BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046957
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 323 bits (828), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 206/309 (66%), Gaps = 2/309 (0%)
Query: 1 MEKKSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFN-DPNKQQKLQSLSIAGVTF 59
M +S++L+IGATG +G H+AK S + HPTF L+R+S+ + + K Q L+S +G
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 LKGSLEDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDK 119
+ GS++D SL+EAVK VDVVI ++ S Q+ Q +I+ IKE G +KRF PSEFG D D
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 120 SQISDLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIF 179
+ + + K+++RR IEA GIPYTY+ N F Y L SL Q GL PPRDKV I
Sbjct: 121 VHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVIL 180
Query: 180 GDGNTKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLE 239
GDGN + VFV D+ FTI A+DDPRTLNK LYLR P N +NELV WE KI K LE
Sbjct: 181 GDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLE 240
Query: 240 KINVSEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTT 299
K V EEE+LK I DTP+P N+ + +S FVKGD T F+I P +GVE +QLYP +KYTT
Sbjct: 241 KAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGP-AGVEASQLYPDVKYTT 299
Query: 300 ISEHLDNLL 308
+ E+L N +
Sbjct: 300 VDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 130/307 (42%), Positives = 194/307 (63%), Gaps = 3/307 (0%)
Query: 4 KSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDS--SFNDPNKQQKLQSLSIAGVTFLK 61
++K+LI+G TG +G H+ S + +PT+AL+R + + N K++ + + GV L+
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 62 GSLEDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQ 121
G + D +L++A+KQVD+VIC+ + DQ +I+ IKEAG +K+F PSEFG D D+
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHD 121
Query: 122 ISDLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGD 181
+ + K+ IRR+IEA G+PYTY+CC+ F Y L +L Q PPRDKV I GD
Sbjct: 122 AVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGD 181
Query: 182 GNTKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKI 241
GN KG +V DV FTI A +DP TLNK +++R P N NE++ WE KIGK LEK
Sbjct: 182 GNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKT 241
Query: 242 NVSEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTIS 301
VSEE++LK I+++ +P N + +S +KGD Y +I+P+ +E ++ YP + YTT
Sbjct: 242 YVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAVY-EIDPAKDIEASEAYPDVTYTTAD 300
Query: 302 EHLDNLL 308
E+L+ +
Sbjct: 301 EYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 191/311 (61%), Gaps = 7/311 (2%)
Query: 1 MEKKSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFL 60
M+KKS+VLI+G TG +G + S HPT+ L R ++ +K Q L G +
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 KGSLEDEGSLMEAVKQVDVVICSIP----SKQVLDQKLLIRVIKEAGCIKRFIPSEFGAD 116
+ SL+D L++A+KQVDVVI ++ S +L+Q L+ IKEAG IKRF+PSEFG D
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD 120
Query: 117 PDKSQISDLDNNF-YSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQ-PGLKTPPRD 174
PD + + + + K ++RR IEA IPYTY+ N+F Y SL Q G PPRD
Sbjct: 121 PDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRD 180
Query: 175 KVTIFGDGNTKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKI 234
KV I+GDGN KG++V+ DV +TI ++DDP+TLNK +Y+RPP N+ E+++ WE
Sbjct: 181 KVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLS 240
Query: 235 GKKLEKINVSEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPH 294
+ L+KI +S ++ L +KD Y E + +Y F +GD F+I P++ +E T+LYP
Sbjct: 241 EQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPNA-IEATKLYPE 299
Query: 295 LKYTTISEHLD 305
+KY T+ +L+
Sbjct: 300 VKYVTMDSYLE 310
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 170/301 (56%), Gaps = 3/301 (0%)
Query: 4 KSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGS 63
K +VLI GATG +G +A S + PT+ L R P+K + ++L G + G
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGP-RSPSKAKIFKALEDKGAIIVYGL 68
Query: 64 LEDEGSLMEAVKQ--VDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQ 121
+ ++ ++ + +K+ +D+V+ ++ + +LDQ L++ +K G IKRF+PSEFG D +++
Sbjct: 69 INEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRAD 128
Query: 122 ISDLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGD 181
+ N Y K +R+L+E GIP+TYICCN S+ + + P PP D I+GD
Sbjct: 129 PVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGD 188
Query: 182 GNTKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKI 241
GN K FV D+ FT+ +DD RTLNK ++ RP N +NEL WE KIG+ L ++
Sbjct: 189 GNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRV 248
Query: 242 NVSEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTIS 301
V+E++LL + P+++ F + F+KG F I+ VE T LYP + T+
Sbjct: 249 TVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRTVE 308
Query: 302 E 302
E
Sbjct: 309 E 309
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 206 bits (525), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 172/302 (56%), Gaps = 8/302 (2%)
Query: 4 KSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGS 63
KSK+LI G TG +G H+ K S + HPT+ R +S +K L G +KG
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62
Query: 64 LEDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQIS 123
L++ L+E +K+VDVVI ++ Q+LDQ ++ IK AG IKRF+PS+FG + D+
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 122
Query: 124 DLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGDGN 183
RK IRR IE IPYTY+ N F SY + L++P P+D++T++G G
Sbjct: 123 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 179
Query: 184 TKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINV 243
K D+ +TI DPR LN+V+ RP N+ EL+ WE KIGKK +KI+V
Sbjct: 180 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 239
Query: 244 SEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTISEH 303
EEE++ K+ P PEN+ + ++ F+ G +D + + VE + LYP LK+TTI E
Sbjct: 240 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPELKFTTIDEL 298
Query: 304 LD 305
LD
Sbjct: 299 LD 300
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 172/302 (56%), Gaps = 8/302 (2%)
Query: 4 KSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGS 63
KSK+LI G TG +G H+ K S + HPT+ R +S +K L G +KG
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 LEDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQIS 123
L++ L+E +K+VDVVI ++ Q+LDQ ++ IK AG IKRF+PS+FG + D+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 DLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGDGN 183
RK IRR IE IPYTY+ N F SY + L++P P+D++T++G G
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 184 TKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINV 243
K D+ +TI DPR LN+V+ RP N+ EL+ WE KIGKK +KI+V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 244 SEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTISEH 303
EEE++ K+ P PEN+ + ++ F+ G +D + + VE + LYP LK+TTI E
Sbjct: 244 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPELKFTTIDEL 302
Query: 304 LD 305
LD
Sbjct: 303 LD 304
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 171/302 (56%), Gaps = 8/302 (2%)
Query: 4 KSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGS 63
KSK+LI G TG +G H+ K S + HPT+ R +S +K L G +KG
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 LEDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQIS 123
L++ L+E +K+VDVVI ++ Q LDQ ++ IK AG IKRF+PS+FG + D+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 DLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGDGN 183
RK IRR IE IPYTY+ N F SY + L++P P+D++T++G G
Sbjct: 127 PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 184 TKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINV 243
K D+ +TI DPR LN+V+ RP N+ EL+ WE KIGKK +KI+V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 244 SEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTISEH 303
EEE++ K+ P PEN+ + ++ F+ G +D + + VE + LYP LK+TTI E
Sbjct: 244 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPELKFTTIDEL 302
Query: 304 LD 305
LD
Sbjct: 303 LD 304
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 172/302 (56%), Gaps = 8/302 (2%)
Query: 4 KSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGS 63
KSK+LI G TG +G H+ K S + HPT+ R +S +K L G +KG
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 LEDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQIS 123
L++ L+E +K+VDVVI ++ Q+LDQ ++ IK AG IKRF+PS+FG + D+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 DLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGDGN 183
R+ IRR IE IPYTY+ N F SY + L++P P+D++T++G G
Sbjct: 127 PPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGTGE 183
Query: 184 TKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINV 243
K D+ +TI DPR LN+V+ RP N+ EL+ WE KIGKK +KI+V
Sbjct: 184 AKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHV 243
Query: 244 SEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTISEH 303
EEE++ K+ P PEN+ + ++ F+ G +D + + VE + LYP LK+TTI E
Sbjct: 244 PEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFK-ENDVEASTLYPELKFTTIDEL 302
Query: 304 LD 305
LD
Sbjct: 303 LD 304
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 171/301 (56%), Gaps = 2/301 (0%)
Query: 6 KVLIIGATGRLGYHLAKFSTEYCHPTFALIRD-SSFNDPNKQQKLQSLSIAGVTFLKGSL 64
K++I G TG +G + + S + HPTF R + + P+ Q + GVT ++G +
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 65 EDEGSLMEAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQISD 124
E+ ++ +KQVD+VI ++P + Q +I IK AG IKRF+PS+FG + D+ +
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLP 125
Query: 125 LDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIFGDGNT 184
+ +K IRR IEA +PYTY+ N F +Y + L+ P D + I+G G T
Sbjct: 126 PFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGET 185
Query: 185 KGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVS 244
K V D+A +TI DPR N+++ RPP N+ NEL+ WE+K G +K+++
Sbjct: 186 KFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245
Query: 245 EEELLKKIKDTPYPENLEMVFIYSTFVKGDHTYFDIEPSSGVEGTQLYPHLKYTTISEHL 304
+E+L++ ++ P P+N+ + ++S FVKGD +++ +E + LYP L++T+I L
Sbjct: 246 DEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMR-KDDIEASNLYPELEFTSIDGLL 304
Query: 305 D 305
D
Sbjct: 305 D 305
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 32/263 (12%)
Query: 7 VLIIGATGRLGYHLAK--FSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGSL 64
+ I GATG+LG+++ + T A++R+ + K Q+L+ G+T +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPA--------KAQALAAQGITVRQADY 53
Query: 65 EDEGSLMEAVKQVD---VVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDKSQ 121
DE +L A++ V+ ++ S ++ + +I K AG +FI D S
Sbjct: 54 GDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGV--KFIAYTSLLHADTSP 111
Query: 122 ISDLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFM-SYL--LPSLVQPGLKTPPRDKVTI 178
+ D + E +++ GI YT + + +YL P+ ++ G V I
Sbjct: 112 LGLADEHI-----ETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHG--------VFI 158
Query: 179 FGDGNTKGVFVNSVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKL 238
G+ K D AA + + KV Y + + +L + GK++
Sbjct: 159 GAAGDGKIASATRADYAAAAARVISEAGHEGKV-YELAGDSAWTLTQLAAELTKQSGKQV 217
Query: 239 EKINVSEEELLKKIKDTPYPENL 261
N+SE + +K P+ L
Sbjct: 218 TYQNLSEADFAAALKSVGLPDGL 240
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 13/159 (8%)
Query: 2 EKKSKVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLK 61
++K + ++GATGR G L + + H A + + Q +I VT +
Sbjct: 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-----AIPNVTLFQ 57
Query: 62 GSLEDEGSLM----EAVKQVDVVICSIPSKQVLDQKLLIRVIKEAGCIKRFIPSEFGADP 117
G L + LM E + S ++ K L K AG I+ +I + + P
Sbjct: 58 GPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYI---YSSMP 114
Query: 118 DKSQISDLDN-NFYSRKSEIRRLIEAGGIPYTYICCNLF 155
D S ++ K + + G+P T++ ++
Sbjct: 115 DHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIY 153
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 178 IFGDGNTK----GVFVNSVDVAAF------TISALDDPRTLNKVLYLRPPGNVCCMNELV 227
IF + TK G+ VN + + IS+ D P N VL L N + + +
Sbjct: 273 IFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAI 332
Query: 228 EAWESKIGKKLEKINVSEEELLKKIKDTPYPENLEMVFIYSTFVKGDHTY 277
+E ++G+K++ S +ELL +D+ E +E VFI S+F DH +
Sbjct: 333 AHYEQQMGQKVQLPTESLQELLDLHRDSER-EAIE-VFIRSSFKDVDHLF 380
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 7 VLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSL-----SIAGVTFLK 61
V + GA+G +G L E + A +RD P +K++ L + +T K
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRD-----PTNVKKVKHLLDLPKAETHLTLWK 62
Query: 62 GSLEDEGSLMEAVK 75
L DEGS EA+K
Sbjct: 63 ADLADEGSFDEAIK 76
>pdb|1HNN|A Chain A, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1HNN|B Chain B, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1N7I|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7I|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7J|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
pdb|1N7J|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
Length = 282
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 191 SVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVSEEELLK 250
S D+A+F ALD TL LRP G++ + L E+W +L + VSEEE+ +
Sbjct: 188 SPDLASFQ-RALDHITTL-----LRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE 241
Query: 251 KIKDTPY 257
+ + Y
Sbjct: 242 ALVRSGY 248
>pdb|3HCA|A Chain A, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCA|B Chain B, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 191 SVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVSEEELLK 250
S D+A+F ALD TL LRP G++ + L E+W +L + VSEEE+ +
Sbjct: 188 SPDLASFQ-RALDHITTL-----LRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE 241
Query: 251 KIKDTPY 257
+ + Y
Sbjct: 242 ALVRSGY 248
>pdb|2OBF|A Chain A, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2OBF|B Chain B, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2ONZ|A Chain A, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2ONZ|B Chain B, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2OPB|A Chain A, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
pdb|2OPB|B Chain B, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
Length = 289
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 191 SVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVSEEELLK 250
S D+A+F ALD TL LRP G++ + L E+W +L + VSEEE+ +
Sbjct: 188 SPDLASFQ-RALDHITTL-----LRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE 241
Query: 251 KIKDTPY 257
+ + Y
Sbjct: 242 ALVRSGY 248
>pdb|3HCE|A Chain A, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCE|B Chain B, Crystal Structure Of E185d Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 191 SVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVSEEELLK 250
S D+A+F ALD TL LRP G++ + L E+W +L + VSEEE+ +
Sbjct: 188 SPDLASFQ-RALDHITTL-----LRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE 241
Query: 251 KIKDTPY 257
+ + Y
Sbjct: 242 ALVRSGY 248
>pdb|1YZ3|A Chain A, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|1YZ3|B Chain B, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|2AN3|A Chain A, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN3|B Chain B, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN4|A Chain A, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN4|B Chain B, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN5|A Chain A, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2AN5|B Chain B, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2G8N|A Chain A, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G8N|B Chain B, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G70|A Chain A, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G70|B Chain B, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G71|A Chain A, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G71|B Chain B, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G72|A Chain A, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2G72|B Chain B, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2ONY|A Chain A, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|2ONY|B Chain B, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|3HCB|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCB|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCC|A Chain A, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCC|B Chain B, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCD|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCD|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCF|A Chain A, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3HCF|B Chain B, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3KPJ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPJ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPU|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPU|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KPY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KQM|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQM|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQO|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQO|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQP|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQP|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQQ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQQ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQS|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQS|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQT|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQT|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KQY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KR0|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR0|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR1|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR1|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|4DM3|A Chain A, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
pdb|4DM3|B Chain B, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
Length = 289
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 191 SVDVAAFTISALDDPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVSEEELLK 250
S D+A+F ALD TL LRP G++ + L E+W +L + VSEEE+ +
Sbjct: 188 SPDLASFQ-RALDHITTL-----LRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVRE 241
Query: 251 KIKDTPY 257
+ + Y
Sbjct: 242 ALVRSGY 248
>pdb|3E48|A Chain A, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
pdb|3E48|B Chain B, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
Length = 289
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 25/211 (11%)
Query: 6 KVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSIAGVTFLKGSLE 65
+ + GATG LG H+ + F + + P+ + +S+ + +
Sbjct: 2 NIXLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRG--KVSVRQLDYF----- 54
Query: 66 DEGSLMEAVKQVDVVICSIPS------KQVLDQKLLIRVIKEAGCIKRFIPSEFGADPDK 119
++ S +EA K D V+ IPS K++ + + L+ K++G + I + AD
Sbjct: 55 NQESXVEAFKGXDTVVF-IPSIIHPSFKRIPEVENLVYAAKQSG-VAHIIFIGYYADQHN 112
Query: 120 SQISDLDNNFYSRKSEIRRLIEAGGIPYTYICCNLFMSYLLPSLVQPGLKTPPRDKVTIF 179
+ + ++ S RL+ GI YTY+ + L P L P L + I+
Sbjct: 113 NPFHX--SPYFGYAS---RLLSTSGIDYTYVRXAXYXDPLKPYL--PELXNXHK---LIY 162
Query: 180 GDGNTKGVFVNSVDVAAFTISALDDPRTLNK 210
G+ + ++ D+A I+ + +P T K
Sbjct: 163 PAGDGRINYITRNDIARGVIAIIKNPDTWGK 193
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 6 KVLIIGATGRLGYHLAKFSTEYCHPTFALIRDSSFNDPNKQQKLQSLSI-AGVTFLKGSL 64
K+L+ G G +G + ++ E HP + +I + L+ L TF+KG +
Sbjct: 5 KLLVTGGMGFIGSNFIRYILE-KHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDV 63
Query: 65 EDEGSLMEAVKQVDVVI 81
D + E V++VD V+
Sbjct: 64 ADYELVKELVRKVDGVV 80
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 17/164 (10%)
Query: 152 CNLFMSYLLPSLVQPGLKTPPRDKVTIFGDGN--------TKGVFVNSVDVAAFTISALD 203
CN+ + L+ S VQP T D+ + + N TK + D + +
Sbjct: 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE 144
Query: 204 DPRTLNKVLYLRPPGNVCCMNELVEAWESKIGKKLEKINVSEEELLKKIKDTPYPE-NLE 262
D R + +YL + + +++ ++ K + V + LL I PE L
Sbjct: 145 DYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAIS----PELGLR 200
Query: 263 MVFIYSTFVKGDHTYFDIE--PSSG--VEGTQLYPHLKYTTISE 302
I +G HT +E +SG V T + L++T I E
Sbjct: 201 TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,459,211
Number of Sequences: 62578
Number of extensions: 397055
Number of successful extensions: 1292
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 34
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)