Query 046956
Match_columns 574
No_of_seqs 644 out of 4025
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 10:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.9E-43 2E-47 363.1 33.9 477 79-565 62-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-39 6.6E-44 336.7 32.0 473 66-545 81-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-28 1.2E-32 237.7 36.8 277 266-549 103-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.2E-27 2.8E-31 227.9 36.9 348 210-564 7-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 2E-26 6.8E-31 228.6 22.7 185 295-481 26-223 (501)
6 2gw1_A Mitochondrial precursor 99.9 1.4E-24 4.7E-29 220.6 30.9 430 103-540 8-489 (514)
7 3fp2_A TPR repeat-containing p 99.9 3.5E-24 1.2E-28 218.9 33.3 431 101-539 25-501 (537)
8 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.1E-28 211.5 33.3 419 78-503 14-485 (514)
9 4g26_A Pentatricopeptide repea 99.9 1.1E-24 3.6E-29 216.2 22.2 200 312-513 7-223 (501)
10 2y4t_A DNAJ homolog subfamily 99.9 2.5E-22 8.5E-27 200.3 32.5 333 201-567 25-414 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.7E-22 1.6E-26 198.3 29.8 301 261-565 23-360 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-21 5.2E-26 199.4 33.6 417 71-499 27-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.3E-20 1.1E-24 178.8 30.4 301 235-564 5-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.2E-19 7.6E-24 172.9 30.4 318 201-547 2-353 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 7E-17 2.4E-21 169.8 48.7 454 54-558 941-1440(1630)
16 3hym_B Cell division cycle pro 99.8 3.8E-19 1.3E-23 169.2 26.3 287 261-551 19-322 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 3.1E-16 1.1E-20 164.9 48.0 382 137-557 986-1378(1630)
18 1b89_A Protein (clathrin heavy 99.8 1.3E-19 4.4E-24 171.1 20.5 240 81-342 14-253 (449)
19 2xm6_A Protein corresponding t 99.8 6.5E-18 2.2E-22 169.9 33.8 365 135-546 38-452 (490)
20 3hym_B Cell division cycle pro 99.8 1.2E-18 4.1E-23 165.7 26.9 266 293-564 20-300 (330)
21 1fch_A Peroxisomal targeting s 99.8 3.8E-19 1.3E-23 172.1 23.3 277 277-560 38-356 (368)
22 2ooe_A Cleavage stimulation fa 99.8 4.6E-17 1.6E-21 165.4 37.7 410 124-564 2-493 (530)
23 3mkr_A Coatomer subunit epsilo 99.8 2.4E-17 8.1E-22 152.8 29.0 270 272-555 7-286 (291)
24 2xm6_A Protein corresponding t 99.8 1.7E-16 5.8E-21 159.5 37.2 350 170-565 38-434 (490)
25 4g1t_A Interferon-induced prot 99.8 2.4E-17 8.2E-22 165.2 29.3 366 170-574 50-470 (472)
26 2ooe_A Cleavage stimulation fa 99.8 1.4E-16 4.7E-21 161.9 33.7 407 98-532 10-495 (530)
27 1b89_A Protein (clathrin heavy 99.8 2.1E-17 7.3E-22 156.1 24.5 278 113-419 15-304 (449)
28 4eqf_A PEX5-related protein; a 99.8 5.5E-18 1.9E-22 163.7 20.0 255 266-559 67-352 (365)
29 3cv0_A Peroxisome targeting si 99.8 8.7E-18 3E-22 159.5 20.3 273 265-561 22-313 (327)
30 1fch_A Peroxisomal targeting s 99.8 1.8E-17 6.2E-22 160.3 22.8 243 262-529 96-359 (368)
31 3mkr_A Coatomer subunit epsilo 99.8 8.7E-17 3E-21 149.0 22.9 248 302-565 6-266 (291)
32 4eqf_A PEX5-related protein; a 99.8 5.5E-17 1.9E-21 156.7 22.0 228 333-564 68-311 (365)
33 3cv0_A Peroxisome targeting si 99.7 5.5E-17 1.9E-21 154.0 18.0 272 232-530 20-316 (327)
34 4g1t_A Interferon-induced prot 99.7 2E-16 6.7E-21 158.6 20.5 378 134-541 49-471 (472)
35 2pl2_A Hypothetical conserved 99.7 5.6E-16 1.9E-20 137.1 18.9 190 368-561 7-212 (217)
36 3uq3_A Heat shock protein STI1 99.7 1.7E-15 6E-20 138.2 22.8 226 296-564 6-237 (258)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.2E-20 138.5 21.3 234 263-543 4-256 (258)
38 3u4t_A TPR repeat-containing p 99.7 4.7E-15 1.6E-19 136.6 20.2 246 266-548 5-269 (272)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.2E-15 2.1E-19 135.9 19.4 241 307-557 17-269 (275)
40 3spa_A Mtrpol, DNA-directed RN 99.6 9.6E-17 3.3E-21 163.7 6.0 132 65-197 123-262 (1134)
41 1ouv_A Conserved hypothetical 99.6 1.5E-13 5.3E-18 126.4 26.5 224 294-564 5-252 (273)
42 3e4b_A ALGK; tetratricopeptide 99.6 1.8E-14 6.2E-19 142.5 21.5 343 177-530 9-388 (452)
43 2vq2_A PILW, putative fimbrial 99.6 8.2E-14 2.8E-18 124.0 22.9 195 368-564 10-212 (225)
44 2ho1_A Type 4 fimbrial biogene 99.6 5.2E-14 1.8E-18 127.9 21.6 195 368-564 39-239 (252)
45 2h6f_A Protein farnesyltransfe 99.6 4.6E-14 1.6E-18 135.1 21.6 246 295-547 97-366 (382)
46 3vtx_A MAMA; tetratricopeptide 99.6 5.5E-14 1.9E-18 120.9 20.0 166 396-565 4-172 (184)
47 3e4b_A ALGK; tetratricopeptide 99.6 2.5E-14 8.4E-19 141.5 20.1 343 207-565 8-389 (452)
48 2ho1_A Type 4 fimbrial biogene 99.6 2.4E-13 8.2E-18 123.5 24.7 171 368-540 73-249 (252)
49 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.5E-19 130.0 17.1 193 368-563 25-222 (243)
50 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.6E-19 129.9 16.9 178 368-548 59-241 (243)
51 3sf4_A G-protein-signaling mod 99.6 6.9E-14 2.4E-18 136.9 22.1 295 262-556 7-369 (406)
52 4a1s_A PINS, partner of inscut 99.6 1.1E-14 3.8E-19 142.9 16.3 261 301-562 54-371 (411)
53 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-15 4.1E-20 155.8 9.4 124 368-492 129-260 (1134)
54 3u4t_A TPR repeat-containing p 99.6 7.7E-14 2.6E-18 128.4 20.4 224 337-565 10-252 (272)
55 1ouv_A Conserved hypothetical 99.6 5.9E-13 2E-17 122.5 26.1 230 261-535 3-257 (273)
56 2h6f_A Protein farnesyltransfe 99.6 3.5E-14 1.2E-18 135.9 18.2 228 330-564 97-349 (382)
57 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.9E-18 131.4 21.1 263 301-564 11-333 (338)
58 2pl2_A Hypothetical conserved 99.6 1.2E-13 4.2E-18 122.0 19.6 190 297-493 7-210 (217)
59 2vq2_A PILW, putative fimbrial 99.6 5.1E-13 1.7E-17 118.8 23.3 171 368-540 44-222 (225)
60 3sf4_A G-protein-signaling mod 99.6 1.2E-14 4.1E-19 142.3 12.9 260 235-494 11-333 (406)
61 4abn_A Tetratricopeptide repea 99.6 3.6E-14 1.2E-18 141.2 15.2 188 368-559 104-317 (474)
62 1xnf_A Lipoprotein NLPI; TPR, 99.5 9E-14 3.1E-18 128.1 15.8 220 341-565 16-246 (275)
63 4e6h_A MRNA 3'-END-processing 99.5 3.5E-11 1.2E-15 122.9 34.1 439 57-536 55-577 (679)
64 3ulq_A Response regulator aspa 99.5 2.5E-13 8.7E-18 131.8 17.1 223 339-562 112-367 (383)
65 4gyw_A UDP-N-acetylglucosamine 99.5 3.3E-13 1.1E-17 139.5 18.4 162 397-562 9-173 (723)
66 4a1s_A PINS, partner of inscut 99.5 3.4E-13 1.2E-17 132.3 17.0 266 267-532 51-375 (411)
67 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-12 6E-17 111.4 17.7 165 368-535 7-176 (184)
68 3as5_A MAMA; tetratricopeptide 99.5 1.4E-12 4.6E-17 112.1 16.7 160 402-564 13-174 (186)
69 3ro2_A PINS homolog, G-protein 99.5 5.7E-13 1.9E-17 126.5 15.7 264 269-532 10-335 (338)
70 4e6h_A MRNA 3'-END-processing 99.5 2.4E-10 8.2E-15 116.8 34.7 215 349-566 328-573 (679)
71 2ond_A Cleavage stimulation fa 99.5 2.6E-11 8.8E-16 113.5 25.3 219 312-536 33-277 (308)
72 3ulq_A Response regulator aspa 99.4 5.6E-12 1.9E-16 122.3 20.8 230 301-530 109-369 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 4.2E-13 1.4E-17 126.0 12.2 54 509-562 253-306 (311)
74 3q15_A PSP28, response regulat 99.4 4.4E-12 1.5E-16 122.7 19.4 223 339-562 110-364 (378)
75 3nf1_A KLC 1, kinesin light ch 99.4 2.2E-13 7.6E-18 127.9 9.9 239 294-532 26-310 (311)
76 2ond_A Cleavage stimulation fa 99.4 2E-11 6.7E-16 114.3 22.8 214 347-566 33-273 (308)
77 4i17_A Hypothetical protein; T 99.4 1.3E-11 4.5E-16 110.0 19.9 205 328-545 5-225 (228)
78 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.7E-15 112.0 28.4 53 270-322 20-80 (373)
79 4i17_A Hypothetical protein; T 99.4 8.2E-12 2.8E-16 111.3 17.5 187 368-565 9-211 (228)
80 3as5_A MAMA; tetratricopeptide 99.4 3.5E-11 1.2E-15 103.1 19.8 166 368-536 10-180 (186)
81 4abn_A Tetratricopeptide repea 99.4 7.4E-12 2.5E-16 124.5 16.6 179 382-565 84-289 (474)
82 3q15_A PSP28, response regulat 99.3 3.6E-10 1.2E-14 109.2 24.6 229 300-529 106-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.3 1.7E-11 5.9E-16 126.8 14.4 166 362-531 5-176 (723)
84 1qqe_A Vesicular transport pro 99.3 9.4E-11 3.2E-15 108.7 16.3 173 368-542 79-282 (292)
85 3edt_B KLC 2, kinesin light ch 99.3 7.9E-11 2.7E-15 108.6 15.2 223 341-563 12-281 (283)
86 3mv2_B Coatomer subunit epsilo 99.3 4.4E-09 1.5E-13 95.3 25.7 243 272-537 21-290 (310)
87 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-11 4E-16 101.9 7.7 142 404-549 4-149 (150)
88 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-10 1.1E-14 100.6 17.5 183 368-569 6-219 (225)
89 1hz4_A MALT regulatory protein 99.2 1.2E-09 4E-14 105.4 22.6 86 238-323 19-121 (373)
90 3qky_A Outer membrane assembly 99.2 2.5E-10 8.5E-15 104.0 15.6 183 368-552 17-250 (261)
91 1qqe_A Vesicular transport pro 99.2 8.2E-11 2.8E-15 109.1 12.1 191 372-562 43-268 (292)
92 2fo7_A Synthetic consensus TPR 99.2 5.4E-10 1.9E-14 89.8 15.2 128 435-564 4-133 (136)
93 3qky_A Outer membrane assembly 99.2 9.8E-10 3.3E-14 100.0 18.5 170 394-565 12-226 (261)
94 3edt_B KLC 2, kinesin light ch 99.2 7.9E-10 2.7E-14 101.8 17.2 199 331-529 44-281 (283)
95 2pzi_A Probable serine/threoni 99.2 1.4E-10 4.7E-15 120.7 12.5 168 377-549 402-583 (681)
96 4ga2_A E3 SUMO-protein ligase 99.1 8.1E-11 2.8E-15 96.8 7.9 126 438-565 3-131 (150)
97 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.6E-14 100.5 17.0 173 385-562 105-283 (287)
98 3rjv_A Putative SEL1 repeat pr 99.1 5.3E-09 1.8E-13 91.6 19.9 162 395-565 16-199 (212)
99 2fo7_A Synthetic consensus TPR 99.1 2.6E-09 9E-14 85.7 16.4 132 399-533 3-136 (136)
100 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4.1E-13 92.4 22.1 240 303-565 21-284 (310)
101 2vsy_A XCC0866; transferase, g 99.1 1.5E-09 5E-14 111.1 16.9 159 379-541 2-169 (568)
102 4gco_A Protein STI-1; structur 99.1 1.9E-09 6.5E-14 85.4 12.3 114 428-543 8-124 (126)
103 3urz_A Uncharacterized protein 99.1 3.6E-09 1.2E-13 92.4 15.2 127 402-533 59-190 (208)
104 2r5s_A Uncharacterized protein 99.1 1.4E-09 4.6E-14 92.3 12.1 156 402-562 11-172 (176)
105 2pzi_A Probable serine/threoni 99.0 1.1E-09 3.8E-14 113.9 12.2 152 408-564 402-564 (681)
106 3gyz_A Chaperone protein IPGC; 99.0 1.8E-09 6.1E-14 88.2 10.8 97 468-564 36-134 (151)
107 2vsy_A XCC0866; transferase, g 99.0 7.1E-09 2.4E-13 106.0 17.3 150 411-564 3-158 (568)
108 3urz_A Uncharacterized protein 99.0 6.3E-09 2.1E-13 90.9 13.7 160 401-565 8-188 (208)
109 3dra_A Protein farnesyltransfe 99.0 1.1E-07 3.7E-12 87.2 21.7 218 311-562 49-286 (306)
110 3qou_A Protein YBBN; thioredox 99.0 8.5E-09 2.9E-13 95.1 14.2 135 430-566 114-251 (287)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 7.5E-09 2.6E-13 96.6 14.0 218 307-555 3-253 (307)
112 2vgx_A Chaperone SYCD; alterna 99.0 2.6E-09 8.9E-14 87.4 9.6 101 434-536 23-125 (148)
113 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.4E-08 8.2E-13 87.5 16.4 131 398-534 7-155 (213)
114 4gco_A Protein STI-1; structur 99.0 8.1E-09 2.8E-13 81.7 11.9 102 464-565 8-112 (126)
115 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.9E-08 6.4E-13 89.1 15.6 186 329-535 3-219 (225)
116 2r5s_A Uncharacterized protein 98.9 9.8E-09 3.4E-13 86.9 12.7 157 368-528 8-172 (176)
117 1a17_A Serine/threonine protei 98.9 2.9E-08 9.8E-13 83.0 14.3 126 434-561 15-144 (166)
118 3u3w_A Transcriptional activat 98.9 3.5E-07 1.2E-11 84.6 22.6 161 402-562 80-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.1E-08 2.4E-12 84.5 16.9 130 368-500 8-154 (213)
120 2uy1_A Cleavage stimulation fa 98.9 6.7E-07 2.3E-11 88.7 25.6 367 113-528 6-412 (493)
121 2lni_A Stress-induced-phosphop 98.9 2.8E-08 9.7E-13 79.4 12.9 115 433-549 17-133 (133)
122 2vyi_A SGTA protein; chaperone 98.9 3.5E-08 1.2E-12 78.5 13.2 117 433-551 13-131 (131)
123 2qfc_A PLCR protein; TPR, HTH, 98.9 1.3E-07 4.4E-12 87.5 18.8 162 399-561 77-264 (293)
124 1na0_A Designed protein CTPR3; 98.9 5.4E-08 1.9E-12 76.6 13.8 114 433-548 10-125 (125)
125 3dra_A Protein farnesyltransfe 98.9 2.5E-06 8.4E-11 78.2 26.3 234 272-542 40-301 (306)
126 2e2e_A Formate-dependent nitri 98.9 9.9E-09 3.4E-13 87.0 9.7 128 407-537 20-152 (177)
127 2c2l_A CHIP, carboxy terminus 98.9 4.9E-09 1.7E-13 96.3 8.3 188 368-563 6-199 (281)
128 2ifu_A Gamma-SNAP; membrane fu 98.9 1.7E-08 5.9E-13 94.1 12.1 196 343-561 4-222 (307)
129 2xcb_A PCRH, regulatory protei 98.8 1.8E-08 6.2E-13 81.8 10.4 101 434-536 20-122 (142)
130 1p5q_A FKBP52, FK506-binding p 98.8 3.6E-08 1.2E-12 93.0 13.5 94 468-561 196-292 (336)
131 4f3v_A ESX-1 secretion system 98.8 1.1E-08 3.7E-13 91.5 8.8 124 438-564 108-238 (282)
132 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-08 5.7E-13 82.5 9.0 108 454-564 9-119 (148)
133 3upv_A Heat shock protein STI1 98.8 4.9E-08 1.7E-12 77.3 11.5 107 434-542 6-120 (126)
134 3rjv_A Putative SEL1 repeat pr 98.8 3.5E-07 1.2E-11 79.9 17.5 159 368-531 20-199 (212)
135 2kck_A TPR repeat; tetratricop 98.8 6.9E-08 2.4E-12 74.3 10.8 99 468-566 6-109 (112)
136 1hxi_A PEX5, peroxisome target 98.7 4.3E-08 1.5E-12 76.8 9.5 96 470-565 19-116 (121)
137 3gyz_A Chaperone protein IPGC; 98.7 3.9E-08 1.3E-12 80.2 9.4 99 434-534 38-138 (151)
138 3u3w_A Transcriptional activat 98.7 2.6E-06 8.7E-11 78.7 22.8 160 370-529 79-266 (293)
139 4f3v_A ESX-1 secretion system 98.7 3.6E-07 1.2E-11 81.7 15.7 138 400-542 105-249 (282)
140 2fbn_A 70 kDa peptidylprolyl i 98.7 1.3E-07 4.4E-12 81.7 12.4 168 376-564 14-187 (198)
141 3sz7_A HSC70 cochaperone (SGT) 98.7 9.4E-08 3.2E-12 79.7 11.0 109 432-542 11-121 (164)
142 3q49_B STIP1 homology and U bo 98.7 1.9E-07 6.4E-12 75.1 12.3 99 432-532 9-109 (137)
143 1elw_A TPR1-domain of HOP; HOP 98.7 3.1E-07 1.1E-11 71.3 13.1 108 434-543 6-115 (118)
144 2e2e_A Formate-dependent nitri 98.7 1.3E-07 4.5E-12 80.0 11.7 123 442-566 20-147 (177)
145 4gcn_A Protein STI-1; structur 98.7 6.4E-08 2.2E-12 76.7 9.1 92 471-562 11-111 (127)
146 3upv_A Heat shock protein STI1 98.7 2.1E-07 7.1E-12 73.6 12.0 97 468-564 4-102 (126)
147 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.6E-12 76.5 10.7 98 467-564 17-116 (142)
148 2qfc_A PLCR protein; TPR, HTH, 98.7 7.4E-07 2.5E-11 82.4 16.9 162 368-529 77-266 (293)
149 1elw_A TPR1-domain of HOP; HOP 98.7 3.1E-07 1.1E-11 71.3 12.2 99 467-565 3-103 (118)
150 2lni_A Stress-induced-phosphop 98.7 2.3E-07 8E-12 73.9 11.7 101 465-565 13-115 (133)
151 2dba_A Smooth muscle cell asso 98.6 3.5E-07 1.2E-11 74.5 12.6 112 431-545 27-144 (148)
152 3sz7_A HSC70 cochaperone (SGT) 98.6 3.4E-07 1.2E-11 76.3 12.7 95 397-494 11-105 (164)
153 3gw4_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 78.5 13.8 82 378-459 4-93 (203)
154 2hr2_A Hypothetical protein; a 98.6 1.7E-07 5.9E-12 75.4 9.7 61 502-562 59-130 (159)
155 2uy1_A Cleavage stimulation fa 98.6 1.7E-05 5.8E-10 78.7 26.2 313 235-560 17-380 (493)
156 1na0_A Designed protein CTPR3; 98.6 3.7E-07 1.3E-11 71.7 11.7 98 468-565 9-108 (125)
157 3gw4_A Uncharacterized protein 98.6 8.3E-07 2.8E-11 76.8 14.6 128 434-561 28-174 (203)
158 1a17_A Serine/threonine protei 98.6 8.4E-07 2.9E-11 73.8 14.1 129 398-529 14-146 (166)
159 2dba_A Smooth muscle cell asso 98.6 1.1E-06 3.7E-11 71.5 14.4 98 467-564 27-129 (148)
160 3q7a_A Farnesyltransferase alp 98.6 5.1E-06 1.7E-10 76.9 19.7 32 531-562 299-330 (349)
161 2vyi_A SGTA protein; chaperone 98.6 4.5E-07 1.5E-11 71.9 10.8 100 466-565 10-111 (131)
162 3dss_A Geranylgeranyl transfer 98.6 1.4E-05 4.8E-10 73.7 21.9 50 515-564 253-305 (331)
163 2xev_A YBGF; tetratricopeptide 98.6 3E-07 1E-11 73.0 9.3 107 436-544 6-120 (129)
164 3q49_B STIP1 homology and U bo 98.6 6.3E-07 2.1E-11 71.9 11.3 99 466-564 7-107 (137)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 5.1E-07 1.7E-11 89.1 12.3 143 397-561 268-413 (457)
166 3q7a_A Farnesyltransferase alp 98.5 6.7E-05 2.3E-09 69.5 24.9 231 306-542 65-345 (349)
167 4gcn_A Protein STI-1; structur 98.5 5.5E-07 1.9E-11 71.2 9.6 110 399-539 10-121 (127)
168 2xev_A YBGF; tetratricopeptide 98.5 1.7E-06 6E-11 68.4 12.6 92 473-564 7-106 (129)
169 1elr_A TPR2A-domain of HOP; HO 98.5 5.7E-07 1.9E-11 71.3 9.5 110 434-546 6-124 (131)
170 3dss_A Geranylgeranyl transfer 98.5 3.5E-05 1.2E-09 71.0 22.1 230 307-544 41-319 (331)
171 1wao_1 Serine/threonine protei 98.5 4.4E-07 1.5E-11 89.9 10.2 119 438-558 12-134 (477)
172 3rkv_A Putative peptidylprolyl 98.5 5.2E-07 1.8E-11 74.9 9.2 113 433-545 12-143 (162)
173 2fbn_A 70 kDa peptidylprolyl i 98.5 1.7E-07 6E-12 80.9 6.0 97 468-564 38-152 (198)
174 2if4_A ATFKBP42; FKBP-like, al 98.5 3.2E-07 1.1E-11 86.5 8.2 152 397-568 179-333 (338)
175 1dce_A Protein (RAB geranylger 98.4 1E-05 3.5E-10 81.6 19.3 170 380-552 43-244 (567)
176 2kck_A TPR repeat; tetratricop 98.4 1E-06 3.5E-11 67.6 9.4 99 434-534 8-111 (112)
177 3rkv_A Putative peptidylprolyl 98.4 8.4E-07 2.9E-11 73.7 9.5 94 399-494 13-123 (162)
178 1p5q_A FKBP52, FK506-binding p 98.4 2.1E-06 7.3E-11 80.8 13.3 128 397-528 147-293 (336)
179 3k9i_A BH0479 protein; putativ 98.4 2.1E-07 7.2E-12 72.5 5.4 94 444-538 2-99 (117)
180 1elr_A TPR2A-domain of HOP; HO 98.4 8.8E-07 3E-11 70.2 9.2 97 468-564 4-109 (131)
181 1ihg_A Cyclophilin 40; ppiase 98.4 1.7E-06 5.7E-11 82.5 12.4 138 398-556 224-363 (370)
182 1hxi_A PEX5, peroxisome target 98.4 1.3E-06 4.3E-11 68.4 9.6 98 435-534 20-119 (121)
183 3ro3_A PINS homolog, G-protein 98.4 2.3E-06 7.8E-11 70.7 11.6 128 435-562 12-157 (164)
184 4b4t_Q 26S proteasome regulato 98.4 5.1E-06 1.7E-10 81.5 15.7 162 400-561 58-243 (434)
185 2c2l_A CHIP, carboxy terminus 98.4 2.1E-06 7.1E-11 78.7 11.9 113 431-545 3-117 (281)
186 3k9i_A BH0479 protein; putativ 98.4 6.1E-07 2.1E-11 69.8 6.6 83 481-563 3-90 (117)
187 2hr2_A Hypothetical protein; a 98.3 1.4E-06 4.8E-11 70.1 8.1 74 470-543 59-145 (159)
188 2l6j_A TPR repeat-containing p 98.3 3.5E-07 1.2E-11 70.2 3.9 94 467-560 3-104 (111)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 2.3E-06 8E-11 80.6 9.2 149 368-535 181-334 (338)
190 3n71_A Histone lysine methyltr 98.2 1.7E-06 6E-11 84.9 8.1 96 469-564 352-465 (490)
191 4b4t_Q 26S proteasome regulato 98.2 2.8E-05 9.5E-10 76.3 16.4 158 405-562 12-203 (434)
192 1wao_1 Serine/threonine protei 98.2 7.6E-06 2.6E-10 81.0 12.1 84 375-460 15-102 (477)
193 3ro3_A PINS homolog, G-protein 98.2 8.7E-06 3E-10 67.1 10.8 132 399-530 11-159 (164)
194 3ma5_A Tetratricopeptide repea 98.2 7.1E-06 2.4E-10 61.5 9.2 64 499-562 6-69 (100)
195 1na3_A Designed protein CTPR2; 98.2 1.1E-05 3.8E-10 58.9 9.5 81 468-548 9-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7E-06 2.4E-10 80.9 9.9 66 500-565 317-382 (457)
197 1zu2_A Mitochondrial import re 98.1 2.3E-06 8E-11 68.7 4.5 98 444-565 14-122 (158)
198 1zu2_A Mitochondrial import re 98.1 9.1E-06 3.1E-10 65.3 7.7 125 408-564 13-148 (158)
199 2kat_A Uncharacterized protein 98.1 2E-05 7E-10 60.7 9.6 79 451-531 4-84 (115)
200 1ihg_A Cyclophilin 40; ppiase 98.1 1E-05 3.5E-10 77.1 9.4 114 433-565 224-338 (370)
201 3bee_A Putative YFRE protein; 98.1 2.7E-05 9.1E-10 57.0 9.5 72 498-570 4-78 (93)
202 1dce_A Protein (RAB geranylger 98.1 3.6E-05 1.2E-09 77.6 13.6 152 411-566 43-224 (567)
203 1klx_A Cysteine rich protein B 98.0 9.3E-05 3.2E-09 59.1 12.5 89 474-564 31-127 (138)
204 2l6j_A TPR repeat-containing p 98.0 2.9E-05 9.9E-10 59.2 8.7 68 499-566 3-70 (111)
205 1klx_A Cysteine rich protein B 97.8 0.00027 9.3E-09 56.3 12.4 111 411-530 9-127 (138)
206 1na3_A Designed protein CTPR2; 97.8 7.4E-05 2.5E-09 54.4 8.2 66 500-565 9-74 (91)
207 3n71_A Histone lysine methyltr 97.8 8.8E-05 3E-09 72.9 10.8 123 407-529 319-464 (490)
208 2kat_A Uncharacterized protein 97.8 0.0001 3.5E-09 56.6 9.2 62 500-561 19-80 (115)
209 3ly7_A Transcriptional activat 97.7 0.0016 5.5E-08 60.2 16.7 138 395-534 192-344 (372)
210 3lvg_A Clathrin heavy chain 1; 97.6 1.2E-05 4.3E-10 75.4 0.9 258 136-417 54-324 (624)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00017 5.8E-09 53.5 7.2 79 473-559 5-86 (99)
212 3qww_A SET and MYND domain-con 97.6 0.00011 3.9E-09 70.8 7.1 94 444-537 310-424 (433)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00083 2.8E-08 49.7 9.3 86 439-534 7-95 (99)
214 3qww_A SET and MYND domain-con 97.4 0.00089 3E-08 64.6 11.6 86 409-494 310-408 (433)
215 3ma5_A Tetratricopeptide repea 97.4 0.00063 2.1E-08 50.6 8.4 64 396-460 6-69 (100)
216 3qwp_A SET and MYND domain-con 97.4 0.00041 1.4E-08 67.1 8.9 104 437-540 292-416 (429)
217 1wy6_A Hypothetical protein ST 97.4 0.013 4.6E-07 44.4 14.6 148 400-566 8-157 (172)
218 3lvg_A Clathrin heavy chain 1; 97.3 4.8E-05 1.6E-09 71.6 1.5 233 69-316 54-325 (624)
219 3u64_A Protein TP_0956; tetrat 97.3 0.00091 3.1E-08 59.1 9.1 88 484-571 179-277 (301)
220 3qwp_A SET and MYND domain-con 97.3 0.0015 5.1E-08 63.2 11.4 93 402-494 292-397 (429)
221 3mkq_A Coatomer beta'-subunit; 97.2 0.023 7.9E-07 60.5 21.0 153 211-391 608-761 (814)
222 3ly7_A Transcriptional activat 97.2 0.0033 1.1E-07 58.1 11.9 134 428-565 190-341 (372)
223 2v5f_A Prolyl 4-hydroxylase su 97.1 0.004 1.4E-07 46.5 9.8 74 468-541 5-87 (104)
224 1pc2_A Mitochondria fission pr 97.1 0.0032 1.1E-07 49.9 9.0 90 449-540 15-111 (152)
225 1pc2_A Mitochondria fission pr 97.0 0.002 6.9E-08 51.1 7.4 81 485-565 15-102 (152)
226 1qsa_A Protein (soluble lytic 96.7 0.63 2.1E-05 46.9 30.4 123 411-540 228-355 (618)
227 3bee_A Putative YFRE protein; 96.6 0.017 5.7E-07 41.9 9.4 71 465-535 3-78 (93)
228 3mkq_A Coatomer beta'-subunit; 96.5 0.19 6.5E-06 53.3 20.3 169 179-393 607-776 (814)
229 2v5f_A Prolyl 4-hydroxylase su 96.4 0.016 5.5E-07 43.1 8.1 66 499-564 4-76 (104)
230 1nzn_A CGI-135 protein, fissio 96.3 0.063 2.2E-06 40.8 11.1 90 449-540 18-114 (126)
231 3mkq_B Coatomer subunit alpha; 96.2 0.33 1.1E-05 39.4 15.3 104 272-393 13-116 (177)
232 3mkq_B Coatomer subunit alpha; 96.2 0.23 7.7E-06 40.4 14.3 129 374-526 13-141 (177)
233 4gns_B Protein CSD3, chitin bi 96.1 0.027 9.1E-07 57.8 10.7 55 507-561 344-398 (754)
234 4h7y_A Dual specificity protei 95.4 0.13 4.5E-06 40.1 9.5 110 430-541 11-135 (161)
235 3lpz_A GET4 (YOR164C homolog); 95.3 1.7 5.6E-05 39.6 20.2 167 368-562 37-215 (336)
236 4h7y_A Dual specificity protei 95.2 0.16 5.4E-06 39.7 9.1 98 394-494 10-120 (161)
237 1nzn_A CGI-135 protein, fissio 95.0 0.07 2.4E-06 40.6 6.8 82 484-565 17-105 (126)
238 3u64_A Protein TP_0956; tetrat 94.9 1.9 6.6E-05 38.2 17.8 111 379-494 134-266 (301)
239 4ady_A RPN2, 26S proteasome re 94.1 6.9 0.00024 41.2 32.9 252 272-528 382-657 (963)
240 1y8m_A FIS1; mitochondria, unk 94.0 0.87 3E-05 35.3 10.8 76 465-540 36-117 (144)
241 3ltj_A Alpharep-4; protein eng 93.7 2.7 9.2E-05 35.2 19.8 133 177-309 34-166 (201)
242 3ltm_A Alpha-REP4; protein eng 93.5 3 0.0001 35.2 19.5 146 176-322 38-183 (211)
243 3ltm_A Alpha-REP4; protein eng 93.5 3.1 0.00011 35.1 17.4 156 186-345 17-172 (211)
244 3txn_A 26S proteasome regulato 93.2 4.2 0.00014 38.2 16.4 57 438-494 105-165 (394)
245 3ffl_A Anaphase-promoting comp 93.0 0.77 2.6E-05 36.7 9.3 123 427-561 13-149 (167)
246 3o48_A Mitochondria fission 1 92.9 0.47 1.6E-05 36.2 7.7 77 464-540 36-118 (134)
247 1wy6_A Hypothetical protein ST 92.9 2.5 8.5E-05 32.3 15.1 135 377-530 18-155 (172)
248 3ffl_A Anaphase-promoting comp 92.8 0.57 1.9E-05 37.4 8.3 57 404-460 27-91 (167)
249 3o48_A Mitochondria fission 1 92.4 0.76 2.6E-05 35.1 8.2 73 428-501 36-112 (134)
250 4b4t_P 26S proteasome regulato 92.4 4.8 0.00016 38.8 16.1 181 379-561 29-245 (445)
251 1y8m_A FIS1; mitochondria, unk 92.2 3.1 0.00011 32.2 11.4 70 429-499 36-109 (144)
252 4ady_A RPN2, 26S proteasome re 92.0 14 0.00048 39.0 29.6 296 206-509 343-670 (963)
253 3ltj_A Alpharep-4; protein eng 91.7 5.1 0.00017 33.4 16.3 80 200-279 88-167 (201)
254 1qsa_A Protein (soluble lytic 91.5 13 0.00043 37.5 31.3 344 175-557 76-436 (618)
255 4fhn_B Nucleoporin NUP120; pro 90.9 8.5 0.00029 42.4 18.1 80 332-411 901-985 (1139)
256 2ff4_A Probable regulatory pro 90.7 0.8 2.7E-05 43.4 8.6 59 504-562 175-233 (388)
257 2p58_C Putative type III secre 90.3 3 0.0001 29.7 8.7 60 271-333 47-106 (116)
258 2wpv_A GET4, UPF0363 protein Y 90.1 10 0.00036 34.1 21.5 168 368-562 35-216 (312)
259 2wpv_A GET4, UPF0363 protein Y 89.9 11 0.00037 34.0 21.9 168 267-460 36-216 (312)
260 2uwj_G Type III export protein 89.7 2.8 9.5E-05 29.8 8.1 61 271-334 46-106 (115)
261 1zbp_A Hypothetical protein VP 89.7 0.37 1.3E-05 42.0 4.8 55 478-532 7-63 (273)
262 1v54_E Cytochrome C oxidase po 89.6 1.6 5.5E-05 31.3 7.0 63 412-476 25-87 (109)
263 4fhn_B Nucleoporin NUP120; pro 89.3 4.7 0.00016 44.4 14.4 65 501-565 900-969 (1139)
264 1zbp_A Hypothetical protein VP 89.0 4.3 0.00015 35.5 10.8 119 406-535 6-135 (273)
265 4gns_B Protein CSD3, chitin bi 88.1 4.2 0.00014 41.9 12.0 52 442-495 347-398 (754)
266 1oyz_A Hypothetical protein YI 87.8 14 0.00048 32.6 20.9 19 292-310 203-221 (280)
267 1v54_E Cytochrome C oxidase po 87.3 5.2 0.00018 28.7 8.3 63 116-179 25-87 (109)
268 2ff4_A Probable regulatory pro 87.2 4.7 0.00016 38.1 11.1 71 401-472 175-249 (388)
269 3esl_A Checkpoint serine/threo 87.2 7.3 0.00025 32.3 10.6 46 484-529 95-144 (202)
270 3lpz_A GET4 (YOR164C homolog); 86.4 19 0.00065 32.7 21.4 168 267-460 38-215 (336)
271 2y69_E Cytochrome C oxidase su 85.1 3.6 0.00012 31.3 7.0 61 414-476 70-130 (152)
272 4b4t_P 26S proteasome regulato 85.1 28 0.00095 33.5 22.6 96 399-494 139-244 (445)
273 2uwj_G Type III export protein 83.3 10 0.00035 27.0 9.4 81 148-232 18-98 (115)
274 2p58_C Putative type III secre 82.8 11 0.00037 27.0 10.5 81 148-232 19-99 (116)
275 4a1g_A Mitotic checkpoint seri 82.4 13 0.00046 29.2 9.7 49 519-567 84-134 (152)
276 2y69_E Cytochrome C oxidase su 81.0 9.4 0.00032 29.1 7.8 62 117-179 69-130 (152)
277 4b4t_R RPN7, 26S proteasome re 79.0 14 0.00049 35.3 11.0 94 368-461 133-237 (429)
278 2wvi_A Mitotic checkpoint seri 78.6 20 0.00067 28.7 9.6 30 500-529 96-125 (164)
279 4b4t_R RPN7, 26S proteasome re 76.3 7.9 0.00027 37.1 8.2 96 434-529 133-237 (429)
280 3txn_A 26S proteasome regulato 75.9 52 0.0018 30.8 20.0 127 265-392 20-165 (394)
281 3mv2_A Coatomer subunit alpha; 64.7 55 0.0019 29.4 10.2 44 489-532 194-239 (325)
282 2qx5_A Nucleoporin NIC96; mRNA 62.5 1.4E+02 0.0047 30.3 21.9 41 106-147 157-197 (661)
283 4aez_C MAD3, mitotic spindle c 59.4 50 0.0017 27.9 8.5 48 482-529 131-179 (223)
284 4gq2_M Nucleoporin NUP120; bet 57.0 78 0.0027 33.9 11.8 103 438-546 816-948 (950)
285 1ya0_A SMG-7 transcript varian 56.0 43 0.0015 32.6 8.7 55 506-560 158-212 (497)
286 3esl_A Checkpoint serine/threo 54.8 91 0.0031 25.8 12.2 83 384-468 62-150 (202)
287 2qx5_A Nucleoporin NIC96; mRNA 54.4 1.9E+02 0.0064 29.3 15.2 27 205-231 356-385 (661)
288 2nsz_A Programmed cell death p 53.4 71 0.0024 24.2 8.6 67 267-333 10-81 (129)
289 4gq2_M Nucleoporin NUP120; bet 52.5 2E+02 0.0069 30.8 14.1 49 332-380 899-950 (950)
290 2ion_A PDCD4, programmed cell 50.3 60 0.002 25.5 7.3 67 267-333 12-83 (152)
291 4b4t_S RPN3, 26S proteasome re 50.0 43 0.0015 32.6 7.5 62 433-494 232-296 (523)
292 3kea_A K1L; tropism, ANK repea 49.0 56 0.0019 28.8 8.0 18 79-96 37-54 (285)
293 3bqo_A Telomeric repeat-bindin 47.5 69 0.0024 26.3 7.1 41 508-548 125-165 (211)
294 4b4t_S RPN3, 26S proteasome re 46.6 47 0.0016 32.3 7.2 68 468-535 231-305 (523)
295 2zu6_B Programmed cell death p 45.9 1.5E+02 0.005 26.6 10.0 28 369-396 6-33 (307)
296 1oyz_A Hypothetical protein YI 45.1 1.5E+02 0.0052 25.7 21.5 61 261-324 203-263 (280)
297 3i5p_A Nucleoporin NUP170; hel 42.0 2.6E+02 0.0088 27.4 12.5 67 497-563 175-246 (525)
298 3kea_A K1L; tropism, ANK repea 42.0 1.2E+02 0.0043 26.5 9.2 78 111-196 38-117 (285)
299 2r9g_A AAA ATPase, central reg 41.8 1.5E+02 0.005 24.5 9.4 56 409-466 26-86 (204)
300 4aez_C MAD3, mitotic spindle c 38.4 37 0.0013 28.7 4.5 47 347-393 131-177 (223)
301 3ygs_P Procaspase 9; apoptosis 38.2 43 0.0015 23.8 4.3 62 55-121 25-88 (97)
302 2nsz_A Programmed cell death p 36.6 1.4E+02 0.0046 22.6 7.5 64 368-431 9-77 (129)
303 1te4_A Conserved protein MTH18 36.1 46 0.0016 25.0 4.6 17 170-186 55-71 (131)
304 2cfu_A SDSA1; SDS-hydrolase, l 35.4 87 0.003 31.8 7.6 65 484-551 436-500 (658)
305 2r9g_A AAA ATPase, central reg 34.6 1.9E+02 0.0066 23.8 8.3 46 299-345 15-63 (204)
306 3ctd_A Putative ATPase, AAA fa 34.2 2E+02 0.0069 23.9 8.7 64 402-466 37-108 (213)
307 4a1g_A Mitotic checkpoint seri 33.6 1.7E+02 0.0059 22.9 11.4 54 414-468 82-136 (152)
308 1bpo_A Protein (clathrin); cla 33.3 3.3E+02 0.011 26.1 10.8 149 73-227 332-481 (494)
309 2fe3_A Peroxide operon regulat 32.6 1.4E+02 0.0048 23.0 6.9 45 321-366 13-57 (145)
310 2d2s_A Exocyst complex compone 32.6 1.5E+02 0.005 25.4 7.5 26 467-492 90-115 (235)
311 2ion_A PDCD4, programmed cell 31.3 1.2E+02 0.004 23.8 6.1 64 368-431 11-79 (152)
312 3mkr_B Coatomer subunit alpha; 30.8 2.1E+02 0.0072 25.7 8.3 44 489-532 185-230 (320)
313 3eu9_A Huntingtin-interacting 30.4 2.3E+02 0.0079 23.4 10.4 203 121-327 22-239 (240)
314 2wvi_A Mitotic checkpoint seri 29.6 2.1E+02 0.0073 22.7 12.0 54 415-469 78-132 (164)
315 2p1h_A APAF-1, apoptotic prote 28.5 1.5E+02 0.0052 20.6 7.2 63 53-120 24-86 (94)
316 1k1a_A B-cell lymphoma 3-encod 28.4 2.5E+02 0.0087 23.2 11.3 184 106-294 11-210 (241)
317 2xig_A Ferric uptake regulatio 28.4 2.1E+02 0.0071 22.2 7.3 58 321-380 18-75 (150)
318 2ijq_A Hypothetical protein; s 27.8 1.7E+02 0.0059 23.1 6.5 51 114-164 45-103 (161)
319 2d2s_A Exocyst complex compone 27.5 1.9E+02 0.0066 24.6 7.4 31 497-527 88-118 (235)
320 3ctd_A Putative ATPase, AAA fa 27.4 2.7E+02 0.0092 23.2 8.0 50 296-345 33-85 (213)
321 3bge_A Predicted ATPase; struc 27.2 2.6E+02 0.0089 23.0 8.8 58 403-460 10-75 (201)
322 3ygs_P Procaspase 9; apoptosis 25.5 76 0.0026 22.5 3.8 37 185-221 51-87 (97)
323 3eiq_C Programmed cell death p 24.1 2.7E+02 0.0094 25.5 8.1 92 268-359 221-321 (358)
324 1ug3_A EIF4GI, eukaryotic prot 23.9 4.1E+02 0.014 24.1 11.9 25 368-392 143-167 (339)
325 2b7e_A PRE-mRNA processing pro 23.2 90 0.0031 19.8 3.2 30 117-146 2-31 (59)
326 3qye_A TBC1 domain family memb 23.1 4E+02 0.014 23.9 9.3 129 116-248 164-309 (331)
327 2fe3_A Peroxide operon regulat 23.0 2E+02 0.007 22.0 6.3 36 150-185 35-70 (145)
328 1wgl_A TOLL-interacting protei 22.9 68 0.0023 20.3 2.7 26 545-570 34-59 (59)
329 2p1h_A APAF-1, apoptotic prote 21.3 2.1E+02 0.0072 19.8 6.9 63 155-221 24-86 (94)
330 4ets_A Ferric uptake regulatio 21.2 1.8E+02 0.0061 23.0 5.6 68 312-381 14-84 (162)
331 2zu6_B Programmed cell death p 21.1 2.7E+02 0.0093 24.9 7.4 68 267-334 169-241 (307)
332 3b34_A Aminopeptidase N; prote 21.0 7.6E+02 0.026 26.1 12.6 105 447-557 748-864 (891)
333 2ijq_A Hypothetical protein; s 21.0 3.1E+02 0.011 21.7 7.3 51 410-460 45-103 (161)
334 1n11_A Ankyrin; clathrin, BAND 20.9 5.1E+02 0.017 24.1 11.9 107 180-289 119-234 (437)
335 3ljn_A Hypothetical protein; a 20.8 4.6E+02 0.016 23.6 10.3 86 78-168 25-113 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-43 Score=363.07 Aligned_cols=477 Identities=8% Similarity=-0.017 Sum_probs=392.6
Q ss_pred HHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHH
Q 046956 79 CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 158 (574)
.+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3456788888899999998899999999999999999999999999999854 57888999999999999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC-------------------ChhhHHHHHHHHHhcCChH
Q 046956 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-------------------NVVSWTAMIVGYASVGDLV 219 (574)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 219 (574)
|+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965443 3789999999999999999
Q ss_pred HHHHHHhhcCCCC---cchHHHHHHHHHccCChHHHHHH---HhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHhh
Q 046956 220 EAKTVFDLMPERS---NVSWNALIGGLVKIGDLRSARQL---FDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEA 289 (574)
Q Consensus 220 ~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (574)
+|+++|++|.+.+ ...+..+...+...+..+.+... +..+.+ ....+|+.++..|.+.|++++|.++|++
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 9999999997643 33444444433333222221111 111111 2334566678889999999999999999
Q ss_pred CCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh
Q 046956 290 APD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 290 ~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (574)
+.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+..... . .
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~ 374 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK-A-V 374 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-H-H
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc-H-H
Confidence 987 789999999999999999999999999998765 3467789999999999999999999999998765432 3 3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 78899999999999999999999876 3467899999999999999999999999999864 4567899999999999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH--ASAWGALLGACKLYSD 515 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~ 515 (574)
.|++++|.++|+++.+ ..+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999997 34557899999999999999999999999988 34677 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++|++.++++++.+|+++.++..++.+|...|++++|.+.++++.+.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=336.67 Aligned_cols=473 Identities=8% Similarity=0.011 Sum_probs=401.0
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 143 (574)
.++...++.++ ..|.+.|++++|..+|+++. .|+..+|..++.++.+.|++++|..+|+++... .++..+++.++
T Consensus 81 ~~~~~~~~~~~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWR-HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 46788899999 99999999999999999985 578899999999999999999999999998654 56888999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHh---------------CCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--C-ChhhH
Q 046956 144 KACSHVLSVREGTAIHAAVIRW---------------GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--R-NVVSW 205 (574)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 205 (574)
.++.+.|++++|.++|+++... |.+.+..+|+.++.+|.+.|++++|..+|+++.+ | +...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1233578999999999999999999999999975 3 34455
Q ss_pred HHHHHHHHhcCChHHHHHH---HhhcCCC----CcchHHHHHHHHHccCChHHHHHHHhcCCC--CchhHHHHHHHHHHh
Q 046956 206 TAMIVGYASVGDLVEAKTV---FDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTMIDGYAK 276 (574)
Q Consensus 206 ~~li~~~~~~g~~~~a~~~---~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 276 (574)
..+...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++++.+.+ ++..+++.++..|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544433332222111 2222222 233566668888999999999999998766 889999999999999
Q ss_pred cCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHH
Q 046956 277 VGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 353 (574)
.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998763 467889999999999999999999999998653 557889999999999999999999999
Q ss_pred HHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046956 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430 (574)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 430 (574)
+.+.+..+.. ...+..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|...|++++|.++|+++.+.. +.
T Consensus 397 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQF--GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9998865442 2379999999999999999999999876 3577899999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAW 503 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 503 (574)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 67899999999999999999999999998742 44676 789999999999999999999999987 3344 78899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
..+..+|...|++++|.+.++++++++|+++.++..|+.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-28 Score=237.67 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD--R-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
+|..++..+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444444444444444444443321 1 23344455555555556666666665555432 2234555555556666
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSL 419 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~ 419 (574)
.|++++|...++.+.+.++.. ...+..++..+...|++++|...|++.. . .+..++..+...|...|++++|...
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665544332 2256677777777777777777777655 2 3567888889999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 046956 420 FDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVE 497 (574)
Q Consensus 420 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 497 (574)
|+++.+. .| +..++..+...+.+.|++++|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ...
T Consensus 260 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 260 YRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999985 45 456899999999999999999999999997 45667889999999999999999999999987 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 498 P-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 498 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
| +...+..+...+.+.|++++|+..++++++++|+++.++..++.++...|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 5 467888889999999999999999999999999999999999999988774
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.2e-27 Score=227.91 Aligned_cols=348 Identities=14% Similarity=0.106 Sum_probs=286.9
Q ss_pred HHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCChHHH
Q 046956 210 VGYASVGDLVEAKTVFDLMPE--R-SNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSA 283 (574)
Q Consensus 210 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (574)
..+.+.|++++|++.++.+.+ | +...+..+...+...|++++|...++ ...+.+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555555555432 2 22344444555555666666665555 22245678899999999999999999
Q ss_pred HHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhC
Q 046956 284 RSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360 (574)
Q Consensus 284 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 360 (574)
++.|+++.. .+..+|..++.++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999987753 356789999999999999999999999998763 2245567778888999999999999999999876
Q ss_pred CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 046956 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFT 436 (574)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 436 (574)
+... ..+..++..+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+. .|+ ..++.
T Consensus 166 p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFA--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHG 241 (388)
T ss_dssp TTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHH
Confidence 4433 3789999999999999999999998873 35678999999999999999999999999884 554 56899
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV-EPHASAWGALLGACKLYS 514 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 514 (574)
.+..++...|++++|...|+++.+ ..+.+..+|..++.++.+.|++++|.+.++++ .. ..+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999997 44456788999999999999999999999988 33 346788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2e-26 Score=228.63 Aligned_cols=185 Identities=12% Similarity=0.185 Sum_probs=170.1
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------cchHHHHHHHHHHhCCCCCh
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN---------LDLSNWVDSYLSRSHMDLSR 365 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 365 (574)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+. ++.|..+|+.|.+.|+.|+.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346788899999999999999999999999999999999999999987665 46788999999999999998
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 366 AHVIAALVDMNAKCGNMDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
. +|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+
T Consensus 106 ~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 A-TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp H-HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8 99999999999999999999999886 489999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
|++.|++++|.+++++|.+. +..|+..+|+.++..+...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999997 9999999999999888653
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-24 Score=220.63 Aligned_cols=430 Identities=10% Similarity=-0.008 Sum_probs=225.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 182 (574)
.|......+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|...++.+++.+ +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45555666667777777777777776653 566666666666777777777777777776654 334556666667777
Q ss_pred cCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHH---HHHHHHccCChHHH
Q 046956 183 KRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNA---LIGGLVKIGDLRSA 252 (574)
Q Consensus 183 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~---l~~~~~~~~~~~~a 252 (574)
..|++++|...|+++.. .+......++..+........+.+.+..+... +...+.. ..............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777776666543 22223333333333222222222211111100 0000000 00000011111111
Q ss_pred HHHHhcC---------CC-CchhHHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-CHhHHHHHH
Q 046956 253 RQLFDEM---------PE-RNVVSYTTMIDGYAK---VGDMTSARSLFEAAPD----------------R-DVVAWSALI 302 (574)
Q Consensus 253 ~~~~~~~---------~~-~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 302 (574)
...+... .. .+...+......+.. .|++++|+..|+++.+ + +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 1111111 01 123344444444443 6667777666655433 1 234556666
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCH
Q 046956 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382 (574)
Q Consensus 303 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 382 (574)
..+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+....... ++..++..+...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS--VYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH--HHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH--HHHHHHHHHHHhCCH
Confidence 66666677777777666666543 22555666666666666666666666666654433222 455666666666666
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 383 DRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 383 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
++|...++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666543 2234555666666666666666666666665531 2233455556666666666666666666655
Q ss_pred hhcCCCCc----HHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 460 NVYAIVPS----PEHYACMVDLLGR---TGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 460 ~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
+...-.++ ...+..++..+.. .|++++|.+.++++ ...| +...+..+...+...|++++|...++++++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 43111111 2255556666666 66666666666555 2222 34455555566666666666666666666666
Q ss_pred CCCchhHHHH
Q 046956 531 PQNAGSYVLL 540 (574)
Q Consensus 531 p~~~~~~~~l 540 (574)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 6655555544
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.5e-24 Score=218.92 Aligned_cols=431 Identities=9% Similarity=-0.018 Sum_probs=299.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046956 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180 (574)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 180 (574)
...|..+...+.+.|++++|+..|+++.+... .+...|..+..++...|++++|.+.++.+++.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45677788888999999999999999888743 366788888888889999999999999998876 4467788888999
Q ss_pred HHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHccCChHHHHH
Q 046956 181 YGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER------SNVSWNALIGGLVKIGDLRSARQ 254 (574)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 254 (574)
+...|++++|...|+.+ ..+.......+..+...+...+|+..++.+... ........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999644 322223333455566666678888888888653 12223445555666777777777
Q ss_pred HHhcCCCCchh---HHHHHHHHHHhc--------CChHHHHHHHhhCCC--CC--------HhHHHHHHHHHHhCCCchH
Q 046956 255 LFDEMPERNVV---SYTTMIDGYAKV--------GDMTSARSLFEAAPD--RD--------VVAWSALISGYAQNGQPDE 313 (574)
Q Consensus 255 ~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~ 313 (574)
.+......+.. ....+...+... |++++|..+|+++.+ |+ ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 77755343332 344444433322 478888888887655 22 2346667777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 314 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
|...|+++.+. .|+...+..+...+...|+++.|...+..+.+..+... .++..++..+...|++++|...|+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888875 45577777888888888888888888888887664432 267788888888888888888887765
Q ss_pred C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC----
Q 046956 394 N---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP---- 466 (574)
Q Consensus 394 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---- 466 (574)
+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.....+
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 2 345677778888888888888888888887742 33445777778888888888888888888765411111
Q ss_pred cHHHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 467 SPEHYACMVDLLGRT----------GHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
....+.....++... |++++|...++++ ...| +...+..+...+...|++++|...+++++++.|+++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 122244445666666 8888888888776 3333 456677777778888888888888888888888776
Q ss_pred hhHHH
Q 046956 535 GSYVL 539 (574)
Q Consensus 535 ~~~~~ 539 (574)
.....
T Consensus 497 ~~~~~ 501 (537)
T 3fp2_A 497 EKLQA 501 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-23 Score=211.49 Aligned_cols=419 Identities=9% Similarity=-0.024 Sum_probs=311.3
Q ss_pred HHHhcCCChHHHHHHhhccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHH
Q 046956 78 LCHSLATPLSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 155 (574)
..+.+.|++++|...|+++. .|+..+|..+..++.+.|++++|+..++++.+.+. .+...+..+..++...|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHH
Confidence 77888999999999999986 58899999999999999999999999999988743 3567888899999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC----CChhhHHHH---HHHHHhcCChHHHHHHHhhc
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE----RNVVSWTAM---IVGYASVGDLVEAKTVFDLM 228 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~ 228 (574)
...|+.+.+.+. ++......++..+........+.+.+..+.. ++...+... ............+...+...
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999998863 4444444555544443333322222211110 110000000 00001111111122222222
Q ss_pred C---------CC-CcchHHHHHHHHHc---cCChHHHHHHHhcCCC-----------------CchhHHHHHHHHHHhcC
Q 046956 229 P---------ER-SNVSWNALIGGLVK---IGDLRSARQLFDEMPE-----------------RNVVSYTTMIDGYAKVG 278 (574)
Q Consensus 229 ~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g 278 (574)
. .+ +...+......+.. .|++++|...++.... .+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 1 11 13344444444444 8999999999984322 23567888999999999
Q ss_pred ChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHH
Q 046956 279 DMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356 (574)
Q Consensus 279 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 356 (574)
++++|...|+++.+ |+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 252 ~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999987653 347889999999999999999999999998764 446678888999999999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-
Q 046956 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD- 431 (574)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~- 431 (574)
.+..+.... .+..++..+...|++++|...++.+.+ .+...|..+...+...|++++|...++++.+... .++
T Consensus 331 ~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPENIF--PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSSCSH--HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 987655433 788999999999999999999998762 4667899999999999999999999999887421 111
Q ss_pred ---HHHHHHHHHHHhc---cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 046956 432 ---EVAFTIVLTACSH---VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAW 503 (574)
Q Consensus 432 ---~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 503 (574)
...+..+...+.. .|++++|...++++... .+.+...+..++.+|.+.|++++|.+.++++ ...|+....
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 3388899999999 99999999999999873 3456788899999999999999999999988 555664433
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.1e-24 Score=216.25 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC---------
Q 046956 312 DEAVKIFSDMCSKNVQPDE-FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN--------- 381 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 381 (574)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|..+|+.|.+.|+.|+.. +|+.|+.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcch
Confidence 3455666777777766544 468889999999999999999999999999999998 99999999987664
Q ss_pred HHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046956 382 MDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457 (574)
Q Consensus 382 ~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 457 (574)
+++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 788999999987 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 046956 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLY 513 (574)
Q Consensus 458 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 513 (574)
|.+. |+.||..+|+.|+.+|++.|+.++|.+++++| +..|+..|++.++..+...
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9997 99999999999999999999999999999999 6889999999999887653
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.5e-22 Score=200.32 Aligned_cols=333 Identities=12% Similarity=0.049 Sum_probs=241.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 046956 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280 (574)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (574)
+...|..+...+.+.|++++|+.+|+++.+.+ +.+..++..++..|...|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~l~~~~~~~g~~ 76 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKS 76 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------CccHHHHHHHHHHHHHCCCH
Confidence 44567777777777777777777777654311 23455566666666666666
Q ss_pred HHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHh
Q 046956 281 TSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSL------------MSACS 341 (574)
Q Consensus 281 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~ 341 (574)
++|+..|+++.+ .+..+|..++.+|.+.|++++|...|+++.+. .|+. ..+..+ ...+.
T Consensus 77 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 77 KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665442 34556666777777777777777777776654 2332 333333 33467
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
..|++++|...++.+.+..+... .++..++.+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+.
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888888888888877654322 267888888888888888888888876 3567888999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHHhhcCC
Q 046956 419 LFDRMLSEGLTPDEV-AFTIV------------LTACSHVGLVEDGWRFFEAMQNVYAIVPS--PEHYACMVDLLGRTGH 483 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 483 (574)
.|+++.+. .|+.. .+..+ ...+.+.|++++|...|+++.+.....+. ...+..++.++.+.|+
T Consensus 233 ~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 233 EVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence 99999874 45443 44444 77889999999999999999874111111 4578889999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH------------HHHhcC-
Q 046956 484 LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN------------IYATAD- 548 (574)
Q Consensus 484 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g- 548 (574)
+++|.+.++++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++. .|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999987 4445 57888999999999999999999999999999999999999984 455566
Q ss_pred ----CchHHHHHHHH-HHhCCCcc
Q 046956 549 ----RWLDVCLVRSK-MKERGLRK 567 (574)
Q Consensus 549 ----~~~~a~~~~~~-~~~~~~~~ 567 (574)
+.+++.+.+++ ..+..+.+
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 56677877776 44444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.7e-22 Score=198.32 Aligned_cols=301 Identities=14% Similarity=0.074 Sum_probs=256.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.+...+..++..|.+.|++++|+.+|+++.+ .+..+|..++.++...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35567888999999999999999999998753 468899999999999999999999999998874 44678889999
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCCh-hhHHHHH------------HHHhHhcCCHHHHHHHHhhCC---CCChhHHH
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSR-AHVIAAL------------VDMNAKCGNMDRAAELFETMP---NRDVVSYC 401 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 401 (574)
.++...|++++|...++.+.+..+.... ...+..+ +..+.+.|++++|...|+.+. ..+...+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999886544320 0244444 555899999999999999876 35778899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH-------
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM------- 474 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l------- 474 (574)
.++.+|...|++++|...|+++.+.. +.+..++..++..+...|++++|...|+++... .+.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 99999999999999999999998853 445679999999999999999999999999863 33344555544
Q ss_pred -----HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 475 -----VDLLGRTGHLKSAYELLNSM-PVEPH-----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 475 -----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
+..+.+.|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|+..++++++..|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 88999999999999999988 44454 34677788999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCC
Q 046956 544 YATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|...|++++|...++++.+...
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHhCc
Confidence 9999999999999999987543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.5e-21 Score=199.35 Aligned_cols=417 Identities=9% Similarity=-0.008 Sum_probs=318.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh
Q 046956 71 LVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147 (574)
Q Consensus 71 ~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 147 (574)
.+..+- ..+.+.|++++|...|+++. +.++.+|..+..++.+.|++++|++.|+++.+.+. .+...+..+..++.
T Consensus 27 ~~~~~g-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRG-NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE 104 (537)
T ss_dssp HHHHHH-HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 344444 78889999999999999985 45788999999999999999999999999988743 36678888889999
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCChHHH
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER------NVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a 221 (574)
..|++++|...|+ .... .|+.. ...+..+...+....|...++++... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999996 3332 22221 22234444555667888888887642 222334556667778888888
Q ss_pred HHHHhhcCCCCcc---hHHHHHHHHHc--------cCChHHHHHHHhcCCC--Cc--------hhHHHHHHHHHHhcCCh
Q 046956 222 KTVFDLMPERSNV---SWNALIGGLVK--------IGDLRSARQLFDEMPE--RN--------VVSYTTMIDGYAKVGDM 280 (574)
Q Consensus 222 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~ 280 (574)
...+......+.. ....+...+.. .|++++|..+++.+.+ |+ ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 8887777665443 33333333322 2478889988884432 32 23577778889999999
Q ss_pred HHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHH
Q 046956 281 TSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358 (574)
Q Consensus 281 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 358 (574)
++|...|++..+ |+..+|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988753 567889999999999999999999999998764 44678899999999999999999999999998
Q ss_pred hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CC
Q 046956 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-----TP 430 (574)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p 430 (574)
..+.... .+..++..+...|++++|...++++. ..+...+..+...+...|++++|...|+++.+... ..
T Consensus 339 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPENVY--PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTTCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 7755443 78899999999999999999999876 34567899999999999999999999999886421 11
Q ss_pred CHHHHHHHHHHHhcc----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 431 DEVAFTIVLTACSHV----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
....+......+... |++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.|+++ ...|+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 122345556677777 9999999999999973 4456788999999999999999999999987 44444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.3e-20 Score=178.81 Aligned_cols=301 Identities=15% Similarity=0.086 Sum_probs=159.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcC---CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhC
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQN 308 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 308 (574)
.+..+...+...|++++|...++.. .+.+..++..+...+...|++++|+..|+++.+ .+...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 3444555555555666555555522 123344555555555555555555555554432 2344555555555555
Q ss_pred CCchHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH
Q 046956 309 GQPDEAVKIFSDMCSKNVQP----DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384 (574)
Q Consensus 309 ~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (574)
|++++|...|+++.+. .| +...+..+..... ...+..++..+...|++++
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCHHH
Confidence 5555555555555543 22 1222222210000 0011122455566666666
Q ss_pred HHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 385 AAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 385 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666554 2344556666666666666666666666666532 223445666666666666666666666666552
Q ss_pred cCCCCcHHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHH
Q 046956 462 YAIVPSPEHYA------------CMVDLLGRTGHLKSAYELLNSM-PVEPH-A----SAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 462 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
.+.+...+. .++..+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|+..+
T Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 222222222 2244566666666666666655 22232 2 12233445566666666666666
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+++++.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.2e-19 Score=172.93 Aligned_cols=318 Identities=11% Similarity=0.017 Sum_probs=234.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHccCChHHHHHHHhc---CCCCchhHHHHHHHHH
Q 046956 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSNVSWNALIGGLVKIGDLRSARQLFDE---MPERNVVSYTTMIDGY 274 (574)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~ 274 (574)
|+..+..+...+...|++++|+..|+++.+ .+...+..+...+...|++++|...++. ..+.+...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 356788889999999999999999999865 3566888999999999999999999994 3245678899999999
Q ss_pred HhcCChHHHHHHHhhCCC--C----CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcch
Q 046956 275 AKVGDMTSARSLFEAAPD--R----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 348 (574)
...|++++|...|+++.+ | +...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 999999999999998765 3 2334443321100 0112223334445555555
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
|...++.+.+..+... ..+..++..+...|++++|...++++.+ .+...|..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555554433222 2566677777777777777777776542 3566777788888888888888888888877
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHHhhcCCHHHHH
Q 046956 426 EGLTPDE-VAFT------------IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 426 ~g~~p~~-~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 488 (574)
. .|+. ..+. .+...+.+.|++++|...++++.+. .+.+. ..+..++.++...|++++|.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4 3433 2332 2356688899999999999999874 22233 33556788999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 489 ELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 489 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
+.++++ ...| +...+..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999988 3345 6778888889999999999999999999999999999999888876543
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=7e-17 Score=169.76 Aligned_cols=454 Identities=12% Similarity=0.130 Sum_probs=334.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC------CCChhhHHHHHHHHHhCCCchHHHHHHHHh
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV------NPNTFLWNTLLKGYSQNSRFIEVFTIFVRL 127 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 127 (574)
+..-+++++. .|+..|+.++ ..+-+.-+.+.++.. ..++.--...+.+|...|.+.+|++++++.
T Consensus 941 k~~arylv~r---~d~~lW~~vl------~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKi 1011 (1630)
T 1xi4_A 941 KSLSRYLVRR---KDPELWGSVL------LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKI 1011 (1630)
T ss_pred HHHHHHHHHh---cCHHHHHHHh------cCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4455566663 5677777666 122233344554432 345555567788999999999999999998
Q ss_pred HhCCC--CCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhH
Q 046956 128 IREEA--VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205 (574)
Q Consensus 128 ~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (574)
.-.+. .-+...-+.++.+..+. +..+..++...+.. .....+...+...|.+++|..+|++... ...+.
T Consensus 1012 vl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~ 1082 (1630)
T 1xi4_A 1012 VLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFDV-NTSAV 1082 (1630)
T ss_pred HcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHH
Confidence 84421 12334555566655555 55666666655431 1234577888899999999999999752 22223
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 046956 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285 (574)
Q Consensus 206 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (574)
+.++. ..|++++|.+++++.. ++.+|..+..++...|++++|...|.. ..|...|..++..+.+.|++++|.+
T Consensus 1083 ~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK--AdD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1083 QVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh--cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 33332 7789999999999774 567899999999999999999999976 4778888899999999999999999
Q ss_pred HHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCC
Q 046956 286 LFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363 (574)
Q Consensus 286 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (574)
.+....+ ++....+.++.+|++.+++++..... + .++...+..+...|...|++++|..+|..+.
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ 1222 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------ 1222 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh------
Confidence 9976543 33334445899999999888544332 2 3466777789999999999999999999862
Q ss_pred ChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.|..++..|.+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.
T Consensus 1223 ----ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 ----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 1291 (1630)
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHH
Confidence 79999999999999999999999884 568999999999999999999887654 3345556778899999
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh--cCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcC
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR--TGHLKSAYELLNSM-PVEP------HASAWGALLGACKLYS 514 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~ 514 (574)
+.|.+++|+.+++..... -+-....|+.+..+|.+ -++..++.++|.+- .+.| +...|..+...|.+.|
T Consensus 1292 ~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred HcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999888742 23345667666666654 55777888877654 3222 4667888999999999
Q ss_pred CHHHHHHHHHHHHh------------hCCCCchhHHHHHHHHHhcC---------------CchHHHHHHH
Q 046956 515 DIELGELVANRLFE------------LEPQNAGSYVLLSNIYATAD---------------RWLDVCLVRS 558 (574)
Q Consensus 515 ~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 558 (574)
+++.|....-+-.. ..+.++..|+..+..|...+ +.+.+.++++
T Consensus 1370 e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1370 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 99999843322211 16778899998888888777 7777777765
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.8e-19 Score=169.24 Aligned_cols=287 Identities=11% Similarity=0.020 Sum_probs=225.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.+...+..++..+...|++++|+++|+++.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45666777777888888888888888877653 345566677788888888888888888887753 33566777778
Q ss_pred HHHhccC-CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh
Q 046956 338 SACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 338 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 413 (574)
..+...| ++++|...++.+.+..+.... .+..++..+...|++++|...++++.+ .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGP--AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 8888888 888888888888876544333 688888899999999999999888762 3456777788899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC-------CCCcHHHHHHHHHHHhhcCCHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA-------IVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998853 34456888888899999999999999998886421 13446788899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhcCCch
Q 046956 487 AYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY-ATADRWL 551 (574)
Q Consensus 487 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 551 (574)
|.+.++++ ...| +...+..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999887 3333 5677888889999999999999999999999999999999999988 4556543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.1e-16 Score=164.93 Aligned_cols=382 Identities=13% Similarity=0.082 Sum_probs=289.6
Q ss_pred chHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 046956 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGV--DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214 (574)
Q Consensus 137 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 214 (574)
.-....++++...|.+.++.++++++.-.+- .-+...-+.|+.+..+. +..+..++.++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3445567788889999999999998884321 12334556666666665 5566666666554322 4557788889
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 046956 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294 (574)
Q Consensus 215 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 294 (574)
.|.+++|..+|++....+ ...+.+ +...+++++|.++.++. .+..+|..+..++.+.|++++|++.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~~-~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNT-SAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCHH-HHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 999999999999974221 112222 23788999999999976 44778889999999999999999999775 57
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (574)
...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .+... .+..++.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a-d~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA-HIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH-HHHHHHH
Confidence 7888889999999999999999999887764 34333445888999998887544442 1 22333 5667999
Q ss_pred HhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046956 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
.|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999986 48999999999999999999999876 3557899999999999999999887
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhC
Q 046956 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACK--LYSDIELGELVANRLFELE 530 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 530 (574)
...+ ..++..+..++..|.+.|.+++|+.+++.. +.++. ...|..+...+. +.++..++.+.|..-..+.
T Consensus 1273 gl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 6543 346677889999999999999999999877 55543 345555555554 4456666777777655555
Q ss_pred C-----CCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 531 P-----QNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 531 p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
| .+...|..+..+|.+.|+|+.|...+
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5 67888999999999999999998543
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.3e-19 Score=171.10 Aligned_cols=240 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred hcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHH
Q 046956 81 SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160 (574)
Q Consensus 81 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 160 (574)
.+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57889999999999996654 8999999999999999999999653 577799999999999999999999888
Q ss_pred HHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH
Q 046956 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240 (574)
Q Consensus 161 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 240 (574)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..+...|...|++++|..+|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77764 45578889999999999999999888864 77789999999999999999999999987 4788899
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
.++.+.|++++|.+.+... .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999877 378889999999999999999977776655 3444444688888888999999888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc
Q 046956 321 MCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
..... +-....|+.+..++++
T Consensus 233 aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHT
T ss_pred HhCCc-HHHHHHHHHHHHHHHh
Confidence 87543 3445556655555543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.5e-18 Score=169.86 Aligned_cols=365 Identities=12% Similarity=0.009 Sum_probs=254.9
Q ss_pred CcchHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCChHHHHHHHccCCC-CChhhH
Q 046956 135 DKYTFPLVIKACSH----VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK----RKEISCARKVFDEMPE-RNVVSW 205 (574)
Q Consensus 135 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 205 (574)
+...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|...|++..+ .+..++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444 555566666665555543 33444555555555 5555555555555433 233444
Q ss_pred HHHHHHHHh----cCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHh----c
Q 046956 206 TAMIVGYAS----VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK----V 277 (574)
Q Consensus 206 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~ 277 (574)
..|...|.. .+++++|+..|++..+ ..+...+..+...|.. .
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------------------------------~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAE------------------------------QGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------------------TTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHcCCCCC
Confidence 444444444 4455555555444322 2345566666666766 6
Q ss_pred CChHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCcch
Q 046956 278 GDMTSARSLFEAAPD-RDVVAWSALISGYAQ----NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----VGNLDL 348 (574)
Q Consensus 278 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 348 (574)
+++++|.+.|++..+ .+..++..+...|.. .+++++|...|++..+.| +...+..+...+.. .++.++
T Consensus 165 ~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 778888888776543 466777778888877 788888888888887765 45566666666664 678888
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHc-----CChHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAK----CGNMDRAAELFETMPN-RDVVSYCSMIKGLSIH-----GHGRQAVS 418 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~ 418 (574)
|..+++...+.+. .. .+..+..+|.. .++.++|.++|++..+ .+...+..+...|... +++++|+.
T Consensus 242 A~~~~~~a~~~~~---~~-a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 242 SRVLFSQSAEQGN---SI-AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHTTTC---HH-HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHCCC---HH-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 8888888876542 22 56677788877 8899999999988764 5667788888888877 89999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHH
Q 046956 419 LFDRMLSEGLTPDEVAFTIVLTACSHVG---LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKSAYELL 491 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~ 491 (574)
+|++..+.| +...+..+...|...| ++++|.++|++..+. .++..+..+...|.. .+++++|.+.|
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999865 4456677777776656 889999999999874 467788888888888 89999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 046956 492 NSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQ---NAGSYVLLSNIYAT 546 (574)
Q Consensus 492 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 546 (574)
++.-...+...+..+...|.. .+++++|...|+++.+.+|+ ++.+...|+.++..
T Consensus 391 ~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 391 RKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 988333467788888888887 89999999999999999854 77777777776554
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-18 Score=165.73 Aligned_cols=266 Identities=11% Similarity=0.001 Sum_probs=229.9
Q ss_pred CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 293 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...+..+.+..+.... .+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--SWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--HHHHH
Confidence 456677888899999999999999999998764 334556666778889999999999999999987655443 78899
Q ss_pred HHHhHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046956 373 VDMNAKCG-NMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448 (574)
Q Consensus 373 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 448 (574)
+..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998763 456789999999999999999999999999853 33456777899999999999
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV----------EPHASAWGALLGACKLYSDIE 517 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~ 517 (574)
++|...++++.+ ..+.+...+..++..+...|++++|.+.++++ .. ......+..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999997 45556789999999999999999999999876 11 234568888999999999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999887654
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.8e-19 Score=172.13 Aligned_cols=277 Identities=10% Similarity=-0.036 Sum_probs=193.3
Q ss_pred cCChHHHHH-HHhhCCC--C-----CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcch
Q 046956 277 VGDMTSARS-LFEAAPD--R-----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 277 ~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 348 (574)
.|++++|.. .|++... + +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554332 1 23345555666666666666666666665542 2344555555666666666666
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHH---------------HHHHHHHc
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCS---------------MIKGLSIH 410 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 410 (574)
|...++.+.+..+.. ...+..++..|...|++++|.+.++++.+ | +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDN--QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666665554322 22556666666666666666666665442 1 1111110 13333488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
|++++|...++++.+. .|+ ..++..+...+...|++++|...++++... .+.+...+..++.++...|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999985 444 678999999999999999999999999873 445678899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhcCCchHHH
Q 046956 488 YELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN-----------AGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 488 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 554 (574)
.+.++++ ...| +...+..+...+...|++++|+..+++++++.|++ +.++..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 3344 57788888899999999999999999999998887 789999999999999999999
Q ss_pred HHHHHH
Q 046956 555 LVRSKM 560 (574)
Q Consensus 555 ~~~~~~ 560 (574)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4.6e-17 Score=165.40 Aligned_cols=410 Identities=10% Similarity=0.080 Sum_probs=268.4
Q ss_pred HHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CC
Q 046956 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RN 201 (574)
Q Consensus 124 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 201 (574)
|++.++.. +-+...|..++.. ...|++++|..+|+.+++.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44444442 2256677777774 67788889999998888763 45666788888888888899999998888775 66
Q ss_pred hhhHHHHHHH-HHhcCChHHHHH----HHhhcCC------CCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHH
Q 046956 202 VVSWTAMIVG-YASVGDLVEAKT----VFDLMPE------RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270 (574)
Q Consensus 202 ~~~~~~li~~-~~~~g~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 270 (574)
...|..++.. ....|+.++|.+ +|+.... .+...|...+....+... .+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~-------------~~------- 138 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA-------------VG------- 138 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC-------------CS-------
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC-------------cc-------
Confidence 6677766643 234566666554 4444321 122333333333322000 00
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CC---HhHHHHHHHHH-------------HhCCCchHHHHHHHHH------HHCC--
Q 046956 271 IDGYAKVGDMTSARSLFEAAPD-RD---VVAWSALISGY-------------AQNGQPDEAVKIFSDM------CSKN-- 325 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~li~~~-------------~~~~~~~~A~~~~~~m------~~~~-- 325 (574)
.+...|+++.|..+|++..+ |. ...|....... ...+++..|..++.+. .+..
T Consensus 139 --~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 139 --SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp --STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred --cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 00013444444444444332 11 01121111100 1234456666666552 2211
Q ss_pred -CCCC--------HHHHHHHHHHHhcc----CCc----chHHHHHHHHHHhCCCCChhhHHHHHHHHhHh-------cCC
Q 046956 326 -VQPD--------EFILVSLMSACSQV----GNL----DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK-------CGN 381 (574)
Q Consensus 326 -~~p~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~ 381 (574)
++|+ ...|...+...... ++. +.+..+++.++...+.. ..++..++..+.+ .|+
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~--~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhchhhhhccc
Confidence 2443 23444444332221 222 25667888888765433 2378888888775 688
Q ss_pred HH-------HHHHHHhhCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcH
Q 046956 382 MD-------RAAELFETMPN---R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLV 448 (574)
Q Consensus 382 ~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~ 448 (574)
++ +|..+|++..+ | +...|..++..+...|++++|..+|+++++ ..|+. ..|..++..+.+.|++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCH
Confidence 87 89999998763 4 567899999999999999999999999998 45653 4788888888899999
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDL-LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
++|..+|+++.+. .+.+...|...+.. +...|+.++|.++|++. ...| +...|..++..+.+.|+.++|..+|++
T Consensus 373 ~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 373 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999863 22233444333322 34689999999999987 3345 577888888999999999999999999
Q ss_pred HHhhCCCCch----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 526 LFELEPQNAG----SYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 526 ~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
++...|.++. +|...+......|+.+.+..+.+++.+.-
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9998877665 78788888889999999999999887644
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.4e-17 Score=152.81 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=204.0
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc
Q 046956 272 DGYAKVGDMTSARSLFEAAPDRD----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 347 (574)
+-....|+++.|+..++.....+ ......+.++|...|+++.|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33455677777777777655432 234455677777788887777655431 3456667777777777777788
Q ss_pred hHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
.|...++.+...+..|+....+..++..+...|++++|.+.+++ ..+...+..++..|.+.|++++|...++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 88888887776654454444778888999999999999999998 567789999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 046956 428 LTPDEVAF---TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASA 502 (574)
Q Consensus 428 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 502 (574)
.|+.... ..++..+...|++++|..+|+++.+ ..+.+...++.++.++.+.|++++|.+.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4664321 2233444566999999999999998 45678889999999999999999999999987 4455 5778
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 503 WGALLGACKLYSDIEL-GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
+..++..+...|+.++ +.++++++++++|+++.+.. ...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 8888888888998865 67899999999999987654 3444445555443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.7e-16 Score=159.52 Aligned_cols=350 Identities=13% Similarity=0.039 Sum_probs=273.8
Q ss_pred CcchHHHHHHHHHc----CCChHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHhhcCCCCcchHHHHH
Q 046956 170 DVFVGTSLIDLYGK----RKEISCARKVFDEMPE-RNVVSWTAMIVGYAS----VGDLVEAKTVFDLMPERSNVSWNALI 240 (574)
Q Consensus 170 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~ 240 (574)
+...+..|...|.. .+++++|...|++..+ .+..++..|...|.. .++.++|+++|++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---------- 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------
Confidence 45555555555555 5666666666665443 344455555555555 5555555555554321
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCCc
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK----VGDMTSARSLFEAAPD-RDVVAWSALISGYAQ----NGQP 311 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~ 311 (574)
..+...+..|...|.. .+++++|++.|++..+ .+..++..+...|.. .+++
T Consensus 108 --------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 --------------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred --------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 2355666777778877 7899999999987654 467788889888887 7899
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh----cCCHH
Q 046956 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK----CGNMD 383 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 383 (574)
++|+..|++..+.| +...+..+...|.. .++.++|...+....+.+. .. .+..+..+|.. .++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~-a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---EL-GQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HH-HHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HH-HHHHHHHHHHcCCCCCCCHH
Confidence 99999999998875 56777788888877 8899999999999988653 23 67788888886 89999
Q ss_pred HHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHH
Q 046956 384 RAAELFETMPN-RDVVSYCSMIKGLSI----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV-----GLVEDGWR 453 (574)
Q Consensus 384 ~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~~ 453 (574)
+|.++|++..+ .+...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|..
T Consensus 241 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 241 QSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 99999998764 567788888888888 899999999999998764 455677777777776 89999999
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTG---HLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRL 526 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 526 (574)
.|++..+. + +...+..+...|...| ++++|++.|++.-...+...+..+...|.. .+++++|+..++++
T Consensus 318 ~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 318 WYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999874 2 4567788888888766 889999999988333577888888888888 89999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 046956 527 FELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (574)
.+.+ ++.++..|+.+|.. .+++++|...|++..+.+.
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8864 68899999999998 8999999999999988763
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.4e-17 Score=165.24 Aligned_cols=366 Identities=11% Similarity=0.038 Sum_probs=217.0
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCCC------------CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHH
Q 046956 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPE------------RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237 (574)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 237 (574)
....|+.|...+...|++++|++.|++..+ ....+|+.+...|...|++++|+..+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 345678888888888888888887765431 1235677777777777777777776665421
Q ss_pred HHHHHHHccCChHHHHHHHhcCC----CCchhHHHHHHHHHHhc--CChHHHHHHHhhCCC---CCHhHHHHHHHH---H
Q 046956 238 ALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKV--GDMTSARSLFEAAPD---RDVVAWSALISG---Y 305 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~~---~ 305 (574)
+..... .....++..+..++... +++++|+..|++..+ .+...+..+..+ +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 111110 11234454444444443 356777777766542 234444444433 3
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS----QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
...++.++|++.+++..+.. +.+...+..+...+. ..++.++|...++......+.... ++..++..|...|+
T Consensus 186 ~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD--VLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH--HHHHHHHHHHHcCc
Confidence 34566677777777766543 223444444443333 345567777777777665543332 56777777777888
Q ss_pred HHHHHHHHhhCCC--C-ChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046956 382 MDRAAELFETMPN--R-DVVSYCSMIKGLSI-------------------HGHGRQAVSLFDRMLSEGLTPD-EVAFTIV 438 (574)
Q Consensus 382 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 438 (574)
+++|.+.+++..+ | +..++..+...|.. .+.+++|...+++..+. .|+ ..++..+
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhH
Confidence 8888777777652 3 34455555554432 23467788888888874 444 4478888
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcH--HHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSP--EHYACMVD-LLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYS 514 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~ 514 (574)
...+...|++++|...|+++.+. ...+.. ..+..+.. .+...|++++|++.|++. .+.|+......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--------- 410 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--------- 410 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------
Confidence 99999999999999999999874 332221 22333333 245789999999999887 56666543322
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCcccC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 574 (574)
....+.+++++.++.+|+++.++..|+.+|...|++++|.+.|++..+.+.......+|+
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234566778888999999999999999999999999999999999999887666666654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.4e-16 Score=161.94 Aligned_cols=407 Identities=11% Similarity=0.096 Sum_probs=287.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHH
Q 046956 98 NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177 (574)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 177 (574)
+.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|++++... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347788999998 488999999999999999873 3366788899999999999999999999998864 577777777
Q ss_pred HHH-HHcCCChHHHHH----HHccCC-----C-CChhhHHHHHHHHHh---------cCChHHHHHHHhhcCCC-Cc---
Q 046956 178 IDL-YGKRKEISCARK----VFDEMP-----E-RNVVSWTAMIVGYAS---------VGDLVEAKTVFDLMPER-SN--- 233 (574)
Q Consensus 178 i~~-~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~-~~--- 233 (574)
+.. ....|+.+.|.+ +|++.. + .+...|...+..... .|++++|..+|++..+. ..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345677777665 666542 1 356678887776654 68899999999988762 11
Q ss_pred chHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh-------CC------CCC------
Q 046956 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA-------AP------DRD------ 294 (574)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~------ 294 (574)
..|..........|. ..+..++.. +.++++.|..++.. +. .|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 122211111100110 111111111 22344555544432 11 111
Q ss_pred --HhHHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCcc-------hHH
Q 046956 295 --VVAWSALISGYAQN----GQP----DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ-------VGNLD-------LSN 350 (574)
Q Consensus 295 --~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~ 350 (574)
...|...+...... ++. +++..+|++.... .+-+...|..+...+.. .|+.+ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 24565555443332 232 3778889988875 24467777777777764 68887 889
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-V-VSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 426 (574)
.+++...+.- .|....++..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|..+|++..+.
T Consensus 307 ~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 307 NIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999888622 233333889999999999999999999998763 43 3 58999999999999999999999999985
Q ss_pred CCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC-
Q 046956 427 GLTPD-EVAFTIVLTA-CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEPH- 499 (574)
Q Consensus 427 g~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~- 499 (574)
.|+ ...|...+.. +...|++++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|+++ . ..|+
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 333 3344333322 34689999999999999874 3456789999999999999999999999987 2 2332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 500 -ASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 500 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
...|...+......|+.+.+..+.+++.+..|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 457888888888999999999999999999884
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.1e-17 Score=156.07 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=137.4
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHH
Q 046956 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192 (574)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 192 (574)
+.|+.++|.+.++++ ++..+|..+..++.+.|++++|++.|.+ .+|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567899999999988 2345899999999999999999999965 3577799999999999999999999
Q ss_pred HHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHH
Q 046956 193 VFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270 (574)
Q Consensus 193 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 270 (574)
.++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 8877765 556788999999999999999988875 367779999999999999999999999977 489999
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
+.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ ..++.-...++..|.+.|.++++.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999984 8999999999999999999996655542 233344557888999999999999
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHh--cCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCChHHHHHH
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAK--CGNMDRAAELFETMPN--------RDVVSYCSMIKGLSIHGHGRQAVSL 419 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~ 419 (574)
.+++...... +....++..+..+|++ .+++.+..+.|..-.. .+...|..+.-.|...++++.|...
T Consensus 228 ~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 228 TMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999988655 2223378888877776 4567777777765543 3567899999999999999998863
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=5.5e-18 Score=163.73 Aligned_cols=255 Identities=13% Similarity=-0.014 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
.+..+...+.+.|++++|++.|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~---------- 135 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA---------- 135 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH----------
Confidence 355555555555555555555554432 234455555555555555555555555554432 122334
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-----------ChhHHHHHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-----------DVVSYCSMIKGLSI 409 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~li~~~~~ 409 (574)
+..++..|...|++++|...|+++.+ | ....+..+...+..
T Consensus 136 --------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 136 --------------------------LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp --------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred --------------------------HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 44455555555555555555554432 1 12234456778888
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++.+ ..+.+..++..++.+|...|++++|+
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999885311 1467888999999999999999999999987 34556789999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCchHHH
Q 046956 489 ELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ------------NAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 489 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
+.|+++ ...| +...+..+...|...|++++|+..+++++++.|+ +..++..|+.++...|+.+.+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 999987 4445 4778888889999999999999999999999876 4678999999999999999888
Q ss_pred HHHHH
Q 046956 555 LVRSK 559 (574)
Q Consensus 555 ~~~~~ 559 (574)
...++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87754
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=8.7e-18 Score=159.51 Aligned_cols=273 Identities=11% Similarity=0.015 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 265 VSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341 (574)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 341 (574)
..+..+...+...|++++|..+|+++.+ .+..+|..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3445555666666666666666655432 244555556666666666666666666655542 223445555555555
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHH-HH-HHHHcCChHHHHHH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM-IK-GLSIHGHGRQAVSL 419 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~a~~~ 419 (574)
..|++++|...++.+.+..+..... +..+.... ++......+ .. .+...|++++|...
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQL--GSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC----------------------------------------CCTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHH--HHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 5555555555555555443322211 11110000 000011111 22 36677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 046956 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP 498 (574)
Q Consensus 420 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 498 (574)
++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...|
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99998853 335678889999999999999999999999873 4456788999999999999999999999887 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 499 -HASAWGALLGACKLYSDIELGELVANRLFELEPQ------------NAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 499 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+...+..+...+...|++++|...++++++..|+ ++..+..++.++...|++++|..++++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5778888889999999999999999999999999 78899999999999999999999987544
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.8e-17 Score=160.27 Aligned_cols=243 Identities=13% Similarity=0.057 Sum_probs=146.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 338 (574)
.+..++..+...|.+.|++++|++.|+++.+ .+..++..+...+...|++++|...++++.+.... +...+..+
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~-- 172 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPA-- 172 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH--
Confidence 3445556666666666666666666655432 34556666666666666666666666666654211 11111000
Q ss_pred HHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CC---ChhHHHHHHHHHHHcCCh
Q 046956 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NR---DVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~~~~ 413 (574)
+.... ...+. . .+..+...+ ..|++++|...|+++. .| +..++..+...|...|++
T Consensus 173 -----~~~~~-----------~~~~~-~-~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 173 -----EEGAG-----------GAGLG-P-SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp -------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred -----HHHhh-----------hhccc-H-HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH
Confidence 00000 00000 0 111233333 6677777777777665 23 356777777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
++|+..++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.+++
T Consensus 234 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 234 DKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888887777642 233557777777777788888888888877763 334567777777888888888888877776
Q ss_pred C-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 494 M-PVEP------------HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 494 ~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+ ...| ...+|..+..++...|++++|..++++.++.
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 6 1111 1567777778888888888888777765543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.7e-17 Score=148.98 Aligned_cols=248 Identities=9% Similarity=0.021 Sum_probs=200.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDE--FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (574)
++-....|++.+|+..++..... .|+. .....+.++|...|+.+.|...++. . .++....+..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCC
Confidence 45567789999999999887543 4443 3556678899999999998876543 1 333334788899999999
Q ss_pred CCHHHHHHHHhhCC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046956 380 GNMDRAAELFETMP----NR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 380 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
|+.++|.+.++++. .| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 556777888999999999999999987 45667899999999999999999999
Q ss_pred HHHhHhhcCCCCcHHH---HHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 455 FEAMQNVYAIVPSPEH---YACMVDLLGRTGHLKSAYELLNSM-P-VEPHASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
++++.+. .|+... ...++..+...|++++|..+|+++ . ...+...++.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999975 344321 122344555669999999999998 2 3346778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCchH-HHHHHHHHHhCCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLD-VCLVRSKMKERGL 565 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 565 (574)
+|+++.++..++.++...|++++ +.++++++.+.++
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999986 5789998886554
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.5e-17 Score=156.67 Aligned_cols=228 Identities=12% Similarity=0.036 Sum_probs=173.1
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHH
Q 046956 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSI 409 (574)
Q Consensus 333 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 409 (574)
+..+...+...|++++|...++.+.+..+.. ...+..++..|.+.|++++|...|+++. ..+..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD--AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 3333344444444444444444444433222 2267777777888888888888887765 2457889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLTPDEV-----------AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
.|++++|...++++.+. .|+.. .+..+...+...|++++|..+++++.+.....++..++..++..|
T Consensus 146 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 99999999999999883 44432 233457789999999999999999998522222688999999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
...|++++|++.++++ ...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 3344 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 046956 557 RSKMKERG 564 (574)
Q Consensus 557 ~~~~~~~~ 564 (574)
++++.+..
T Consensus 304 ~~~al~~~ 311 (365)
T 4eqf_A 304 FLTALSLQ 311 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99988644
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=5.5e-17 Score=153.97 Aligned_cols=272 Identities=11% Similarity=0.010 Sum_probs=175.7
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHhcC---CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHH
Q 046956 232 SNVSWNALIGGLVKIGDLRSARQLFDEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGY 305 (574)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 305 (574)
+...+..+...+...|++++|..+++.. .+.+...+..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 4456788889999999999999999843 245678899999999999999999999987653 4678899999999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHH--HhHhcCCHH
Q 046956 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD--MNAKCGNMD 383 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~ 383 (574)
...|++++|...++++.+.... +...+..+...+ +... ....+.. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDID-DLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHH-HHHHHHHhHHHHHcccHH
Confidence 9999999999999999876321 222222220000 0000 1111211 244555556
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 384 RAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 384 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665555544 1245566666666666667777777766666532 22345666666666677777777777776665
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-------------ASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
. .+.+...+..++.++...|++++|.+.++++ ...|+ ...+..+..++...|++++|..+++++
T Consensus 235 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 I--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred c--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2334566666677777777777777776665 22222 445666667777777777777777665
Q ss_pred HhhC
Q 046956 527 FELE 530 (574)
Q Consensus 527 ~~~~ 530 (574)
++..
T Consensus 313 l~~~ 316 (327)
T 3cv0_A 313 VEPF 316 (327)
T ss_dssp SHHH
T ss_pred HHhc
Confidence 5543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2e-16 Score=158.61 Aligned_cols=378 Identities=9% Similarity=-0.037 Sum_probs=213.5
Q ss_pred CCcchHHHHHHHHhccCCcHHHHHHHHHHHHh-----C--CCC-CcchHHHHHHHHHcCCChHHHHHHHccCCC------
Q 046956 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-----G--VDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPE------ 199 (574)
Q Consensus 134 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 199 (574)
.....|+.+...+...|++++|++.|++.++. + ..| ...+|+.+..+|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999988653 1 122 345788899999999999999998876542
Q ss_pred -----CChhhHHHHHHHHHhc--CChHHHHHHHhhcCC--C-CcchHHHHHHH---HHccCChHHHHHHHh---cCCCCc
Q 046956 200 -----RNVVSWTAMIVGYASV--GDLVEAKTVFDLMPE--R-SNVSWNALIGG---LVKIGDLRSARQLFD---EMPERN 263 (574)
Q Consensus 200 -----~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~---~~~~~~ 263 (574)
....++..+..++... +++++|++.|++..+ | ++..+..+..+ +...++.++|.+.++ .+.+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1234555555555543 468899999988754 3 33334333333 334455566665555 232344
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhhCC---CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 264 VVSYTTMIDGYAK----VGDMTSARSLFEAAP---DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336 (574)
Q Consensus 264 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 336 (574)
..++..+...+.. .|++++|.+.+++.. ..+..++..+...|...|++++|+..+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4555555444433 345666776666543 2345666677777777777777777777766542 2234444444
Q ss_pred HHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 413 (574)
...|...+.. .... ............+..+.|...+++.. ..+...+..+...|...|++
T Consensus 288 g~~y~~~~~~---------~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVFQ---------VMNL--------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHH---------HHHC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH---------hhhH--------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 4433211100 0000 00001111112234567777777655 24556888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEV--AFTIVLT-ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
++|+..|++.++....+... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHH
Confidence 99999999999854333221 2333333 24578999999999999885 34443222222 2233334
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 491 LNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 491 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
+++. ...| +..+|..+...+...|++++|++.|+++++++|.+|.+...+|
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4333 2233 5678889999999999999999999999999999888877665
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=5.6e-16 Score=137.10 Aligned_cols=190 Identities=13% Similarity=0.046 Sum_probs=153.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 443 (574)
.+..++..+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.++. .|+ ...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 677888888999999999999988763 45678888999999999999999999999984 454 558888888999
Q ss_pred cc-----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 046956 444 HV-----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACK 511 (574)
Q Consensus 444 ~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 511 (574)
.. |++++|...++++.+. .+.+...+..+..++...|++++|++.|+++ ....+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99 9999999999999973 3445788999999999999999999999987 22267888899999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..|++++|+..++++++.+|+++.++..++.++...|++++|...+++..
T Consensus 163 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998654
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-15 Score=138.16 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 046956 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375 (574)
Q Consensus 296 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (574)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 455566666666666666666666666554 4445555555555555555555555554443221110
Q ss_pred hHhcCCHHHHHHHHhhCCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 376 NAKCGNMDRAAELFETMPNRD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
++ ...|..+...+...|++++|...++++.+ ..|+. ..+...|++++|
T Consensus 73 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHH
Confidence 01 34566666667777777777777777766 34442 234455667777
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
...++++.. ..+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777765 33334566667777777777777777777766 2223 4566667777777777788888888877777
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 77777777777877888888888877777766543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-15 Score=138.54 Aligned_cols=234 Identities=10% Similarity=0.056 Sum_probs=179.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCC----HHHHH
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV--QPD----EFILV 334 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~ 334 (574)
....+..+...+...|++++|+..|++..+ .+..+|..+..++...|++++|+..+++..+... .++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--- 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK--- 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH---
Confidence 356788899999999999999999976532 6778999999999999999999999999876421 111 23
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCC
Q 046956 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHGH 412 (574)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 412 (574)
++..++..+...|++++|.+.|+++.+ ++ ...+...|+
T Consensus 81 ---------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~ 120 (258)
T 3uq3_A 81 ---------------------------------SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRN 120 (258)
T ss_dssp ---------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhH
Confidence 444555555555666666555555442 33 234556677
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
+++|...++++... .|+. ..+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+
T Consensus 121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888873 4544 47788888888999999999999998873 3456788888999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHH
Q 046956 492 NSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE------PQNAGSYVLLSNI 543 (574)
Q Consensus 492 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 543 (574)
+++ ...| +...+..+...+...|++++|...+++++++. |++..++..+..+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 887 3334 46778888899999999999999999999998 8888777777654
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=4.7e-15 Score=136.58 Aligned_cols=246 Identities=11% Similarity=-0.045 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD--EFILVSLMSAC 340 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~ 340 (574)
.+......+...|++++|+..|++..+ .+...+..+..++...|++++|+..+++..+.+..++ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666666666666666665432 2344566666666666666666666666655321111 22344455555
Q ss_pred hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
...|++++|...++.+.+..+.... ++..++..|...|++++|.+.|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~------------------------------ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLD--MYGQIGSYFYNKGNFPLAIQYME------------------------------ 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTH--HHHHHHHHHHHTTCHHHHHHHHG------------------------------
T ss_pred HHcccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHccCHHHHHHHHH------------------------------
Confidence 5555555555555555544333221 34444444444455554444444
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhC--
Q 046956 421 DRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH---LKSAYELLNSM-- 494 (574)
Q Consensus 421 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-- 494 (574)
+..+. .|+ ...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...++++
T Consensus 133 -~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 133 -KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp -GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred -HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44432 222 223333331222223555555555555442 22223444444444444444 44444444433
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 495 --PVEPH------ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 495 --~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
...|+ ...+..+...+...|++++|+..++++++++|+++.+...+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2456667788889999999999999999999999999888877765544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=6.2e-15 Score=135.94 Aligned_cols=241 Identities=10% Similarity=-0.052 Sum_probs=179.3
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH
Q 046956 307 QNGQPDEAVKIFSDMCSKNVQ---PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (574)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+... ..+..++..|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCHH
Confidence 346677777777777765321 1345666677777777777777777777777654322 26778888888888888
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 384 RAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 384 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+|.+.|+++.+ .+...|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887762 35678888999999999999999999999884 56655444555556777999999999988887
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-----ASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
. .+++...+. ++..+...++.++|.+.++++ ...|+ ...+..+...+...|++++|+..++++++.+|++.
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3 344444444 777788888899999999887 33332 46777888999999999999999999999999876
Q ss_pred hhHHHHHHHHHhcCCchHHHHHH
Q 046956 535 GSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 554 55778889999988776
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=9.6e-17 Score=163.72 Aligned_cols=132 Identities=11% Similarity=0.169 Sum_probs=115.9
Q ss_pred CCCchhHHHHHHHHHHhcCCChHHHHHHhhcc-------CCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc
Q 046956 65 LEQDHSLVAHFISLCHSLATPLSYSTAVFNRI-------VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137 (574)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 137 (574)
...-..+||++| ..|+++|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 123 ~~~~~~TynaLI-dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFF-KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344566899999 9999999999999999765 37999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccC
Q 046956 138 TFPLVIKACSHVLSV-REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197 (574)
Q Consensus 138 ~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (574)
||+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+.+-++.+.++..++
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999999985 789999999999999999999999998777655444444443333
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.5e-13 Score=126.42 Aligned_cols=224 Identities=10% Similarity=-0.026 Sum_probs=131.1
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666666777777777777777666522 33344444444444 555555555555544432
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH- 444 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~- 444 (574)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 34445555555555 566666666666665543 44555555555655
Q ss_pred ---cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 046956 445 ---VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----Y 513 (574)
Q Consensus 445 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 513 (574)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 66666666666666653 2 34455555556655 66666666666655212244555556666666 6
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 564 (574)
+++++|+..++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677777777777666644 5566667777766 677777777776666554
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1.8e-14 Score=142.45 Aligned_cols=343 Identities=12% Similarity=0.008 Sum_probs=143.9
Q ss_pred HHHHHHcCCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCCh---HHHHHHHhhcCCCCcchHHHHHHHHHccC-----
Q 046956 177 LIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDL---VEAKTVFDLMPERSNVSWNALIGGLVKIG----- 247 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 247 (574)
+...+.+.|++++|..+|++..+ .+..++..|...|...|+. ++|+++|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 45556667777777777776654 3444555555556666666 67777777666555555555555444433
Q ss_pred ChHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHH---HHHHhhCCC-CCHhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 248 DLRSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSA---RSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 248 ~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
+.++|...++... ..+...+..|...|...+..+++ .+.+..... .+...+..+...|...+.++++......+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 4556666665221 22333555555555554433222 222222111 234455555555555554443333322221
Q ss_pred HCCCCCCHHHHHHHHHHHhccC---CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc----CCHHHHHHHHhhCCCC
Q 046956 323 SKNVQPDEFILVSLMSACSQVG---NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC----GNMDRAAELFETMPNR 395 (574)
Q Consensus 323 ~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 395 (574)
+.-...+...+..+...|...| +.++|...+....+.+..... .+..+..+|... +++++|.++|++....
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~--~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g 246 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ--RVDSVARVLGDATLGTPDEKTAQALLEKIAPG 246 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH--HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCC
Confidence 1111111124444444555555 555555555555554433222 223444444333 4555555555554422
Q ss_pred ChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHhhcCCCCc
Q 046956 396 DVVSYCSMIKG-L--SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----LVEDGWRFFEAMQNVYAIVPS 467 (574)
Q Consensus 396 ~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~ 467 (574)
+...+..+... + ...+++++|+.+|++..+.| +...+..|...|. .| ++++|..+|++.. +-+
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~ 317 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GRE 317 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTC
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCC
Confidence 33444444444 2 23455555555555555443 3334444444443 23 5555555555443 123
Q ss_pred HHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 046956 468 PEHYACMVDLLGR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELE 530 (574)
Q Consensus 468 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 530 (574)
+..+..|...|.. ..++++|.+.|++.-...+......+...|.. ..|.++|...++++.+..
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444433 22555555555554111222233333333332 234555555555555443
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=8.2e-14 Score=124.00 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=142.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.|+++. ..+...|..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 56666777777777777777777655 2345677777777788888888888888877742 3345577777777888
Q ss_pred c-CcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 046956 445 V-GLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 445 ~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
. |++++|...++++.+. +..|+ ...+..++.++...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 8 8888888888887762 23333 566777778888888888888888776 3233 4666777777888888888888
Q ss_pred HHHHHHHhhCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 521 LVANRLFELEP-QNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 521 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888888888 778888888888888888888888888776544
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=5.2e-14 Score=127.89 Aligned_cols=195 Identities=9% Similarity=-0.043 Sum_probs=119.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.|+++. ..+...+..+...|...|++++|...++++.+.. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 44555555555556555555555543 1244556666666666666666666666666532 2234466666666666
Q ss_pred cCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
.|++++|..+++++... +..| +...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666541 2333 3455666666666666777666666665 2222 35556666666666777777777
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777677666667777777777777777777776666544
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=4.6e-14 Score=135.08 Aligned_cols=246 Identities=9% Similarity=0.032 Sum_probs=174.2
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-cchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN-LDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
..+|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+++.++.... ++..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~--a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--VWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH--HHHHHH
Confidence 3455556666666666666666666666542 2245556666666666664 66666666666665544332 566777
Q ss_pred HHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcH
Q 046956 374 DMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSH-VGLV 448 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~ 448 (574)
.++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 777777777777777777652 45677888888888888888899888888884 45 45588888888877 5554
Q ss_pred HHH-----HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 046956 449 EDG-----WRFFEAMQNVYAIVPSPEHYACMVDLLGRTG--HLKSAYELLNSMPVEPH-ASAWGALLGACKLYS------ 514 (574)
Q Consensus 449 ~~a-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~------ 514 (574)
++| +..+++++. -.+-+...|..+..++...| ++++|++.++++...|+ ...+..+...|...|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 666 477888876 33445678888888888888 68888888887754554 556777777777763
Q ss_pred --C-HHHHHHHHHHH-HhhCCCCchhHHHHHHHHHhc
Q 046956 515 --D-IELGELVANRL-FELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 515 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 547 (574)
+ +++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999999888776543
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=5.5e-14 Score=120.90 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=142.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++.+.|++++|...+..+.. ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 5667888899999999999999999998884 454 45888888999999999999999999887 344456778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 475 VDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
...+...++++.|.+.++++ ...| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88899999999999998887 3344 567788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 046956 553 VCLVRSKMKERGL 565 (574)
Q Consensus 553 a~~~~~~~~~~~~ 565 (574)
|.+.+++..+.+.
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999987653
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=2.5e-14 Score=141.50 Aligned_cols=343 Identities=12% Similarity=0.035 Sum_probs=235.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC-CcchHHHHHHHHHccCCh---HHHHHHHhcCCCCchhHHHHHHHHHHhcC----
Q 046956 207 AMIVGYASVGDLVEAKTVFDLMPER-SNVSWNALIGGLVKIGDL---RSARQLFDEMPERNVVSYTTMIDGYAKVG---- 278 (574)
Q Consensus 207 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g---- 278 (574)
.+...+.+.|++++|+++|++..++ +...+..+...+...|+. ++|...|+...+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 3567778899999999999988654 555666677777778887 89999998665557777888888666655
Q ss_pred -ChHHHHHHHhhCCCC-CHhHHHHHHHHHHhCCCch---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHH
Q 046956 279 -DMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPD---EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353 (574)
Q Consensus 279 -~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 353 (574)
++++|++.|++..++ +..++..|...|...+..+ ++.+.+....+.|. ......+...|...+.++.+....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence 788999999876653 4567888888888776544 45555555555443 345556667777777666555544
Q ss_pred HHHHHhCCCCChhhHHHHHHHHhHhcC---CHHHHHHHHhhCCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHH
Q 046956 354 SYLSRSHMDLSRAHVIAALVDMNAKCG---NMDRAAELFETMPN---RDVVSYCSMIKGLSIH----GHGRQAVSLFDRM 423 (574)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m 423 (574)
..+.+.....+.. .+..+..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+.+|++.
T Consensus 165 ~~~~~~a~~~~~~-a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDI-CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTT-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 4443332333333 7888999999999 99999999988763 3444556777777654 6899999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC-----CHHHHHHHHHhCC
Q 046956 424 LSEGLTPDEVAFTIVLTA-C--SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG-----HLKSAYELLNSMP 495 (574)
Q Consensus 424 ~~~g~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 495 (574)
. .| +...+..+... + ...+++++|..+|++..+. | +...+..+...|. .| ++++|.+.|++.-
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 7 33 44556666655 3 5689999999999999874 4 6677788888887 55 9999999999998
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 046956 496 VEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 496 ~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (574)
..+......+...|.. ..++++|...|+++.+ +.++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6677778788777765 3499999999999877 4567889999999875 5589999999999988875
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.4e-13 Score=123.46 Aligned_cols=171 Identities=15% Similarity=0.040 Sum_probs=127.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 443 (574)
.+..++..|...|++++|.+.++++. ..+...+..+...|...|++++|..+++++.+.+..|+. ..+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 45555555666666666666665544 234566777777788888888888888887763344543 47777888888
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|.+
T Consensus 153 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 889999999999888873 3445778888888999999999999998887 3344 46667777788899999999999
Q ss_pred HHHHHHhhCCCCchhHHHH
Q 046956 522 VANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l 540 (574)
.++++++..|+++.....+
T Consensus 231 ~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHH
Confidence 9999999999988765543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.9e-14 Score=129.96 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=96.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 344444555555555555555554432 234455555555555566666666655555532 2233455555555555
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..
T Consensus 104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666555542 2334455555555556666666666655554 2222 344455555555566666666666
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666666666666666666666666666666655543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.9e-14 Score=129.92 Aligned_cols=178 Identities=11% Similarity=0.134 Sum_probs=136.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 45555556666666666666665544 2355677778888888888999999988888753 3456678888888999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999998873 4456778888999999999999999999887 3333 567788888999999999999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
++++++.+|+++.++..++.+....|
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999888876654443
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=6.9e-14 Score=136.91 Aligned_cols=295 Identities=14% Similarity=0.077 Sum_probs=180.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C----HhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-C
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--R-D----VVAWSALISGYAQNGQPDEAVKIFSDMCSK----NVQP-D 329 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~ 329 (574)
.....+......+...|++++|...|++..+ + + ..+|..+...+...|++++|...+++..+. +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445666777788888888888888876543 2 2 346777788888888888888888876442 2122 2
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhCC----CCChhhHHHHHHHHhHhcCC--------------------HHHH
Q 046956 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM----DLSRAHVIAALVDMNAKCGN--------------------MDRA 385 (574)
Q Consensus 330 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A 385 (574)
..++..+...+...|++++|...+..+.+... ......++..++..|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566666677777888888777776654321 11222356667777777777 7777
Q ss_pred HHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHH
Q 046956 386 AELFETMPN-----R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPD----EVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 386 ~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~a 451 (574)
.+.+++..+ . ...++..+...|...|++++|...+++..+.. -.++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 766665431 1 12356666677777777777777777665421 0111 12566666667777777777
Q ss_pred HHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHH
Q 046956 452 WRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH----ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a 519 (574)
...++++.....-.++ ..++..++..|...|++++|.+.++++ +..++ ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777766542111111 345666677777777777777776665 11111 33455555667777777777
Q ss_pred HHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCchHHHHH
Q 046956 520 ELVANRLFELEPQNA------GSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
...+++++++.+... .++..++.++...|+.......
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 777777777776662 3556666666666666554433
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.1e-14 Score=142.92 Aligned_cols=261 Identities=13% Similarity=0.024 Sum_probs=165.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSLMSACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAAL 372 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 372 (574)
+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...++.+.+. +..+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344445555555555555555443211 11 23444444555555555555555444332 1122222356666
Q ss_pred HHHhHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC
Q 046956 373 VDMNAKCGNMDRAAELFETMPN---------RDVVSYCSMIKGLSIHGH-----------------GRQAVSLFDRMLSE 426 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~ 426 (574)
+..|...|++++|...+++..+ ....++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6667777777777766665542 123366677777777777 77787777776542
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-C-
Q 046956 427 ----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-P- 495 (574)
Q Consensus 427 ----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 495 (574)
+-.+. ..++..+...+...|++++|...++++.+...-.++ ...+..++.+|...|++++|.+.++++ .
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11222 236777788888889999988888887753111112 236778888888999999998888776 1
Q ss_pred --CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 496 --VEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 496 --~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
...+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 4566677788889999999999999988874332 44788899999999999999999988764
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=155.78 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=110.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP-------NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 440 (574)
+|++++++|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 79999999999999999999997653 58999999999999999999999999999999999999999999999
Q ss_pred HHhccCc-HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 046956 441 ACSHVGL-VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492 (574)
Q Consensus 441 ~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (574)
++++.|+ .++|.++|++|.+. |+.||..+|+.++....+.+-++...++..
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 9999998 57899999999998 999999999999877777655544444433
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=7.7e-14 Score=128.36 Aligned_cols=224 Identities=10% Similarity=-0.004 Sum_probs=166.9
Q ss_pred HHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHc
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD----VVSYCSMIKGLSIH 410 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~ 410 (574)
...+...|+++.|...++.+.+..+.... .+..++..|...|++++|.+.++++.+ ++ ...|..+...+...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPY--IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCST--THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 33444455555555555555444332222 455666677777777777777766543 22 23478888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
|++++|+..+++..+.. +.+..++..+...+...|++++|...++++.+ ..+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 33456899999999999999999999999986 3445577788888444455699999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----chhHHHHHHHHHhcCCchHHHHHH
Q 046956 491 LNSM-PVEPH-ASAWGALLGACKLYSD---IELGELVANRLFELE---PQN-----AGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 491 ~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
|+++ ...|+ ...+..+...+...|+ +++|+..++++++.. |+. ..++..++.+|...|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988 44454 6677777788888888 888999999999874 442 258889999999999999999999
Q ss_pred HHHHhCCC
Q 046956 558 SKMKERGL 565 (574)
Q Consensus 558 ~~~~~~~~ 565 (574)
+++.+..+
T Consensus 245 ~~al~~~p 252 (272)
T 3u4t_A 245 KNILALDP 252 (272)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCc
Confidence 99987654
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=5.9e-13 Score=122.48 Aligned_cols=230 Identities=13% Similarity=-0.009 Sum_probs=166.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CHhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQ----NGQPDEAVKIFSDMCSKNVQPDEFILVS 335 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 335 (574)
+.++.++..+...|...|++++|+..|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 346778889999999999999999999877654 57788889999999 999999999999999876 5666666
Q ss_pred HHHHHhc----cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH--
Q 046956 336 LMSACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI-- 409 (574)
Q Consensus 336 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 409 (574)
+...+.. .++.++|...++...+.+ +...+..+...|..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCC
Confidence 7767766 677777777666665543 23344445555555
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh---
Q 046956 410 --HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH----VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR--- 480 (574)
Q Consensus 410 --~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 480 (574)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCC
Confidence 666777777777776644 44455566666665 77777777777777763 245666677777777
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCch
Q 046956 481 -TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 481 -~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.+++++|++.+++.-...+...+..+...+.. .+++++|+..++++++.+|+++.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 77888888877776212235566667777777 88888888888888888876443
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=3.5e-14 Score=135.90 Aligned_cols=228 Identities=10% Similarity=0.014 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC-HHHHHHHHhhCCC---CChhHHHHHHH
Q 046956 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN-MDRAAELFETMPN---RDVVSYCSMIK 405 (574)
Q Consensus 330 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~ 405 (574)
...|..+...+...|++++|...++.+++.++.... ++..++.++...|+ +++|+..|+++.+ .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~--a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH--HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456777777888999999999999999987765443 78999999999997 9999999999873 46789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh-cCC
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR-TGH 483 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~ 483 (574)
++...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++++ ..+-+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999994 55 456999999999999999999999999997 344567899999999999 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC------
Q 046956 484 LKSA-----YELLNSM-PVEP-HASAWGALLGACKLYS--DIELGELVANRLFELEPQNAGSYVLLSNIYATAD------ 548 (574)
Q Consensus 484 ~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 548 (574)
.++| ++.++++ ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..|+++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777776 4455 4678888888888888 689999999998 889999999999999999975
Q ss_pred ---CchHHHHHHHHH-HhCC
Q 046956 549 ---RWLDVCLVRSKM-KERG 564 (574)
Q Consensus 549 ---~~~~a~~~~~~~-~~~~ 564 (574)
.+++|.++++++ .+.+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 258999999998 6544
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1.1e-13 Score=131.37 Aligned_cols=263 Identities=16% Similarity=0.062 Sum_probs=175.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPD----EFILVSLMSACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAAL 372 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 372 (574)
....+...|++++|...|+++.+.... + ...+..+...+...|+++.|...+..+.+. +..+....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455555555555555555543211 1 234444555555555555555555544322 2222223356667
Q ss_pred HHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 046956 373 VDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGH--------------------GRQAVSLFDRM 423 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m 423 (574)
+..|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777766542 22 2367777778888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 424 LSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 424 ~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
... +..+. ..++..+...+...|++++|...++++.+...-.++ ...+..++..+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11222 236777888889999999999999888753111111 247788889999999999999998876
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 495 ----PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 495 ----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11122 4466677788999999999999999999875432 447889999999999999999999998
Q ss_pred HhCC
Q 046956 561 KERG 564 (574)
Q Consensus 561 ~~~~ 564 (574)
.+..
T Consensus 330 ~~~~ 333 (338)
T 3ro2_A 330 LEIS 333 (338)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7644
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.2e-13 Score=121.98 Aligned_cols=190 Identities=12% Similarity=0.015 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (574)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+..+.... .+..++.++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--a~~~lg~~~ 83 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG--GYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHH
Confidence 34444444444455555555554444331 223334444444444444444444444444443322211 344444444
Q ss_pred Hhc-----------CCHHHHHHHHhhCC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 377 AKC-----------GNMDRAAELFETMP--NR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 377 ~~~-----------g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
.+. |++++|...|++.. .| +...|..+...+...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 44444444444433 12 23444444555555555555555555555433 3444445555555
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
...|++++|...|+++.+ ..+.+...+..+..++...|++++|++.+++
T Consensus 162 ~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC-------------
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555544 2222344444555555555555555554444
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=5.1e-13 Score=118.81 Aligned_cols=171 Identities=12% Similarity=0.001 Sum_probs=129.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIH-GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 442 (574)
.+..++..+...|++++|.+.++++. ..+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 45555556666666666666665554 23456777778888888 888888888888887433444 35778888888
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP--HASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a 519 (574)
...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 8999999999999988873 3445778888899999999999999998887 3233 556666666778899999999
Q ss_pred HHHHHHHHhhCCCCchhHHHH
Q 046956 520 ELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l 540 (574)
..+++.+.+..|+++.....+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999988876554
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=142.32 Aligned_cols=260 Identities=13% Similarity=0.055 Sum_probs=139.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC---CCc----hhHHHHHHHHHHhcCChHHHHHHHhhCCC---------CCHhHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP---ERN----VVSYTTMIDGYAKVGDMTSARSLFEAAPD---------RDVVAW 298 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 298 (574)
.+......+...|++++|...++... +.+ ..++..+...|...|++++|...+++... ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34445556666666666666666221 122 23555666666666666666666554321 013355
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------cchHHHHH
Q 046956 299 SALISGYAQNGQPDEAVKIFSDMCSKNV-QPD----EFILVSLMSACSQVGN--------------------LDLSNWVD 353 (574)
Q Consensus 299 ~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 353 (574)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666666544210 011 2345555556666666 66666666
Q ss_pred HHHHHh----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHH
Q 046956 354 SYLSRS----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 354 ~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
....+. +..+.....+..++..|...|++++|...+++..+ ++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 554432 11222222455666666666666666666665542 11 125556666666666666666666
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 421 DRMLSEGL-TPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 421 ~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
++..+... .++ ..++..+...+...|++++|...++++.+...-..+ ..++..+..+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66554210 011 235555666666666666666666665542111111 345555666666666666666666
Q ss_pred HhC
Q 046956 492 NSM 494 (574)
Q Consensus 492 ~~~ 494 (574)
++.
T Consensus 331 ~~a 333 (406)
T 3sf4_A 331 EKH 333 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=3.6e-14 Score=141.24 Aligned_cols=188 Identities=10% Similarity=-0.024 Sum_probs=159.9
Q ss_pred HHHHHHHHhHhcCCH-HHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNM-DRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.+..++..+...|++ ++|++.|++.. . .+...|..+...|...|++++|...|++..+ ..|+...+..+...+.
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHHHHH
Confidence 666677777777777 77777777665 2 3467888888899999999999999999988 4677778888899999
Q ss_pred cc---------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC----CHH
Q 046956 444 HV---------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT--------GHLKSAYELLNSM-PVEP----HAS 501 (574)
Q Consensus 444 ~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p----~~~ 501 (574)
.. |++++|...++++.+. .+.+...|..+..+|... |++++|++.|+++ ...| +..
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 98 9999999999999873 445678899999999988 9999999999988 4455 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
.|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999999999999999999999999999999999999999999976543
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=9e-14 Score=128.08 Aligned_cols=220 Identities=12% Similarity=-0.061 Sum_probs=178.7
Q ss_pred hccCCcchHHHHHHHHHHhCC--CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 415 (574)
...|++++|...++.+.+... .+.....+..++..+...|++++|...|+++. ..+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345788999999999987643 22344588899999999999999999999876 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 046956 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM- 494 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (574)
|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 335678999999999999999999999999874 344444444555667789999999999766
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 495 PV-EPHASAWGALLGACKLYSDIELGELVANRLFELEPQ----NAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 495 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.. .++...+ .++..+...++.++|+..++++++..|. ++..+..++.+|...|++++|...++++.+.+.
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 22 2333333 4667778888999999999999887664 478899999999999999999999999987663
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=3.5e-11 Score=122.93 Aligned_cols=439 Identities=10% Similarity=0.063 Sum_probs=256.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCC---chHHHHHHHHhHhC
Q 046956 57 HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSR---FIEVFTIFVRLIRE 130 (574)
Q Consensus 57 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~ 130 (574)
++..+..+ +.|...|..++ ....+.+.++.+..+|+++. +.....|...+..-.+.|+ ++.+..+|++....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi-~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLL-KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444444 45777777777 77777777777777777774 4455567777777777777 77788888777765
Q ss_pred C-CCCCcchHHHHHHHHhccCCc--------HHHHHHHHHHHH-hCC-CCC-cchHHHHHHHHHc---------CCChHH
Q 046956 131 E-AVPDKYTFPLVIKACSHVLSV--------REGTAIHAAVIR-WGV-DED-VFVGTSLIDLYGK---------RKEISC 189 (574)
Q Consensus 131 ~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~ 189 (574)
. ..|+...|...+....+.++. +...++|+..+. .|. .++ ...|...+..... +++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 3 135666666666655444443 233456666554 254 443 2456555554332 223445
Q ss_pred HHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHh-------cCCC
Q 046956 190 ARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD-------EMPE 261 (574)
Q Consensus 190 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~ 261 (574)
+..+|++... |.. .+..+-..|.. ++.. . +..+...++.- ...+++.|...+. .+..
T Consensus 213 ~R~iy~raL~iP~~-~~~~~w~~Y~~---fe~~------~---~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 213 IRKLYKTLLCQPMD-CLESMWQRYTQ---WEQD------V---NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp HHHHHHHHTTSCCS-SHHHHHHHHHH---HHHH------H---CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHhCccH-HHHHHHHHHHH---HHHh------c---CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhh
Confidence 5556655543 111 01111111110 0000 0 00000000000 0011222222221 1100
Q ss_pred --Cch-hHHHHHHHHHHhcCChHHHHHHHhhCCC------CCHhHHHHHHHHHHhCC-------CchHHHHHHHHHHHCC
Q 046956 262 --RNV-VSYTTMIDGYAKVGDMTSARSLFEAAPD------RDVVAWSALISGYAQNG-------QPDEAVKIFSDMCSKN 325 (574)
Q Consensus 262 --~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~ 325 (574)
|.. ... .....+. .....|...+..--..+ ..+.+..+|++.+..
T Consensus 278 ~~p~~~~~~------------------~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~- 338 (679)
T 4e6h_A 278 NLPITLNQA------------------TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH- 338 (679)
T ss_dssp CCCSSSTTC------------------CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred ccccccccc------------------hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-
Confidence 000 000 0000000 00233444444332222 123455677777664
Q ss_pred CCCCHHHHHHHHHHHhccCCcchHH-HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----------
Q 046956 326 VQPDEFILVSLMSACSQVGNLDLSN-WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---------- 394 (574)
Q Consensus 326 ~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 394 (574)
.+-+...|...+.-+...|+.+.|. .+++......+. +.. ++...+....+.|++++|.++|+.+.+
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~-Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAV-LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3446677777777777778888886 888888765432 233 667778888888888888888887653
Q ss_pred ---CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHH
Q 046956 395 ---RD------------VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHV-GLVEDGWRFFEA 457 (574)
Q Consensus 395 ---~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 457 (574)
|+ ..+|...+....+.|+.+.|..+|.+..+. + .+....|...+....+. ++.+.|..+|+.
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 236888888888889999999999999885 2 22334444333333333 558999999999
Q ss_pred hHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP----HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 458 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..+. ++.+...+...++.....|+.+.|..+|+++ ...| ....|...+..-...|+.+.+..+.+++.+..|+
T Consensus 496 ~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 496 GLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9984 4556677788888888999999999999987 3333 2457888888888999999999999999999998
Q ss_pred Cchh
Q 046956 533 NAGS 536 (574)
Q Consensus 533 ~~~~ 536 (574)
++.+
T Consensus 574 ~~~~ 577 (679)
T 4e6h_A 574 VNKL 577 (679)
T ss_dssp CCHH
T ss_pred CcHH
Confidence 7643
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=2.5e-13 Score=131.75 Aligned_cols=223 Identities=10% Similarity=-0.021 Sum_probs=128.4
Q ss_pred HHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC-----hhHHHHHH
Q 046956 339 ACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RD-----VVSYCSMI 404 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 404 (574)
.+...|++++|...+..+.+. +..+....++..++..|...|++++|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344455555555555555432 11111223555666666666666666666555431 11 23566666
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CC-CCcHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AI-VPSPEHYACMV 475 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~ 475 (574)
..|...|++++|...+++..+. +-.+. ..++..+...|...|++++|...+++..+.. +. +....++..++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 7777777777777777766542 11111 1256666777777777777777777666510 12 22345666777
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-----CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 476 DLLGRTGHLKSAYELLNSM-P-----VEPH-ASAWGALLGACKLYSD---IELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
.+|.+.|++++|.+.+++. . ..|. ...+..+...+...|+ +++|+..+++. ...|.....+..++.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 7777777777777777665 1 0121 1223444566666777 56666666554 223444556777788888
Q ss_pred hcCCchHHHHHHHHHHh
Q 046956 546 TADRWLDVCLVRSKMKE 562 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~ 562 (574)
..|++++|...+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888887777654
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=3.3e-13 Score=139.50 Aligned_cols=162 Identities=16% Similarity=0.211 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
..+|+.+...|...|++++|+..|++.++ +.|+ ..++..+..+|.+.|++++|+..|+++.+. -+-+...|..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 46788888899999999999999999988 4565 458889999999999999999999999873 334578899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 476 DLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.+|...|++++|++.|+++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999887 5555 4678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 046956 554 CLVRSKMKE 562 (574)
Q Consensus 554 ~~~~~~~~~ 562 (574)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=3.4e-13 Score=132.29 Aligned_cols=266 Identities=15% Similarity=0.094 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--C-CH----hHHHHHHHHHHhCCCchHHHHHHHHHHHC----CC-CCCHHHHH
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPD--R-DV----VAWSALISGYAQNGQPDEAVKIFSDMCSK----NV-QPDEFILV 334 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~ 334 (574)
+..+...+...|++++|+..|++..+ + +. .+|..+...|...|++++|...+++..+. +. ......+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33455566666666666666665432 1 22 35666666666777777777766665432 11 11234555
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHHHHHhHhcCC-----------------HHHHHHHHhhCC
Q 046956 335 SLMSACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAALVDMNAKCGN-----------------MDRAAELFETMP 393 (574)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~ 393 (574)
.+...+...|++++|...+..+.+. +..+.....+..++..|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666667777777777766665543 2222333367777888888888 888887777654
Q ss_pred C-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 394 N-----R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 394 ~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 234778888889999999999999998776310 012 1377888888999999999999999887
Q ss_pred hhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 460 NVYAIVP----SPEHYACMVDLLGRTGHLKSAYELLNSM-PV---EPH----ASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 460 ~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
....-.. ...++..++.+|...|++++|.+.++++ .. .++ ..++..+...+...|++++|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6411111 1467788899999999999999999876 11 112 3466677788999999999999999999
Q ss_pred hhCCC
Q 046956 528 ELEPQ 532 (574)
Q Consensus 528 ~~~p~ 532 (574)
++.+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 98654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.8e-12 Score=111.36 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=140.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
+|..++..|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|...+.+..... +.+...+..+...+..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHH
Confidence 788899999999999999999988762 466788999999999999999999999988843 3345577788888999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.++++.+...+.++.. ..+.+...+..++.+|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..
T Consensus 86 ~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 44556788889999999999999999999987 4455 577888899999999999999999
Q ss_pred HHHHHhhCCCCch
Q 046956 523 ANRLFELEPQNAG 535 (574)
Q Consensus 523 ~~~~~~~~p~~~~ 535 (574)
++++++++|+++.
T Consensus 164 ~~~al~~~p~~a~ 176 (184)
T 3vtx_A 164 FKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHhCCccCHH
Confidence 9999999998643
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=1.4e-12 Score=112.05 Aligned_cols=160 Identities=14% Similarity=-0.009 Sum_probs=92.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 33344444444444444444443321 122334444444455555555555555555442 222344455555555555
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 482 GHLKSAYELLNSM-PV-EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
|++++|.+.++++ .. ..+...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554 11 224455666667777777788888888888777787777888888888888888888888877
Q ss_pred HHhCC
Q 046956 560 MKERG 564 (574)
Q Consensus 560 ~~~~~ 564 (574)
+.+..
T Consensus 170 ~~~~~ 174 (186)
T 3as5_A 170 ANELD 174 (186)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 76544
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=5.7e-13 Score=126.53 Aligned_cols=264 Identities=15% Similarity=0.101 Sum_probs=168.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--C-C----HhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 046956 269 TMIDGYAKVGDMTSARSLFEAAPD--R-D----VVAWSALISGYAQNGQPDEAVKIFSDMCSK----NVQP-DEFILVSL 336 (574)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l 336 (574)
.....+...|++++|...|++..+ + + ...+..+...+...|++++|...+++..+. +..| ...++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455556666666666554432 1 2 234555666666666666666666554332 1111 13345555
Q ss_pred HHHHhccCCcchHHHHHHHHHHhCC----CCChhhHHHHHHHHhHhcCC--------------------HHHHHHHHhhC
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRSHM----DLSRAHVIAALVDMNAKCGN--------------------MDRAAELFETM 392 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 392 (574)
...+...|++++|...+....+... ......++..++..|...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5566666666666666665543211 11112256667777777777 77777777665
Q ss_pred CC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 393 PN-----R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 393 ~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
.+ . ....+..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 41 1 1346777888888999999999999887652 11111 236778888899999999999999888
Q ss_pred HhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 459 QNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-P---VEPH----ASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 459 ~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
.....-..+ ..++..++..+...|++++|.+.++++ . ...+ ..++..+...+...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 753111111 466778889999999999999998876 1 1112 346667778899999999999999999
Q ss_pred HhhCCC
Q 046956 527 FELEPQ 532 (574)
Q Consensus 527 ~~~~p~ 532 (574)
+++.+.
T Consensus 330 ~~~~~~ 335 (338)
T 3ro2_A 330 LEISRE 335 (338)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 988654
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=2.4e-10 Score=116.78 Aligned_cols=215 Identities=6% Similarity=0.001 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHH-HHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA-ELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
+..+|+.++...+... .++...+..+...|+.++|. ++|++... .+...|-..+...-..|++++|..+|++++
T Consensus 328 v~~~Ye~aL~~~p~~~--~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAP--EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567777776644422 27888888888999999996 99988763 355677888888889999999999999988
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC-
Q 046956 425 SEG---------LTPD------------EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG- 482 (574)
Q Consensus 425 ~~g---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 482 (574)
... -.|+ ...|...+....+.|..+.|..+|.++.+. ........|...+..-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCC
Confidence 631 0142 236777888888889999999999999873 12223455555554444554
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCchHHHHHH
Q 046956 483 HLKSAYELLNSM-P-VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ---NAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 483 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
+.+.|.++|+.. . ...+...|...+......|+.+.|..+|++++...|+ ....|......-...|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 589999999887 2 2235666778888888899999999999999998873 4567888888888999999999999
Q ss_pred HHHHhCCCc
Q 046956 558 SKMKERGLR 566 (574)
Q Consensus 558 ~~~~~~~~~ 566 (574)
+++.+..+.
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 999887654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=2.6e-11 Score=113.52 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCc-------chHHHHHHHHHHh-CCCCChhhHHHHHHHHh
Q 046956 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACS-------QVGNL-------DLSNWVDSYLSRS-HMDLSRAHVIAALVDMN 376 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 376 (574)
++|..+|++..... +-+...|..++..+. ..|+. ++|..++++.++. .+. ...++..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Confidence 56666777766542 334555555555543 24665 6777777777763 332 222677777778
Q ss_pred HhcCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHH
Q 046956 377 AKCGNMDRAAELFETMPN--R-DVV-SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-HVGLVEDG 451 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a 451 (574)
.+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888877663 3 233 78888888888888888888888888753 233445544333322 36888888
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEP--HASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++..+...|+.+.|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888873 3445777888888888888888888888877 2 244 356777777888888888888888888
Q ss_pred HHhhCCCCchh
Q 046956 526 LFELEPQNAGS 536 (574)
Q Consensus 526 ~~~~~p~~~~~ 536 (574)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 88888876543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=5.6e-12 Score=122.27 Aligned_cols=230 Identities=8% Similarity=0.015 Sum_probs=170.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC-----CChhhHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSK----NVQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD-----LSRAHVIA 370 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 370 (574)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455567777888888877777653 1111 2356666777777788888887777776653221 22233678
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFT 436 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 436 (574)
.++..|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999998887662 22 247888999999999999999999998762 33244 45888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcC---CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYA---IVPSPEHYACMVDLLGRTGH---LKSAYELLNSMPVEPH-ASAWGALLGA 509 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 509 (574)
.+...+.+.|++++|...+++..+... .+.....+..+...+...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999998876421 12223346678889999999 9999999999865444 3456667799
Q ss_pred HHhcCCHHHHHHHHHHHHhhC
Q 046956 510 CKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~ 530 (574)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=125.98 Aligned_cols=54 Identities=7% Similarity=-0.106 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+...+.+.++...++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455556666667776666777777777777777777777777777776654
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=4.4e-12 Score=122.69 Aligned_cols=223 Identities=9% Similarity=-0.026 Sum_probs=140.7
Q ss_pred HHhccCCcchHHHHHHHHHHhC----CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC-----hhHHHHHH
Q 046956 339 ACSQVGNLDLSNWVDSYLSRSH----MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RD-----VVSYCSMI 404 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 404 (574)
.+...|++++|...+..+.+.. ..+....++..++..|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3455666666666666655431 1122233566677777777777777766665441 11 34567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCcHHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVPSPEHYACMVD 476 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~ 476 (574)
..|...|++++|...+++..+. +-.+. ..++..+..+|...|++++|...+++..... +.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888776652 11111 2366777777888888888888888776511 22223566777888
Q ss_pred HHhhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 477 LLGRTGHLKSAYELLNSM----PV--EPHA-SAWGALLGACKLYSD---IELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
++.+.|++++|.+.+++. .. .|.. ..+..+...+...++ +.+|+..+++ ....|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHH
Confidence 888888888888888765 11 2222 233444455666777 6666666665 12234445567788888888
Q ss_pred cCCchHHHHHHHHHHh
Q 046956 547 ADRWLDVCLVRSKMKE 562 (574)
Q Consensus 547 ~g~~~~a~~~~~~~~~ 562 (574)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887754
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=127.90 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=173.4
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHh------C
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSK-------NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS------H 360 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 360 (574)
+..++..+...+...|++++|...++++.+. ........+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999998873 22334567888888999999999999999998865 3
Q ss_pred CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 046956 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--- 426 (574)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 426 (574)
..+.....+..++..|...|++++|.+.++++.+ + ....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455888999999999999999999987652 1 2356888889999999999999999998874
Q ss_pred ---CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhc------CCCCc-------HHHHHHHHHHHhhcCCHHHHHH
Q 046956 427 ---GLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVY------AIVPS-------PEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 427 ---g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
+..|.. .++..+...+...|++++|...++++.+.. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 223433 478888999999999999999999998631 01111 1222233334445556666666
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 490 LLNSMP-VEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 490 ~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.++... ..| ...++..+...|...|++++|...+++++++.|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 666663 334 3556778889999999999999999999998775
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=2e-11 Score=114.33 Aligned_cols=214 Identities=8% Similarity=0.047 Sum_probs=171.7
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhH-------hcCCH-------HHHHHHHhhCCC---C-ChhHHHHHHHHHH
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNA-------KCGNM-------DRAAELFETMPN---R-DVVSYCSMIKGLS 408 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~ 408 (574)
+.|...|+.+++..+.... ++..++..+. +.|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~--~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD--IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5677788888876543332 6777777765 35886 899999998653 3 4568999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh-hcCCHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPD-EV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG-RTGHLK 485 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~ 485 (574)
..|++++|..+|+++++ +.|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998 4565 33 7899999999999999999999999973 3445566654444432 379999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 486 SAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFEL---EPQ-NAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 486 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
+|.++|+++ ...| +...|..++..+...|++++|+.+|+++++. .|+ ...++..++..+...|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 3334 5778888889999999999999999999996 443 677899999999999999999999999
Q ss_pred HHhCCCc
Q 046956 560 MKERGLR 566 (574)
Q Consensus 560 ~~~~~~~ 566 (574)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9876653
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=1.3e-11 Score=109.99 Aligned_cols=205 Identities=9% Similarity=0.034 Sum_probs=148.2
Q ss_pred CCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHH
Q 046956 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMI 404 (574)
Q Consensus 328 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 404 (574)
.|...+......+...|++++|...+..+.+.....+.. .+..++..+...|++++|.+.|++..+ | +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV-TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH-HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 355777778888888899999999998888877634444 566688888888999999888887762 3 456788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc---HHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPD-E-------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS---PEHYAC 473 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 473 (574)
..|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|+++.+ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8888888999999888888874 343 3 3466777778888888888888888875 2443 567777
Q ss_pred HHHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 474 MVDLLGRTGHL--KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 474 l~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
+..+|...|+. +++..+. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 77777666543 2222211 12233333322 334566899999999999999999998888876643
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.4e-10 Score=111.96 Aligned_cols=53 Identities=17% Similarity=0.025 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCC----CCCH----hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 270 MIDGYAKVGDMTSARSLFEAAP----DRDV----VAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
....+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455566666665554421 1111 134444455555566666666555544
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=8.2e-12 Score=111.33 Aligned_cols=187 Identities=12% Similarity=-0.017 Sum_probs=94.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~ 442 (574)
.+...+..+...|++++|.+.|++.. . ++...+..+..++...|++++|+..+++..+ ..|+. ..+..+..++
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 45555555555555555555555543 1 3444444455555555555555555555555 23333 2555555555
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSP-------EHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---ASAWGALLGACK 511 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~ 511 (574)
...|++++|...++++.+. .+.+. ..|..+...+...|++++|++.|+++ ...|+ ...+..+...+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555542 12222 33444455555555555555555544 33343 223333333332
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
. .+...++++..+.+.++..+..+ .....|.+++|...+++..+..+
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 2 22333444444444443333222 23334445999999999887654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=3.5e-11 Score=103.11 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=144.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 677888899999999999999999874 467788999999999999999999999998853 3456688889999999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...++++.+ ..+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987 34556788899999999999999999999987 3333 567888888999999999999999
Q ss_pred HHHHHhhCCCCchh
Q 046956 523 ANRLFELEPQNAGS 536 (574)
Q Consensus 523 ~~~~~~~~p~~~~~ 536 (574)
++++++..|+++..
T Consensus 167 ~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 167 FKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHCCCGG
T ss_pred HHHHHHcCCCchhh
Confidence 99999998887654
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=7.4e-12 Score=124.54 Aligned_cols=179 Identities=10% Similarity=0.044 Sum_probs=156.0
Q ss_pred HHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 382 MDRAAELFETMP---NRDVVSYCSMIKGLSIHGHG-RQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 382 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
++++...++... ..+...|..+...+...|++ ++|+..|++.++. .|+ ...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 34678899999999999999 9999999999985 455 6699999999999999999999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 046956 457 AMQNVYAIVPSPEHYACMVDLLGRT---------GHLKSAYELLNSM-PVEP-HASAWGALLGACKLY--------SDIE 517 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~ 517 (574)
++.+ ..|+...+..+..+|... |++++|++.++++ ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9995 357788999999999999 9999999999988 4445 577888888999888 9999
Q ss_pred HHHHHHHHHHhhCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 518 LGELVANRLFELEP---QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 518 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+|+..++++++++| +++.++..++.+|...|++++|.+.+++..+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987553
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.6e-10 Score=109.19 Aligned_cols=229 Identities=8% Similarity=0.019 Sum_probs=165.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC-----CCChhhHH
Q 046956 300 ALISGYAQNGQPDEAVKIFSDMCSKNV-QP----DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-----DLSRAHVI 369 (574)
Q Consensus 300 ~li~~~~~~~~~~~A~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~ 369 (574)
.....+...|++++|+..|++..+... .+ ...++..+...+...|+++.|...+....+... .+....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456677777777777777654311 11 234566666677777777777777776654321 11223367
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLS-----EGLTPDEVAF 435 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 435 (574)
..++..|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 7888888889999988888877652 22 24678888999999999999999999876 32 2235588
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCC---CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAI---VPSPEHYACMVDLLGRTGH---LKSAYELLNSMPVEPHA-SAWGALLG 508 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 508 (574)
..+...+.+.|++++|...+++..+...- +.....+..+...+...|+ +++|+..+++....|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88999999999999999999998875222 2223556677778888888 99999999987544443 35556778
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 046956 509 ACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.|...|++++|...++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998875
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1.7e-11 Score=126.78 Aligned_cols=166 Identities=11% Similarity=0.186 Sum_probs=138.4
Q ss_pred CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 046956 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTI 437 (574)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ 437 (574)
.|+....++.++..|.+.|++++|++.|++.. . .+..+|+.+..+|.+.|++++|+..|++.++ +.|+ ...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 34445578888999999999999999998876 2 3567889999999999999999999999988 4565 458899
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 515 (574)
+..++...|++++|++.|+++.+. -+-+...|..++.+|...|++++|++.|+++ ...|+ ...+..+...+...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 999999999999999999999873 3345788999999999999999999999887 55564 6678888899999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 046956 516 IELGELVANRLFELEP 531 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p 531 (574)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999888644
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=9.4e-11 Score=108.66 Aligned_cols=173 Identities=8% Similarity=-0.054 Sum_probs=104.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIH-GHGRQAVSLFDRMLSEGLTPD------ 431 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~------ 431 (574)
++..++.+|.+.|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 445555555555555555555544431 11 23566777777775 8888888888877652 221
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH---
Q 046956 432 -EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-----EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS--- 501 (574)
Q Consensus 432 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 501 (574)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..++.++...|++++|...+++. ...|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356777778888888888888888877641111111 24666777788888888888888776 4444321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 502 ---AWGALLGACK--LYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 502 ---~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.+..++.++. ..+++++|+..|+++.+++|.+...+..+-.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 2333444443 3466788888887777777765554444433
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=7.9e-11 Score=108.57 Aligned_cols=223 Identities=11% Similarity=0.049 Sum_probs=155.7
Q ss_pred hccCCcchHHHHHHHHHHh-----C-CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----------C-ChhHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRS-----H-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----------R-DVVSYCSM 403 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 403 (574)
...|+++.|...+++..+. + ..+....++..++..|...|++++|...++++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4678899999888887753 1 2234444788899999999999999999887652 1 23578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc-----C-CCCcHHH
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSE------GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY-----A-IVPSPEH 470 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~ 470 (574)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 11233 3478888889999999999999999887631 1 2223567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSMP----------VEPH-ASAWGALLGACKLYSD------IELGELVANRLFELEPQN 533 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 533 (574)
+..++.+|...|++++|.+.++++. ..+. ...+..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999987761 1222 2233333333333222 333333333333334666
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+.++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999988753
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=4.4e-09 Score=95.31 Aligned_cols=243 Identities=11% Similarity=0.024 Sum_probs=139.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHH
Q 046956 272 DGYAKVGDMTSARSLFEAAPDRD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
+-..-.|++..++.-...+...+ ...-.-+.++|...|++... ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 34455688888877666554322 22333355777777777642 12234433433333333 222 45
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
..++.....+ .++.. .+..++.++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~-~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPY-ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTTTS-CCCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555444 22233 445677777777777777777776632 2345666677777777777777777777776
Q ss_pred CCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 426 EGLTP-----DEVAFTIVLTA--CSHVG--LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 426 ~g~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
..| +..+...++.+ ....| ++.+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+ .
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355 24455555555 22233 677777777777642 333222233333677777777777777654 1
Q ss_pred C----------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 496 V----------EPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 496 ~----------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
. .|+ +.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 243 3444455545555565 67777777777777776554
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=1.2e-11 Score=101.88 Aligned_cols=142 Identities=8% Similarity=-0.036 Sum_probs=102.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 482 (574)
...+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|+++.+. .+-+...|..++.+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3344455677777777777654 23433 25566777777888888888888877762 3445677777888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 483 HLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV-ANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 483 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
++++|+..|+++ ...| +...+..+...+...|++++|.+. ++++++++|+++.++...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 4455 466777788888888888766554 689999999999999999988888875
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=3.2e-10 Score=100.61 Aligned_cols=183 Identities=12% Similarity=0.003 Sum_probs=119.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE----VAFTI 437 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 437 (574)
.+..++..+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++++. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 455566777777888888888777652 32 245666777777788888888888877763 3332 13444
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 046956 438 VLTACSH------------------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499 (574)
Q Consensus 438 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 499 (574)
+..++.. .|++++|...|+++.+. .+-+...+........-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 4444443 34566666666666542 222222222111100000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 569 (574)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++++...+.....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 00112445778899999999999999999999986 57999999999999999999999999988765544
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=1.2e-09 Score=105.43 Aligned_cols=86 Identities=10% Similarity=-0.017 Sum_probs=52.5
Q ss_pred HHHHHHHccCChHHHHHHHhc---CCC-Cch----hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----HhHHHH
Q 046956 238 ALIGGLVKIGDLRSARQLFDE---MPE-RNV----VSYTTMIDGYAKVGDMTSARSLFEAAPD-----RD----VVAWSA 300 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~---~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 300 (574)
.....+...|++++|...++. ..+ .+. .++..+...+...|++++|.+.+++... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344456667888888777662 112 121 1455666777778888888877766542 11 123455
Q ss_pred HHHHHHhCCCchHHHHHHHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
+...+...|++++|...+++..+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66667777777777777776654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=2.5e-10 Score=104.00 Aligned_cols=183 Identities=13% Similarity=0.025 Sum_probs=124.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--R-D---VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD-EVAFTIVL 439 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~l~ 439 (574)
.+..++..+.+.|++++|...|+.+.+ | + ...+..+..+|...|++++|+..|++.++... .|. ...+..+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 566667777777777777777777653 3 2 45667777777788888888888888777421 112 23566666
Q ss_pred HHHhc--------cCcHHHHHHHHHHhHhhcCCCCcHHHH-----------------HHHHHHHhhcCCHHHHHHHHHhC
Q 046956 440 TACSH--------VGLVEDGWRFFEAMQNVYAIVPSPEHY-----------------ACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 440 ~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
.++.. .|++++|...|+++.+. .+.+.... ..++..|.+.|++++|+..|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67766 78888888888887764 22222222 55678888999999999988877
Q ss_pred -CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCchH
Q 046956 495 -PVEPH----ASAWGALLGACKLY----------SDIELGELVANRLFELEPQNAG---SYVLLSNIYATADRWLD 552 (574)
Q Consensus 495 -~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 552 (574)
...|+ ...+..+..++... |++++|+..++++++..|+++. +...+..++...|++++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 22333 34566666777655 8889999999999999999864 44555655555555444
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=8.2e-11 Score=109.09 Aligned_cols=191 Identities=11% Similarity=0.014 Sum_probs=139.2
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 046956 372 LVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL---TPD--EVAFTI 437 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ 437 (574)
.+..|...|++++|.+.|.+..+ .+ ..+|+.+..+|...|++++|+..+++.++... .+. ..++..
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35567788999999888876652 11 45889999999999999999999999876310 111 247888
Q ss_pred HHHHHhcc-CcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHH
Q 046956 438 VLTACSHV-GLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---A-----SAW 503 (574)
Q Consensus 438 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~ 503 (574)
+...|... |++++|+..|++..+...-..+ ..++..++..+.+.|++++|++.|+++ ...|+ . ..+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 89999996 9999999999998864211111 356888999999999999999999987 22222 1 156
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----HHHHHHHHH--hcCCchHHHHHHHHHHh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGS-----YVLLSNIYA--TADRWLDVCLVRSKMKE 562 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~~~~ 562 (574)
..+..++...|++++|+..++++++++|+.... +..++..+. ..+++++|...|+++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 677788899999999999999999999986553 445566554 45678888888866543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=5.4e-10 Score=89.81 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=81.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVE-PHASAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 512 (574)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.+.++++ ... .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555442 2223444555555555556666665555554 112 234556666677777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7888888888888888888878888888888888888888888888776544
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=9.8e-10 Score=100.03 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=139.0
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-H
Q 046956 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-P 468 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 468 (574)
..+...+..+...+...|++++|+..|+++++. .|+ ...+..+..++.+.|++++|...|+++.+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 346677888888999999999999999999985 344 458888999999999999999999999985322222 4
Q ss_pred HHHHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHH
Q 046956 469 EHYACMVDLLGR--------TGHLKSAYELLNSM-PVEPHA-SAW-----------------GALLGACKLYSDIELGEL 521 (574)
Q Consensus 469 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~ 521 (574)
..+..++.++.. .|++++|++.|+++ ...|+. ... ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 677788889988 99999999999987 223321 222 455688999999999999
Q ss_pred HHHHHHhhCCCC---chhHHHHHHHHHhc----------CCchHHHHHHHHHHhCCC
Q 046956 522 VANRLFELEPQN---AGSYVLLSNIYATA----------DRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 522 ~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 565 (574)
.++++++..|++ +.++..++.+|... |++++|...++++.+..+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 999999999985 45889999999977 899999999999987653
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=7.9e-10 Score=101.79 Aligned_cols=199 Identities=9% Similarity=0.018 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHh------CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------C--
Q 046956 331 FILVSLMSACSQVGNLDLSNWVDSYLSRS------HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------R-- 395 (574)
Q Consensus 331 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 395 (574)
.++..+...+...|++++|...+..+.+. +..+....++..++..|...|++++|.+.++++.+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555544433 22233333566666666666776666666665541 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc----
Q 046956 396 --DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE------GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---- 462 (574)
Q Consensus 396 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 462 (574)
...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777778888888888888888887763 11333 3477888888999999999999998887531
Q ss_pred --CCCC-cHHHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 463 --AIVP-SPEHYACMVDLLGRT------GHLKSAYELLNSMP-VEPH-ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 463 --~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
...+ ....+..+...+... ..+.++...++... ..|+ ...+..+...+...|++++|...++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1112 223344344333332 33455555555553 2233 446677779999999999999999999875
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1.4e-10 Score=120.71 Aligned_cols=168 Identities=8% Similarity=-0.048 Sum_probs=100.0
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 046956 377 AKCGNMDRAAELFETMP-----------NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSH 444 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 444 (574)
...|++++|++.+++.. ..+...+..+...+...|++++|+..|+++.+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45566666666665543 223455666666666666666666666666653 33 33466666666666
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...|+++.+. .+.+...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666652 23345566666666666666666 6666655 3333 345556666666666666666666
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
|+++++++|++..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655443
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=8.1e-11 Score=96.79 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=104.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 515 (574)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|+++ ...| +...|..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 45567788999999999998875 22223456678999999999999999999988 5555 57788888999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH-HHHHHhCCC
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV-RSKMKERGL 565 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~ 565 (574)
+++|+..|+++++++|+++.++..++.+|...|++++|.+. +++..+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 577776543
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.3e-09 Score=100.47 Aligned_cols=173 Identities=9% Similarity=-0.057 Sum_probs=137.9
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 463 (574)
....+......+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 334444444445566777888888999999999999999884 554 568888999999999999999999988753
Q ss_pred CCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHH
Q 046956 464 IVPSPEHYA-CMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN--AGSYV 538 (574)
Q Consensus 464 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 538 (574)
.|+..... .....+...|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 44543332 3334467778888888888877 4445 56778888899999999999999999999999998 88999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 046956 539 LLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.|+.++...|+.++|...+++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999887653
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=5.3e-09 Score=91.58 Aligned_cols=162 Identities=10% Similarity=-0.036 Sum_probs=132.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhHhhcCCCCcHHH
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG----LVEDGWRFFEAMQNVYAIVPSPEH 470 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 470 (574)
.++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|..+|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466777788888888899999999999988865 55677777777777 6 899999999998763 35677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 471 YACMVDLLGR----TGHLKSAYELLNSM-PVEPH---ASAWGALLGACKL----YSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 471 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
+..|...|.. .+++++|++.|++. ...|. ...+..+...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7888888877 88999999999888 33443 6778888888887 78999999999999988 77788999
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 046956 539 LLSNIYATA-D-----RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 539 ~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 565 (574)
.|+.+|... | ++++|..++++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999999888764
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=2.6e-09 Score=85.70 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56677788888888999999888888753 335567778888888889999999999988863 344567788888889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999988877 2233 56677788888999999999999999999988863
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=1.2e-08 Score=92.42 Aligned_cols=240 Identities=9% Similarity=0.017 Sum_probs=151.4
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCH
Q 046956 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382 (574)
Q Consensus 303 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 382 (574)
+-..-.|++..++.-...+. .........-..+++...|+.+.. ....+... .+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~-a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGK-VLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHH-HHHHHHH-HHTTT--
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHH-HHHHHHH-Hhccc--
Confidence 44556678887777333321 122233334455677767766531 11111111 2333333 33322
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 383 DRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 383 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666676655 24555566777888888888888888888776543223 347777888888888888888888888
Q ss_pred HhhcCCCC-----cHHHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 459 QNVYAIVP-----SPEHYACMVDL--LGRTG--HLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 459 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
.+. .| +..+...++.+ ....| ++++|..+|+++ ...|+......++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 45 24455555555 33334 888888888888 3345533333444477888888888888887776
Q ss_pred h----------CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 529 L----------EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 529 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 5 47788888787777777786 77888888877553
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=1.5e-09 Score=111.09 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=121.6
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 046956 379 CGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
.|++++|.+.|++..+ .+...|..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988874 35678889999999999999999999999884 454 56888899999999999999999
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 046956 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLY---SDIELGELVANRLFEL 529 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 529 (574)
++++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 3445788889999999999999999999887 3344 466778888888888 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 046956 530 EPQNAGSYVLLS 541 (574)
Q Consensus 530 ~p~~~~~~~~l~ 541 (574)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.9e-09 Score=85.39 Aligned_cols=114 Identities=8% Similarity=0.040 Sum_probs=81.2
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 046956 428 LTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWG 504 (574)
Q Consensus 428 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 504 (574)
+.|+.. .+......+.+.|++++|+..|+++++ ..+.+...|..++.+|.+.|++++|++.++++ ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 445443 666677777777777777777777775 33445667777777777777777777777766 3334 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+..++...|++++|+..|+++++++|+++.++..|+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777778888888888888888888888888777777654
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=3.6e-09 Score=92.38 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=99.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 480 (574)
.+..+|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+++.+. .+.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3888999999999999999999984 554 568899999999999999999999999973 44567888889888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 481 TGH--LKSAYELLNSMPVEPHA--SAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 481 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
.|. .+.+...++... .|++ ..+.....++...|++++|+..|+++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 455666776663 3333 344455667778899999999999999999973
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=1.4e-09 Score=92.32 Aligned_cols=156 Identities=8% Similarity=-0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-Hh
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL-LG 479 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 479 (574)
.....+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++... .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 3344445555555555555554442 232 335555555555556666666555555432 1232222221111 11
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCchHHHH
Q 046956 480 RTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN--AGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
..+...+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112222355556555 3345 46777788888999999999999999999999875 5689999999999999999999
Q ss_pred HHHHHHh
Q 046956 556 VRSKMKE 562 (574)
Q Consensus 556 ~~~~~~~ 562 (574)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.1e-09 Score=113.93 Aligned_cols=152 Identities=9% Similarity=-0.024 Sum_probs=134.0
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 408 SIHGHGRQAVSLFDRML--------SEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...|+++.+ ..+.+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHH
Confidence 67899999999999998 4 344 456888899999999999999999999997 3445678999999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
...|++++|++.|+++ ...| +...+..+..++...|++++ +..|+++++++|+++.++..++.+|...|++++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988 4455 46678888899999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 046956 557 RSKMKERG 564 (574)
Q Consensus 557 ~~~~~~~~ 564 (574)
++++.+.+
T Consensus 557 ~~~al~l~ 564 (681)
T 2pzi_A 557 LDEVPPTS 564 (681)
T ss_dssp HHTSCTTS
T ss_pred HHhhcccC
Confidence 98776544
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=1.8e-09 Score=88.20 Aligned_cols=97 Identities=6% Similarity=-0.052 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..+...+.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 466777788888888888888888887 4445 56778888888999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 046956 546 TADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~ 564 (574)
..|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999888755
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=7.1e-09 Score=105.99 Aligned_cols=150 Identities=16% Similarity=0.039 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.++++.+ ..+.+...+..++.+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555555542 232 34555555555555666666666655554 222334555555555555666666655
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc---CCchHHHHHHHHHHhCC
Q 046956 490 LLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA---DRWLDVCLVRSKMKERG 564 (574)
Q Consensus 490 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 564 (574)
.++++ ...| +...+..+...+...|++++|++.++++++.+|+++.++..++.++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 55554 2222 3445555555555556666666666666555555555555566555555 55555555555555443
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=6.3e-09 Score=90.86 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=118.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhHhhcC
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTI----------------VLTACSHVGLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~ 463 (574)
......+...|++++|+..|++.++ ..|+. ..+.. +..++.+.|++++|...|+++.+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3344556677777777777777776 34543 35555 888999999999999999999973
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCchhHHH
Q 046956 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD--IELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 464 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
.+.+...+..++.++...|++++|++.|+++ ...| +...+..+...+...|+ .+.+...++++....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 4456789999999999999999999999988 4556 46678888777765543 44556666665433322 235667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 540 LSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
++..+...|++++|...|++..+..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 78889999999999999999987654
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=1.1e-07 Score=87.23 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHHHhCCCCChhhHHHHHHHHh----HhcCCHHH
Q 046956 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG--NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN----AKCGNMDR 384 (574)
Q Consensus 311 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~ 384 (574)
.++|+.+++.++..+ +-+...|+.-...+...| +++++...++.+...+++.... ++.-...+ ...+
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a--W~~R~~iL~~~~~~l~---- 121 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI--WNYRQLIIGQIMELNN---- 121 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH--HHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH--HHHHHHHHHHHHHhcc----
Confidence 356777777666542 223334444444555555 5666666666666555444432 32222222 2220
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHhhc
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE--DGWRFFEAMQNVY 462 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~ 462 (574)
..+++++++.+++++.+.. +-+..+|..-...+.+.|.++ ++++.++++.+.
T Consensus 122 ------------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~- 175 (306)
T 3dra_A 122 ------------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT- 175 (306)
T ss_dssp ------------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred ------------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-
Confidence 0034444444554444421 223334443333334444444 444444444442
Q ss_pred CCCCcHHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhC---
Q 046956 463 AIVPSPEHYACMVDLLGRTGH------LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDI-ELGELVANRLFELE--- 530 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--- 530 (574)
.+-|-..|+.-..++.+.|. ++++++.++++ ...| |...|+.+...+.+.|+. +....+.+++++++
T Consensus 176 -d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 176 -DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp -CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred -CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 22233444443333333333 44455444443 2222 344454444444444442 22333444444443
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
|.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=8.5e-09 Score=95.05 Aligned_cols=135 Identities=10% Similarity=-0.050 Sum_probs=115.6
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 046956 430 PD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALL 507 (574)
Q Consensus 430 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 507 (574)
|+ ...+..+...+...|++++|...|+++.+ ..+.+...+..++.++.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 44 45777888889999999999999999997 34456788999999999999999999999998 4567765444433
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 508 -GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 508 -~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
..+...++.+.|+..++++++.+|+++.++..|+.+|...|++++|...++++.+....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 44677888899999999999999999999999999999999999999999999886643
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=7.5e-09 Score=96.56 Aligned_cols=218 Identities=12% Similarity=0.023 Sum_probs=151.2
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHH
Q 046956 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ-VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 385 (574)
..|++++|.+++++..+... .. +.. .++++.|...+. ..+..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~----------------~a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYA----------------KAAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHH----------------HHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHH----------------HHHHHHHHcCCHHHH
Confidence 35678889998888765311 10 111 355666555444 345567778888888
Q ss_pred HHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHH
Q 046956 386 AELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD--EVAFTIVLTACSHVGLVED 450 (574)
Q Consensus 386 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~ 450 (574)
.+.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++. | .+. ..++..+...|.. |++++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHH
Confidence 888776552 11 347888888999999999999999987652 2 222 2477888888888 99999
Q ss_pred HHHHHHHhHhhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHH
Q 046956 451 GWRFFEAMQNVYAIVP----SPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEPH----ASAWGALLGACKLYSDIEL 518 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~ 518 (574)
|+..|++......-.. ...++..+..+|.+.|++++|++.|+++ . ..++ ...+..+...+...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998876421111 1467888999999999999999999887 1 1122 2245555667778899999
Q ss_pred HHHHHHHHHhhCCCCchh-----HHHHHHHHHhcCCchHHHH
Q 046956 519 GELVANRLFELEPQNAGS-----YVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 519 a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 555 (574)
|+..+++++ +.|..... ...++..+ ..|+.+.+..
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999 98875532 44555554 5677666555
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.96 E-value=2.6e-09 Score=87.38 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+...|++++|...|+++.. ..+.+...|..+..+|...|++++|++.|+++ ...| +...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444444445555555555555555544 22223444444555555555555555555444 2222 2334444444455
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 512 LYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..|++++|+..+++++++.|+++..
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 5555555555555555555544443
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=2.4e-08 Score=87.53 Aligned_cols=131 Identities=9% Similarity=-0.097 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++.+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556677788888888888888776 3567778888888888888888888888888863 34456778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-----------------HASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
|...|++++|.+.|+++ ...| ....+..+..++...|++++|+..++++++..|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888888888776 2222 125667777888888888888888888888888763
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=8.1e-09 Score=81.72 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=91.3
Q ss_pred CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 464 IVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 464 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
+.|+ ...+...+..|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 467888899999999999999999987 4455 577888889999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 541 SNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.+|...|++++|.+.|++..+.++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999987553
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=1.9e-08 Score=89.07 Aligned_cols=186 Identities=11% Similarity=-0.020 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC-hhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CCh----hHHH
Q 046956 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPN--RDV----VSYC 401 (574)
Q Consensus 329 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 401 (574)
+...+..+...+...|++++|...++.+.+..+... ....+..++.+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788999999999999999998765433 223788899999999999999999999863 332 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 046956 402 SMIKGLSI------------------HGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVY 462 (574)
Q Consensus 402 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 462 (574)
.+..++.. .|++++|+..|+++++. .|+.. ........ ..+.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 56666654 57899999999999984 55543 33221110 00111111
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.....++..|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|++++|+..++++....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678889999999999999987 334442 45777779999999999999999999988888764
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=9.8e-09 Score=86.95 Aligned_cols=157 Identities=12% Similarity=-0.003 Sum_probs=115.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA-CS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~ 443 (574)
....++..+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 455677788888999999999998884 45678888888899999999999999887764 3444333222211 11
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a 519 (574)
..+...+|...++++.+ ..+.+...+..+..++...|++++|.+.|+++ ...|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223346788888876 33445788888999999999999999999887 55554 45778888889999999999
Q ss_pred HHHHHHHHh
Q 046956 520 ELVANRLFE 528 (574)
Q Consensus 520 ~~~~~~~~~ 528 (574)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=2.9e-08 Score=82.98 Aligned_cols=126 Identities=6% Similarity=-0.019 Sum_probs=94.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|.+.+++. ...| +...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677777777777777777652 3345667777777777788888887777766 2233 4667777788888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCchHHHHHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNI--YATADRWLDVCLVRSKMK 561 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 561 (574)
..|++++|+..++++++..|.++..+..+..+ +...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999988887554444 788899999999887664
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=3.5e-07 Score=84.60 Aligned_cols=161 Identities=11% Similarity=-0.053 Sum_probs=120.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHH
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEV----AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYA 472 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 472 (574)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999888742 122211 2334666677788999999999998873112222 33688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhH
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMP-------VE-PH-ASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSY 537 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 537 (574)
.++.+|...|++++|.+.++++- .. +. ..++..+...|...|++++|+..+++++++.+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887761 11 11 2367778899999999999999999999874332 6689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 046956 538 VLLSNIYATADR-WLDVCLVRSKMKE 562 (574)
Q Consensus 538 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 562 (574)
..++.+|...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999988763
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=7.1e-08 Score=84.46 Aligned_cols=130 Identities=11% Similarity=-0.009 Sum_probs=112.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
.+..++..+...|++++|.+.|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455678888999999999999999998899999999999999999999999999999853 3455689999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCc----------------HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 046956 448 VEDGWRFFEAMQNVYAIVPS----------------PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA 500 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 500 (574)
+++|...|+++.+. .+.+ ...+..++.+|...|++++|.+.|+++ ...|+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999873 2222 378889999999999999999999987 556654
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=6.7e-07 Score=88.73 Aligned_cols=367 Identities=10% Similarity=-0.013 Sum_probs=218.1
Q ss_pred hCC-CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC-hHHH
Q 046956 113 QNS-RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE-ISCA 190 (574)
Q Consensus 113 ~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 190 (574)
+.| +++.|..+|+.+... -|. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877664 222 8999999999998874 4688888888877766653 3445
Q ss_pred HHHHccCCC------CChhhHHHHHHHHH----hcCChHHHHHHHhhcCCCCcchHHHHHHHHHc---cCChHHHHHHHh
Q 046956 191 RKVFDEMPE------RNVVSWTAMIVGYA----SVGDLVEAKTVFDLMPERSNVSWNALIGGLVK---IGDLRSARQLFD 257 (574)
Q Consensus 191 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 257 (574)
..+|+.... .+...|...+.-+. ..|+.+.+.++|++...........+-..|.. ......+..+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555655431 35567777776543 24567888888888765222222222222211 111112222221
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CCHhHHHHHHHHHHhCCC-------chHHHHHHHHHHHCCC
Q 046956 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD----RDVVAWSALISGYAQNGQ-------PDEAVKIFSDMCSKNV 326 (574)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~~~ 326 (574)
+. .+.+..|..+++.+.. .+...|...+..-...+. .+.+..+|++++.. .
T Consensus 148 ~~-----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~ 209 (493)
T 2uy1_A 148 DT-----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-F 209 (493)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HH-----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-C
Confidence 11 0122222322222111 134456555544332211 24567788888775 3
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH-HHHHHhhCC------------
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR-AAELFETMP------------ 393 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------ 393 (574)
+.+...|...+.-+...|+.+.|..+++..... +.. .. ++.. |+...+.++ ...+.+...
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-~~-l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-MF-LSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-SH-HHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-HH-HHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 445777777777788888899999999998887 332 22 3322 222111111 111222111
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCcHHHHH
Q 046956 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHYA 472 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 472 (574)
......|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHH
Confidence 011245777777777788899999999998 32 12344455433332222 346999999999999853 33455667
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
..++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888889999999999999983 3567788888888889999999999998875
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=2.8e-08 Score=79.39 Aligned_cols=115 Identities=9% Similarity=0.037 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGAC 510 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 510 (574)
..+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|.+.++++ ...| +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566666667777777777777777665 23335566667777777777777777777665 2233 466777777888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
...|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999988887764
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=3.5e-08 Score=78.48 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGAC 510 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 510 (574)
..+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.+++. ...| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666677777778888888888877763 3345677777888888888888888888776 2333 466777788889
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988763
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=1.3e-07 Score=87.54 Aligned_cols=162 Identities=11% Similarity=-0.076 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcC--CCCc--H
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYA--IVPS--P 468 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 468 (574)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...++++..... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888999999888887774321 21 1234455567788899999999988875311 1111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------C
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSMP----VEPH-----ASAWGALLGACKLYSDIELGELVANRLFELEPQ------N 533 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 533 (574)
.+++.++..|...|++++|.+.++++- ..|+ ..++..+...|...|++++|+..+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578888999999999999999887761 1222 257778888999999999999999999887432 1
Q ss_pred chhHHHHHHHHHhcCCchHH-HHHHHHHH
Q 046956 534 AGSYVLLSNIYATADRWLDV-CLVRSKMK 561 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 561 (574)
..++..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56789999999999999999 77777664
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=5.4e-08 Score=76.61 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVE-PHASAWGALLGAC 510 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 510 (574)
..+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++++ ... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46666777777777888888877777763 3345667777777888888888888887776 222 3566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999988877654
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=2.5e-06 Score=78.20 Aligned_cols=234 Identities=8% Similarity=-0.004 Sum_probs=161.2
Q ss_pred HHHHhcCCh-HHHHHHHhhCCC---CCHhHHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHH----h
Q 046956 272 DGYAKVGDM-TSARSLFEAAPD---RDVVAWSALISGYAQNG--QPDEAVKIFSDMCSKNVQPDEFILVSLMSAC----S 341 (574)
Q Consensus 272 ~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~ 341 (574)
.+..+.|.+ ++|+++++.+.. .+..+|+.-...+...| ++++++..++.+...+.+ +..+|+.-...+ .
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 333445554 789999988764 35678998888888888 999999999999886422 344454433333 2
Q ss_pred cc---CCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChH--HH
Q 046956 342 QV---GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR--QA 416 (574)
Q Consensus 342 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a 416 (574)
.. ++++++..+++.+.+..+ .+..+|+.-.-.+...|.++ ++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~p---------------------------------kny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDP---------------------------------KNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCT---------------------------------TCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred hccccCCHHHHHHHHHHHHHhCC---------------------------------CCHHHHHHHHHHHHHhcccChHHH
Confidence 22 344444444444443322 34455666666666666666 88
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH-HHH
Q 046956 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGL------VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS-AYE 489 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 489 (574)
++.++++++.. .-|...|+.-...+...|. ++++++.+++++. ..+-|...|+.+...+.+.|+..+ +..
T Consensus 166 L~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 166 LSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 88888888854 3355566665555566665 8889999988887 445677888888888888887544 455
Q ss_pred HHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCchhHHHHHH
Q 046956 490 LLNSM-PV----EPHASAWGALLGACKLYSDIELGELVANRLFE-LEPQNAGSYVLLSN 542 (574)
Q Consensus 490 ~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 542 (574)
+.+++ .. ..+...+..+...+.+.|+.++|+++++.+.+ .+|.....|...+.
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 66665 21 23567788888888899999999999999987 69988887776554
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=9.9e-09 Score=87.03 Aligned_cols=128 Identities=5% Similarity=0.077 Sum_probs=82.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-HhhcCCH-
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL-LGRTGHL- 484 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 484 (574)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 344567777777777777642 334457777777777778888888877777763 23355666667766 6677776
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 485 -KSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 485 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 7777777766 3333 355666666777777777777777777777777765544
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=4.9e-09 Score=96.28 Aligned_cols=188 Identities=11% Similarity=-0.024 Sum_probs=126.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 443 (574)
.+..++..+.+.|++++|...|++.. . .+...|..+..+|...|++++|+..+++.++. .|+ ...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 56677777888888888888887765 2 36677888888888889999999988888874 444 457888888888
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
..|++++|...|+++.+. .|+. ..+...+....+.+....... ........+......+. .+ ..|++++|++.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHH
Confidence 899999999988887753 1211 111111111111111111111 12222223333333332 22 36889999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATA-DRWLDVCLVRSKMKER 563 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 563 (574)
++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999888888888877776 7789999999888764
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=1.7e-08 Score=94.11 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=147.7
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 422 (574)
.|++++|..++++..+..... . +...++++.|...|.. ....|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----~-------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----F-------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----S-------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----c-------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 466778888888776543210 0 1114778888877654 46678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC--CC--cHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 423 MLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI--VP--SPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 423 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
..+. |-.+. ..+|..+...|...|++++|+..|++..+.+.- .+ ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 21111 247888889999999999999999988764211 11 14678889999998 999999999988
Q ss_pred C-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 494 M-PV---EPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNA------GSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 494 ~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
. .. ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11 111 45677788999999999999999999999866543 3677888889999999999999999
Q ss_pred HH
Q 046956 560 MK 561 (574)
Q Consensus 560 ~~ 561 (574)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=1.8e-08 Score=81.79 Aligned_cols=101 Identities=9% Similarity=-0.065 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+.+.|++++|...|+++.. ..+.+...|..+..+|...|++++|++.|+++ ...| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 333444444555555555555555543 22223444444444555555555555554444 1222 2333344444444
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 512 LYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..|++++|+..+++++++.|+++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcch
Confidence 4555555555555555554444443
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=3.6e-08 Score=93.01 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...|..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467778888888888888888888877 3344 56778888899999999999999999999999999999999999999
Q ss_pred hcCCchHH-HHHHHHHH
Q 046956 546 TADRWLDV-CLVRSKMK 561 (574)
Q Consensus 546 ~~g~~~~a-~~~~~~~~ 561 (574)
..|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1.1e-08 Score=91.52 Aligned_cols=124 Identities=10% Similarity=-0.097 Sum_probs=62.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA----SAWGALLGACKLY 513 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 513 (574)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455555666666665555431 232224444444555566666666666544322222 2344444555556
Q ss_pred CCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 514 SDIELGELVANRLFELE--PQ-NAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|++++|+..|+++.... |. .+.+...++.++.+.|+.++|...|+++...+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666666666555322 33 33355555555666666666666666555443
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=1.7e-08 Score=82.55 Aligned_cols=108 Identities=6% Similarity=-0.049 Sum_probs=89.8
Q ss_pred HHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 454 FFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 454 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.++++.. ..| +...+..++..+...|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455543 333 4567778888999999999999999887 3444 67778888889999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|+++.++..++.+|...|++++|...+++..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999887654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=4.9e-08 Score=77.30 Aligned_cols=107 Identities=8% Similarity=-0.059 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+.+.|++++|...|++..+. .+.+...|..++.++.+.|++++|++.++++ ...| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444444555555555555555555542 2223444445555555555555555555444 2222 2334444444455
Q ss_pred hcCCHHHHHHHHHHHHhhC------CCCchhHHHHHH
Q 046956 512 LYSDIELGELVANRLFELE------PQNAGSYVLLSN 542 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 542 (574)
..|++++|+..++++++++ |+++.+...+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 5555555555555555554 444444444443
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=3.5e-07 Score=79.89 Aligned_cols=159 Identities=9% Similarity=-0.080 Sum_probs=115.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHG----HGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
.+..+...|...+++++|.++|++..+ .+...+..+...|.. + ++++|+.+|++..+.| +...+..|...|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y 95 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 566677777777777777777776653 456667777777766 5 7888888888887754 556677777777
Q ss_pred hc----cCcHHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 046956 443 SH----VGLVEDGWRFFEAMQNVYAIV-PSPEHYACMVDLLGR----TGHLKSAYELLNSM-PVEPHASAWGALLGACKL 512 (574)
Q Consensus 443 ~~----~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 512 (574)
.. .+++++|..+|++..+. +.. .++..+..|...|.. .+++++|++.|++. ....+...+..+...|..
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 76 78899999999888753 221 126777888888887 78899999999887 322455566667777654
Q ss_pred c-C-----CHHHHHHHHHHHHhhCC
Q 046956 513 Y-S-----DIELGELVANRLFELEP 531 (574)
Q Consensus 513 ~-~-----~~~~a~~~~~~~~~~~p 531 (574)
. | ++++|+..++++.+...
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 3 89999999999888753
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=6.9e-08 Score=74.34 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ--NAGSYVLLSNI 543 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 543 (574)
...+..++..+...|++++|...++++ ...| +...+..+...+...|++++|+..++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888776 2233 5667778888899999999999999999999999 99999999999
Q ss_pred HHhc-CCchHHHHHHHHHHhCCCc
Q 046956 544 YATA-DRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 544 ~~~~-g~~~~a~~~~~~~~~~~~~ 566 (574)
+... |++++|.+.+++..+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999876653
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.75 E-value=4.3e-08 Score=76.84 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
.+..++..+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888999999999999887 4455 5777888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 046956 548 DRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 548 g~~~~a~~~~~~~~~~~~ 565 (574)
|++++|...+++..+.+.
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887554
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=3.9e-08 Score=80.22 Aligned_cols=99 Identities=6% Similarity=-0.080 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+.+.|++++|...|+++.. ..+.+...|..+..+|...|++++|++.|+++ ...| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 555666666667777777777776665 23344566666777777777777777777666 3334 3556667777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCc
Q 046956 512 LYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
..|++++|+..|++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 78888888888888888777654
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=2.6e-06 Score=78.70 Aligned_cols=160 Identities=9% Similarity=-0.067 Sum_probs=121.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHH
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT-PD----EVAF 435 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~ 435 (574)
...+..+...|++++|.+.+++..+ ++ ...+..+...+...|++++|+..+++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3446778889999999999988653 11 113334666777788999999999999984322 22 2368
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhc----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVY----AIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH-ASA 502 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~ 502 (574)
+.+...|...|++++|..+++++.+.. +..+. ..++..++..|.+.|++++|.+.++++ ...+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 899999999999999999999988521 11122 357888999999999999999998876 11222 567
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 046956 503 WGALLGACKLYS-DIELGELVANRLFEL 529 (574)
Q Consensus 503 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 529 (574)
+..+..++...| ++++|+..+++++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888889999999 579999999999875
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=3.6e-07 Score=81.70 Aligned_cols=138 Identities=7% Similarity=-0.095 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc--HHHHHHHHHH
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS--PEHYACMVDL 477 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 477 (574)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344566677788888888888777663 354445555556788888888888888765541 1221 2366778888
Q ss_pred HhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 478 LGRTGHLKSAYELLNSMP---VEPH--ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+...|++++|++.|++.. ..|. ...+.....++.+.|+.++|...|+++...+|+ +.+...|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 888999999998888872 1143 335666678888999999999999999999998 777766644
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.71 E-value=1.3e-07 Score=81.75 Aligned_cols=168 Identities=8% Similarity=-0.025 Sum_probs=98.5
Q ss_pred hHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046956 376 NAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 452 (574)
....|+++++.+.++.... .....+..+...+...|++++|+..|++.++. .|+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------------
Confidence 3344555555555543321 12345555666666667777777777766663 2221100000
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+..-.. ......+..+..+|...|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0000000 001356777788888888888888888776 3334 56678888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHH-HHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVC-LVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~ 564 (574)
|+++.++..++.++...|+.+++. ..++.+...+
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888877 5566655443
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=9.4e-08 Score=79.72 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA 509 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 509 (574)
...+..+...+...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 457888888999999999999999999873 3446788999999999999999999999987 4445 47788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+...|++++|+..++++++++|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999987665543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=1.9e-07 Score=75.07 Aligned_cols=99 Identities=6% Similarity=-0.158 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA 509 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 509 (574)
...+..+...+...|++++|...|+++... .+.+...+..++.++...|++++|...++++ ...| +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345555555555555555555555555542 2223444555555555555555555555444 2222 23444444455
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC
Q 046956 510 CKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555444
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=3.1e-07 Score=71.27 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=65.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555555666666666666666542 2334555555666666666666666666554 2223 3455666666677
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777777666666554
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=1.3e-07 Score=79.98 Aligned_cols=123 Identities=9% Similarity=0.048 Sum_probs=92.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA-CKLYSDI-- 516 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~-- 516 (574)
+...|++++|...+++..+. .+.+...+..++..|...|++++|.+.|+++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45567888888888888763 3456678888888888888888888888877 3333 45666666677 6778887
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
++|+..++++++.+|+++.++..++.+|...|++++|...++++.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888876643
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=6.4e-08 Score=76.65 Aligned_cols=92 Identities=4% Similarity=-0.035 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHHH
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG-------SYVLLS 541 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 541 (574)
+..++..+.+.|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344445555555555555555444 2223 2344444555555555555555555555555444322 344455
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 046956 542 NIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++...|++++|.+.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=2.1e-07 Score=73.62 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..++..+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456777788888889999999888877 3344 56777888888888899999999999999999988888999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 046956 546 TADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~ 564 (574)
..|++++|...+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999998888877644
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.4e-07 Score=76.53 Aligned_cols=98 Identities=6% Similarity=-0.126 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
+...+..+...+.+.|++++|.+.|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3456667788888999999999999887 3344 5677778888889999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 046956 545 ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~ 564 (574)
...|++++|...+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998887644
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=7.4e-07 Score=82.36 Aligned_cols=162 Identities=8% Similarity=-0.066 Sum_probs=118.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDV------VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL---TPD--EV 433 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ 433 (574)
.+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888999999888875431 111 2344456667788899999999999886321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-----HHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CC-CH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-----PEHYACMVDLLGRTGHLKSAYELLNSM-PV------EP-HA 500 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 500 (574)
+++.+...|...|++++|...++++.+.....|+ ..++..++..|...|++++|.+.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732111122 257888999999999999999999876 11 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 046956 501 SAWGALLGACKLYSDIELG-ELVANRLFEL 529 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 529 (574)
.++..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888999999999999 7889988875
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=3.1e-07 Score=71.31 Aligned_cols=99 Identities=9% Similarity=0.054 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
....+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788899999999999999999987 3334 6777888889999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCC
Q 046956 545 ATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...|++++|...+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999987654
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.66 E-value=2.3e-07 Score=73.91 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678889999999999999999999987 4455 67788888899999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCC
Q 046956 543 IYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+|...|++++|...+++..+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999887553
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.5e-07 Score=74.48 Aligned_cols=112 Identities=12% Similarity=-0.039 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWG 504 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 504 (574)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345677777777788888888888887774 2344 566677777777778888887777765 3333 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
.+..++...|++++|+..++++++.+|+++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 66677777778888888888877777777777766666543
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=3.4e-07 Score=76.26 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
...|..+...+...|++++|+..|++.++.. +.+...|..+..++...|++++|+..++++.+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456666666666677777777776666632 223446666666666667777777777666652 2334566666666
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 046956 477 LLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~ 494 (574)
+|...|++++|.+.|+++
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666777777776666655
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=4.6e-07 Score=78.46 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=35.9
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHH
Q 046956 378 KCGNMDRAAE---LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVE 449 (574)
Q Consensus 378 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~ 449 (574)
..|++++|.+ .+.........++..+...+...|++++|...+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223344555555555555555555555554431 11111 123444444455555555
Q ss_pred HHHHHHHHhH
Q 046956 450 DGWRFFEAMQ 459 (574)
Q Consensus 450 ~a~~~~~~~~ 459 (574)
+|...+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=1.7e-07 Score=75.42 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFEL-------EPQNAGSY----VLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.|..+..++.+.|++++|+..+++++++ +|+++.+| +..+.++...|++++|...|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666677777777777777777777777 78777777 7777788888888888877777765
No 155
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=1.7e-05 Score=78.66 Aligned_cols=313 Identities=10% Similarity=-0.062 Sum_probs=174.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC--CCchhHHHHHHHHHHhcCC-hHHHHHHHhhCC------CCCHhHHHHHHHHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP--ERNVVSYTTMIDGYAKVGD-MTSARSLFEAAP------DRDVVAWSALISGY 305 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~li~~~ 305 (574)
.|...+..+-. |+++.+..+|+... .|+...|...+....+.++ .+....+|+... ..+...|...+..+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 45555554433 88999999998322 3788888888887777663 344555665433 23567787777665
Q ss_pred H----hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc--------------hHHHHHHHHHHhCCCCChhh
Q 046956 306 A----QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD--------------LSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 306 ~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------------~a~~~~~~~~~~~~~~~~~~ 367 (574)
. ..++.+.+..+|++.+.....--...|...... ....+.. .|..++..+...-...+..
T Consensus 96 ~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~- 173 (493)
T 2uy1_A 96 GKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK- 173 (493)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH-
T ss_pred HhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH-
Confidence 4 245678888999998874222122333333221 1111122 2233333333211111111
Q ss_pred HHHHHHHHhHhc--CC-----HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 046956 368 VIAALVDMNAKC--GN-----MDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFT 436 (574)
Q Consensus 368 ~~~~l~~~~~~~--g~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 436 (574)
.+...+..-... |- .+.+..+|+++.. .+...|...+.-+...|+.++|..++++.+.. |... .+.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~ 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH
Confidence 344444432221 11 3345667776652 35677888888888899999999999999986 5443 222
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc---C-----C---CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHH
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVY---A-----I---VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE-PHASAWG 504 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~-----~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~ 504 (574)
.... +...+.. ++.+.+.+ . . ......|...+....+.|..+.|.++|+++... .+...|.
T Consensus 251 ~y~~-~~e~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i 323 (493)
T 2uy1_A 251 YYGL-VMDEEAV------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFI 323 (493)
T ss_dssp HHHH-HTTCTHH------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHh-hcchhHH------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHH
Confidence 2111 1111111 22222110 0 0 011245666666666777888888888877211 2333443
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 505 ALLGACKL-YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 505 ~l~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
........ .++.+.|..+++.+++..|+++..+...++.....|+.+.|+.+|+++
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32222222 336888888888888887887777666777777777777777777765
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=3.7e-07 Score=71.70 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 3333 57778888899999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 046956 546 TADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~~ 565 (574)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987653
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=8.3e-07 Score=76.79 Aligned_cols=128 Identities=8% Similarity=0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC-C----H
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEP-H----A 500 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 500 (574)
++..+...+...|++++|...+++..... +..+ ....+..+...+...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44555555555555555555555444310 1111 2344445555555555555555555443 0 011 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCc----hhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELE--PQNA----GSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..+..+...+...|++++|+..++++++.. ..++ ..+..++.++...|++++|...+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223344445555555555555555555431 1111 123455555555555555555555443
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=8.4e-07 Score=73.84 Aligned_cols=129 Identities=7% Similarity=-0.072 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777778888888888888877742 334567777788888888888888888888763 34456777888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGA--LLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+...|++++|.+.++++ ...| +...+.. ....+...|++++|+..+++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888776 3333 3334433 334466778888888888876554
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.1e-06 Score=71.51 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
+...+..++..+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556666667777777777777777665 44555 445555666667777777777777777777777777777777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 046956 542 NIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777777777777666543
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=5.1e-06 Score=76.92 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.++.++..|+++|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 56777888999999999999999999988864
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=4.5e-07 Score=71.88 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 466 PSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999987 3334 577788888999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCC
Q 046956 544 YATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+...|++++|...+++..+.+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999887653
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=1.4e-05 Score=73.66 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHH---HhcCCchHHHHHHHHHHhCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIY---ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++++++.+++++++.|++...+..++... ...|..+++...+.++++-+
T Consensus 253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 355666666666666666655444443321 13455556666666665433
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=3e-07 Score=72.96 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=71.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP---EHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALL 507 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 507 (574)
..+...+...|++++|...|+++.+. .+.+. ..+..++.++...|++++|.+.++++ ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34555677778888888888877763 22223 46666777777778888887777766 22332 44566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
.++...|++++|+..++++++..|+++........+-
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777778888888888887777777776655554443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=6.3e-07 Score=71.94 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=77.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 466 PSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+...+..++..+...|++++|...|+++ ...| +...+..+...+...|++++|+..++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677778888888888888888888776 3334 466777777888888888888888888888888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 046956 544 YATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888776543
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=5.1e-07 Score=89.05 Aligned_cols=143 Identities=13% Similarity=0.024 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
...|..+...+.+.|++++|+..|++.++. .|+...+ . .+... +... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 345666667777777777777777776652 2221000 0 00000 0000 11456777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHH
Q 046956 477 LLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
+|.+.|++++|+..++++ ...| +...+..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777 3334 56778888889999999999999999999999999999999999999999888776
Q ss_pred H-HHHHHH
Q 046956 555 L-VRSKMK 561 (574)
Q Consensus 555 ~-~~~~~~ 561 (574)
+ .+++|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 445443
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.51 E-value=6.7e-05 Score=69.46 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=150.7
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc-C-CH
Q 046956 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC-G-NM 382 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 382 (574)
...+..++|++++++++..+ +-+...|+.--..+...| .++++..+++.+...+++... +++.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~--aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ--VWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH--HHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHhcCCCh
Confidence 33444556777777776653 223444555455555555 467777777777766554443 455555555555 5 77
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc----
Q 046956 383 DRAAELFETMPN---RDVVSYCSMIKGLSIHGHGR--------QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL---- 447 (574)
Q Consensus 383 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---- 447 (574)
++++++++.+.+ .|..+|+.-.-.+...|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 888888888774 35566766655555555555 8999999999853 3455677777777777665
Q ss_pred ---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------
Q 046956 448 ---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL--------------------KSAYELLNSM-PV------- 496 (574)
Q Consensus 448 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------- 496 (574)
++++++.+++++. ..+-|...|+.+...+.+.|+. .+..+....+ ..
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7889999988887 4455678888877777776653 3444444444 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCchhHHHHHH
Q 046956 497 EPHASAWGALLGACKLYSDIELGELVANRLF-ELEPQNAGSYVLLSN 542 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 542 (574)
.+....+..+...|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2466777888899999999999999999987 558876666655544
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=5.5e-07 Score=71.17 Aligned_cols=110 Identities=12% Similarity=0.009 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVD 476 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 476 (574)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|+..++++++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 4445555555555555555555555552 332 334555555555555555555555555432 110 0001101
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
..++..+..++...|++++|++.|+++++..|+ +.....
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 124555666777788888888888888877765 444333
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=1.7e-06 Score=68.41 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=59.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLLSNIY 544 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 544 (574)
.++..+...|++++|.+.|+++ ...|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777777665 222321 355555566677777777777777777777776 55677777777
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 046956 545 ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~ 564 (574)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777666543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=5.7e-07 Score=71.32 Aligned_cols=110 Identities=6% Similarity=-0.042 Sum_probs=65.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV----EPH----ASAWG 504 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 504 (574)
.+..+...+...|++++|...++++... .+.+...+..++..+...|++++|...++++ .. .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555555555555542 2334445555555555555555555555554 11 112 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
.+...+...|++++|...++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 667778888888888888888888877 46666666665543
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=3.5e-05 Score=71.03 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=149.6
Q ss_pred hCCCch-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------cchHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046956 307 QNGQPD-EAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGN----------LDLSNWVDSYLSRSHMDLSRAHVIAALVD 374 (574)
Q Consensus 307 ~~~~~~-~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (574)
+.|.++ +|+.+++.+... .|+ ...|+.--..+...+. ++++..+++.+...+++... +++.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~--aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH--HHHHHHH
Confidence 444444 567777776654 333 2333332222222222 45666777777766554443 5665566
Q ss_pred HhHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 046956 375 MNAKCG--NMDRAAELFETMPN---RDVVSYCSMIKGLSIHGH-GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV--- 445 (574)
Q Consensus 375 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 445 (574)
++.+.| .++++..+++.+.+ .|..+|+.-.-.+...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666666 47888888888773 566788877777777787 588999999998853 33445665555444433
Q ss_pred -----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 046956 446 -----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT-----------GHLKSAYELLNSM-PVEPHASA 502 (574)
Q Consensus 446 -----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 502 (574)
+.++++++.+..+.. -.+-|...|+.+-..+.+. +.++++++.++++ ...|+. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 457889999998886 4455677787666666555 4578888888887 556664 3
Q ss_pred HHHHHH-----HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 503 WGALLG-----ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 503 ~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
|..+.. .....|..++....+.++.+++|....-|..+..-+
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 332221 222467888999999999999999888888776554
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=4.4e-07 Score=89.89 Aligned_cols=119 Identities=6% Similarity=-0.030 Sum_probs=95.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 515 (574)
+...+.+.|++++|.+.++++.+. .+.+...|..++.+|.+.|++++|++.++++ ...| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888863 3445778888888888888898888888877 4445 46778888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCchHHHHHHH
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNI--YATADRWLDVCLVRS 558 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 558 (574)
+++|++.++++++++|+++.++..++.+ +...|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888999999999987
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=5.2e-07 Score=74.94 Aligned_cols=113 Identities=13% Similarity=-0.059 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcC----------------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYA----------------IVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
..+......+.+.|++++|+..|.+...... .+.+...|..+..+|.+.|++++|+..++++ .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4677778888899999999999998876300 1122356777777888888888888877776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhHHHHHHHHH
Q 046956 496 VEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNA-GSYVLLSNIYA 545 (574)
Q Consensus 496 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 545 (574)
..| +...|..+..++...|++++|+..++++++++|+++ .+...+..+..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344 456677777778888888888888888888888777 55555554443
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=1.7e-07 Score=80.90 Aligned_cols=97 Identities=8% Similarity=-0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-H----------------ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
...+..++..+...|++++|.+.|+++ ...| + ...+..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344556666777777777777777665 2111 1 267777888999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|+++.++..++.+|...|++++|...+++..+..
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999988654
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=3.2e-07 Score=86.50 Aligned_cols=152 Identities=9% Similarity=-0.085 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
...+..+...+...|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44567777778888888888888888877 3455432 233344444432221 136788899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHhcCCchHH
Q 046956 477 LLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI-YATADRWLDV 553 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a 553 (574)
+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..|..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 577888888999999999999999999999999999999999888 4456778888
Q ss_pred HHHHHHHHhCCCccC
Q 046956 554 CLVRSKMKERGLRKI 568 (574)
Q Consensus 554 ~~~~~~~~~~~~~~~ 568 (574)
...+++|.+......
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 889998877665433
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=1e-05 Score=81.56 Aligned_cols=170 Identities=7% Similarity=-0.038 Sum_probs=133.4
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 380 GNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGH----------GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 380 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
...++|.+.++.+.. | +..+|+.--..+...|+ +++++..++++.+.. +-+..+|..-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344566777777662 3 44567666666666666 899999999999853 334558888777888888
Q ss_pred --cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 046956 447 --LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG-HLKSAYELLNSM-PVEP-HASAWGALLGACKLY-------- 513 (574)
Q Consensus 447 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 513 (574)
+++++++.++++.+ ..+-+..+|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998 44557788888888888888 899999999888 5555 677888877766553
Q ss_pred ------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 514 ------SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 514 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
+.++++++.++++++++|++..+|..+.+++...|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=1e-06 Score=67.58 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP---HASAWGALLGA 509 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 509 (574)
.+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4555555666666666666666666652 2334556666666677777777777766665 2233 35566666677
Q ss_pred HHhc-CCHHHHHHHHHHHHhhCCCCc
Q 046956 510 CKLY-SDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 510 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 534 (574)
+... |++++|++.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888888777777654
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.44 E-value=8.4e-07 Score=73.67 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--------CC--------CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSE--------GL--------TPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~--------~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
.+......+.+.|++++|+..|.+.++. .. .|.. ..|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555555666666666666665542 00 1221 24555555556666666666666665542
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
.+.+...|..++.+|...|++++|...|++.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 2334455555666666666666666665554
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=2.1e-06 Score=80.83 Aligned_cols=128 Identities=8% Similarity=-0.062 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD----------------EVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
...|..+...|...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666677777777777776663 333 25677777777777777777777777776
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELG-ELVANRLFE 528 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 528 (574)
. .+.+...+..+..+|...|++++|++.|+++ ...| +...+..+...+...|++++| ...+++++.
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445667777777777777777777777776 3344 355666666777777777777 445666554
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=2.1e-07 Score=72.46 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=59.5
Q ss_pred ccCcHHHHHHHHHHhHhhcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYA--IVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 519 (574)
..|++++|+..|+++.+. + .+.+...+..++.+|...|++++|++.|+++ ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 356777777777777752 2 1233466667777777777777777777766 3334 355566666777777777777
Q ss_pred HHHHHHHHhhCCCCchhHH
Q 046956 520 ELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~ 538 (574)
+..++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 7777777777777766543
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=8.8e-07 Score=70.19 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN-------AGSYV 538 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 538 (574)
...+..++..+...|++++|...++++ ...| +...+..+...+...|++++|+..++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788899999999999999999987 3333 57778888899999999999999999999998776 88999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 539 LLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++.+|...|++++|...++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=1.7e-06 Score=82.52 Aligned_cols=138 Identities=7% Similarity=-0.060 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
..|..+...+.+.|++++|+..|++.++. .++.. .... .+.... ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHHH
Confidence 45666667777777777777777776651 11100 0000 111111 112245778889999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++..++..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5556 467788888999999999999999999999999999999999999999988887765
Q ss_pred H
Q 046956 556 V 556 (574)
Q Consensus 556 ~ 556 (574)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=1.3e-06 Score=68.37 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 512 (574)
+..+...+.+.|++++|...|+++.+ ..+.+...|..+..++...|++++|+..|+++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33445556666777777777777665 23335666666777777777777777777666 3344 35566667777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc
Q 046956 513 YSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777654
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.41 E-value=2.3e-06 Score=70.68 Aligned_cols=128 Identities=14% Similarity=0.029 Sum_probs=72.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH----ASA 502 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 502 (574)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444332100011 124444555555555555555555543 00111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEP------QNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+..+...+...|++++|+..++++++..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55556777778888888888888776522 1245677888888888999998888887764
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.1e-06 Score=81.54 Aligned_cols=162 Identities=7% Similarity=-0.087 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCC-cHHH
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVP-SPEH 470 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~ 470 (574)
+..++..|...|++++|.+.+.++... +..++. .+.+.+...+...|+++.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777776665431 011111 122333334455677777777766654321 1122 2355
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----ch
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-----P--VEPH-ASAWGALLGACKLYSDIELGELVANRLFELE---PQN----AG 535 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 535 (574)
+..++..|...|++++|.++++++ . .++. ...+...+..|...|++++|...+++++... ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777654 1 1222 3355556677777777777777777777652 222 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666677777777777777766554
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=2.1e-06 Score=78.66 Aligned_cols=113 Identities=5% Similarity=-0.188 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLG 508 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 508 (574)
+...+..+...+...|++++|...|+++.+. .+.+...|..++.+|.+.|++++|.+.++++ ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999999873 3446788889999999999999999999887 5555 4667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
++...|++++|+..++++++++|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655444444333
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=6.1e-07 Score=69.78 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 481 TGHLKSAYELLNSM-PV---EPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 481 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
.|++++|+..|+++ .. .|+ ...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777666 33 232 34555566667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 046956 556 VRSKMKER 563 (574)
Q Consensus 556 ~~~~~~~~ 563 (574)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766554
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=1.4e-06 Score=70.15 Aligned_cols=74 Identities=9% Similarity=0.000 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-PV-------EPH-ASAW----GALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.|..+..++.+.|++++|+..+++. .. +|+ ...| .....++...|++++|+..|++++++.|.+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666667666666666554 33 776 4567 788899999999999999999999999998887
Q ss_pred HHHHHHH
Q 046956 537 YVLLSNI 543 (574)
Q Consensus 537 ~~~l~~~ 543 (574)
...+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.5e-07 Score=70.24 Aligned_cols=94 Identities=7% Similarity=-0.016 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSYV 538 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 538 (574)
+...+..++..+...|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888877 3344 56778888899999999999999999999999998 88889
Q ss_pred HHHHHHHhcCCchHHHHHHHHH
Q 046956 539 LLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
.++.++...|++++|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=2.3e-06 Score=80.60 Aligned_cols=149 Identities=8% Similarity=0.001 Sum_probs=82.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
.+..++..+.+.|++++|...|++..+ |+... +...++.+++...+. ...|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 677889999999999999999998763 33221 122233333332221 13677888889999
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCCHHHHHHH
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS-AWGALLGA-CKLYSDIELGELV 522 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~-~~~~~~~~~a~~~ 522 (574)
|++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++ ...|+.. .+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999873 3456788899999999999999999999988 5566543 34444433 3455677888899
Q ss_pred HHHHHhhCCCCch
Q 046956 523 ANRLFELEPQNAG 535 (574)
Q Consensus 523 ~~~~~~~~p~~~~ 535 (574)
|++++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999887653
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.25 E-value=1.7e-06 Score=84.95 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM---------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFEL-----EPQN 533 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~ 533 (574)
.+++.|+.+|...|++++|..+++++ +..|+ ..+++.+...|..+|++++|+.++++++++ .|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444455555555555555444433 12333 335666667777777777777777777764 5555
Q ss_pred ch---hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 534 AG---SYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 534 ~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|. ....|..++...|++++|...+.++++..
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 44567777778888888888888877643
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.8e-05 Score=76.26 Aligned_cols=158 Identities=9% Similarity=-0.011 Sum_probs=117.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPD----------------EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 468 (574)
..+...|++++|++.|.++.+...... ...+..++..|...|++++|.+++..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888776421111 1246788899999999999999999887643322222
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------C
Q 046956 469 ----EHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFEL------E 530 (574)
Q Consensus 469 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 530 (574)
.+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556667789999999888765 22333 456777889999999999999999998875 2
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33356889999999999999999999988764
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=7.6e-06 Score=80.98 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=39.7
Q ss_pred HhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 046956 375 MNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVED 450 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 450 (574)
.+.+.|++++|.+.|++..+ .+...|..+..+|...|++++|+..+++..+. .|+ ...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444555555555544431 23344445555555555555555555555442 222 2344444444555555555
Q ss_pred HHHHHHHhHh
Q 046956 451 GWRFFEAMQN 460 (574)
Q Consensus 451 a~~~~~~~~~ 460 (574)
|.+.|+++.+
T Consensus 93 A~~~~~~al~ 102 (477)
T 1wao_1 93 ALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=8.7e-06 Score=67.09 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PE 469 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 469 (574)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666665544210 011 125556666667777777777777766542111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM----PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+..+...+...|++++|.+.+++. ....+ ...+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566677777777777777777655 11111 2345566677888888888988888888764
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=7.1e-06 Score=61.46 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566777778888888888888888888888888888888888888888888888888887764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.18 E-value=1.1e-05 Score=58.93 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 2233 46677777888889999999999999999999999999999988887
Q ss_pred hcC
Q 046956 546 TAD 548 (574)
Q Consensus 546 ~~g 548 (574)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=7e-06 Score=80.88 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...|..+..++.+.|++++|+..++++++++|+++.+++.++.+|...|++++|...|+++.+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467788889999999999999999999999999999999999999999999999999999987654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=2.3e-06 Score=68.68 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=60.9
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
+.+.+++|.+.++...+ --+.+...|..+..++...|+++.+...+ +.+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHH
Confidence 34455566666665554 22334555555555555554443222211 1256888888
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcC-----------CchHHHHHHHHHHhCCC
Q 046956 524 NRLFELEPQNAGSYVLLSNIYATAD-----------RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~ 565 (574)
+++++++|+++.+|+.++.+|...| ++++|.+.|++..+.++
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 8888888888888888888887764 78888888887776543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=9.1e-06 Score=65.27 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=86.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLV----------EDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
.+.+.+++|...+++..+. .| +...|..+..++...+++ ++|+..|+++++. -+.+...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 4667899999999999985 45 556888888888888765 4777777777752 2224566777777
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+|...|.+ .|+... ..|++++|++.|+++++++|++......+-.+ ++|.++
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~-------~ka~el 140 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQL 140 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHH
T ss_pred HHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HhCHhc
Confidence 77666543 343311 13689999999999999999987655554332 555555
Q ss_pred HHHHHhCC
Q 046956 557 RSKMKERG 564 (574)
Q Consensus 557 ~~~~~~~~ 564 (574)
.-.+...+
T Consensus 141 ~~~~~~~~ 148 (158)
T 1zu2_A 141 HAEAYKQG 148 (158)
T ss_dssp HHHHHHSS
T ss_pred cCcccccc
Confidence 55555443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=2e-05 Score=60.70 Aligned_cols=79 Identities=13% Similarity=-0.019 Sum_probs=45.1
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
|+..|+++.+ ..+.+...+..++..|...|++++|++.++++ ...| +...|..+..++...|++++|+..++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555554 23334555666666666666666666666655 2223 344555555666666666666666666666
Q ss_pred hCC
Q 046956 529 LEP 531 (574)
Q Consensus 529 ~~p 531 (574)
+.|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 554
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=1e-05 Score=77.05 Aligned_cols=114 Identities=9% Similarity=-0.030 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACK 511 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 511 (574)
..+..+...+.+.|++++|+..|+++.+.. +... .....+++.+ ..| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 456777777888888888888888877520 1100 0011111111 122 3567788889999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...++++.+...
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999887553
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.08 E-value=2.7e-05 Score=56.96 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 046956 498 PHASAWGALLGACKLYSD---IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 498 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 570 (574)
.++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+.+.. .|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 456677777777655544 699999999999999999999999999999999999999999999998876 554
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=3.6e-05 Score=77.62 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=125.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGL----------VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 479 (574)
...++|++.++++++ ..|+.. .|+.-..++...|+ +++++..++.+.+ ..+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345788999999999 466654 67666666666666 8999999999997 45567788888888889
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-------
Q 046956 480 RTG--HLKSAYELLNSM-PVEP-HASAWGALLGACKLYS-DIELGELVANRLFELEPQNAGSYVLLSNIYATA------- 547 (574)
Q Consensus 480 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 547 (574)
+.| +++++++.++++ ..+| +..+|+.....+...| .++++++.++++++.+|.+..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3344 6888988888888888 899999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHHHhCCCc
Q 046956 548 -------DRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 548 -------g~~~~a~~~~~~~~~~~~~ 566 (574)
++++++.+.+++++..++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999888876543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.02 E-value=9.3e-05 Score=59.10 Aligned_cols=89 Identities=8% Similarity=-0.029 Sum_probs=44.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh---
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQNAGSYVLLSNIYAT--- 546 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 546 (574)
+...|...+..++|++.|++.-...+......+...|.. .+|+++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333333444444444443112233444444444444 45556666666655554 445556666666665
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 046956 547 -ADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 547 -~g~~~~a~~~~~~~~~~~ 564 (574)
.+++++|..++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666665554
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.9e-05 Score=59.21 Aligned_cols=68 Identities=7% Similarity=-0.093 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
+...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999876643
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00027 Score=56.33 Aligned_cols=111 Identities=6% Similarity=-0.061 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKS 486 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 486 (574)
+++++|+.+|++..+.| .|+.. |...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 57889999999999987 44444 777788888899999999999874 466778888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELE 530 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 530 (574)
|.+.|++.-...+......+...|.. .+|+++|+..++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988434577788888888888 899999999999998874
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=7.4e-05 Score=54.39 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456777778899999999999999999999999999999999999999999999999999987653
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=8.8e-05 Score=72.91 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CCC---Cc-HHHHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSE---GLT---PDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AIV---PS-PEHYAC 473 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~---g~~---p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~ 473 (574)
+..+|++++|+.++++.++. -+. |+. .+++.|...|...|++++|..+++++...+ -+. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666555431 111 222 256666666777777777776666654321 111 22 355667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 474 MVDLLGRTGHLKSAYELLNSM---------PVEPHASAW-GALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
|+..|...|++++|..+++++ +..|+.... ..+..++...+.+++|+..|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777665 223433332 33336677788888888888887663
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=0.0001 Score=56.63 Aligned_cols=62 Identities=5% Similarity=-0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555555555443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.71 E-value=0.0016 Score=60.22 Aligned_cols=138 Identities=11% Similarity=0.011 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc---C-----cHHHHHHHHHHhHh
Q 046956 395 RDVVSYCSMIKGLS--IHG---HGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHV---G-----LVEDGWRFFEAMQN 460 (574)
Q Consensus 395 ~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~ 460 (574)
.+...|...+++.. ..+ +..+|..+|++.++ ..|+. ..+..+..+|... + ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666665533 333 34789999999998 56764 3555444444210 0 11111112222111
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
....+.++.+|..+...+...|++++|...++++ ..+|+...|..+...+...|++++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1133455667777766666678888888777776 3456666665666777777888888888888888877754
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.59 E-value=1.2e-05 Score=75.41 Aligned_cols=258 Identities=11% Similarity=0.060 Sum_probs=124.3
Q ss_pred cchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHHHHHHHH
Q 046956 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYA 213 (574)
Q Consensus 136 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 213 (574)
...|..|.++....+.+.+|++-|-+ .-|+..|..+|....+.|.+++-...+....+ ++...=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34555566666555555555443311 23445556666666666666666666555543 34444455666666
Q ss_pred hcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046956 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293 (574)
Q Consensus 214 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (574)
+.++..+..+++ ..++..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|+++.|.+.-++ ..
T Consensus 128 k~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--An 197 (624)
T 3lvg_A 128 KTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--AN 197 (624)
T ss_dssp TSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT--CC
T ss_pred hhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 666655433322 224444555555666666666666555553311 01111112222222222211111 12
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
++.+|..+-.+|...+.+.-|.-.--.+.-. || ....++..|...|.+++.+.+++... |.+.....++..|+
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELa 270 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELA 270 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHH
Confidence 4556666666666666666554333222211 11 11224444556666666666655544 22222223566666
Q ss_pred HHhHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 046956 374 DMNAKCGNMDRAAELFETMPN-----------RDVVSYCSMIKGLSIHGHGRQAV 417 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~ 417 (574)
-.|++- +.++..+.++.... .....|..++-.|....++|.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666653 33444444333221 23345666666666666666554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00017 Score=53.53 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=61.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM-PVEP-HAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
..+..+.+.|++++|.+.++++ ...| +.. .+..+..++...|++++|+..++++++++|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3566788899999999999887 3445 456 77788888999999999999999999999999887733 34
Q ss_pred chHHHHHHHH
Q 046956 550 WLDVCLVRSK 559 (574)
Q Consensus 550 ~~~a~~~~~~ 559 (574)
+.++...+++
T Consensus 77 ~~~a~~~~~~ 86 (99)
T 2kc7_A 77 VMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.56 E-value=0.00011 Score=70.85 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=57.7
Q ss_pred ccCcHHHHHHHHHHhHhhc--CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVY--AIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM---------PVEPH-ASAWGALL 507 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 507 (574)
..|++++|..++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577788887777765431 12222 355666777777777777777766654 12333 23456666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-----CCCCchhH
Q 046956 508 GACKLYSDIELGELVANRLFEL-----EPQNAGSY 537 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 537 (574)
..|..+|++++|+.++++++++ .|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 6677777777777777777776 45555443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.45 E-value=0.00083 Score=49.66 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPE-HYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKLYSD 515 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 515 (574)
...+...|++++|...++++.+. .+.+.. .+..++.+|...|++++|.+.|+++ ...|+. ..+.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 34455666666666666666652 233345 5666666666666666666666665 223322 11110 34
Q ss_pred HHHHHHHHHHHHhhCCCCc
Q 046956 516 IELGELVANRLFELEPQNA 534 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~ 534 (574)
+.++...+++....+|+++
T Consensus 77 ~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 5555556655555555443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.44 E-value=0.00089 Score=64.62 Aligned_cols=86 Identities=6% Similarity=-0.001 Sum_probs=64.9
Q ss_pred HcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CC---CCc-HHHHHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSE---GLTPD---E-VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AI---VPS-PEHYACMV 475 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~---g~~p~---~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~l~ 475 (574)
..|++++|+.++++.++. -+.|+ . .+++.|..+|...|++++|..+++++...+ -+ .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 358899999999887652 22333 2 378888999999999999999998876531 11 233 36688899
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 046956 476 DLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~ 494 (574)
..|...|++++|..+++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999998876
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.43 E-value=0.00063 Score=50.58 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666777777777777777766632 22344666666677777777777777776664
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.41 E-value=0.00041 Score=67.11 Aligned_cols=104 Identities=10% Similarity=-0.073 Sum_probs=71.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc--CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-H
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVY--AIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM---------PVEPH-A 500 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~ 500 (574)
..+..+...|++++|+.++++..... -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33445667788888888888776531 12222 356777888888888888888877765 23343 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCchhHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFEL-----EPQNAGSYVLL 540 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~l 540 (574)
.+++.+...|..+|++++|+.++++++++ .|++|.+-..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 45667777888888888888888888888 57777665544
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.39 E-value=0.013 Score=44.40 Aligned_cols=148 Identities=9% Similarity=0.071 Sum_probs=105.7
Q ss_pred HHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 400 YCSMIKG--LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 400 ~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
...|+.+ +.-.|..++..++..+... ..+..-|+.++.-....-+-+-..++++..-+.+.+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc-------------
Confidence 3444443 3456788888888888776 334556666666555555556666666665542222
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
..+|++......+-.+. .+...+...+..+..+|.-++-.+++...+..+|.+|.....++.+|.+.|+..+|.+++
T Consensus 72 -s~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp -GGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 24566666666655553 344566667788899999999999999987888888999999999999999999999999
Q ss_pred HHHHhCCCc
Q 046956 558 SKMKERGLR 566 (574)
Q Consensus 558 ~~~~~~~~~ 566 (574)
.++-++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999985
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.35 E-value=4.8e-05 Score=71.58 Aligned_cols=233 Identities=10% Similarity=0.117 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhc
Q 046956 69 HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148 (574)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 148 (574)
+.+|+.|- ......+.+.+|+..| +...|+..|..++.+..+.|++++-+..+.-.++..- +...=+.|+-+|++
T Consensus 54 p~VWs~Lg-kAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLA-KAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHH-HHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred ccHHHHHH-HHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45566666 7777777777777765 3445666788888888888888888888766655532 44445678888888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC------------------------CChhh
Q 046956 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE------------------------RNVVS 204 (574)
Q Consensus 149 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 204 (574)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766554442 46666666777777778888888777776542 35566
Q ss_pred HHHHHHHHHhcCChHHHHHHH-hhcCCCCcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCCh
Q 046956 205 WTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDM 280 (574)
Q Consensus 205 ~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 280 (574)
|-.+-.+|...+.+.-|.-.- +-+..+| -...++..|-..|-+++-..+++ ++.......|+-|.-.|++- +.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 777777777766665443221 1111111 11123334555666666666666 44345667788888888765 44
Q ss_pred HHHHHHHhhCCC----C-------CHhHHHHHHHHHHhCCCchHHHH
Q 046956 281 TSARSLFEAAPD----R-------DVVAWSALISGYAQNGQPDEAVK 316 (574)
Q Consensus 281 ~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~A~~ 316 (574)
++..+.++..-. | ....|..++-.|.+-.+++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 555544443222 2 34568888888888888886653
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.31 E-value=0.00091 Score=59.14 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=67.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHh-cCCchH
Q 046956 484 LKSAYELLNSM-PVEPH---ASAWGALLGACKL-----YSDIELGELVANRLFELEPQN-AGSYVLLSNIYAT-ADRWLD 552 (574)
Q Consensus 484 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 552 (574)
..+|...++++ ...|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..+++.+++.++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45665 4566666677777 489999999999999999974 9999999998888 489999
Q ss_pred HHHHHHHHHhCCCccCCCc
Q 046956 553 VCLVRSKMKERGLRKIPGC 571 (574)
Q Consensus 553 a~~~~~~~~~~~~~~~~~~ 571 (574)
+.+++++.....++..|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999988887765653
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.0015 Score=63.19 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=66.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC---CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CCC---Cc-H
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEG---LTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AIV---PS-P 468 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---p~-~ 468 (574)
..+..+...|++++|+.++++.++.. +.|+. .+++.+..+|...|++++|+.+++++...+ -+. |+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33555667888889988888887531 22332 377888888888899999988888776431 112 22 3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
.+++.|+..|...|++++|..+++++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66778888888899999888888776
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.23 E-value=0.023 Score=60.46 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=88.5
Q ss_pred HHHhcCChHHHHH-HHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 046956 211 GYASVGDLVEAKT-VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289 (574)
Q Consensus 211 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (574)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. + ..-.......|++++|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHHHh
Confidence 3345677777766 443322 012225566666667777777666542 1 1113445667888888888776
Q ss_pred CCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+.+.....| .+
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-------~~ 739 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-------KF 739 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-------ch
Confidence 64 456788888888888888888888887642 2233333444555555444444444333 23
Q ss_pred HHHHHHhHhcCCHHHHHHHHhh
Q 046956 370 AALVDMNAKCGNMDRAAELFET 391 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~ 391 (574)
+.....|.+.|++++|.+++.+
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344455666777766665543
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.0033 Score=58.12 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHh--cc---CcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhh---cC-----C---HHHHHHH
Q 046956 428 LTPDEVAFTIVLTACS--HV---GLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGR---TG-----H---LKSAYEL 490 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 490 (574)
.+.+...|...+.+.. .. ....+|..+|+++++. .|+ ...|..+..+|.. .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3555567777666533 22 3457899999999964 454 4555544444421 11 1 1122222
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 491 LNSMP-VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 491 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+. ...++..+..+...+...|++++|+..+++++.++|+ ...|..+++++...|++++|.+.+++....++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22332 2346777777777777789999999999999999975 77888999999999999999999999887654
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.11 E-value=0.004 Score=46.48 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-----P----VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
...+..++..+.+.|+++.|...++.+ . ..+....+..+..++.+.|+++.|+..+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666666666666666554 0 1134567778889999999999999999999999999988877
Q ss_pred HHH
Q 046956 539 LLS 541 (574)
Q Consensus 539 ~l~ 541 (574)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.0032 Score=49.90 Aligned_cols=90 Identities=18% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG---HLKSAYELLNSM-PVE-P--HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..+.+.|.+... .-.++..+...+..++.+.+ +.++++.+++.. ... | ....+..+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444443 22245555555666666655 444666666555 222 3 23455556677888999999999
Q ss_pred HHHHHHhhCCCCchhHHHH
Q 046956 522 VANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l 540 (574)
.++.+++.+|++..+....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHH
Confidence 9999999999887766554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.02 E-value=0.002 Score=51.06 Aligned_cols=81 Identities=9% Similarity=-0.097 Sum_probs=66.1
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 485 KSAYELLNSM--PVEPHASAWGALLGACKLYS---DIELGELVANRLFELE-P-QNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 485 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
..+.+.|.+. ...++..+...+..++.+.+ +.++++.++++.++.+ | ++...++.|+..|.+.|++++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444445443 23467888888889999988 7779999999999998 7 56889999999999999999999999
Q ss_pred HHHHhCCC
Q 046956 558 SKMKERGL 565 (574)
Q Consensus 558 ~~~~~~~~ 565 (574)
+.+.+..+
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 99987554
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.69 E-value=0.63 Score=46.91 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 411 GHGRQAVSLFDRMLSEG-LTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
.+.+.|...+......+ +.+... ....+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 47789999998886543 322222 2333444445555355666666665442 23333344444555678999999
Q ss_pred HHHHHhCCCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 488 YELLNSMPVEP-HASAWGA-LLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 488 ~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
...|+.++..+ +..-|.. +..++...|+.++|..+|+++.+ +. ..|-.|
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~l 355 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMV 355 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHH
Confidence 99999995433 2232322 33677788999999999998875 32 445544
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.63 E-value=0.017 Score=41.87 Aligned_cols=71 Identities=13% Similarity=0.018 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 465 VPSPEHYACMVDLLGRTGH---LKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
+.++..+..+..++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..|+++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566777777777754444 68888888877 44554 556666668888899999999999999998888443
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.46 E-value=0.19 Score=53.33 Aligned_cols=169 Identities=19% Similarity=0.103 Sum_probs=107.3
Q ss_pred HHHHcCCChHHHHH-HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHh
Q 046956 179 DLYGKRKEISCARK-VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257 (574)
Q Consensus 179 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (574)
......+++++|.+ ++..+.. ......++..+.+.|.+++|+++.+. . ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 34456788888888 6644431 22236777778888999988876642 1 122344567899999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...+...|+.+...++-+....
T Consensus 677 ~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~-------------- 735 (814)
T 3mkq_A 677 DE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAET-------------- 735 (814)
T ss_dssp TC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred hh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 76 4668899999999999999999998877654 22333344445555554444443333
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
.|+.+.|...+...- -+...+++|.+.+++++|..+-+...
T Consensus 736 -----~~~~~~A~~~~~~~g----------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 736 -----TGKFNLAFNAYWIAG----------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp -----TTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred -----cCchHHHHHHHHHcC----------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344444443332211 23445566677788888877766544
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.36 E-value=0.016 Score=43.09 Aligned_cols=66 Identities=15% Similarity=-0.032 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELE-------PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+......+...+...|+++.|+..++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556678888999999999999999999863 2446789999999999999999999999987644
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.34 E-value=0.063 Score=40.81 Aligned_cols=90 Identities=18% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS---AYELLNSM-PVE-P--HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..+.+.|...... +. ++..+--.++.++.+..+..+ ++.+++.+ ... | .......+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444445444442 22 566666666777777666555 66666665 222 3 12334445578889999999999
Q ss_pred HHHHHHhhCCCCchhHHHH
Q 046956 522 VANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l 540 (574)
.++.+++..|++..+....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999988776554
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.33 Score=39.44 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=56.9
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHH
Q 046956 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 351 (574)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777766655 3556677777777777777777777766532 2223333444555544444
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
+-+.....| -++.....+...|+++++.++|.+..
T Consensus 82 la~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 433333322 13333344445566666666555443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.23 Score=40.44 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=71.6
Q ss_pred HHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046956 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 453 (574)
.....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... +..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776655 3456777777777777777777777766432 2333334445566655554
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.. .......|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 44444332 1 1333344455677777777777766422211 11223355566666665543
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.027 Score=57.81 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
...|...|+++.|+.+.+++....|.+...|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567789999999999999999999999999999999999999999999998874
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.44 E-value=0.13 Score=40.09 Aligned_cols=110 Identities=6% Similarity=-0.045 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHhccCcH------HHHHHHHHHhHhhcCCCCcHH-HHHHHHH------HHhhcCCHHHHHHHHHhC-C
Q 046956 430 PDEVAFTIVLTACSHVGLV------EDGWRFFEAMQNVYAIVPSPE-HYACMVD------LLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 430 p~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~-~ 495 (574)
-|..+|-..+....+.|+. ++..++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+ .
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456787777777777888 888899998887 6777631 1111111 123447777788877776 1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 496 VE-PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 496 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
.. .=...|......-.++|+...|.+++.+++.+.|.....+....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 11 11556666666677788888888888888888777665554443
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.30 E-value=1.7 Score=39.61 Aligned_cols=167 Identities=15% Similarity=0.103 Sum_probs=99.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF----DRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++. +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 677778888899999999887643 233445566665554443 44455677788777777777665
Q ss_pred ccCc--HHHHHHHHHHhHh---hcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 046956 444 HVGL--VEDGWRFFEAMQN---VYA--IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516 (574)
Q Consensus 444 ~~g~--~~~a~~~~~~~~~---~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 516 (574)
.... ... ..+.+++++ ..| -.-++.....+...|.+.|++.+|...|- .+.++.+..+..++.-+...+
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~-- 181 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD-- 181 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS--
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc--
Confidence 5432 111 222222211 113 33467778889999999999999999884 333344455555543332222
Q ss_pred HHHHHHHHHHHhhCCCCchhHHH-HHHHHHhcCCchHHHHHHHHHHh
Q 046956 517 ELGELVANRLFELEPQNAGSYVL-LSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.|.....+.. .+--|...|+...|..+++...+
T Consensus 182 -------------~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 -------------ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2333333332 23346778888888887776664
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.17 E-value=0.16 Score=39.69 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH---H---HhccCcHHHHHHHHHHhHh
Q 046956 394 NRDVVSYCSMIKGLSIHGHG------RQAVSLFDRMLSEGLTPDEV-AFTIVLT---A---CSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~l~~---~---~~~~g~~~~a~~~~~~~~~ 460 (574)
..|..+|-..+...-+.|+. ++..++|++.... ++|+.. .+...+. - +...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35777888888888888888 8888888888775 677642 2222222 2 2234778888888888876
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
. .-.- ...|...+..-.++|++..|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 2222 777777788888889999998888776
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.04 E-value=0.07 Score=40.57 Aligned_cols=82 Identities=7% Similarity=-0.137 Sum_probs=62.4
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCchHHHHH
Q 046956 484 LKSAYELLNSM--PVEPHASAWGALLGACKLYSDIEL---GELVANRLFELE-P-QNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 484 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+..+.+.+.+. ...++..+--.+..++.+.++... ++.+++..++.+ | ......+.|+-.+.+.|+|++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433 124677777778888888876655 999999998886 5 5667889999999999999999999
Q ss_pred HHHHHhCCC
Q 046956 557 RSKMKERGL 565 (574)
Q Consensus 557 ~~~~~~~~~ 565 (574)
++.+.+..+
T Consensus 97 ~~~lL~~eP 105 (126)
T 1nzn_A 97 VRGLLQTEP 105 (126)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 999987543
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.89 E-value=1.9 Score=38.23 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHhhCCCCCh--hHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 046956 379 CGNMDRAAELFETMPNRDV--VSYCSMIKG-LSIH--GH------GRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSH 444 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 444 (574)
.++..+-.+.+.++.+.++ ..|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444555555666554333 345555543 2322 22 4466666777776 4566 2466666666666
Q ss_pred c-----CcHHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 046956 445 V-----GLVEDGWRFFEAMQNVYAIVP--SPEHYACMVDLLGRT-GHLKSAYELLNSM 494 (574)
Q Consensus 445 ~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 494 (574)
. |+.++|.+.|++..+. .| +..++..+.+.+++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 7777777777777753 33 355666666666663 6777777777665
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.10 E-value=6.9 Score=41.24 Aligned_cols=252 Identities=10% Similarity=-0.012 Sum_probs=134.1
Q ss_pred HHHHhcCChHHHHHHHhhCCC----CC--HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 046956 272 DGYAKVGDMTSARSLFEAAPD----RD--VVAWSALISGYAQNGQPDEAVKIFSDMCSKNV-------QPDEFILVSLMS 338 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~ 338 (574)
-+....|+.++++.+++.... .+ +..-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667888888888887664 22 22333444556666766778887777654321 011112222222
Q ss_pred HHhccCCc-chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-CChhHH--HHHHHHHHHcCChH
Q 046956 339 ACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSY--CSMIKGLSIHGHGR 414 (574)
Q Consensus 339 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~~~~~ 414 (574)
++...|.- +++...+..+............-..++..+.-.|+-+....++..+.+ .+.... -.+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 33333432 344444444443222111111233455556667777777777665442 222222 33334445678888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEV-AFT---IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~-~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
.+..+.+.+... .++. -|. .+..+|+-.|+.....+++..+.. ....+..-...+.-++...|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888763 3333 232 345567888998877778888886 3333344333444455556776667777
Q ss_pred HHhCCCCCCHHHHHHH--HHHHHhcCCH-HHHHHHHHHHHh
Q 046956 491 LNSMPVEPHASAWGAL--LGACKLYSDI-ELGELVANRLFE 528 (574)
Q Consensus 491 ~~~~~~~p~~~~~~~l--~~~~~~~~~~-~~a~~~~~~~~~ 528 (574)
++.+....|..+-... ..+....|.. .+++..+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7655222333332222 2333333332 567777777643
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.01 E-value=0.87 Score=35.27 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 465 VPSPEHYACMVDLLGRTGHLK---SAYELLNSM-PVEP-HA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
.|+..+--.++.++.+..+.+ +++.+++.+ ...| +. .....+.-++.+.|++++|.++.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 577777777788888877554 566677666 3334 23 34445558889999999999999999999999877655
Q ss_pred HH
Q 046956 539 LL 540 (574)
Q Consensus 539 ~l 540 (574)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 241
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.70 E-value=2.7 Score=35.17 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (574)
.+..+.+.|+.+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-...+.++.+.++.+....+.
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~ 113 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLI 113 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33333333333333333333334444444444445555554433333333343444444444444444444443333333
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCC
Q 046956 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309 (574)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 309 (574)
..+..++..+-...+.+..+.++.+....+.+.+.+++...-...+.++...|
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33334444444444444444444333333333333344444444444444443
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.53 E-value=3 Score=35.20 Aligned_cols=146 Identities=12% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHH
Q 046956 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255 (574)
Q Consensus 176 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (574)
..+..+.+.|+.+....+.+.+.++|...-...+.++...|..+..-.+.+.+..++...-...+.++.+.++.+....+
T Consensus 38 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L 117 (211)
T 3ltm_A 38 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPL 117 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33333333343333333333333344444444444444444433333333333334444444444444444443333333
Q ss_pred HhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
...+..++..+-...+.+..+.|+.+....+.+.+.+++...-...+.++.+.+. .++...+..+.
T Consensus 118 ~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3333344554444555555555544333333333334444444444444444443 33444444443
No 243
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.47 E-value=3.1 Score=35.14 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=95.7
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchh
Q 046956 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265 (574)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 265 (574)
+.+....+.+.+..+|...-...+..+.+.|..+..-.+.+.+..++...-...+.++...++.+....+...+..++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33444444555555666666666777777777555555556566666666666677777777665555555566567777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 345 (574)
+-...+.+..+.|+.+....+.+.+.+++...-...+.++...|.. ++...+..+.+ .++..+-...+.++...+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777777777765555555556666766666666666666653 34444444443 3455555555666655554
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.23 E-value=4.2 Score=38.19 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=25.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
++..|...|++.+|..++.++.+...-..+ .+++..-++.|...|++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555555554443111111 133334444455555555555544433
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.98 E-value=0.77 Score=36.65 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=63.3
Q ss_pred CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 046956 427 GLTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-------EHYACMVDLLGRTGHLKSAYELLNSM--- 494 (574)
Q Consensus 427 g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 494 (574)
|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|+++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444433 34444556677778888777777655432233331 34555667777777777777777663
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 495 -PVEPHAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 495 -~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+.-+... ....+. . ..... .-.. .+.+.+.-+.++.+|.+.|++++|..+++.+.
T Consensus 93 ~k~l~k~~s~~~~~~-~---~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N---SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc-c---cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1001000 000000 0 00000 0001 13344677889999999999999999987653
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.94 E-value=0.47 Score=36.23 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 464 IVPSPEHYACMVDLLGRTGHL---KSAYELLNSM-PVEP-H-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 464 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
-.|++.+--.++.++.+..+. .+++.+++.+ ...| . ...+..+.-++.+.|+++.|.+..+.+++..|+|..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345666666677777776654 3566666665 2334 2 34455566788888999999999999888888887765
Q ss_pred HHH
Q 046956 538 VLL 540 (574)
Q Consensus 538 ~~l 540 (574)
...
T Consensus 116 ~Lk 118 (134)
T 3o48_A 116 ALK 118 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 247
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.85 E-value=2.5 Score=32.35 Aligned_cols=135 Identities=16% Similarity=0.042 Sum_probs=89.1
Q ss_pred HhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 377 AKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.-.|..++..++..+..+ .+..-||=+|.-....-+-+-..+.++..-. --| ....|+.......+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHHH
Confidence 445788888888877663 3445555555555555555555555544332 111 12345555555555
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS-M-PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
-.+- .+.+....-++.+..+|..++-.+++.. . ..+|++..+..+..+|.+.|+..+|.+++.++-+..
T Consensus 85 ~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 85 VINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4332 2445556667788889999999999988 4 456788888889999999999999999999987764
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.79 E-value=0.57 Score=37.42 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=27.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC-CCCC-----H--HHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEG-LTPD-----E--VAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+..+...|.++.|+-+.+.+.... ..|+ . .++..+.+++...|++..|...|+++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344445555555555554433210 1122 1 1445555566666666666666666543
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.41 E-value=0.76 Score=35.09 Aligned_cols=73 Identities=10% Similarity=-0.083 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 046956 428 LTPDEVAFTIVLTACSHVGL---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS 501 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 501 (574)
-.|+..|--.+..++.+..+ ..+++.+++.+.+. +..-..+.+..+.-++.+.|++++|.++.+.+ ..+|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 35666655555556665543 45677888877764 32123566667777888888888888888877 6667543
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.38 E-value=4.8 Score=38.84 Aligned_cols=181 Identities=10% Similarity=0.127 Sum_probs=115.3
Q ss_pred cCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH----Hhc
Q 046956 379 CGNMDRAAELFETMPN---------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTA----CSH 444 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~----~~~ 444 (574)
.|+++.|.+.+-.+.+ ........++..|...|+++...+.+.-+... |..+. ....+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 3678888887654431 23456777889999999999998887766543 32222 22333332 222
Q ss_pred cCcHH--HHHHHHHHhHhhc--CCCC---cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHH
Q 046956 445 VGLVE--DGWRFFEAMQNVY--AIVP---SPEHYACMVDLLGRTGHLKSAYELLNSMP-----VEPH---ASAWGALLGA 509 (574)
Q Consensus 445 ~g~~~--~a~~~~~~~~~~~--~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~ 509 (574)
....+ .-..+.+...... .+-. .......|+..|...|++.+|.+++..+. .... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23222 2222222221100 1111 22345678899999999999999998872 1121 2345555688
Q ss_pred HHhcCCHHHHHHHHHHHHhh---CCCCc----hhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 510 CKLYSDIELGELVANRLFEL---EPQNA----GSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~---~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
|...+|+.+|..++.++... .+.++ ..+...+..+...++|.+|.+.|.++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999987532 33333 367788999999999999998887764
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.18 E-value=3.1 Score=32.20 Aligned_cols=70 Identities=10% Similarity=-0.074 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 429 TPDEVAFTIVLTACSHVGL---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
.|+..+--.+..++.+..+ ..+++.+++.+.+. +..-..+....+.-++.+.|++++|.++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4455544444555555443 34566666666553 22223344455566666667777766666665 44554
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.98 E-value=14 Score=38.98 Aligned_cols=296 Identities=11% Similarity=0.095 Sum_probs=157.6
Q ss_pred HHHHHHHHhcCChHHH-HHH-HhhcCCC-CcchHHH-HHHHHHccCChHHHHHHHhcCCC----Cc--hhHHHHHHHHHH
Q 046956 206 TAMIVGYASVGDLVEA-KTV-FDLMPER-SNVSWNA-LIGGLVKIGDLRSARQLFDEMPE----RN--VVSYTTMIDGYA 275 (574)
Q Consensus 206 ~~li~~~~~~g~~~~a-~~~-~~~~~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~l~~~~~ 275 (574)
.++..++...|--.+. ++. .+++-+. +..-+.+ ..-+....|+.+++..++..... .+ ...-..+.-+..
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 3556777777754332 111 1111111 2222222 23345678888899999986543 12 233344455566
Q ss_pred hcCChHHHHHHHhhCCC-CC----------HhHHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHHHH--HHHHHHh
Q 046956 276 KVGDMTSARSLFEAAPD-RD----------VVAWSALISGYAQNGQ-PDEAVKIFSDMCSKNVQPDEFILV--SLMSACS 341 (574)
Q Consensus 276 ~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~ 341 (574)
.+|..+++..++..... .+ +..-.++.-+++-.|. -+++.+.+..+....- +...... .+...+.
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 66766677776655332 22 1122333334444443 3467777777665421 1111122 2333345
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHH--hHhcCCHHHHHHHHhhCC-CCChh-HHH---HHHHHHHHcCChH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM--NAKCGNMDRAAELFETMP-NRDVV-SYC---SMIKGLSIHGHGR 414 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~~~~~ 414 (574)
..|+.+....++..+.+.. +.. +...++.+ +.-.|+.+.+..+++.+. ..+.. -|. ++.-+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~-vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGN-ITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHH-HHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHH-HHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 6677777777777766532 222 34334443 346677777777766655 23332 232 3445677889987
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH-HHHHHHHHh
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL-KSAYELLNS 493 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 493 (574)
....++..+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .++++.+..
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 7777998888742 22222233333344456666666777766665 3345554444455555555543 678888888
Q ss_pred CCCCCCHHHHHHHHHH
Q 046956 494 MPVEPHASAWGALLGA 509 (574)
Q Consensus 494 ~~~~p~~~~~~~l~~~ 509 (574)
+...++..+-...+.+
T Consensus 655 L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHTCSSHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHH
Confidence 8556666555444433
No 253
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.73 E-value=5.1 Score=33.40 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (574)
++...-...+.++.+.|+.+..-.+.+.+..++...-...+.++.+.++.+....+..-+..++..+-...+.+..+.|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333333444444444433333333333333433334444444444443333333333334455555555555555544
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.53 E-value=13 Score=37.53 Aligned_cols=344 Identities=10% Similarity=0.019 Sum_probs=166.5
Q ss_pred HHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchHHHHHHHHHccCChHH
Q 046956 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---ERSNVSWNALIGGLVKIGDLRS 251 (574)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 251 (574)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+- ...+..+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~l-- 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ-- 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS--
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCC--
Confidence 4445566677788887776666 33344444445666777787766666555442 12455566666666655432
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 046956 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331 (574)
Q Consensus 252 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 331 (574)
+....-.-+......|+...|..+...+..........++..+. +...+...... +.++..
T Consensus 153 -----------t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~ 213 (618)
T 1qsa_A 153 -----------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDF 213 (618)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHH
T ss_pred -----------CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChh
Confidence 22222223355556677777777766663222122222222222 22233222221 122222
Q ss_pred ---HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh---hHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHH
Q 046956 332 ---ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA---HVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSM 403 (574)
Q Consensus 332 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l 403 (574)
.+...+.-+.+. +.+.|...+....+...- +.. .....++......+...++...+.... ..+.....-.
T Consensus 214 ~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (618)
T 1qsa_A 214 TRQMAAVAFASVARQ-DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHH
Confidence 122222222332 556677776666543321 221 122223333334442444444444422 1222222223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (574)
+....+.|+++.|...|+.|.... ........-+..++...|+.++|..+|+.+... . .-|..+.. .+.|.
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa--~~Lg~ 362 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA--QRIGE 362 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH--HHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH--HHcCC
Confidence 333456799999999998876532 123444556677888899999999999988741 1 12332221 12221
Q ss_pred HHHHHHHHHhCCCCC---CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 484 LKSAYELLNSMPVEP---HASA---WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p---~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
.-. +......+ .... ....+..+...|....|...+..+.+.. ++.-...++......|.++.+....
T Consensus 363 ~~~----~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 363 EYE----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCC----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCC----CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 100 00000000 0000 1122344556677777777766665532 2333445555556666666555433
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.92 E-value=8.5 Score=42.39 Aligned_cols=80 Identities=9% Similarity=0.028 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh---hhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CChhHHHHHHHH
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR---AHVIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKG 406 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 406 (574)
-|..++..+.+.+..+.+.++-..+.+.....+. ...+..+.+.+...|++++|...+-.+.. .-......++..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3555555555666666666555555443222111 11455566666666666666655544331 112334444444
Q ss_pred HHHcC
Q 046956 407 LSIHG 411 (574)
Q Consensus 407 ~~~~~ 411 (574)
++..|
T Consensus 981 lce~~ 985 (1139)
T 4fhn_B 981 LTKQG 985 (1139)
T ss_dssp HHHHC
T ss_pred HHhCC
Confidence 44443
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.67 E-value=0.8 Score=43.37 Aligned_cols=59 Identities=17% Similarity=-0.009 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..++.++...|++++++..++.++..+|-+-..+..|..+|.+.|+..+|.+.|+++.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666777888888888887777887777888888888888888888877776643
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.35 E-value=3 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
+..+...|++++|..+.+...-||...|.+|... +.|..+++...+.++..+| .|....|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456678888888888888888888888776543 6677778877777776665 4444444
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.10 E-value=10 Score=34.14 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=98.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL----FDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.|.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 677788888888999999887643 23345566776665554 444555678888877777777665
Q ss_pred ccCcHH-HHHHHHHHhHh---hcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 046956 444 HVGLVE-DGWRFFEAMQN---VYA--IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY---S 514 (574)
Q Consensus 444 ~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~ 514 (574)
....-+ .-..+++++++ ..+ -.-++.....++..|.+.|++.+|...|-... .-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 11222222221 112 22467888889999999999999998776321 11344444444322222 3
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 046956 515 DIELGELVANRLFELEPQNAGSYV-LLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
...+ ...+. ..+--|...|+...|..+++...+
T Consensus 183 ~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred Ccch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 22221 122236677888888888877654
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.93 E-value=11 Score=34.05 Aligned_cols=168 Identities=8% Similarity=0.048 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHH----HHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK----IFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
|.++..=|.+.+++++|++++.. -...+.+.|+..-|.+ +++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34556677778888888877543 2334556677655554 45556667888888888888877766
Q ss_pred cCCcc-hHHHHHHHHH----HhCC-CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc---CCh
Q 046956 343 VGNLD-LSNWVDSYLS----RSHM-DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH---GHG 413 (574)
Q Consensus 343 ~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 413 (574)
....+ .-..+.+.++ +.+. +...+.+...++..|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43222 2233444443 3322 3333347888999999999999999877633222344444444333332 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
.++-- ..-..++ .|.-.|+...|..+++...+
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22111 1111222 34567888888888887664
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.74 E-value=2.8 Score=29.85 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
+..+...|++++|..+.+...-||...|.+|.. .+.|..+++...+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345677888888888888888888888877654 46788888888887777765 44444443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.70 E-value=0.37 Score=42.00 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+.+.|.+++|++....- +.+| |...-..++..++-.|++++|.+-++-+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44555555555544333 3334 2333334445555556666666555555555555
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.62 E-value=1.6 Score=31.26 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 412 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666777777778899999999999999999999999999999887533 33456776653
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.31 E-value=4.7 Score=44.39 Aligned_cols=65 Identities=6% Similarity=-0.199 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCch----hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEP-QNAG----SYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.-|..++..+.+.+.++.+.++.+.+++..+ ++.. .|..+.+.+...|++++|...+-.+.....
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 3455566667777777777777777776543 3221 466667777777777777777766655443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.01 E-value=4.3 Score=35.45 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=74.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHHhhc
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYACMVDLLGRT 481 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 481 (574)
...+.|+.++++.....-++.. +-|...-..++..++-.|++++|.+-++...+. .|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556788888888888877753 445567777888888899999999888887753 4442 334444433
Q ss_pred CCHHHHH-HHHHhC--C-CCCCHHHHHH-HHHH--HHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 482 GHLKSAY-ELLNSM--P-VEPHASAWGA-LLGA--CKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 482 g~~~~A~-~~~~~~--~-~~p~~~~~~~-l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
+... ++|..- + .--.+..|.. ++.+ ....|+.++|..+-.++++..|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1121 222211 1 1112223433 3344 34579999999999999988777554
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.14 E-value=4.2 Score=41.86 Aligned_cols=52 Identities=17% Similarity=0.074 Sum_probs=33.4
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (574)
|...|+++.|+.+-+++.. -.+-+-.+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456677777777766664 233345667777777777777777776666663
No 266
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.77 E-value=14 Score=32.65 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=8.3
Q ss_pred CCCHhHHHHHHHHHHhCCC
Q 046956 292 DRDVVAWSALISGYAQNGQ 310 (574)
Q Consensus 292 ~~~~~~~~~li~~~~~~~~ 310 (574)
+++...-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444443
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.28 E-value=5.2 Score=28.68 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=43.1
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+.-+..+-+..+......|+.....+.+++|.+.+++..|.++++-++..- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566666677777777888888888888888888888888887776553 333445666554
No 268
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.23 E-value=4.7 Score=38.08 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHHH
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHYA 472 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 472 (574)
..++..+...|+++++...+..+.... +-+...+..++.++.+.|+..+|++.|+.+.+ ..|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445666777788888888888777642 34566888888888888888888888877644 237777766544
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.20 E-value=7.3 Score=32.25 Aligned_cols=46 Identities=4% Similarity=-0.112 Sum_probs=23.3
Q ss_pred HHHHHHHHHhC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 484 LKSAYELLNSM---PVE-PHASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 484 ~~~A~~~~~~~---~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
..++.++|.-| ++. --+..|......+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44555555444 222 22444445555555566666666666665553
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.35 E-value=19 Score=32.72 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF----SDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
|.++..=|.+.+++++|++++-. -...+.+.|+..-|.++. +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44556778889999999887543 233455667765554443 555666888888888888887766
Q ss_pred cCCcch-HHHHHHHHH----HhC-CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 046956 343 VGNLDL-SNWVDSYLS----RSH-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416 (574)
Q Consensus 343 ~~~~~~-a~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 416 (574)
....+- -..+.+.++ +.| .+...+.+...++..|.+.+++.+|+..|---.++.+..+..++--+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 554321 122333332 333 233333478889999999999999999885322333345544443333322211
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
.++...-..++ -|.-.++...|..+++...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11112222223 35556788888887766554
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.13 E-value=3.6 Score=31.31 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 355666677777788999999999999999999999999999999874 3444556776653
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.12 E-value=28 Score=33.46 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHhh-cCCC--Cc--H
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDE---VAFTIVLTACSHVGLVEDGWRFFEAMQNV-YAIV--PS--P 468 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--p~--~ 468 (574)
....|...|...|++.+|..++..+... |..+.. ..+...++.|...+++..|..++.++... .... |+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888999999999999987642 322221 35666777899999999999999887532 1222 22 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
..+...+..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45667788888899999998877665
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.34 E-value=10 Score=27.04 Aligned_cols=81 Identities=15% Similarity=0.021 Sum_probs=59.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.....++|..+-+.+...|- ...+--.-+..+.+.|++++|..+.+...-||...|-+|..+ +.|..+++...+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44577888888888877653 222333334567789999999999999999999999877654 77888888887766
Q ss_pred cCCCC
Q 046956 228 MPERS 232 (574)
Q Consensus 228 ~~~~~ 232 (574)
+...+
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 65543
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.84 E-value=11 Score=26.96 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=59.9
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.....++|..+-+.+...|- ...+--.-+..+.+.|++++|..+.+...-||...|-+|..+ +.|..+++...+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44577888888888877653 222333334567789999999999999999999999877664 67888888887766
Q ss_pred cCCCC
Q 046956 228 MPERS 232 (574)
Q Consensus 228 ~~~~~ 232 (574)
+...+
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 65544
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.44 E-value=13 Score=29.16 Aligned_cols=49 Identities=6% Similarity=-0.008 Sum_probs=30.1
Q ss_pred HHHHHHHHHhh--CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 519 GELVANRLFEL--EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 519 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
+..+|..+... .-..+..|...+..+...|++++|.++++.-++++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55566665553 34455566666666667777777777776666655544
No 276
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.00 E-value=9.4 Score=29.10 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=44.1
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
.-+..+-++.+......|+.....+.+++|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455666667777778888888888888888888888888888776653 344556666654
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.00 E-value=14 Score=35.27 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=51.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS---EGLTPDEVAF--T 436 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~--~ 436 (574)
+...++..|.+.|+++.|.+.|.++.. .-+..+-..++.+...+++..+...+.+... .+-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777777777777777766552 2234556666666667777777766666543 2222222211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
.-+..+...+++..|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234456666666666665543
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.56 E-value=20 Score=28.67 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+..|......+...|++.+|.++|+..++.
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344444455555566666666666665554
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.27 E-value=7.9 Score=37.11 Aligned_cols=96 Identities=6% Similarity=-0.096 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhc-CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHH---
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVY-AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGA--- 505 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~--- 505 (574)
+...+...|.+.|+++.|.+.|.++.... +...-...+..+++.+...+++..+...++++ ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777778888888888887776642 12222456666777777777777777777665 11222221111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 506 -LLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 506 -l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
-+..+...+++..|-+.|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 112334566777777766666544
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.93 E-value=52 Score=30.81 Aligned_cols=127 Identities=10% Similarity=0.047 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCHhHHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCHHHH--
Q 046956 265 VSYTTMIDGYAKVGDMTSARSLFEAAPD--------RDVVAWSALISGYAQNG-QPDEAVKIFSDMCSKNVQPDEFIL-- 333 (574)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~-- 333 (574)
.....|...|.+.|+.++..+++..... +....-..++..+.... ..+.-.++..+..+... -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4556778888888888888888877654 12233455666655532 23333344444333210 011122
Q ss_pred ----HHHHHHHhccCCcchHHHHHHHHHHhCCCC----ChhhHHHHHHHHhHhcCCHHHHHHHHhhC
Q 046956 334 ----VSLMSACSQVGNLDLSNWVDSYLSRSHMDL----SRAHVIAALVDMNAKCGNMDRAAELFETM 392 (574)
Q Consensus 334 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (574)
..++..|...|++.+|..++..+.+.-... ....++..-+++|...|++.++...+...
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 134555666666666666655555421111 11123444455566666666666555443
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=64.66 E-value=55 Score=29.42 Aligned_cols=44 Identities=7% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 489 ELLNSMPVEPHA--SAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 489 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.+|...+.+|.. .++...+....+.+++..|-.+.++++++.|+
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 345555666643 35666778889999999999999999999986
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=62.48 E-value=1.4e+02 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh
Q 046956 106 TLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147 (574)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 147 (574)
.+|=-+.|.|++++|.++..+.... +.--...|...+..++
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 3555567788888888877665432 1111235666666665
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.40 E-value=50 Score=27.86 Aligned_cols=48 Identities=4% Similarity=-0.018 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 482 GHLKSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 482 g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.+..+...++..-++.- -+..|......+...|++.+|..+|+..++.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34443333333333322 3455666666677777777777777777765
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.02 E-value=78 Score=33.93 Aligned_cols=103 Identities=5% Similarity=-0.166 Sum_probs=57.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CC-------------------
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PV------------------- 496 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~------------------- 496 (574)
++..|...|.++-+.++. . -.+.++..-..++.+|...|++++|...|+++ ++
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 444555555555444322 1 22223333334556666666777776666665 11
Q ss_pred -CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCch----hHHHHHHHHHh
Q 046956 497 -EP---HASAWGALLGACKLYSDIELGELVANRLFEL-EPQNAG----SYVLLSNIYAT 546 (574)
Q Consensus 497 -~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~ 546 (574)
++ ....|..++..+.+.+-++-++++.+.+++. .++++. .+..+.++.+.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 00 1225566777788888888888888888875 455544 44444444443
No 285
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=56.01 E-value=43 Score=32.62 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
++...+....++.|...|.++..+.|++...|+.|+.+....|+.-+|.-.|-+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3344445556677888888888888888888888887777777766666555444
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.77 E-value=91 Score=25.82 Aligned_cols=83 Identities=11% Similarity=0.100 Sum_probs=55.7
Q ss_pred HHHHHHhhCC--CCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 046956 384 RAAELFETMP--NRDVV---SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEA 457 (574)
Q Consensus 384 ~A~~~~~~~~--~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 457 (574)
.+...|.... +.|+. .|-..+..+ ..+...++..+|..|..+|+--... .|......+...|++.+|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444433 24443 444444433 2344678889999999887766554 677777788888999999999999
Q ss_pred hHhhcCCCCcH
Q 046956 458 MQNVYAIVPSP 468 (574)
Q Consensus 458 ~~~~~~~~p~~ 468 (574)
-++. +-.|-.
T Consensus 141 GI~~-~A~P~~ 150 (202)
T 3esl_A 141 GAEN-NCRPYN 150 (202)
T ss_dssp HHHT-TCBSHH
T ss_pred HHHc-CCccHH
Confidence 8886 666653
No 287
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=54.36 E-value=1.9e+02 Score=29.34 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=17.1
Q ss_pred HHHHHHHHHh---cCChHHHHHHHhhcCCC
Q 046956 205 WTAMIVGYAS---VGDLVEAKTVFDLMPER 231 (574)
Q Consensus 205 ~~~li~~~~~---~g~~~~a~~~~~~~~~~ 231 (574)
+..||..|.+ ..++.+|++.|-.+...
T Consensus 356 ~arLI~~Yt~~F~~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 356 FANILANYTKSFRYSDPRVAVEYLVLITLN 385 (661)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Confidence 5566666664 46777777776666433
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.45 E-value=71 Score=24.19 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHHH
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
...++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+.....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 4556777778888888888888876552 2233444444544432 35677788888777766554443
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.46 E-value=2e+02 Score=30.76 Aligned_cols=49 Identities=6% Similarity=-0.085 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh---hhHHHHHHHHhHhcC
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR---AHVIAALVDMNAKCG 380 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 380 (574)
-|..++..+.+.+..+.+.++-+.+++.-...+. ..++..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677777788888888887777777754322111 125666666665544
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.30 E-value=60 Score=25.50 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHHH
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 4556777777788888888888776552 2233444444444322 34567777777777765554443
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.96 E-value=43 Score=32.59 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH--HHH-HHHHHHHhhcCCHHHHHHHHHhC
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP--EHY-ACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
..++.+++.|...+.++.|..+..+..--....++. ..| ..+++.+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356777777777777777777777664200001121 122 23456666777777777776654
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.00 E-value=56 Score=28.82 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=9.6
Q ss_pred HHhcCCChHHHHHHhhcc
Q 046956 79 CHSLATPLSYSTAVFNRI 96 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~ 96 (574)
..+..|+.+-...+++..
T Consensus 37 ~A~~~g~~~~v~~Ll~~g 54 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNAG 54 (285)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC
Confidence 334456666555555543
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.52 E-value=69 Score=26.29 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
..|.+.|.+++|.+++++.....+.+...-..|..+-.+..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 45777777777777777766666555555555554433333
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.57 E-value=47 Score=32.30 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSMPVE----PHA--SAWG-ALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
...++.+++.|...+.++.|.++..+.... ++. ..|. .++..+...+++.+|.+.+..+++.-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 466788888899999999999999887422 111 2222 2346677888999999999999888776543
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.94 E-value=1.5e+02 Score=26.62 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=20.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCCCCC
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMPNRD 396 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (574)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4456777777788888888888877543
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.13 E-value=1.5e+02 Score=25.66 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=28.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 324 (574)
.++..+-...+.+..+.|+......+.+.+.+++ .....+.++.+.|. .++...+.++.+.
T Consensus 203 d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 3444444445555555554433333333333333 22233445555555 3555555555543
No 297
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=42.02 E-value=2.6e+02 Score=27.36 Aligned_cols=67 Identities=6% Similarity=-0.109 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHH-hhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 497 EPHASAWGALLGACKLYSDIELGEL----VANRLF-ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
..|......+...+..+|..++-++ .++..+ +..|++......|-.-|.+.|++-+|.+++..+-..
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 3455555666677777776554432 122222 235677777888888889999999999999888776
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.00 E-value=1.2e+02 Score=26.46 Aligned_cols=78 Identities=9% Similarity=0.118 Sum_probs=32.3
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCChH
Q 046956 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV--GTSLIDLYGKRKEIS 188 (574)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 188 (574)
.+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+ +.+++.|..++... -...+...+..|+.+
T Consensus 38 A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 109 (285)
T 3kea_A 38 AIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109 (285)
T ss_dssp HHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 34456654443333 334333322212233344455665533 33344555443221 112223334455555
Q ss_pred HHHHHHcc
Q 046956 189 CARKVFDE 196 (574)
Q Consensus 189 ~A~~~~~~ 196 (574)
-+.-+++.
T Consensus 110 ~v~~Ll~~ 117 (285)
T 3kea_A 110 TVKLFVKK 117 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555544
No 299
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.83 E-value=1.5e+02 Score=24.49 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=39.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHhhcCCCC
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL-----VEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~p 466 (574)
+-.+.+.|+-++-+|++.| .|....-..++.+....|. ...|...++..... |.+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 4578999999999999999 7776677777777766664 33455555555554 6543
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.37 E-value=37 Score=28.67 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
+....+|..|...++....+..|...+..+...|++.+|.++|+.-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666676666666655566666666666666666666665543
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.24 E-value=43 Score=23.83 Aligned_cols=62 Identities=3% Similarity=0.049 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHH
Q 046956 55 QVHSHIIKKGLEQDHSLVAHFISLCHSL-A-TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVF 121 (574)
Q Consensus 55 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~-~-~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 121 (574)
.+.+++++.|+- +..-...+ -.. . .+.+.|.++++.++..+..+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I----~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDI----QRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHH----HTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHH----HhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 477778887742 23333322 233 2 57899999999999999999999999998777765553
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.61 E-value=1.4e+02 Score=22.59 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=39.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDV---VSYCSMIKGLSIHGH--GRQAVSLFDRMLSEGLTPD 431 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 431 (574)
....++.-|...|+.++|...++++..|.- .+...+..++-+.++ .+....++..+...|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345677778888899999999988875522 233333444444332 3456777777776664443
No 303
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=36.07 E-value=46 Score=25.02 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=6.8
Q ss_pred CcchHHHHHHHHHcCCC
Q 046956 170 DVFVGTSLIDLYGKRKE 186 (574)
Q Consensus 170 ~~~~~~~li~~~~~~g~ 186 (574)
+..+....+.++++.|+
T Consensus 55 ~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp CHHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333334444444443
No 304
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=35.40 E-value=87 Score=31.84 Aligned_cols=65 Identities=20% Similarity=0.042 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
.+.|.++.+.|+ ...............|++..|.++.+.++..+|+|..+...++++|.+.|.-.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456677777775 23334445556678999999999999999999999999999999998887433
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.58 E-value=1.9e+02 Score=23.79 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046956 299 SALISGYA---QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345 (574)
Q Consensus 299 ~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 345 (574)
-.+|+++. +..+.+.|+-.+.+|++.| .|.-..-..++.+...-|.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 33555554 5688999999999999999 6665555555556655554
No 306
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.21 E-value=2e+02 Score=23.89 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=43.6
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHhhcCCCC
Q 046956 402 SMIKGLS---IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL-----VEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 402 ~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~p 466 (574)
-+|+++. +-.+.+.|+-++-+|++.|-.|....-..++.+....|. ...|...++..... |.+-
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 108 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFPE 108 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 3444443 457899999999999999977777777777777666554 34455555555554 5543
No 307
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.59 E-value=1.7e+02 Score=22.88 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH
Q 046956 414 RQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 468 (574)
+++.++|..|..+|+--... .|......+...|++.+|.++|+.-++. +-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 34788888888887666544 6777777788889999999999888876 666643
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.33 E-value=3.3e+02 Score=26.06 Aligned_cols=149 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHhhccCCCChh-hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCC
Q 046956 73 AHFISLCHSLATPLSYSTAVFNRIVNPNTF-LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151 (574)
Q Consensus 73 ~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 151 (574)
+.++........+.+-|.++-.+.--|... .|..-...+...|++++|..+--.-.+.-.+ +..|.+.+-..=...|.
T Consensus 332 ~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLR-t~~Ti~rFk~vp~~pgq 410 (494)
T 1bpo_A 332 ENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR-TPDTIRRFQSVPAQPGQ 410 (494)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC-SHHHHHHHTTSCCCTTS
T ss_pred ccchhhhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccc-CHHHHHHHhcCCCCCCC
Q ss_pred cHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 046956 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 152 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
..--..+|..+.+.| ..+..--.-+++.-..+|+.+-..+.+.+ |..+++-=+--+.+..+..-|+.+|.+
T Consensus 411 ~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlvk~~d~~LAl~IY~~ 481 (494)
T 1bpo_A 411 TSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLVKSVDPTLALSVYLR 481 (494)
T ss_dssp CCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHHHHHCSHHHHHHHHH
T ss_pred CCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhhhhcCHHHHHHHHHH
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.56 E-value=1.4e+02 Score=22.99 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=21.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh
Q 046956 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (574)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.++..+..
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~a 57 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVA 57 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHH
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChh
Confidence 34445554443322 2223333344445556666665555555554
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.55 E-value=1.5e+02 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLN 492 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (574)
+.......+..+.+.|+-++|.++|=
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 34444455566667777777776663
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.32 E-value=1.2e+02 Score=23.84 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDV---VSYCSMIKGLSIHGH--GRQAVSLFDRMLSEGLTPD 431 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 431 (574)
....++.-|...|+.++|...++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 455677888888999999999998876532 233334444443222 3456677777776664433
No 312
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.79 E-value=2.1e+02 Score=25.68 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 489 ELLNSMPVEPHA--SAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 489 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.+|...+.+|.. .++...+....+.+++..|-.+.++++++.|+
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 345555666643 35566678889999999999999999999876
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.41 E-value=2.3e+02 Score=23.38 Aligned_cols=203 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHhHhCCCCCCcchHH--HHHHHHhccCCcHHHHHHHHHHHHhCCCCCcch---HHHHHHHHHcCCChHHHHHHHc
Q 046956 121 FTIFVRLIREEAVPDKYTFP--LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV---GTSLIDLYGKRKEISCARKVFD 195 (574)
Q Consensus 121 ~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~ 195 (574)
.++++.+.+.|..++..... ..+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~ 97 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH
Q ss_pred cCCCCChhhHH--HHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHH
Q 046956 196 EMPERNVVSWT--AMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSY 267 (574)
Q Consensus 196 ~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~ 267 (574)
.-..++..... +.+...+..|+.+-+..+++.-... +....+.+..+....+..+-..-+.+ .+...+....
T Consensus 98 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g 177 (240)
T 3eu9_A 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTC
T ss_pred cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCC
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCHhHHH--HHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 046956 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS--ALISGYAQNGQPDEAVKIFSDMCSKNVQ 327 (574)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~~~~ 327 (574)
.+.+...+..|+.+-+.-+++.-.+.+..... .-+....+.|+.+-+.-+++...+.++.
T Consensus 178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.59 E-value=2.1e+02 Score=22.70 Aligned_cols=54 Identities=6% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHH
Q 046956 415 QAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE 469 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 469 (574)
...++|..|..+|+--... .|......+...|++.+|.++|+.-++. +-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHH
Confidence 3677888888888766654 6777777788889999999999988886 6666543
No 315
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.50 E-value=1.5e+02 Score=20.63 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHH
Q 046956 53 LHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEV 120 (574)
Q Consensus 53 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 120 (574)
...+.+.+.+.|+- +..-...+. +.....+.|.++++.++..+..+|..++.++...|...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~----~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVR----NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHH----TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHH----cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45688888888852 333333333 4567889999999999999999999999999888765433
No 316
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.37 E-value=2.5e+02 Score=23.21 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHH--HHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHH--HHHHHH
Q 046956 106 TLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP--LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT--SLIDLY 181 (574)
Q Consensus 106 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~ 181 (574)
+.+...++.|+.+-+..+++.+.+.|..++..... +.+...+..|+.+ +++.+.+.|..++..... ..+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred HcCCChHHHHHHHcc------CCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHccCChHHH
Q 046956 182 GKRKEISCARKVFDE------MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS---WNALIGGLVKIGDLRSA 252 (574)
Q Consensus 182 ~~~g~~~~A~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a 252 (574)
+..|+.+-+..+++. -.......-.+.+...+..|+.+-...+++.-...+... -...+...+..|+.+-+
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Q ss_pred HHHHh---cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 046956 253 RQLFD---EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294 (574)
Q Consensus 253 ~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 294 (574)
..+++ .+ ........+.+...+..|+.+-+.-+++.-.+++
T Consensus 167 ~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 167 QLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.35 E-value=2.1e+02 Score=22.20 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=26.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC
Q 046956 321 MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 380 (574)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+...+|. -++.+...|
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR-~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYR-ILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHH-HHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHH-HHHHHHHCC
Confidence 4445555443332 233333344445566666666666655555553333 334444444
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.76 E-value=1.7e+02 Score=23.12 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHhHhCCCCC--CcchHHHHHH-H-----HhccCCcHHHHHHHHHHHH
Q 046956 114 NSRFIEVFTIFVRLIREEAVP--DKYTFPLVIK-A-----CSHVLSVREGTAIHAAVIR 164 (574)
Q Consensus 114 ~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 164 (574)
.|++-+|-++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 488888888888877664444 4456666666 2 2357888888888888765
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.47 E-value=1.9e+02 Score=24.60 Aligned_cols=31 Identities=3% Similarity=-0.364 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 497 EPHASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
.++.......+..+.+.|+.++|.++|-+..
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3455566666677788888888888775543
No 320
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.40 E-value=2.7e+02 Score=23.17 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=35.3
Q ss_pred hHHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046956 296 VAWSALISGYA---QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345 (574)
Q Consensus 296 ~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 345 (574)
..+..+|+++. +..+.+.|+-.+.+|++.|-.|.-..-..++.+...-|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33444566654 568999999999999999977776666666666655553
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.20 E-value=2.6e+02 Score=22.97 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=39.6
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHh
Q 046956 403 MIKGLS---IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL-----VEDGWRFFEAMQN 460 (574)
Q Consensus 403 li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~ 460 (574)
+|+++. +-.+.+.|+-++-+|++.|-.|....-..++.+....|. ...|...++....
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~ 75 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTR 75 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 344443 457899999999999999877777777777766666554 3345555555544
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.49 E-value=76 Score=22.53 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=25.5
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 046956 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 221 (574)
...+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567777777777777777777777777665665544
No 323
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.14 E-value=2.7e+02 Score=25.53 Aligned_cols=92 Identities=9% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC---CHhHHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 268 TTMIDGYAKVGDMTSARSLFEAAPDR---DVVAWSALISGYAQNG--QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
..++.-|...|+.++|.+.++++..| .......+..++-+.+ ..+...+++..+...|+-+.......+...+..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ 300 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 300 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Q ss_pred cCCcc----hHHHHHHHHHHh
Q 046956 343 VGNLD----LSNWVDSYLSRS 359 (574)
Q Consensus 343 ~~~~~----~a~~~~~~~~~~ 359 (574)
..+.. .|..++..+...
T Consensus 301 ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 301 IPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHH
T ss_pred ccHhhcccccHHHHHHHHHHH
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.91 E-value=4.1e+02 Score=24.07 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=14.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhC
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETM 392 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (574)
....++..+.+....+.+.++|.+.
T Consensus 143 fl~~vl~~l~~~~g~~~l~~~~~~s 167 (339)
T 1ug3_A 143 LLLEILGLLCKSMGPKKVGTLWREA 167 (339)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHc
Confidence 4444555555566666666666543
No 325
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.24 E-value=90 Score=19.75 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=20.0
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKAC 146 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 146 (574)
.++|.+.|.+|++..-.++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776655555667777777766
No 326
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.09 E-value=4e+02 Score=23.90 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=76.2
Q ss_pred CchHHHHHHHHhHhCC-----CCCCcchHHHH---HHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCh
Q 046956 116 RFIEVFTIFVRLIREE-----AVPDKYTFPLV---IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEI 187 (574)
Q Consensus 116 ~~~~a~~~~~~m~~~~-----~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 187 (574)
+-++|..+|..+...- ..|+....... +..+.+..+ -+++..+.+.|+.|...+..-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 4567888888876531 33443222221 222222222 35777888889988888888888888888888
Q ss_pred HHHHHHHccCCC--CChhhHHH--HH----HHHHhcCChHHHHHHHhh-cCCCCcchHHHHHHHHHccCC
Q 046956 188 SCARKVFDEMPE--RNVVSWTA--MI----VGYASVGDLVEAKTVFDL-MPERSNVSWNALIGGLVKIGD 248 (574)
Q Consensus 188 ~~A~~~~~~~~~--~~~~~~~~--li----~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 248 (574)
+.+.++++.+.. +....+-+ ++ .......+.++.+.+++. +...+......++........
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 999999887753 22222221 11 112234578888888887 443444445555544444443
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.97 E-value=2e+02 Score=22.04 Aligned_cols=36 Identities=8% Similarity=-0.041 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046956 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK 185 (574)
Q Consensus 150 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 185 (574)
+..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333444445554444443333333333333444433
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.91 E-value=68 Score=20.31 Aligned_cols=26 Identities=15% Similarity=-0.078 Sum_probs=15.3
Q ss_pred HhcCCchHHHHHHHHHHhCCCccCCC
Q 046956 545 ATADRWLDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 570 (574)
...|+.+.|...+-.|...+.+++.|
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 45566666666666666555555443
No 329
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.34 E-value=2.1e+02 Score=19.84 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 221 (574)
...+++.+.+.|+= +..-+..+ -......++|..+++.+..++..++..++.++.+.|...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I---~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKV---RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHH---HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHH---HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34566666666632 22222221 22356677888888888777778888888887777664444
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.17 E-value=1.8e+02 Score=22.99 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=39.4
Q ss_pred hHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHh--CCCCChhhHHHHHHHHhHhcCC
Q 046956 312 DEAVKIFSD-MCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS--HMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 312 ~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. ++..+...+|+. ++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRt-L~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRT-LNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHH-HHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHCCC
Confidence 334443333 444577766543 33455555666677788888888777 666666644544 445555553
No 331
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.08 E-value=2.7e+02 Score=24.86 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHHHH
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQ--PDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+......
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4556777778888888888888887652 2233344444444322 345667777777767665544433
No 332
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=20.98 E-value=7.6e+02 Score=26.12 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC------
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEP-HASAWGALLGACKLYSD------ 515 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~------ 515 (574)
.-+.++..|.+--+ -+..++......-......+ +.+..+.+ .+.+ ++--..+++.+++..+.
T Consensus 748 ~~~~~l~~f~~~~~-----~~~lv~~kwf~~qa~~~~~~-~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~ 821 (891)
T 3b34_A 748 CRDALMQEYDDKWH-----QNGLVMDKWFILQATSPAAN-VLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAE 821 (891)
T ss_dssp THHHHHHHHHHHHT-----TCHHHHHHHHHHHHTCCCTT-HHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCT
T ss_pred hHHHHHHHHHHHhc-----cCcHHHHHHHHHHhCCCCcc-HHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCC
Confidence 44455554443332 35555554444444333322 33333333 2222 45566777777654221
Q ss_pred HHHHHH-HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 516 IELGEL-VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 516 ~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
-..+.+ +.+.++++++.||.+-..|+..+.+-.++++.++.+
T Consensus 822 ~g~gy~~~~~~~~~l~~~np~~a~r~~~~~~~~~~~~~~~~~~ 864 (891)
T 3b34_A 822 DGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEK 864 (891)
T ss_dssp TSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCcCHHHHHHHHHHHhhhhhcCHHHHHH
Confidence 123344 456668889999999999999999999988776643
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.96 E-value=3.1e+02 Score=21.65 Aligned_cols=51 Identities=8% Similarity=-0.041 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HhccCcHHHHHHHHHHhHh
Q 046956 410 HGHGRQAVSLFDRMLSEGLTP--DEVAFTIVLT-A-----CSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 460 (574)
.|++-+|.++++..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 477777777777776543334 3335555555 2 2345777777777777655
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.90 E-value=5.1e+02 Score=24.07 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=44.0
Q ss_pred HHHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCc---chHHHHHHHHHccCChHHHH
Q 046956 180 LYGKRKEISCARKVFDEMPER---NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSN---VSWNALIGGLVKIGDLRSAR 253 (574)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 253 (574)
..+..|+.+.+..+++.-... +...++ .+...+..|+.+-+.-+++.-..++. ... +.+...+..|+.+-..
T Consensus 119 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~ 196 (437)
T 1n11_A 119 IAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAELLLERDAHPNAAGKNGL-TPLHVAVHHNNLDIVK 196 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCC-CHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHH
Confidence 344556666666665543221 111111 22333455665555555443322211 111 1223334455555555
Q ss_pred HHHhcCCCC---chhHHHHHHHHHHhcCChHHHHHHHhh
Q 046956 254 QLFDEMPER---NVVSYTTMIDGYAKVGDMTSARSLFEA 289 (574)
Q Consensus 254 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (574)
.+++.-..+ +...+ +.+...+..|+.+-+..+++.
T Consensus 197 ~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 197 LLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHGGGTCCSCCCCTTCC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhCCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 555422111 11111 123334455666655555554
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.75 E-value=4.6e+02 Score=23.55 Aligned_cols=86 Identities=9% Similarity=-0.082 Sum_probs=38.1
Q ss_pred HHHhcCCChHHHHHHhhccCCCC---hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHH
Q 046956 78 LCHSLATPLSYSTAVFNRIVNPN---TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 154 (574)
...+..|+.+....+++....++ ..-++. +...+..|+.+-+..+ .+.|..++...-...+...+..|+.+-
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHHHHcCCHHH
Confidence 44455666666666666543222 222222 3333444554333333 333333333111223333345566666
Q ss_pred HHHHHHHHHHhCCC
Q 046956 155 GTAIHAAVIRWGVD 168 (574)
Q Consensus 155 a~~~~~~~~~~g~~ 168 (574)
+..+++.....|..
T Consensus 100 v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 100 VVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHhccccCCC
Confidence 65555554444433
Done!