BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046958
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 206/353 (58%), Gaps = 28/353 (7%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L DTW++W++TGG G +HVTDV+NASRTMLM+L TL W + +GIP + P I
Sbjct: 159 LFGNTDTWVLWNMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDI 218
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
S+SE+ G + G+PI+G LG+Q AA GQAC + G+AK+TYGTG F+ LNTG E
Sbjct: 219 RSSSEVYGHGRPRGLVPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTE 278
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRV 242
V SK+GLL+T+ +K+G AP YALE D+LG+ +A ++E LA +V
Sbjct: 279 KVMSKNGLLTTVCYKIG-DAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKV 337
Query: 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
GG YFV AF+GL AP+WR DAR +G+TR+ ++ H ARA LE+ F ++V+D+
Sbjct: 338 QDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMN 397
Query: 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXXXX 362
D+ GV LRVDGG N LLMQ QAD LG V+RP E+T
Sbjct: 398 ADS---GVDLTE-----LRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAG 449
Query: 363 XXIGVFK-EEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLAD 414
+G +K E+++ + K + P + R++ + +AV +T D
Sbjct: 450 IAVGFWKGEQDVIDNWAEDK---RWSPSMESGERERLYRNWKKAVTKTMEWVD 499
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 199/351 (56%), Gaps = 35/351 (9%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T+DTWLIW +T G +HVTD +NASRTML N+ TLDWD LE L IP E+ P++
Sbjct: 161 LFGTVDTWLIWKMT---QGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV 217
Query: 138 VSNSEIIGKI---GKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
+SE+ G+ GKG T IPISG G+Q AA+ GQ C K+G AK+TYGTG F+ +NT
Sbjct: 218 RRSSEVYGQTNIGGKGG--TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT 275
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE+ VKS++GLL+T+A GP NYALE D + +I++A + E A
Sbjct: 276 GEKAVKSENGLLTTIA--CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA 333
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V +T G+Y V AF GL AP+W AR G+TR + H RA LES+ + +DVL+
Sbjct: 334 TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ Q D+ G+ A LRVDGGA NN LMQ Q+D+LG+ V RP E T
Sbjct: 394 AMQADS---GIRLHA-----LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAY 445
Query: 360 XXXXXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
+G ++ + E+ F+P + R + +AV+R
Sbjct: 446 LAGLAVGFWQNLDEL--QEKAVIEREFRPGIETTERNYRYAGWKKAVKRAM 494
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 244 bits (622), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 199/351 (56%), Gaps = 35/351 (9%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T+DTWLIW +T G +HVTD +NASRTML N+ TLDWD LE L IP E+ P++
Sbjct: 161 LFGTVDTWLIWKMT---QGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV 217
Query: 138 VSNSEIIGKI---GKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
+SE+ G+ GKG T IPISG G+Q AA+ GQ C K+G AK+TYGTG F+ +NT
Sbjct: 218 RRSSEVYGQTNIGGKGG--TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT 275
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE+ VKS++GLL+T+A GP NYALE D + +I++A + E A
Sbjct: 276 GEKAVKSENGLLTTIA--CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA 333
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V +T G+Y V AF GL AP+W AR G+TR + H RA LES+ + +DVL+
Sbjct: 334 TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ Q D+ G+ A LRVDGGA NN LMQ Q+D+LG+ V RP E T
Sbjct: 394 AMQADS---GIRLHA-----LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAY 445
Query: 360 XXXXXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
+G ++ + E+ F+P + R + +AV+R
Sbjct: 446 LAGLAVGFWQNLDEL--QEKAVIEREFRPGIETTERNYRYAGWKKAVKRAM 494
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 244 bits (622), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 199/351 (56%), Gaps = 35/351 (9%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T+DTWLIW +T G +HVTD +NASRTML N+ TLDWD LE L IP E+ P++
Sbjct: 161 LFGTVDTWLIWKMT---QGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV 217
Query: 138 VSNSEIIGKI---GKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
+SE+ G+ GKG T IPISG G+Q AA+ GQ C K+G AK+TYGTG F+ +NT
Sbjct: 218 RRSSEVYGQTNIDGKGG--TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT 275
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE+ VKS++GLL+T+A GP NYALE D + +I++A + E A
Sbjct: 276 GEKAVKSENGLLTTIA--CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA 333
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V +T G+Y V AF GL AP+W AR G+TR + H RA LES+ + +DVL+
Sbjct: 334 TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ Q D+ G+ A LRVDGGA NN LMQ Q+D+LG+ V RP E T
Sbjct: 394 AMQADS---GIRLHA-----LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAY 445
Query: 360 XXXXXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
+G ++ + E+ F+P + R + +AV+R
Sbjct: 446 LAGLAVGFWQNLDEL--QEKAVIEREFRPGIETTERNYRYAGWKKAVKRAM 494
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 244 bits (622), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 199/351 (56%), Gaps = 35/351 (9%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L T+DTWLIW +T G +HVTD +NASRTML N+ TLDWD LE L IP E+ P++
Sbjct: 161 LFGTVDTWLIWKMT---QGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV 217
Query: 138 VSNSEIIGKI---GKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNT 193
+SE+ G+ GKG T IPISG G+Q AA+ GQ C K+G AK+TYGTG F+ +NT
Sbjct: 218 RRSSEVYGQTNIGGKGG--TRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT 275
Query: 194 GEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELA 239
GE+ VKS++GLL+T+A GP NYALE D + +I++A + E A
Sbjct: 276 GEKAVKSENGLLTTIA--CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA 333
Query: 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
+V +T G+Y V AF GL AP+W AR G+TR + H RA LES+ + +DVL+
Sbjct: 334 TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXX 359
+ Q D+ G+ A LRVDGGA NN LMQ Q+D+LG+ V RP E T
Sbjct: 394 AMQADS---GIRLHA-----LRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAY 445
Query: 360 XXXXXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
+G ++ + E+ F+P + R + +AV+R
Sbjct: 446 LAGLAVGFWQNLDEL--QEKAVIEREFRPGIETTERNYRYAGWKKAVKRAM 494
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/345 (43%), Positives = 197/345 (57%), Gaps = 36/345 (10%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
T+DTWLIW+LTGG +H TD +NASRT+L NL TL WD LE LGIPA + P++ +
Sbjct: 162 TVDTWLIWNLTGG---KVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPS 218
Query: 141 SEIIGKIGKGCP-ITG--IPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
G G+ P + G +PI G LG+Q AA+ GQA GE K TYGTGAF+ LNTG+
Sbjct: 219 D---GDFGETLPELLGAPVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKR 275
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALEDSL-------------GIISNASEIEELALRVN 243
V S+ GLL+T+A+ LG +A YALE SL G+I ++E+E LA V
Sbjct: 276 PVLSEKGLLATVAWSLGGRA--TYALEGSLFVAGAAVGWLKEVGLIRESAEVEALAASVE 333
Query: 244 STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303
TG +YFV AF GL AP+W AR +G+TR TS+AH ARA LE + F V+DV+ + ++
Sbjct: 334 DTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEE 393
Query: 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXXXXX 363
+A GV VL+ DGG N L ++IQADLLG PV P E+T
Sbjct: 394 EA---GVRLK-----VLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGV 445
Query: 364 XIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVER 408
G E++ + R + + F P + E R+ AVER
Sbjct: 446 GAGALSPEDV---AGRFREAERFLPTMPEGRREALYRRWREAVER 487
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 195/348 (56%), Gaps = 31/348 (8%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TIDTWL+W L+G H+TD SNASRT+ N+ L+WD LE L +P P++
Sbjct: 163 LFGTIDTWLVWKLSGKA---AHITDYSNASRTLXFNIHDLEWDDELLELLTVPKNXLPEV 219
Query: 138 VSNSEIIGK-IGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGE 195
++SE+ GK I +PI+G G+Q AA+ GQAC ++G+ K+TYGTG F NTG+
Sbjct: 220 KASSEVYGKTIDYHFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFXLXNTGD 279
Query: 196 EVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALR 241
+ VKS+ GLL+T+A+ G NYALE D L I++A + E A R
Sbjct: 280 KAVKSESGLLTTIAY--GIDGKVNYALEGSIFVSGSAIQWLRDGLRXINSAPQSESYATR 337
Query: 242 VNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301
V+ST G+Y V AF GL P+W +AR G+TR T K HF RA LES+C+ +DV ++
Sbjct: 338 VDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVXEAX 397
Query: 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXXX 361
KD+ G+ D + LRVDGGA NN + Q QAD++ + V RP E+T
Sbjct: 398 SKDS---GI--DVQS---LRVDGGAVKNNFIXQFQADIVNTSVERPEIQETTALGAAFLA 449
Query: 362 XXXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
+G ++ ++ A + K F P +E R+K +AVE T
Sbjct: 450 GLAVGFWESKDDIAKN--WKLEEKFDPKXDEGEREKLYRGWKKAVEAT 495
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 198/351 (56%), Gaps = 35/351 (9%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
+ T+DT+LI+ LTG HVTD SNASRTML N+K LDWD LE IP + P++
Sbjct: 158 MFGTVDTFLIYRLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEV 212
Query: 138 VSNSEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEE 196
+SE+ G K IP+SG G+Q AA+ GQA + G K+TYGTG+FI +NT +
Sbjct: 213 RESSEVYGYTKKELLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKM 272
Query: 197 VVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRV 242
V+ S + LL+T+A+ L + +YALE D + II +ASE EELA ++
Sbjct: 273 VLYSDN-LLTTIAWGLNGR--VSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKL 329
Query: 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQ 302
S G+YFV AF GL AP+W AR + IGITR T + H ARA LE++ +L +DV+D +
Sbjct: 330 ESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEME 389
Query: 303 KDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXXXX 362
K IK+ LRVDGGAT N+ LMQ QAD+L V+RP E+T
Sbjct: 390 KLV----QIKE------LRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAG 439
Query: 363 XXIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTFNLA 413
+ + + A E K F+P ++E+ R++ + AV+R A
Sbjct: 440 LAVDYWADTREIA--ELWKAERIFEPKMDEKTRERLYKGWKEAVKRAMGWA 488
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 201/355 (56%), Gaps = 37/355 (10%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 162 LFGTIDSWLVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 218
Query: 138 VSNSEIIGKIGKGCPITG--IPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTG 194
SNSE+ G + G +PI+G G+Q AA+ GQ A +KG K+TYGTGAFI +NTG
Sbjct: 219 KSNSEVYGHT-RSYEFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTG 277
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
EE S + LL+T+ + + K YALE D L +I + + EELA
Sbjct: 278 EEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 335
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
+ +Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+
Sbjct: 336 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT 395
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+KD+ G+ P +L+VDGGA N+LLMQ QAD+L V R A++E+T
Sbjct: 396 MKKDS---GI---DIP--LLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 447
Query: 361 XXXXIGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAES--QCRAVERTFNL 412
+G +K+ +E+ + +E + F P + E R E Q A +TF
Sbjct: 448 AGLAVGFWKDLDELKSMAEEGQ---MFTPEMPAEERDNLYEGWKQAVAATQTFKF 499
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 201/355 (56%), Gaps = 37/355 (10%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 161 LFGTIDSWLVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 217
Query: 138 VSNSEIIGKIGKGCPITG--IPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTG 194
SNSE+ G + G +PI+G G+Q AA+ GQ A +KG K+TYGTGAFI +NTG
Sbjct: 218 KSNSEVYGHT-RSYAFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTG 276
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
EE S + LL+T+ + + K YALE D L +I + + EELA
Sbjct: 277 EEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 334
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
+ +Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+
Sbjct: 335 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT 394
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+KD+ G+ P +L+VDGGA N+LLMQ QAD+L V R A++E+T
Sbjct: 395 MKKDS---GI---DIP--LLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 446
Query: 361 XXXXIGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAES--QCRAVERTFNL 412
+G +K+ +E+ + +E + F P + E R E Q A +TF
Sbjct: 447 AGLAVGFWKDLDELKSMAEEGQ---MFTPEMPAEERDNLYEGWKQAVAATQTFKF 498
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/350 (39%), Positives = 200/350 (57%), Gaps = 35/350 (10%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 161 LFGTIDSWLVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 217
Query: 138 VSNSEIIGKIGKGCPITG--IPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTG 194
SNSE+ G + G +PI+G G+Q AA+ GQ A +KG K+TYGTGAFI +NTG
Sbjct: 218 KSNSEVYGHT-RSYHFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTG 276
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
EE S + LL+T+ + + K YALE D L +I + + EELA
Sbjct: 277 EEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 334
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
+ +Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+
Sbjct: 335 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT 394
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+KD+ G+ P +L+VDGGA N+LLMQ QAD+L V R A++E+T
Sbjct: 395 MKKDS---GI---DIP--LLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 446
Query: 361 XXXXIGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERT 409
+G +K+ +E+ + +E + F P + E R E +AV T
Sbjct: 447 AGLAVGFWKDLDELKSMAEEGQ---MFTPEMPAEERDNLYEGWKQAVAAT 493
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 201/355 (56%), Gaps = 37/355 (10%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 162 LFGTIDSWLVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 218
Query: 138 VSNSEIIGKIGKGCPITG--IPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTG 194
SNSE+ G + G +PI+G G+Q AA+ GQ A +KG K+TYGTGAFI +NTG
Sbjct: 219 KSNSEVYGHT-RSYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTG 277
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
EE S + LL+T+ + + K YALE D L +I + + EELA
Sbjct: 278 EEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 335
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
+ +Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+
Sbjct: 336 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT 395
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+KD+ G+ P +L+VDGGA N+LLMQ QAD+L V R A++E+T
Sbjct: 396 MKKDS---GI---DIP--LLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 447
Query: 361 XXXXIGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAES--QCRAVERTFNL 412
+G +K+ +E+ + +E + F P + E R E Q A +TF
Sbjct: 448 AGLAVGFWKDLDELKSMAEEGQ---MFTPEMPAEERDNLYEGWKQAVAATQTFKF 499
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 201/355 (56%), Gaps = 37/355 (10%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 174 LFGTIDSWLVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 230
Query: 138 VSNSEIIGKIGKGCPITG--IPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTG 194
SNSE+ G + G +PI+G G+Q AA+ GQ A +KG K+TYGTGAFI +NTG
Sbjct: 231 KSNSEVYGHT-RSYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTG 289
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
EE S + LL+T+ + + K YALE D L +I + + EELA
Sbjct: 290 EEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 347
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
+ +Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+
Sbjct: 348 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT 407
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+KD+ G+ P +L+VDGGA N+LLMQ QAD+L V R A++E+T
Sbjct: 408 MKKDS---GI---DIP--LLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 459
Query: 361 XXXXIGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAES--QCRAVERTFNL 412
+G +K+ +E+ + +E + F P + E R E Q A +TF
Sbjct: 460 AGLAVGFWKDLDELKSMAEEGQ---MFTPEMPAEERDNLYEGWKQAVAATQTFKF 511
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 199/347 (57%), Gaps = 35/347 (10%)
Query: 78 LMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKI 137
L TID+WL+W LT +G +HVTD SNASRTML N+ L+WD+ L+ L IP+ + P++
Sbjct: 157 LFGTIDSWLVWKLT---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEV 213
Query: 138 VSNSEIIGKIGKGCPITG--IPISGCLGNQHAAMLGQ-ACKKGEAKSTYGTGAFIRLNTG 194
SNSE+ G + G +PI+G G+Q AA+ GQ A +KG K+TYGTGAFI +NTG
Sbjct: 214 KSNSEVYGHT-RSYHFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTG 272
Query: 195 EEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELAL 240
EE S + LL+T+ + + K YALE D L +I + + EELA
Sbjct: 273 EEPQLSDNDLLTTIGYGINGK--VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAA 330
Query: 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300
+ +Y V AF GL AP+W +AR G+TR T+K F RA L+++ + KDV+D+
Sbjct: 331 KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDT 390
Query: 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXX 360
+KD+ G+ P +L+VDGGA N+LLMQ QAD+L V R A++E+T
Sbjct: 391 MKKDS---GI---DIP--LLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 442
Query: 361 XXXXIGVFKE-EEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAV 406
+G +K+ +E+ + +E + F P + E R E +AV
Sbjct: 443 AGLAVGFWKDLDELKSMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 486
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 179/345 (51%), Gaps = 28/345 (8%)
Query: 81 TIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSN 140
TIDT+LIW LTGG + TD +NASRT+L N+ WD E L +P E P++
Sbjct: 186 TIDTFLIWRLTGG---ECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEXLPEVKDC 242
Query: 141 SEIIGKIGKGCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVK 199
+ G IPI G G+Q AA +GQAC K G KSTYGTG F LNTG++ V+
Sbjct: 243 AADFGVTDPSLFGAAIPILGVAGDQQAATIGQACFKPGXLKSTYGTGCFALLNTGKDXVR 302
Query: 200 SKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASEIEELALRVNST 245
SK+ LL+T+A++L T YALE D L +I A + LA + +
Sbjct: 303 SKNRLLTTIAYRL--DGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPS 360
Query: 246 GGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305
+Y V AF GL AP W DAR G TR T A FARA LE++C+ +D+L++ KD
Sbjct: 361 QEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFARAALEAVCYQTRDLLEAXHKDW 420
Query: 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTXXXXXXXXXXXI 365
G + VLRVDGG ++ Q +DLL +PV RP +E+T
Sbjct: 421 RRNG------NDTVLRVDGGXVASDWTXQRLSDLLDAPVDRPVILETTALGVAWLAGSRA 474
Query: 366 GVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCRAVERTF 410
GV+ +E FA S F+P +E RK K + AV+RT
Sbjct: 475 GVWPNQEAFAKS--WARDRRFEPHXDEATRKVKLKGWRSAVKRTL 517
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 161/280 (57%), Gaps = 28/280 (10%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSN 140
I+TWLI++LT G TDV+NASRT+LM++ TL WD+ + I + P+I SN
Sbjct: 171 INTWLIFNLTKGN----CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSN 226
Query: 141 SEIIGKI-GKGCP-ITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEV 197
G + + P IPI+GC+G+Q +A +GQA +GEAK TYGTG F+ +NTGE+V
Sbjct: 227 CSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKV 286
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALEDSLG-------------IISNASEIEELALRVNS 244
V S GL++T+ +K YALE S+G +I + SE ++ + +
Sbjct: 287 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCEN 346
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
T G+ FV AF+GL AP WR DAR+ G+T T ++H RA+LE + F + +++DS D
Sbjct: 347 TTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSD 406
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPV 344
G+ + VLR DGG T N MQ +D++ + +
Sbjct: 407 M---GI----EMLHVLRCDGGMTKNKPFMQFNSDIINTKI 439
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 161/280 (57%), Gaps = 28/280 (10%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSN 140
I+TWLI++LT G TDV+NASRT+LM++ TL WD+ + I + P+I SN
Sbjct: 167 INTWLIFNLTKGN----CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSN 222
Query: 141 SEIIGKI-GKGCP-ITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEV 197
G + + P IPI+GC+G+Q +A +GQA +GEAK TYGTG F+ +NTGE+V
Sbjct: 223 CSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKV 282
Query: 198 VKSKHGLLSTLAFKLGPKAPTNYALEDSLG-------------IISNASEIEELALRVNS 244
V S GL++T+ +K YALE S+G +I + SE ++ + +
Sbjct: 283 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKNKLIDDPSEASDIMEKCEN 342
Query: 245 TGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304
T G+ FV AF+GL AP WR DAR+ G+T T ++H RA+LE + F + +++DS D
Sbjct: 343 TTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSD 402
Query: 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPV 344
G+ + VLR DGG T N MQ +D++ + +
Sbjct: 403 M---GI----EMLHVLRCDGGMTKNKPFMQFNSDIINTKI 435
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 42/293 (14%)
Query: 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNS 141
I ++I+ LTG + VTD + A+ T ++NLKTL WD+ L+ L I E PKI +
Sbjct: 157 IKEYIIFRLTGKL-----VTDTTXAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPT 211
Query: 142 EIIGKIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGE 195
++I I G I G + + A GT IR
Sbjct: 212 KVIFPIKTEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIR----- 266
Query: 196 EVVKSKHGLLSTLAFKLGPKAPTNYALEDSL---GIISN--------ASEIEELALRVNS 244
+ + + + ++ P T+Y L + GI+ N A E + L V
Sbjct: 267 -TIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQ 325
Query: 245 TG-----GIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLD 299
T + F+ G AP W +AR +G+TR K ARAV+E + F + D
Sbjct: 326 TAPAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRXHQKPEXARAVIEGIIFNLYDAAS 385
Query: 300 SKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIES 352
+ +IK+ K + GG ++ + Q+ A++ P++ + +S
Sbjct: 386 N---------LIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTXKEQQS 429
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 23/220 (10%)
Query: 99 HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCP-----I 153
H TD +NAS T L K W L G ++ P+++ E +G + +
Sbjct: 173 HATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLXPRLLEPGEQVGGVSALAARQTGFV 232
Query: 154 TGIPISGCLGNQHAAMLGQACKKGEAKSTY--GTGAFIRLNTGEEVVKSKHGLLSTLA-- 209
+G P+ LG+ AA LG E + TG RL + V G + LA
Sbjct: 233 SGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDXPVGTIFRLAGI 292
Query: 210 -----FKLGPKAPTNYALEDSLGIISN------ASEIEELALRVNST---GGIYFVRAFN 255
++ P L+ +L ++ + A A V G+ FV +
Sbjct: 293 IAGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHXAAAEVQGVTVPDGLLFVPYLH 352
Query: 256 GLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVK 295
P R +G+T T++A AVLE ++
Sbjct: 353 AERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLR 392
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 35/261 (13%)
Query: 101 TDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIG----KIGKGCPITGI 156
+D+S+A+ TM +++ DW L+ + + P + SEI G ++ K + +
Sbjct: 166 SDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATV 225
Query: 157 PISGCLGNQHAAMLGQA-CKKGEAKSTYGT-GAFIRLNTG-----EEVVKS-KHGL---L 205
P+ G+ A +G +A + GT G + ++ G E V S H L
Sbjct: 226 PVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRW 285
Query: 206 STLAFKLGPKAPTNYA-----LEDSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAP 260
++ L + ++A L + +I+ A + +E S ++F+ +G P
Sbjct: 286 HLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADE------SAEPVWFLPYLSGERTP 339
Query: 261 WWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVL 320
A+ V G+T ARAVLE + + + D +D + KP+ V
Sbjct: 340 HNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGI--------KPQSVT 391
Query: 321 RVDGGATVNNLLMQIQADLLG 341
+ GGA + Q+ AD+ G
Sbjct: 392 LIGGGAR-SEYWRQMLADISG 411
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 209 AFKLGPKAPTNYALEDSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWR 263
A KL T+ D GI+++ + + ELAL N G + GLL P R
Sbjct: 202 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 256
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 209 AFKLGPKAPTNYALEDSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWR 263
A KL T+ D GI+++ + + ELAL N G + GLL P R
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257
>pdb|1BXU|A Chain A, Oxidized Plastocyanin From Synechococcus Sp.
pdb|1BXV|A Chain A, Reduced Plastocyanin From Synechococcus Sp
Length = 91
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 42 TVQWRSNKMVP----VQRIPELTRSRQQTASSEGETLDRTL 78
TVQW +NK+ P V+ PEL S + A S GET + T
Sbjct: 28 TVQWVNNKLAPHNVVVEGQPEL--SHKDLAFSPGETFEATF 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,476,448
Number of Sequences: 62578
Number of extensions: 445908
Number of successful extensions: 988
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 28
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)