956 552 DVCLVRSKMKERGLR 566 (574)
Q Consensus 552 ~a~~~~~~~~~~~~~ 566 (574)
+|...|......+++
T Consensus 489 ~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999988876654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=1e-09 Score=99.33 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=108.8
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (574)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 3456666666666777777777766665542 22233344444444444444444444444443322
Q ss_pred HhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 046956 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~ 453 (574)
.+...+..+...+...|++++|...+++.......+ ....+..+..++...|++++|..
T Consensus 97 --------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 97 --------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred --------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 223344555555556666666666666655432112 22344555556666666666666
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+++..+ ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|+.++|..+.+.+.+..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 157 YLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6666665 22334455666666666667777666666655 2222 33444445556666677777776666655543
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=2.9e-10 Score=105.55 Aligned_cols=233 Identities=11% Similarity=0.018 Sum_probs=145.6
Q ss_pred hCCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH
Q 046956 307 QNGQPDEAVKIFSDMCSKN-VQPD--EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (574)
..++.+.++.-+.+++... ..|+ ...|......+...|+.+.|...+....+..+.. ...++.++..+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCCHH
Confidence 3456677788887777542 2222 3456666677778888888888888887765443 336888888888888888
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 384 RAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 384 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+|...|+...+ | +...|..+..++...|++++|++.+++..+. .|+..........+...++.++|...+++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888887753 3 4567777777788888888888888888773 45443222222223456778888888866554
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHL--KSAYELLNSM-PV----EP-HASAWGALLGACKLYSDIELGELVANRLFELEP- 531 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p- 531 (574)
...|+...+ .+... ..|+. +++.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+|
T Consensus 194 --~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 --KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred --hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 333332221 22222 23443 3333333322 11 11 234677777888888888888888888888875
Q ss_pred CCchhHHHHHHHHHhcC
Q 046956 532 QNAGSYVLLSNIYATAD 548 (574)
Q Consensus 532 ~~~~~~~~l~~~~~~~g 548 (574)
+.+.....+.+.....+
T Consensus 269 ~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 269 NFVEHRYALLELALLGQ 285 (296)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 55555555655544433
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=8.9e-11 Score=102.34 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=185.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh
Q 046956 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378 (574)
Q Consensus 299 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (574)
+.+.++|.+.|.+.+|.+.|+.-++. .|-..||..+-..|.+..+++.|..++...++.-+.. ......+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~--VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD--VTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch--hhhhhhhHHHHHH
Confidence 45677788888888888877777665 4556677777777888788888877777766543222 2145567778888
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 379 CGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.++.++|.++|+...+ .++.....+...|...++++-|+.+|+++.+.| .-++..|..+.-+|...+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8889999999988774 355666667778888999999999999999998 456778888888999999999999999
Q ss_pred HHhHhhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 456 EAMQNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 456 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
+++... .-.|+ ..+|..+.......|++.-|.+.|+-. ..+| +...++.+.-.-.+.|++++|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 998875 44455 477888999999999999999999887 3334 567888888888899999999999999999999
Q ss_pred CCchhHHHH
Q 046956 532 QNAGSYVLL 540 (574)
Q Consensus 532 ~~~~~~~~l 540 (574)
+-.+...++
T Consensus 461 ~m~E~~~Nl 469 (478)
T KOG1129|consen 461 DMAEVTTNL 469 (478)
T ss_pred cccccccce
Confidence 865554444
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=5.8e-10 Score=113.29 Aligned_cols=209 Identities=11% Similarity=-0.044 Sum_probs=163.7
Q ss_pred CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh---------cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 046956 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK---------CGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGH 412 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 412 (574)
+.++|...+++..+..+.... .+..+..+|.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~--a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIA--PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHH--HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 457888889988876655433 56666655542 3458899999998874 366788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
+++|...|+++.+. .|+ ...+..+...+...|++++|...++++.+. .|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999994 565 457888888999999999999999999863 343 33344455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 491 LNSM--PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 491 ~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
++++ ...|+ ...+..+..++...|++++|...++++....|.+......++..|...| ++|...++++.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9887 22354 4445666688889999999999999998888998889999999888888 488887877665
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=7.9e-12 Score=80.88 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=43.3
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhc
Q 046956 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148 (574)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 148 (574)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=6.8e-09 Score=96.48 Aligned_cols=212 Identities=17% Similarity=0.037 Sum_probs=142.9
Q ss_pred CcchHHHHHHHHHHhCC-CC-ChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 046956 345 NLDLSNWVDSYLSRSHM-DL-SRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSL 419 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 419 (574)
..+.++.-+..++.... .+ .....+..++..|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555554322 11 1123677888888899999999988887763 3567888888899999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 046956 420 FDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PV 496 (574)
Q Consensus 420 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 496 (574)
|++.++ +.|+. .++..+..++...|++++|.+.+++..+. .|+..........+...++.++|.+.|++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999887 45654 57777888888889999999999888863 333222222223345667889998888654 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 497 EPHASAWGALLGACKLYSDIELGELVANRLF-------ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.|+...+ .......|+...+ ..++.+. ++.|+.+.+|..++.++...|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 1222334544333 2333333 45667778899999999999999999999998887665
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=1.1e-07 Score=91.29 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCc
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM-PVEPHAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (574)
.++..+-+.|+++.|..+++.+ .-.|+.. .|..-.+.+...|++++|...++++.+++-.|..+-..-+.-..++++.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 3555666677777777777666 3344432 2223335666667777777777777776655555555566666667777
Q ss_pred hHHHHHHHHHHhCCC
Q 046956 551 LDVCLVRSKMKERGL 565 (574)
Q Consensus 551 ~~a~~~~~~~~~~~~ 565 (574)
++|.++.....+.|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 777777766666553
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.5e-11 Score=77.31 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=6.3e-08 Score=95.16 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCC---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR---DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
++..+...|-..|++++|++.+++..+. .+..|..-...+-+.|++.+|.+.++...... .-|...-+.....+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 3344556666677777777777765542 24556666666777777777777777766553 2244444455556666
Q ss_pred cCCcchHHHHHHHHHHhCCCCChh-------hHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRA-------HVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
.|++++|..++....+.+..+... ......+.+|.+.|++..|.+.|..+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677777766666665555322211 011334556666666666665554443
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=8.1e-08 Score=93.92 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVD 476 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 476 (574)
.|......+...++.++|...+.+.... .|- ...|......+...|...+|.+.|..... +.| ++....+++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 5666777888899999999888888773 444 44777777788889999999999998884 444 4688899999
Q ss_pred HHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 477 LLGRTGHLKSAYE--LLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 477 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
++.+.|+..-|.+ ++..+ ..+| +...|..+...+.+.|+.++|...|..++++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998877777 77777 6666 5788999999999999999999999999999877664
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=4.2e-09 Score=101.97 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCC----------CHh-HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR----------DVV-AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++++|..+|+++...-.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e-------- 272 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE-------- 272 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH--------
Confidence 4455677777777777777776554321 111 223345555666666666666666543200
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----------CCh-hHHHHH
Q 046956 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----------RDV-VSYCSM 403 (574)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~l 403 (574)
.. .-...+....+++.|..+|.+.|++++|...++...+ +.+ ..++.+
T Consensus 273 ---~~------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 273 ---EV------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred ---Hh------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 00 0011122222455556666666666666555554431 222 235566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CC--CCc-HHH
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSE---GLTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AI--VPS-PEH 470 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~---g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~--~p~-~~~ 470 (574)
+..+...+++++|..++++..+. -+.++. .+++.|...|.+.|++++|.+++++++... +. .+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 67777888888888888765532 122222 378889999999999999999999887642 11 122 356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM--------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
++.+...|.+.+++++|.++|.+. +..|+ ..++..|...|...|+++.|+++.+.++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888899999998888888765 23454 34788888999999999999999998875
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=7.1e-07 Score=85.81 Aligned_cols=181 Identities=12% Similarity=0.118 Sum_probs=107.2
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChH
Q 046956 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188 (574)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 188 (574)
-.+...|+-++|......-....+. +.+.|..+.-.+....++++|.+.+..+...+ +.|...+.-|.-.-++.|+++
T Consensus 49 L~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred chhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 3445677778887777766665443 56677777666667778888888888877765 445566666655556667776
Q ss_pred HHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcchHHH------HHHHHHccCChHHHHH
Q 046956 189 CARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-----RSNVSWNA------LIGGLVKIGDLRSARQ 254 (574)
Q Consensus 189 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~------l~~~~~~~~~~~~a~~ 254 (574)
.....-....+ .....|..++.++.-.|+...|..+++...+ ++...+.. -.......|..++|.+
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 66665555544 2345677777777777888877777766543 22222211 1223344555566655
Q ss_pred HHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 046956 255 LFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPD 292 (574)
Q Consensus 255 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 292 (574)
.+... ++.. ..-..-...+.+.+++++|..++..+..
T Consensus 207 ~L~~~-e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 207 HLLDN-EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhh-hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 55543 2221 1222334455555666666666655544
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=1.4e-08 Score=84.81 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=88.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 443 (574)
++..+...|.+.|+.+.|.+.|++..+ .+-.+.|....-+|.+|++++|...|++....-.-+.. .+|..+.-+..
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 344444455555555555555554432 23344555555555666666666666665553222222 35555555555
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
+.|+.+.|...|++..+ ..+-.+.....+.+...+.|++-.|..+++.. ...+...++...+..-...||-+.+.+
T Consensus 151 ~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 151 KAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred hcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 66666666666666654 23333445555566666666666666666555 223445555444555556666666666
Q ss_pred HHHHHHhhCCCCch
Q 046956 522 VANRLFELEPQNAG 535 (574)
Q Consensus 522 ~~~~~~~~~p~~~~ 535 (574)
.=.++.+..|.+..
T Consensus 229 Y~~qL~r~fP~s~e 242 (250)
T COG3063 229 YQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhCCCcHH
Confidence 55555555665544
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.8e-07 Score=86.63 Aligned_cols=414 Identities=10% Similarity=0.037 Sum_probs=250.4
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCCh--hhHHHHHHHHHhcCChHH
Q 046956 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV--VSWTAMIVGYASVGDLVE 220 (574)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 220 (574)
++.+...|++++|.+....++..+ +.|...+..-+-+..+.+++++|+.+.+.-..... +-+-.=+.+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 455667889999999999998876 55666777777788899999999977765432111 111112334457899999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHH-hcCChHHHHHHHhhCCCC---CHh
Q 046956 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA-KVGDMTSARSLFEAAPDR---DVV 296 (574)
Q Consensus 221 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~ 296 (574)
|+..++...+.+..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+ ..+-.-.+. +.+..... +-.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYE 176 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHH
Confidence 9999996666676677777888999999999999999775544444433332211 111111121 23333332 233
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCC-------CCC------CH-HHHHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKN-------VQP------DE-FILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~p------~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
.+......+...|++.+|+++++...+.+ -.- +. ..-..+...+-..|+.++|..++..+++.+..
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 33344566788999999999999883221 111 11 12233455667789999999999988877654
Q ss_pred CCh--hhHHHHHHHHhHhcCCHH-HHHHHHhhCCC---------------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 363 LSR--AHVIAALVDMNAKCGNMD-RAAELFETMPN---------------RDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 363 ~~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
-.+ ....|.|+.+-....-++ .+...++.... ..+..-+.++..|. +..+.+.++.....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP 334 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC
Confidence 332 112233332221111111 12222222111 11111222333333 23334443333321
Q ss_pred HCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH--------h
Q 046956 425 SEGLTPDEVAFTIVLTACS--HVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLN--------S 493 (574)
Q Consensus 425 ~~g~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~ 493 (574)
. ..|.. .+..++..+. +...+..+..++....+ +.+-+ ..+....+......|+++.|.+++. .
T Consensus 335 ~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 335 G--MSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred c--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1 23333 3444444332 23357778888888776 44433 5666778888999999999999998 3
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 494 M-PVEPHASAWGALLGACKLYSDIELGELVANRLFEL----EPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 494 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+ ...-.+.+...+...+.+.++.+.|..++..++.- .+. --..+..++..-.+.|+-++|..+++++.+.+.
T Consensus 410 ~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 410 ILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred hhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 3 23344566677777788888888888888888763 222 223455566667788999999999999987543
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=1.5e-07 Score=91.38 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=47.8
Q ss_pred hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
.....|.+|+.+++.+........ .|..+.+-|+..|+++.|+++|.+.. .++-.|..|.+.|++++|.++-
T Consensus 743 i~akew~kai~ildniqdqk~~s~---yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASG---YYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccc---cchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 344445555555555544332222 34455555555555555555554432 2334445555555555555544
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 421 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.+.. |.......|..-..-+...|++.+|.++|
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3322 12222233433333444445555554444
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-07 Score=88.37 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=153.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh-----hHHHHH
Q 046956 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA-----HVIAAL 372 (574)
Q Consensus 298 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l 372 (574)
...+..+..+..++..|++-+....+.. -+..-++....++...|.............+.|...... ..+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666666777777777777776653 233334444445666666666655555555444332211 123334
Q ss_pred HHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 046956 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a 451 (574)
..+|.+.++++.|+..|.+...+... -....+....+++........- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 55677778888888888875521110 1122233445566665555444 344432 223336677888999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+..|.+++. ..+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++....+++.|.+.|+++++.
T Consensus 378 v~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999887 44666788888999999999999888877666 44554 334544556667777899999999999999
Q ss_pred CCCCchhHHHHHHHHHhc
Q 046956 530 EPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~ 547 (574)
+|++..+...+.+++...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999888888888776653
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=6.1e-08 Score=97.15 Aligned_cols=502 Identities=13% Similarity=0.065 Sum_probs=258.7
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
..++..+...-+.++-...-..++++|..-.+...|.+.|+... ..+..++......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 44566666656655544444444478877778888999998875 456678888999999999999999884333222
Q ss_pred CC-CCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhh-HHH-
Q 046956 131 EA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS-WTA- 207 (574)
Q Consensus 131 ~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~- 207 (574)
.. ..-...|...--.+...++...+..-|+...+.. +-|...|..|+.+|.++|++..|.++|.+...-++.. |..
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 11 0011222223334567788888888888887765 4577889999999999999999999998877633332 222
Q ss_pred -HHHHHHhcCChHHHHHHHhhcCCC----------CcchHHHHHHHHHccCChHHHHHHHhc-----------CCCCchh
Q 046956 208 -MIVGYASVGDLVEAKTVFDLMPER----------SNVSWNALIGGLVKIGDLRSARQLFDE-----------MPERNVV 265 (574)
Q Consensus 208 -li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~-----------~~~~~~~ 265 (574)
.....+..|.+.+|+..+...... -..++..+...+...|-..++..+++. ....+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 223445678888888887766421 111222222222222222222222220 0001111
Q ss_pred HHHHHHHH-------------------HH----hcCCh---H---HHHHHHhhCCC--CCHhHHHHHHHHHHh----C--
Q 046956 266 SYTTMIDG-------------------YA----KVGDM---T---SARSLFEAAPD--RDVVAWSALISGYAQ----N-- 308 (574)
Q Consensus 266 ~~~~l~~~-------------------~~----~~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~-- 308 (574)
.|-.+.++ +. ..+.. + -+.+.+-.-.+ .+..+|..++..|.+ .
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 11111111 11 11111 0 00000000000 122344444444333 1
Q ss_pred --CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHH
Q 046956 309 --GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386 (574)
Q Consensus 309 --~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (574)
.+...|+..+.+..+.. .-+..+|+.+ ......|++.-+..-|-+.....+... ..|..+...+.+..+++.|.
T Consensus 795 t~~~~~~Ai~c~KkaV~L~-ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~--~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC-ANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCH--CQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh-hccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccch--hheeccceeEEecccHHHhh
Confidence 11224555555554431 1223333333 233444444444433333332222221 24555555555555555555
Q ss_pred HHHhhCCC------------------------------------------CChhHHHHHHHHHHHcCChHHHHHHHHH--
Q 046956 387 ELFETMPN------------------------------------------RDVVSYCSMIKGLSIHGHGRQAVSLFDR-- 422 (574)
Q Consensus 387 ~~~~~~~~------------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~-- 422 (574)
..|..... ++..-|-.........|+.++-+...++
T Consensus 871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 55554442 1111222222223344444433332222
Q ss_pred --------HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHH----HHHHHHhhcCCHHHHHHH
Q 046956 423 --------MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA----CMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 423 --------m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~ 490 (574)
... |.+.+...|........+.+.+..|.+...+....-...-+...|+ .+.+.+...|.++.|..-
T Consensus 951 sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 951 SASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 222 2223345666666666667777776666655442211122333444 455667778888888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 491 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.......+......-+.. .-.|+++++.+.|++++.+-.++ ......++......+.-+.|...+=+.+.
T Consensus 1030 ~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 7665433333333333322 44678999999999999874332 34555666667777787888776655543
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=4.1e-07 Score=88.38 Aligned_cols=428 Identities=12% Similarity=0.097 Sum_probs=224.7
Q ss_pred CCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHH
Q 046956 83 ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162 (574)
Q Consensus 83 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 162 (574)
..++.+|+.+|-+- | .-...|..|..-.+|++++.+-+. .|.+.-...-.+.+.++...|.-+.|-++-.
T Consensus 544 ~kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~-- 613 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKE-- 613 (1636)
T ss_pred HhhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhcc--
Confidence 34567777777432 1 122346666777778888877543 2222111222334555556666555544321
Q ss_pred HHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH
Q 046956 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240 (574)
Q Consensus 163 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 240 (574)
.+- --.+.|..|.+.|....|.+....=. -.|......+..++.+..-+++|-.+|+++..++. .+
T Consensus 614 ------sdg-d~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----al 681 (1636)
T KOG3616|consen 614 ------SDG-DGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----AL 681 (1636)
T ss_pred ------ccC-ccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HH
Confidence 111 12356778888888877766543222 24555556666666666666666666666654432 12
Q ss_pred HHHHccCChHHHHHHHhcCCCC-------------------ch--------hHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046956 241 GGLVKIGDLRSARQLFDEMPER-------------------NV--------VSYTTMIDGYAKVGDMTSARSLFEAAPDR 293 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~-------------------~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (574)
..+.+-.-+.+|.++-.-.-+. |. ....--+.+.....++.+|+.+++.+.+.
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 2222222233333333200000 00 01111233344455666666666666554
Q ss_pred CHh--HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHH
Q 046956 294 DVV--AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371 (574)
Q Consensus 294 ~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (574)
++. -|..+...|...|+++.|.++|-+.- .+.-.+..|.+.|+|+.|.++-.+.. |+..... .|-.
T Consensus 762 k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~-~yia 829 (1636)
T KOG3616|consen 762 KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATIS-LYIA 829 (1636)
T ss_pred ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHH-HHHH
Confidence 432 24555566666666666666665431 22334555666666666655543332 2222222 4555
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHH
Q 046956 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVE 449 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~ 449 (574)
-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++..+- .|+. .|...+..-+...|+..
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChh
Confidence 55555666666667666666666653 355666667766666665542 3332 36666667777778888
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHH------HHHHHHhcCCHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP----HASAWGA------LLGACKLYSDIELG 519 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~------l~~~~~~~~~~~~a 519 (574)
.|...|-+... |.+-++.|...+.|++|-++-+.-+... -...|.. ....+-++|..+.+
T Consensus 900 aae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 900 AAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred HHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 87776655432 4445566667777777777665542110 0111111 11223344444444
Q ss_pred HHHH------HHHHh-----hCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 520 ELVA------NRLFE-----LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 520 ~~~~------~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+... +-+++ .....+.....++..+...|++++|.+.+-+.++-+
T Consensus 970 id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 4321 11221 123446677778888888899998887777666544
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=1.3e-07 Score=93.01 Aligned_cols=283 Identities=13% Similarity=0.080 Sum_probs=151.5
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c-----
Q 046956 272 DGYAKVGDMTSARSLFEAAPD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS-Q----- 342 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~----- 342 (574)
..+...|++++|++.++.... .| ..........+.+.|+.++|..+|..+++. .|+...|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 344556666666666655433 12 333445556666666666676666666665 344444444333332 1
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH-HHHHHHhhCCCCCh-hHHHHHHHHHHHcCChHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD-RAAELFETMPNRDV-VSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
..+.+....+++.+...-+.... ...+.-.+.....+. .+..++......++ .+|+.+-..|......+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~---~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDA---PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccc---hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 11234445555555443322221 111111111111121 22233333333333 34444444444333333334444
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 421 DRMLSE----G----------LTPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 421 ~~m~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
...... | -+|+. .++..+...|...|++++|++++++++. .-+-.++.|..-++.|-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCH
Confidence 443321 1 12333 2445566677788888888888888875 3333367777778888888888
Q ss_pred HHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC-------chhHHHHHHHHHhcCCchHH
Q 046956 485 KSAYELLNSM-PVEPHASAW-GALLGACKLYSDIELGELVANRLFELE--PQN-------AGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 485 ~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a 553 (574)
++|.+.++.+ ..++...-. +.....+.+.|++++|.+.+....+.+ |.. .+.....+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888888777 334433333 334466778888888888877765543 221 22334567778888888888
Q ss_pred HHHHHHHH
Q 046956 554 CLVRSKMK 561 (574)
Q Consensus 554 ~~~~~~~~ 561 (574)
++.|..+.
T Consensus 325 Lk~~~~v~ 332 (517)
T PF12569_consen 325 LKRFHAVL 332 (517)
T ss_pred HHHHHHHH
Confidence 77765543
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.2e-06 Score=85.29 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=186.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCC-CCcc-----hHH---------------------------HHHHHHHcc
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-RSNV-----SWN---------------------------ALIGGLVKI 246 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~---------------------------~l~~~~~~~ 246 (574)
.|+...+.-+.++...+-+.+-+++++++.- +++. .-+ .+...+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 4556666667777777777777777777642 1111 111 122334445
Q ss_pred CChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046956 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326 (574)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 326 (574)
+-+++|..+|+.. +.+....+.|+. ..+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 5567777777766 555555555554 34566777776666654 457889999999999999998877543
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 406 (574)
-|+..|..++..+.+.|.+++-.+++..+.+...++. +-..|+-+|++.+++.+.++++. .||......+.+-
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~---id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY---IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDR 1203 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHH
Confidence 3677899999999999999999999988888776665 45678999999999888777653 4555556666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
|...|.++.|.-+|... ..|..|...+...|++..|...-+++- +..+|..+..+|...+.+.-
T Consensus 1204 cf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhH
Confidence 66667777666655432 234455555555555555554433321 23444444444444433322
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
|.-. .+.+-.....+..++..|...|-+++-+.+++..+.+.......+..|+-+|.
T Consensus 1268 AQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1268 AQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 2100 00011122334444445555555555555555555444444444444444443
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.9e-08 Score=94.25 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=154.5
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCCh---h-------HHHH
Q 046956 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV---V-------SYCS 402 (574)
Q Consensus 333 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~ 402 (574)
...+..+..+..+++.+.+-+....... .+.. .++....+|...|.+.++...-+...+... . .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it-~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDIT-YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhH-HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666677777888888888877766 2333 677778888888888777766655443211 1 1222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 481 (574)
+..+|.+.++++.++..|.+.......|+.. .+....+++....+... -+.|.. .-...-...+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhc
Confidence 3446666778888888888876644444332 22233344444433332 233432 1222336778899
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 482 GHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
|++..|++.+.++ ...| |...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4456 5678888889999999999999999999999999999999999999999999999999998
Q ss_pred HHhCCC
Q 046956 560 MKERGL 565 (574)
Q Consensus 560 ~~~~~~ 565 (574)
..+.+.
T Consensus 452 ale~dp 457 (539)
T KOG0548|consen 452 ALELDP 457 (539)
T ss_pred HHhcCc
Confidence 877653
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.1e-07 Score=82.36 Aligned_cols=407 Identities=13% Similarity=0.098 Sum_probs=222.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHHH-HHHHHhc
Q 046956 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAM-IVGYASV 215 (574)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~ 215 (574)
+.+++..+.+-.++..|++++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|... ...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555544443 11333444455555555555555555555543 333333222 3445556
Q ss_pred CChHHHHHHHhhcCCCCc-c--hHHHHHHHHHccCChHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046956 216 GDLVEAKTVFDLMPERSN-V--SWNALIGGLVKIGDLRSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 216 g~~~~a~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
+.+..|+++...|...+. . ....-.....+.+++..+..+.+... +.+..+.+.......+.|+++.|.+-|....
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 666666666666655311 1 01111112234667777777777664 3556666666667778888888888888766
Q ss_pred C----CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh
Q 046956 292 D----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 292 ~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (574)
+ ....+|+.- -+..+.|+++.|++...++.+.|++-.+..-..+..--.....+..-..+..... ..
T Consensus 172 qvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal--------~e 242 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL--------VE 242 (459)
T ss_pred hhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH--------HH
Confidence 5 345566644 4556678899999999999888764321110000000000000000011111110 01
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTA 441 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 441 (574)
.++.-...+.+.|+++.|.+.+-.|.. -|++|...+.-.- ..+++.+..+-+.-+.+. .| ...||..++-.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLll 319 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLL 319 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 455556677889999999999999983 4677766554332 234555555555555554 44 34699999999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH-hhcCCHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCC---
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL-GRTGHLKSAYELLNSMPVEPHASAWGALL--GACKLYSD--- 515 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~--~~~~~~~~--- 515 (574)
|++..-++.|-.++.+-....-.-.+...|+. ++++ ...-..++|.+-++.+........-...+ ..-...++
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 99999888888887653321001123344443 3444 34557788877766652110011111111 11111222
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
...+++-|++.+++. ..+....++.|....++..+.++|..-.+
T Consensus 399 ~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 233445555655543 12456678889999999999999987654
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=9.8e-07 Score=86.93 Aligned_cols=319 Identities=14% Similarity=0.097 Sum_probs=197.5
Q ss_pred chhHHHHHH-HHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC---------CCCCcc
Q 046956 68 DHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE---------AVPDKY 137 (574)
Q Consensus 68 ~~~~~~~ll-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---------~~~~~~ 137 (574)
|+.+--+++ -++|..-|+.+.|.+..+-+. +-..|..|.+.+.+.++.+-|.-.+-.|.... ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 455555555 134667789998888776654 34569999999999998888877666654321 1222 2
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC-CChhhHHHHHHHHHhcC
Q 046956 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVG 216 (574)
Q Consensus 138 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g 216 (574)
+=..+.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-.. .-..||.....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222333345779999999999987764 3455677888999999988765433 22346777777777889
Q ss_pred ChHHHHHHHhhcCCC-----------------------CcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHH
Q 046956 217 DLVEAKTVFDLMPER-----------------------SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273 (574)
Q Consensus 217 ~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 273 (574)
+.+.|++.|++...+ |...|.-...-+-..|+.+.|+.+|... .-|..+++.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI 947 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRI 947 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheee
Confidence 999999999876432 4444444555555666666666666543 234555666
Q ss_pred HHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------
Q 046956 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----------- 342 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----------- 342 (574)
.|-.|+.++|-++-++-. |..+...+.+.|-..|++.+|...|.+... |...|+.|-.
T Consensus 948 ~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred EeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence 666666666666655433 556666788888888888888888876642 2222322211
Q ss_pred --cC--CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--------------CCChhHHHHHH
Q 046956 343 --VG--NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--------------NRDVVSYCSMI 404 (574)
Q Consensus 343 --~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~li 404 (574)
.| +.-.|.++|+.. |. -...-+..|.+.|.+.+|+++--+-. ..|+...+.-.
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---ch------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 11 112222333322 11 12334556777787777776532222 13556666666
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRM 423 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m 423 (574)
.-++.+.++++|..++-..
T Consensus 1088 dFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 6667777777777666543
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=1.7e-07 Score=82.90 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCCchhHHHHHH---HHHHhcCChHHHHHHHhhCCC--CCHh-HHHHHHHHHHhCCCc
Q 046956 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI---DGYAKVGDMTSARSLFEAAPD--RDVV-AWSALISGYAQNGQP 311 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~ 311 (574)
-+...+...|++..|+.-|....+.|+..|.++. ..|...|+-..|+.-++++.+ ||-. +...-...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 4556666677777777777644455555555543 456666666666666666554 3321 122233456677777
Q ss_pred hHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 312 DEAVKIFSDMCSKNVQPDE--------------FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
++|..-|+..++.....+. ......+..+...|+...++.....+++..+ ++.. .+..-..+|.
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~-l~~~Rakc~i 200 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDAS-LRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhH-HHHHHHHHHH
Confidence 7777777777665321100 0111122223334444444444444444321 1111 4444445555
Q ss_pred hcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 378 KCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
..|++..|+.-++... ..+.....-+-..+...|+.+.++...++-++
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555544333322 23333444444444444555555544444444
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=5.4e-09 Score=98.72 Aligned_cols=214 Identities=13% Similarity=0.109 Sum_probs=155.2
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
+.|++.+|.-.|+..++.++. ....+..|+......++-..|+..+.+..+ .|....-.|.-+|...|.-.+|+.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 445555555555555554332 223566666666666766677777766653 244566666677777777778888
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 419 LFDRMLSEGLTPDEVAFTIVL-----------TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
.+++-+... |... .+. ..+..........++|-++....+..+|+.++..|.-.|.-.|.+++|
T Consensus 375 ~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 887765532 1110 000 122223334455566666665446668899999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 488 YELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 488 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
++.|+.+ .++| |...|+.+...+....+.++|+..|.+++++.|....+.+.|+-.|...|.|++|.+.|=..+.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999988 6777 5778999999999999999999999999999999999999999999999999999998876653
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=3.2e-08 Score=90.46 Aligned_cols=250 Identities=15% Similarity=0.086 Sum_probs=143.6
Q ss_pred HHhcCChHHHHHHHhhCCC--C--CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchH
Q 046956 274 YAKVGDMTSARSLFEAAPD--R--DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 349 (574)
+.-.|++..++.-.+ ... + +......+.+++...|+++.++ .+..... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666664443 111 1 2334445566677777665443 3333222 55555554444444433333333
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 429 (574)
..-++.............+....+.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333322222222222213333445666778888888888765 45666677788888888888888888888873 3
Q ss_pred CCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 046956 430 PDEVAFTIVLTACSH----VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAW 503 (574)
Q Consensus 430 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 503 (574)
.| .+...+..++.. .+.+.+|..+|+++.+ .+.+++.+.+.++.+....|++++|.+++++. ...| ++.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 34 334444444322 2357888888888776 56677788888888888888888888888775 3344 35556
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCch
Q 046956 504 GALLGACKLYSDI-ELGELVANRLFELEPQNAG 535 (574)
Q Consensus 504 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 535 (574)
..++......|+. +.+.+.+.++...+|+.+.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 6666666666766 5667777777777887654
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=1.2e-06 Score=84.76 Aligned_cols=297 Identities=11% Similarity=-0.023 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPD---RD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
...+..+...+...|+.+.+.+.+....+ .+ ..........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555666666667777776555544321 12 1222233445677889999999999887752 223333332 2
Q ss_pred HHHhc----cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 046956 338 SACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIH 410 (574)
Q Consensus 338 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 410 (574)
..+.. .+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 22222 3444444444443 1222333332455667788899999999999998773 3456778888899999
Q ss_pred CChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH-H--HHHHHHhhcCCH
Q 046956 411 GHGRQAVSLFDRMLSEGL-TPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-A--CMVDLLGRTGHL 484 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~ 484 (574)
|++++|..++++...... .|+. ..|..+...+...|++++|..+++++.......+..... + .+...+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998887421 1232 245577888899999999999999986431111222211 1 223333444432
Q ss_pred HHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C--------CCchhHHHHHHHHHhcC
Q 046956 485 KSAYEL---LNSM----PVEPHASAWGALLGACKLYSDIELGELVANRLFELE-P--------QNAGSYVLLSNIYATAD 548 (574)
Q Consensus 485 ~~A~~~---~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g 548 (574)
+.+.+. .... ..............++...|+.+.|...++.+.... . .........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 1111 111111222244567788999999999998876642 1 13456677888899999
Q ss_pred CchHHHHHHHHHHhCC
Q 046956 549 RWLDVCLVRSKMKERG 564 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~ 564 (574)
++++|.+.+.+.....
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877543
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=2.9e-07 Score=81.44 Aligned_cols=187 Identities=8% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 380 (574)
.+..+...|+...|+.....+++. .+-|...+..-..+|...|++..|+.=+..+.+...+.+. ....+...+...|
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVG 237 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhh
Confidence 445566788889999988888875 3557777777788888889888888777777665544443 5667788888889
Q ss_pred CHHHHHHHHhhCCC--CChhH----HHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCC--HH---HHHHHHH
Q 046956 381 NMDRAAELFETMPN--RDVVS----YCSM---------IKGLSIHGHGRQAVSLFDRMLSEGLTPD--EV---AFTIVLT 440 (574)
Q Consensus 381 ~~~~A~~~~~~~~~--~~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~---~~~~l~~ 440 (574)
+.+.++..+.+..+ ||... |..+ +......+++.++++-.++..+. .|. .. .+..+-.
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeee
Confidence 99988888888775 43321 1111 11122334444455444444442 222 11 2223333
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
++...|++.+|++...++.. -.+.|+.++..-..+|.-...+++|+.-|+.+
T Consensus 316 C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred cccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444555555555554442 11222444444444454444555555544444
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=8.4e-09 Score=94.29 Aligned_cols=247 Identities=11% Similarity=0.046 Sum_probs=163.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.... .+... ....+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~-av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQ-AVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCH-HHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHH-HHHHHHHHHhCccc
Confidence 344566789999887666 332222223445556677888888765432 3333333 33333 45555555544456
Q ss_pred HHHHHHHHhhCC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 382 MDRAAELFETMP-NR----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 382 ~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
-+.+..-++... ++ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666766666544 22 2222222234455679999999888642 455677788889999999999999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 457 AMQNVYAIVPSPEHYACMVDLL----GRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.|.+ ...|. +...++.++ ...+.+.+|..+|+++ ...+++.+.+.+..+....|++++|++.++++++.+
T Consensus 156 ~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9985 33443 333344433 3334799999999999 344678888888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCc-hHHHHHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRW-LDVCLVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~ 564 (574)
|+++.++.+++.+....|+. +.+.+++.+++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 99999999999999999988 66778888877643
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=4.3e-08 Score=88.52 Aligned_cols=178 Identities=10% Similarity=-0.008 Sum_probs=116.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RD-V---VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE----VAFTI 437 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 437 (574)
.+..++..+...|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+. .|+. .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHH
Confidence 566677777777888888777776653 22 1 35566677777778888888888877764 3322 13444
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046956 438 VLTACSHV--------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509 (574)
Q Consensus 438 l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 509 (574)
+..++... |++++|.+.++.+... .+-+...+..+..... ..... ......+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHHH
Confidence 45555443 6677777777777753 2222222222211111 00000 0011244567
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 510 CKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+...|++++|+..++++++..|+++ .++..++.++...|++++|..+++.+..+.
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8899999999999999999977654 789999999999999999999999887654
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=1.7e-06 Score=87.17 Aligned_cols=435 Identities=11% Similarity=0.015 Sum_probs=250.0
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHcc
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (574)
...|+..|-+..+..+. =...|..|...|+...+...|.+.|+...+.+ ..|........+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55666666555554221 23457777777777677778888888877654 44566777788888888888888877544
Q ss_pred CCCCCh-----hhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCC--CCch-h
Q 046956 197 MPERNV-----VSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMP--ERNV-V 265 (574)
Q Consensus 197 ~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~-~ 265 (574)
..+.+. ..|....-.|.+.++...|+.-|+...+. |...|..+..+|.++|.+..|.+.|.+.. +|+. .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 433221 23444445566777778888777777653 44566677888888888888888886332 2322 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCC----------CHhHHHHHHHHHHhCCCchHHHHHHHHHHH-------CCC--
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR----------DVVAWSALISGYAQNGQPDEAVKIFSDMCS-------KNV-- 326 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~~~-- 326 (574)
.-.-..-+-+..|.+.+|...+..+... -..++-.+...+...|-..+|...++.-++ ...
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2222233455667777777776655421 122232233333333333333333332211 111
Q ss_pred ---------------------CCCHHHHHHHHHHHhccCCc---c---hHHHHHHHHHHhCCCCChhhHHHHHHHHhHh-
Q 046956 327 ---------------------QPDEFILVSLMSACSQVGNL---D---LSNWVDSYLSRSHMDLSRAHVIAALVDMNAK- 378 (574)
Q Consensus 327 ---------------------~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 378 (574)
.|+......+..-....+.. + .+.+.+-.-.+.-..+. .+..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~---~WyNLGinylr~ 788 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY---PWYNLGINYLRY 788 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc---hHHHHhHHHHHH
Confidence 12222222221112222222 1 00011100001101111 22233332222
Q ss_pred ---c----CCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 046956 379 ---C----GNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGL 447 (574)
Q Consensus 379 ---~----g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 447 (574)
+ .+...|...+.+.. ..+..+||.|.-. ...|++.-+...|-+-... .|. ..+|..+.-.+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEeccc
Confidence 1 12335677776655 3566777777655 5567777777777766653 444 4588888888889999
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPHASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
++.|...|...+. -.+.+...|.-........|+.-++..+|..- +.-|+...|......-...|++++-+
T Consensus 866 ~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999998875 34445566665555666788888888888762 22345555555544555566655444
Q ss_pred H----------HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 521 L----------VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 521 ~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
. .+++.+...|++..+|...+...-+.+.+.+|.++..+.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3 4455566689999999999999999999998888877654
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=9.1e-08 Score=82.60 Aligned_cols=120 Identities=10% Similarity=0.056 Sum_probs=74.3
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA-CKLYSD--IELG 519 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a 519 (574)
.++.+++...++...+ .-+.+...|..++..|...|++++|...++++ ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455555656665554 34455666666666666666666666666665 3444 34444444444 345555 4677
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777776655443
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=2.5e-05 Score=77.44 Aligned_cols=245 Identities=13% Similarity=0.084 Sum_probs=148.1
Q ss_pred HHhhccCCCChhhHHHHH--HHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHh-C-
Q 046956 91 AVFNRIVNPNTFLWNTLL--KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-G- 166 (574)
Q Consensus 91 ~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g- 166 (574)
+=|-...+-|..+-..|+ +-|..-|+.+.|++-.+.++ +...|..+.+.|.+..+++-|.-.+..|... |
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 333334456777777776 35678899999988876654 3456888999999998888887777766432 1
Q ss_pred ------CCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC-CcchHHHH
Q 046956 167 ------VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-SNVSWNAL 239 (574)
Q Consensus 167 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l 239 (574)
.+.+...-....-.....|.+++|..+|.+-.. |..|=..|...|.|++|+++-+.-.+- =..||..-
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 111112222333344567888999998887543 444556777889999999887653321 23467777
Q ss_pred HHHHHccCChHHHHHHHhcCCCC-----------------------chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHh
Q 046956 240 IGGLVKIGDLRSARQLFDEMPER-----------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296 (574)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 296 (574)
..-+...++.+.|++.|++-..+ |...|.--....-..|+.+.|+.+|+...
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 77777888899999888844222 22223333333334455555555554432
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHH
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 357 (574)
-|-.+++..|-.|+.++|-++-++- -|......+.+.|.+.|++.+|..+|.++.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2344444555555555555554432 144445555666666666666666655544
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=5.2e-06 Score=91.19 Aligned_cols=357 Identities=13% Similarity=0.042 Sum_probs=222.0
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcc--hHHHHHHHHHccCChHHHHHHHhcCC----CCchhHHHHHHHHHHhcCChH
Q 046956 208 MIVGYASVGDLVEAKTVFDLMPERSNV--SWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMT 281 (574)
Q Consensus 208 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 281 (574)
....+...|++.+|..........+.. ............|+++.+...+..+. ..+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344455667777776666555433211 11222334455677777777777552 122333344555667788999
Q ss_pred HHHHHHhhCCC----C----C----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCC
Q 046956 282 SARSLFEAAPD----R----D----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSLMSACSQVGN 345 (574)
Q Consensus 282 ~A~~~~~~~~~----~----~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~ 345 (574)
+|...+..... . + ......+...+...|++++|...+++..+.-...+. .....+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 98888765421 1 1 112223344566789999999999987763111121 233445556678899
Q ss_pred cchHHHHHHHHHHhCC----CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHc
Q 046956 346 LDLSNWVDSYLSRSHM----DLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------R----DVVSYCSMIKGLSIH 410 (574)
Q Consensus 346 ~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~ 410 (574)
++.|...+........ ..........+...+...|++++|...+++... + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999988887764322 111122455667788889999999988876542 1 122344556667778
Q ss_pred CChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH-----HHHHHHHhhc
Q 046956 411 GHGRQAVSLFDRMLSE--GLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-----ACMVDLLGRT 481 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~ 481 (574)
|++++|...+.+.... ...+. ...+..+...+...|++++|.+.++.+............+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999998887653 11222 2345556667788899999999988875421111111111 1122444568
Q ss_pred CCHHHHHHHHHhCCC-C-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCC
Q 046956 482 GHLKSAYELLNSMPV-E-PHAS----AWGALLGACKLYSDIELGELVANRLFELE------PQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 482 g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~ 549 (574)
|+.+.|.+.+..... . .... .+..+..++...|++++|...+++++... +....++..++.++.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 899999999877621 1 1111 13345577888999999999999988752 1223467788999999999
Q ss_pred chHHHHHHHHHHhCC
Q 046956 550 WLDVCLVRSKMKERG 564 (574)
Q Consensus 550 ~~~a~~~~~~~~~~~ 564 (574)
.++|...+.+..+..
T Consensus 747 ~~~A~~~L~~Al~la 761 (903)
T PRK04841 747 KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887644
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3e-06 Score=73.73 Aligned_cols=287 Identities=12% Similarity=0.036 Sum_probs=154.7
Q ss_pred cCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHH-HHHHHhccCCcHHHHH
Q 046956 82 LATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL-VIKACSHVLSVREGTA 157 (574)
Q Consensus 82 ~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~ 157 (574)
+..++++|++++..-. +.+....+.+.-.|....++..|...|+++-+. .|...-|.. -..++.+.+.+..|.+
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5666777777765543 224555666666677777777777777777654 334433432 2344556667777777
Q ss_pred HHHHHHHhCCCCCcchHHHHH--HHHHcCCChHHHHHHHccCC-CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---
Q 046956 158 IHAAVIRWGVDEDVFVGTSLI--DLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231 (574)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 231 (574)
+...|.+. +....-..-+ ...-..+|+..+..++++.. +.+..+.+.......+.|++++|++-|+...+-
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 76666432 1111111111 11224566666777777666 344455555555556667777777766665542
Q ss_pred -CcchHHHHHHHHHccCChHHHHHHHhcCCC-----------------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046956 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPE-----------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293 (574)
Q Consensus 232 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (574)
....|+..+ +..+.++++.|.+...++.+ +|+.....-+.+. .. .
T Consensus 177 qpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh---------~S-------a 239 (459)
T KOG4340|consen 177 QPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH---------QS-------A 239 (459)
T ss_pred CchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH---------HH-------H
Confidence 222333322 33344555555554442210 0100000000000 00 0
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
=+.++|.-...+.+.|+++.|.+.+-.|.... ...|++|...+.-.- ..+++.....-+..+...++-|.. ++..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E--TFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE--TFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH--HHHHH
Confidence 01234444555677888888888888775432 344666666543322 234455555556666666553333 78889
Q ss_pred HHHhHhcCCHHHHHHHHhhCC
Q 046956 373 VDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~ 393 (574)
+-.|++..-++-|-+++.+-.
T Consensus 317 LllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCc
Confidence 999999888888888887654
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2.9e-07 Score=95.59 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=157.0
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--------RDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
|++.+...+..+. .|-..+......++.++|.++++++.. .-...|.+++..-...|.-+...++|+++.
T Consensus 1447 ferlvrssPNSSi--~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSI--LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcCCCcch--HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3334444333333 566677777788888888888887763 223578888887777888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H
Q 046956 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---A 500 (574)
Q Consensus 425 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~ 500 (574)
+. ......|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+.++-+.|..++.++ ..-|. .
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 73 22234788888888899999999999999988544 66778888888888988888888888776 33333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
......+..-.+.||.+++..+|+..+...|.-...|..+++.-.+.|+.+.++.+|++.+..++.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 334444566678899999999999988888988889999999888999999999999988877764
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=1.2e-07 Score=77.30 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=88.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046956 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV 496 (574)
Q Consensus 418 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (574)
.++++.++ +.|+. +..+...+...|++++|...|+.+.. --+.+...|..++.++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45556555 34553 44456667778888888888888775 34446677778888888888888888888777 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 497 EP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 497 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
.| +...+..+..++...|++++|+..++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 46667777777888888888888888888888888888877766644
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=1.4e-07 Score=76.95 Aligned_cols=108 Identities=8% Similarity=-0.052 Sum_probs=92.9
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.++++..+ ..|+ .+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45556553 2344 4666788999999999999999987 5555 57788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|+++.++..++.++...|++++|...+++..+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987654
No 108
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=2.6e-06 Score=79.06 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=118.2
Q ss_pred HHHhHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 373 VDMNAKCG-NMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHG--RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 373 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
..++...| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++++.. +-|..+|.....++...|
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhh
Confidence 33333444 35566666655542 2334555544444444542 56777777777742 234457777777777778
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT---GHL----KSAYELLNSM-PVEP-HASAWGALLGACKLY---- 513 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 513 (574)
+++++++.++++++. -+-+...|+....++.+. |.. ++++++..++ ...| +...|+.+...+...
T Consensus 157 ~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 157 GWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 888888888888763 334556666655555443 222 4566666444 4455 456777777777662
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATAD------------------RWLDVCLVRSKMK 561 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~ 561 (574)
+...+|...+.+++..+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 44567889999988889999999999999998643 2367888888774
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=3.1e-05 Score=74.97 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcch-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHH---HH
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYT-FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT---SL 177 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~l 177 (574)
.|..+...+...|+.+.+...+....+... .++... .......+...|++++|..+++...+.. +.+...+. .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344455555556666666555555443321 111111 1111223346677777777777776653 22332332 11
Q ss_pred HHHHHcCCChHHHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHH
Q 046956 178 IDLYGKRKEISCARKVFDEMPE--RN-VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254 (574)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (574)
.......+..+.+.+.++.... ++ ......+...+...|++++|.+.+++..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---------------------- 144 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---------------------- 144 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------
Confidence 1222223444555555544222 11 1223334455666667777766666654321
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC--HhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046956 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-----RD--VVAWSALISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
+.+...+..+...+...|++++|...+++... ++ ...|..+...+...|++++|..++++...
T Consensus 145 ------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 145 ------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred ------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 23344455555566666666666666655443 11 12344566677777777777777777643
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=6.8e-07 Score=76.71 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
|... ..+-..+...|+-+....+..+.... .+.|......++....+.|++..|...+.++.. .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3344 55666777778777777777665442 123334555577777888888888888888876 6777888888888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 476 DLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
-+|.+.|++++|..-|.+. ...| ++...+++...+.-.||.+.|..++..+....+.+..+-..|+.+....|++.+|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 8888888888888877766 4444 4556777777788888888888888888877777888888888888888888888
Q ss_pred HHHHH
Q 046956 554 CLVRS 558 (574)
Q Consensus 554 ~~~~~ 558 (574)
..+..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 77654
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=0.00067 Score=74.72 Aligned_cols=354 Identities=11% Similarity=-0.019 Sum_probs=222.7
Q ss_pred HHHHHcCCChHHHHHHHccCCCCChhh--HHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHccCChHH
Q 046956 178 IDLYGKRKEISCARKVFDEMPERNVVS--WTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRS 251 (574)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 251 (574)
...+...|++.+|..........+... .......+...|+++.+..+++.+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 444566677777766665554432211 11223345567888888888877632 234444445556677888888
Q ss_pred HHHHHhcCC----CC----c----hhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC----HhHHHHHHHHHHhCCCc
Q 046956 252 ARQLFDEMP----ER----N----VVSYTTMIDGYAKVGDMTSARSLFEAAPD----RD----VVAWSALISGYAQNGQP 311 (574)
Q Consensus 252 a~~~~~~~~----~~----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~~~ 311 (574)
+...+.... .. + ......+...+...|++++|...+++... .+ ..+.+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 888776321 11 1 11223344566789999999998876532 22 13456667778889999
Q ss_pred hHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCCcchHHHHHHHHHHh----CCC--CChhhHHHHHHHHhHhcC
Q 046956 312 DEAVKIFSDMCSKNV---QP--DEFILVSLMSACSQVGNLDLSNWVDSYLSRS----HMD--LSRAHVIAALVDMNAKCG 380 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g 380 (574)
++|...+++.....- .+ ...++..+...+...|+++.|...+...... +.. +.....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988764311 11 1234455666778899999999988876643 211 111223455677778889
Q ss_pred CHHHHHHHHhhCCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhccC
Q 046956 381 NMDRAAELFETMPN------R--DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEV--AF--TIVLTACSHVG 446 (574)
Q Consensus 381 ~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~--~~--~~l~~~~~~~g 446 (574)
++++|...+.+... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999998887642 1 12344556677888999999999998875421 111111 11 11223345578
Q ss_pred cHHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC
Q 046956 447 LVEDGWRFFEAMQNVYAIVPS---PEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH-ASAWGALLGACKLYSD 515 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~ 515 (574)
+.+.|...+...... ..... ...+..+..++...|++++|...++++ +...+ ..+...+..++...|+
T Consensus 668 ~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999998776542 11111 112456778889999999999998876 11111 2244455578899999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 046956 516 IELGELVANRLFELEPQ 532 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~ 532 (574)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999998543
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00042 Score=70.68 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.+++-.+++..+.++ .-.|..+ ..|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45688888888888888888876643 345668889999999999999999988877775 5555544 56888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+|.+.|++.+-.+++. .|+......+..-|...|.++.|.-+|.. ...|..|+..+...|+++.|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888777664 47777778888888888888888777654 45577777778888887777655
Q ss_pred HHH
Q 046956 557 RSK 559 (574)
Q Consensus 557 ~~~ 559 (574)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 443
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=6.8e-07 Score=84.91 Aligned_cols=254 Identities=15% Similarity=0.082 Sum_probs=154.0
Q ss_pred HHHhcCChHHHHHHHhhCCCC---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCcch
Q 046956 273 GYAKVGDMTSARSLFEAAPDR---DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP-DEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 348 (574)
-+.+.|++.+|.-.|+...+. +..+|.-|.......++-..|+..+++..+. .| +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 345566666666666655442 3455666666666666666666666666554 33 23344444445555555555
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-HCC
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML-SEG 427 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g 427 (574)
|...++..++..++.... ... ...++.. + + ..+..........++|-++. +.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l------~~a-~~~~~~~-----------~---~-----~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHL------VSA-GENEDFE-----------N---T-----KSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHHHHHHHhCccchhc------ccc-Ccccccc-----------C---C-----cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 555554444333221100 000 0000000 0 0 01111112233444444443 444
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 046956 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGA 505 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 505 (574)
..+|+.....|.-.|--.|++++|...|+.+.. .-+-|-..||.|...+....+.++|+..|+++ ..+|. ...+..
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 446777777777778888999999999999885 34445688999999999999999999999888 67786 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC-----C-----chhHHHHHHHHHhcCCchHHHHH
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQ-----N-----AGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+.-.|...|.+++|...|-.++.+.+. . -.+|..|-.++..+++.|-+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 888899999999999999988887443 1 24677777777777776644443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=2e-06 Score=89.65 Aligned_cols=222 Identities=15% Similarity=0.186 Sum_probs=179.3
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHhcCCC--------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCC--CHhHHHHH
Q 046956 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPE--------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR--DVVAWSAL 301 (574)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 301 (574)
+...|...+......+++++|+++.++... .-...|.++++.-..-|.-+...++|++..+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 345677777788888888888888883321 22457888888888888888999999998873 35678899
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-+......+....+.+-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999886 44667889999999999999999999999998877665555578888899999999
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHH
Q 046956 382 MDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 382 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~ 454 (574)
.+.+..+|+.... .-...|+..++.-.++|+.+.+..+|++.+..++.|-.. .|...+..--..|+-..+..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999998874 356799999999999999999999999999998888653 666666655555665444443
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00025 Score=67.43 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=124.4
Q ss_pred HHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 382 MDRAAELFETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 382 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
.+...+.++++.. .-..+|-.++..-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4455555555542 223467778888888888999999999999988777 4457777777665 478899999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---VEP--HASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
.-.+ .+..++.--...++.+...|+-..|..+|++.. ..| ....|..++..-..-|+...+.++-++.....|
T Consensus 426 LGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8887 444455555677888899999999999999882 233 357899999888899999999999888877666
Q ss_pred CCc----hhHHHHHHHHHhcCCchHHHHHHH
Q 046956 532 QNA----GSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 532 ~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.+. ..-..+.+.|.-.+.+..-..-++
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 321 123344555666665554443333
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.3e-05 Score=67.44 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=141.0
Q ss_pred HHhcCChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchH-H
Q 046956 274 YAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-N 350 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~ 350 (574)
+.-.|++..++..-..... .+...-.-+.++|...|++.....-.. . |-.|....+..+.......++.+.- .
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~---~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIK---E-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccc---c-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3334566665554443322 233333445566666666544333221 1 1233344444444444444443332 3
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 430 (574)
.+.+.+.......+.. ....-+..|...|++++|.+....... ......=+..+.+..+.+-|...+++|.+ -.
T Consensus 94 ~l~E~~a~~~~~sn~i-~~l~aa~i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLI-DLLLAAIIYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQ---ID 167 (299)
T ss_pred HHHHHHHhhccchhHH-HHHHhhHHhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc
Confidence 3344444443333322 333445567777888888887777333 22222223445566677888888888876 33
Q ss_pred CHHHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 046956 431 DEVAFTIVLTACSH----VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWG 504 (574)
Q Consensus 431 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 504 (574)
+..|.+.|..++.+ .+.+.+|.-+|+++.+ +.+|++.+.+-.+-++...|++++|..+++++ +...++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 55567666666543 3457778888888876 57777777777777778888888888888777 3334566666
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhhCCCCch
Q 046956 505 ALLGACKLYSD-IELGELVANRLFELEPQNAG 535 (574)
Q Consensus 505 ~l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~ 535 (574)
.++..-...|. .+-..+...++....|..+.
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 66644444444 34445666666666776554
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=2.6e-06 Score=73.62 Aligned_cols=156 Identities=7% Similarity=0.091 Sum_probs=117.7
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
-+-.|...|+++.+....+.+..+. ..+...++.+++...+++..+.. +.+...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777888877655554333221 01223567788888888888753 45566899999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLL-GRTGH--LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
...|+++.+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987 4455678888888864 67777 59999999998 5556 4567777778999999999999999999
Q ss_pred HhhCCCCchhHH
Q 046956 527 FELEPQNAGSYV 538 (574)
Q Consensus 527 ~~~~p~~~~~~~ 538 (574)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999877665443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.1e-06 Score=85.90 Aligned_cols=209 Identities=11% Similarity=0.007 Sum_probs=125.0
Q ss_pred HHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCCh
Q 046956 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 336 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~ 413 (574)
+...+...|-...|..+++++. .+..++..|...|+..+|..+..... +||+..|..+++......-+
T Consensus 404 laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 3444555555555555555543 45556666666666666666554433 35555666666555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
++|.++.+..... .-..+.......++++++.+.|+.-.+ --+.-..+|-.+.-+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 5666555543221 111112222335666666666666554 2223345666666666777777777777766
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 494 M-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 494 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
. ...|+ ...|+++-.+|.+.++-.+|...++++++.+-.+..++.+..-+...-|.|++|.+.+.++.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5 44554 4567777777777777777777777777777666666666666677777777777777766543
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=3.6e-06 Score=72.33 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=122.5
Q ss_pred CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
.|....+ ..+...+.-.|+-+....+..... ..|....+..+....+.|++..|...+++..... ++|..+|+.+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 3433324 556666777777777777776644 2455667778888889999999999999988753 5566799999
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE--PHASAWGALLGACKLYSDI 516 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~ 516 (574)
.-+|.+.|+.+.|..-|.+..+ -.+-++..++.+...|.-.|+++.|..++.+.... -|...-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999999887 44455678888988999999999999999887322 2566677777888889999
Q ss_pred HHHHHHHHH
Q 046956 517 ELGELVANR 525 (574)
Q Consensus 517 ~~a~~~~~~ 525 (574)
++|+.+..+
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 998887665
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=4.3e-06 Score=85.72 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
++..+..|.....+.|++++|..+++...+ +.|+.. ....++..+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355555566666666666666666666665 455543 555555566666666666666666654 333345555556
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 475 VDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
..++...|++++|..+|+++ ...|+ ...+..+..++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66666666666666666665 22333 4455555566666666666666666666654
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.65 E-value=3.5e-07 Score=73.03 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
+......+...+...|++++|.++|+-+ ...| +...|..+...+...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455666777888999999999999988 5566 4667788888899999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 046956 545 ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~ 564 (574)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887644
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=1.2e-05 Score=83.31 Aligned_cols=239 Identities=9% Similarity=0.066 Sum_probs=143.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--R-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 338 (574)
.+...+..|+..|...+++++|.++.+...+ | ....|-.+...+.+.++.+++..+ .+ +.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 4556677777777777777777777765443 2 233444444466666665555444 22 22
Q ss_pred HHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHH
Q 046956 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 415 (574)
......++.....+...+...+. ...++..++.+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGE---NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22222333333333333333221 111566777777777777777777777663 3566777777777777 7777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046956 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (574)
|..++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~ 218 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------RE 218 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hc
Confidence 77777776652 4555567777777777775 2223333333222222111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 496 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
..--..++.-+...|...+++++++.+++.+++.+|.|..+...++.+|. +.|.+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 12223445555577788889999999999999999999999999998877 55555
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.4e-05 Score=68.23 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=103.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RDVV-SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
+|..+.-+...+|+.+.|..+++.+.. |+.. +-..-...+-..|++++|+++|+.+++.. +.|.+++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 455555555566666666666665542 2111 11111122334577778888888777754 3344566655555556
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---cCCHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKL---YSDIELG 519 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~---~~~~~~a 519 (574)
.|...+|++-+....+ .+..|.+.|..+...|...|++++|.-.++++ -.+|. +..+..+...+.- ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6766777777777776 66777788888888888888888888777777 34554 3333444433322 3356778
Q ss_pred HHHHHHHHhhCCCCchhHHH
Q 046956 520 ELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~ 539 (574)
.++|.++++++|.+...++-
T Consensus 211 rkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHhChHhHHHHHH
Confidence 88888888888865554443
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00054 Score=65.24 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=88.2
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 142 (574)
+-|...|+.|+ +-+... ..++.++.++++. +-.+..|..-|..-.+.++++.+..+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~li-re~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLI-REAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHH-HHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67889999999 766555 8999999999986 335678999999999999999999999998776 3456677776
Q ss_pred HHHHhcc-CCcHH----HHHHHHHH-HHhCCCCCc-chHHHHHHHH---------HcCCChHHHHHHHccCCC
Q 046956 143 IKACSHV-LSVRE----GTAIHAAV-IRWGVDEDV-FVGTSLIDLY---------GKRKEISCARKVFDEMPE 199 (574)
Q Consensus 143 l~~~~~~-~~~~~----a~~~~~~~-~~~g~~~~~-~~~~~li~~~---------~~~g~~~~A~~~~~~~~~ 199 (574)
|.-..+. +.... -.+.|+.. .+.|+++-. ..|+..+..+ ..+.+++...++++++..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6654322 23222 22334433 344554433 3455555432 334466777888888764
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=1.1e-05 Score=82.76 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RD-VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~ 443 (574)
.+..|+.+....|.+++|..+++.+.+ || ...+..++..+.+.+++++|+..+++.... .|+.. ....+..++.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH
Confidence 666677777777777777777777663 43 345566667777777777777777777763 45443 5555666667
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++.
T Consensus 166 ~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 166 EIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777775 33334566667777777777777777777766
No 126
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=1e-05 Score=75.27 Aligned_cols=194 Identities=9% Similarity=0.049 Sum_probs=142.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHG-HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
++..+-..+...++.++|....+++.+ | +..+|+.....+...| ++++++..++++.+.. +.+..+|......+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 344444555667788888888888774 3 3446766666667777 6799999999999853 233346665555555
Q ss_pred ccCc--HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC-
Q 046956 444 HVGL--VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLY---SD- 515 (574)
Q Consensus 444 ~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~- 515 (574)
+.|. .+++..+++++.+ .-+-+..+|+....++...|+++++++.++++ ...| +...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 5665 3678899988886 45567889999999999999999999999998 4344 567787777665544 22
Q ss_pred ---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc----CCchHHHHHHHHHHhCC
Q 046956 516 ---IELGELVANRLFELEPQNAGSYVLLSNIYATA----DRWLDVCLVRSKMKERG 564 (574)
Q Consensus 516 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 564 (574)
.+.++.+..++++.+|+|..+|..+..++... ++..+|.+.+.+..+.+
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 35788888899999999999999999999883 45567888887766543
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=1.1e-06 Score=71.49 Aligned_cols=100 Identities=7% Similarity=0.031 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
....+...+...|++++|.+.++.+.. ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344444555555666666666665554 22334455555555555555555555555554 2233 2334444445555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch
Q 046956 512 LYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
..|++++|...++++++..|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HcCCHHHHHHHHHHHHHhccccch
Confidence 555555555555555555555444
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2.6e-06 Score=83.29 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=156.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
.-..+...+...|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -+|++..|..+.+.....--
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 56678899999999999999999864 788889999999999999999998887 47889999999998888888
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
+++|.++.+..... .-..+.....+.++++++.+.|+.. ..+| -..+|..+.-+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 89999888776542 2333444455689999999999865 5555 456888888888999999999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+.++|++...|+++..+|.+.|+..+|...+++..+-+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999998876
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=7.4e-08 Score=55.66 Aligned_cols=32 Identities=41% Similarity=0.557 Sum_probs=20.7
Q ss_pred CCCCCcchHHHHHHHHHcCCChHHHHHHHccC
Q 046956 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197 (574)
Q Consensus 166 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (574)
|++||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=5.2e-06 Score=74.92 Aligned_cols=184 Identities=13% Similarity=-0.004 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC-hhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-hh---H
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-VV---S 399 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 399 (574)
......+......+...|+++.|...++.+.+..+... ....+..++..+.+.|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34566778888889999999999999999988765432 222677889999999999999999999873 32 22 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHH
Q 046956 400 YCSMIKGLSIH--------GHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470 (574)
Q Consensus 400 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 470 (574)
+..+..++... |++++|.+.++++... .|+.. .+..+..... . .. ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~-~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RN-RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HH-HHH--------HH
Confidence 55566666654 7789999999999884 55543 3322221100 0 00 000 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PV---EP-HASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
...+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999988887 22 23 245777888999999999999998888776655
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.1e-05 Score=68.75 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
.|..++-+....|+.+.|...++++... + |... .-..-..-+...|++++|.++|+...+ ..+.|..++-.-+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 3445555666789999999999998875 4 5443 333333345667999999999999998 446666777766777
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC---CchH
Q 046956 478 LGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD---RWLD 552 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 552 (574)
.-..|+.-+|++-+... .+-.|...|..+...|...|+++.|.-.+++++-+.|.++..+..+++++.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888877665 456789999999999999999999999999999999999999999999988776 5667
Q ss_pred HHHHHHHHHhCCC
Q 046956 553 VCLVRSKMKERGL 565 (574)
Q Consensus 553 a~~~~~~~~~~~~ 565 (574)
+++++.+..+.+.
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877665
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.5e-05 Score=65.72 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV-KIFSDMCSKNVQPDEFILVSLMSACSQVG 344 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 344 (574)
.-.-+-+.|...|++.....-......+.......+......-++.+..+ ++.+.+.......+......-...|.+.|
T Consensus 43 ~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 33344455555565544433333333233333333333333334433333 34444444433434344444445677778
Q ss_pred CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHH----cCChHHHHHH
Q 046956 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD-VVSYCSMIKGLSI----HGHGRQAVSL 419 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~~~~~~a~~~ 419 (574)
++++|.+...... ... ....=+..+.+..+.+-|...++.|.+-| -.+.+.|..++.+ .+...+|.-+
T Consensus 123 ~~deAl~~~~~~~----~lE---~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyi 195 (299)
T KOG3081|consen 123 DFDEALKALHLGE----NLE---AAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYI 195 (299)
T ss_pred ChHHHHHHHhccc----hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 8887777665421 111 33444566777888889999998888643 4566666666654 3568899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHH-HHHHhC
Q 046956 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY-ELLNSM 494 (574)
Q Consensus 420 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 494 (574)
|++|.++ ..|+..+.+....++...|++++|..+++.+.. ....++.+...++-+-...|...++. +.+..+
T Consensus 196 feE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 196 FEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 9999876 589999999999999999999999999999997 45556777777777777777665543 344444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=1.7e-05 Score=74.32 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=53.9
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 519 (574)
+...|.+++|+..++.+.. ..+.|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+..+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3344555555555555554 33333444444455555555555555555554 33343 23333444555555555555
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
+.+++.....+|+++..|..|+..|...|+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 55555555555555555555555554444433
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=6e-06 Score=67.10 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=85.4
Q ss_pred HHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 454 FFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 454 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.++++.. ..| +......++..+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445543 333 3455667778888899999999988887 4345 45667777788888899999999999998999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|+++..+..++.+|...|++++|...+++..+.+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999988877654
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=4.2e-06 Score=79.27 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 512 (574)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345555666678888888888888764 244 4445777777788888888888776 3344 55556666678899
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.++++.|+.+.+++.+..|++...|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998775
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=7.5e-05 Score=70.17 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=107.5
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC
Q 046956 371 ALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVG 446 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g 446 (574)
.....+...|++++|+..++.+. . .|+..+......+...++.++|.+.++++.. ..|+. .....+..++.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 34444556677888888887765 2 3556666777888888888888888888887 46663 46667778888888
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
++.+|+.+++.... ..+-|+..|..|..+|...|+..+|.....+ .+...|+++.|+..+..+
T Consensus 389 ~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHH
Confidence 88888888888876 6667788888888888888888777665433 456678888888888888
Q ss_pred HhhC-CCCc
Q 046956 527 FELE-PQNA 534 (574)
Q Consensus 527 ~~~~-p~~~ 534 (574)
.+.. ++.+
T Consensus 452 ~~~~~~~~~ 460 (484)
T COG4783 452 SQQVKLGFP 460 (484)
T ss_pred HHhccCCcH
Confidence 7764 4433
No 137
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.1e-07 Score=53.09 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=17.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0035 Score=63.64 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 046956 502 AWGALLGACKLYSDI---ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (574)
+.+.++..+.+.+|. -+|+-+++..+...|.|+..-..|+.+|.-.|-...|.+.++.+.-++|..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 445666778887764 5788888888899999999999999999999999999999998877777554
No 139
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.35 E-value=0.0025 Score=59.61 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHhCCCCC----CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 489 ELLNSMPVEP----HASAWGALLG--ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 489 ~~~~~~~~~p----~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+++.++.| +...-+.+.. .+..+|++.++.-.-..+.+..| ++.+|..+|-++....+|++|..++..+..
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3344444443 3445566653 35789999999998888889999 799999999999999999999999987654
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=6e-06 Score=72.49 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=42.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHL 484 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 484 (574)
+.+.+++.+|+..|.+.++ +.|+ .+-|..-..+|.+.|.++.|++-.+..+. +.|+ ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 3344455555555555554 2332 23334444445555555555554444442 1222 34444455555555555
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 046956 485 KSAYELLNSM-PVEPHASAW 503 (574)
Q Consensus 485 ~~A~~~~~~~-~~~p~~~~~ 503 (574)
++|++.|++. .+.|+..+|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 5555554444 444444444
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=6.2e-05 Score=78.23 Aligned_cols=210 Identities=12% Similarity=0.062 Sum_probs=152.2
Q ss_pred CCCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 046956 325 NVQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403 (574)
Q Consensus 325 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 403 (574)
+..| +...+..|+..+...++++++.++.+...+..+.... .|..++..+...++.+.+..+ .+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv-------------~~ 89 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL-------------NL 89 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh-------------hh
Confidence 3444 4567778888888889999999888877666554443 455555577777776555443 33
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (574)
+.......++.-...++..|.. ..-+...+..+..+|.+.|+.+++..+|+++.+. -+-|+.+.|.++..|... +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-h
Confidence 4444445555555555556665 2334458889999999999999999999999984 366789999999999998 9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH--------------------HHHHHH
Q 046956 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY--------------------VLLSNI 543 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~--------------------~~l~~~ 543 (574)
+++|.+++.++ +..+...+++..+..+++++++.+|++...+ .-|-..
T Consensus 165 L~KA~~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 99999998775 1225556688888888888888888876553 233366
Q ss_pred HHhcCCchHHHHHHHHHHhCCCc
Q 046956 544 YATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
|...++|+++..+++.+.+-..+
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc
Confidence 77788999999999999876544
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=2.8e-05 Score=73.73 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=105.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
+...|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++.+.++.. +-+......-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566777788888999999999999997777777778888888899999999999988742 3355566667777889999
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (574)
++.|+.+.+++.. -.+-+..+|..|+.+|...|++++|+-.++.++..
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999996 34445679999999999999999999999988633
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.30 E-value=2.4e-06 Score=59.83 Aligned_cols=66 Identities=23% Similarity=0.184 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CchHHHHHHHHHHhCC
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD-RWLDVCLVRSKMKERG 564 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 564 (574)
++..|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999999999999999999999999999 7999999999887643
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=4e-05 Score=62.85 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 474 MVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+...+...|++++|...|+.+ ...|+. .....+...+...|++++|+..++. ....+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 344445555555555555544 111221 1222233445555555555555544 1222333445555666666666
Q ss_pred CchHHHHHHHH
Q 046956 549 RWLDVCLVRSK 559 (574)
Q Consensus 549 ~~~~a~~~~~~ 559 (574)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666665554
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=1.4e-05 Score=63.27 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLG 508 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 508 (574)
+..++..+...|++++|...|+.+...+.-.+ ....+..++.++.+.|++++|.+.++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444555555555555555544211000 1223333444445555555555544443 11121 223333334
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
++...|++++|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 444444555555555554444444433
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=1.7e-06 Score=63.23 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 481 TGHLKSAYELLNSM-PVEP---HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 2222 334455566777777777777777777 666666667777777777788888887777
Q ss_pred HHH
Q 046956 557 RSK 559 (574)
Q Consensus 557 ~~~ 559 (574)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=1.7e-05 Score=59.75 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=75.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+..++..+...|++++|.+.++++ ...|+ ...+..+...+...+++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888776 33443 3556666778888899999999999999988888888899999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 046956 549 RWLDVCLVRSKMKERG 564 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~ 564 (574)
++++|...+.+..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999988876544
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.01 Score=60.48 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=125.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 046956 56 VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132 (574)
Q Consensus 56 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 132 (574)
+-..+.+.+-.+...++.++. ..+.|+.++|..+++... ..|..+...+-..|...|+.++|..+|++..+.
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLs---l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-- 106 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALS---LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-- 106 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHH---HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 344455555555555555555 568899999999888774 346778888889999999999999999998776
Q ss_pred CCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC----------hHHHHHHHccCCCCC-
Q 046956 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE----------ISCARKVFDEMPERN- 201 (574)
Q Consensus 133 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~- 201 (574)
.|+......+..++.+.+++.+-.++--++.+. ++-....+-++++.....-. ..-|.+.++.+.+.+
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g 185 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG 185 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC
Confidence 567777778888888888877666555555543 45556666666666654321 234555666665533
Q ss_pred h-h---hHHHHHHHHHhcCChHHHHHHHhh-cC----CCCcchHHHHHHHHHccCChHHHHHHHh
Q 046956 202 V-V---SWTAMIVGYASVGDLVEAKTVFDL-MP----ERSNVSWNALIGGLVKIGDLRSARQLFD 257 (574)
Q Consensus 202 ~-~---~~~~li~~~~~~g~~~~a~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (574)
. . -.......+-..|++++|.+++.. .. ..+...-+.-+..+...+++.+..++..
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 1 1 111223344567888888888832 21 2233333445566666777766655555
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=0.00015 Score=59.46 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc--HHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE---VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS--PEHYAC 473 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 473 (574)
.|..++..+ ..++...+...++.+.... +.+. .....+...+...|++++|...|+.+... ...|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344455555 3778888888888888753 2231 23444566788889999999999998875 32222 234455
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
+...+...|++++|+..++.....+ ....+......+...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7788888999999999998764333 34445555688899999999999988763
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=4.5e-06 Score=57.58 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 346678899999999999999999999999999999999999999999999998876543
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.9e-05 Score=67.97 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=86.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL---YSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.-+-|...|..|...|...|+.+.|...|.+. ...| ++..+..+..++.. ..+..++..+++++++++|.++.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34556788888888888888888888888877 3444 34455555544432 3356788999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCcc
Q 046956 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572 (574)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s 572 (574)
..|+..++..|++++|...|+.|.+.....+|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999998887777654
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=3.5e-05 Score=60.93 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLL 540 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 540 (574)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|++++|...+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566777788888888888888877 22333 2345556678888888888888888888887775 5568888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 541 SNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.++...|++++|...++++.+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888888888888888888877654
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.2e-06 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 136 (574)
+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888877763
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00033 Score=56.93 Aligned_cols=135 Identities=7% Similarity=0.041 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHH
Q 046956 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---ASAW 503 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~ 503 (574)
..|+...-..|..+....|++.+|...|++...- -+.-|......+.++....+++.+|...++++ ...|. +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888899999999999999998872 44566778888888899999999999988887 22222 2233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..+...+...|.++.|+..|+.++...|+ +......+..+.++|+.+++..-+..+.+.-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34557888899999999999999988887 6677777888899998888877665554433
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.09 E-value=1.9e-05 Score=75.27 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=91.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 515 (574)
-...+...|++++|+..|+++++ ..+.+...|..+..+|.+.|++++|+..++++ ...| +...+..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34567788999999999999997 44556788889999999999999999999988 5556 46677778899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
+++|+..++++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888877664444
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7.4e-06 Score=47.77 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 046956 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134 (574)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 134 (574)
.+|+.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777766665
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=0.0001 Score=70.37 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=81.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
....+...|++++|+..|+++++. .|+ ...|..+..+|.+.|++++|+..+++++. ..+.+...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 345667789999999999999984 454 55888888899999999999999999986 3444677888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 046956 482 GHLKSAYELLNSM-PVEPHASAWGALL 507 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 507 (574)
|++++|+..|+++ ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999887 5666655554444
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=6.9e-05 Score=63.58 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
.+..++..+...|++++|...|+++ ...|+ ...+..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555556666666655554 11121 234555566667777777777777777777777777777777777
Q ss_pred HhcCC--------------chHHHHHHHHHHhCC
Q 046956 545 ATADR--------------WLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~--------------~~~a~~~~~~~~~~~ 564 (574)
...|+ +++|.+.+++..+.+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 76665 455555555555433
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.00022 Score=71.19 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=96.8
Q ss_pred CCChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 046956 394 NRDVVSYCSMIKGLSI--H---GHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHV--------GLVEDGWRFFEAMQ 459 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 459 (574)
..+...|...+++... . ++.+.|..+|++.++ ..|+.. .+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777766443 2 236789999999998 567753 555544433221 12334444444443
Q ss_pred hhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.....+.++..|..+.-.....|++++|...++++ ..+|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32124445677877777777789999999999888 56778778888888899999999999999999999998875
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00017 Score=66.24 Aligned_cols=268 Identities=11% Similarity=0.034 Sum_probs=148.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 046956 270 MIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGN 345 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 345 (574)
....+.+..++..|+..+....+ .+..-|..-+..+...|++++|+--.+.-.+. +|. .......-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 44556666777777777665443 34556666666777777777776655554432 221 1233333333333444
Q ss_pred cchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CChhHHHHHH-HHHHHcCChHHHHHH
Q 046956 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RDVVSYCSMI-KGLSIHGHGRQAVSL 419 (574)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li-~~~~~~~~~~~a~~~ 419 (574)
..+|...++.-. .+ ....|...++.+.. |....|..+- .++...|++++|...
T Consensus 133 ~i~A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 434433333100 00 11112222222221 2223333332 344566777777766
Q ss_pred HHHHHHCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHhhcCCCCcHHH-------------HHHHHHHHhhcCCH
Q 046956 420 FDRMLSEGLTPDEVAFTIVLT--ACSHVGLVEDGWRFFEAMQNVYAIVPSPEH-------------YACMVDLLGRTGHL 484 (574)
Q Consensus 420 ~~~m~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~l~~~~~~~g~~ 484 (574)
--...+. .++. .+..+++ ++...++.+.|...|++.++ +.|+... +..=.+-..+.|++
T Consensus 192 a~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 192 AIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 6655552 2221 2222222 34456677777777777663 2333211 11122334577888
Q ss_pred HHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 046956 485 KSAYELLNSM-PVEP-----HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 485 ~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.+|.+.+.+. .+.| +...|........+.|+.++|+.-.+++++++|....+|..-+.++...++|++|.+.++
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776 4333 444555555666778888888888888888888888888888888888888888888887
Q ss_pred HHHhCCCc
Q 046956 559 KMKERGLR 566 (574)
Q Consensus 559 ~~~~~~~~ 566 (574)
+..+....
T Consensus 346 ~a~q~~~s 353 (486)
T KOG0550|consen 346 KAMQLEKD 353 (486)
T ss_pred HHHhhccc
Confidence 77655433
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.01 E-value=7.4e-05 Score=68.33 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAM---QNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-------PV-EPHAS 501 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 501 (574)
.|..|.+.|.-.|+++.|+...+.- .+.+|... ....+..+..+++-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666666667777776554422 12223322 2355666777777777777777776553 11 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFEL------EPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
...++..+|.-..+++.|+.++.+=+.+ ......++..|+.+|...|..++|..+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445666666666777777766655443 1234456677777777777777776665543
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=9.5e-06 Score=56.57 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678889999999999999999999999999999999999999998887776554
No 163
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.2e-05 Score=47.20 Aligned_cols=33 Identities=39% Similarity=0.777 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 431 (574)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=2.9e-05 Score=68.29 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=96.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 515 (574)
=..-..+.+++.+|+..|.++++ -.+-|..-|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 34557788999999999999996 45556777888899999999999999998887 67775 5689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
+++|++.|+++++++|++......|-.+-...+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998888888777666655
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.99 E-value=9.2e-05 Score=62.61 Aligned_cols=92 Identities=8% Similarity=-0.175 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
...|..++..+...|++++|...|+++ ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777788888888887776 22222 3467778888999999999999999999999998888888888
Q ss_pred HHH-------hcCCchHHHHHHHH
Q 046956 543 IYA-------TADRWLDVCLVRSK 559 (574)
Q Consensus 543 ~~~-------~~g~~~~a~~~~~~ 559 (574)
++. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 78887755555543
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.5e-05 Score=46.45 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046956 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328 (574)
Q Consensus 296 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 328 (574)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.94 E-value=0.00037 Score=64.13 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467888888888888999999999998543 3344556555555333 5777779999999998 56667788888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 477 LLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|.+...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987 22333 3489999988899999999999999999988875443
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.94 E-value=3.4e-05 Score=54.67 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..|.+.++++.|++.++++++.+|+++..+...+.++...|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678889999999999999999999999999999999999999999999998887665
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00015 Score=54.35 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 046956 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIE 517 (574)
Q Consensus 440 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 517 (574)
..+...|++++|...++.+.+ ..+.+...+..++..+...|++++|.+.++.. ...| +...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444443 11222233444444444445555555544443 1122 2234444445555555555
Q ss_pred HHHHHHHHHHhhCC
Q 046956 518 LGELVANRLFELEP 531 (574)
Q Consensus 518 ~a~~~~~~~~~~~p 531 (574)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555555444
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.89 E-value=0.00017 Score=58.23 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
.....-+...|++++|..+|+-+ ...| +..-|..+...+...+++++|+..|..+..+.++||...+..+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34455567889999999998877 2233 555677777888889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHh
Q 046956 550 WLDVCLVRSKMKE 562 (574)
Q Consensus 550 ~~~a~~~~~~~~~ 562 (574)
.++|...|...++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887776
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00063 Score=57.73 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 473 (574)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...++++.+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344667777777788888888888888776432222 246777777788888888888888887762 3334556666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
++.++...|+...+..-++.. ...+++|.+.++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777666555433321 123678889999999988887 4444444554443
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.87 E-value=7.1e-05 Score=51.50 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 474 MVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
++..+...|++++|.+.|+++ ...|+ ...+..+..++...|++++|+..++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 466778888889998888887 55564 55677777888999999999999999999999875
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=6.1e-05 Score=55.01 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=40.9
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 487 (574)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ . ...+ +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666653211 1223344456666666666666666665 2 1112 223333445666666666666
Q ss_pred HHHHHh
Q 046956 488 YELLNS 493 (574)
Q Consensus 488 ~~~~~~ 493 (574)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.82 E-value=0.00081 Score=67.18 Aligned_cols=135 Identities=15% Similarity=0.061 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 046956 427 GLTPDEVAFTIVLTACSH--V---GLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRT--------GHLKSAYELLN 492 (574)
Q Consensus 427 g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 492 (574)
+.+.+...|...+.+... . +....|..+|+++.+. .|+ ...|..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 346677788888887443 2 3477899999999963 455 45555554444322 22344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 493 SM----PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 493 ~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+. ....++..+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++...-+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1233456677676666678999999999999999999 588999999999999999999999999887664
No 175
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.78 E-value=0.031 Score=51.53 Aligned_cols=272 Identities=19% Similarity=0.215 Sum_probs=173.7
Q ss_pred cCChHHHHHHHhhC---CCCCHhHHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCcchH
Q 046956 277 VGDMTSARSLFEAA---PDRDVVAWSALISG--YAQNGQPDEAVKIFSDMCSKNVQPDEFI--LVSLMSACSQVGNLDLS 349 (574)
Q Consensus 277 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a 349 (574)
.|+-..|.+.-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|... |.... ...|...-.+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555554332 23344444334333 33468888888888888752 32221 22233333567777888
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC-----CCChh--HHHHHHHHHH---HcCChHHHHHH
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-----NRDVV--SYCSMIKGLS---IHGHGRQAVSL 419 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~a~~~ 419 (574)
+++-+..-....... ......+...+..|+++.|+++++.-. ++++. .-..|+.+-. -..+...|...
T Consensus 174 r~yAe~Aa~~Ap~l~--WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAEKAPQLP--WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHhhccCCc--hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 887777665544433 257778888888899999999887654 34432 1222332221 12345666666
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 046956 420 FDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---- 494 (574)
Q Consensus 420 ~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 494 (574)
-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+... .-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta~--dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTAL--DRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcHH--HHHHHHHHHH
Confidence 666555 677765 4445567889999999999999999854 5666555433 3445565332 222222
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 046956 495 PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA-DRWLDVCLVRSKMKER 563 (574)
Q Consensus 495 ~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 563 (574)
..+|| ......+..+....|++..|..-.+.+....|. ..+|..|+++-... ||-.++...+.+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 23454 455566668888999999999999999999988 67888888887665 9999999998877653
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.035 Score=51.76 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=26.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHH
Q 046956 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 223 (574)
+|..+.......|+.+-|..+++.=+.+ ..-+-.+.+.|+.+.|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~-----~~qVplLL~m~e~e~AL~ 47 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRA-----SKQVPLLLKMGEDELALN 47 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCCh-----HHHHHHHhcCCchHHHHH
Confidence 3555666666778888887777653321 112344555566555543
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.0023 Score=54.06 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
...|..+...+...|++++|+..|++.......+. ..++..+...+...|++++|...++++... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666677777888888888877766422221 236667777777778888888887777752 23334445555
Q ss_pred HHHHh
Q 046956 475 VDLLG 479 (574)
Q Consensus 475 ~~~~~ 479 (574)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 178
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.74 E-value=2.4e-05 Score=45.12 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHH
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
.|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.7e-05 Score=43.59 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCC
Q 046956 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131 (574)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 131 (574)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 357777777777777777777777777665
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.74 E-value=0.0029 Score=50.97 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=63.9
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
...+...+...|++++|..+|+.+.. .+..-|-.|..++...|++++|+..|....... +-|+..+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 34455556667777777777776652 244566677777777777788887777777743 23445677777777777
Q ss_pred CcHHHHHHHHHHhHhhcC
Q 046956 446 GLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~ 463 (574)
|+.+.|.+.|+..+...+
T Consensus 117 G~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 117 DNVCYAIKALKAVVRICG 134 (157)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 777777777777776543
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0046 Score=57.19 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHHhCCCchHHHHHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDM 321 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m 321 (574)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 344455555555555555443
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.0014 Score=60.31 Aligned_cols=125 Identities=9% Similarity=0.047 Sum_probs=64.1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHH----HCCCC-CCHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---------RDVVSYCSMIKGLSIHGHGRQAVSLFDRML----SEGLT-PDEV 433 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~-p~~~ 433 (574)
.|..|.+.|.-.|+++.|+..-+.-.. .....+..+..+++-.|+++.|.+.|+... +.|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455556666666666666654432210 112345566666666777777777766533 22211 1123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhh----cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNV----YAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (574)
...+|.+.|.-..++++|+.++.+-... ....-....+..|..++...|..++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4455666666666666666666543321 0111123344455555555555555555443
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.00042 Score=62.49 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=39.3
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDI 516 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~ 516 (574)
.+.|++++|...|+.+.+.+.-.+ .+..+..++.+|...|++++|...|+.+ ...|+ ...+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554211000 0133444445555555555555555444 11111 22233333444444555
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 046956 517 ELGELVANRLFELEPQNA 534 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~ 534 (574)
+.|...|+++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 555555555555555443
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.67 E-value=0.042 Score=50.68 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=165.5
Q ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 297 AWSALISGYAQ--NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC--SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 297 ~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
.|..|-.++.. .|+-..|.++-.+..+. +..|..-...++.+- .-.|+.+.+.+-|+.|...... ... -...|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt-Rll-GLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPET-RLL-GLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH-HHH-hHHHH
Confidence 45555555544 56666776666554432 455666666666654 4579999999999999752111 111 12334
Q ss_pred HHHhHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh---
Q 046956 373 VDMNAKCGNMDRAAELFETMPN--RD-VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEV--AFTIVLTACS--- 443 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~--- 443 (574)
.-.-.+.|+.+.|..+-+..-. |. ...+...+...+..|+++.|+++.+.-.+.. +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 4444678999999888877653 32 3578889999999999999999999766532 455543 2333333211
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH-H
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPE-HYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELG-E 520 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a-~ 520 (574)
-..+...|...-.+.. ++.|+.. .--.-..++.+.|+..++-++++.+ +.+|.+..+.... ..+.|+.... .
T Consensus 241 ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHH
Confidence 1234455555444443 5566632 2334467899999999999999998 7778877664332 3355554322 2
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+-.+++..+.|++......++..-...|++..|..--+...
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 23344455689999999999999999999988776554443
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.011 Score=52.94 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=104.7
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCC--CCh-hH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPN--RDV-VS---YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTAC 442 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 442 (574)
..+..+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++.++. .|+. .-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 345555667888888888877763 322 11 234566777888888888888888874 3332 2333333322
Q ss_pred h--ccC---------------c---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 046956 443 S--HVG---------------L---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502 (574)
Q Consensus 443 ~--~~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 502 (574)
+ ..+ + ...|...|+.+++. . |+ ..-..+|.+.+..+...-- ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~-------------S~ya~~A~~rl~~l~~~la-~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PN-------------SQYTTDATKRLVFLKDRLA-KY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cC-------------ChhHHHHHHHHHHHHHHHH-HH
Confidence 2 111 1 23344555555542 2 22 2223344433333311100 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
-..+...|.+.|.+..|+.-++.+++..|+.+ .++..++.+|...|..++|..+.+.+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 11344678899999999999999999988765 5677888999999999999998876653
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.027 Score=52.35 Aligned_cols=262 Identities=16% Similarity=0.035 Sum_probs=137.2
Q ss_pred HHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHH
Q 046956 179 DLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSA 252 (574)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 252 (574)
..+.+..++..|+..+....+ .+..-|..-+..+...|++++|.--.+.-.+. ......-.-+++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 455566667777776665543 34445556666666677777776655444332 233344445555555555556
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCHhHHHHH-HHHHHhCCCchHHHHHHHHHHHCCC
Q 046956 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-----RDVVAWSAL-ISGYAQNGQPDEAVKIFSDMCSKNV 326 (574)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~ 326 (574)
.+.++.- ..+ ....++..++.+.. |.-..|..+ ..++.-.|+.++|.+.--..++..
T Consensus 137 ~~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld- 199 (486)
T KOG0550|consen 137 EEKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD- 199 (486)
T ss_pred HHHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-
Confidence 5555411 000 11112222222221 111223322 234555666766666555554432
Q ss_pred CCCHHHHHHHHH--HHhccCCcchHHHHHHHHHHhCCCCChhh----------HHHHHHHHhHhcCCHHHHHHHHhhCCC
Q 046956 327 QPDEFILVSLMS--ACSQVGNLDLSNWVDSYLSRSHMDLSRAH----------VIAALVDMNAKCGNMDRAAELFETMPN 394 (574)
Q Consensus 327 ~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (574)
+ ...+..+++ ++...++.+.+...+.+.++.++...... ....-++-..+.|++..|.+.|.+...
T Consensus 200 -~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 200 -A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred -c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 1 112222222 23345556666666666665554433221 112223445667778888887777663
Q ss_pred -------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 395 -------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 395 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
++...|.....+..+.|+..+|+.--++... +.|... .|..-..++...++|++|.+-++++.+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566666666777777777777776665 334332 4444455666677777777777777654
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=9.2e-05 Score=51.50 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS 501 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 501 (574)
..|++++|.++|+++.. ..+-+...+..++.+|.+.|++++|.++++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 34555555555555554 22334444555555555555555555555555 3334433
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.00079 Score=61.96 Aligned_cols=129 Identities=11% Similarity=0.073 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR-TGHLKSAYELLNSM--PVEPHASAWGALLGA 509 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 509 (574)
.+|..++....+.+..+.|..+|.++.+ ....+..+|...+..-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4688888889999999999999999985 333455667766666445 56677799999988 344567788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 510 CKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+...|+.+.|..+|++++..-|.+. .+|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999866644 58888999889999999999999988764
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.047 Score=50.94 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=79.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHH
Q 046956 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (574)
+.+..|.-+...|+...|.++..+..-||..-|...+.+++..++|++-..+... +.++..|-..+.+|.+.|...+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 4455566667778888888888888778888888888888888888887776554 45677888888888888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 046956 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287 (574)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (574)
......+ .+..-+..|.++|++.+|.+.-
T Consensus 257 ~~yI~k~------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 257 SKYIPKI------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHhC------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7777764 2245567777777777776653
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=9.5e-05 Score=41.85 Aligned_cols=30 Identities=33% Similarity=0.611 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 428 (574)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00022 Score=49.70 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYS-DIELGELVANRLFELEP 531 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 531 (574)
++..|..++..+...|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777778888888888888888776 44554 556777778888888 68899999999988887
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0015 Score=50.67 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCchHHHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQ---NAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
.+..++...|++++|+.++++.....|+ +......++.++...|+.++|...+
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344555555555555555555555454 3444444445555555555555544
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.52 E-value=0.00096 Score=49.64 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCCcchH
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVL--------SVREGTAIHAAVIRWGVDEDVFVG 174 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 174 (574)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677778999999999999999999 899999999999877543 244667889999999999999999
Q ss_pred HHHHHHHHc
Q 046956 175 TSLIDLYGK 183 (574)
Q Consensus 175 ~~li~~~~~ 183 (574)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.0053 Score=56.81 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C----CH
Q 046956 434 AFTIVLTACSHV-GLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSMP---VE-P----HA 500 (574)
Q Consensus 434 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-p----~~ 500 (574)
++..+...|... |++++|.+.|+++...+..... ..++..++..+.+.|++++|.++|++.. .+ + +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566677777 8888888888887764322222 3456677888889999999999988761 11 1 11
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-----hhHHHHHHHHHhcCCch
Q 046956 501 S-AWGALLGACKLYSDIELGELVANRLFELEPQNA-----GSYVLLSNIYATADRWL 551 (574)
Q Consensus 501 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~ 551 (574)
. .+...+-.+...||...|.+.+++....+|.-. .....|+.++ ..||.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e 251 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVE 251 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHH
Confidence 1 222233455677899999999999888877532 2344555543 344433
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.48 E-value=0.00026 Score=43.93 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.++..+...|...|++++|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778899999999999999999999999999999988875
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.01 Score=51.42 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc----CCCCcHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY----AIVPSPEHYACM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 474 (574)
+-+.++..+...|.+.-...++.+.++...+-++.....|++.-.+.|+.+.|..+|+...+.. +..-+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3355666666677777788888888876544556677777777888888888888888665431 222223333334
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 475 VDLLGRTGHLKSAYELLNSMP-VEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
...|.-++++.+|...+.++. .+| ++...+.-.-...-.|+...|++..+.+++..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 445666777777777777762 222 344444444444556777888888888887777643
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.45 E-value=0.024 Score=53.34 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNR-------DVVSYCSMIKGLSI---HGHGRQAVSLFDRMLSEGLTPDEVAFTI 437 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 437 (574)
+...++-.|-...+++...++++.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3444555566677777777777766642 11122223344445 6777888888777555555666677776
Q ss_pred HHHHHhc---------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHH----HHHHHH---HhC-------
Q 046956 438 VLTACSH---------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK----SAYELL---NSM------- 494 (574)
Q Consensus 438 l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~------- 494 (574)
+...|-. ....++|...|.+.-+ +.|+...=-.++..+...|... +..++- ..+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 6665421 1235667777766543 3344322223333343444321 222222 111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 495 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
....+...+.+++.++.-.||++.|.+.++++.++.|+.-
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1235677778888999999999999999999999987744
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.15 Score=50.81 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=117.4
Q ss_pred CCCcchHHHHHHHHHcCCChHHHHHHHccCCC-CCh------------hhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 046956 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNV------------VSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234 (574)
Q Consensus 168 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 234 (574)
.|.+..|..|.......-+++.|+..|-+... +.+ ..-.+-|.+| -|++++|.++|-.|.+.|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 46666777776666655566666666554433 111 1111122222 3777777777777665553
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC--CC---chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCC
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP--ER---NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 309 (574)
.+....+.|++-...+++..-. .. -...|+.+.+.+.....+++|.+.|...... ...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHH
Confidence 3445556667666666666210 11 1346677777777777777777766554321 12344444444
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
++++-..+.+.+ +-+....-.+...+.+.|--++|.+.+-+.. .-...+..|...++|.+|.++-
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----------~pkaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----------LPKAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----------CcHHHHHHHHHHHHHHHHHHHH
Confidence 444444333332 2233344444555555555555444332211 1122344555556666666665
Q ss_pred hhCCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 046956 390 ETMPNRDVVSYCS--------------MIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 390 ~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
+...-|.+.+.-+ -|..+.+.|++-+|-+++.+|.+
T Consensus 902 q~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 902 QRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 5554333322111 13344555666666666666654
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.43 E-value=0.11 Score=48.93 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
..+|...+....+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-.. .++.+..--+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 3456667777777777888888888888877 5566667777776554 4777788888887665 3433333334566
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 476 DLLGRTGHLKSAYELLNSM--PVEPH--ASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
..+.+.|+-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+..|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6777888888888888855 12222 4577777777777788887777777777777764
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0035 Score=56.59 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLL 540 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 540 (574)
..|..-...+.+.|++++|+..|+.+ ...|+. ..+.-+...|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34554444456678888888888777 333432 345556677888888888888888888877764 4566667
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 541 SNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.++...|++++|..+++++++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 7888888888888888888876543
No 201
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.43 E-value=0.15 Score=50.20 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=106.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..-+..-.+.|+.+.+.-+|+.+.-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-...+-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 4444555555666666666666665532 2235555555555557777777777666554333333222222223455
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHHhcC
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAY---ELLNSM-PVEPHASAWGALL-----GACKLYS 514 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~~~~ 514 (574)
.|+++.|..+++.+... . |+ ...-..-+....+.|+.+.+. +++... ..+-+......+. ..+...+
T Consensus 379 ~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred hccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 67888888888888874 3 44 233333455566778887777 444433 2222222222221 2345567
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+.+.|..++.++.+..|++...|..+.......+
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 8889999999999999998888888888776665
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0046 Score=48.01 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHh
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLG 479 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 479 (574)
+..++-..|+.++|+.+|++..+.|+.... ..+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666778888888888888888766553 3666777788888888888888888876421101 2223333445677
Q ss_pred hcCCHHHHHHHHHh
Q 046956 480 RTGHLKSAYELLNS 493 (574)
Q Consensus 480 ~~g~~~~A~~~~~~ 493 (574)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888876644
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.011 Score=52.80 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCC-HHHH
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG---HLKSAYELLNSM-PVEPH-ASAW 503 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~ 503 (574)
+-|...|..|...|...|+.+.|...|....+ -.++++..+..+..++.... ...++.++|+++ ..+|+ ....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44556999999999999999999999999987 45566677777777665432 567788999888 55564 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..+...+...|++.+|...++.+++..|.+..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 555688999999999999999999998765543
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.40 E-value=0.00085 Score=63.56 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS----AWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+...++.+..+|...|++++|+..|++. ..+|+.. +|.++..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566667777777777777777777664 5556532 3666667777777777777777777776
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0036 Score=46.71 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHhhcCCCCcHHHH
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPDEVAFTIVLTACSHVG--------LVEDGWRFFEAMQNVYAIVPSPEHY 471 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (574)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+..+.. .+-..+.+|+.+... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666677999999999999999999 899999999998866542 345678889999987 899999999
Q ss_pred HHHHHHHhh
Q 046956 472 ACMVDLLGR 480 (574)
Q Consensus 472 ~~l~~~~~~ 480 (574)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887754
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.21 Score=50.40 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC---ChHHHHHHHccCCC--CChhhHHHHHHHHHhcCC
Q 046956 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK---EISCARKVFDEMPE--RNVVSWTAMIVGYASVGD 217 (574)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~ 217 (574)
+.-+...+.+..|.++-..+-..-... ..+|.....-+.+.. +-+.+..+-+++.. ....+|..+.+.....|+
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 334444555555555554442111011 334444444444332 22223333333333 233445555555555555
Q ss_pred hHHHHHHHhh
Q 046956 218 LVEAKTVFDL 227 (574)
Q Consensus 218 ~~~a~~~~~~ 227 (574)
.+-|..+++.
T Consensus 523 ~~LA~kLle~ 532 (829)
T KOG2280|consen 523 FELARKLLEL 532 (829)
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.35 E-value=0.00042 Score=49.70 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFEL----EPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++..+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566667777888888888888877764 222 245677888888888888888888877653
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.33 E-value=0.00092 Score=47.17 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 475 VDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
...|.+.+++++|.++++.+ ...|+ ...|......+...|++++|.+.++++++..|+++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35677888888888888887 44554 455666778888999999999999999999998777655443
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.02 Score=56.20 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=48.0
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhH
Q 046956 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297 (574)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (574)
.+-+.++-+++...+..+...+..-+.+...+..|.++|..|. -...++.++...+++++|..+-++.++--...
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-----D~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-----DLKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-----cHHHHhhheeecccchHhHhhhhhCccccccc
Confidence 3344444444444444444444444455555555555555441 12234555555666666666665555422222
Q ss_pred HHHHHHH-------------HHhCCCchHHHHHHHHHH
Q 046956 298 WSALISG-------------YAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 298 ~~~li~~-------------~~~~~~~~~A~~~~~~m~ 322 (574)
|....+. |.+.|+-.+|..+++++.
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3333333 444555555555555554
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0053 Score=51.99 Aligned_cols=98 Identities=20% Similarity=0.334 Sum_probs=78.5
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046956 386 AELFETM--PNRDVVSYCSMIKGLSI-----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG------------ 446 (574)
Q Consensus 386 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 446 (574)
.+.|+.. ...+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34667777778877764 4778888888999999999999999999999876532
Q ss_pred ----cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 447 ----LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 447 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
+.+-|++++++|... |+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 456789999999986 9999999999999999887753
No 211
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0041 Score=57.68 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PV-EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
.++..++.++.+.+++.+|++...+. .. .+|...+..-..++...|+++.|+..|++++++.|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45777888999999999999988877 33 34677777788999999999999999999999999999999999888777
Q ss_pred cCCchHH-HHHHHHHHhC
Q 046956 547 ADRWLDV-CLVRSKMKER 563 (574)
Q Consensus 547 ~g~~~~a-~~~~~~~~~~ 563 (574)
..++.+. .+.|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666554 7888888654
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.13 Score=46.22 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI---LVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 300 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
.....+...|++++|.+.|+++...-..+ ... ...+..++.+.++.+.|...++...+..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34444555666666666666665542111 111 123344555566666666666655554443
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.20 E-value=0.038 Score=48.24 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=88.3
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPN--RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTAC 442 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 442 (574)
..+..+...|++.+|.+.|+.+.. |+ ....-.++.++.+.|++++|...+++.++. -|+. ..+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 344445555666666666666552 21 124445566677777777777777777663 2332 1222222111
Q ss_pred h-------------ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046956 443 S-------------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509 (574)
Q Consensus 443 ~-------------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 509 (574)
+ ..+...+|...|+.+++ -|=......+|.+.+..+...- ...-..+...
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1 11122334444444443 3333334444444443331000 0111124477
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCchHHH
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAG---SYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 554 (574)
|.+.|.+..|..-++.+++..|+++. +...++..|.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999999999998765 5677888999999988544
No 214
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0062 Score=58.46 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC--CChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----CChh
Q 046956 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD--LSRAHVIAALVDMNAKCGNMDRAAELFETMPN----RDVV 398 (574)
Q Consensus 325 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 398 (574)
+.+.+...+..++..+....+++.+..++.+....... ..+. +..++++.|.+.|..+.+.++++.=.. ||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~-t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPS-THHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCc-cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34456666666666666666666666666665544211 1112 344566666666666666665554432 5555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
++|.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666666555555544444444444444433
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.16 E-value=0.043 Score=42.24 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=87.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
..-.|..++..++..+... ..+..-++.++.-....-+-+-..+.++..-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 3456788888888888776 234455666665555544555555555555442222 23344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
....+-.+. .+.......+..+..+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..++-++++++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 244556666788899999999999999988877778999999999999999999999999999999975
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.11 Score=42.90 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=35.3
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 046956 372 LVDMNAKCGNMDRAAELFETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSH 444 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 444 (574)
|.....+.|+..+|...|++... .|....-.+..+....+++..|...++++.+.. |. +.+...+...+..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHh
Confidence 44444444444444444444331 233333344444444444444444444444321 11 1122233334444
Q ss_pred cCcHHHHHHHHHHhH
Q 046956 445 VGLVEDGWRFFEAMQ 459 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~ 459 (574)
.|.+.+|...|+...
T Consensus 173 ~g~~a~Aesafe~a~ 187 (251)
T COG4700 173 QGKYADAESAFEVAI 187 (251)
T ss_pred cCCchhHHHHHHHHH
Confidence 444444444444444
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.12 E-value=0.014 Score=46.19 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHH
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM----PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG---SYVLLSNIY 544 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~ 544 (574)
.-+....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.++++|.++. ++...+-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3455566788888888888887 2222 2344556678889999999999999999999888765 455555556
Q ss_pred HhcCC---------------chHHHHHHHHHHhC
Q 046956 545 ATADR---------------WLDVCLVRSKMKER 563 (574)
Q Consensus 545 ~~~g~---------------~~~a~~~~~~~~~~ 563 (574)
..... ..+|...|++++++
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 66554 56677777776653
No 218
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.11 E-value=0.0058 Score=58.65 Aligned_cols=70 Identities=9% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchH
Q 046956 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174 (574)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 174 (574)
.++++.|...|..+.++.++..=...|+-||..+++.|+..+.+.|++..|.++...|...+.-.+..++
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 3444444555555555555444444444455555555555555555555554444444444433333333
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.37 Score=48.24 Aligned_cols=213 Identities=14% Similarity=0.058 Sum_probs=125.7
Q ss_pred ChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC-CCCC--------CcchHHHHHHHHhccCCcHHH
Q 046956 85 PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVP--------DKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 85 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a 155 (574)
.+++|.+..+.- |-+..|..+.......-.++-|...|-+...- |++. +...-.+ ..-+--|++++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHh
Confidence 355555555543 33445666655555554555555544433221 1110 0000001 112234778888
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--C---ChhhHHHHHHHHHhcCChHHHHHHHhhcCC
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--R---NVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 230 (574)
++++-++.++. ..|.++.+.||+-...++++.-.. . -..+|+.+...+.....|++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88777665543 346677777787777777765332 1 234677888888888888888887765432
Q ss_pred CCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCC
Q 046956 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310 (574)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 310 (574)
....+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.|-+...|.. -+..|...++
T Consensus 825 -----~e~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQ 893 (1189)
T KOG2041|consen 825 -----TENQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQ 893 (1189)
T ss_pred -----hHhHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHH
Confidence 123456666666777766666666 66667777788888888888888777766555432 2344566677
Q ss_pred chHHHHHHHHH
Q 046956 311 PDEAVKIFSDM 321 (574)
Q Consensus 311 ~~~A~~~~~~m 321 (574)
|.+|.++-+..
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 77777766553
No 220
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.0035 Score=53.09 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=47.0
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhc----------------cCCcHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSH----------------VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 180 (574)
.+=....+..|.+-|+.-|..+|+.||..+=+ ..+.+-|++++++|...|+-||..++..|++.
T Consensus 68 VeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 68 VEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 33334444555555555555555555554322 12356788999999999999999999999999
Q ss_pred HHcCCC
Q 046956 181 YGKRKE 186 (574)
Q Consensus 181 ~~~~g~ 186 (574)
+++.+.
T Consensus 148 FG~~s~ 153 (228)
T PF06239_consen 148 FGRKSH 153 (228)
T ss_pred hccccH
Confidence 987664
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.07 E-value=0.052 Score=53.42 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=20.8
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHH
Q 046956 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160 (574)
Q Consensus 119 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 160 (574)
+.+.-+++|++.|-.|+... +...|+-.|.+.+|.++|.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 33444555666665555432 2334555666666666654
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.021 Score=46.91 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
....++..+...|++++|+..+++++..+|-+-.++..++.+|...|+..+|.++|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455566778889999999999999999999999999999999999999999999998875
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.92 E-value=0.052 Score=47.37 Aligned_cols=140 Identities=11% Similarity=0.096 Sum_probs=71.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHh
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLT-PD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLG 479 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 479 (574)
....+...|++++|...|+++...-.. |- ......++.++.+.|+++.|...++..++.+.-.|.. ..+-.++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455566666666666666653111 11 1244455556666666666666666666543222221 11111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----------------HHHHHH
Q 046956 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS-----------------YVLLSN 542 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~ 542 (574)
.. ..... ......+...+|...++.+++..|+++.. -..++.
T Consensus 91 ~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 91 KQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00000 00122334567888888888888887543 235688
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 046956 543 IYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~ 563 (574)
.|.+.|.+..|..-++.+++.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999998864
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.078 Score=47.36 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=67.9
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA---LLGACKLYSDIE 517 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 517 (574)
.....|++.+|...|+.... ..+-+...-..++.+|...|+.+.|..++..++.+-....+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556777777777776665 2333345555667777777777777777777643332222222 122233333222
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+... +++-...+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 23334457777777777777777777777777666555544
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=96.80 E-value=0.085 Score=50.59 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 413 GRQAVSLFDRMLS-EGLTPDEV-AFTIVLTACSH---------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 413 ~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
.+.|+.+|.+... ..+.|+.. .|..+..++.. ..+..+|.++-++..+ --+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567778888772 12566643 55555444322 2345566777777775 4455677777777777888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH--HHHhcCCchHHHHHH
Q 046956 482 GHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN--IYATADRWLDVCLVR 557 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~ 557 (574)
|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++++++|....+-..-.+ +|+..+ .++|..++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8888888888887 56676 4455555566777888999999999998988876654443333 444444 46666655
Q ss_pred H
Q 046956 558 S 558 (574)
Q Consensus 558 ~ 558 (574)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.80 E-value=0.0025 Score=45.63 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-------P-VEPH-ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444444444444444444433 1 0111 334555556666777777777777766654
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.006 Score=56.61 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..++.++...+.+.+++..|++...++++++|+|..+++.-+.+|...|+++.|+..|+++.+..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 356677778889999999999999999999999999999999999999999999999999987554
No 228
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=1.7 Score=50.37 Aligned_cols=312 Identities=9% Similarity=0.057 Sum_probs=162.6
Q ss_pred HHHHHHHccCChHHHHHHHhc----CCCC--chhHHHHHHHHHHhcCChHHHHHHHhh-CCCCCHhHHHHHHHHHHhCCC
Q 046956 238 ALIGGLVKIGDLRSARQLFDE----MPER--NVVSYTTMIDGYAKVGDMTSARSLFEA-APDRDVVAWSALISGYAQNGQ 310 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 310 (574)
.+..+-.+.+.+..|...++. ..+. ....+..+...|+..+++|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 344455566667777776664 1111 123344455577777777777666653 333322 223445566788
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHh
Q 046956 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390 (574)
Q Consensus 311 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (574)
+..|...|+.+.+.+ ++...+++.++......|.++...-..+-......+.... .++.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~-~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDE-LNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHH-HHHHHHHHHhhhcchhhhhhhhh
Confidence 888888888887653 2235566666666666666666555444433322222222 34444455577778877777666
Q ss_pred hCCCCChhHHHHH--HHHHHHcCChH--HHHHHHHHHHHC--------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 046956 391 TMPNRDVVSYCSM--IKGLSIHGHGR--QAVSLFDRMLSE--------GLTPDE-VAFTIVLTACSHVGLVEDGWRFFEA 457 (574)
Q Consensus 391 ~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~m~~~--------g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 457 (574)
..+...|... +....+..+-+ .-.+..+.+.+. +..-+. ..|..++....-. +.+.-.+.+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~- 1617 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK- 1617 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh-
Confidence 4444455443 22222222111 111222222221 111111 1333333322211 1111111111
Q ss_pred hHhhcCCCCcH------HHHHHHHHHHhhcCCHHHHHHHHHhC----CCC-----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 458 MQNVYAIVPSP------EHYACMVDLLGRTGHLKSAYELLNSM----PVE-----PHASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 458 ~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
++.++. ..|..-+..-....+..+-+--+++. ..+ --..+|....+..+..|+++.|...
T Consensus 1618 -----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1618 -----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred -----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222221 12222221111111122222222221 112 1356788888888899999999988
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.-.+.+.. -+.++...++.+...|+...|..++++..+.+..
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88877776 4677888899999999999999999998876653
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.74 E-value=0.037 Score=52.97 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 046956 447 LVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGR---------TGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYS 514 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 514 (574)
..+.|..+|.++.......|+ ...|..+..++.. .....+|.+..++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888843345555 4555555544432 22345566666665 4444 5666666777778888
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++.|...|++++.++|+.+.++...++...-.|+.++|.+.+++..+-.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999998766554
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.041 Score=49.69 Aligned_cols=157 Identities=13% Similarity=0.024 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH----HHHHHHHhhcCCHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY----ACMVDLLGRTGHLK 485 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~ 485 (574)
.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.....++++.. ...++...| ..+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35555555566666553 344444555555566666666666666666554 333333222 23334445666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 486 SAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN----AGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 486 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
+|.+.-++. ++++ |.....++...+...|+..++.++..+-...-..+ ...|-..+-.+.+.+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666655 3333 44455555555666666666666555433221110 11233444455556666666666665
Q ss_pred HHhCCCccCC
Q 046956 560 MKERGLRKIP 569 (574)
Q Consensus 560 ~~~~~~~~~~ 569 (574)
=+-+..+++.
T Consensus 273 ei~k~l~k~D 282 (491)
T KOG2610|consen 273 EIWKRLEKDD 282 (491)
T ss_pred HHHHHhhccc
Confidence 4444444443
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.017 Score=50.98 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS---PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH-ASAWGAL 506 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l 506 (574)
|+.-+. +.+.|++..|.+.|...++ +.+-+ ...+.-|..++...|++++|..+|..+ +..|. +..+..+
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444333 3445566666666666665 33322 233444556666666666666555544 22222 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.......|+.++|...|+++++..|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 455555566666666666666666655443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.57 E-value=0.02 Score=54.64 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
...++.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..+|...|+.++|++.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44777777788888888888888888774 34542 34777788888888888888887776
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.56 E-value=0.32 Score=46.03 Aligned_cols=165 Identities=11% Similarity=-0.012 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHhhcCCCCcHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEG---LTPDEVAFTIVLTACSH---VGLVEDGWRFFEAMQNVYAIVPSPEHYA 472 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 472 (574)
+.-.++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|++++..+... ...+++++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 34456667999999999999999998731 11112222234445666 89999999999996654 7778889998
Q ss_pred HHHHHHhh---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHHhh----C
Q 046956 473 CMVDLLGR---------TGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSD-IE---LGELVA----NRLFEL----E 530 (574)
Q Consensus 473 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~~----~ 530 (574)
.+++.|-. ...+++|+..|.+. ..+|+...--++...+...|. .+ +..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88877642 23578899988887 666654333233323333332 22 222222 111111 2
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
-.+-+.+..++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3456677889999999999999999999998653
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=0.76 Score=43.69 Aligned_cols=411 Identities=12% Similarity=0.121 Sum_probs=216.0
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT---FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 142 (574)
+.|...|-.|+ +.|...+..++-+++++++..|-+ .+|...+++-...+++..+..+|.+...... +...|...
T Consensus 39 PtnI~S~fqLi-q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLI-QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHH-HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 56788999999 999999999999999999987654 4799889888888999999999999887744 45666666
Q ss_pred HHHHhccCCcHH------HHHHHHHHHH-hCCCCCcc-hHHHHHHHH---HcCC------ChHHHHHHHccCCC-C----
Q 046956 143 IKACSHVLSVRE------GTAIHAAVIR-WGVDEDVF-VGTSLIDLY---GKRK------EISCARKVFDEMPE-R---- 200 (574)
Q Consensus 143 l~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~~-~~~~li~~~---~~~g------~~~~A~~~~~~~~~-~---- 200 (574)
+.-..+....-+ ..+.++.... .+++|-.. .|+..+..+ -..| +++.....+.++.. |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 655444332211 1233333333 35555443 344433322 1223 34555566666653 1
Q ss_pred -----ChhhHHHHHHHHHh-------cCChHHHHHHHhhcCC-------CC---cchHHH-----------HHHHHHccC
Q 046956 201 -----NVVSWTAMIVGYAS-------VGDLVEAKTVFDLMPE-------RS---NVSWNA-----------LIGGLVKIG 247 (574)
Q Consensus 201 -----~~~~~~~li~~~~~-------~g~~~~a~~~~~~~~~-------~~---~~~~~~-----------l~~~~~~~~ 247 (574)
|-..|..=+..... ..-+..|...+++... .| ..+++. .|..-...|
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 11122111111110 1112334444443321 01 111111 111111000
Q ss_pred -----C-hHH-HHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHH
Q 046956 248 -----D-LRS-ARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317 (574)
Q Consensus 248 -----~-~~~-a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 317 (574)
+ ... ..-+++... .-.+..|----..+...++-+.|+...++...-.....--+...|--.++-+.+...
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~ 355 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGC 355 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhh
Confidence 0 000 000000000 011222222233344556666676666655432221111122233333343444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHh---ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC
Q 046956 318 FSDMCSKNVQPDEFILVSLMSACS---QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394 (574)
Q Consensus 318 ~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (574)
|+...+. + ..-|. .+.+=+ ..|+++...+++ .+.....+ . ++...++.-.+..-++.|..+|-++.+
T Consensus 356 fdk~~q~-L---~r~ys-~~~s~~~s~~D~N~e~~~Ell---~kr~~k~t-~-v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 356 FDKCTQD-L---KRKYS-MGESESASKVDNNFEYSKELL---LKRINKLT-F-VFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred HHHHHHH-H---HHHHh-hhhhhhhccccCCccccHHHH---HHHHhhhh-h-HHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4433221 0 00000 000000 012222111111 11111111 1 566677777788889999999988774
Q ss_pred -----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-
Q 046956 395 -----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF-TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS- 467 (574)
Q Consensus 395 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 467 (574)
+++..+++++.-++ .|+..-|..+|+--... -||...| ...+.-+...|+-..|..+|+..+. .+..+
T Consensus 426 ~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~--r~~~~q 500 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE--RLEKTQ 500 (660)
T ss_pred cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH--HHHHhh
Confidence 57788899988776 47788888888865542 4555433 4455667788999999999997766 34444
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 468 -PEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 468 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
...|..++.--..-|++..+..+=+++
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 577888888888888888777665555
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.50 E-value=0.57 Score=41.77 Aligned_cols=220 Identities=18% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHH
Q 046956 309 GQPDEAVKIFSDMCSKNVQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387 (574)
Q Consensus 309 ~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (574)
+....+...+.......... ....+......+...+....+...+.........+.....+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455555555554432211 23445555555555666665555555554321111111244555555555556666666
Q ss_pred HHhhCCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 388 LFETMPN--RDV-VSYCSMIK-GLSIHGHGRQAVSLFDRMLSEGLTP----DEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 388 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6655542 111 12222222 45556666666666666544 222 11233333333445556666666666555
Q ss_pred hhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 460 NVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 460 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
. ..+. ....+..+...+...|++++|...+... ...|+ ...+......+...++.+.+...+.+.++..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 2222 2444555555555555555555555554 22232 223333333333444555565555555555554
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=1.3 Score=45.73 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
++..+....+.+.+..+.+..+.. ++..|..++..+.+.+..+.-.+...+.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 455666777788888888777533 677787788888877766655555555444
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.42 E-value=0.042 Score=42.21 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=53.3
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH--ASAWGALLGACKLYS 514 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~ 514 (574)
+....|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +.+.. -..+..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45566777777777777665 44455666777777777777777776666554 11111 112333334566667
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 046956 515 DIELGELVANRLFELEPQ 532 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~ 532 (574)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777666666544
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.047 Score=48.28 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 486 (574)
|++..|...|...++.. +-+ ...+..|..++...|++++|..+|..+.+.+.-.|. ++.+-.|.....+.|+.++
T Consensus 155 gdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 155 GDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred CCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 44555555554444432 111 123344444444445555555555444443222222 2444444444445555555
Q ss_pred HHHHHHhC
Q 046956 487 AYELLNSM 494 (574)
Q Consensus 487 A~~~~~~~ 494 (574)
|...|+++
T Consensus 234 A~atl~qv 241 (262)
T COG1729 234 ACATLQQV 241 (262)
T ss_pred HHHHHHHH
Confidence 54444444
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.63 Score=40.86 Aligned_cols=129 Identities=7% Similarity=-0.038 Sum_probs=70.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--------PVEPHASAWGALL 507 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 507 (574)
+.++..+.-.|.+.-....+.+.++. .-+.++.....|++.-...|+.+.|..+|+.. +.+.+........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34444445555555556666666553 33444555555666666666666666666533 1111122222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..+.-++++..|.+.+.+.++.+|.++.+.+.-+-++.-.|+..+|.+.++.|++..+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3344555666666666666666666666666666566666666666666666655443
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.047 Score=49.27 Aligned_cols=116 Identities=8% Similarity=-0.028 Sum_probs=96.1
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHH---H-HHHHhcCCH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P-VEPHASAWGAL---L-GACKLYSDI 516 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l---~-~~~~~~~~~ 516 (574)
.-.|+..+|...++++.+ ..|.|...+.-.=+++.-.|+.+.-...++++ + -+++.+.+..+ . .++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346788888888999998 77888888887778899999999988888888 3 25665444333 2 456789999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
++|++..+++++++|.|..+...++.++...|+.+++.+.+.+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999987653
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.33 Score=42.10 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCchhHH
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSMP-------VEPHA-SAWGALLGACKLYSDIELGELVANRLFEL----EPQNAGSYV 538 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 538 (574)
+..+.+.+.+...+++|-..|.+-. .-++. ..+...+-.+....|+..|++.++...+. .|.+.....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666665554431 11221 12333334445556777777777765543 455666666
Q ss_pred HHHHHHHhcCCchHHHHHH
Q 046956 539 LLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~ 557 (574)
.|...| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666653 456666665554
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.61 Score=41.95 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.. .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34556788888888888887742 233456667788888888888888888876542 1111222223334555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 485 KSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLFELE--PQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 485 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
.+...+-.+.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...--.|..++...|.-+.+...+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555554456 55566667788888899999988888777763 456777888888888888555544333
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.13 Score=47.11 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCcchHH
Q 046956 305 YAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 305 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
+....+.++|+..+.+-..+- ...--.++..+..+.+..|..+++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 345566667766666554431 0011123444444455555444443
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.25 E-value=0.79 Score=40.82 Aligned_cols=195 Identities=21% Similarity=0.191 Sum_probs=124.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP-----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT-A 441 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-~ 441 (574)
........+...+++..+...+.... ......+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 56666777777777777777766653 2344456666666677777778888887777643222 122222222 5
Q ss_pred HhccCcHHHHHHHHHHhHhhcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAI--VPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH--ASAWGALLGACKLYSDI 516 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~ 516 (574)
+...|+++.+...+.+.... .. ......+......+...++.+++...+.+. ...++ ...+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 77778888888888877431 11 122344444445566777888888877776 33333 45566666777777778
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+.+...+..+....|.....+..++..+...|.++++...+.+.....
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888777766666666666666666777777777665543
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.25 E-value=0.39 Score=44.17 Aligned_cols=23 Identities=13% Similarity=-0.011 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHH
Q 046956 536 SYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
....++.+|...|..++-..-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ 355 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVV 355 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHH
Confidence 45667777777776665444433
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.14 Score=49.21 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQ--NAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
..+.+.|+.++|++.++++++..|. +..+...|+.++...+++.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344445555555555554444332 2334444444455555555554444443
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.21 E-value=0.31 Score=48.62 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=101.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHhHhhcCCCCcHHHH
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDE-----VAFTIVLTACS----HVGLVEDGWRFFEAMQNVYAIVPSPEHY 471 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (574)
.++....-.||-+.+++.+.+..+.+ +.-.. ..|...+..+. .....+.|.++++.+.+. . |+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCcHHH
Confidence 34444445567777777666655432 11111 12333333322 245678889999988863 3 454444
Q ss_pred H-HHHHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-HHHHHHH
Q 046956 472 A-CMVDLLGRTGHLKSAYELLNSMPV------EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS-YVLLSNI 543 (574)
Q Consensus 472 ~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~ 543 (574)
. .-.+.+...|++++|++.|+++-. +.....+..+...+....++++|...+.++.+.+.-+... ++..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 445677888999999999987521 1233455556677888899999999999999875544444 4456667
Q ss_pred HHhcCCc-------hHHHHHHHHHHh
Q 046956 544 YATADRW-------LDVCLVRSKMKE 562 (574)
Q Consensus 544 ~~~~g~~-------~~a~~~~~~~~~ 562 (574)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7888888 888888887754
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.14 E-value=0.21 Score=39.79 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhCCCCchh
Q 046956 516 IELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~ 536 (574)
...|...|+++++..|++..+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 568888999999999997654
No 249
>PRK15331 chaperone protein SicA; Provisional
Probab=96.12 E-value=0.15 Score=41.53 Aligned_cols=84 Identities=6% Similarity=-0.076 Sum_probs=41.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|..+... + .-|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34555666666555555432 112233444444455555666666655555432 1 12222333345555556666666
Q ss_pred HHHHHhC
Q 046956 488 YELLNSM 494 (574)
Q Consensus 488 ~~~~~~~ 494 (574)
.+.|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 6555554
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.09 E-value=0.021 Score=32.77 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777888888888888888887764
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.06 E-value=0.016 Score=33.37 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777888888888888888888888876
No 252
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.06 E-value=0.52 Score=40.13 Aligned_cols=161 Identities=16% Similarity=0.056 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
+.+||-+.--+...|+++.|.+.|+...+. .|.- .+...-.-++.-.|++.-|.+-+.+.-+...-.|-...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 457777777778888888888888888873 4432 2332223345556888888777666655312223233333332
Q ss_pred HHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhc
Q 046956 476 DLLGRTGHLKSAYELL-NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN-------AGSYVLLSNIYATA 547 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 547 (574)
...-++.+|..-+ ++.. ..|...|...+-.+. .|++. .+.+++++..-..++ ..+|+-|++.|...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334566666544 3332 233344443332221 12211 122333333332222 35788889999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 046956 548 DRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 548 g~~~~a~~~~~~~~~~~~ 565 (574)
|+.++|..+|+-.+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987776543
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.05 E-value=0.11 Score=40.80 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
..|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566667777777777777777777777777776666666666666554
No 254
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.026 Score=46.95 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=57.0
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSP-----EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACK 511 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 511 (574)
.+-+...|++++|..-|..++.. +++.. ..|..-..++.+.+.++.|++-..+. .+.|.. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34466677777777777777762 33321 23444445566666666666655544 444422 22222334566
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+...++.|+.-|+++++.+|....+....+.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 6666677777777777776665554444433
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.085 Score=43.22 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHY 471 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 471 (574)
+...++..+...|++++|..+.+++.... +-+...|..++.++...|+..+|.+.|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666677788888888888877742 33455788888888888888888887776643 23677776543
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.93 E-value=1.7 Score=41.64 Aligned_cols=443 Identities=13% Similarity=0.130 Sum_probs=196.7
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCC----c-hhHHHHHHHHHHhcCCChHHHHHHhhccCC-CChhhHHHHHHHH--HhC
Q 046956 43 LIKKCKLQTHLHQVHSHIIKKGLEQ----D-HSLVAHFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLLKGY--SQN 114 (574)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~g~~~----~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~ 114 (574)
+|+..+....+..++..+.+.--.. . ....+.++ ..|. .++++.....+....+ -....|-.+..++ .+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gril-nAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL-NAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH-HHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 3444555566666666666543211 1 12223344 4443 2344444444433321 1133455554433 567
Q ss_pred CCchHHHHHHHHhHhC--CCCC------------CcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCC----CCcchHHH
Q 046956 115 SRFIEVFTIFVRLIRE--EAVP------------DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD----EDVFVGTS 176 (574)
Q Consensus 115 g~~~~a~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 176 (574)
+++.+|++.+..-... +..| |...=+..+.++...|++.+++.+++++...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7777777666554433 2111 1111123345556777888887777777655333 66777777
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcc-----CChHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-----GDLRS 251 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 251 (574)
++-++++.=-. ++-+.+...=..-|..+|..|.+.=+.-++.. |++. -|.......++....-. .-+-.
T Consensus 173 ~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 173 AVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 66665542111 11111111111223334444433211111100 0000 01111111112111111 11112
Q ss_pred HHHHHhc-CCCCch-hHHHHHHHHHHhcCChHHHHHHHhhCC--------CCCHhHHHHHHHHHHhCCCchHHHHHHHHH
Q 046956 252 ARQLFDE-MPERNV-VSYTTMIDGYAKVGDMTSARSLFEAAP--------DRDVVAWSALISGYAQNGQPDEAVKIFSDM 321 (574)
Q Consensus 252 a~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 321 (574)
+.+.++. -..|+- .+...+..-+.+ +.+++..+.+.+. +.=+.++..++....+.++..+|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222221 112322 233333333333 3344433333222 123456777777778888888887777666
Q ss_pred HHCCCCCCHHHHHHHH-------HHHh-ccCC---cchHHHHHHHHHHhCCCCChhhHHHHHH---HHhHhcCC-HHHHH
Q 046956 322 CSKNVQPDEFILVSLM-------SACS-QVGN---LDLSNWVDSYLSRSHMDLSRAHVIAALV---DMNAKCGN-MDRAA 386 (574)
Q Consensus 322 ~~~~~~p~~~~~~~ll-------~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~ 386 (574)
... .|+...-..++ ...+ .-.+ ...-..+++.+...+++... ....|+ .-+.+.|. -++|.
T Consensus 325 ~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ--Lvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 325 KIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ--LVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred Hhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH--HHHHHHHHHHHHHhcCCccHHHH
Confidence 543 34333221111 1111 1111 11122333333333332222 222222 23444454 67777
Q ss_pred HHHhhCCC---CChhHHHHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhccCcHHH
Q 046956 387 ELFETMPN---RDVVSYCSMI----KGLSI---HGHGRQAVSLFDRMLSEGLTPDEV----AFTIVLTA--CSHVGLVED 450 (574)
Q Consensus 387 ~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~--~~~~g~~~~ 450 (574)
++++.+.+ -|..+-|.+. ..|.+ .....+-+.+-+-..+.|++|-.+ .-+.|.++ +...|++.+
T Consensus 401 nLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 401 NLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 77777663 3443333322 22221 122333444444445567666432 33334333 445677777
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 046956 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 504 (574)
+.-+-.-+. .+.|++.+|..++-++....++++|..++..++ |+...++
T Consensus 481 c~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 481 CYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 665544443 567788888888877888888888888888875 3444443
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.92 E-value=2 Score=42.61 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
...|...|.--...+++.....+|++.++
T Consensus 151 ~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 151 DPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 34455555555555555555555555554
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.81 E-value=1.2 Score=39.26 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=88.1
Q ss_pred HhHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc---
Q 046956 375 MNAKCGNMDRAAELFETMPNR------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSH--- 444 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~--- 444 (574)
.-.+.|++++|.+.|+.+... ...+--.++-++-+.++++.|+...++.... +-.||. -|...+.+.+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 334557777777777776631 1123344555666777777887777777663 222332 23333333221
Q ss_pred ----cCcHH---HHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC
Q 046956 445 ----VGLVE---DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW--GALLGACKLYSD 515 (574)
Q Consensus 445 ----~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~~ 515 (574)
..+.. .|..-|++++. ..|-+..+ .+|..-+..+. |.... ..+...|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~--ryPnS~Ya--------------~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQ--RYPNSRYA--------------PDAKARIVKLN---DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHH--HCCCCcch--------------hhHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 12222 33333444443 22211111 11111111110 11111 123366788888
Q ss_pred HHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 516 IELGELVANRLFELEPQNAG---SYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+..|..-++++++..|+... .+..+..+|...|-.++|...-+-+.
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888888888666544 55666777888888888877765553
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.67 E-value=0.45 Score=46.76 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=57.9
Q ss_pred HHHcCCChHHHHHHHc--cCC-CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHH
Q 046956 180 LYGKRKEISCARKVFD--EMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256 (574)
Q Consensus 180 ~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (574)
...-.|+++++.++.. ++. .-...-.+.++.-+-+.|..+.|+.+.+. + ..-.....+.|+++.|.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHH
Confidence 3344566666433332 111 01123355566666666666666665332 1 12233344555666665555
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 046956 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324 (574)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 324 (574)
..+ .+...|..|.+...+.|+++-|++.|.+..+ +..|+-.|.-.|+.++-.++.+.....
T Consensus 342 ~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 342 KEL--DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp CCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred Hhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 554 2444555555555555555555555555442 333444444455554444444444433
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=3 Score=42.56 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=36.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 518 (574)
+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-++.+. +.-|.-...+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHH
Confidence 333444455555554443332 24444444445555555555555555444421 2223334445555555555
Q ss_pred HHHHHH
Q 046956 519 GELVAN 524 (574)
Q Consensus 519 a~~~~~ 524 (574)
|.++.-
T Consensus 763 A~KYip 768 (829)
T KOG2280|consen 763 AKKYIP 768 (829)
T ss_pred Hhhhhh
Confidence 554443
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.48 E-value=0.15 Score=39.26 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=59.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH---HHHHHHHHHHhhc
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP---EHYACMVDLLGRT 481 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~ 481 (574)
-+....|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|+.-+++..+.-|-. .. ..|-.-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3566778888888888887773 23345678888888888888888888888877753333 22 2233333456677
Q ss_pred CCHHHHHHHHHhC
Q 046956 482 GHLKSAYELLNSM 494 (574)
Q Consensus 482 g~~~~A~~~~~~~ 494 (574)
|+.+.|..-|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 7888877777664
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=0.25 Score=49.34 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=103.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-----HHHHHHHHHHh----hcCCHHH
Q 046956 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-----EHYACMVDLLG----RTGHLKS 486 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~----~~g~~~~ 486 (574)
...+|.-++.. ++| .+..++....-.|+-+.+++.+.+..+..++.-.. -.|..++..+. .....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555553 344 34566777788899999999999887753343222 22333333333 2557889
Q ss_pred HHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 487 AYELLNSM-PVEPHASAWGALL-GACKLYSDIELGELVANRLFELE----PQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 487 A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
|.++++.+ ..-|+...|...- +.+...|+.++|++.+++++... .-..-.+..+++.+...++|++|.+.+.++
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 99999998 4568877776554 77889999999999999887532 223456788999999999999999999999
Q ss_pred HhCC
Q 046956 561 KERG 564 (574)
Q Consensus 561 ~~~~ 564 (574)
.+.+
T Consensus 332 ~~~s 335 (468)
T PF10300_consen 332 LKES 335 (468)
T ss_pred Hhcc
Confidence 8643
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.40 E-value=2.1 Score=41.61 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhCCCCch
Q 046956 518 LGELVANRLFELEPQNAG 535 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~ 535 (574)
.|.+...++.+.+|.-|.
T Consensus 364 ~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhCCCCch
Confidence 356777888888776543
No 264
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.37 E-value=4.2 Score=42.42 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=65.2
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 410 HGHGRQAVSLFDRMLSE-GLTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~-g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
..+.+.|..++.+.... ++.+... ....+.......+..+++...+...... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 35567888888876443 2333332 3334433333332255666666654432 1233444444555568888888
Q ss_pred HHHHHHhCCCC-CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 046956 487 AYELLNSMPVE-PHASAWGALL-GACKLYSDIELGELVANRLF 527 (574)
Q Consensus 487 A~~~~~~~~~~-p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~ 527 (574)
+...+..|+.. .+...|.... .++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888321 1222333333 56566788888888888864
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.36 E-value=5.1 Score=43.37 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=35.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 476 DLLGRTGHLKSAYELLNSMPVEPHASA--WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.+|..+|+|.+|+.+..++....+... -..|..-+...++.-+|-+++.+.... | ..-...|++...|++|
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~------~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P------EEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H------HHHHHHHhhHhHHHHH
Confidence 344445555555555444422222211 133445555555555555544443221 1 1223345666677777
Q ss_pred HHHHHHH
Q 046956 554 CLVRSKM 560 (574)
Q Consensus 554 ~~~~~~~ 560 (574)
.++....
T Consensus 1046 lrva~~~ 1052 (1265)
T KOG1920|consen 1046 LRVASKA 1052 (1265)
T ss_pred HHHHHhc
Confidence 7665443
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.30 E-value=0.23 Score=43.88 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred HHHHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------
Q 046956 383 DRAAELFETMP--NRDVVSYCSMIKGLSIH-----GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG--------- 446 (574)
Q Consensus 383 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--------- 446 (574)
-..+..|..+. +.|-.+|-.++..+..+ +..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33455666666 57778888888877654 567777788899999999999999999999876543
Q ss_pred -------cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 447 -------LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 447 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
+-.-++.++++|..- |+.||.++-..+++++++.|..
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 234588999999884 9999999999999999998864
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.10 E-value=0.14 Score=45.25 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=78.1
Q ss_pred HHHHHhhccC--CCChhhHHHHHHHHHhC-----CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccC----------
Q 046956 88 YSTAVFNRIV--NPNTFLWNTLLKGYSQN-----SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL---------- 150 (574)
Q Consensus 88 ~A~~~~~~~~--~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---------- 150 (574)
..+..|.... ..|-.+|-..+..|... +..+=-...++.|.+-|+.-|..+|+.||+.+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445555554 56667777777766543 344445556788888898889999999888654322
Q ss_pred ------CcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCh-HHHHHHHccCC
Q 046956 151 ------SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEI-SCARKVFDEMP 198 (574)
Q Consensus 151 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 198 (574)
.-+-+..++++|..+|+.||..+-..|++++++.|-. .+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345789999999999999999999999999988753 34444444443
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.5 Score=35.49 Aligned_cols=126 Identities=6% Similarity=-0.004 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 479 (574)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . .+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 3445566666667777777777777665 345556777777776543 2333344332 1 12222334566667
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLY-SDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
+.|.++++..++.+++. +...+..+... ++.+.|++++++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777642 22222223333 677777776664 345556666665443
No 269
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.04 E-value=0.57 Score=36.87 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH--------------hhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQ--------------NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---- 494 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 494 (574)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555555544443321 11134456666666666666666666666666554
Q ss_pred CCCCCHHHHHHHH
Q 046956 495 PVEPHASAWGALL 507 (574)
Q Consensus 495 ~~~p~~~~~~~l~ 507 (574)
+++-+...|..++
T Consensus 83 ~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 83 PIPIPKEFWRRLL 95 (126)
T ss_pred CCCCCHHHHHHHH
Confidence 3344455666666
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=2.4 Score=37.06 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=81.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE---GLT--PDEVAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~--p~~~~~~~l~~~~ 442 (574)
.++.-..+|..+|..+.|-..+++.-+ .....++++|+++|++.... +-+ .-...+......+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 566666777777777766655554321 22345677777777765431 100 0112345555566
Q ss_pred hccCcHHHHHHHHHHhHhh---cCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHh
Q 046956 443 SHVGLVEDGWRFFEAMQNV---YAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSM---PV--E-PHASAWGALLGACKL 512 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~~--~-p~~~~~~~l~~~~~~ 512 (574)
.+...+++|-..+.+-... +.--++. ..|-..|-.+.-..++..|.+.++.- +. . -+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 7777777766555433211 0111222 33445555666778899999998874 21 1 2456777777776 4
Q ss_pred cCCHHHHHHHHH
Q 046956 513 YSDIELGELVAN 524 (574)
Q Consensus 513 ~~~~~~a~~~~~ 524 (574)
.||.+++..++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677777766553
No 271
>PRK09687 putative lyase; Provisional
Probab=94.90 E-value=3.1 Score=38.33 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCc----hHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP----DEAVKIFSDMCSKNVQPDEFILVSL 336 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~l 336 (574)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .++..+-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 455555555555555555433333333333344555555556666666653 3455555555332 3444444444
Q ss_pred HHHHhc
Q 046956 337 MSACSQ 342 (574)
Q Consensus 337 l~~~~~ 342 (574)
+.++..
T Consensus 112 ~~aLG~ 117 (280)
T PRK09687 112 INATGH 117 (280)
T ss_pred HHHHhc
Confidence 444443
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.89 E-value=0.97 Score=44.52 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 411 (574)
....++.-+.+.|-.+.|.++-..- ..-.+...++|+++.|.++.++.. +...|..|......+|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Confidence 3455555555566555555542211 123344566778887777776655 4557888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 412 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.+... | -++....++.-.|+.++..+++
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHH
Confidence 88888877776433 445555566667776666666655543 1 1344444555667777777777
Q ss_pred HhCC
Q 046956 492 NSMP 495 (574)
Q Consensus 492 ~~~~ 495 (574)
.+.+
T Consensus 426 ~~~~ 429 (443)
T PF04053_consen 426 IETG 429 (443)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6654
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.55 E-value=4.7 Score=38.79 Aligned_cols=150 Identities=12% Similarity=-0.004 Sum_probs=82.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc--HH
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP---DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS--PE 469 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 469 (574)
....+|..++..+.+.|+++.|...+.++...+... .+.....-+......|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344577788888888888888888888877643111 2233444455566778888888888877762 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 470 HYACMVDLLGRTGHLKSAYEL-LNSMPVEPHASAWGALLGACKLY------SDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
....+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112222333333333 78889999999999999998888888887
Q ss_pred HHHhc
Q 046956 543 IYATA 547 (574)
Q Consensus 543 ~~~~~ 547 (574)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76544
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.47 E-value=0.098 Score=29.90 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556677777777777777777777664
No 275
>PRK09687 putative lyase; Provisional
Probab=94.35 E-value=4.2 Score=37.45 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 340 (574)
++|..+-...+.+.++.|+..-.-.+.+.+..++ .....+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4455555555555655555332222333333333 223445555555553 466666665543 23444444444433
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.32 E-value=0.088 Score=32.43 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|.++..++..|.+.|++++|.++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999998765
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.25 E-value=0.09 Score=30.65 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
++..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888743
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.24 E-value=0.46 Score=38.64 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHHHHHH---HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 469 EHYACMVDL---LGRTGHLKSAYELLNSM-PVEPHASAWGALL-GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 469 ~~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+.+.|+.. -.+.++.+++..++..+ ...|.......+- ..+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344444443 35677888888888877 4566655554443 556788888888888888888888888777788877
Q ss_pred HHhcCCc
Q 046956 544 YATADRW 550 (574)
Q Consensus 544 ~~~~g~~ 550 (574)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 7777763
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.19 E-value=0.39 Score=38.28 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=36.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 480 RTGHLKSAYELLNSM-PVEPHASAWGALL-GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
..++.+++..+++.+ ...|+......+- ..+...|++++|.++++...+..+..+..-..++.++...||
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355666666666555 2334333222222 334555666666666666655555555555555555555554
No 280
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.11 E-value=2.6 Score=34.08 Aligned_cols=86 Identities=7% Similarity=0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
-..++..+...+.+......++.+...+. .+...++.++..+++.+. ......+.. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44556666666666667777666666553 455566666666654422 222222221 1223333345555555
Q ss_pred CCChHHHHHHHccC
Q 046956 184 RKEISCARKVFDEM 197 (574)
Q Consensus 184 ~g~~~~A~~~~~~~ 197 (574)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555444443
No 281
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=8.6 Score=39.72 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=51.2
Q ss_pred hccCCcHHHHHHHHHHHHhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHH
Q 046956 147 SHVLSVREGTAIHAAVIRWGVDE---DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223 (574)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 223 (574)
.+.+.+++|..+-+... |..| -..+...+|..+.-.|++++|-...-.|...+..-|..-+..+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 34445555554443322 2222 223455666666677777777777777766666666666666666666554333
Q ss_pred HHhhcCC-CCcchHHHHHHHHHc
Q 046956 224 VFDLMPE-RSNVSWNALIGGLVK 245 (574)
Q Consensus 224 ~~~~~~~-~~~~~~~~l~~~~~~ 245 (574)
++-.-.. -++..|..++..+..
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH
Confidence 3221111 134455555555554
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.91 E-value=0.13 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+|..+...|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788889999999999999986654
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.60 E-value=0.18 Score=45.85 Aligned_cols=101 Identities=12% Similarity=0.005 Sum_probs=74.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-V-EPHASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~ 515 (574)
-.+-|.+.|.+++|+.+|..... ..+-|+..+..-..+|.+...+..|..-...+- . +.-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999998874 333388888888899999999988877665541 1 1123355555566667889
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 516 IELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
..+|.+-++.++++.|++...--.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999999965544333
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.54 E-value=2.9 Score=34.61 Aligned_cols=117 Identities=10% Similarity=0.060 Sum_probs=55.2
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC--ChHHHHHHHccCCC
Q 046956 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPE 199 (574)
Q Consensus 122 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 199 (574)
+..+.+.+.++.|+...+..++..+.+.|.+..- ..++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 3444445556666666666666666666654433 33333444444433332221111110 1223333333332
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcc
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (574)
..+..++..+...|++-+|+++.+.....+......++.+..+.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 23445556666677777777766665443333334444444433
No 285
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.51 E-value=11 Score=39.85 Aligned_cols=256 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
|.-....|+++.|-.++++.... +...+++.......+.+-..-....+. ..-.-+-......+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~---------------L~~~~~lsll~~~~~~lP~~~l~~~P~-Lvll~aW~~~s~~r 430 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQ---------------LFNGSELSLLLAWLKALPAELLASTPR-LVLLQAWLLASQHR 430 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhh---------------hhcccchHHHHHHHHhCCHHHHhhCch-HHHHHHHHHHHccC
Q ss_pred HHHHHHHHhhCCCCChh-----------HHHHHHHHHH-HcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhcc
Q 046956 382 MDRAAELFETMPNRDVV-----------SYCSMIKGLS-IHGHGRQAVSLFDRMLSE----GLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 382 ~~~A~~~~~~~~~~~~~-----------~~~~li~~~~-~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~ 445 (574)
+++|..++.+....=.. .|+.+-.... ..|++++|.++.+..... -..+....+..+..+..-.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-----HhhcC--CHHHHHHHHHhC------CCCCCHHHHHHHHHHHHh
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL-----LGRTG--HLKSAYELLNSM------PVEPHASAWGALLGACKL 512 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g--~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~ 512 (574)
|++++|..+..+..+. .-.-+...+..++.. +...| .+++....|... ...-...........+..
T Consensus 511 G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~ 589 (894)
T COG2909 511 GELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA 589 (894)
T ss_pred chHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhh------CCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHhCCCccCCCcccC
Q 046956 513 YSDIELGELVANRLFEL------EPQNAGSYV-LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~------~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 574 (574)
.-+++.+..-....++. .|.+..... .|+.++...|+.++|...++++..-.....+..-|+
T Consensus 590 ~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 590 WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=11 Score=39.33 Aligned_cols=170 Identities=12% Similarity=0.043 Sum_probs=102.1
Q ss_pred HHHhcCCChHHHHHHhhccCCCChh---hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHH
Q 046956 78 LCHSLATPLSYSTAVFNRIVNPNTF---LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 154 (574)
.+..+..-++.|..+-+.-..+... ..-....-+.+.|++++|...|-+-+.. +.| ..++.-+....+..+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHH
Confidence 4445555667777766554322211 2333445567899999999988776543 222 235555666667777
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChh--hHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV--SWTAMIVGYASVGDLVEAKTVFDLMPERS 232 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 232 (574)
-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|.-+-.+... .
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 77888888888864 555667889999999999888888877662 111 133445555555555555555444333 2
Q ss_pred cchHHHHHHHHHccCChHHHHHHHhcC
Q 046956 233 NVSWNALIGGLVKIGDLRSARQLFDEM 259 (574)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (574)
......+ +-..+++++|.+.+..+
T Consensus 493 e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 493 EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 2222222 23455666666666655
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.31 E-value=0.14 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+.++..++.+|...|++++|.+.+++..+..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999988654
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.30 E-value=0.029 Score=45.78 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=55.2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 046956 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 142 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 221 (574)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666777777777788777766566677778888888888777777777774332 2234455566666666666
Q ss_pred HHHHhhcC
Q 046956 222 KTVFDLMP 229 (574)
Q Consensus 222 ~~~~~~~~ 229 (574)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66655543
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.30 E-value=0.31 Score=44.38 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=67.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
-..-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-...++.. ...-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999887 567 8889988889999999998888777766642 111123344444444455
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHH
Q 046956 482 GHLKSAYELLNSM-PVEPHASAW 503 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p~~~~~ 503 (574)
|+..+|.+-++.. ..+|+...+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHH
Confidence 6666776666655 566764433
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=4.5 Score=34.13 Aligned_cols=129 Identities=8% Similarity=0.011 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI--VLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYA 472 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~ 472 (574)
.|..++.... .+.. +.....+++....-.....++.. +...+...|++++|...++..... +.|. ..-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444444433 2333 55556666665421212223333 345678889999999999887742 2221 2223
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.|.+.....|.+++|++.++....+. .......-...+...|+-++|+..|+++++..++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 46677888999999999998874221 1222333347889999999999999999998744
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=1.1 Score=36.55 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=71.4
Q ss_pred HHHHHHHH---HHhccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 046956 433 VAFTIVLT---ACSHVGLVEDGWRFFEAMQNVYAIVPSPE-HYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALL 507 (574)
Q Consensus 433 ~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 507 (574)
.+.+.|+. .-.+.++.+++..++..+. .+.|... .-..-...+...|++.+|+.+|+++. ..|.......++
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34455554 3457789999999999987 4566543 33334566889999999999999993 345555556666
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 508 GACKL-YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 508 ~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
..|.. .||.+ =....+++++..++ +.....+. .+....+...|..
T Consensus 85 A~CL~~~~D~~-Wr~~A~evle~~~d-~~a~~Lv~-~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 85 ALCLYALGDPS-WRRYADEVLESGAD-PDARALVR-ALLARADLEPAHE 130 (160)
T ss_pred HHHHHHcCChH-HHHHHHHHHhcCCC-hHHHHHHH-HHHHhccccchhh
Confidence 55544 44433 33445556665553 44444333 3444444444443
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.22 E-value=1.5 Score=37.17 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHH--HH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--CM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 474 (574)
.+..+...|.+.|+.++|.+.|.++.+....+... .+..++......|++..+...+.++........+....+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666667777777777777766654444432 455666666667777777776666654311111121111 11
Q ss_pred H--HHHhhcCCHHHHHHHHHhC
Q 046956 475 V--DLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 475 ~--~~~~~~g~~~~A~~~~~~~ 494 (574)
. -.+...|++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1234567777777777665
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.20 E-value=5.8 Score=35.22 Aligned_cols=240 Identities=17% Similarity=0.183 Sum_probs=136.0
Q ss_pred cCChHHHHHHHhhCCC----C---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccC
Q 046956 277 VGDMTSARSLFEAAPD----R---DVVAWSALISGYAQNGQPDEAVKIFSDMCSK---NV--QPDEFILVSLMSACSQVG 344 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~ 344 (574)
..+.++|+.-|.++.+ + .-.+...+|..+.+.|++++.+..|.++..- .+ .-+....+.++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777766543 1 1234556778888888888888888777531 11 124456667776666666
Q ss_pred CcchHHHHHHHHHHh-----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--------CC-------hhHHHHHH
Q 046956 345 NLDLSNWVDSYLSRS-----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--------RD-------VVSYCSMI 404 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li 404 (574)
+.+....+++.-.+. +...--. +-..|...|...|.+.+..++++.+.+ .| ...|..-|
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFK-TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFK-TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeee-ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666555555433321 1000000 234577888888888888888877652 11 24677778
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHhHhhcCCC--CcH---HHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTAC-----SHVGLVEDGWRFFEAMQNVYAIV--PSP---EHYAC 473 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~~---~~~~~ 473 (574)
..|..+++-.+...+|++.+.. ..-|.+... .+++-| .+.|.+++|..-|-++-+.+.-. |.. --|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 8888888888888888876642 234444433 334433 46788888876555554433222 222 22455
Q ss_pred HHHHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 474 MVDLLGRTGH----LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 474 l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
|+..+.+.|- .++|.- .+..|.......++.+|.. +++.+-++++
T Consensus 278 LANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 6666666651 111110 0223445556667777754 4554444443
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.06 E-value=7.3 Score=35.98 Aligned_cols=20 Identities=0% Similarity=-0.296 Sum_probs=14.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLF 527 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~ 527 (574)
..+.+.++++.|...|+-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34567788888888887654
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.93 E-value=1.1 Score=37.28 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++|...|+++...+|++......|-.. ++|-++..++.+++.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 5677788888888899877665555432 457777777766654
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.77 E-value=0.18 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+|..++.+|...|++++|...+++.++-+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999988754
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.76 E-value=0.27 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=13.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..++.+.|++++|.+.++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444555555555555555555554
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.70 E-value=4.8 Score=33.97 Aligned_cols=90 Identities=12% Similarity=-0.035 Sum_probs=65.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL-----GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+...+..+|++++|...++..-..|....+..++ ......|.+++|+..++...+-.- .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 4567889999999999998764344444444433 556788888988887765332211 1233556799999999
Q ss_pred CchHHHHHHHHHHhCC
Q 046956 549 RWLDVCLVRSKMKERG 564 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~ 564 (574)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998876
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.67 E-value=1.8 Score=36.44 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=44.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDE-----VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLL 478 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 478 (574)
.-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++. .|+ ......-+.+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 3455666666666666666663 22221 12333334555666666666655555532 222 22222334456
Q ss_pred hhcCCHHHHHHHHHhC
Q 046956 479 GRTGHLKSAYELLNSM 494 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~ 494 (574)
.+...+++|++-++++
T Consensus 179 ek~ek~eealeDyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKI 194 (271)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 6666666666666655
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.54 E-value=0.81 Score=41.40 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
.++..++..+...|+++.+.+.++++ ...| +...|..++.+|...|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35555666666666666666666555 3333 455566666666666666666666666554
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.46 E-value=8.3 Score=37.06 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 498 PHASAWGALLGACKLYSDIELGELVANRLFELEP----QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 498 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
....+|..+...+.+.|.++.|...+.++...++ ..+.+...-++.+...|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456788888999999999999999999988642 2567778889999999999999999998887433
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.31 E-value=1.3 Score=42.50 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=88.0
Q ss_pred HHHHHHcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC
Q 046956 404 IKGLSIHGHGRQAVSLFDR-MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 482 (574)
|.--...|+.-.|.+-+.. +....-.|+....... .+...|+++.+.+.+..... -+.....+..++++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 3334456787776654444 4443334555444333 36778999999999888775 44556677888899999999
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 483 HLKSAYELLNSM-PVE-PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 483 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
++++|...-+.| +.+ .++.............|-++++.-.+++.+.++|....-+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 999999988887 322 2334444344455667888999999999999986544433
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.98 E-value=3.5 Score=34.91 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=70.7
Q ss_pred CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCC
Q 046956 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE---GLTP 430 (574)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p 430 (574)
..+.+....+..++..|.+.|+.+.|.+.|.++.+. -+..+-.+|+.....+++..+...+.+.... |-.+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 334444447888999999999999999999998753 2346777888888999999999888876643 2222
Q ss_pred CHHHHHHHHH--HHhccCcHHHHHHHHHHhHhh
Q 046956 431 DEVAFTIVLT--ACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 431 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~ 461 (574)
+...-..... .+...+++..|-+.|-.....
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2222112222 245578999999888777653
No 304
>PRK10941 hypothetical protein; Provisional
Probab=91.84 E-value=1.2 Score=40.46 Aligned_cols=63 Identities=19% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.+.+-.+|.+.++++.|+++.+.++.+.|+++.-+..-+-+|.+.|.+..|..-++...+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 344446778888888888888888888888888888888888888888888888887776654
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.68 E-value=11 Score=34.95 Aligned_cols=135 Identities=9% Similarity=0.188 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCC----cchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH
Q 046956 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ--VGN----LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384 (574)
Q Consensus 311 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (574)
+++.+.+++.|.+.|+.-+..+|......... ..+ ...+..+++.|.+..+-.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~------------------ 139 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP------------------ 139 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc------------------
Confidence 45567788889999888888777664443333 111 235556666666655433322
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHH
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIHGH----GRQAVSLFDRMLSEGLTPDEV--AFTIVLTACSHVGL--VEDGWRFFE 456 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~ 456 (574)
+-..+..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++
T Consensus 140 -----------~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 140 -----------EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred -----------cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 22223333222 1122 355677788888877766543 33333332222211 446777888
Q ss_pred HhHhhcCCCCcHHHHHHHHHH
Q 046956 457 AMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~ 477 (574)
.+.+. ++++....|..++-.
T Consensus 207 ~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHc-CCccccccccHHHHH
Confidence 88876 888877777655443
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.68 E-value=0.2 Score=28.19 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
++..++.++.+.|++++|.+.|++++++-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999987543
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=6.9 Score=32.34 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHhccCcHHHHHHHHHHhHh
Q 046956 441 ACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~ 460 (574)
+-.+.|++..|.+.|..+..
T Consensus 176 Aa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccchHHHHHHHHHHHc
Confidence 33444444444444444443
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.49 E-value=0.72 Score=38.23 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
.+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 36778888999999999999999999999987663
No 309
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=9 Score=33.43 Aligned_cols=53 Identities=6% Similarity=-0.097 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchh-------HHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAGS-------YVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
-...+++.+|+.+|++.....-+++.. +..-+.++.-.++.-.+...+++..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 355677777777777776654333321 12222233333555555555554443
No 310
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.19 E-value=6.1 Score=30.97 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=71.9
Q ss_pred HhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 377 AKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.-.|..++..+++.+..+ .+..-+|=+|.-....-+-+-..+.++..-+ --|. ...|+.......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHHHH
Confidence 345777777888777653 3444444444444433344444444443322 1121 1223333333333
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
-.+- .+.+....-++.+...|+-+.-.+++..+ ..++++..+..+..+|.+.|+..++.+++.++-+..
T Consensus 80 ~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 80 AKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2221 12333444556677888888888888776 346778888888899999999999999998887653
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.14 E-value=0.31 Score=25.82 Aligned_cols=24 Identities=4% Similarity=-0.129 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHH
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.10 E-value=11 Score=33.98 Aligned_cols=59 Identities=15% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.....|...|.+.+|.++.++++.++|-+...+..|...+...||--+|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33447889999999999999999999999999999999999999998888888887753
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.08 E-value=3 Score=37.90 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHYACM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 474 (574)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666642 33445666666666666666666666665544 12556665555444
Q ss_pred HHH
Q 046956 475 VDL 477 (574)
Q Consensus 475 ~~~ 477 (574)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 314
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.04 E-value=0.94 Score=33.16 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ--NAGSYVLLSNIYATADR 549 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 549 (574)
.....+...+...|++++|++.+-.+++.+|+ +..+-..|..++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444445555555555555555555555433 24444555555555554
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.73 E-value=0.97 Score=38.60 Aligned_cols=62 Identities=21% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 472 ACMVDLLGRTGHLKSAYELLNS-MPVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
+..+..+.+.+.+.+|+...+. .+.+|. ...-..++..++-.|++++|..-++-+-++.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3345566667777777766543 344553 3344555577777777777777777776666664
No 316
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=1.1 Score=38.76 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
.+.+..+++.+..--.+++++.|+.....+.|+........+++|...+++.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555544444
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.71 E-value=1.4 Score=28.36 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
.+..++.+.|+++.|.+..+.+++..|+|..+....
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455678899999999999999999999988765544
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.59 E-value=0.57 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
.+|..++.+|...|++++|...|++..+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
No 319
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.49 E-value=0.32 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHhhcCCHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455555555555555555553
No 320
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.44 E-value=12 Score=33.23 Aligned_cols=74 Identities=22% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNV--QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (574)
+..-.+.|++++|.+.|+.+..... +-...+...++.++.+.++.+.|....++..+..+..+.. -|..-+.++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgL 116 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGL 116 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHH
Confidence 3444566777777777777665421 1123444555555666666666666666655554444333 343333333
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=4.7 Score=40.19 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=86.8
Q ss_pred HHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046956 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 212 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
....|+++.|..++..+.++ .-+.++.-+.+.|..++|+++--. ||. -.....+.|+++.|.++..+..
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~ 664 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN 664 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc
Confidence 34456777776666555532 234455556666777777665431 111 1234456778888877655443
Q ss_pred CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHH
Q 046956 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371 (574)
Q Consensus 292 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (574)
+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.
T Consensus 665 --s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-------N~ 726 (794)
T KOG0276|consen 665 --SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-------NL 726 (794)
T ss_pred --chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-------ch
Confidence 566788888888888888888888876643 344555666666655544444444444421 22
Q ss_pred HHHHhHhcCCHHHHHHHHhh
Q 046956 372 LVDMNAKCGNMDRAAELFET 391 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~ 391 (574)
-..+|...|+++++.+++.+
T Consensus 727 AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 22334445555555555443
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.27 E-value=0.79 Score=27.46 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555544
No 323
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.19 E-value=27 Score=36.68 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHhhC---CCCch-hH-----HHHHHHHHhcCCchHHHHHHHHHH
Q 046956 513 YSDIELGELVANRLFELE---PQNAG-SY-----VLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.|+.++.......+.... |+... .| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777766666666542 22222 22 245666888999999988887654
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.18 E-value=20 Score=35.28 Aligned_cols=170 Identities=9% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
...+++..+....++.-.+.+..++. ..+-..|..++.+|... ..++-..+|+++.+. .-|...+..-+..+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHH
Confidence 44455555555555555555555554 24445566666666666 446666667766663 23333333333333333
Q ss_pred CcHHHHHHHHHHhHhhcCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPS------PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGALLGACKLYSD 515 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~ 515 (574)
++.+.+..+|.++... +-|. .+.|..+.... ..+.+.-..+..++ +..--...+..+..-|....+
T Consensus 145 ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6666666666666652 2221 13344333221 12333344443333 222223334444455666677
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
+.+|++++...++.+..|..+...++.-+
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 77777777777777666666655555443
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.12 E-value=3.4 Score=30.58 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.+. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 55666677777778999999999999999999999999999999875443 3336776653
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.88 E-value=16 Score=33.71 Aligned_cols=158 Identities=11% Similarity=-0.028 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGR---QAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
+...++.+|...+..+ +|..+++.+... -|+ +..+..-+..+.+.++.+.+.+.+.+|+.. +.-....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHH
Confidence 5566677777666544 455566666443 233 345555666666688888888888888874 33122233333
Q ss_pred HHHH---hhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HH-HH--HHhcCC------HHHHHHHHHHHHhh--CCCCch
Q 046956 475 VDLL---GRTGHLKSAYELLNSM---PVEPHAS-AWGA-LL-GA--CKLYSD------IELGELVANRLFEL--EPQNAG 535 (574)
Q Consensus 475 ~~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-l~-~~--~~~~~~------~~~a~~~~~~~~~~--~p~~~~ 535 (574)
+..+ ..... ..|...+..+ ...|... .... ++ .. ....++ .+....+++...+. .|-++.
T Consensus 162 l~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3333 33332 3444444333 2233222 1111 11 11 122222 33333444433322 344443
Q ss_pred hHH-------HHHHHHHhcCCchHHHHHHHHHH
Q 046956 536 SYV-------LLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 536 ~~~-------~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+.. .-+...++.++|++|.+.++-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 322 23555788999999999998544
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.87 E-value=12 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
..||.+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34555555555555555555555555444
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.84 E-value=2.3 Score=37.26 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHH-------HHHHHHHHHHhhC--CC----CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 503 WGALLGACKLYSDIE-------LGELVANRLFELE--PQ----NAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+..+.+.|...|+.+ .|...|+++.+.. |. ...+.+.+|.+..+.|++++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334445666666644 4445555555442 22 246788899999999999999999999886553
No 329
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.76 E-value=11 Score=31.42 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChh
Q 046956 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203 (574)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 203 (574)
++.+.+.+.|++|+...+..+++.+.+.|++.....++.--.-+|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk 61 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcH
Confidence 45556667789999999999999999999988888777654444433
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.73 E-value=2.9 Score=33.57 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=51.9
Q ss_pred HHHHHHHHH---HhccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHH
Q 046956 433 VAFTIVLTA---CSHVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALL 507 (574)
Q Consensus 433 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~ 507 (574)
...+.|+.. -...++.+++..+++.+. .+.|+. ..-..-...+...|++.+|..+|++....+ ....-..++
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344445443 345789999999999987 445553 222333556789999999999999995443 434344444
Q ss_pred HHH-HhcCCHH
Q 046956 508 GAC-KLYSDIE 517 (574)
Q Consensus 508 ~~~-~~~~~~~ 517 (574)
..| .-.||.+
T Consensus 85 A~CL~al~Dp~ 95 (153)
T TIGR02561 85 ALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCChH
Confidence 334 3344443
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.69 E-value=27 Score=36.03 Aligned_cols=246 Identities=11% Similarity=0.014 Sum_probs=131.1
Q ss_pred HhCCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----CcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 306 AQNGQPDEAVKIFSDMCS-------KNVQPDEFILVSLMSACSQVG-----NLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
....+++.|+..|+.+.+ .| .......+..+|.+.. +.+.|..++....+.|.+.. ...++
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a----~~~lg 332 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA----QYLLG 332 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH----HHHHH
Confidence 344566777777766655 33 2223344445554433 33456666666666554432 22233
Q ss_pred HHhHhc---CCHHHHHHHHhhCCC-CChhHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 374 DMNAKC---GNMDRAAELFETMPN-RDVVSYCSMIKGLS----IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 374 ~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
..+... .+...|.++|...-+ ..+..+-.+..+|. ...+.+.|..++++..+.| .|...--...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 333322 356677777776653 33333333333332 2346778888888888877 4443222233333444
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL---GR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YS 514 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 514 (574)
+.++.+.-.+..+... +.......-..+.... .. ..+.+.+...+.+...+-+......+...|.. ..
T Consensus 411 ~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 6666666655555543 3322211111111111 11 22555666666666444455555555544432 34
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-C--CchHHHHHHHHHHhCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATA-D--RWLDVCLVRSKMKERG 564 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~~ 564 (574)
+++.|...+.++.... ......|+.++... | ++..|.+++++..+.+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6888888888887766 77777787776531 1 2678888888776543
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.68 E-value=2.9 Score=30.53 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
.-++.+-++.+....+.|++......+.+|.+.+++..|.++|+..+.+.+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 335666677777778899999999999999999999999999998886433 3455666654
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.60 E-value=5.7 Score=29.26 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
+..+...|++++|..+.+....||...|.+|.. -+.|..+++..-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667888888888888888888888876654 35677777777777777665 4444444
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.55 E-value=0.7 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 538 VLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999888654
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.36 E-value=23 Score=34.86 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=57.9
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
|-...-+++..+.++..+.-+..+..+|...| .+...|..++.+|... ..+.--.+++++++....... .-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv--~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV--IGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH--HHHHHH
Confidence 33445566777777777777777777777654 4566777777777666 455666667766665443322 334455
Q ss_pred HHhHhcCCHHHHHHHHhhCC
Q 046956 374 DMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~ 393 (574)
..|.+ ++.+.+..+|.++.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHH-hchhhHHHHHHHHH
Confidence 55544 66666666665543
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.15 E-value=57 Score=38.99 Aligned_cols=308 Identities=12% Similarity=0.034 Sum_probs=158.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhc----CCC--CcchHHHHHHHHHccCChHHHHHHHh-cCCCCchhHHHHHHHHHHhcCC
Q 046956 207 AMIVGYASVGDLVEAKTVFDLM----PER--SNVSWNALIGGLVKIGDLRSARQLFD-EMPERNVVSYTTMIDGYAKVGD 279 (574)
Q Consensus 207 ~li~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 279 (574)
++..+-.+.+.+.+|+..++.- .+. ....+..+...|+..+++|....+.. ....|+ ....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555666788999999999883 222 22344455558888888888777666 232222 2334556677899
Q ss_pred hHHHHHHHhhCCCC--C-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCCcchHHHHHHH
Q 046956 280 MTSARSLFEAAPDR--D-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS-LMSACSQVGNLDLSNWVDSY 355 (574)
Q Consensus 280 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~ 355 (574)
+..|...|+.+.+. + ..+++-++......|.+..++...+-.... ..+....++. =..+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999999863 2 557888888777888888877766555443 2223333332 2233356677776666554
Q ss_pred HHHhCCCCChhhHHHHHHHHhHhcCCHHH--HHHHHhhCC----C---------CChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDR--AAELFETMP----N---------RDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~----~---------~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
..+...-. +. .++....+..+-+. -.+.++.+. . .-...|..++....-..- +.-.
T Consensus 1543 --~~n~e~w~--~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~~--- 1613 (2382)
T KOG0890|consen 1543 --DRNIEYWS--VE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENSI--- 1613 (2382)
T ss_pred --cccccchh--HH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHHH---
Confidence 11111111 11 12222222211110 001111111 0 011233443333221111 0001
Q ss_pred HHHHHCCCCCCHH------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-----cHHHHHHHHHHHhhcCCHHHHHH
Q 046956 421 DRMLSEGLTPDEV------AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-----SPEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 421 ~~m~~~g~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
+.. .++.++.. .|..-+..-....+..+-+-.+++..-.....| -..+|...++...++|+++.|..
T Consensus 1614 ~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1614 EEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111 11233221 111111111111111111111111111101111 24678888888888999999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 490 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+-.+...--+..+..........|+...|+.++++.++++
T Consensus 1692 all~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77666322234455566677889999999999999999763
No 337
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=36 Score=36.67 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3888999999999999999999888764
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.04 E-value=0.68 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998864
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.03 E-value=40 Score=37.09 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=80.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 448 (574)
+....+.-.+.|-+++|..++..-.+.--..|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 334444445555566655555432222223444445555566777777777665322 12345667778888
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
++|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+...+|.. .+..+++...+++|.++.....
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 888888776654 22222233356777788888888888888776434322 1223344455666666555443
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.32 E-value=10 Score=37.94 Aligned_cols=131 Identities=15% Similarity=0.038 Sum_probs=63.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
..+.++..+.+.|-.++|+++-.. ||. -.....+.|+.+.|.++..+ ..+..-|..|.++....|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e------~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVE------ANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHh------hcchHHHHHHHHHHhhccc
Confidence 344455555555555555543211 111 11222345666666655443 2234566666666666777
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
+..|.+.|..... |..|+-++...|+-+....+-...+.+ ...|....+|...|+++++.+++..
T Consensus 682 l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~---g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQ---GKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhh---cccchHHHHHHHcCCHHHHHHHHHh
Confidence 7777666665543 334444555555544333333222100 0112223455667777777666554
No 341
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=2 Score=37.48 Aligned_cols=58 Identities=10% Similarity=-0.082 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
...+...|++-++++...+.+...|.|..+|+.-+.+....=+.++|..-|....+..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3445566777777777777777777777777777776666666666666666665543
No 342
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.08 E-value=0.69 Score=37.62 Aligned_cols=84 Identities=8% Similarity=0.105 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 186 (574)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++ ..+..-...+++.+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 455556666666666666666665544455666666777766666565555554 1111223345555555555
Q ss_pred hHHHHHHHccC
Q 046956 187 ISCARKVFDEM 197 (574)
Q Consensus 187 ~~~A~~~~~~~ 197 (574)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555544
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.54 E-value=1.4 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
..+...+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344445555555555555555555544
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.32 E-value=16 Score=30.37 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHH--HHHHhhcCC
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE-HYACM--VDLLGRTGH 483 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~ 483 (574)
.+.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-.. .-.|-.. -...| ...+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45567788888888877766433222 2223334456778888888888887754 2222211 11111 234567778
Q ss_pred HHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 484 LKSAYELLNSMP--VEPH-ASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 484 ~~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
+++...-.+-+. .+|- ...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 887777777662 2232 23334555666778888888888877665
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.09 E-value=33 Score=33.84 Aligned_cols=241 Identities=8% Similarity=0.006 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------cchHHHHHHHHHHh-CCCCChhhHHHHHHHHhHhcCCHHH-
Q 046956 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN------LDLSNWVDSYLSRS-HMDLSRAHVIAALVDMNAKCGNMDR- 384 (574)
Q Consensus 313 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~- 384 (574)
....+|++..+. .|+...+...|..|...-. +.....+++...+. +..+.....|..+...+.......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334666666543 5566666666666543222 23334444444433 2333333356666666666554443
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHH-H-HHHHHhH
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIH-GHGRQA-VSLFDRMLSEGLTPDEVAFTIVLTACSHVGL-VEDG-W-RFFEAMQ 459 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a-~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a-~-~~~~~~~ 459 (574)
|..+..+..+.+...|-.-+...... .+++-- ..++......=..+....|+... .|+ .+.. . .++....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 33444355556666666555554422 122211 12222222211122222333333 122 1111 1 1222222
Q ss_pred hhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 460 NVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSMPV--EPHASAWGALLGAC--KLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 460 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
. ...|+. ..-+.+.+-+.+.|-..+|.+.+.++.. .|+...+..++..- ...-+..-+..+|+.++...-.++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 233443 3345677778888888899988888732 34556666666332 223347778888888887655778
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..|......-...|.-+.+-.++.++.+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8887777666788888888877766653
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.03 E-value=4.7 Score=34.38 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=51.5
Q ss_pred hhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C---CCchhHHHHHHHHHhcCCchH
Q 046956 479 GRTGHLKSAYELLNSMPVEP--HASAWGALLGACKLYSDIELGELVANRLFELE-P---QNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~~~~ 552 (574)
.+.|+ ++|.+.|-.+...| +....-..+..|....|.++++.++-+++++. | -|+.++..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45666666653222 33333344445555778999999999999873 3 368899999999999999998
Q ss_pred HH
Q 046956 553 VC 554 (574)
Q Consensus 553 a~ 554 (574)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.79 E-value=25 Score=36.23 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCcHHHH
Q 046956 398 VSYCSMIKGLSIHG-----HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHY 471 (574)
Q Consensus 398 ~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (574)
.....+..+|.+.. +.+.|..++.+..+.| .|+...+...+..... ..+...|.++|..+.+. |..+. +
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A---~ 363 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILA---I 363 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHH---H
Confidence 34455555555532 5666888888877776 4555444333322222 24567788888777764 43322 2
Q ss_pred HHHHHHHh----hcCCHHHHHHHHHhC
Q 046956 472 ACMVDLLG----RTGHLKSAYELLNSM 494 (574)
Q Consensus 472 ~~l~~~~~----~~g~~~~A~~~~~~~ 494 (574)
-.+..+|. -..+.+.|..++++.
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 22222221 233566666666665
No 348
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.57 E-value=7.1 Score=35.61 Aligned_cols=90 Identities=12% Similarity=0.205 Sum_probs=64.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-R--------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
....++..-....+++.++..+-++.. | ...+|-.++. .=++++++.++..=++.|+-||..+++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 344445555555677777777766652 2 2233333332 23667899999888899999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHhh
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
++.+.+.+++.+|.++.-.|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999998887777653
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.43 E-value=0.47 Score=43.44 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=26.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+.+.+.+....|++-+..+++++|++..-|-.-+.+....|+|++|...+....+.+
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 344444444444444444455555444444444444444445555444444444433
No 350
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.95 E-value=49 Score=34.79 Aligned_cols=325 Identities=9% Similarity=-0.020 Sum_probs=150.1
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcc
Q 046956 170 DVFVGTSLIDLYGKRKEISCARKVFDEMP---ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246 (574)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (574)
+.........+....|+.++|......+- ......++.++..+.+.|.+.... +. .-+......
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w------------~R~~~al~~ 194 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YL------------ERIRLAMKA 194 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HH------------HHHHHHHHC
Confidence 33334445555566666555544444331 123445555666655555443322 11 112233445
Q ss_pred CChHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHH--HhCCCchHHHHHHHHHHH
Q 046956 247 GDLRSARQLFDEMPERN-VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY--AQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 247 ~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~ 323 (574)
|+...|..+...+ .++ ......++..+.+-.++ ...+.... ++...-..++.++ ....+.+.|..++.....
T Consensus 195 ~~~~lA~~l~~~l-~~~~~~~a~a~~al~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 195 GNTGLVTYLAKQL-PADYQTIASALIKLQNDPNTV---ETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred CCHHHHHHHHHhc-ChhHHHHHHHHHHHHHCHHHH---HHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6666666666655 332 22333444444333333 33333221 1111111111111 234456788888887644
Q ss_pred CC-CCCCHH--HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-h
Q 046956 324 KN-VQPDEF--ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-V 397 (574)
Q Consensus 324 ~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~ 397 (574)
.. ..+... +...+.......+..+.+...+....... .+.. ....-+....+.++++.+...+..|.. .+ .
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~-~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~ 346 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS-LLERRVRMALGTGDRRGLNTWLARLPMEAKEKD 346 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH-HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCH
Confidence 32 322222 22233222223222444544444433221 1222 455555566678888888888888762 11 1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH-HHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG-WRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
.-..=+.+++...|+.++|...|+++.. .. +|..++.+ .+.|..-.- ......-.. .+..++ -..-+.
T Consensus 347 rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~ 415 (644)
T PRK11619 347 EWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDS--ALTQGP--EMARVR 415 (644)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhh--hhccCh--HHHHHH
Confidence 1122245565667888888888888643 12 23333221 112211000 000000000 000001 112244
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
.+...|...+|...+..+....+......+.......|.++.++....+.
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 56677888888887776633345555555656667788888887766544
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.92 E-value=27 Score=31.81 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCCcchHHHHHHHHHcCCChHHHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHh
Q 046956 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-----RNVVSWTAMIVGYASVGDLVEAKTVFD 226 (574)
Q Consensus 168 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~ 226 (574)
.++..+...++..+++.+++.+-.++++.... .|...|..+|......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 45555555566666666666666665554432 355566666666666666555555444
No 352
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.50 E-value=65 Score=35.75 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=8.8
Q ss_pred cHHHHHHHHHHHhhcCCHH
Q 046956 467 SPEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~ 485 (574)
+...-...+.++...|..+
T Consensus 788 d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP 806 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc
Confidence 3444444445555554433
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.06 E-value=6.1 Score=28.95 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=43.6
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+.-++.+-+..+......|+.....+.+++|.+.+++..|.++++-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 334566666777777788888888888888888888888888888776432 223445555543
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.73 E-value=2.5 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
|+.+.+..+|+++++..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999999888887654
No 355
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.73 E-value=16 Score=37.76 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=61.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEV---AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (574)
|...+..+.|.++|++.-+ +.|+.. .+..|+.+-.+. ++...+ +... | -.|-..+++.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~E----lq~I-g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSLE----LQQI-G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchHH----HHHH-H--------HHHHHHhhccch
Confidence 3344556778888888777 677664 233333332211 111111 1110 1 123445678888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
++.-.++++-. ..+.+-.-.+|+.+|++..+.+.+++|+....-..
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 87777766542 23344556789999999999999999885443333
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.14 E-value=58 Score=34.10 Aligned_cols=171 Identities=9% Similarity=0.066 Sum_probs=96.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCC---CcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVP---DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
-+..+.+.+.+++|+..-+.-... .| -.......|..+...|++++|....-.|... +..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 356678889999998887665432 33 2344566677777888888888777776532 34445555555555
Q ss_pred CCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCC
Q 046956 184 RKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (574)
.++......++=.-.. -+...|..++..+.. . .-..+++...+.+...|+.+.-.-+...++.+ - ..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-------~-Se 503 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-------N-SE 503 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-------h-cc
Confidence 5554443333222221 245567777777776 2 22233333334444444433221111111111 1 12
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCH
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 295 (574)
+...-..|+..|...+++++|+.++-.+.+.++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 233444588888999999999998888876543
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.13 E-value=3.3 Score=41.03 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=70.7
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PV-EPHASAWGALLGACKLYSDIEL 518 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 518 (574)
...|+...|...+..+... .|- ....-.|+..+.+.|...+|-.++... .+ ...+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3458888888888777643 332 233445677777888888888777554 21 2234566677788888889999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 519 GELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
|++.+++++++.|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998888877765544
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.96 E-value=31 Score=30.85 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=108.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCcchHHHHHHHHHH---hC--CCCChhhHHHHHHHHhHh
Q 046956 307 QNGQPDEAVKIFSDMCSKNVQPDE---FILVSLMSACSQVGNLDLSNWVDSYLSR---SH--MDLSRAHVIAALVDMNAK 378 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~~l~~~~~~ 378 (574)
+...+++|+.-|++..+..-.-.. .....++....+.+++++....+..+.. +. ...+.. ..+.+++....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK-sIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK-SINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHhh
Confidence 345788999999888765322223 3344567777888888888777776652 11 122233 56666666666
Q ss_pred cCCHHHHHHHHhhCCC-----CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHH
Q 046956 379 CGNMDRAAELFETMPN-----RDVV----SYCSMIKGLSIHGHGRQAVSLFDRMLSEGL----TPDE-------VAFTIV 438 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~-------~~~~~l 438 (574)
..+.+--.++++.-.+ .+.. +-..+...|...+++.+...+++++...-- ..|. ..|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 6666666655554331 2222 234566777777778888888877765311 1121 245555
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH----HHhhcCCHHHHHH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD----LLGRTGHLKSAYE 489 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~ 489 (574)
+..|....+-..-..+|++......--|.+.....+-. ...+.|++++|-.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 66676677777777777776654344566655544322 3456677777654
No 359
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.72 E-value=6 Score=29.32 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 119 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+..+-+..+......|+.....+.+++|.+.+++..|.++|+-++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666667777888888888888888888888888888776552 233336666554
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.70 E-value=2 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..+..++.++...|++++|...+++..+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467889999999999999999999887643
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=83.67 E-value=43 Score=32.24 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-CchhHHHHHHHHH-hcCCchHHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYA-TADRWLDVCLVRSKM 560 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 560 (574)
..+.+.|-+..|.+..+-++.++|. ||......++.|. +.++++--.++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455666666666666666666666 5555555554443 445555444444443
No 362
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=6.7 Score=36.10 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-P---VEP--HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.+|.-=++-|.+..++..|...|.+. . ..| +...|..-..+-...|++..++.-..+++..+|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34445566777888888888888765 1 123 34455555555667889999999999999999999999998888
Q ss_pred HHHhcCCchHHHHHHHHH
Q 046956 543 IYATADRWLDVCLVRSKM 560 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~ 560 (574)
++....++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888877776665543
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.87 E-value=13 Score=31.74 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
+.|...|-++...+.--++.....|...|. ..+.+++.+++..+.+.. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554443333333333333332 455555555555554421 1134455555555555555555554
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.19 E-value=70 Score=33.60 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=38.4
Q ss_pred HhcCCHHHHHHHHHHHHhhC---CC------CchhHHHHHHHHHhcCCchHHHHHHH
Q 046956 511 KLYSDIELGELVANRLFELE---PQ------NAGSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
...+++..+....+.+.+.. |. .+..+...|..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788999999998887652 22 35667788888889999999999997
No 365
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.12 E-value=6.8 Score=35.73 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=58.6
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC-CCC------hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 046956 62 KKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV-NPN------TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134 (574)
Q Consensus 62 ~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 134 (574)
..|.+....+...++ ..-....+++++...+-.+. .|+ ..++. .+ -++-.-++++++.++..=++-|+.|
T Consensus 57 ~~g~~~s~~~Vd~~V-~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~i-rlllky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLV-DVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WI-RLLLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hcCCCcceeehhhhh-hccccccchhHHHHHHHHHhcCcchhhhccccHHH-HH-HHHHccChHHHHHHHhCcchhcccc
Confidence 345555555555555 44444556666666654443 121 11111 11 1223445667777777777777777
Q ss_pred CcchHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 046956 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 166 (574)
|.+++..++..+.+.+++..|.++...|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766665543
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.95 E-value=18 Score=31.26 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhh-cCCCCcHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNV-YAIVPSPEHYACMVD 476 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~ 476 (574)
+.+..++.+.+.+...+++...++-++. +|. .-+-..++..++-.|++++|..-++-+-+. ....+....|..+++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455667778888899999888887774 454 446777888888899999998887766532 022233455665554
Q ss_pred HHhhcCCHHHHH-HHHHhC--C---CCCCHHHHHHHH-HH--HHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 477 LLGRTGHLKSAY-ELLNSM--P---VEPHASAWGALL-GA--CKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 477 ~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~-~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
+- .+. ++|..- + ..| ...|...+ .+ +..-|..+....+-+.+++..|..+.
T Consensus 81 ~e-------a~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 CE-------AARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 42 222 233322 1 112 33343333 33 33334455566666777777666543
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.95 E-value=18 Score=26.75 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC
Q 046956 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229 (574)
Q Consensus 150 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 229 (574)
...++|..+-+.+...+- ....+--.-+..+.+.|++++|..+.+.+.-||...|-+|... +.|..++...-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 356777777776665441 1222223334567788999999999999988999998777654 5677776666665555
Q ss_pred CC
Q 046956 230 ER 231 (574)
Q Consensus 230 ~~ 231 (574)
..
T Consensus 96 ~s 97 (115)
T TIGR02508 96 AS 97 (115)
T ss_pred hC
Confidence 44
No 368
>PRK12798 chemotaxis protein; Reviewed
Probab=81.77 E-value=52 Score=31.82 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHhhCCC----CChhHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 046956 379 CGNMDRAAELFETMPN----RDVVSYCSMIKGL-SIHGHGRQAVSLFDRMLSEGLTPDE----VAFTIVLTACSHVGLVE 449 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 449 (574)
.|+..+|.+.+..+.. +....+-.|+.+- ....+..+|+.+|+...- ..|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888889988888873 3445566666554 345788999999998765 34543 24555555678889999
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHH-HHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTG---HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
++..+-....+.|...|-...|.. +...+.+.+ ..+.-..++..|...--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888887776555554433332 333333333 4445556666663222345677777888889999999999999
Q ss_pred HHhhCCCCchhHHHHHHHH-----HhcCCchHHHHHHHHHHhCC
Q 046956 526 LFELEPQNAGSYVLLSNIY-----ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~ 564 (574)
+..+... ...-...+.+| .-..+.+++.+.++.+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 9988522 22222222223 34556777777776655443
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.44 E-value=3 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=9.2
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 046956 473 CMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~ 491 (574)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444445555555555444
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.63 E-value=27 Score=27.71 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 465 VPSPEHYACMVDLLGRTGHLK---SAYELLNSM-P-VEPH--ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.++..+--.+..++.+..+.+ +.+.+++.+ + ..|+ ......+.-++.+.++++.++++.+.+++..|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344444455555665554433 344455554 2 2232 22333444667778888888888888888888776654
No 371
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=80.48 E-value=62 Score=31.82 Aligned_cols=231 Identities=8% Similarity=-0.006 Sum_probs=108.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCh
Q 046956 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEI 187 (574)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 187 (574)
|.++...| +.++..+....... ++...+.....++....+......+.+.+ . .++..+.....++++..++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCCHHHHHHHHHHHhcCCch
Confidence 56666666 45666666655432 22333333333333222222122222222 1 34555667777777777776
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHH
Q 046956 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267 (574)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (574)
.....+..-+..++.......+.++...+. +-...+..-+..+|...-...+.++...+..+....+...+...|..+-
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 666665555555555554455555544331 1111222222334444445555555555554433333333434555555
Q ss_pred HHHHHHHHhcCChHHHHHHHhh-CCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCc
Q 046956 268 TTMIDGYAKVGDMTSARSLFEA-APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346 (574)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 346 (574)
..-+.+....|. .+|...+.. ...++......+...+... ..+++...+..+.+.. .+-...+.++...|+.
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d~-----~vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLRELLQAA-----ATRREALRAVGLVGDV 268 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHHhcCh-----hhHHHHHHHHHHcCCc
Confidence 555666666666 444444443 3333333333333333222 2335555555554331 1344455555555555
Q ss_pred chHHHHHH
Q 046956 347 DLSNWVDS 354 (574)
Q Consensus 347 ~~a~~~~~ 354 (574)
..+..+..
T Consensus 269 ~av~~L~~ 276 (410)
T TIGR02270 269 EAAPWCLE 276 (410)
T ss_pred chHHHHHH
Confidence 44444333
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.07 E-value=6.6 Score=29.05 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC----C-----chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 510 CKLYSDIELGELVANRLFELEPQ----N-----AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+.||+..|.+.+.+....... . ..+...++.++...|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888887777776664211 1 23456678888899999999998888764
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.80 E-value=1.3 Score=42.60 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=70.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-ACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKLYS 514 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~ 514 (574)
-+..+...+.++.|..++.++++ +.||...| ..-..++.+.+++..|+.=+.++ +..|.. ..|..-..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677888899999988884 46654443 33346788888888887665555 555542 34444446777788
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.+.+|...|+....+.|+++.+-..+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 8888888888888888988876655544
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.67 E-value=65 Score=31.62 Aligned_cols=109 Identities=7% Similarity=0.034 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
+++.+.+....-.|+....-+ .+....|+++.+.+.+.... ..+..+-..+++....-|+++.|..+-+-|...
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~---~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRS---VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHH---HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 445554444433344333322 23445666666666664432 334445556666666666677776666666655
Q ss_pred CCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 046956 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166 (574)
Q Consensus 131 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 166 (574)
.+. +...........-..|-++++...|+++...+
T Consensus 387 eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 387 EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 443 22222222223334455666666666665554
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.24 E-value=49 Score=32.17 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--hccCcHHHHHHHHHHhHh
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVLTAC--SHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 460 (574)
.+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678888888888888876 555544 444555554 345677888888887765
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.94 E-value=90 Score=32.80 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=14.1
Q ss_pred HhhcCCHHHHHHHHHhCCCCC
Q 046956 478 LGRTGHLKSAYELLNSMPVEP 498 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~p 498 (574)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457788888888888886655
No 377
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.77 E-value=13 Score=30.02 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+....+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 356677777774 33444445566778999999999999999999999999999999988777543
No 378
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.39 E-value=1.2e+02 Score=33.81 Aligned_cols=261 Identities=14% Similarity=0.079 Sum_probs=125.3
Q ss_pred HhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCCCCCHhHHHHHHH
Q 046956 225 FDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM-TSARSLFEAAPDRDVVAWSALIS 303 (574)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~ 303 (574)
...+..+|+..-...+..+.+.+..+....+...+.+++..+-...+.+..+.+.. .....+...+..+|...-...+.
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~ 706 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALD 706 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHH
Confidence 33334455555555555555555443333333444344444444444444333221 11112222233345544444455
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH
Q 046956 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383 (574)
Q Consensus 304 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (574)
++...+..+ .. .+-.+.+ .+|...-...+.++...+..+. +. ..-.+++.. +-...+.++...+..+
T Consensus 707 aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l~----~~l~D~~~~-VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 707 VLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---VA----GAATDENRE-VRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---HH----HHhcCCCHH-HHHHHHHHHHHhcccc
Confidence 544433211 11 2222222 3444444445555555443321 11 111122222 5555666666665543
Q ss_pred H-HHHHHhh-CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 384 R-AAELFET-MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 384 ~-A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
. +...+.. +..+|...-...+.++...|..+.+...+..+.+ .++...-...+.++...+. +++...+..+.+
T Consensus 774 ~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~- 848 (897)
T PRK13800 774 APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT- 848 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc-
Confidence 2 2233333 3457777777777788777776555444555554 3455556666667766665 345555555554
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 046956 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506 (574)
Q Consensus 462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 506 (574)
.|+..+-...+.++.+.+....+...+..+-.++|...-...
T Consensus 849 ---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A 890 (897)
T PRK13800 849 ---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYA 890 (897)
T ss_pred ---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 356666666677776654344566666555334454443333
No 379
>PRK10941 hypothetical protein; Provisional
Probab=78.24 E-value=18 Score=32.97 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
.+.+-.+|.+.++++.|+.+.+.+ ...|+ +.-+.--.-.|.+.|.+..|..-++..++..|+++.+-..-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 344666778888888888888877 45554 44566677778889999999999999999888887765443
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.35 E-value=6 Score=27.74 Aligned_cols=45 Identities=4% Similarity=-0.014 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhH---HHHHHHHHhcCCchHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSY---VLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~a~~~ 556 (574)
..++.++|+..++++++..++.+.-+ -.|+.+|...|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888766655444 4556667788888877765
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.82 E-value=9.7 Score=26.74 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=20.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~ 453 (574)
..+.++|+..|++..+.-..+.. .++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555543222211 144455555555555555443
No 382
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=61 Score=29.16 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 046956 500 ASAWGALLGACKLYSDIE-LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 569 (574)
...|..--......|+.. .-+++.+.++..+..+-.++..--+++...+.|++-+.+..++.+.+++.++
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 333433333333344444 4455555555555555555555555555555666655555555555555443
No 383
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.14 E-value=57 Score=32.87 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=63.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH------------HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--C----CC------
Q 046956 410 HGHGRQAVSLFDRMLSEGLTPDE------------VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--A----IV------ 465 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p~~------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~------ 465 (574)
...+++|...|.-.... ..|+. .+...+...|...|+.+.|..+.++..-.+ - +.
T Consensus 251 s~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44567777777666654 23332 234455556777788877777777654210 0 11
Q ss_pred -------CcHHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 046956 466 -------PSPEHYACM---VDLLGRTGHLKSAYELLNSM-PVEP--HASAWGALLGAC-KLYSDIELGELVANRLF 527 (574)
Q Consensus 466 -------p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~ 527 (574)
-|..-|.++ +..+.+.|-+..|.++.+.+ ...| |+.....++..| .+..+++--+++++...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122223322 33445667777777766655 3344 344444555443 45666777777666653
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.16 E-value=23 Score=32.00 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc---
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK--- 183 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 183 (574)
=|.+++..|+|.+++.+.-+.-+.--+.-....-.-|-.|.+.+....+.++-......--.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 46888999999999887666554322222233333344567888887777777766654222233346666665543
Q ss_pred --CCChHHHHHHH
Q 046956 184 --RKEISCARKVF 194 (574)
Q Consensus 184 --~g~~~~A~~~~ 194 (574)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666665
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.74 E-value=24 Score=27.46 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
+..+-++......+.|++.....-+.+|.+.+++..|.++|+.++. +..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 3444556666667889999999999999999999999999998887 4444444566554
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=47 Score=29.38 Aligned_cols=117 Identities=11% Similarity=0.022 Sum_probs=73.3
Q ss_pred hHhcCCHHHHHHHHhhCC--CCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 046956 376 NAKCGNMDRAAELFETMP--NRDVV-SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a 451 (574)
|....+++.|+..|.+.. .|++. -|+.-+.++.+.++++.+..--.+.++ +.||.+ ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445567778888777655 46653 455667777778888888777777766 677765 455566667777888888
Q ss_pred HHHHHHhHhh---cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 452 WRFFEAMQNV---YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 452 ~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
+..+.++... ..+++.......|..+-...=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888777432 133344455555554444444444555555544
No 387
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.53 E-value=78 Score=29.38 Aligned_cols=48 Identities=13% Similarity=-0.043 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC---------------CchHHHHHHHHHHhCCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATAD---------------RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~ 565 (574)
+.++|...|+++-+... ......++ .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 56666666666666544 44444444 444444 55556666665555443
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.72 E-value=9.3 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=16.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKN 325 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~ 325 (574)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566677777777777777666543
No 389
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.37 E-value=8.2 Score=33.54 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=36.7
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..+.|+.+.|.+++.++ ..-| ....|-.+...-.+.|+++.|.+.|++.++++|.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 44566666666666665 3333 34456666666667777777777777777777665443
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.22 E-value=45 Score=30.23 Aligned_cols=56 Identities=16% Similarity=-0.047 Sum_probs=26.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHH
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 357 (574)
|.+++..++|.+++...-+--+.--+....+...-|-.|++.+.+..+..+-..-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56677777777776655443322111122233333334445555544444444443
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.06 E-value=42 Score=25.31 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=52.9
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.....++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|.. .+.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 44567888888888887653 233333344556778999999955555555688888876654 478888888888887
Q ss_pred cCCCCc
Q 046956 228 MPERSN 233 (574)
Q Consensus 228 ~~~~~~ 233 (574)
+...+.
T Consensus 95 la~~g~ 100 (116)
T PF09477_consen 95 LASSGS 100 (116)
T ss_dssp HCT-SS
T ss_pred HHhCCC
Confidence 765433
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.44 E-value=51 Score=26.01 Aligned_cols=42 Identities=7% Similarity=-0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhh--CCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 518 LGELVANRLFEL--EPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 518 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
.+..+|+.+... .-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677788877764 456677888888888888888888888865
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.26 E-value=35 Score=25.17 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=16.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q 046956 507 LGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.......|++++|...+++++++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556677777777777777765
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.14 E-value=45 Score=26.98 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHhccCC-cHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 135 DKYTFPLVIKACSHVLS-VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
+..+|.+++++.+.... --.+..+|..+.+.+.+.+..-|..+|..+.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44456666666554444 33445556666555556666666666655544
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.61 E-value=1.6e+02 Score=30.63 Aligned_cols=57 Identities=5% Similarity=0.012 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhcCCCh---HHHHHHhhccCCC--ChhhHHHHHHHHHhCCCchHHHHHHHHh
Q 046956 69 HSLVAHFISLCHSLATPL---SYSTAVFNRIVNP--NTFLWNTLLKGYSQNSRFIEVFTIFVRL 127 (574)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~---~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m 127 (574)
..+...|+ ....+.... +.+.+++..-++. ++.-|+ .+..+.-.|.++.|.+++...
T Consensus 113 ~~v~~~Ll-~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 113 GPVPEQLL-DWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHH-HHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred CchHHHHH-HHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 34566777 666443322 2222233222222 244565 788888899999999998543
No 396
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.96 E-value=1.4e+02 Score=29.66 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=70.7
Q ss_pred HHHhHhcCCHHHHHHHHhhCC---CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH-
Q 046956 373 VDMNAKCGNMDRAAELFETMP---NR---------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLS-------EGLTPDE- 432 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~- 432 (574)
.+.+.-.|++.+|.+++.... .+ .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344555688888888876543 11 123467777777777777777777776653 4655543
Q ss_pred ----------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh
Q 046956 433 ----------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480 (574)
Q Consensus 433 ----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 480 (574)
.+|+. .-.|...|++-.|.+.|.+... .+..++..|..+..+|..
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 12332 2347788999999999999987 566777888888888753
No 397
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=66.60 E-value=28 Score=31.45 Aligned_cols=57 Identities=25% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++...++++.|....++.+.++|.++.-...-+-+|.+.|.+.-|.+-++...+.-
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 567778888888888888888888888888888888888888888888887765544
No 398
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=66.36 E-value=1.4e+02 Score=29.44 Aligned_cols=172 Identities=8% Similarity=-0.026 Sum_probs=89.1
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHH
Q 046956 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAK 222 (574)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 222 (574)
|.++...| +.+...+-...... ++...+.....++....+......+.+.+..++.......+.++.+.+...-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 45555555 45555555554332 233333333333333333333555556665666667777777877777766666
Q ss_pred HHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHH
Q 046956 223 TVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALI 302 (574)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 302 (574)
.+...+...++......+.++...+. +-...+..-+..++..+-..-+.+.+..++.+..-.+..-....|...-..-+
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~ 199 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAAL 199 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHH
Confidence 66665555565555555555554331 11222222333455555555566666555543333333334445555555556
Q ss_pred HHHHhCCCchHHHHHHHH
Q 046956 303 SGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 303 ~~~~~~~~~~~A~~~~~~ 320 (574)
.+....|. .+|...+..
T Consensus 200 ~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 200 EAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHcCC-HhHHHHHHH
Confidence 66666665 555555444
No 399
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.06 E-value=24 Score=32.19 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=33.4
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 479 GRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
.+.|+.++|.++|+.+ ...|+ +..+..+......++++-+|-++|-+++.+.|.+..++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4556666666666654 33343 3333334444444556666666666666666666555443
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.06 E-value=32 Score=34.56 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh-hcCCHHHHHHHHHhC-CCCCC--HHH
Q 046956 429 TPDEVAFTIVLTACSHV--GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG-RTGHLKSAYELLNSM-PVEPH--ASA 502 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p~--~~~ 502 (574)
-|+..+...++.-.... ...+-+..++-.|.. -..|--...| ++..|. -.|+...|.+.+..+ ...|. ...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555554444322211 123334444444443 3344333333 233444 478999999988776 33342 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+.....+.|..-.|-.++.+.+.++-..|-.+..++.+|....+.+.|.+.|+...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 344556666777778899999999999888899999999999999999999999998876553
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.95 E-value=25 Score=25.33 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 221 (574)
+.++++.+.+.|+ .+..-...+-..-...|+.+.|..+++.+. +....|..++.++-..|+-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4455666665553 122222222222224566777777777776 6666666677766666654444
No 402
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.27 E-value=1.2e+02 Score=27.77 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-HHHHH
Q 046956 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL-LSNIY 544 (574)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~ 544 (574)
-++.....++..|.+.|++.+|...|-... .|+...+..++ +....+..|.+...+.. .+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll---------------~~~~~~~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLL---------------EEWSTKGYPSEADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHH---------------HHHHHHTSS--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHH---------------HHHHHhcCCcchhHHHHHHHHHH
Confidence 356778888899999999998888776542 11111111111 12222334444444443 23347
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 046956 545 ATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~ 563 (574)
...|+...|...++...++
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 7788888888888777765
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.85 E-value=1.2e+02 Score=27.72 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=57.0
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCcc-hHHHHHHHHHH----hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC
Q 046956 322 CSKNVQPDEFILVSLMSACSQVGNLD-LSNWVDSYLSR----SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396 (574)
Q Consensus 322 ~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (574)
.+.+.+.|......++..+...+.-+ .-..+.+.+++ .+.+...+.....++..|.+.|++.+|+..|-.-..++
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 33455556555555555544333221 12222232222 22333334478889999999999999888775544333
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF-TIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
...+..++......|. +.+...| ...+--|.-.++...|...++...+.
T Consensus 121 ~~~~~~ll~~~~~~~~----------------~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGY----------------PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHTS----------------S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----------------CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3332222222222222 2222222 22222355567888888877766653
No 404
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=63.69 E-value=33 Score=24.73 Aligned_cols=63 Identities=5% Similarity=0.113 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHH
Q 046956 53 LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120 (574)
Q Consensus 53 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 120 (574)
+..++.++++.|+- +..-.. .+.+...+.+.|.++++-++..+..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~e----~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMIE----EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHHH----HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45688899998852 222222 4445667789999999999999999999999999888765444
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.95 E-value=14 Score=36.08 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=48.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAF-TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 485 (574)
...+.++.|..++.+.++ +.||...| ..-..++.+.+++..|+.=+.++++. .|+ ...|..=+.++.+.+.+.
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHHH
Confidence 344566666666666666 45554433 22224566666666666655555542 122 222222233444445555
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHH
Q 046956 486 SAYELLNSM-PVEPHASAWGALL 507 (574)
Q Consensus 486 ~A~~~~~~~-~~~p~~~~~~~l~ 507 (574)
+|...|+.. ...|+..-....+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHH
Confidence 666655555 4455554444444
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.53 E-value=38 Score=29.11 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 495 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
...|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467777777777777777777777777777777777
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.19 E-value=84 Score=25.47 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=64.1
Q ss_pred HHHhCCCCch--hHHHHHHHHHHhcCCChHHHHHHhhccC---------CCChhhHHHHHHHHHhCCC-chHHHHHHHHh
Q 046956 60 IIKKGLEQDH--SLVAHFISLCHSLATPLSYSTAVFNRIV---------NPNTFLWNTLLKGYSQNSR-FIEVFTIFVRL 127 (574)
Q Consensus 60 ~~~~g~~~~~--~~~~~ll~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m 127 (574)
+.+.+..++. ...|.++ .-.+..++.....++++.+. ..+..+|..++.+.++..- ---+..+|..|
T Consensus 28 ~~~~~~~~~~k~~fiN~iL-~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCIL-NHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhhcccChhHHHHHHHHHH-HHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4555554443 3445566 44456677777777776663 3456689999999977776 44578889999
Q ss_pred HhCCCCCCcchHHHHHHHHhcc
Q 046956 128 IREEAVPDKYTFPLVIKACSHV 149 (574)
Q Consensus 128 ~~~~~~~~~~~~~~ll~~~~~~ 149 (574)
.+.+.+++..-|..+++++.+-
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 9888999999999999988654
No 408
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.92 E-value=16 Score=23.53 Aligned_cols=30 Identities=7% Similarity=-0.165 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.++.++-.+.+.|++++|.+..+.+.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 456778889999999999999999886543
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.08 E-value=1.6e+02 Score=28.41 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=57.0
Q ss_pred cHHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCC-----CCc
Q 046956 467 SPEHYACM---VDLLGRTGHLKSAYELLNSM-PVEP--HASAWGALLGAC-KLYSDIELGELVANRLFELEP-----QNA 534 (574)
Q Consensus 467 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p-----~~~ 534 (574)
|...|.++ +..+.+.|-+..|.++.+-+ ...| |+......+..| .+.++++--+.+.+....... .-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44444433 45667788888888777766 4444 333344444443 567777777777776555211 134
Q ss_pred hhHHHHHHHHHhcCCc---------------hHHHHHHHHHH
Q 046956 535 GSYVLLSNIYATADRW---------------LDVCLVRSKMK 561 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~---------------~~a~~~~~~~~ 561 (574)
......+-++...++. ++|...+++..
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 5566666677777776 67777776554
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.88 E-value=57 Score=23.61 Aligned_cols=34 Identities=0% Similarity=-0.113 Sum_probs=15.2
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 186 (574)
..|+.+.|.+++..+. .| +..|...++++-..|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 3345555555555544 33 2234444444444444
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.02 E-value=37 Score=29.19 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555544443
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.83 E-value=85 Score=24.76 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhh
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 391 (574)
+.+..+|..|...++....+..|...+..+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 388889999988888877777888889999999999999988864
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.40 E-value=50 Score=25.19 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578899999999999999999998876
No 414
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.15 E-value=25 Score=32.25 Aligned_cols=80 Identities=6% Similarity=0.076 Sum_probs=54.5
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGA-LLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
.+..|+..|...+.-..+.|.+.+.-.++.++ ...| |+..|-. .-.-+...++++.+..++.+.++.+|++|.+|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 45556666766666666667777777777666 3444 3444433 2234567889999999999999999999988765
Q ss_pred HHH
Q 046956 540 LSN 542 (574)
Q Consensus 540 l~~ 542 (574)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 443
No 415
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.07 E-value=1.1e+02 Score=27.01 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=11.3
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 046956 404 IKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~ 424 (574)
|......|+.++|++...++.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 444455566666665555543
No 416
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.59 E-value=1.6e+02 Score=31.65 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=90.7
Q ss_pred HHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046956 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 453 (574)
.....+|+++.|.+.-.++. |..+|..|+.....+|+.+-|+..|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988877766 455899999999999999999999988664 3334344666788888776
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+.+.+..+ .|.... ...-.-.|+.++-.++++..+..|- .| .....+|.-++|.++.++.-..
T Consensus 720 m~~iae~r----~D~~~~---~qnalYl~dv~ervkIl~n~g~~~l--ay----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATGQ---FQNALYLGDVKERVKILENGGQLPL--AY----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHhh----hhhHHH---HHHHHHhccHHHHHHHHHhcCcccH--HH----HHHhhcCcHHHHHHHHHhhccc
Confidence 66655432 222111 1112246899999999998864442 22 1234578888999998887763
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.01 E-value=1.8e+02 Score=27.27 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHH-HHHcCChHHHHHHH
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--------RDVVSYCSMIKG-LSIHGHGRQAVSLF 420 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~-~~~~~~~~~a~~~~ 420 (574)
.+..+...+...+.............|++.|+.+.|.+.+.+..+ -|+..+.+-+.. |..+.-..+-++-.
T Consensus 88 d~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ieka 167 (393)
T KOG0687|consen 88 DEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKA 167 (393)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence 333444444322333333677788899999999999998876543 344444443322 33333345556666
Q ss_pred HHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 421 DRMLSEGLTPDEV----AFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 421 ~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
+.+.+.|..-+.. +|..+- |....++.+|-.+|-+....
T Consensus 168 k~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 168 KSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 6677777554432 444433 44557888888888877653
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.29 E-value=2.8e+02 Score=29.28 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHhHhcCCHHHHHHHHhh--CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---c
Q 046956 372 LVDMNAKCGNMDRAAELFET--MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSH---V 445 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~---~ 445 (574)
....+.-+|+++.|.+++-. ....|.+.+...+.-|.-.+-.+... ..+.... -.|....+..|+..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 34555667888888888877 22334444444443332211111111 2222211 01112456677776654 4
Q ss_pred CcHHHHHHHHHHhHh
Q 046956 446 GLVEDGWRFFEAMQN 460 (574)
Q Consensus 446 g~~~~a~~~~~~~~~ 460 (574)
.+..+|.++|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 678888888877664
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.18 E-value=24 Score=30.83 Aligned_cols=57 Identities=9% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
...+.++.+.+.+++.++.. -.+-....|-.+...-.+.|+++.|.+.+++. ..+|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34567888888888888875 34445677878888888888998888888776 55554
No 420
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.54 E-value=1.6e+02 Score=26.21 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=10.2
Q ss_pred hccCcHHHHHHHHHHhHh
Q 046956 443 SHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~ 460 (574)
...+++.+|+.+|++...
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666666665554
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.41 E-value=63 Score=31.45 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=26.0
Q ss_pred HHHHHHHccCChHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 046956 238 ALIGGLVKIGDLRSARQLFDEMP-----------ERNVVSYTTMIDGYAKVGDMTSARSLFEA 289 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (574)
.|++.++-.||+..|.+.++.+. .-...++.-+.-+|.-.+++.+|.+.|..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555331 12233444555555555666666665544
No 422
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.35 E-value=99 Score=23.58 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 503 WGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34444444455555555555544443
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.34 E-value=2.2e+02 Score=27.60 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD------RDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 324 (574)
.+.-+...|..+|+++.|++.|.+..+ ..+..|..+|..-.-.|+|........+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 455567778888888888888877543 23456777777777788888877777776553
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.78 E-value=2e+02 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV---AFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
+..+-.+.|+..+|.+.++.+.+. .|-.. ....|+.++.....+.+...++-+.-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444567777777777665543 22111 23345556655555555555554443
No 425
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.72 E-value=2.1e+02 Score=27.02 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHH
Q 046956 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 412 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 485 (574)
-.+++..++++....+ .|.+......|.++-. .-+|..-..+|+.+.. +.|++.+-..-.-+..+.--.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 3578888899888887 5888877776665422 2467777777777764 4555433222233344444566
Q ss_pred HHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 486 SAYELLNSMPVEP---H-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 486 ~A~~~~~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
.++...+-+..+| + ...+..-...+.+.|+.++|...|++++.+.++...-.+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 6677776664332 1 223333447788999999999999999999877555433
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.63 E-value=1e+02 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 495 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
..-|++......+.+|.+.+|+..|+++++-....-++....|-.+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4557777777777888888888888888777665544434344333
No 427
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.63 E-value=2.1e+02 Score=29.10 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=13.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
.++.-|.+.++.++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 44555666666666666665554
No 428
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.07 E-value=57 Score=29.48 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=10.2
Q ss_pred HHHHhccCcHHHHHHHHHHhH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~ 459 (574)
...|.+.|++++|.++|+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555443
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.87 E-value=2.5e+02 Score=27.78 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 400 YCSMIKGLSI---HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 400 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
...++.++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3444444443 4789999999999999988887666666655555444
No 430
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.75 E-value=1.7e+02 Score=25.93 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCC
Q 046956 512 LYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..++...|..+++++++++|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 345778999999999999987
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.57 E-value=4e+02 Score=30.01 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSMPV-EPHASAWGALLGA 509 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~ 509 (574)
|..+++.+.+.+-.+.+.++-..+++ .++++ ..+++.+.+.....|.+-+|.+.+-.-+. .-.......++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45556666666666666666666665 33332 24455666666666777766666554321 0112234444444
Q ss_pred HHhcCCHH------------HHHH-HHHHHHhhCCCC-chhHHHHHHHHHhcCCchHHHHHH
Q 046956 510 CKLYSDIE------------LGEL-VANRLFELEPQN-AGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 510 ~~~~~~~~------------~a~~-~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
+...|+++ +... +.+.+-+..|.. +..|..|--.+...++|.+|..++
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 44555443 2222 222222333332 334444444455666776666553
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.48 E-value=38 Score=22.64 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=14.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
-...++.++...|++++|.++++.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455555556666666655555543
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.31 E-value=23 Score=27.94 Aligned_cols=32 Identities=13% Similarity=0.416 Sum_probs=21.9
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 046956 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146 (574)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 146 (574)
..|.-.+|..+|+.|++.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34556677888888888887776 366666543
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.93 E-value=74 Score=22.93 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChH
Q 046956 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219 (574)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 219 (574)
.++..+.+.|+ .+....-..-+...+.+++.++++.++.++..+|..+..++...|...
T Consensus 20 ~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 20 YLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 45555555552 222222333334456667777777777777777777777776666543
No 435
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=2.5e+02 Score=27.22 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
..+.|++.|...+.++.|..+..+.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 3455555666666666666655443
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.75 E-value=90 Score=25.38 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=33.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 317 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
+.+.+.+.|++++..-. .++..+...++.-.|..+++.+.+.++..+.+.+|+.|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L 62 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL 62 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 34455556766655433 34555555666677888888888777777666455433
No 437
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.70 E-value=51 Score=19.13 Aligned_cols=14 Identities=0% Similarity=-0.254 Sum_probs=6.1
Q ss_pred HHHhcCCHHHHHHH
Q 046956 509 ACKLYSDIELGELV 522 (574)
Q Consensus 509 ~~~~~~~~~~a~~~ 522 (574)
.+...|++++|+.+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 33444445555544
No 438
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.66 E-value=19 Score=33.54 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS-AWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
|.++.|++.|...+. .-++....|..-..++.+.++...|++-+... .+.||.. .|..-..+-+..|++++|...+
T Consensus 128 G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 445555555554443 22333344444444445555555554444433 3333322 1222223334455555555555
Q ss_pred HHHHhh
Q 046956 524 NRLFEL 529 (574)
Q Consensus 524 ~~~~~~ 529 (574)
..+.++
T Consensus 206 ~~a~kl 211 (377)
T KOG1308|consen 206 ALACKL 211 (377)
T ss_pred HHHHhc
Confidence 555554
No 439
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.48 E-value=3.7e+02 Score=29.10 Aligned_cols=275 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
+.|...|++++|.++-..-.+.-..++..-.+.|.+.+++..|-+++-++ ...+..+.--+...++.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC-CHHHHHHHHhhCCC-----
Q 046956 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG-NMDRAAELFETMPN----- 394 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~----- 394 (574)
=+-..++|...+=..++..+ +.+..+.-+.... ..+++.+-++.-.+
T Consensus 441 KKL~~lt~~dk~q~~~Lv~W---------------------------Llel~L~~Ln~l~~~de~~~en~~~~~~~~~re 493 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTW---------------------------LLELYLEQLNDLDSTDEEALENWRLEYDEVQRE 493 (911)
T ss_pred HHHhhCChHHHHHHHHHHHH---------------------------HHHHHHHHHhcccccChhHHHHHHHHHHHHHHH
Q ss_pred --------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 395 --------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 395 --------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
.+-..+.+....+..+|+.+....+-.-|.. |..++.-+.+.+.+++|++++..-..
T Consensus 494 ~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~------ 558 (911)
T KOG2034|consen 494 FSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRN------ 558 (911)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccc------
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh-CCCCchhHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY---SDIELGELVANRLFEL-EPQNAGSYVLLSN 542 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~ 542 (574)
.-......-........+-...+...+..-.+...-.++..+... .....+...++-.... .-.++..++.+..
T Consensus 559 --~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~ 636 (911)
T KOG2034|consen 559 --PELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLH 636 (911)
T ss_pred --hhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHH
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 046956 543 IYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|....+-+.-..+-..+...+
T Consensus 637 lya~~~~~~ll~~le~~~~~~~ 658 (911)
T KOG2034|consen 637 LYAKHERDDLLLYLEIIKFMKS 658 (911)
T ss_pred HhhcCCccchHHHHHHHhhccc
No 440
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.26 E-value=2.4e+02 Score=26.75 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh---cCCHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR---TGHLKSAYE 489 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~ 489 (574)
.+.-+.+++++++.+ +.+......++..+.+..+.+...+.++++.. ..+-+...|...++.... .-.+++..+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 355667788877762 23344667777777888888888888888886 334456677766665543 224555555
Q ss_pred HHHhC-------CCC--------C--CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 490 LLNSM-------PVE--------P--HASA---WGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 490 ~~~~~-------~~~--------p--~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
+|.+. ... + +... +..+...+...|-.+.|..+++-+++.+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 54433 111 1 1112 2222244578999999999999999974
No 441
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.44 E-value=1.9e+02 Score=31.99 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH----H---hhcC---CHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL----L---GRTG---HLKSAYELLNSMPVEPH-ASAWGALLGA 509 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~----~---~~~g---~~~~A~~~~~~~~~~p~-~~~~~~l~~~ 509 (574)
++.....++.|...|+++.. .++-..+.|.+..++ + ...| .+++|+.-|+.+...|. +.-|..-.-.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRE--SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhh--cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 34444555555555555554 333333333332221 1 1122 46788888888843333 3344444456
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
|.+.|++++-++.+.-+++..|+.|.+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 788899999999999999988777653
No 442
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=48.33 E-value=2.5e+02 Score=26.68 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=66.5
Q ss_pred ChHHHHHHHhcCCC---CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHH-HHHHHHH
Q 046956 248 DLRSARQLFDEMPE---RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK-IFSDMCS 323 (574)
Q Consensus 248 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~ 323 (574)
.++.|...+.+-.. .-.....-+.+.+++.++-+.+..+-+.+..-......++..++-...-.+...+ +++.+..
T Consensus 147 yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~ 226 (340)
T PF12069_consen 147 YYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQ 226 (340)
T ss_pred hHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Confidence 35566666653211 1122334456778888777776666666655444455555555554444444333 4444433
Q ss_pred CCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh
Q 046956 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365 (574)
Q Consensus 324 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (574)
. ||......++++.+...........+..+.......+.
T Consensus 227 ~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~ 265 (340)
T PF12069_consen 227 A---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHP 265 (340)
T ss_pred C---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCCh
Confidence 3 88888888999988877666666656666655443333
No 443
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.23 E-value=2.2e+02 Score=26.09 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=73.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCcHHHHHHHHHH---hHhhcCCCCcHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEV-------AFTIVLTACSHVGLVEDGWRFFEA---MQNVYAIVPSPEHYACM 474 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~p~~~~~~~l 474 (574)
+-..+.+++++|+..+.+....|+..+.. +...+...|...|++..-.+.... ....+.-+.......++
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 33455677888888888888877766643 344556667777765543333222 22211112222333334
Q ss_pred HHHHhh-cCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hh--CCCCchhHHH
Q 046956 475 VDLLGR-TGHLKSAYELLNSM----PVEP----HASAWGALLGACKLYSDIELGELVANRLF----EL--EPQNAGSYVL 539 (574)
Q Consensus 475 ~~~~~~-~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~--~p~~~~~~~~ 539 (574)
+..+-. ...++.-+++.... ..+. ....-..++..+.+.|.+.+|+....-++ +. .|+-...+..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 333321 22333333333222 0000 01111223455666677766665444332 22 2444555555
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 046956 540 LSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~ 559 (574)
=..+|....+..++..-+-.
T Consensus 171 ESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHH
Confidence 56666666665555554433
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=48.02 E-value=1.3e+02 Score=23.40 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCchhHH----HHHHHHHhcCCchHHHHHHHHHHh
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFE-------LEPQNAGSYV----LLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
|...+..|..++...|++++++.-.++++. ++.+....|. .-+.++...|+.++|...|+...+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 445
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.94 E-value=1.1e+02 Score=22.41 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=21.9
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+++.++.+|+|......++..+...|++++|.+.+-++.+.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3444455555555555555555555555555555555554443
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.93 E-value=30 Score=31.61 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=38.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
..+.|+.++|..+|+.+.. --+.++.....+.......++.-+|-.++-++ .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 4577889999999998875 33334666666666666667777787777665 55553
No 447
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.91 E-value=1.4e+02 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=29.4
Q ss_pred HHHHHHHHHhh--CCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 046956 519 GELVANRLFEL--EPQNAGSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 519 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
...+|..+... .-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45567666654 45556677788888888888888888875
No 448
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.69 E-value=78 Score=31.03 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 489 ELLNSMPVEPHA--SAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 489 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
.+|...+.+|.+ .++...+..+.+.+++..|-.+.++++++.|..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344455556643 355666778889999999999999999998864
No 449
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.43 E-value=2.5e+02 Score=26.56 Aligned_cols=119 Identities=8% Similarity=-0.024 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL---YSDIELGELV 522 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~ 522 (574)
.+.-+.+++++.+ ..+.+......++..+.+..+.++..+-++++ ...| +...|...+..... .-.++.....
T Consensus 47 ~E~klsilerAL~--~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALK--HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4566788899887 34455677778888888888888888888887 3344 57788888855543 3357788888
Q ss_pred HHHHHhhC---CCC---------------chhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 046956 523 ANRLFELE---PQN---------------AGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568 (574)
Q Consensus 523 ~~~~~~~~---p~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (574)
|.+.++.- ... ..++..+.......|-.+.|..+++-+.+-++-..
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 87777631 111 12445566667899999999999999998777433
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.41 E-value=37 Score=31.22 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 335 (574)
-|+.-|....+.|++++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466888888899999999999999988887655555543
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.07 E-value=1.7e+02 Score=27.17 Aligned_cols=85 Identities=7% Similarity=0.071 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHH----------hcCChHHHHHHH
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYA----------SVGDLVEAKTVF 225 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~a~~~~ 225 (574)
.++++.+.+.++.|.-..+.-+.-++.+.=.+.....+++.+..... -+..|+..|+ -.|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 56888888889999999888888888888889999999998875221 1444444444 357777777777
Q ss_pred hhcCCCCcchHHHHHH
Q 046956 226 DLMPERSNVSWNALIG 241 (574)
Q Consensus 226 ~~~~~~~~~~~~~l~~ 241 (574)
+.-..-|......+..
T Consensus 342 Q~yp~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVAD 357 (370)
T ss_pred hcCCCCCHHHHHHHHH
Confidence 6655555444444433
No 452
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=47.01 E-value=86 Score=22.93 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCc
Q 046956 53 LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRF 117 (574)
Q Consensus 53 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 117 (574)
...+...+++.|+-. ..-+. .+.+..-+.+.+.++++-++..++.+|..+..++-..|..
T Consensus 22 ~~~v~~~L~~~gvlt-~~~~~----~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILT-DSMAE----SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCC-HHHHH----HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 456888888888532 22232 3445667789999999999999999999999999765543
No 453
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.89 E-value=55 Score=18.46 Aligned_cols=27 Identities=7% Similarity=0.337 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.++.|..+|++.+...|+ +..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 467888888888887765 666655543
No 454
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.61 E-value=3.1e+02 Score=27.01 Aligned_cols=69 Identities=7% Similarity=0.026 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhcCCChHHHHHHhhccCCCChh--hHHHHHHHHHhCCCchHHHHHH
Q 046956 55 QVHSHIIKKGLEQDHSL--VAHFISLCHSLATPLSYSTAVFNRIVNPNTF--LWNTLLKGYSQNSRFIEVFTIF 124 (574)
Q Consensus 55 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~ 124 (574)
.+...+++.|..++... ..+.+ ...++.|+.+-..-+++....++.. ...+.+...+..|+.+.+..++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPI-KLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 34455555665544322 22344 4455666666665555544333221 1122344445566665544443
No 455
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.14 E-value=3e+02 Score=26.76 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCC
Q 046956 366 AHVIAALVDMNAKCGNMDRAAELFETMPN------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE---------GLTP 430 (574)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~p 430 (574)
...+..+.+.|..+|+++.|.+.|.+... .-+..|-.+|..-...|++........+.... .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 33677788888889999999988888653 23345666666666667777666666655542 1233
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
-..++..+...+. +++..|.+.|-...
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 3344555544433 36666666554443
No 456
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.74 E-value=51 Score=19.43 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+|..|+++-...+++++|..=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888877776543
No 457
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.37 E-value=2.6e+02 Score=25.83 Aligned_cols=110 Identities=9% Similarity=0.048 Sum_probs=58.0
Q ss_pred CHHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----C--cH
Q 046956 381 NMDRAAELFETMPN-RDVVSYCSMIKGLSI----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV-----G--LV 448 (574)
Q Consensus 381 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g--~~ 448 (574)
+..+|.++|....+ ........|...|.. ..+..+|..+|++..+.|..+...+...+...|... - +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 45555555554432 223333334444443 236777888888887777444322233333333332 1 23
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh----hcCCHHHHHHHHHhC
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLG----RTGHLKSAYELLNSM 494 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~ 494 (574)
..|...+.++... + +......+...|. -..+.++|...|++.
T Consensus 172 ~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 172 KKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred HhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 3677777777664 3 3344444444443 234777888888777
No 458
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.02 E-value=79 Score=19.76 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=19.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 439 (574)
+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4555566666666666666666666555544
No 459
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.94 E-value=8.5e+02 Score=31.64 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=13.8
Q ss_pred HHHHHhcCChHHHHHHHhhcC
Q 046956 209 IVGYASVGDLVEAKTVFDLMP 229 (574)
Q Consensus 209 i~~~~~~g~~~~a~~~~~~~~ 229 (574)
...|.+.|.+++|..+|++..
T Consensus 2489 a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2489 ALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHhhhHHHHhhHHHHHH
Confidence 345666777777777777654
No 460
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.72 E-value=3.5e+02 Score=27.16 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=66.5
Q ss_pred CCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHHH
Q 046956 429 TPDEVAF-TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL---GRTGHLKSAYELLNSM--PVEPHASA 502 (574)
Q Consensus 429 ~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~~~~ 502 (574)
.|+..|+ +.++.-+.+.|-..+|...+..+.. .-+|+...|..++..- ..+| ...+.++++.+ ....|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 5555544 4556666777777788888877776 4555666676666542 2333 66677777766 23367777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC
Q 046956 503 WGALLGACKLYSDIELGELVANRLFEL-EPQN 533 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~ 533 (574)
|...+..-..+|..+.+-.++.++.+. +|..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 777777667788888777777777664 4543
No 461
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.71 E-value=1.3e+02 Score=29.49 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV----------------AFTIVLTACSHVGLVEDGWRFFEAMQNVY 462 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 462 (574)
....++.++....+..+.++..+ .|..|+.. +...|++.++-.|++..|+++++.+.-..
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~----~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEK----RGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhh----ccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 33344555565555554444333 33455542 23445667778899999999887653210
Q ss_pred -----CC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHH-------
Q 046956 463 -----AI-VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG--ACKLYSDIELGELVANRLF------- 527 (574)
Q Consensus 463 -----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~------- 527 (574)
.+ .-...++..++-+|...+++.+|.+.|...- .+-.-.. ...+..+++...+..++|.
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL------~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~ 226 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL------LYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICL 226 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHH
Confidence 11 1134567777888888999999999888642 1111111 1223334444444444443
Q ss_pred hhCCC--CchhHHHHHHHH------HhcCCchHHHHHHHHHHhCCCccC
Q 046956 528 ELEPQ--NAGSYVLLSNIY------ATADRWLDVCLVRSKMKERGLRKI 568 (574)
Q Consensus 528 ~~~p~--~~~~~~~l~~~~------~~~g~~~~a~~~~~~~~~~~~~~~ 568 (574)
.+.|. +-.+...+-+-| .+.|+.+.-.++|....-+=+.|.
T Consensus 227 ~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~ 275 (404)
T PF10255_consen 227 SLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPV 275 (404)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCC
Confidence 34564 333333332222 345666666666666555444443
No 462
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.28 E-value=1.5e+02 Score=22.60 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
..+...|++++|...=.....||...|-++-. .+.|-.+++...+.++...|
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455566666633333333455555544432 24455555555555555443
No 463
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.82 E-value=54 Score=30.20 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
-|+..|..-.+.||+++|+.++++..+.|..--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4567888888888888888888888888865544555443
No 464
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.27 E-value=3.4e+02 Score=26.52 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCHhHHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046956 293 RDVVAWSALISGYAQ---NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345 (574)
Q Consensus 293 ~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 345 (574)
++-..+..+++++.+ ..+.+.|+-++.+|.+.|-.|-...-..+.-++..-|.
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 454556667777754 57899999999999999877766555555555555443
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.11 E-value=2.8e+02 Score=25.86 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHH----------cCCChHHH
Q 046956 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG----------KRKEISCA 190 (574)
Q Consensus 121 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----------~~g~~~~A 190 (574)
.++|+.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+... ..-+..|+..|+ -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888889999999999998888888888999999999998753 222555665554 35899999
Q ss_pred HHHHccCCCCChhhHHHHHH
Q 046956 191 RKVFDEMPERNVVSWTAMIV 210 (574)
Q Consensus 191 ~~~~~~~~~~~~~~~~~li~ 210 (574)
.++++.-+.-|....-.+..
T Consensus 338 mkLLQ~yp~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 338 MKLLQNYPTTDISKMLAVAD 357 (370)
T ss_pred HHHHhcCCCCCHHHHHHHHH
Confidence 99998877666554443333
No 466
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=41.34 E-value=1.6e+02 Score=22.55 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=54.0
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 046956 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLYSDI 516 (574)
Q Consensus 440 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~ 516 (574)
..+.+.|+.-+|+++.+++...+|-..+..... ..+|. +|.+. ..+||...-. .
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh------~~QG~------if~~lA~~ten~d~k~~y-----------L 60 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLH------RLQGT------IFYKLAKKTENPDVKFRY-----------L 60 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHH------HHHhH------HHHHHHHhccCchHHHHH-----------H
Confidence 456777888888888888887644444321111 11121 11111 1134332111 2
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
-.+++.+.+...+.|+.+..++.|+.-+.....|+++..--++
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2466777888888888877777777766555566665554443
No 467
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.27 E-value=2.6e+02 Score=25.00 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhH
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-HVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 459 (574)
++..+-+.|+++++...++++...+...+..-.+.+..+|- ..|....+++.+....
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34445556666666666666666554444433333333332 1233334444444443
No 468
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.22 E-value=2e+02 Score=30.96 Aligned_cols=161 Identities=11% Similarity=0.024 Sum_probs=101.0
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVED 450 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 450 (574)
+++..+.+.|-.+-|+.+.+.-.. -.......|+.+.|++.-.++ -+..+|..|...-...|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~t--------RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERT--------RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcch--------heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHH
Confidence 455555666666666555443221 122334568888887765442 355688889888888899988
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
|+..|+.... |..|.-.|.-.|+.++-.++-+.++.+.|..... ....-.|+.++-.++++..-
T Consensus 691 aEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~---qnalYl~dv~ervkIl~n~g--- 754 (1202)
T KOG0292|consen 691 AEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQF---QNALYLGDVKERVKILENGG--- 754 (1202)
T ss_pred HHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHH---HHHHHhccHHHHHHHHHhcC---
Confidence 8888887653 4556667778888888888777765555543321 22234677777766665432
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.-+-+|.. -...|.-++|.++.++..++.+.
T Consensus 755 -~~~laylt----a~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 755 -QLPLAYLT----AAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred -cccHHHHH----HhhcCcHHHHHHHHHhhccccCC
Confidence 22323322 24578888899998888775543
No 469
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.68 E-value=1.4e+02 Score=21.60 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=43.0
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC
Q 046956 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV 97 (574)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~ 97 (574)
..+-+.+....+-.++++.....|+..|+.++-.++ .+..-+=..+...+++..+.
T Consensus 15 ~~~~rk~~Ls~eE~EL~ELa~~AGv~~dp~VFriil-dLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 15 YSLRRKKVLSAEEVELYELAQLAGVPMDPEVFRIIL-DLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCcChHHHHHHH-HHHHcCCCHHHHHHHHHHHH
Confidence 334445554445568999999999999999999999 88877777777777777663
No 470
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.55 E-value=1.9e+02 Score=23.17 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 046956 429 TPDEVAFTIVLTACSHVG---LVEDGWRFFEAMQNVYAIV-PSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA 500 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 500 (574)
.++..+--.+..++.+.. +..+.+.++++..+. ..+ -..+....|.-++.+.|+++.++++.+.+ ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 444444445555555543 455667777777652 222 12344445666777888888888877766 444443
No 471
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.04 E-value=59 Score=29.95 Aligned_cols=68 Identities=6% Similarity=-0.106 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-HHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL-LSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
-.|+..|...+.-..+.|.+.+.-.++.++++.+|.|...|.. -..-|...++.+.++.+|.+-..-+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3467778777766677788999999999999999999998876 4555788999999999987655444
No 472
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=39.86 E-value=1.3e+02 Score=21.75 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHH
Q 046956 53 LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120 (574)
Q Consensus 53 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 120 (574)
...+.+++++.|+ .+..-.. .+-++..+-+.|.++++.++..+..+|.++..++-..|..+-|
T Consensus 16 v~~ild~L~~~gv-lt~~~~e----~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGV-LTLDEEE----KVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCC-CCHHHHH----HHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 4568888888884 2333333 3345677789999999999999999999999988776654443
No 473
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.63 E-value=2e+02 Score=25.97 Aligned_cols=51 Identities=6% Similarity=-0.203 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC------CchhHHHHHHHHHhcCCchHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQ------NAGSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.-|...|++++|.++++.+...... ...+...+..++...|+.++...+-=
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455555555555555555433111 12234445555566666655555433
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.62 E-value=36 Score=26.89 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=23.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
...|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3446667799999999999988876 5555543
No 475
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.46 E-value=2.8e+02 Score=28.02 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=51.8
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCC--CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc
Q 046956 60 IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN--PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137 (574)
Q Consensus 60 ~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 137 (574)
+.+.|+..+......+. . ...|++..|+.++++... .+..++..+ . ++. |.. +..
T Consensus 193 ~~~Egi~~e~eAL~~Ia-~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V-------------~----~~l--g~~-~~~ 249 (484)
T PRK14956 193 CKIENVQYDQEGLFWIA-K--KGDGSVRDMLSFMEQAIVFTDSKLTGVKI-------------R----KMI--GYH-GIE 249 (484)
T ss_pred HHHcCCCCCHHHHHHHH-H--HcCChHHHHHHHHHHHHHhCCCCcCHHHH-------------H----HHh--CCC-CHH
Confidence 34457766666665555 3 346888888888876421 111111111 1 111 332 555
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcc
Q 046956 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172 (574)
Q Consensus 138 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 172 (574)
.+..++.++...+....+..+++.+.+.|..|...
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 56666666665555677888888888888766543
No 476
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=39.12 E-value=5.9e+02 Score=28.43 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCcH--------HHHHHHHHHHh
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVPSP--------EHYACMVDLLG 479 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~l~~~~~ 479 (574)
|..---.+++++..+ .++..+.....-+.+..|.++-+.+....+.+.. .++.+. ..|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 333344455555544 2233333334444567788877776666555321 111111 11222234445
Q ss_pred hcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCCchHHH
Q 046956 480 RTGHLKSAYELLNSMPVEPHAS--AWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~ 554 (574)
....++++.+.+...+ |... .+..++.-+...++.+.-..+.+.+....+.. ......-+++|.-..+|++|.
T Consensus 747 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (932)
T PRK13184 747 NKEDYEKAFKHLDNTD--PTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAY 824 (932)
T ss_pred ccccHHHHHhhhhhCC--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHH
Confidence 5556666666555542 2222 22223333344455554444444443332221 223445566777788888888
Q ss_pred HHHHHHHhC
Q 046956 555 LVRSKMKER 563 (574)
Q Consensus 555 ~~~~~~~~~ 563 (574)
+++......
T Consensus 825 ~~~~~~~~~ 833 (932)
T PRK13184 825 KLLNRYPLD 833 (932)
T ss_pred HHHHhCChh
Confidence 888665443
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.23 E-value=2.5e+02 Score=23.89 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 345566666666666666555 55554444444333
No 478
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.13 E-value=97 Score=21.00 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
+....++.++..+++..-.++++..+.++...|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445566666666666666777777777777663 444555544444443
No 479
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=37.72 E-value=2e+02 Score=22.63 Aligned_cols=60 Identities=18% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG-ALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
..+-.+++.++.-.|..++|.+++...+-.++-...| .++..|....+-++..++-++.+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4556677777788888888888888876555444443 45577777777666666555443
No 480
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=37.72 E-value=1.2e+02 Score=22.06 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 221 (574)
+..+++.+.+.|+ .+....=..-.+....++|..+++.+..++..+|..+..++-..|...-|
T Consensus 16 v~~ild~L~~~gv----lt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGV----LTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 4456666666553 22222222233455566777777776666666776666666555544433
No 481
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=4.5e+02 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+--.|....+.+.|.++++++.+.+|.++-.-.....+....|.-++|+........
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3334556666777777777777777777776666666666777777777766655543
No 482
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=37.49 E-value=3.5e+02 Score=25.30 Aligned_cols=51 Identities=8% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHhHhhcCC
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSH--VG----LVEDGWRFFEAMQNVYAI 464 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~ 464 (574)
++.+.+++.|.+.|++-+..+|.+....... .. ...+|..+|+.|++.+.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 4456777888888887777665543222222 22 345678888888876544
No 483
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.14 E-value=1.2e+02 Score=21.53 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=7.7
Q ss_pred hcCCChHHHHHHhhc
Q 046956 81 SLATPLSYSTAVFNR 95 (574)
Q Consensus 81 ~~~~~~~~A~~~~~~ 95 (574)
++.|+++-...+++.
T Consensus 5 ~~~~~~~~~~~ll~~ 19 (89)
T PF12796_consen 5 AQNGNLEILKFLLEK 19 (89)
T ss_dssp HHTTTHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 345555555555553
No 484
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.89 E-value=2.3e+02 Score=23.07 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCc
Q 046956 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346 (574)
Q Consensus 282 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 346 (574)
++.+.+++..-+-+.--..++..+.+.+++-.|.++++++.+.+...+..|....+..+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 34444444433344455667888888888899999999999988777777777777777766643
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.73 E-value=2.1e+02 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhh
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 391 (574)
+....+|..|...++....+..|...+..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345677888888877777666788888888888999988888763
No 486
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.94 E-value=3e+02 Score=24.16 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhh
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344456677777777777777665
No 487
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.89 E-value=94 Score=21.94 Aligned_cols=37 Identities=11% Similarity=0.363 Sum_probs=29.5
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHH
Q 046956 39 SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI 76 (574)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll 76 (574)
++...|+.|...+.+..+.+.+.|.| +.++...+.|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L~ 72 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKALR 72 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 48889999998889999999999999 55666555544
No 488
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.82 E-value=5.7e+02 Score=27.26 Aligned_cols=499 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC-----CCChhhHHHHHHHHHhC---------CCch--
Q 046956 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV-----NPNTFLWNTLLKGYSQN---------SRFI-- 118 (574)
Q Consensus 55 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~---------g~~~-- 118 (574)
...+.+.+-.-.|+..+...++++.|...|++++|++.--... .++...+.+++.-+... +..+
T Consensus 44 ~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~ 123 (929)
T KOG2062|consen 44 PKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQK 123 (929)
T ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCcccc
Q ss_pred -----HHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHH-cCCChHHHHH
Q 046956 119 -----EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG-KRKEISCARK 192 (574)
Q Consensus 119 -----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~ 192 (574)
+-..++++|.+. ..+..-|..+|.......+++.-++..-.....+ ..-...++.+++.-- +..+.+.-..
T Consensus 124 ~~iD~rL~~iv~rmi~k--cl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~-~~~~yll~l~~s~v~~~efR~~vlr~ 200 (929)
T KOG2062|consen 124 SPIDQRLRDIVERMIQK--CLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVI-GNLTYLLELLISLVNNREFRNKVLRL 200 (929)
T ss_pred CCCCHHHHHHHHHHHHH--hhhhhHHHHHHhHHhhhhhHHHHHHHhccccccc-hHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCC-----chhHH
Q 046956 193 VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-----NVVSY 267 (574)
Q Consensus 193 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 267 (574)
+++....-...-|..+..+|....+.+.+.++++++.+.|......-+.-.....-.++-+...... -+ +....
T Consensus 201 lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~-l~~d~~~de~p~ 279 (929)
T KOG2062|consen 201 LVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDR-LPADDARDEKPM 279 (929)
T ss_pred HHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHH-cccccccccChH
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc
Q 046956 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347 (574)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 347 (574)
..++..+.-.-..+--.+.+-+-...|....+..-... +..-..-|.-+-+.+...| ..+...+..=+..+++..+|.
T Consensus 280 ~kii~ILSGe~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G-TT~D~FlR~NL~WlskAtNWa 357 (929)
T KOG2062|consen 280 EKIISILSGEETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAG-TTSDTFLRNNLDWLSKATNWA 357 (929)
T ss_pred HHHHHHhcCchHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcC-CcchHHHHhchhHHhhcchHh
Q ss_pred -----------------hHHHHHHHHHHh----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC------------
Q 046956 348 -----------------LSNWVDSYLSRS----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN------------ 394 (574)
Q Consensus 348 -----------------~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------ 394 (574)
.+.+++.-.... +........+..+.-.++..|+- ..+++....+
T Consensus 358 KFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~c 435 (929)
T KOG2062|consen 358 KFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGAC 435 (929)
T ss_pred hhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhh
Q ss_pred ----------CChhHHHH-------------------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 395 ----------RDVVSYCS-------------------MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 395 ----------~~~~~~~~-------------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
.+...|+. |.-......+.+...+++.-..+.. .-...-=..+.-++.--
T Consensus 436 LGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ-Heki~RGl~vGiaL~~y 514 (929)
T KOG2062|consen 436 LGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ-HEKIIRGLAVGIALVVY 514 (929)
T ss_pred hhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh-HHHHHHHHHHhHHHHHh
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
|+.++|..+.+++.....--....-..+++-+|+..|+..-..+++.-. ..+-|..-...+.-++.-..+.+....+.
T Consensus 515 grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V 594 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTV 594 (929)
T ss_pred hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHH
Q ss_pred HHHHhh-CCC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 524 NRLFEL-EPQ-NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 524 ~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+-+.+. +|. ...+-..|+-+|.-.|. .+|..+++-|...
T Consensus 595 ~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D 635 (929)
T KOG2062|consen 595 SLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSD 635 (929)
T ss_pred HHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcC
No 489
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.67 E-value=65 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
-.+|.+|...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777788888888877777654
No 490
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.28 E-value=4.8e+02 Score=26.21 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=82.6
Q ss_pred HHcCChHHHHHHHHHHHHCC-CCCCHH-------HHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCcH--HHHHHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEG-LTPDEV-------AFTIVLTA-CSHVGLVEDGWRFFEAMQNVYAIVPSP--EHYACMVD 476 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g-~~p~~~-------~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~ 476 (574)
.-.|++.+|++-...|.+-- -.|.+. ....++.. |...|.++.|..-|..+.+. --.-|. ..-..++-
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHH
Confidence 34688888888777776521 123311 12223332 44567788888777777653 222222 22224556
Q ss_pred HHhhcCCHHHHHHHHHhCCCC-CCH---H-HHHHH----HHHHHhcCCHHHHHHHHHHHHhhC-CC-----CchhHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVE-PHA---S-AWGAL----LGACKLYSDIELGELVANRLFELE-PQ-----NAGSYVLLS 541 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~-p~~---~-~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~-p~-----~~~~~~~l~ 541 (574)
.|.+.|+-+.--++++.++-. .+. . .-+.+ .-.....+++.+|...+.+.++.. -. ..-.+..|+
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 677888877777777776311 110 0 00111 112246778888888888877763 11 122345566
Q ss_pred HHHHhcCCchHHHHHHH
Q 046956 542 NIYATADRWLDVCLVRS 558 (574)
Q Consensus 542 ~~~~~~g~~~~a~~~~~ 558 (574)
.+....|+..++.+...
T Consensus 493 ~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHhcchHHHHhccc
Confidence 67777777777665543
No 491
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.17 E-value=1e+02 Score=22.54 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCC
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGD 217 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 217 (574)
...++..+.+.|+- +-...-...+...+.+++.++++.++.++..+|..+..++...|.
T Consensus 22 ~~~v~~~L~~~gvl----t~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDIL----TDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCC----CHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 33456666665531 222222233344556667777777666666777777666655443
No 492
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.77 E-value=4.8e+02 Score=26.23 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=43.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 570 (574)
..++....+...+.+-.+-+....-+++.....-...+...|++.+|.+++- ..|+.+.||
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 3455555566666666666666666778888888899999999999988774 445555555
No 493
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.62 E-value=2.3e+02 Score=22.38 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=60.6
Q ss_pred hHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHH----HHHhc-------cCCcHH
Q 046956 86 LSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI----KACSH-------VLSVRE 154 (574)
Q Consensus 86 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll----~~~~~-------~~~~~~ 154 (574)
+.-|.+++.+....+ .+...++.+....-.-.++++..++......|... ....+ +.|-. .+...-
T Consensus 5 p~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~ef-l~~yI~~cI~~ce~~kd~~~q~R~VRl 81 (126)
T PF10155_consen 5 PNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEF-LHMYISNCIKSCESIKDKYMQNRLVRL 81 (126)
T ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHhhcccccccchhhh
Confidence 344444444443222 25666667777777777777777777665444332 22222 23322 122333
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccC
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (574)
.-.+++.+++.|+......+..+=..|.+..+..+|..+|+-+
T Consensus 82 vcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 82 VCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 3455666667676555556666666666777777777777654
No 494
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.46 E-value=1.2e+02 Score=20.31 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHH-----hccCCcHHHHHH
Q 046956 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKAC-----SHVLSVREGTAI 158 (574)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~ 158 (574)
+...|++-+|-++++.+-.....+....+..+|..+ .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 344666777777776665433333444444555433 244555555443
No 495
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.01 E-value=1.1e+02 Score=23.41 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=30.6
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHH
Q 046956 39 SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI 76 (574)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll 76 (574)
++...|+.|...+.+..|.+.+.+.| +.+....+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 58889999999899999999999999 56666666665
No 496
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=33.99 E-value=3.6e+02 Score=27.70 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=57.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcC--
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNIYATAD-- 548 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-- 548 (574)
..|-+-+....++.-|.++-++.++. ....|.....+|.+.+++..|..-|++++++. .+-|.....+... ...|
T Consensus 560 ecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ieGgpp 637 (1141)
T KOG1811|consen 560 ECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IEGGPP 637 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hcCCCc
Confidence 34444555566667777777766544 34578888889999999999999999998874 4445555555553 2333
Q ss_pred -CchHHHHHHHHHH
Q 046956 549 -RWLDVCLVRSKMK 561 (574)
Q Consensus 549 -~~~~a~~~~~~~~ 561 (574)
+...+.+.++...
T Consensus 638 ~dVq~Vrem~dhla 651 (1141)
T KOG1811|consen 638 RDVQDVREMLDHLA 651 (1141)
T ss_pred chHHHHHHHHHHhc
Confidence 4455555554443
No 497
>PRK09857 putative transposase; Provisional
Probab=33.47 E-value=2.7e+02 Score=25.94 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=42.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
++......++.++-.++++...+..|........+++-+.+.|..+++.++.++|...|+..
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33333455666666666666666666666666677788888887778888888888888753
No 498
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=32.77 E-value=2.2e+02 Score=22.52 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
...-+.+.|.++|+++++..|+...++..++..+...
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 3445678999999999999999999988888776553
No 499
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.75 E-value=4.3e+02 Score=24.89 Aligned_cols=19 Identities=5% Similarity=0.316 Sum_probs=9.8
Q ss_pred HhccCcHHHHHHHHHHhHh
Q 046956 442 CSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~ 460 (574)
-.+.|+..+|.+.++++.+
T Consensus 285 ARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHhhhHHHHHHHHHHHhh
Confidence 3445555555555555544
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.09 E-value=2.2e+02 Score=23.83 Aligned_cols=22 Identities=5% Similarity=-0.169 Sum_probs=10.4
Q ss_pred CcchHHHHHHHHHHhCCCCChh
Q 046956 345 NLDLSNWVDSYLSRSHMDLSRA 366 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~ 366 (574)
..-.|.++++.+.+.+...+..
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~a 61 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPP 61 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcc
Confidence 3344555555555544444444
Done!