Query 046958
Match_columns 417
No_of_seqs 192 out of 1827
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02295 glycerol kinase 100.0 2.9E-72 6.2E-77 585.1 36.0 387 17-417 88-512 (512)
2 PTZ00294 glycerol kinase-like 100.0 2.9E-72 6.2E-77 584.3 35.2 381 18-415 89-504 (504)
3 PRK00047 glpK glycerol kinase; 100.0 9.3E-72 2E-76 579.8 35.0 379 17-413 89-498 (498)
4 TIGR01314 gntK_FGGY gluconate 100.0 1E-71 2.2E-76 580.5 32.6 374 17-412 83-496 (505)
5 PRK15027 xylulokinase; Provisi 100.0 1.1E-71 2.4E-76 577.3 32.0 373 17-412 82-482 (484)
6 TIGR01311 glycerol_kin glycero 100.0 1.1E-70 2.4E-75 571.0 34.9 379 17-412 85-493 (493)
7 COG0554 GlpK Glycerol kinase [ 100.0 1.3E-70 2.7E-75 539.7 30.9 379 21-414 94-498 (499)
8 TIGR01312 XylB D-xylulose kina 100.0 6.4E-69 1.4E-73 556.8 33.1 375 12-406 75-480 (481)
9 TIGR01315 5C_CHO_kinase FGGY-f 100.0 1.4E-68 3.1E-73 560.2 28.1 375 17-412 83-540 (541)
10 PRK10939 autoinducer-2 (AI-2) 100.0 2E-66 4.3E-71 542.3 32.0 375 17-415 89-508 (520)
11 PRK04123 ribulokinase; Provisi 100.0 7.9E-66 1.7E-70 541.2 31.2 378 17-409 94-533 (548)
12 TIGR01234 L-ribulokinase L-rib 100.0 1.1E-65 2.3E-70 538.5 31.4 376 17-412 97-533 (536)
13 PRK10331 L-fuculokinase; Provi 100.0 4.2E-66 9.1E-71 533.8 27.8 352 17-397 86-468 (470)
14 COG1070 XylB Sugar (pentulose 100.0 2.9E-64 6.2E-69 523.1 31.7 378 16-413 88-498 (502)
15 PRK10640 rhaB rhamnulokinase; 100.0 1E-64 2.2E-69 522.6 22.2 365 17-408 70-466 (471)
16 TIGR02628 fuculo_kin_coli L-fu 100.0 3.1E-63 6.7E-68 511.6 25.5 345 17-389 85-465 (465)
17 PLN02669 xylulokinase 100.0 1.2E-58 2.7E-63 484.8 29.8 381 5-410 103-550 (556)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 9.5E-60 2E-64 484.5 20.5 334 17-376 82-446 (454)
19 KOG2517 Ribulose kinase and re 100.0 1.9E-58 4.1E-63 463.6 26.1 382 21-415 99-512 (516)
20 COG1069 AraB Ribulose kinase [ 100.0 2E-54 4.3E-59 431.0 26.8 373 18-414 97-530 (544)
21 KOG2531 Sugar (pentulose and h 100.0 2.2E-34 4.7E-39 279.8 21.9 381 5-408 103-543 (545)
22 PF02782 FGGY_C: FGGY family o 100.0 2.7E-30 5.9E-35 236.8 17.5 178 179-365 1-198 (198)
23 PF00370 FGGY_N: FGGY family o 100.0 7.8E-31 1.7E-35 248.6 6.2 146 17-171 84-245 (245)
24 TIGR00241 CoA_E_activ CoA-subs 98.5 3.3E-07 7.1E-12 87.1 7.5 75 272-360 172-248 (248)
25 PRK13317 pantothenate kinase; 98.4 1.2E-05 2.7E-10 77.4 17.4 165 177-362 97-273 (277)
26 TIGR03192 benz_CoA_bzdQ benzoy 97.8 5E-05 1.1E-09 73.1 8.0 78 274-364 210-289 (293)
27 TIGR02259 benz_CoA_red_A benzo 97.6 0.00013 2.8E-09 72.5 7.3 77 273-361 350-432 (432)
28 TIGR00555 panK_eukar pantothen 97.6 0.0031 6.7E-08 60.7 16.4 161 178-359 103-278 (279)
29 TIGR03286 methan_mark_15 putat 97.6 0.00028 6E-09 70.7 8.6 75 275-361 326-401 (404)
30 COG1924 Activator of 2-hydroxy 97.4 0.00044 9.6E-09 67.9 7.5 108 224-362 273-389 (396)
31 TIGR02261 benz_CoA_red_D benzo 97.3 0.00069 1.5E-08 64.4 7.5 76 274-361 181-262 (262)
32 CHL00094 dnaK heat shock prote 97.2 0.00083 1.8E-08 72.3 8.0 53 317-369 329-382 (621)
33 PRK13410 molecular chaperone D 97.2 0.0018 3.9E-08 70.1 9.7 52 317-368 329-381 (668)
34 PLN02920 pantothenate kinase 1 96.9 0.034 7.4E-07 55.6 15.5 165 177-361 166-350 (398)
35 TIGR02529 EutJ ethanolamine ut 96.8 0.0027 5.8E-08 60.1 6.1 65 281-359 173-238 (239)
36 PRK15080 ethanolamine utilizat 96.7 0.0051 1.1E-07 59.1 7.7 45 317-361 222-267 (267)
37 PRK00290 dnaK molecular chaper 96.7 0.0052 1.1E-07 66.3 8.4 85 277-367 293-378 (627)
38 PTZ00186 heat shock 70 kDa pre 96.7 0.006 1.3E-07 65.9 8.8 52 316-367 353-405 (657)
39 PF00012 HSP70: Hsp70 protein; 96.6 0.0055 1.2E-07 65.6 7.9 50 317-366 329-379 (602)
40 TIGR02350 prok_dnaK chaperone 96.5 0.0071 1.5E-07 64.8 8.1 85 277-367 291-376 (595)
41 PRK05183 hscA chaperone protei 96.5 0.0089 1.9E-07 64.3 8.3 51 317-367 329-380 (616)
42 PLN03184 chloroplast Hsp70; Pr 96.4 0.013 2.8E-07 63.7 9.2 51 317-367 366-417 (673)
43 TIGR01991 HscA Fe-S protein as 96.4 0.011 2.4E-07 63.4 8.5 83 277-366 279-363 (599)
44 PRK11678 putative chaperone; P 96.4 0.021 4.5E-07 59.1 10.0 82 273-363 365-447 (450)
45 PRK01433 hscA chaperone protei 96.3 0.018 3.9E-07 61.6 9.8 50 317-366 309-359 (595)
46 PRK13928 rod shape-determining 96.3 0.0087 1.9E-07 59.4 6.8 76 281-363 246-323 (336)
47 PF03702 UPF0075: Uncharacteri 96.2 0.048 1.1E-06 54.6 11.4 84 278-373 258-348 (364)
48 PRK09585 anmK anhydro-N-acetyl 96.2 0.021 4.6E-07 57.0 8.6 76 277-364 259-339 (365)
49 PTZ00400 DnaK-type molecular c 96.1 0.012 2.6E-07 63.9 6.9 51 317-367 368-419 (663)
50 PF03630 Fumble: Fumble ; Int 95.9 0.053 1.1E-06 53.9 9.8 164 177-360 157-339 (341)
51 PRK13927 rod shape-determining 95.8 0.023 5E-07 56.2 6.9 76 281-363 247-324 (334)
52 PTZ00009 heat shock 70 kDa pro 95.7 0.029 6.4E-07 60.8 7.8 50 317-366 333-384 (653)
53 PLN02902 pantothenate kinase 95.6 0.35 7.6E-06 53.0 15.5 164 178-361 216-399 (876)
54 TIGR00904 mreB cell shape dete 95.6 0.025 5.5E-07 56.0 6.6 45 319-363 282-327 (333)
55 PRK13411 molecular chaperone D 95.6 0.03 6.5E-07 60.7 7.5 85 277-367 294-380 (653)
56 KOG0103 Molecular chaperones H 95.2 0.046 1E-06 57.8 6.9 77 280-365 306-383 (727)
57 PRK14878 UGMP family protein; 95.2 0.1 2.2E-06 51.6 9.2 73 277-359 212-287 (323)
58 PRK13930 rod shape-determining 95.2 0.035 7.6E-07 54.9 5.9 45 319-363 283-328 (335)
59 PRK09604 UGMP family protein; 95.0 0.11 2.4E-06 51.5 8.9 82 277-368 225-313 (332)
60 PF02543 CmcH_NodU: Carbamoylt 94.7 0.16 3.4E-06 51.0 9.0 79 277-367 133-217 (360)
61 PF01869 BcrAD_BadFG: BadF/Bad 94.7 0.18 3.9E-06 48.3 9.1 73 281-361 193-271 (271)
62 COG2377 Predicted molecular ch 94.5 0.18 4E-06 49.8 8.7 57 277-345 263-320 (371)
63 TIGR00143 hypF [NiFe] hydrogen 94.5 0.096 2.1E-06 57.1 7.5 76 277-362 629-711 (711)
64 PRK13929 rod-share determining 94.4 0.12 2.5E-06 51.4 7.1 44 317-360 278-323 (335)
65 PRK09472 ftsA cell division pr 94.0 0.21 4.6E-06 51.2 8.5 79 279-362 293-387 (420)
66 TIGR01175 pilM type IV pilus a 94.0 0.16 3.4E-06 50.5 7.2 62 280-349 253-315 (348)
67 COG0443 DnaK Molecular chapero 93.9 0.22 4.7E-06 53.2 8.4 55 315-369 308-363 (579)
68 PF11104 PilM_2: Type IV pilus 93.8 0.18 3.9E-06 50.1 7.2 62 279-348 244-306 (340)
69 TIGR03723 bact_gcp putative gl 93.7 0.4 8.7E-06 47.2 9.4 62 278-349 231-295 (314)
70 PF06723 MreB_Mbl: MreB/Mbl pr 93.5 0.087 1.9E-06 52.0 4.4 44 318-361 275-319 (326)
71 PTZ00340 O-sialoglycoprotein e 93.5 0.5 1.1E-05 47.0 9.7 61 279-349 236-299 (345)
72 KOG1794 N-Acetylglucosamine ki 93.5 0.74 1.6E-05 44.2 10.2 193 159-367 102-320 (336)
73 KOG0100 Molecular chaperones G 93.4 0.22 4.7E-06 49.8 6.8 54 314-367 360-415 (663)
74 TIGR03722 arch_KAE1 universal 93.2 0.41 8.9E-06 47.3 8.6 63 277-349 213-278 (322)
75 PRK09605 bifunctional UGMP fam 92.8 0.55 1.2E-05 49.7 9.5 76 278-363 217-299 (535)
76 PTZ00297 pantothenate kinase; 92.3 4.6 0.0001 47.8 16.6 75 277-361 1362-1444(1452)
77 COG2192 Predicted carbamoyl tr 91.6 0.49 1.1E-05 49.2 7.0 76 279-367 261-339 (555)
78 TIGR01174 ftsA cell division p 91.1 0.42 9.1E-06 48.1 5.9 33 317-349 314-347 (371)
79 TIGR00329 gcp_kae1 metallohydr 91.0 0.78 1.7E-05 44.9 7.6 61 278-348 230-293 (305)
80 PF07318 DUF1464: Protein of u 90.8 0.56 1.2E-05 46.3 6.2 79 282-373 239-326 (343)
81 PRK03011 butyrate kinase; Prov 90.6 13 0.00029 37.2 16.0 70 282-359 269-343 (358)
82 COG0533 QRI7 Metal-dependent p 90.5 2.3 4.9E-05 42.0 10.0 62 278-349 233-297 (342)
83 TIGR03281 methan_mark_12 putat 90.0 0.77 1.7E-05 44.5 6.2 70 283-366 242-314 (326)
84 KOG0101 Molecular chaperones H 89.9 0.62 1.3E-05 49.5 6.0 75 280-367 311-387 (620)
85 COG3426 Butyrate kinase [Energ 88.2 1.8 4E-05 41.4 7.2 60 281-348 269-330 (358)
86 COG0068 HypF Hydrogenase matur 87.4 2.7 5.8E-05 45.2 8.6 77 276-362 663-746 (750)
87 KOG0102 Molecular chaperones m 86.7 0.7 1.5E-05 47.9 3.8 89 276-370 319-408 (640)
88 PRK00976 hypothetical protein; 86.5 4.4 9.5E-05 39.9 9.1 49 317-366 264-314 (326)
89 COG1521 Pantothenate kinase ty 84.4 8.5 0.00018 36.6 9.7 141 163-362 107-249 (251)
90 KOG2201 Pantothenate kinase Pa 84.0 9.7 0.00021 37.4 9.9 160 178-359 176-355 (371)
91 PF03727 Hexokinase_2: Hexokin 80.1 5 0.00011 37.9 6.5 89 271-365 138-242 (243)
92 KOG1369 Hexokinase [Carbohydra 79.9 5.6 0.00012 41.2 7.2 91 270-366 366-469 (474)
93 KOG0104 Molecular chaperones G 75.0 4.8 0.0001 43.6 5.1 52 317-368 365-418 (902)
94 PRK09557 fructokinase; Reviewe 71.7 20 0.00044 34.6 8.5 69 283-361 221-299 (301)
95 PTZ00107 hexokinase; Provision 71.4 19 0.0004 37.5 8.4 89 271-365 361-461 (464)
96 PRK00180 acetate kinase A/prop 71.4 16 0.00034 37.3 7.7 55 283-346 298-355 (402)
97 COG4972 PilM Tfp pilus assembl 71.3 15 0.00033 36.1 7.2 64 279-349 257-320 (354)
98 TIGR00016 ackA acetate kinase. 68.9 19 0.00041 36.6 7.7 55 284-346 303-359 (404)
99 PLN02914 hexokinase 68.2 21 0.00045 37.4 8.0 48 318-365 432-488 (490)
100 PRK13310 N-acetyl-D-glucosamin 67.9 32 0.00069 33.3 9.0 71 282-362 221-301 (303)
101 PRK12440 acetate kinase; Revie 66.3 20 0.00043 36.4 7.2 50 283-341 296-346 (397)
102 PF00814 Peptidase_M22: Glycop 65.5 27 0.00058 33.5 7.7 59 280-348 195-255 (268)
103 PRK13328 pantothenate kinase; 64.8 39 0.00085 32.1 8.6 71 276-363 183-253 (255)
104 PRK13329 pantothenate kinase; 64.4 43 0.00094 31.7 8.8 140 163-362 104-245 (249)
105 PRK07157 acetate kinase; Provi 64.3 23 0.00049 36.0 7.1 56 283-346 295-352 (400)
106 PRK05082 N-acetylmannosamine k 64.3 36 0.00079 32.6 8.5 70 283-362 210-287 (291)
107 PRK07058 acetate kinase; Provi 64.2 22 0.00047 36.1 7.0 50 283-341 294-344 (396)
108 PF01968 Hydantoinase_A: Hydan 63.3 12 0.00026 36.3 4.9 73 277-359 207-283 (290)
109 COG4820 EutJ Ethanolamine util 62.7 20 0.00043 32.9 5.7 65 283-361 207-272 (277)
110 COG1077 MreB Actin-like ATPase 62.3 10 0.00022 37.3 4.0 71 281-358 254-326 (342)
111 PRK13327 pantothenate kinase; 62.1 55 0.0012 30.9 9.0 142 163-365 99-240 (242)
112 TIGR00744 ROK_glcA_fam ROK fam 60.2 40 0.00086 32.7 8.1 70 283-362 228-309 (318)
113 PRK12379 propionate/acetate ki 59.9 34 0.00073 34.8 7.5 50 283-341 293-343 (396)
114 PLN02405 hexokinase 57.7 42 0.00092 35.2 8.0 95 271-366 382-491 (497)
115 TIGR02707 butyr_kinase butyrat 56.3 71 0.0015 32.0 9.1 60 282-349 267-328 (351)
116 PRK13326 pantothenate kinase; 56.3 65 0.0014 30.8 8.5 142 162-361 109-253 (262)
117 PRK12408 glucokinase; Provisio 56.1 40 0.00086 33.4 7.3 69 284-362 249-332 (336)
118 COG2971 Predicted N-acetylgluc 53.9 65 0.0014 31.4 8.0 69 283-366 225-294 (301)
119 KOG2707 Predicted metalloprote 51.1 49 0.0011 33.0 6.7 55 278-341 272-330 (405)
120 COG0849 ftsA Cell division ATP 50.7 58 0.0013 33.4 7.5 61 280-349 293-353 (418)
121 PRK13321 pantothenate kinase; 50.0 89 0.0019 29.6 8.4 70 276-362 183-252 (256)
122 PRK13331 pantothenate kinase; 49.4 94 0.002 29.6 8.3 142 162-361 97-247 (251)
123 PLN02596 hexokinase-like 48.3 43 0.00093 35.1 6.3 90 271-366 382-486 (490)
124 PRK13917 plasmid segregation p 48.1 72 0.0016 31.7 7.7 44 317-363 292-336 (344)
125 PRK13322 pantothenate kinase; 47.6 1.1E+02 0.0023 28.9 8.5 69 276-362 175-243 (246)
126 PRK00292 glk glucokinase; Prov 47.6 54 0.0012 31.9 6.7 69 284-362 231-314 (316)
127 PLN02362 hexokinase 46.1 1.1E+02 0.0023 32.4 8.8 48 319-366 444-500 (509)
128 PRK09698 D-allose kinase; Prov 45.8 1.1E+02 0.0023 29.5 8.5 69 281-363 215-296 (302)
129 PRK12397 propionate kinase; Re 45.2 77 0.0017 32.3 7.3 49 283-340 297-346 (404)
130 PRK13320 pantothenate kinase; 44.1 1.3E+02 0.0029 28.3 8.5 67 276-360 173-239 (244)
131 PRK14101 bifunctional glucokin 43.9 77 0.0017 34.4 7.7 76 282-366 244-333 (638)
132 PTZ00288 glucokinase 1; Provis 42.6 1.4E+02 0.0031 30.4 9.0 49 317-365 324-392 (405)
133 TIGR00671 baf pantothenate kin 42.1 56 0.0012 30.8 5.6 117 163-329 101-219 (243)
134 PF06406 StbA: StbA protein; 41.7 1.2E+02 0.0027 29.6 8.2 38 317-356 273-314 (318)
135 COG5146 PanK Pantothenate kina 39.8 2.5E+02 0.0054 26.7 9.1 166 177-361 146-330 (342)
136 PLN02666 5-oxoprolinase 39.3 1.4E+02 0.0031 35.2 9.2 77 277-361 454-532 (1275)
137 PRK13318 pantothenate kinase; 39.2 1.8E+02 0.0038 27.5 8.6 70 276-362 183-252 (258)
138 COG1940 NagC Transcriptional r 38.8 1.4E+02 0.003 28.9 8.0 72 282-363 223-307 (314)
139 cd00012 ACTIN Actin; An ubiqui 38.0 13 0.00029 37.1 0.7 47 317-363 290-347 (371)
140 COG1548 Predicted transcriptio 34.5 1.4E+02 0.0031 28.6 6.7 69 280-361 252-327 (330)
141 TIGR03739 PRTRC_D PRTRC system 34.2 1.6E+02 0.0035 28.8 7.7 42 317-360 274-317 (320)
142 PF00871 Acetate_kinase: Aceto 32.4 67 0.0015 32.6 4.7 55 283-346 295-352 (388)
143 PRK13324 pantothenate kinase; 31.8 1E+02 0.0022 29.4 5.6 142 163-363 108-252 (258)
144 TIGR00749 glk glucokinase, pro 31.1 69 0.0015 31.3 4.5 40 319-358 263-316 (316)
145 PF07592 DDE_Tnp_ISAZ013: Rhod 31.0 1.3E+02 0.0029 29.5 6.2 74 262-350 142-223 (311)
146 cd07207 Pat_ExoU_VipD_like Exo 29.1 42 0.00091 29.9 2.4 47 320-367 2-48 (194)
147 COG1058 CinA Predicted nucleot 28.8 93 0.002 29.7 4.7 31 317-347 61-93 (255)
148 COG5012 Predicted cobalamin bi 27.4 1E+02 0.0023 28.7 4.6 48 285-341 163-211 (227)
149 PF02685 Glucokinase: Glucokin 27.4 2.7E+02 0.0059 27.4 7.9 45 318-362 256-314 (316)
150 cd07212 Pat_PNPLA9 Patatin-lik 22.9 63 0.0014 31.7 2.5 56 320-377 2-61 (312)
151 TIGR03492 conserved hypothetic 22.6 1.9E+02 0.0041 29.3 5.9 64 277-354 63-126 (396)
152 KOG3530 FERM domain protein EH 22.3 2E+02 0.0043 30.7 6.0 76 325-405 101-176 (616)
153 KOG2708 Predicted metalloprote 22.2 3.7E+02 0.008 25.4 7.0 56 276-341 224-279 (336)
154 PF12029 DUF3516: Domain of un 21.7 69 0.0015 32.9 2.5 65 334-404 165-229 (461)
155 KOG0680 Actin-related protein 21.0 1.1E+02 0.0024 30.2 3.6 47 284-341 296-342 (400)
156 COG2012 RPB5 DNA-directed RNA 20.7 51 0.0011 25.3 1.0 21 121-141 27-47 (80)
157 PF08841 DDR: Diol dehydratase 20.0 4.5E+02 0.0098 25.7 7.4 170 154-345 108-305 (332)
No 1
>PLN02295 glycerol kinase
Probab=100.00 E-value=2.9e-72 Score=585.08 Aligned_cols=387 Identities=65% Similarity=0.986 Sum_probs=326.9
Q ss_pred cc-ccCCcccccccccCCcccHHHHHhh------------hhhccccccccchHHHHhhhhcCCCccccc----ccceEE
Q 046958 17 NL-GFIFFPLGPSEHWAGFRLVVENRTV------------QWRSNKMVPVQRIPELTRSRQQTASSEGET----LDRTLM 79 (417)
Q Consensus 17 ~~-~~~g~pl~p~i~W~D~R~~~~~~~~------------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~----~~~~~~ 79 (417)
.+ |.+|+||+|+|+|+|.|+.++++++ +++|+++++.++++||+|+++|+|+ ++ +++.+|
T Consensus 88 ~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~~~~~ 164 (512)
T PLN02295 88 AWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVDA---VKEAVKSGDALF 164 (512)
T ss_pred EEECCCCCCcccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCHH---HHHhhhcCceEE
Confidence 46 5789999999999999999886443 3578899999999999999999997 67 556689
Q ss_pred echhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCC-CCcE
Q 046958 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPIT-GIPI 158 (417)
Q Consensus 80 ~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~-g~pV 158 (417)
++++|||.|+|||..+..++++|+|+||+|++||+++++||+++++.+||+.++||+|+++++++|+|+.+ +.. |+||
T Consensus 165 ~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~-~a~~g~pV 243 (512)
T PLN02295 165 GTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKG-WPLAGVPI 243 (512)
T ss_pred EcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceeccccc-cccCCCcE
Confidence 99999999999993000047999999999999999999999999999999999999999999999999987 444 9999
Q ss_pred EeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchh-----------hhh---h
Q 046958 159 SGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNY-----------ALE---D 224 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-----------~l~---~ 224 (417)
++|++|++|+++|+|+++|++.+++|||+++.+.++..+..++.+....++|..+...++.| +++ +
T Consensus 244 ~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~ 323 (512)
T PLN02295 244 AGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRD 323 (512)
T ss_pred EEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHH
Confidence 99999999999999997899999999998876655433344444444334433211012222 222 4
Q ss_pred hcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046958 225 SLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304 (417)
Q Consensus 225 ~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 304 (417)
.|+...++++++++++++++++|++|+|||.|+|+|+||+++||.|+||+..|+++||+||++|||||++|++++.|++.
T Consensus 324 ~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 324 NLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45433457788888877777789999999999999999999999999999999999999999999999999999999863
Q ss_pred -----ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccc
Q 046958 305 -----AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSER 379 (417)
Q Consensus 305 -----~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~ 379 (417)
.+.+ +++|+++||+++|++|+||+|||+|+||++++..|++++|||++|++++|.+++.+++.+++
T Consensus 404 ~~~~~~~~~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~- 474 (512)
T PLN02295 404 AGEEKSHKG--------LFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEK- 474 (512)
T ss_pred hcccccCCC--------cceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhc-
Confidence 1335 78999999999999999999999999999999999999999999999999999988765466
Q ss_pred cCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhccccccC
Q 046958 380 TKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNLADLSL 417 (417)
Q Consensus 380 ~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~~~~~ 417 (417)
....++|+|++++.+ | ++|++|+++|++.+.|.++++
T Consensus 475 ~~~~~~~~P~~~~~~-y~~~y~~~~~~~~~~~~~~~~~~ 512 (512)
T PLN02295 475 WKNTTTFRPKLDEEE-RAKRYASWCKAVERSFDLADLSI 512 (512)
T ss_pred cCCCeEECCCCCHHH-HHHHHHHHHHHHHHHhcchhcCC
Confidence 367899999999999 7 579999999999999988874
No 2
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=2.9e-72 Score=584.26 Aligned_cols=381 Identities=45% Similarity=0.711 Sum_probs=327.9
Q ss_pred ccc-CCcccccccccCCcccHHHHHhh-----------hhhccccccccchHHHHhhhhcCCCcccccc----cceEEec
Q 046958 18 LGF-IFFPLGPSEHWAGFRLVVENRTV-----------QWRSNKMVPVQRIPELTRSRQQTASSEGETL----DRTLMTT 81 (417)
Q Consensus 18 ~~~-~g~pl~p~i~W~D~R~~~~~~~~-----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~----~~~~~~~ 81 (417)
+|. +|+||+|+|+|+|+|+.++++++ +++|+++++.++++|++|+++|+|+ +++ ++.++++
T Consensus 89 ~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~---~~~~~~~~~~~~~~ 165 (504)
T PTZ00294 89 WDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPA---VKDAVKEGTLLFGT 165 (504)
T ss_pred EECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHH---HHHhhhcCCeEEEc
Confidence 444 59999999999999999986543 3579999999999999999999997 677 4556999
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc---CCCCCCCcE
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK---GCPITGIPI 158 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~---g~l~~g~pV 158 (417)
++|||.|+|||+ ++.++|+|+||+||+||+++++|++++++.+||+.++||+|+++++++|.|+. + +++|+||
T Consensus 166 ~~dyl~~~LTG~---~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~~-~~~g~pV 241 (504)
T PTZ00294 166 IDTWLIWNLTGG---KSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVP-LLEGVPI 241 (504)
T ss_pred HHHHHHHHhcCC---ceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhcC-CCCCCcE
Confidence 999999999984 36899999999999999999999999999999999999999999999999974 4 7889999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCC-----------chhhhh---
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAP-----------TNYALE--- 223 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~-----------~~~~l~--- 223 (417)
++|++|++|+++|+|+ ++|++.+++|||+++.+.+.+.+..++.+.+..++|..+...+ ++..++
T Consensus 242 ~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~ 321 (504)
T PTZ00294 242 TGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLR 321 (504)
T ss_pred EEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHH
Confidence 9999999999999999 9999999999998865555434444545554444443311111 222222
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQK 303 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~ 303 (417)
+.|+...+++++++++++++++++++|+|||.|+|+|+||+++||.|+||+.+|+++||+||++|||||.+|++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~ 401 (504)
T PTZ00294 322 DNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEK 401 (504)
T ss_pred HHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554456888888888888888999999999999999999999999999999999999999999999999999999987
Q ss_pred hccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCC
Q 046958 304 DAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTS 383 (417)
Q Consensus 304 ~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~ 383 (417)
..|.+ +++|+++||+++|+.|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+ ....
T Consensus 402 ~~g~~--------~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~~~~-~~~~ 472 (504)
T PTZ00294 402 DAGIE--------LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVKKLI-RRSN 472 (504)
T ss_pred hhCCC--------cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHHHhc-cCCC
Confidence 45776 89999999999999999999999999999999999999999999999999999999885433 2357
Q ss_pred cEEeCCCCHHHHHH-HHHHHHHHHHHHhccccc
Q 046958 384 TTFKPLLNEEFRKK-KAESQCRAVERTFNLADL 415 (417)
Q Consensus 384 ~~~~P~~~~~~~y~-~y~~~~~~~~~~~~~~~~ 415 (417)
++|+|++++++ |+ +|++|+++|+...+|.++
T Consensus 473 ~~~~P~~~~~~-y~~~~~~~~~~~~~~~~~~~~ 504 (504)
T PTZ00294 473 STFSPQMSAEE-RKAIYKEWNKAVERSLKWAKL 504 (504)
T ss_pred cEECCCCCHHH-HHHHHHHHHHHHHHHhccccC
Confidence 89999999999 95 699999999999999864
No 3
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=9.3e-72 Score=579.83 Aligned_cols=379 Identities=42% Similarity=0.631 Sum_probs=323.0
Q ss_pred ccccC-CcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCccccccc----ceEEec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLD----RTLMTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~----~~~~~~ 81 (417)
.+|.+ |+||+|+|+|+|+|+.++++++ +++|+++++.++++||+|+++|+|+ ++++ ..+|++
T Consensus 89 ~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~---~~~~~~~~~~~~~~ 165 (498)
T PRK00047 89 VWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEG---ARERAEKGELLFGT 165 (498)
T ss_pred EEECCCCcCCcccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHh---HHHHHhcCCeEEeC
Confidence 36644 9999999999999999986554 2578999999999999999999997 5433 455889
Q ss_pred hhhHHHHHHhCCCCCce-EEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCC-CCCCCcEE
Q 046958 82 IDTWLIWSLTGGVNGDL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGC-PITGIPIS 159 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~-l~~g~pV~ 159 (417)
++|||.|+|||+ + .++|+|+||+|++||+++++||+++|+.+||+.++||+|+++++++|.|++.. +.+||||+
T Consensus 166 ~~dyl~~~LTG~----~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~~l~~g~pV~ 241 (498)
T PRK00047 166 IDTWLVWKLTGG----KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYGFFGGEVPIA 241 (498)
T ss_pred hHHhHhhhhcCC----CeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccccCCCCceEE
Confidence 999999999973 5 89999999999999999999999999999999999999999999999997522 67899999
Q ss_pred eccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC---------CCCCchhhhh---hhc
Q 046958 160 GCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG---------PKAPTNYALE---DSL 226 (417)
Q Consensus 160 ~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g---------~~~~~~~~l~---~~~ 226 (417)
+|++|++|+++|+|+ ++|++++++|||+++.+.+.+.|..++.+....+++... ....++..++ +.|
T Consensus 242 ~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~l~W~~~~~ 321 (498)
T PRK00047 242 GIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAGSAIQWLRDGL 321 (498)
T ss_pred EEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHHHHHHHHHHHh
Confidence 999999999999999 999999999999987666644455554444333333221 0111222232 445
Q ss_pred CCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046958 227 GIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAV 306 (417)
Q Consensus 227 ~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g 306 (417)
+....++++++++++++++++++|+|||.|+|+|+||+++||.|+||+.+|+++||+||++|||||.+|++++.|++..|
T Consensus 322 ~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g 401 (498)
T PRK00047 322 KIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSG 401 (498)
T ss_pred cCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43345677788887778888999999999999999999999999999999999999999999999999999999986457
Q ss_pred ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEE
Q 046958 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTF 386 (417)
Q Consensus 307 ~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~ 386 (417)
.+ +++|+++||++||++|+||+|||+|+||+++...|++++|||++|++++|.+++++++ ..+. +..++|
T Consensus 402 ~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~-~~~~~~ 471 (498)
T PRK00047 402 IR--------LKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQW-KIDRRF 471 (498)
T ss_pred CC--------CceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-Hhhc-CCCeEE
Confidence 77 8999999999999999999999999999999999999999999999999999999887 5553 678999
Q ss_pred eCCCCHHHHH-HHHHHHHHHHHHHhccc
Q 046958 387 KPLLNEEFRK-KKAESQCRAVERTFNLA 413 (417)
Q Consensus 387 ~P~~~~~~~y-~~y~~~~~~~~~~~~~~ 413 (417)
+|++++++ | ++|++|+++|++.+.|.
T Consensus 472 ~P~~~~~~-y~~~~~~~~~~~~~~~~~~ 498 (498)
T PRK00047 472 EPQMDEEE-REKLYAGWKKAVKRTLAWA 498 (498)
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHhccC
Confidence 99999988 8 57999999999988773
No 4
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1e-71 Score=580.51 Aligned_cols=374 Identities=24% Similarity=0.307 Sum_probs=326.7
Q ss_pred ccccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|.|+.++++++ +++|+++++.++++||+|+++|+|+ .++++.+|++++|||
T Consensus 83 ~~D~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~---~~~~~~~~l~~~dyl 159 (505)
T TIGR01314 83 AFDENWQPLTRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPD---IYQKAAKYLEIKGYI 159 (505)
T ss_pred EECCCcCCcccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChh---HHHhhcEEECHHHHH
Confidence 578899999999999999999886654 3679999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|++ | |++|+||++
T Consensus 160 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~G-L~~g~pV~~ 233 (505)
T TIGR01314 160 FQRLFG-----TYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMG-IQSSTPFVI 233 (505)
T ss_pred HHHHcC-----CceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHhC-CCCCCeEEE
Confidence 999999 8999999999999999999999999999999999999999999999999974 6 899999999
Q ss_pred ccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeece-------ecC-CCCCchhhhh---hhcCC
Q 046958 161 CLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAF-------KLG-PKAPTNYALE---DSLGI 228 (417)
Q Consensus 161 g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~-------~~g-~~~~~~~~l~---~~~~~ 228 (417)
|++|++|+++|+|+ ++|++++++|||+++..+++ +|..++.+.. ++| ..+ ....++.+++ +.+..
T Consensus 234 g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~ 310 (505)
T TIGR01314 234 GASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVID-KPKTDEKGRI--FCYALTKEHWVIGGPVNNGGDVLRWARDEIFD 310 (505)
T ss_pred eccHHHHHHhcCCCCCCCcEEEEechhheeeeccC-cCccCCCCce--EEEEecCCcEEEEeeecchHhHHHHHHHHhhh
Confidence 99999999999999 99999999999999877664 4544444421 222 111 1112222222 22210
Q ss_pred ----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 046958 229 ----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDV 297 (417)
Q Consensus 229 ----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~ 297 (417)
.+.|+.|+++++++| ++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.++++
T Consensus 311 ~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~~~~ 390 (505)
T TIGR01314 311 SEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTV 390 (505)
T ss_pred hhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 135888999988875 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhc
Q 046958 298 LDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASS 377 (417)
Q Consensus 298 ~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~ 377 (417)
++.+.+..|.+ +++|+++||++||+.|+||+|||+|+||++++..|++++|||++|++++|.++|++++ ..
T Consensus 391 ~~~~~~~~g~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~ 461 (505)
T TIGR01314 391 ALALVEVMGDP--------LNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-ST 461 (505)
T ss_pred HHHHHHhcCCC--------CcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HH
Confidence 99997755766 8999999999999999999999999999999999999999999999999999999887 66
Q ss_pred cccCCCcEEeCCCCHHHHHH-HHHHHHHHHHHHhcc
Q 046958 378 ERTKTSTTFKPLLNEEFRKK-KAESQCRAVERTFNL 412 (417)
Q Consensus 378 ~~~~~~~~~~P~~~~~~~y~-~y~~~~~~~~~~~~~ 412 (417)
+ .+..++|+|++++++.|+ +|++|+++|+++...
T Consensus 462 ~-~~~~~~~~P~~~~~~~Y~~~y~~y~~~~~~~~~~ 496 (505)
T TIGR01314 462 M-VGTTETHTPIEKNFEIYREISPIFINLSRSLLAE 496 (505)
T ss_pred h-cCCCceECcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 367899999999999995 799999999988763
No 5
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=1.1e-71 Score=577.34 Aligned_cols=373 Identities=20% Similarity=0.237 Sum_probs=321.1
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIW 88 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~ 88 (417)
.+|.+|+||+|+|+|+|+|+.+++++++ .+|+++++.++++||+|+++|+|+ .++++.+|++++|||.|
T Consensus 82 ~~D~~g~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe---~~~~~~~~~~~~dyl~~ 158 (484)
T PRK15027 82 LLDAQQRVLRPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPE---IFRQIDKVLLPKDYLRL 158 (484)
T ss_pred EECCCcCCccccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHH---HHHHhhhhcChHHHHHh
Confidence 4788999999999999999999987663 578999999999999999999997 89999999999999999
Q ss_pred HHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEecc
Q 046958 89 SLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISGCL 162 (417)
Q Consensus 89 ~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~g~ 162 (417)
+||| +.++|+|+||+|++||+++++|++++++.+||+.++||+|+++++++|+|++ | |+ ++||++|+
T Consensus 159 ~LTG-----~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~G-L~-~~pV~~g~ 231 (484)
T PRK15027 159 RMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWG-MA-TVPVVAGG 231 (484)
T ss_pred hhcC-----CccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHhC-CC-CCeEEecc
Confidence 9999 8999999999999999999999999999999999999999999999999974 6 76 69999999
Q ss_pred chHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-------CCCchhhhh---hhcCCCCc
Q 046958 163 GNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-------KAPTNYALE---DSLGIISN 231 (417)
Q Consensus 163 ~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-------~~~~~~~l~---~~~~~~~~ 231 (417)
+|++|+++|+|+ ++|++++++|||+++..+++ .+..++.+....+++..+. ...++..++ +.++. +.
T Consensus 232 ~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-~~ 309 (484)
T PRK15027 232 GDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSE-GFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-SN 309 (484)
T ss_pred cHHHHHHhccCcccCCcEEEEecCceEEEEecC-CcccCchhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-cc
Confidence 999999999999 99999999999998876654 3443333322223332210 011111122 34443 45
Q ss_pred HHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 046958 232 ASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310 (417)
Q Consensus 232 ~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~ 310 (417)
++++.++++++ |++++++|+|||.|||+|+||+++||+|+||+.+|+++||+||++|||||.++++++.|++ .|.+
T Consensus 310 ~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~-- 386 (484)
T PRK15027 310 VPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIK-- 386 (484)
T ss_pred HHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--
Confidence 77787777776 4888999999999999999999999999999999999999999999999999999999987 5776
Q ss_pred ccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCC
Q 046958 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPL 389 (417)
Q Consensus 311 ~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~ 389 (417)
+++|+++||++||++|+||+|||+|+||++... .+++++|||++|++++|.++|++++.+.+ +..++|+|+
T Consensus 387 ------~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~~~~--~~~~~~~P~ 458 (484)
T PRK15027 387 ------PQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQL--PLEQSHLPD 458 (484)
T ss_pred ------ccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHHhhc--CCCceECCC
Confidence 899999999999999999999999999977654 45889999999999999999999875333 678899999
Q ss_pred CCHHHHHH-HHHHHHHHHHHHhcc
Q 046958 390 LNEEFRKK-KAESQCRAVERTFNL 412 (417)
Q Consensus 390 ~~~~~~y~-~y~~~~~~~~~~~~~ 412 (417)
+++++.|+ +|++|+++|++++++
T Consensus 459 ~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 459 AQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999995 799999999987754
No 6
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=1.1e-70 Score=571.03 Aligned_cols=379 Identities=47% Similarity=0.699 Sum_probs=325.8
Q ss_pred ccccC-CcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccc----eEEec
Q 046958 17 NLGFI-FFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDR----TLMTT 81 (417)
Q Consensus 17 ~~~~~-g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~----~~~~~ 81 (417)
.+|.+ |+||+|+|+|+|+|+.+++++++ ++|.++++.++++||+|+++|+|+ +++++ .+|++
T Consensus 85 ~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe---~~~~~~~~~~~~~~ 161 (493)
T TIGR01311 85 VWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPG---VREAAERGELLFGT 161 (493)
T ss_pred EEECCCCcCcccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHH---HHHHhhcCCeEEEC
Confidence 36655 99999999999999999876552 579999999999999999999997 67755 45889
Q ss_pred hhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEec
Q 046958 82 IDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGC 161 (417)
Q Consensus 82 ~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~g 161 (417)
++|||.|+|||+ ++.++|+|+||+|+|||+++++|++++++.+||++++||+|+++++++|.|++..+.+|+||++|
T Consensus 162 ~~dyl~~~LtG~---~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~g~pV~~g 238 (493)
T TIGR01311 162 IDTWLIWNLTGG---KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAEIPITGV 238 (493)
T ss_pred HhHhhhhhccCC---ceEEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCCCceEEEe
Confidence 999999999992 27899999999999999999999999999999999999999999999999986327799999999
Q ss_pred cchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC----------CCCCchhhhh---hhcC
Q 046958 162 LGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG----------PKAPTNYALE---DSLG 227 (417)
Q Consensus 162 ~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g----------~~~~~~~~l~---~~~~ 227 (417)
++|++|+++|+|+ ++|++++++|||+++.+.+...+..++.+....++|..+ ....++..++ +.|+
T Consensus 239 ~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~ 318 (493)
T TIGR01311 239 LGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQWLRDNLK 318 (493)
T ss_pred cccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeehhhhHHHHHHHHHHhC
Confidence 9999999999999 999999999999886655543344444443333333221 0111222332 4555
Q ss_pred CCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046958 228 IISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVE 307 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 307 (417)
....++++++++++++++++++|+|||.|||+|+||+++||+|+|++.+|+++||+||++|||||.+|++++.|++..|.
T Consensus 319 ~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~ 398 (493)
T TIGR01311 319 LIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGV 398 (493)
T ss_pred CCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44567888888877788889999999999999999999999999999999999999999999999999999999864476
Q ss_pred cccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEe
Q 046958 308 KGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFK 387 (417)
Q Consensus 308 ~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~ 387 (417)
. +++|+++||++||++|+||+|||+|+||++++..|++++|||++|+.++|.|+|++++ +++. +..++|+
T Consensus 399 ~--------~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~-~~~~~~~ 468 (493)
T TIGR01311 399 E--------ITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALW-RVEKTFE 468 (493)
T ss_pred C--------CceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhc-CCCcEEC
Confidence 6 8999999999999999999999999999999999999999999999999999999987 6663 6789999
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 388 PLLNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 388 P~~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
|++++++ | +.|++|+++|+++++|
T Consensus 469 P~~~~~~-y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 469 PEMDEEE-REARYAGWKEAVKRSLGW 493 (493)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHHhcC
Confidence 9999988 8 5799999999999876
No 7
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=1.3e-70 Score=539.74 Aligned_cols=379 Identities=45% Similarity=0.699 Sum_probs=345.2
Q ss_pred CCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCccccc-ccceEEechhhHHHHH
Q 046958 21 IFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGET-LDRTLMTTIDTWLIWS 89 (417)
Q Consensus 21 ~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~-~~~~~~~~~~dyi~~~ 89 (417)
.|+|+.|+|.|+|+|+.+.+++++ +||..+.|.|+..|+.|+.+|.|...+.. ++-.+|.++..||.|+
T Consensus 94 tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~ 173 (499)
T COG0554 94 TGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWK 173 (499)
T ss_pred CCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheee
Confidence 489999999999999999988773 67999999999999999999999532122 3447899999999999
Q ss_pred HhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEeccchHHHhH
Q 046958 90 LTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISGCLGNQHAAM 169 (417)
Q Consensus 90 LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~g~~D~~aa~ 169 (417)
|||+ ..++||+||||+|+|||+++.+||+++|+.+|||.++||+|.++.++.|.+..+.+...+||..-.||++||+
T Consensus 174 LTgg---~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g~~vPI~g~~GDQQAAL 250 (499)
T COG0554 174 LTGG---KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAEVPITGVAGDQQAAL 250 (499)
T ss_pred ccCC---ceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccCCceeeccccchhHHHH
Confidence 9996 5889999999999999999999999999999999999999999999999987653567899999999999999
Q ss_pred hcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh--------------hhcCCCCcHHH
Q 046958 170 LGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIISNASE 234 (417)
Q Consensus 170 lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~--------------~~~~~~~~~~~ 234 (417)
+|.+| ++|++..+.||+++++++++.+++.++.+++.+.+|.++ +...|+|| +.++++++..+
T Consensus 251 fGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~--gk~~YALEGsif~aGaavqWLrd~L~~i~~a~~ 328 (499)
T COG0554 251 FGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLD--GKVTYALEGSIFVAGAAVQWLRDGLGLIDDASD 328 (499)
T ss_pred hhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccC--CeEEEEEecceeehhhHHHHHHHhcCccCchhH
Confidence 99999 999999999999999999998888888889888887664 24455554 55777788888
Q ss_pred HHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Q 046958 235 IEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDA 314 (417)
Q Consensus 235 l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~ 314 (417)
.+.+|.+++.++|++|+|.|.|..+||||+++||.|+||+..++++|++||++|+|||+.+++++.|++..|.+
T Consensus 329 ~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~------ 402 (499)
T COG0554 329 SEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIK------ 402 (499)
T ss_pred HHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------
Confidence 99999998888999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHH
Q 046958 315 KPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEF 394 (417)
Q Consensus 315 ~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 394 (417)
+++++|.||.++|+++||++||++|.||+++...|.+|+|||++|+.++|.++|+++..+.+ ...++|+|..+..+
T Consensus 403 --~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~~~~--~~~~~f~p~m~~~~ 478 (499)
T COG0554 403 --LTRLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELAELW--PLDKEFEPGMDEEE 478 (499)
T ss_pred --ceeEEEcCccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHHhhh--cccceeCCCCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999996555 67899999999888
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 046958 395 RKKKAESQCRAVERTFNLAD 414 (417)
Q Consensus 395 ~y~~y~~~~~~~~~~~~~~~ 414 (417)
+-++|..|++++++.+.|..
T Consensus 479 r~~~y~~W~~AV~rs~~~~~ 498 (499)
T COG0554 479 REELYAGWKKAVKRSLGWRK 498 (499)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 88999999999999998864
No 8
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=6.4e-69 Score=556.81 Aligned_cols=375 Identities=24% Similarity=0.337 Sum_probs=325.7
Q ss_pred Ccccccc--ccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEE
Q 046958 12 PKVNTNL--GFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLM 79 (417)
Q Consensus 12 ~~~~~~~--~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~ 79 (417)
+++...+ |.+|+|+.|+++|+|.|..++++++ +.+|+...+.++++||+|+++|+|+ .++++.+|
T Consensus 75 ~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~ 151 (481)
T TIGR01312 75 GQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPE---VFARIAKV 151 (481)
T ss_pred cCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChH---HHHHhhee
Confidence 3444555 7789999999999999997765544 2568888899999999999999997 78999999
Q ss_pred echhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCC
Q 046958 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPI 153 (417)
Q Consensus 80 ~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~ 153 (417)
++++|||.|+||| +.++|+|+||+|||||+++++|++++|+.+||++++||+|+++++++|++++ | |+
T Consensus 152 ~~~~~yi~~~LtG-----~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~G-l~ 225 (481)
T TIGR01312 152 MLPKDYLRYRLTG-----EYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLG-LS 225 (481)
T ss_pred eCchHHHhhhhcC-----CeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhC-CC
Confidence 9999999999999 8999999999999999999999999999999999999999999999999973 6 88
Q ss_pred CCCcEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCC-------CCCchhhhh--
Q 046958 154 TGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGP-------KAPTNYALE-- 223 (417)
Q Consensus 154 ~g~pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~-------~~~~~~~l~-- 223 (417)
+|+||++|++|++|+++|+|+ ++|++++++|||+++..+++ .+..++.+....++|.... ...++..++
T Consensus 226 ~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~ 304 (481)
T TIGR01312 226 AGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTD-KPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWF 304 (481)
T ss_pred CCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecC-CcccCcccceeeeeeecCCceEEEeEehhhHHHHHHH
Confidence 999999999999999999999 99999999999999877664 4455444433334443210 111222232
Q ss_pred -hhcCCCCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046958 224 -DSLGIISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSK 301 (417)
Q Consensus 224 -~~~~~~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l 301 (417)
+.|+. .+|++|++++++++ ++++++|+|||.|+|.|+||+.+||+|+|++.+|+++|++||++||+||.+|++++.|
T Consensus 305 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l 383 (481)
T TIGR01312 305 RELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDIL 383 (481)
T ss_pred HHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33442 46888999888875 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccC
Q 046958 302 QKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTK 381 (417)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~ 381 (417)
++..|.+ +++|+++||++||+.|+|++|||+|+||++++..|++++|||++|+.++|.+++++++.+.+ .+
T Consensus 384 ~~~~~~~--------~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~-~~ 454 (481)
T TIGR01312 384 REAGGIP--------IQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAV-VK 454 (481)
T ss_pred HHhcCCC--------cceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhc-cC
Confidence 8744566 89999999999999999999999999999999999999999999999999999999987777 47
Q ss_pred CCcEEeCCCCHHHHH-HHHHHHHHHH
Q 046958 382 TSTTFKPLLNEEFRK-KKAESQCRAV 406 (417)
Q Consensus 382 ~~~~~~P~~~~~~~y-~~y~~~~~~~ 406 (417)
..++|+|++++++.| ++|++|+++|
T Consensus 455 ~~~~~~P~~~~~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 455 QTESVLPIAENVEAYEELYERYKKLY 480 (481)
T ss_pred CCceECCCHHHHHHHHHHHHHHHHHh
Confidence 788999999999999 5799999875
No 9
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=1.4e-68 Score=560.23 Aligned_cols=375 Identities=20% Similarity=0.213 Sum_probs=312.9
Q ss_pred ccccCCccc---------ccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEE
Q 046958 17 NLGFIFFPL---------GPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLM 79 (417)
Q Consensus 17 ~~~~~g~pl---------~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~ 79 (417)
.+|.+|+|| +|+|+|+|.|+.+++++++ ++|+++++.++++||+|+++|+|+ +++++.+|
T Consensus 83 ~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe---~~~~~~~~ 159 (541)
T TIGR01315 83 VLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPP---ELFARCKF 159 (541)
T ss_pred EEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChH---HHHHhhhh
Confidence 367788888 8999999999999976653 679999999999999999999997 89999999
Q ss_pred echhhHHHHHHhCCCCCceEEechhhhhhccccc---CCCCCCCHHHHHhcCCCC---CCC----CCccccCcceee-ec
Q 046958 80 TTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMN---LKTLDWDKPTLETLGIPA---EIR----PKIVSNSEIIGK-IG 148 (417)
Q Consensus 80 ~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d---~~~~~W~~~ll~~~gi~~---~~L----P~i~~~~~~~G~-v~ 148 (417)
++++|||.|+||| +.++|+++++.+++|| +++++||+++++.+||+. ++| |+++++++++|. |+
T Consensus 160 l~~~dyl~~~LTG-----~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G~~v~ 234 (541)
T TIGR01315 160 FDLTDFLTWRATG-----KEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLT 234 (541)
T ss_pred cchhhhheeeeec-----chhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcccccccC
Confidence 9999999999999 8999999999999998 699999999999999984 234 999999999999 87
Q ss_pred c------CCCCCCCcEEeccchHHHhHhcCc---C-CCC-------ceEEeccCcceeeeecCcceeccCCCceeee-ce
Q 046958 149 K------GCPITGIPISGCLGNQHAAMLGQA---C-KKG-------EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-AF 210 (417)
Q Consensus 149 ~------g~l~~g~pV~~g~~D~~aa~lg~g---~-~~g-------~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-~~ 210 (417)
+ | |++|+||++|++|++|+++|+| . ++| ++.+++|||+++..+.+ .+..++ +.+..+ ++
T Consensus 235 ~~~A~~~G-L~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~-~~~~~~-~~~~~~~~~ 311 (541)
T TIGR01315 235 AEAAQELG-LPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTK-GPVFVP-GVWGPYRDA 311 (541)
T ss_pred HHHHHHhC-CCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecC-CCccCC-ceeecccCc
Confidence 3 6 8999999999999999999995 3 555 88999999998776553 343333 232111 11
Q ss_pred ------ec-CCCCCchhhhh---hhcCC------------CCcHHHHHHH----HHhcC-C-----CCCeEEccccCCCC
Q 046958 211 ------KL-GPKAPTNYALE---DSLGI------------ISNASEIEEL----ALRVN-S-----TGGIYFVRAFNGLL 258 (417)
Q Consensus 211 ------~~-g~~~~~~~~l~---~~~~~------------~~~~~~l~~~----a~~~~-~-----~~gl~flP~l~Ger 258 (417)
.. +....++.+++ +.++. .+.|+.|++. +++.+ + ++|++|+|||.|||
T Consensus 312 ~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r 391 (541)
T TIGR01315 312 LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNR 391 (541)
T ss_pred cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccCc
Confidence 11 11112222232 22221 1236545443 44443 3 37999999999999
Q ss_pred CCCCCCCCceEEEcCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHH
Q 046958 259 APWWRDDARSVCIGITRFTSK---AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQI 335 (417)
Q Consensus 259 ~P~~~~~~rg~~~Gl~~~~~~---~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~ 335 (417)
+|+|||++||+|+||+.+|++ +||+||++|||||++|++++.|++ .|.+ +++|+++||++||+.|+||
T Consensus 392 ~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~--------~~~i~~~GGga~s~~w~Qi 462 (541)
T TIGR01315 392 SPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHT--------IKSIFMSGGQCQNPLLMQL 462 (541)
T ss_pred CCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------ccEEEEecCcccCHHHHHH
Confidence 999999999999999999999 899999999999999999999987 5777 8999999999999999999
Q ss_pred HHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHH-HHHH-HHHHHHHHHHHHhcc
Q 046958 336 QADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEE-FRKK-KAESQCRAVERTFNL 412 (417)
Q Consensus 336 ~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~y~-~y~~~~~~~~~~~~~ 412 (417)
+|||+|+||++++..|++++|||++|++++|.++|++++.+.+. +..++|+|+++++ +.|+ +|++|+++|++++.|
T Consensus 463 ~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 463 IADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMS-KPGKTVWPRGDPAKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhc-cCCcEEcCCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998877773 6788999999998 9895 799999999888766
No 10
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=2e-66 Score=542.33 Aligned_cols=375 Identities=23% Similarity=0.236 Sum_probs=315.9
Q ss_pred ccccCCcccccccccCCcccHHHHHhh------------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhh
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV------------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDT 84 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~------------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~d 84 (417)
.+|.+|+||.+ ++|+|.|+.++++++ +++|.++ +.++++||+|+++|+|+ +++++.+|++++|
T Consensus 89 ~~D~~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe---~~~~~~~~~~~~d 163 (520)
T PRK10939 89 LYDRNGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPD---IYRQAHTITMISD 163 (520)
T ss_pred EECCCCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcH---HHHHhheEechhH
Confidence 47789999976 689999999997654 2567654 67899999999999997 8999999999999
Q ss_pred HHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcE
Q 046958 85 WLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPI 158 (417)
Q Consensus 85 yi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV 158 (417)
||.|+||| ++++|+|+||+|||||+++++|++++++.+||+.++||+|+++++++|.|++ | |++|+||
T Consensus 164 yl~~~LTG-----~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~A~~~G-L~~g~pV 237 (520)
T PRK10939 164 WIAYMLSG-----ELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKAAAETG-LRAGTPV 237 (520)
T ss_pred hhhheeeC-----ceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHHHHhhC-CCCCCcE
Confidence 99999999 8999999999999999999999999999999999999999999999999973 6 8999999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceec------CC-CC----Cchhhhhhhc
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKL------GP-KA----PTNYALEDSL 226 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~------g~-~~----~~~~~l~~~~ 226 (417)
++|++|++|+++|+|+ ++|++++++|||+++..+++. +..++......+++.. +. .. ...|.. +.|
T Consensus 238 ~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~-~~~ 315 (520)
T PRK10939 238 VMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPA-PVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFR-DAF 315 (520)
T ss_pred EEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccc-cccCccccceeceeeeCCcceEeeeeccceeeeehHH-hhh
Confidence 9999999999999999 999999999999987666643 3333322111122211 00 00 111222 223
Q ss_pred CC----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCC---CHHHHHHHHHHHHHH
Q 046958 227 GI----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFT---SKAHFARAVLESMCF 292 (417)
Q Consensus 227 ~~----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~---~~~~l~rAvlEgia~ 292 (417)
.. .+.|++|+++++++| +++++ +|||.|+|.|.+++++||+|+||+.+| +++||+||++|||||
T Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvlEgia~ 393 (520)
T PRK10939 316 CAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRALEENAAI 393 (520)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHHHHHHHHH
Confidence 21 135888999888875 77777 699999987655568999999999987 899999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHH
Q 046958 293 LVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEE 372 (417)
Q Consensus 293 ~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~ 372 (417)
.+|++++.|++..|.+ +++|+++||+++|+.|+||+|||+|+||++++..|++++|||++|++++|.++|++
T Consensus 394 ~~~~~l~~l~~~~g~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~ 465 (520)
T PRK10939 394 VSACNLQQIAAFSGVF--------PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLA 465 (520)
T ss_pred HHHHHHHHHHHhcCCC--------CcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHH
Confidence 9999999998744766 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhccccc
Q 046958 373 IFASSERTKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNLADL 415 (417)
Q Consensus 373 ~~~~~~~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~~~~ 415 (417)
++.+.+. +..++|+|++++++.| ++|++|+++|++++.+.+.
T Consensus 466 ~a~~~~~-~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~~~~ 508 (520)
T PRK10939 466 ETGERLV-RWERTFEPNPENHELYQEAKEKWQAVYADQLGLVDH 508 (520)
T ss_pred HHHHHHc-ccCceECcCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9877774 6789999999999999 5799999999988777653
No 11
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=7.9e-66 Score=541.19 Aligned_cols=378 Identities=17% Similarity=0.150 Sum_probs=315.6
Q ss_pred ccccCCcccc-----------cccccCCcccHHHHHhhh------------hh-ccccccccchHHHHhhhhcCCCcccc
Q 046958 17 NLGFIFFPLG-----------PSEHWAGFRLVVENRTVQ------------WR-SNKMVPVQRIPELTRSRQQTASSEGE 72 (417)
Q Consensus 17 ~~~~~g~pl~-----------p~i~W~D~R~~~~~~~~~------------~~-G~~~~~~~~~~kl~wl~~~~p~~~~~ 72 (417)
.+|.+|+||+ |+|+|+|.|+.+++++++ ++ |+.+++.++++||+|+++|+|+ .
T Consensus 94 ~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~---~ 170 (548)
T PRK04123 94 PVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPA---V 170 (548)
T ss_pred EECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHHHHhhCHH---H
Confidence 4667788887 999999999999976552 23 7788888999999999999997 7
Q ss_pred cccceEEechhhHHHHHHhCCCCCceEEechhhhhhcccccCC-CCCCCHHHHHhcC------CCCCCCCCccccCccee
Q 046958 73 TLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLK-TLDWDKPTLETLG------IPAEIRPKIVSNSEIIG 145 (417)
Q Consensus 73 ~~~~~~~~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~-~~~W~~~ll~~~g------i~~~~LP~i~~~~~~~G 145 (417)
++++.+|++++|||.|+|||.....+.++|.|+++.+++||.+ ++.||+++|+.+| |+.++||+|+++++++|
T Consensus 171 ~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~~i~~~llP~l~~~g~~~G 250 (548)
T PRK04123 171 YEAAASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPLLARGLRDKLFTETWTAGEPAG 250 (548)
T ss_pred HHHHhHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHhccchhhhhHhhcCCccccCCCccc
Confidence 8999999999999999999932222456899999999999999 5666999999996 88899999999999999
Q ss_pred eecc------CCCCCCCcEEeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeee-------ceec
Q 046958 146 KIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-------AFKL 212 (417)
Q Consensus 146 ~v~~------g~l~~g~pV~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 212 (417)
.|++ | |++|+||++|++|++|+++|+|+++|++++++|||+++..+++ ++.. ..++...+ .|..
T Consensus 251 ~v~~~~a~~~G-L~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 327 (548)
T PRK04123 251 TLTAEWAQRLG-LPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLAD-KQRA-VPGICGQVDGSIVPGLIGY 327 (548)
T ss_pred ccCHHHHHHhC-CCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecC-Cccc-cCceeecccCcccCCeeee
Confidence 9974 6 8999999999999999999999978999999999998876664 3322 11221110 0111
Q ss_pred -CCCCCchhhhh---hhcCC-----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCC
Q 046958 213 -GPKAPTNYALE---DSLGI-----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRF 276 (417)
Q Consensus 213 -g~~~~~~~~l~---~~~~~-----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~ 276 (417)
+....++.+++ +.++. ...|++|+++++++| ++++++|+|||.|||+|+|||++||.|+||+.+
T Consensus 328 ~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~ 407 (548)
T PRK04123 328 EAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLG 407 (548)
T ss_pred cccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCCCCCCCCCCceEEECCCCC
Confidence 11111222221 23321 135788998888874 889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-cccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA-TVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
|+++||+||++||++|.++++++.|++ .|.+ +++|+++||+ +||++|+||+|||||+||++++..|++++
T Consensus 408 ~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~--------~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~al 478 (548)
T PRK04123 408 TDAPDIYRALIEATAFGTRAIMECFED-QGVP--------VEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPAL 478 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------cceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchH
Confidence 999999999999999999999999997 5766 8999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHH
Q 046958 356 GAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRK-KKAESQCRAVERT 409 (417)
Q Consensus 356 GaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~ 409 (417)
|||++|++++|.++|++++.+.+.....++|+|+++.++.| ++|++|+++++..
T Consensus 479 GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 479 GAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887766334567899999999999 5799999998876
No 12
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.1e-65 Score=538.51 Aligned_cols=376 Identities=16% Similarity=0.136 Sum_probs=318.0
Q ss_pred ccccCCccccc-----------ccccCCcccHHHHHhhh------------hhccccccccchHHHHhhhhcCCCccccc
Q 046958 17 NLGFIFFPLGP-----------SEHWAGFRLVVENRTVQ------------WRSNKMVPVQRIPELTRSRQQTASSEGET 73 (417)
Q Consensus 17 ~~~~~g~pl~p-----------~i~W~D~R~~~~~~~~~------------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~ 73 (417)
.+|.+|+||+| +|+|+|+|+.+++++++ ++|+++++.++++||+|+++|+|+ .+
T Consensus 97 ~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe---~~ 173 (536)
T TIGR01234 97 PIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPA---IY 173 (536)
T ss_pred EECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHHHHHHHhhChH---HH
Confidence 46788999983 99999999999986552 468889999999999999999997 88
Q ss_pred ccceEEechhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCC------CCCCCCCccccCcceeee
Q 046958 74 LDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI------PAEIRPKIVSNSEIIGKI 147 (417)
Q Consensus 74 ~~~~~~~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi------~~~~LP~i~~~~~~~G~v 147 (417)
+++.+|++++|||.|+||| +.++|+|+|+.++++|.+.+.|++++++.+|+ +.++||+|+++++++|.|
T Consensus 174 ~~~~~~l~~~dyl~~~LTG-----~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~lp~~~~p~i~~~g~~~G~v 248 (536)
T TIGR01234 174 QAADRWIELADWIVAQLSG-----DIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRHLPDKLFTDIWTAGEPAGTL 248 (536)
T ss_pred HHHhhhcCHHHHHHHHHhC-----CccccchhcccceeccccccCCCHHHHHHhcchhhhhhhhhcCCceecCCCccccc
Confidence 9999999999999999999 89999999999998877666669999999985 788999999999999999
Q ss_pred cc------CCCCCCCcEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeee-------ceec-
Q 046958 148 GK------GCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTL-------AFKL- 212 (417)
Q Consensus 148 ~~------g~l~~g~pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~-------~~~~- 212 (417)
++ | |++|+||++|++|++|+++|+|+ ++|++++++|||+++..+.+ ++.. ..++...+ .|..
T Consensus 249 ~~~~A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 325 (536)
T TIGR01234 249 TPEWAQRTG-LPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGD-KQRA-VPGMCGVVDGGIVPGFIGYE 325 (536)
T ss_pred CHHHHHHhC-CCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecC-cccc-CCceeeeccCcccCCeeEEe
Confidence 74 6 89999999999999999999999 99999999999998776553 3322 22221100 0111
Q ss_pred CCCCCchhhhh---hhcCC-----------CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCC
Q 046958 213 GPKAPTNYALE---DSLGI-----------ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFT 277 (417)
Q Consensus 213 g~~~~~~~~l~---~~~~~-----------~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~ 277 (417)
+....++.+++ +.+.. .+.|+.|++.+++.| ++++|+|+|||.|||+|+||+++||.|+||+.+|
T Consensus 326 ~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~ 405 (536)
T TIGR01234 326 AGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLAT 405 (536)
T ss_pred ccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCCCCCCCcceEEEECCCCCC
Confidence 11111222221 22311 124788888887775 8899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-cccHHHHHHHHHhhCCcEEccCCCChhHHH
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA-TVNNLLMQIQADLLGSPVLRPADIESTALG 356 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g~pv~~~~~~e~salG 356 (417)
+++||+|||+|||||.+|++++.|++ .|.+ +++|+++||+ ++|++|+||+|||+|+||+++...|++++|
T Consensus 406 ~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~--------~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~G 476 (536)
T TIGR01234 406 DAPLLYRALIEATAFGTRMIMETFTD-SGVP--------VEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALG 476 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--------cceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHH
Confidence 99999999999999999999999987 5777 8999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhcc
Q 046958 357 AAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRK-KKAESQCRAVERTFNL 412 (417)
Q Consensus 357 aAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y-~~y~~~~~~~~~~~~~ 412 (417)
||++|++++|.+++++++...+.....++|+|++++++.| ++|++|+++|++.-+|
T Consensus 477 aA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~ 533 (536)
T TIGR01234 477 AAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCSENAQRYEQLYARYQELAMSFGQY 533 (536)
T ss_pred HHHHHHHHcCCcCCHHHHHHHhhccCCceECCChhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999886776324588999999999989 5799999999887554
No 13
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=4.2e-66 Score=533.82 Aligned_cols=352 Identities=21% Similarity=0.232 Sum_probs=298.9
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|+|+.+++++++ ++|+++.+.++++||+|+++|+|+ +++++.+|++++|||
T Consensus 86 ~~D~~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~---~~~~~~~~l~~~dyl 162 (470)
T PRK10331 86 LVDKQGNLLYPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQ---LLEQAHAWLFISSLI 162 (470)
T ss_pred EECCCcCCccCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHH---HHHHhhhhcCHHHHH
Confidence 5788999999999999999999876552 568888888999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| ++++|+|+||.|++||+++++|++++++.+||+.++||+|+++++++|+|++ | |++|+||++
T Consensus 163 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a~~~G-L~~g~pV~~ 236 (470)
T PRK10331 163 NHRLTG-----EFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAALLG-LPVGIPVIS 236 (470)
T ss_pred HHhhcC-----ccccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHHHHhC-CCCCCeEEE
Confidence 999999 8999999999999999999999999999999999999999999999999973 6 899999999
Q ss_pred ccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCC----Cceeeec-----eecCC-CCCchhhhh---hhcC
Q 046958 161 CLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKH----GLLSTLA-----FKLGP-KAPTNYALE---DSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~----g~~~~~~-----~~~g~-~~~~~~~l~---~~~~ 227 (417)
|++|++|+++|+|+.+|++++++|||.++..+++ +|..+.. +....+. |..+. ...+. +++ +.|+
T Consensus 237 g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~W~~~~~~ 314 (470)
T PRK10331 237 AGHDTQFALFGSGAGQNQPVLSSGTWEILMVRSA-QVDTSLLSQYAGSTCELDSQSGLYNPGMQWLASG-VLEWVRKLFW 314 (470)
T ss_pred ccccHHHHHhCCCCCCCCEEEecchhhhheeecC-CCcccccccccccceeccccCceeeechhhHHHH-HHHHHHHHhc
Confidence 9999999999999977899999999998776554 3333221 2111110 10000 00000 111 3343
Q ss_pred C-CCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046958 228 I-ISNASEIEELALRVN-STGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305 (417)
Q Consensus 228 ~-~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 305 (417)
. ...|+.|+++++++| ++++++|+|+|.|+| ||+|+||+.+|+++||+||++|||||++|++++.|++..
T Consensus 315 ~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 386 (470)
T PRK10331 315 TAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAALEGLTAQLKRNLQVLEKIG 386 (470)
T ss_pred ccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 246899999888774 889999999999888 899999999999999999999999999999999998743
Q ss_pred cccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcE
Q 046958 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTT 385 (417)
Q Consensus 306 g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~ 385 (417)
+.+ +++|+++||++||+.|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+. +..++
T Consensus 387 ~~~--------~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~-~~~~~ 457 (470)
T PRK10331 387 HFK--------ASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMK-YQYRY 457 (470)
T ss_pred CCC--------CceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHh-hccee
Confidence 456 899999999999999999999999999999999999999999999999999999999877773 56789
Q ss_pred EeCCCCHHHHHH
Q 046958 386 FKPLLNEEFRKK 397 (417)
Q Consensus 386 ~~P~~~~~~~y~ 397 (417)
|+|+ .+.+.|+
T Consensus 458 ~~P~-~~~~~y~ 468 (470)
T PRK10331 458 FYPQ-TEPEFIE 468 (470)
T ss_pred ECCC-ccHhhhh
Confidence 9999 5566664
No 14
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-64 Score=523.05 Aligned_cols=378 Identities=27% Similarity=0.372 Sum_probs=323.6
Q ss_pred cccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhH
Q 046958 16 TNLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTW 85 (417)
Q Consensus 16 ~~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dy 85 (417)
..||.+|+||+|+|+|+|.|+.++++++. .+|.++.+.++++||+|+++|+|+ .++++.+|++++||
T Consensus 88 vllD~~g~~L~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~---~~~k~~~il~~~dy 164 (502)
T COG1070 88 VLLDANGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPD---LFAKAAKILLIKDY 164 (502)
T ss_pred EEECCCCCCccccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcH---HHHhhhheechHHH
Confidence 46899999999999999999999988764 468889999999999999999997 89999999999999
Q ss_pred HHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCC-CCCCCccccCcceeeecc------CCCCCCCcE
Q 046958 86 LIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA-EIRPKIVSNSEIIGKIGK------GCPITGIPI 158 (417)
Q Consensus 86 i~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~-~~LP~i~~~~~~~G~v~~------g~l~~g~pV 158 (417)
|.|+||| ++++|+|+||+|+|||++++.|+.++|+.+|+++ ++||+|+++++++|.|++ | |++++||
T Consensus 165 l~~rLTG-----~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~e~A~~~G-l~~~~pV 238 (502)
T COG1070 165 LRYRLTG-----EFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELG-LPAGTPV 238 (502)
T ss_pred HHHHHhC-----CcccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccHHHHHHhC-CCCCCeE
Confidence 9999999 9999999999999999999999999999999995 999999999999999984 6 9999999
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeecee-------cCCCCCchhhhh---hhcC
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFK-------LGPKAPTNYALE---DSLG 227 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~-------~g~~~~~~~~l~---~~~~ 227 (417)
++|+||++++++|+|+ ++|++..++||+.++...++. +..++.+...++++. .+....+.+.++ +.++
T Consensus 239 ~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~ 317 (502)
T COG1070 239 VVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDK-PLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFG 317 (502)
T ss_pred EECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccc-cccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhc
Confidence 9999999999999999 999999999999998876653 566555554444432 222223445554 4444
Q ss_pred CCCcHHHHHHHHHhc---CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046958 228 IISNASEIEELALRV---NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKD 304 (417)
Q Consensus 228 ~~~~~~~l~~~a~~~---~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~ 304 (417)
...++.++...+... +++.++.|+|||.|||.|++++..||.|+|++..|+++|++||++||++|.+++.++.|++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~ 397 (502)
T COG1070 318 LAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEEL 397 (502)
T ss_pred cccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432444443333322 36789999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCC-CCHHHHHhccccCCC
Q 046958 305 AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVF-KEEEIFASSERTKTS 383 (417)
Q Consensus 305 ~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~-~~~~~~~~~~~~~~~ 383 (417)
.|.+ +++|+++||++||++|+||+||++|+||+++...|++++|+|++++.+.+.+ ++.+++.+.+ ...
T Consensus 398 ~g~~--------~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~--~~~ 467 (502)
T COG1070 398 GGKP--------PSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAV--VDA 467 (502)
T ss_pred cCCC--------ccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcc--ccc
Confidence 6877 8899999999999999999999999999999889999899999888887654 4456665554 237
Q ss_pred cEEeCCCCHHHHHH-HHHHHHHHHHHHhccc
Q 046958 384 TTFKPLLNEEFRKK-KAESQCRAVERTFNLA 413 (417)
Q Consensus 384 ~~~~P~~~~~~~y~-~y~~~~~~~~~~~~~~ 413 (417)
+++.|+++..+.|+ +|++|++.|++++...
T Consensus 468 ~~~~p~~~~~~~y~~~~~~~~~~y~~~~~~~ 498 (502)
T COG1070 468 RRIIPDPERAAAYQELYERYRALYQALLALY 498 (502)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 6799999999988754
No 15
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=1e-64 Score=522.56 Aligned_cols=365 Identities=18% Similarity=0.158 Sum_probs=303.0
Q ss_pred ccccCCcccccccccCCcccHHHHHhh----------hhhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTV----------QWRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~----------~~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.||.+|+||+|+|+|+|.|+.++++++ +++|+++.+.++++||+|+++|+|+ .++++.+|++++|||
T Consensus 70 ~lD~~G~pL~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~l~~~dyl 146 (471)
T PRK10640 70 LLDKQGQRVGLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPE---LIAQVAHALLIPDYF 146 (471)
T ss_pred EECCCCCCcCCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChH---HHHHhhHeecHHHHH
Confidence 478899999999999999999987654 3679999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccCCCCCCCcEEe-ccchH
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKGCPITGIPISG-CLGNQ 165 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g~l~~g~pV~~-g~~D~ 165 (417)
.|+||| +.++|+|+||+|+|||+++++||+++++.+||+.++||+|+++++++|.++.. +..|+||++ |++|+
T Consensus 147 ~~~LTG-----~~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~-~g~g~pVv~~g~~D~ 220 (471)
T PRK10640 147 SYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICP-QGNEIPVVAVASHDT 220 (471)
T ss_pred HHHHhC-----CcceeecHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecc-cCCCCCEEEeCCCcH
Confidence 999999 89999999999999999999999999999999999999999999999999765 447999998 68999
Q ss_pred HHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeece--------ecCCCCCchhhhhhhcC---CCCcHH
Q 046958 166 HAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAF--------KLGPKAPTNYALEDSLG---IISNAS 233 (417)
Q Consensus 166 ~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~--------~~g~~~~~~~~l~~~~~---~~~~~~ 233 (417)
+|+++|+|+ ++|++++|+|||+++...++ .|..++.++...+.+ ..-....+.|..+ .++ ....|+
T Consensus 221 ~aa~~g~g~~~~g~~~~s~GT~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~W~~~-~~~~~~~~~~~~ 298 (471)
T PRK10640 221 ASAVIASPLNDSDAAYLSSGTWSLMGFESQ-TPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQ-RVLQERQITDLP 298 (471)
T ss_pred HHHhhccCCCCCCeEEEEeccHhhhheecC-CCcCCHHHHHhccCccCCCCceEEEecchhHHHHHH-HHHHHhccCCHH
Confidence 999999999 99999999999998776664 444433221111111 0000012245443 221 124688
Q ss_pred HHHHHHHhcCCCCCeEEccccCCCCCCCCCC-CCceEEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046958 234 EIEELALRVNSTGGIYFVRAFNGLLAPWWRD-DARSVCIGITRFT------SKAHFARAVLESMCFLVKDVLDSKQKDAV 306 (417)
Q Consensus 234 ~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~-~~rg~~~Gl~~~~------~~~~l~rAvlEgia~~~~~~~~~l~~~~g 306 (417)
++.++++++|++++++ +| .|+|. +|| ++||+|+|++..| +++||+|||+||+||.+|++++.|++..+
T Consensus 299 ~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g 373 (471)
T PRK10640 299 ALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHELAQLRG 373 (471)
T ss_pred HHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888888888887 58 79994 675 8999997766655 99999999999999999999999987446
Q ss_pred ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccC--CCc
Q 046958 307 EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTK--TST 384 (417)
Q Consensus 307 ~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~--~~~ 384 (417)
.+ +++|+++||++||++|+||+|||+|+||+..+. |++++|||++|++++|.+++++++ +++... ..+
T Consensus 374 ~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~ 443 (471)
T PRK10640 374 EP--------FSQLHIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLT 443 (471)
T ss_pred CC--------cceEEEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCce
Confidence 66 799999999999999999999999999988764 899999999999999999999988 555321 578
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHH
Q 046958 385 TFKPLLNEEFRKKKAESQCRAVER 408 (417)
Q Consensus 385 ~~~P~~~~~~~y~~y~~~~~~~~~ 408 (417)
+|+|+++ .+..++|.+|+++++.
T Consensus 444 ~~~P~~~-~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 444 TFTPNPD-SEIARHVAQFQSLRQT 466 (471)
T ss_pred EEcCCCh-HHHHHHHHHHHHHhcc
Confidence 9999988 2344578888888765
No 16
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=3.1e-63 Score=511.64 Aligned_cols=345 Identities=20% Similarity=0.223 Sum_probs=291.5
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|+|+.++++++. ++|+++.+.++++|++|+++|+|+ +++++.+|++++|||
T Consensus 85 ~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe---~~~~~~~~l~~~dyl 161 (465)
T TIGR02628 85 PFDKQGNQLYPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQ---LFERMHKFVFISSMI 161 (465)
T ss_pred EECCCCCCccccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChH---HHHHHHHhhCcHHHH
Confidence 5788999999999999999999876552 678888888999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+|+|||+++++||+++|+.+||+.++||+|+++++++|.|++ | |++|+||++
T Consensus 162 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~~G-l~~g~pV~~ 235 (465)
T TIGR02628 162 THRLTG-----EFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAMLG-LPVGVPVIS 235 (465)
T ss_pred HHHHhC-----CcccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHHHhC-CCCCCCEEe
Confidence 999999 8999999999999999999999999999999999999999999999999973 6 889999999
Q ss_pred ccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeece---------ecCC-CCCc---hhhhhhhcC
Q 046958 161 CLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAF---------KLGP-KAPT---NYALEDSLG 227 (417)
Q Consensus 161 g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~---------~~g~-~~~~---~~~l~~~~~ 227 (417)
|++|++|+++|+|+.+|++++++|||+++...++ +|..+..+.+..+.+ ..+. ...+ .|.. +.|.
T Consensus 236 g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~W~~-~~~~ 313 (465)
T TIGR02628 236 AGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQ-QVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASGVLEWVR-KLFF 313 (465)
T ss_pred cCccHHHHHhccCCCCCcEEEeccchhhheeccC-cCCCCccccccccccccccCCceeeehhhhhhhhHHHHHH-HHhc
Confidence 9999999999999977899999999998765553 444443332211111 0000 0001 1211 2332
Q ss_pred C-----CCcHHHHHHHHHhc-CCCCCeE-EccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046958 228 I-----ISNASEIEELALRV-NSTGGIY-FVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDS 300 (417)
Q Consensus 228 ~-----~~~~~~l~~~a~~~-~~~~gl~-flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~ 300 (417)
. .+.|++|++.++++ |++++++ |+|++. |.+||+|+||+.+|+++||+||++|||||.+|++++.
T Consensus 314 ~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~ 385 (465)
T TIGR02628 314 TAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHIYRAALEGLTAQLKRNLQM 385 (465)
T ss_pred chhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01268889888887 4788998 888862 5689999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhcccc
Q 046958 301 KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERT 380 (417)
Q Consensus 301 l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~ 380 (417)
|++..+.+ +++|+++||++||+.|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+.
T Consensus 386 l~~~~~~~--------~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~- 456 (465)
T TIGR02628 386 LEQIGQFK--------ASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMH- 456 (465)
T ss_pred HHHhcCCC--------cceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhh-
Confidence 98732456 899999999999999999999999999999999999999999999999999999999877773
Q ss_pred CCCcEEeCC
Q 046958 381 KTSTTFKPL 389 (417)
Q Consensus 381 ~~~~~~~P~ 389 (417)
+..++|+|+
T Consensus 457 ~~~~~~~P~ 465 (465)
T TIGR02628 457 PQYRYFYPQ 465 (465)
T ss_pred ccceeeCCC
Confidence 568889996
No 17
>PLN02669 xylulokinase
Probab=100.00 E-value=1.2e-58 Score=484.81 Aligned_cols=381 Identities=15% Similarity=0.119 Sum_probs=306.7
Q ss_pred ccccCCCCccccccccCCccc---------ccccccCCcccHHHHHhhh-----------hhccccccccchHHHHhhhh
Q 046958 5 WTWNLDSPKVNTNLGFIFFPL---------GPSEHWAGFRLVVENRTVQ-----------WRSNKMVPVQRIPELTRSRQ 64 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~g~pl---------~p~i~W~D~R~~~~~~~~~-----------~~G~~~~~~~~~~kl~wl~~ 64 (417)
+-|++++++.-.+||.+|+++ +|+++|+|+|+.+++++++ +||.+.++.++.+||+|+++
T Consensus 103 v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG~~~~~~~t~~ki~wl~~ 182 (556)
T PLN02669 103 VYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTGSRAYERFTGPQIRKIYE 182 (556)
T ss_pred EEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHCCcccccccHHHHHHHHH
Confidence 468888899989999999754 6999999999999986552 57889999999999999999
Q ss_pred cCCCcccccccceEEechhhHHHHHHhCCCCCceE-EechhhhhhcccccCCCCCCCHHHHHhcCCC-CCCCCCccccCc
Q 046958 65 QTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLH-VTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSNSE 142 (417)
Q Consensus 65 ~~p~~~~~~~~~~~~~~~~dyi~~~LTG~~~~~~~-~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~ 142 (417)
|+|+ +++++.+|+.++|||.|+||| +. .+|+|+||+|+|||+++++||+++|+.++++ .++||+++++++
T Consensus 183 ~~Pe---~y~~t~~i~~~~dyl~~~LtG-----~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~~l~~~Lp~~~~~~~ 254 (556)
T PLN02669 183 TQPE---VYHDTERISLVSSFMASLLVG-----DYASIDETDGAGMNLMDIEKRCWSKAALEATAPGLEEKLGKLAPAHA 254 (556)
T ss_pred hChH---HHHHHHhhccHHHHHHHhhcC-----CCccccchhhhhhhhhccccCCcCHHHHHhhCccHHHHCcCCCCCCc
Confidence 9997 899999999999999999999 74 6999999999999999999999999999654 379999999999
Q ss_pred ceeeecc------CCCCCCCcEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecC--
Q 046958 143 IIGKIGK------GCPITGIPISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLG-- 213 (417)
Q Consensus 143 ~~G~v~~------g~l~~g~pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g-- 213 (417)
++|+|++ | |++||||++|++|++|+++|+|+ ++|++.+|+|||+++.++++ .+.+++.+.. ++|...
T Consensus 255 ~~G~v~~~~a~~~G-l~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 330 (556)
T PLN02669 255 VAGKIHPYFVQRFG-FSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITR-EPQPSLEGHV--FPNPVDPE 330 (556)
T ss_pred ceeeeCHHHHHHhC-CCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecC-CCCCCCCcce--eeCccCCC
Confidence 9999974 6 99999999999999999999999 99999999999998877664 3444443322 332210
Q ss_pred ------CCCCchhhhh---hhcCCCCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCC----CCCCCceEEEcCCCC---
Q 046958 214 ------PKAPTNYALE---DSLGIISNASEIEELALRVN-STGGIYFVRAFNGLLAPW----WRDDARSVCIGITRF--- 276 (417)
Q Consensus 214 ------~~~~~~~~l~---~~~~~~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~----~~~~~rg~~~Gl~~~--- 276 (417)
....+..+++ +.++ ..+|+.+++++++.| +++|++++||+.||+.|+ +++.++|.|+|++..
T Consensus 331 ~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~ 409 (556)
T PLN02669 331 SYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLV 409 (556)
T ss_pred CeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCccchhhhccccCccccccc
Confidence 0012223333 3443 246888999888774 788999899999999996 567788999999887
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCC
Q 046958 277 ------TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI 350 (417)
Q Consensus 277 ------~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~ 350 (417)
|+++|++||++||++|++|.+++.|.. +.+ +++|+++||+++|+.|+||+|||||+||++++..
T Consensus 410 ~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~~--~~~--------~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ 479 (556)
T PLN02669 410 EEEVGEFDPPSEVRAIIEGQFLSMRAHAERFGM--PVP--------PKRIIATGGASANQSILKLIASIFGCDVYTVQRP 479 (556)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHhC--CCC--------CcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC
Confidence 799999999999999999999999963 455 7999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCC-------HHHHHhcccc--CCCcEE--eCCC-CHHHHH-HHHHHHHHHHHHHh
Q 046958 351 ESTALGAAFAAGLAIGVFKE-------EEIFASSERT--KTSTTF--KPLL-NEEFRK-KKAESQCRAVERTF 410 (417)
Q Consensus 351 e~salGaAllA~~~~G~~~~-------~~~~~~~~~~--~~~~~~--~P~~-~~~~~y-~~y~~~~~~~~~~~ 410 (417)
|++++|||++|+++. +.+ +++..+.... .....+ +|.+ +..+.| .+.++|.++-+.+.
T Consensus 480 ea~alGAA~~A~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 550 (556)
T PLN02669 480 DSASLGAALRAAHGW--LCNEQGSFVPISCLYEGKLEATSLSCKLAVKAGDQELLSQYGLLMKKRMEIEQQLV 550 (556)
T ss_pred CchHHHHHHHHHHHH--hhhhhcccCChhhhcccccccCcccceeeccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999954 322 2221111100 112223 5555 455666 45666766665554
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=9.5e-60 Score=484.51 Aligned_cols=334 Identities=20% Similarity=0.229 Sum_probs=277.0
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+||+|+|+|+|.|+.+++++++ ++|+++.+.++++||+|+++|+|+ .++++++|+.++|||
T Consensus 82 ~~D~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~---~~~~~~~~l~~~dyl 158 (454)
T TIGR02627 82 LLDQNGQRVGDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPD---LLEKVAHFLLIPDYL 158 (454)
T ss_pred EEcCCCCCccCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChh---HHHHHHHhCCHHHHH
Confidence 4677899999999999999999976652 579999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc-CCCCCCCcEEe-ccch
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK-GCPITGIPISG-CLGN 164 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~-g~l~~g~pV~~-g~~D 164 (417)
.|+||| +.++|+|+||+|+|||+++++|++++++.+||+.++||+|+++++++|.+.. + + +|+||++ |++|
T Consensus 159 ~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~g-l-~g~pVv~~g~~D 231 (454)
T TIGR02627 159 NYRLTG-----KKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQ-G-NQIPVVAVATHD 231 (454)
T ss_pred HHheeC-----CceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeeccc-C-CCCCEEEECCch
Confidence 999999 8999999999999999999999999999999999999999999999999864 5 5 8999998 8899
Q ss_pred HHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeec--------eecCCCCCchhhhhhhcCC---CCcH
Q 046958 165 QHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLA--------FKLGPKAPTNYALEDSLGI---ISNA 232 (417)
Q Consensus 165 ~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~--------~~~g~~~~~~~~l~~~~~~---~~~~ 232 (417)
++|+++|+|+ ++|++++++|||.++...++ .|..++.+....+. |..-....+.|.++ .+.. ...|
T Consensus 232 ~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~-~~~~~~~~~~~ 309 (454)
T TIGR02627 232 TASAVVAAPLQGENAAYLSSGTWSLMGFESQ-TPITNEQALAANITNEGGADGRYRVLKNIMGLWLLQ-RVCRERDINDL 309 (454)
T ss_pred HHHHHhcCCCCCCCcEEEEEcHHHHhcccCC-CCCCCHHHHHhccccccccccEEEeecchhhhHHHH-HHHhhhccccH
Confidence 9999999999 99999999999988765553 44443322111111 10000012335443 2211 2356
Q ss_pred HHHHHHHHhcCCCCCeEEccccCCCCCCCCCCC-Cce------EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046958 233 SEIEELALRVNSTGGIYFVRAFNGLLAPWWRDD-ARS------VCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDA 305 (417)
Q Consensus 233 ~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~-~rg------~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~ 305 (417)
+++.+.+..+|- +.|++.|++.|+|||. +++ .|+||+.+|+++||+||++|||||.+|++++.|++..
T Consensus 310 ~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~ 384 (454)
T TIGR02627 310 PALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLYRQVLLELAELR 384 (454)
T ss_pred HHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667666654432 3366688999999995 544 4599999999999999999999999999999998744
Q ss_pred cccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHh
Q 046958 306 VEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFAS 376 (417)
Q Consensus 306 g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~ 376 (417)
+.+ +++|+++||+++|++|+||+||++|+||+... .|++++|||++|++++|.+++++++.+
T Consensus 385 ~~~--------~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~ 446 (454)
T TIGR02627 385 GKP--------ISQLHIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQ 446 (454)
T ss_pred CCC--------cCEEEEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 666 89999999999999999999999999998765 779999999999999999999988833
No 19
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-58 Score=463.61 Aligned_cols=382 Identities=38% Similarity=0.547 Sum_probs=327.6
Q ss_pred CCcccccccccCCcccHHHHHhhh------------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHH
Q 046958 21 IFFPLGPSEHWAGFRLVVENRTVQ------------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIW 88 (417)
Q Consensus 21 ~g~pl~p~i~W~D~R~~~~~~~~~------------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~ 88 (417)
.|+|+.++|.|+|+|+..++++++ .+|.++++.|..+||+|+++|.|+. ........+.+++|+.|
T Consensus 99 tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~--~~~~~~~~~~~~~~~tw 176 (516)
T KOG2517|consen 99 TGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEV--LKAKEEGGFDLGTFDTW 176 (516)
T ss_pred CCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhhCHHH--HHHHHhcccchhhhhhh
Confidence 367999999999999999998873 4689999999999999999999973 24555566666777766
Q ss_pred HHhCCCCCce-EEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeeccC-C-CCCCCcEEeccchH
Q 046958 89 SLTGGVNGDL-HVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGKG-C-PITGIPISGCLGNQ 165 (417)
Q Consensus 89 ~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~g-~-l~~g~pV~~g~~D~ 165 (417)
++++...... +++|.+|||++++||..++.||..+++.+|+|.+.||++..+++++|.+..+ + +.+|+||.++.+|+
T Consensus 177 l~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~~~~~~~g~~vs~~lgDq 256 (516)
T KOG2517|consen 177 LATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAGDLGLLEGTPVSSCLGDQ 256 (516)
T ss_pred eeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCcccCCcccccccccccccccccccccCcceeechhhH
Confidence 6665332233 6899999999999999999999999999999999999999999999999765 2 78999999999999
Q ss_pred HHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh--------------hhcCCCC
Q 046958 166 HAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE--------------DSLGIIS 230 (417)
Q Consensus 166 ~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~--------------~~~~~~~ 230 (417)
+|+++|..+ ++|+...++||+.++..+++..+.....|++.+..+..|..-+..|++| +.+++++
T Consensus 257 ~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~ 336 (516)
T KOG2517|consen 257 QASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIE 336 (516)
T ss_pred HHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHH
Confidence 999999999 9999999999999999888877777777888766666543222234444 3344445
Q ss_pred cHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 046958 231 NASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGV 310 (417)
Q Consensus 231 ~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~ 310 (417)
...++++++.++..+.+++|.|.|.|.|+|+|||++||.|+|++.+++..||.||++|+|||++|++|+.|++..+.+
T Consensus 337 ~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~-- 414 (516)
T KOG2517|consen 337 ELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQTREILEAMERDGGHP-- 414 (516)
T ss_pred HHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 556677777777778999999999999999999999999999999999999999999999999999999999865467
Q ss_pred ccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCC--CCCHHHHHhccccCCCcEEeC
Q 046958 311 IKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGV--FKEEEIFASSERTKTSTTFKP 388 (417)
Q Consensus 311 ~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~--~~~~~~~~~~~~~~~~~~~~P 388 (417)
+++++++||.++|++++|++||++|+||+++...|.+++|||++|+.+.|. +.+.+++. + ....++|.|
T Consensus 415 ------i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~-~~~~~~~~P 485 (516)
T KOG2517|consen 415 ------ISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--L-TGVGKVFRP 485 (516)
T ss_pred ------cceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--c-CCCcceecC
Confidence 999999999999999999999999999999999999999999999999998 66677764 2 378999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhccccc
Q 046958 389 LLNEEFRKKKAESQCRAVERTFNLADL 415 (417)
Q Consensus 389 ~~~~~~~y~~y~~~~~~~~~~~~~~~~ 415 (417)
+.+...+..+|+.|+++++++++|...
T Consensus 486 ~~~~~~~~~ky~~w~~ave~~~~~~~~ 512 (516)
T KOG2517|consen 486 NIDDKLLDKKYQIWLKAVERQLGYRRI 512 (516)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhHHhh
Confidence 998733336899999999999998764
No 20
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=2e-54 Score=431.01 Aligned_cols=373 Identities=21% Similarity=0.235 Sum_probs=307.5
Q ss_pred cccCCcccccccccCCcccHHHHHhhh--------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHHHHH
Q 046958 18 LGFIFFPLGPSEHWAGFRLVVENRTVQ--------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWLIWS 89 (417)
Q Consensus 18 ~~~~g~pl~p~i~W~D~R~~~~~~~~~--------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi~~~ 89 (417)
|..++..-.++|+|+|+|+.+|+++++ ..|+.+++++..|||+|+++|.|+ +++++.+|+.+.|||.|+
T Consensus 97 v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~---~~~~a~~~fdl~D~l~~~ 173 (544)
T COG1069 97 VLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPA---VWERAAHIFDLADWLTWK 173 (544)
T ss_pred cCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChH---HHHHhhhhhhHHHHHHHH
Confidence 333333333799999999999999986 458999999999999999999997 899999999999999999
Q ss_pred HhCCCCCceEEechhhhhhcccccC-CCCCCCHHHHHhcCCCC-----CCCC-CccccCcceeeecc------CCCCCCC
Q 046958 90 LTGGVNGDLHVTDVSNASRTMLMNL-KTLDWDKPTLETLGIPA-----EIRP-KIVSNSEIIGKIGK------GCPITGI 156 (417)
Q Consensus 90 LTG~~~~~~~~~d~s~As~tgl~d~-~~~~W~~~ll~~~gi~~-----~~LP-~i~~~~~~~G~v~~------g~l~~g~ 156 (417)
||| ...-..+++..-..|.. +.+.|++++++.+|++. +.|| ++++.|+.+|.+++ | |++|+
T Consensus 174 ltG-----~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lG-L~~~~ 247 (544)
T COG1069 174 LTG-----SIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEAAQELG-LPEGT 247 (544)
T ss_pred hhc-----chhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccccCCccccccCHHHHHHhC-CCCCc
Confidence 999 66666666665667777 55669999999999862 4466 68999999999985 6 99999
Q ss_pred cEEeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh------------
Q 046958 157 PISGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE------------ 223 (417)
Q Consensus 157 pV~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~------------ 223 (417)
-|..|..|..|+++|++. .++.++..+|||+|.+..++ ++. .-.|+|.++.. ...|+.|..|
T Consensus 248 ~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~-~~~-~v~GvwGpy~~---ai~Pg~~~~EgGQSatG~l~dh 322 (544)
T COG1069 248 VVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSE-KPR-FVPGVWGPYDG---AVLPGLWLYEGGQSATGDLLDH 322 (544)
T ss_pred EEeccceeccccccccccCCCCeEEEEeccceEEEEecC-Cce-ecCcccccccc---ccCcchhhhcccchhhhHHHHH
Confidence 999999999999999998 99999999999999887664 342 23577765432 2245555444
Q ss_pred --hhcC-------C-CC----cH-------HHHHHHHHhc-CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHH-
Q 046958 224 --DSLG-------I-IS----NA-------SEIEELALRV-NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKA- 280 (417)
Q Consensus 224 --~~~~-------~-~~----~~-------~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~- 280 (417)
+... . .. -| +.|.+...+. |..++++++|+|+|+|+|+.||++||+|+|++++|++.
T Consensus 323 l~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~ 402 (544)
T COG1069 323 LVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPES 402 (544)
T ss_pred HHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCCccceeEEeccccCCCcHH
Confidence 1110 0 01 11 2233333333 57899999999999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHH
Q 046958 281 --HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAA 358 (417)
Q Consensus 281 --~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaA 358 (417)
.+|+|.+|+++|..|+++|.|++ .|.. |++|+++||..||++|||+.|||+|+||+++...++.++|+|
T Consensus 403 l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~--------Id~l~~sGG~~KN~llmql~aDvtg~~v~i~~s~~a~llGsA 473 (544)
T COG1069 403 LALLYRALLEATAFGTRAIIETFED-QGIA--------IDTLFASGGIRKNPLLMQLYADVTGRPVVIPASDQAVLLGAA 473 (544)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-cCCe--------eeEEEecCCcccCHHHHHHHHHhcCCeEEeecccchhhhHHH
Confidence 88999999999999999999998 7998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHhccccCCCcEEeCCC-CHHHHH-HHHHHHHHHHHHHhcccc
Q 046958 359 FAAGLAIGVFKEEEIFASSERTKTSTTFKPLL-NEEFRK-KKAESQCRAVERTFNLAD 414 (417)
Q Consensus 359 llA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~y-~~y~~~~~~~~~~~~~~~ 414 (417)
|+++++.|.+.|+..+...|. ...+...|++ +.+++| ++|++|++++......++
T Consensus 474 m~~avAag~~~dl~~A~~aMs-~~~~~~~~~~~~~~~~y~~lyr~y~~l~~~~~~~~~ 530 (544)
T COG1069 474 MFAAVAAGVHPDLPAAAQAMS-SAVEKTLPPPPERAARYERLYRRYLQLHDDAEKHYA 530 (544)
T ss_pred HHHHHHhccCcchHHHHHHhh-cccceecCChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999985 4444455555 788888 489999999887766443
No 21
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=279.81 Aligned_cols=381 Identities=19% Similarity=0.197 Sum_probs=286.9
Q ss_pred ccccCCCCccccccccCC---------cccccccccCCcccHHHHHhhh-----------hhccccccccchHHHHhhhh
Q 046958 5 WTWNLDSPKVNTNLGFIF---------FPLGPSEHWAGFRLVVENRTVQ-----------WRSNKMVPVQRIPELTRSRQ 64 (417)
Q Consensus 5 ~~~~~~~~~~~~~~~~~g---------~pl~p~i~W~D~R~~~~~~~~~-----------~~G~~~~~~~~~~kl~wl~~ 64 (417)
.-|.+++-++-++|+.+- -.+...-.|+|+.+..++++++ +||...+..|+.++|+-+.+
T Consensus 103 VyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSRAy~RFTGpQIrKi~~ 182 (545)
T KOG2531|consen 103 VYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSRAYERFTGPQIRKIYQ 182 (545)
T ss_pred eeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcchhhhhcccHHHHHHHH
Confidence 458888888888888852 3556677899999999998874 78999999999999999999
Q ss_pred cCCCcccccccceEEechhhHHHHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCC-CCCCCCccccCcc
Q 046958 65 QTASSEGETLDRTLMTTIDTWLIWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP-AEIRPKIVSNSEI 143 (417)
Q Consensus 65 ~~p~~~~~~~~~~~~~~~~dyi~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~~~LP~i~~~~~~ 143 (417)
.+|| .|+++.++-.+++|++..|-|. ....|+|.+|++.|||++++.||.++|+.+.-+ +++|-..+++..+
T Consensus 183 ~~pe---~Ye~TerISLVSsFlaSlllG~----~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL~~KL~~pv~~~~~ 255 (545)
T KOG2531|consen 183 QEPE---AYEKTERISLVSSFLASLLLGS----YAPIDESDGSGMNLLDIRKKKWSKALLDACAPDLEEKLGKPVPPMSI 255 (545)
T ss_pred hChH---hhhccceeehHHHHHHHHHhcc----ccceecccccCchHHHHhhhhhhHHHHhhhChhHHHHhCCCCCcccc
Confidence 9997 8999999999999999999994 778999999999999999999999999988644 3577788999999
Q ss_pred eeeecc------CCCCCCCcEEeccchHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCC
Q 046958 144 IGKIGK------GCPITGIPISGCLGNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAP 217 (417)
Q Consensus 144 ~G~v~~------g~l~~g~pV~~g~~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~ 217 (417)
.|+|.. | +++++.|++-.||++++..|...+++++.+|+|||..+.+.+. ++.+.+.|.+ ||+... +
T Consensus 256 ~G~I~~Yfv~r~g-F~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~-~~~p~~egHv--f~hP~~---~ 328 (545)
T KOG2531|consen 256 AGTISKYFVKRYG-FPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTK-EYHPSPEGHV--FCHPTD---P 328 (545)
T ss_pred ccchhhhhHhhcC-CCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcC-CCCCCCCcce--eccCCC---c
Confidence 999975 6 9999999999999999999988877999999999999888885 4555555533 454331 2
Q ss_pred chhhh----------hhhcC---CCCcHHHHHHHHHhcC-CCCCeEEccccCCCCCCCC-------CCCCc-eE--EEcC
Q 046958 218 TNYAL----------EDSLG---IISNASEIEELALRVN-STGGIYFVRAFNGLLAPWW-------RDDAR-SV--CIGI 273 (417)
Q Consensus 218 ~~~~l----------~~~~~---~~~~~~~l~~~a~~~~-~~~gl~flP~l~Ger~P~~-------~~~~r-g~--~~Gl 273 (417)
..|+. .+.+. ...+|+.+++...+.| +++|.+-+=|--+|-.|.. +.+.. +. -.++
T Consensus 329 ~~YM~mlCfkNgSL~RE~ir~~~~~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v 408 (545)
T KOG2531|consen 329 NHYMGMLCFKNGSLTRERIRNESANGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEV 408 (545)
T ss_pred cceEEEEEecCChHHHHHHhhcccCCCHHHHHHHhccCcCCCCCceeEecccccccCCCCccceEEEecCCccchhhccc
Confidence 22221 11111 1358999999887765 6665532222235666621 11100 00 0133
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChh
Q 046958 274 TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIEST 353 (417)
Q Consensus 274 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~s 353 (417)
-...++..-+||++||-++..|...+.|.- ... +..+|+++||.++|+.+.|++|||||.||+..+..+++
T Consensus 409 ~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~--~~~-------~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa 479 (545)
T KOG2531|consen 409 AKFSDPEIEARALVEGQFLSKRARAEPLGF--KSN-------PPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSA 479 (545)
T ss_pred ccCCCchHHHHHHHHHhHhHhhhhhccccC--CCC-------CCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchh
Confidence 344568889999999999999999888753 221 17899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CCHH-HHH------hccccCCCcEEeCCCCHHHHHH-HHHHHHHHHHH
Q 046958 354 ALGAAFAAGLAIGVF-KEEE-IFA------SSERTKTSTTFKPLLNEEFRKK-KAESQCRAVER 408 (417)
Q Consensus 354 alGaAllA~~~~G~~-~~~~-~~~------~~~~~~~~~~~~P~~~~~~~y~-~y~~~~~~~~~ 408 (417)
++|+|+-|+++.-.. .... ... +....+..-..+|.+.+.+.|. +.++|+++.+.
T Consensus 480 ~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~~e~Y~~ll~~~~e~e~~ 543 (545)
T KOG2531|consen 480 ALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSANWEIYGPLLKRLSELEDT 543 (545)
T ss_pred hHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcchHHHHHHHHHHHHHHHHh
Confidence 999999998885211 0000 000 0000123345578888888884 67788777654
No 22
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.97 E-value=2.7e-30 Score=236.77 Aligned_cols=178 Identities=36% Similarity=0.576 Sum_probs=140.3
Q ss_pred eEEeccCcceeeeecCcceeccCCCceeeec-------eecC-CCCCchhhhh---hhcCC---C---Cc-HHHHHH--H
Q 046958 179 AKSTYGTGAFIRLNTGEEVVKSKHGLLSTLA-------FKLG-PKAPTNYALE---DSLGI---I---SN-ASEIEE--L 238 (417)
Q Consensus 179 ~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~-------~~~g-~~~~~~~~l~---~~~~~---~---~~-~~~l~~--~ 238 (417)
+++|+|||+++...+ ++|..+..+++.++. |... ....++..++ +.++. . .. ++.+.. .
T Consensus 1 a~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVS-SEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEA 79 (198)
T ss_dssp EEEEESSSEEEEEEE-TSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHH
T ss_pred CEEEehhhhHHhhEe-CccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHh
Confidence 478999999998866 456666667765554 1111 0011121221 34332 1 11 233332 2
Q ss_pred HHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc
Q 046958 239 ALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF 318 (417)
Q Consensus 239 a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~ 318 (417)
....+++++++|+|+|.|+|+|+||+++||.|+|++.+|++.|++||++||++|.++++++.|++.++.+ ++
T Consensus 80 ~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~--------~~ 151 (198)
T PF02782_consen 80 AASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP--------IR 151 (198)
T ss_dssp HHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--------ES
T ss_pred hhccCcccceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc--------ce
Confidence 2233578899999999999999999999999999999999999999999999999999999999865877 99
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhc
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~ 365 (417)
+|+++||+++|++|+|++||++|+||++++..|++++|||++|++++
T Consensus 152 ~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 152 RIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp EEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred eeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999874
No 23
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=99.96 E-value=7.8e-31 Score=248.62 Aligned_cols=146 Identities=34% Similarity=0.454 Sum_probs=132.8
Q ss_pred ccccCCcccccccccCCcccHHHHHhhh----------hhccccccccchHHHHhhhhcCCCcccccccceEEechhhHH
Q 046958 17 NLGFIFFPLGPSEHWAGFRLVVENRTVQ----------WRSNKMVPVQRIPELTRSRQQTASSEGETLDRTLMTTIDTWL 86 (417)
Q Consensus 17 ~~~~~g~pl~p~i~W~D~R~~~~~~~~~----------~~G~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~dyi 86 (417)
.+|.+|+|++|+|+|+|+|+.+++++++ .+|.++++.++++|++|+++|+|+ .++++.+|++++|||
T Consensus 84 ~~D~~~~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~---~~~~~~~~~~~~dyl 160 (245)
T PF00370_consen 84 LLDKDGKPLRPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPE---IFEKAAKFLTLSDYL 160 (245)
T ss_dssp EEETTSSBSSCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHH---HHHHHHEEEEHHHHH
T ss_pred eeccccccccccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCch---hhhhhhhcccHHHHH
Confidence 5788999999999999999999987663 568999999999999999999997 899999999999999
Q ss_pred HHHHhCCCCCceEEechhhhhhcccccCCCCCCCHHHHHhcCCCCCCCCCccccCcceeeecc------CCCCCCCcEEe
Q 046958 87 IWSLTGGVNGDLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEIRPKIVSNSEIIGKIGK------GCPITGIPISG 160 (417)
Q Consensus 87 ~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~LP~i~~~~~~~G~v~~------g~l~~g~pV~~ 160 (417)
.|+||| +.++|+|+||+||+||+++++|++++++.+||+.++||+|+++++++|++++ | |++|+||++
T Consensus 161 ~~~LtG-----~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~~~a~~~G-l~~~~pV~~ 234 (245)
T PF00370_consen 161 AYKLTG-----RAATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTPEAAKELG-LPEGTPVIA 234 (245)
T ss_dssp HHHHHS-----C-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEHHHHHHHT-STTTEEEEE
T ss_pred Hhhccc-----cccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECHHHHHHhC-CCCCCEEEE
Confidence 999999 9999999999999999999999999999999999999999999999999984 7 999999999
Q ss_pred ccchHHHhHhc
Q 046958 161 CLGNQHAAMLG 171 (417)
Q Consensus 161 g~~D~~aa~lg 171 (417)
|++|++||++|
T Consensus 235 g~~D~~aa~lG 245 (245)
T PF00370_consen 235 GGGDQAAAALG 245 (245)
T ss_dssp EEEHHHHHHHH
T ss_pred EchHHHHhhcC
Confidence 99999999987
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.48 E-value=3.3e-07 Score=87.14 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=64.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccCCC
Q 046958 272 GITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADI 350 (417)
Q Consensus 272 Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~ 350 (417)
.++...+++++++++++++++.+...+..+ + ++ .|+++||+++|+.|+|.+++.++.||.+++..
T Consensus 172 ~l~~g~~~~di~~~~~~~va~~i~~~~~~~------~--------~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~ 237 (248)
T TIGR00241 172 LLAAGVKKEDILAGVYESIAERVAEMLQRL------K--------IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEP 237 (248)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHhhc------C--------CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCc
Confidence 345567899999999999999999866432 2 44 79999999999999999999999999999887
Q ss_pred C-hhHHHHHHH
Q 046958 351 E-STALGAAFA 360 (417)
Q Consensus 351 e-~salGaAll 360 (417)
+ .+|+|||++
T Consensus 238 ~~~~AlGaAl~ 248 (248)
T TIGR00241 238 QIVGAVGAALL 248 (248)
T ss_pred cHHHHHHHHhC
Confidence 5 999999984
No 25
>PRK13317 pantothenate kinase; Provisional
Probab=98.44 E-value=1.2e-05 Score=77.38 Aligned_cols=165 Identities=18% Similarity=0.068 Sum_probs=105.7
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhh--hhhhcCCCCcHHHHHHHHHhcCCCCCeEEcccc
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYA--LEDSLGIISNASEIEELALRVNSTGGIYFVRAF 254 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l 254 (417)
.-+.+++||...+..+.+. . +-...|....++.. +.+.+-...+++++.+++.+-....-=+.+-.+
T Consensus 97 ~~~i~~iG~g~si~~~~g~-~----------~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dI 165 (277)
T PRK13317 97 DYIFTNIGTGTSIHYVDGN-S----------QRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDI 165 (277)
T ss_pred cEEEEEecCceEEEEEeCC-c----------eEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccc
Confidence 4578899998776554321 1 00111111112222 223442236899999999863211111223444
Q ss_pred CCCCCCCCCCCCceEEEc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEec-Cccc
Q 046958 255 NGLLAPWWRDDARSVCIG-----ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDG-GATV 328 (417)
Q Consensus 255 ~Ger~P~~~~~~rg~~~G-----l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~G-G~a~ 328 (417)
+|...+....+.+++.|| ++...+++|++++++..++..+..+.-.+.+. .. +++|+++| |.++
T Consensus 166 y~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~--~~--------~~~Ivf~G~gla~ 235 (277)
T PRK13317 166 YKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILAGVIGLVGEVITTLSIQAARE--KN--------IENIVYIGSTLTN 235 (277)
T ss_pred cCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cC--------CCeEEEECccccc
Confidence 443223334567777766 34467899999999999988887764443332 23 67999999 5799
Q ss_pred cHHHHHHHHHhh---CCcEEccCCC-ChhHHHHHHHHH
Q 046958 329 NNLLMQIQADLL---GSPVLRPADI-ESTALGAAFAAG 362 (417)
Q Consensus 329 s~~~~q~~Adv~---g~pv~~~~~~-e~salGaAllA~ 362 (417)
|+.+++.+++.+ +.++.+++.+ -.+|+|||++|.
T Consensus 236 n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 236 NPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 999999999999 7888888755 499999999874
No 26
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.85 E-value=5e-05 Score=73.13 Aligned_cols=78 Identities=22% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEE-ccCC-CC
Q 046958 274 TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVL-RPAD-IE 351 (417)
Q Consensus 274 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~-~~~~-~e 351 (417)
....+++|++++++++++-++..++..+ +. -+.|+++||.++|+.+.+.+.+.++++|. ++.. ..
T Consensus 210 ~~G~~~edI~aGl~~sia~rv~~~~~~~----~i---------~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~ 276 (293)
T TIGR03192 210 KAGYTKNMVIAAYCQAMAERVVSLLERI----GV---------EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQI 276 (293)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHhccc----CC---------CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccH
Confidence 3467899999999999998765554432 33 25699999999999999999999999998 4443 45
Q ss_pred hhHHHHHHHHHHh
Q 046958 352 STALGAAFAAGLA 364 (417)
Q Consensus 352 ~salGaAllA~~~ 364 (417)
.+|+|||++|...
T Consensus 277 ~GAlGAAL~A~~~ 289 (293)
T TIGR03192 277 AGALGAALFGYTL 289 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999643
No 27
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.64 E-value=0.00013 Score=72.53 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-----CCcEEcc
Q 046958 273 ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-----GSPVLRP 347 (417)
Q Consensus 273 l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-----g~pv~~~ 347 (417)
+....+++|++.+++++|+-++...+..+. +. .+.|+++||.++|+.+.+.+.+.+ +.+|.++
T Consensus 350 la~G~~reDIaAGL~~SIA~Rv~s~l~r~~---~i---------~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp 417 (432)
T TIGR02259 350 LALGDKREDILAGLHRAIILRAISIISRSG---GI---------TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINID 417 (432)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHhccc---CC---------CCCEEEECCccccHHHHHHHHHHHccccCCCeEecC
Confidence 344678999999999999998877766543 22 357999999999999999999999 5788887
Q ss_pred CCCC-hhHHHHHHHH
Q 046958 348 ADIE-STALGAAFAA 361 (417)
Q Consensus 348 ~~~e-~salGaAllA 361 (417)
+..+ .+|+|||+.|
T Consensus 418 ~~pq~~GALGAAL~a 432 (432)
T TIGR02259 418 PDSIYTGALGASEFA 432 (432)
T ss_pred CCccHHHHHHHHHhC
Confidence 7654 8899999875
No 28
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.62 E-value=0.0031 Score=60.71 Aligned_cols=161 Identities=18% Similarity=0.059 Sum_probs=98.1
Q ss_pred ceEEeccCcceeeeecCcceeccCCCceeeeceecCCCC-Cch-hhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccC
Q 046958 178 EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKA-PTN-YALEDSLGIISNASEIEELALRVNSTGGIYFVRAFN 255 (417)
Q Consensus 178 ~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~-~~~-~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~ 255 (417)
-+++++||+.-+..+..+ . . -..-|... .+. +-|-..+....+++++.+++++-...+-=+.+..++
T Consensus 103 ~llvnIGsGvSi~~v~~~-~-~---------~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIY 171 (279)
T TIGR00555 103 YLLVNIGTGTSILYVDGD-N-Y---------ERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIY 171 (279)
T ss_pred eEEEEecCCeEEEEEcCc-c-E---------EEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCccccccccccc
Confidence 388999999776654421 1 0 01111111 122 223244433478999999998642111112244555
Q ss_pred CCC--CCCCCCCCceEEEc-C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-
Q 046958 256 GLL--APWWRDDARSVCIG-I-----TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA- 326 (417)
Q Consensus 256 Ger--~P~~~~~~rg~~~G-l-----~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~- 326 (417)
|.. .+.-..+.-++-+| + ....+++|++++++..|+.++-++--..... .. +++|++.||.
T Consensus 172 g~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~--~~--------~~~IvF~Gg~L 241 (279)
T TIGR00555 172 GGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALR--YN--------IDRIVFIGSFL 241 (279)
T ss_pred CCCCCCCCCCcceeeeccchhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCeEEEECCcc
Confidence 521 11223455566667 3 3456799999999999999886654332221 23 7899999995
Q ss_pred cccHHHHHHHHHhhC---CcEEccCC-CChhHHHHHH
Q 046958 327 TVNNLLMQIQADLLG---SPVLRPAD-IESTALGAAF 359 (417)
Q Consensus 327 a~s~~~~q~~Adv~g---~pv~~~~~-~e~salGaAl 359 (417)
..|+.+++.++..+. ..+..++. .-.+|+|||+
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 242 RNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 568999999999886 44566664 4489999986
No 29
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.56 E-value=0.00028 Score=70.75 Aligned_cols=75 Identities=27% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCC-hh
Q 046958 275 RFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIE-ST 353 (417)
Q Consensus 275 ~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e-~s 353 (417)
...+++|++++++.+|+-++... .+++ .+. -+.|+++||.++|+.+.+.+.+.+|.++.+++.++ .+
T Consensus 326 ~G~~~eDIaAGl~~SIa~rv~~~--l~~~-~~i---------~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~G 393 (404)
T TIGR03286 326 EGASPEDVAAAACHSVAEQVYEQ--QLQE-IDV---------REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIG 393 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--Hhhc-CCC---------CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHH
Confidence 35789999999999999888642 1222 232 25699999999999999999999999999988766 89
Q ss_pred HHHHHHHH
Q 046958 354 ALGAAFAA 361 (417)
Q Consensus 354 alGaAllA 361 (417)
|+|||++|
T Consensus 394 AiGAAL~A 401 (404)
T TIGR03286 394 AVGAALLA 401 (404)
T ss_pred HHHHHHHh
Confidence 99999987
No 30
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.40 E-value=0.00044 Score=67.94 Aligned_cols=108 Identities=23% Similarity=0.347 Sum_probs=77.4
Q ss_pred hhcCCCCcHHHHHHHHHhcCCCCCeEEccccCCCCCCCCCCCCceEEEc-------CCCCCCHHHHHHHHHHHHHHHHHH
Q 046958 224 DSLGIISNASEIEELALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIG-------ITRFTSKAHFARAVLESMCFLVKD 296 (417)
Q Consensus 224 ~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~G-------l~~~~~~~~l~rAvlEgia~~~~~ 296 (417)
+.|+. +.+++.+++..... | .+-+.++..|+ +....+++++..++.++++-++..
T Consensus 273 ~~Lgv--~v~E~~~~A~~~~~---------------~-v~i~S~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~ 334 (396)
T COG1924 273 RRLGV--DVEELGKLALKATP---------------P-VKINSRCAVFAESEVISALAEGASPEDILAGLAYSVAENVAE 334 (396)
T ss_pred HHhCC--CHHHHHHHHhcCCC---------------C-cccCCeeEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 55664 67888887765311 1 01223344443 234578999999999999877654
Q ss_pred HHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccCCCC-hhHHHHHHHHH
Q 046958 297 VLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPADIE-STALGAAFAAG 362 (417)
Q Consensus 297 ~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e-~salGaAllA~ 362 (417)
- .+++ .+ ++ .|++.||.+.|..+...+.+.++++|.+++..+ ..|+|||++|-
T Consensus 335 ~--~~~~---~~--------i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 335 K--VIKR---VD--------IEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred H--Hhhc---cC--------CCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHh
Confidence 1 2322 22 33 399999999999999999999999999988655 89999999885
No 31
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.31 E-value=0.00069 Score=64.43 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-Cc----EEccC
Q 046958 274 TRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SP----VLRPA 348 (417)
Q Consensus 274 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~p----v~~~~ 348 (417)
....++++++.++.++++-++...+..+ +.. -++|+++||.++|+.+.+.+.+.++ .+ |.+++
T Consensus 181 ~~G~~~edI~aGl~~sia~r~~~~~~~~----~~~--------~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~ 248 (262)
T TIGR02261 181 SRGISAPNILKGIHESMADRLAKLLKSL----GAL--------DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHP 248 (262)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHhcc----CCC--------CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCC
Confidence 3467899999999999999876665544 222 2469999999999999999999994 23 33333
Q ss_pred C-CChhHHHHHHHH
Q 046958 349 D-IESTALGAAFAA 361 (417)
Q Consensus 349 ~-~e~salGaAllA 361 (417)
. ....|+|||++|
T Consensus 249 ~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 249 DAIYAGAIGAALWG 262 (262)
T ss_pred cchHHHHHHHHHcC
Confidence 3 348899999974
No 32
>CHL00094 dnaK heat shock protein 70
Probab=97.23 E-value=0.00083 Score=72.28 Aligned_cols=53 Identities=28% Similarity=0.281 Sum_probs=46.2
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCCCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGVFK 369 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~~~ 369 (417)
++.|+++||.+|.|.+.++++++||.++.. .+..|+.|+|||+.|+...|.++
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 329 IDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 889999999999999999999999987655 34567999999999998877543
No 33
>PRK13410 molecular chaperone DnaK; Provisional
Probab=97.15 E-value=0.0018 Score=70.09 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=45.5
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGVF 368 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~~ 368 (417)
++.|+++||++|.|.+.+++.++|+.++.. .+..|+.|+|||+.|+...+..
T Consensus 329 Id~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~ 381 (668)
T PRK13410 329 IDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGEL 381 (668)
T ss_pred CcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccc
Confidence 889999999999999999999999986554 4567899999999999876643
No 34
>PLN02920 pantothenate kinase 1
Probab=96.94 E-value=0.034 Score=55.63 Aligned_cols=165 Identities=15% Similarity=0.022 Sum_probs=99.5
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCC--CchhhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEcccc
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKA--PTNYALEDSLGIISNASEIEELALRVNSTGGIYFVRAF 254 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~--~~~~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l 254 (417)
.-+++++||+.-+..+..+. . +-.+-|... ...|-|-..+-...+|+++.++|++-...+-=+.+-.+
T Consensus 166 PyLLVNIGSGVSilkV~~~~-------~---~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDI 235 (398)
T PLN02920 166 PYLLVNIGSGVSMIKVDGDG-------K---FERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDI 235 (398)
T ss_pred ceEEEEcCCCEEEEEEeCCC-------c---EEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccc
Confidence 35889999997665544311 0 111112111 12233434443357899999998853211111335666
Q ss_pred CCCC---CCCCCCCCceEEEc--CCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEec
Q 046958 255 NGLL---APWWRDDARSVCIG--ITR-----FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDG 324 (417)
Q Consensus 255 ~Ger---~P~~~~~~rg~~~G--l~~-----~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~G 324 (417)
.|.. .+.-..+.-++-+| ... +.+++|++|+++--|..++-++--...+. .. +++|++.|
T Consensus 236 YGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~--~~--------ik~Ivf~G 305 (398)
T PLN02920 236 YGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALR--FG--------LKRIFFGG 305 (398)
T ss_pred cCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEEe
Confidence 6532 22234555566666 321 35699999999999999998775443332 33 88999999
Q ss_pred CccccH-HHHHHHHHhhC------CcEEccC-CCChhHHHHHHHH
Q 046958 325 GATVNN-LLMQIQADLLG------SPVLRPA-DIESTALGAAFAA 361 (417)
Q Consensus 325 G~a~s~-~~~q~~Adv~g------~pv~~~~-~~e~salGaAllA 361 (417)
+..+++ ..++.++-... +....+. ..-.+|+||++..
T Consensus 306 ~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 306 FFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred ecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 999976 77776666553 3333444 4558999997754
No 35
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.77 E-value=0.0027 Score=60.05 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhHHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTALGAAF 359 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~salGaAl 359 (417)
++....++.+.-.++..++ + .+ ++.|+++||+++.+.+.+.+.+.|+.||.++.. .+++|+|+|+
T Consensus 173 ~~i~~~~~~i~~~i~~~l~---~---~~--------~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIE---G---QG--------VKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CC--------CCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 4455555555555554443 2 23 689999999999999999999999999998664 5699999986
No 36
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.71 E-value=0.0051 Score=59.09 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=40.9
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaAllA 361 (417)
++.|+++||+++.+.+.+++++.||.||+++..+ ..+++|+|+.+
T Consensus 222 ~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 222 VEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 7899999999999999999999999999997765 59999999853
No 37
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.68 E-value=0.0052 Score=66.26 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTAL 355 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~sal 355 (417)
-+|.+| ..+++.+.-.+...++..-+..+.. ...++.|+++||.+|.|.+.+++.+.||.++.. .+..++.|+
T Consensus 293 itR~~f-e~l~~~l~~~~~~~i~~~l~~a~~~-----~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~ 366 (627)
T PRK00290 293 LTRAKF-EELTEDLVERTIEPCKQALKDAGLS-----VSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAI 366 (627)
T ss_pred ECHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC-----hhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHH
Confidence 466665 3334444444444443322223432 123889999999999999999999999987665 456789999
Q ss_pred HHHHHHHHhcCC
Q 046958 356 GAAFAAGLAIGV 367 (417)
Q Consensus 356 GaAllA~~~~G~ 367 (417)
|||+.|+.-.|.
T Consensus 367 GAa~~aa~l~~~ 378 (627)
T PRK00290 367 GAAIQGGVLAGD 378 (627)
T ss_pred hHHHHHHHhcCC
Confidence 999999876654
No 38
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.68 E-value=0.006 Score=65.95 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCceEEEecCccccHHHHHHHHHhhCC-cEEccCCCChhHHHHHHHHHHhcCC
Q 046958 316 PEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 316 ~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~~e~salGaAllA~~~~G~ 367 (417)
.++.|+++||.+|-|.+.+++.+.|+. |+...+..|+.|+|||+.|+.-.+.
T Consensus 353 dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 353 EINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred hCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc
Confidence 388999999999999999999999997 4555667899999999999876653
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.61 E-value=0.0055 Score=65.60 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=43.3
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G 366 (417)
++.|.++||++|.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+
T Consensus 329 i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred cceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcc
Confidence 789999999999999999999999987766 45678999999999987665
No 40
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.53 E-value=0.0071 Score=64.84 Aligned_cols=85 Identities=22% Similarity=0.233 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTAL 355 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~sal 355 (417)
-++.+| ..+++.+.-.+...++..-+..+.. ...++.|+++||.+|.|.+.+++.+.||.++.. .+..++.|+
T Consensus 291 itr~~f-e~l~~~l~~~~~~~i~~~l~~a~~~-----~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~ 364 (595)
T TIGR02350 291 LTRAKF-EELTADLVERTKEPVRQALKDAGLS-----ASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAI 364 (595)
T ss_pred EeHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC-----HhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHH
Confidence 456665 3444444444444444332223432 123789999999999999999999999977665 456789999
Q ss_pred HHHHHHHHhcCC
Q 046958 356 GAAFAAGLAIGV 367 (417)
Q Consensus 356 GaAllA~~~~G~ 367 (417)
|||+.|+.-.+.
T Consensus 365 GAa~~aa~l~~~ 376 (595)
T TIGR02350 365 GAAIQGGVLKGD 376 (595)
T ss_pred HHHHHHHHhcCC
Confidence 999999876554
No 41
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.45 E-value=0.0089 Score=64.29 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=44.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~ 367 (417)
++.|+++||.+|.|.+.+++++.||.++.. .+..++.|+|||+.|+.-.+.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~ 380 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGN 380 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999976544 456789999999999876553
No 42
>PLN03184 chloroplast Hsp70; Provisional
Probab=96.41 E-value=0.013 Score=63.74 Aligned_cols=51 Identities=27% Similarity=0.212 Sum_probs=45.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~ 367 (417)
++.|+++||.+|.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC
Confidence 899999999999999999999999987655 567889999999999876654
No 43
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.38 E-value=0.011 Score=63.35 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDS-KQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTA 354 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~-l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~sa 354 (417)
-|+.+| ..+++.+.-.+...++. |++ .+.. ...++.|+++||+++.|.+.+++.+.|+.++.. .+..++.|
T Consensus 279 itr~ef-e~l~~~ll~~i~~~i~~~L~~-a~~~-----~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA 351 (599)
T TIGR01991 279 LTRDEF-EALIQPLVQKTLSICRRALRD-AGLS-----VEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVA 351 (599)
T ss_pred EeHHHH-HHHHHHHHHHHHHHHHHHHHH-cCCC-----hhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHH
Confidence 466665 33344444444443333 332 3432 123889999999999999999999999976554 45678999
Q ss_pred HHHHHHHHHhcC
Q 046958 355 LGAAFAAGLAIG 366 (417)
Q Consensus 355 lGaAllA~~~~G 366 (417)
+|||+.|+.-.+
T Consensus 352 ~GAai~a~~l~~ 363 (599)
T TIGR01991 352 LGAAIQADLLAG 363 (599)
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
No 44
>PRK11678 putative chaperone; Provisional
Probab=96.36 E-value=0.021 Score=59.06 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-CcEEccCCCC
Q 046958 273 ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SPVLRPADIE 351 (417)
Q Consensus 273 l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~~~~~e 351 (417)
+...-++.++ ..+++.+.-.+...++..-+..+.. ++.|+++||.++.|.+.+++.+.|+ .|+...+.-+
T Consensus 365 ~~~~ItR~ef-e~ii~~~l~ri~~~i~~~L~~a~~~--------~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~ 435 (450)
T PRK11678 365 LATEISQQGL-EEAISQPLARILELVQLALDQAQVK--------PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFG 435 (450)
T ss_pred cceeeCHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC--------CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcc
Confidence 3444567766 3445556666666655544335666 7899999999999999999999996 6888888889
Q ss_pred hhHHHHHHHHHH
Q 046958 352 STALGAAFAAGL 363 (417)
Q Consensus 352 ~salGaAllA~~ 363 (417)
+.|.|+|+.|..
T Consensus 436 sVa~Gla~~a~~ 447 (450)
T PRK11678 436 SVTAGLARWAQV 447 (450)
T ss_pred hHHHHHHHHHHh
Confidence 999999998854
No 45
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.35 E-value=0.018 Score=61.63 Aligned_cols=50 Identities=22% Similarity=0.101 Sum_probs=44.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G 366 (417)
++.|+++||.+|.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999987665 45678999999999987544
No 46
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=96.32 E-value=0.0087 Score=59.42 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAA 358 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaA 358 (417)
+++...++.+.-.++..++........+ .++ .|+++||+++-+.+.+++++.|+.||.+.. ..++.|+|||
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~~~~-------~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa 318 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPELSAD-------IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTG 318 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccHh-------hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHH
Confidence 3344455555555555554432100011 144 699999999999999999999999999876 5679999999
Q ss_pred HHHHH
Q 046958 359 FAAGL 363 (417)
Q Consensus 359 llA~~ 363 (417)
+++..
T Consensus 319 ~~~~~ 323 (336)
T PRK13928 319 KMLEN 323 (336)
T ss_pred HHHhc
Confidence 99754
No 47
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=96.22 E-value=0.048 Score=54.57 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC-cEEccCC-----CC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPAD-----IE 351 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~-----~e 351 (417)
+++|+++.+.|-.|.++.+.++.+.. + +++|+++|||++|+.+++.+...+.. +|...+. .-
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~~----~--------~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~ 325 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFPP----Q--------PDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDA 325 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-T----T---------EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCC----C--------CceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHH
Confidence 69999999999999998888877643 3 68999999999999999999998865 7876431 22
Q ss_pred hhHHHHHHHHHHhc-CCCCCHHH
Q 046958 352 STALGAAFAAGLAI-GVFKEEEI 373 (417)
Q Consensus 352 ~salGaAllA~~~~-G~~~~~~~ 373 (417)
--|+.-|+||...+ |.-.++..
T Consensus 326 ~EA~aFA~La~~~~~g~~~~lp~ 348 (364)
T PF03702_consen 326 KEAMAFAWLAYRRLNGLPNNLPS 348 (364)
T ss_dssp HHHHHHHHHHHHHHCT---S-HH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCc
Confidence 34666677776654 33333433
No 48
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=96.17 E-value=0.021 Score=57.03 Aligned_cols=76 Identities=24% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC--CChh-
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD--IEST- 353 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~--~e~s- 353 (417)
.+++|+++-+.|-.|.++.+.+..+. .. .++|+++|||++|+.+++.+...+..+|...+. -..-
T Consensus 259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~--------~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da 326 (365)
T PRK09585 259 LSPEDVQATLTELTAASIARAVRRLP----PG--------PDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDA 326 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc----CC--------CCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhH
Confidence 48999999999999988888876543 22 568999999999999999999999756665443 2223
Q ss_pred --HHHHHHHHHHh
Q 046958 354 --ALGAAFAAGLA 364 (417)
Q Consensus 354 --alGaAllA~~~ 364 (417)
|+.-|++|...
T Consensus 327 ~EA~aFA~La~~~ 339 (365)
T PRK09585 327 KEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 44445555444
No 49
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=96.10 E-value=0.012 Score=63.86 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=44.7
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~ 367 (417)
++.|+++||.++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+.-.+.
T Consensus 368 i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 368 LNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC
Confidence 799999999999999999999999987654 456789999999999876553
No 50
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=95.88 E-value=0.053 Score=53.86 Aligned_cols=164 Identities=18% Similarity=0.063 Sum_probs=91.9
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCch--hhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEcccc
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTN--YALEDSLGIISNASEIEELALRVNSTGGIYFVRAF 254 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l 254 (417)
.-+++++||+..+..+.++.. +..+-|....++ |-|-..+--..+|+++.++|++-...+-=+.+..+
T Consensus 157 PyllvniGsGvSi~~v~~~~~----------~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DI 226 (341)
T PF03630_consen 157 PYLLVNIGSGVSILKVEGPNQ----------FERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDI 226 (341)
T ss_dssp SEEEEEESSSEEEEEEEETTE----------EEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHH
T ss_pred cEEEEEcCCceEEEEEeCCCc----------eEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeec
Confidence 468899999876655442111 111111111122 33333332246899999998763211111334455
Q ss_pred CCCC--CCCCCCCCceEEEcC-C------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 255 NGLL--APWWRDDARSVCIGI-T------RFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 255 ~Ger--~P~~~~~~rg~~~Gl-~------~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
.|.. .+.-..+.-++-+|- . ...+++|++++++.-|+.++-++.-...+..+ +++|+++|.
T Consensus 227 yg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~----------~~~I~f~G~ 296 (341)
T PF03630_consen 227 YGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHG----------VKRIVFGGS 296 (341)
T ss_dssp HSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT------------EEEEESG
T ss_pred cCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEEec
Confidence 5544 222234555555552 1 13468999999999999999887655444333 789999999
Q ss_pred ccc-cHHHHHHHH---HhhC---CcEEccC-CCChhHHHHHHH
Q 046958 326 ATV-NNLLMQIQA---DLLG---SPVLRPA-DIESTALGAAFA 360 (417)
Q Consensus 326 ~a~-s~~~~q~~A---dv~g---~pv~~~~-~~e~salGaAll 360 (417)
..+ ++..++.++ +-+. .....+. ..-.+|+||.+.
T Consensus 297 ~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 297 FIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp GGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 987 578889998 4442 3344444 556999999874
No 51
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=95.77 E-value=0.023 Score=56.23 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAA 358 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaA 358 (417)
+++...++++.-.++..++......... .++ .|+++||+++-+.+.+.+.+.++.||.+.. ..++.|+|||
T Consensus 247 e~i~~~~~~i~~~i~~~l~~~~~~~~~~-------~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~ 319 (334)
T PRK13927 247 EALQEPLSAIVEAVKVALEQTPPELAAD-------IVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTG 319 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhhhh-------hhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHH
Confidence 3444455555555555554432100011 023 499999999999999999999999999875 5668999999
Q ss_pred HHHHH
Q 046958 359 FAAGL 363 (417)
Q Consensus 359 llA~~ 363 (417)
+++..
T Consensus 320 ~~~~~ 324 (334)
T PRK13927 320 KALEN 324 (334)
T ss_pred HHHhh
Confidence 99865
No 52
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.68 E-value=0.029 Score=60.78 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=43.4
Q ss_pred CceEEEecCccccHHHHHHHHHhhC-CcE-EccCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLG-SPV-LRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g-~pv-~~~~~~e~salGaAllA~~~~G 366 (417)
++.|.++||.+|.|.+.+++.+.|+ .++ ...+..|+.|+|||+.|+.-.+
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 7899999999999999999999996 455 4456788999999999987655
No 53
>PLN02902 pantothenate kinase
Probab=95.64 E-value=0.35 Score=53.05 Aligned_cols=164 Identities=13% Similarity=0.034 Sum_probs=99.4
Q ss_pred ceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCc--hhhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccC
Q 046958 178 EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPT--NYALEDSLGIISNASEIEELALRVNSTGGIYFVRAFN 255 (417)
Q Consensus 178 ~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~--~~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~ 255 (417)
-+++++||+.-+..+.+.. . +-.+-|....+ .|-|-..+--..+|+++-++|++-...+-=+.+-.++
T Consensus 216 yLLVNIGSGVSilkV~~~~-------~---~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDllVgDIY 285 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDGDG-------K---FERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIY 285 (876)
T ss_pred eEEEEcCCceEEEEEecCC-------c---EEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCeeecccc
Confidence 4889999997665544211 1 11221211112 2333344433578999999987632222113446666
Q ss_pred CCC---CCCCCCCCceEEEc--CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 256 GLL---APWWRDDARSVCIG--IT-----RFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 256 Ger---~P~~~~~~rg~~~G--l~-----~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
|.. .+.-..+.-++-+| .. .+.+++|++++++--|.+++-++--...+. .. +++|++.|.
T Consensus 286 Gg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~--~~--------ikrIvF~G~ 355 (876)
T PLN02902 286 GGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALR--FG--------LKRIFFGGF 355 (876)
T ss_pred CCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEecc
Confidence 632 11223444455555 21 135699999999999999998875444442 33 889999999
Q ss_pred ccc-cHHHHHHHHHhhC------CcEEccC-CCChhHHHHHHHH
Q 046958 326 ATV-NNLLMQIQADLLG------SPVLRPA-DIESTALGAAFAA 361 (417)
Q Consensus 326 ~a~-s~~~~q~~Adv~g------~pv~~~~-~~e~salGaAllA 361 (417)
..+ ++.-|+.++-.+. +....+. ....+|+||.+..
T Consensus 356 fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~ 399 (876)
T PLN02902 356 FIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY 399 (876)
T ss_pred eecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence 987 6788888887664 3344444 4558999998654
No 54
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=95.64 E-value=0.025 Score=55.99 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=40.3
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHHHHHHH
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAAFAAGL 363 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaAllA~~ 363 (417)
.|+++||+++-|.+.+.+++.|+.||.+.. ..++.|+|||+++..
T Consensus 282 ~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 699999999999999999999999999876 567899999998643
No 55
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.62 E-value=0.03 Score=60.68 Aligned_cols=85 Identities=24% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-CcEEc-cCCCChhH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SPVLR-PADIESTA 354 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~~-~~~~e~sa 354 (417)
-+|.+| ..+++.+.-.+...++..-+..+.. ...++.|+++||.+|.|.+.+++.+.|+ .++.. .+..++.|
T Consensus 294 itR~~f-e~l~~~l~~~~~~~i~~~L~~a~~~-----~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA 367 (653)
T PRK13411 294 LTRAKF-EELTKDLVEATIEPMQQALKDAGLK-----PEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVA 367 (653)
T ss_pred EcHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC-----HHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHH
Confidence 466665 3344444444333333322223432 1227899999999999999999999997 55544 46678999
Q ss_pred HHHHHHHHHhcCC
Q 046958 355 LGAAFAAGLAIGV 367 (417)
Q Consensus 355 lGaAllA~~~~G~ 367 (417)
+|||+.|+.-.+.
T Consensus 368 ~GAAi~aa~l~~~ 380 (653)
T PRK13411 368 LGAAIQAGVLGGE 380 (653)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999876554
No 56
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.046 Score=57.75 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHH
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAA 358 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaA 358 (417)
+++...+++=+-.-+...+.... +...+ +..|=++||.+|.|...+++++.||++..+ ++..|+.|+|||
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~-l~~ed--------i~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~A 376 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAK-LKVED--------IHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAA 376 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-Ccccc--------ceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHH
Confidence 44455666666555555555422 12334 788999999999999999999999999987 457899999999
Q ss_pred HHHHHhc
Q 046958 359 FAAGLAI 365 (417)
Q Consensus 359 llA~~~~ 365 (417)
|.+|.-.
T Consensus 377 LqcAIlS 383 (727)
T KOG0103|consen 377 LQCAILS 383 (727)
T ss_pred HHHHhcC
Confidence 9887643
No 57
>PRK14878 UGMP family protein; Provisional
Probab=95.21 E-value=0.1 Score=51.58 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCCCChh
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPADIEST 353 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~~e~s 353 (417)
.++.++.+++.+.++-.+-+..+...+..| +++|+++||.++|..+++.+.+.+ |.+|.+++..-++
T Consensus 212 ~~~~diAa~fq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~ 281 (323)
T PRK14878 212 ERLEDVCYSLRETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAG 281 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCc
Confidence 457899999999998888888777765444 678999999999999999999988 8888887643333
Q ss_pred HHHHHH
Q 046958 354 ALGAAF 359 (417)
Q Consensus 354 alGaAl 359 (417)
--|+++
T Consensus 282 D~GimI 287 (323)
T PRK14878 282 DNGAMI 287 (323)
T ss_pred hHHHHH
Confidence 333333
No 58
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=95.20 E-value=0.035 Score=54.89 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=39.9
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccC-CCChhHHHHHHHHHH
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPA-DIESTALGAAFAAGL 363 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~-~~e~salGaAllA~~ 363 (417)
.|+++||+++-+.+.+.+++.++.|+.+.. ..++.++|||+.+..
T Consensus 283 ~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred CEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 399999999999999999999999999875 456889999998753
No 59
>PRK09604 UGMP family protein; Validated
Probab=95.04 E-value=0.11 Score=51.53 Aligned_cols=82 Identities=24% Similarity=0.199 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC----
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD---- 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~---- 349 (417)
.++.++.+++.+.++-.+.+.++...+.++ +++|+++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 225 ~~~~~iA~s~q~~l~~~l~~~~~~~~~~~~----------~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~ 294 (332)
T PRK09604 225 QTKADIAASFQAAVVDVLVIKTKRALKQTG----------VKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCT 294 (332)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCc
Confidence 347899999999999888888877755344 678999999999999999999998 788888653
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 046958 350 IESTALGAAFAAGLAIGVF 368 (417)
Q Consensus 350 ~e~salGaAllA~~~~G~~ 368 (417)
..+.++|+|-+-..-.|..
T Consensus 295 D~gisIg~ag~~~~~~g~~ 313 (332)
T PRK09604 295 DNAAMIAAAGYERLKAGEF 313 (332)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3455666665544445543
No 60
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=94.70 E-value=0.16 Score=51.04 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCc-EEccC--CC
Q 046958 277 TSKAHFA---RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSP-VLRPA--DI 350 (417)
Q Consensus 277 ~~~~~l~---rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~p-v~~~~--~~ 350 (417)
....|++ +..+|-+.. +.++.+.+.+|.+ +.|.++||.+-|-..++.+++-.+.. |.+++ ..
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~---~~~~~~~~~~g~~---------~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD 200 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVL---HLVRHLLERTGID---------NNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGD 200 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHH---HHHHHHHHHHT-----------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSG
T ss_pred chHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCC---------CeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCC
Confidence 3566675 555555554 4444444445632 34999999999999999999997754 77755 35
Q ss_pred ChhHHHHHHHHHHhcCC
Q 046958 351 ESTALGAAFAAGLAIGV 367 (417)
Q Consensus 351 e~salGaAllA~~~~G~ 367 (417)
++.++|||+.+....+.
T Consensus 201 ~G~aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 201 AGLAIGAALYAWHELGG 217 (360)
T ss_dssp GGHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHhcC
Confidence 69999999999877654
No 61
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.67 E-value=0.18 Score=48.34 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHH-----HHhhCCcEEccC-CCChhH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQ-----ADLLGSPVLRPA-DIESTA 354 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~-----Adv~g~pv~~~~-~~e~sa 354 (417)
.....|++..+..+...+..+.+..+.. -..|+++||.++|..+.+-+ ..+...|+.++. ....++
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~--------~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a 264 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPE--------KEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPA 264 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCC--------CCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHH
Confidence 3456677777777777666665433322 22399999999997776655 555566666654 456899
Q ss_pred HHHHHHH
Q 046958 355 LGAAFAA 361 (417)
Q Consensus 355 lGaAllA 361 (417)
+|||++|
T Consensus 265 ~GAallA 271 (271)
T PF01869_consen 265 YGAALLA 271 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999987
No 62
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.18 Score=49.84 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh-CCcEE
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL-GSPVL 345 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv~ 345 (417)
.+.+|+.+.+.|-.+-.+-..+..+ ... .+++++||||.+|+++|+.+|..+ |.+|.
T Consensus 263 l~a~Dv~aTL~eltA~tIv~s~~~~----~~~--------p~~l~vcGGG~~N~llm~rLa~l~~g~~V~ 320 (371)
T COG2377 263 LNAEDVQATLVELTAATIVKSVATL----QGD--------PRRLVVCGGGRRNPLLMARLAALLEGVEVA 320 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhc----cCC--------CceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence 4789999999998888776666522 234 689999999999999999999999 54555
No 63
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=94.53 E-value=0.096 Score=57.13 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC---CcEEccC----C
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG---SPVLRPA----D 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g---~pv~~~~----~ 349 (417)
.+++++.+++.+.++-.+...++.+.+..+ ++.|+++||.++|..+++.+.+.+. ..|..+. .
T Consensus 629 ~~~~~IAa~fh~tla~~L~~~a~~~~~~~g----------~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~n 698 (711)
T TIGR00143 629 EDRSKIAHIAHKFVASGLVEIATAIAVPFG----------IHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPG 698 (711)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCC
Confidence 457788888888888888777777655344 6789999999999999999998875 6776643 3
Q ss_pred CChhHHHHHHHHH
Q 046958 350 IESTALGAAFAAG 362 (417)
Q Consensus 350 ~e~salGaAllA~ 362 (417)
..+.++|.|++|+
T Consensus 699 DgGislGQa~~a~ 711 (711)
T TIGR00143 699 DGGISLGQAVAAA 711 (711)
T ss_pred HHHHHHHHHHHhC
Confidence 4578888887763
No 64
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=94.37 E-value=0.12 Score=51.43 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=38.9
Q ss_pred Cc-eEEEecCccccHHHHHHHHHhhCCcEEcc-CCCChhHHHHHHH
Q 046958 317 EF-VLRVDGGATVNNLLMQIQADLLGSPVLRP-ADIESTALGAAFA 360 (417)
Q Consensus 317 ~~-~i~~~GG~a~s~~~~q~~Adv~g~pv~~~-~~~e~salGaAll 360 (417)
++ .|+++||+|+-+.+.+.+++.++.||.+. +..++.++||++.
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 45 59999999999999999999999999986 4556889999887
No 65
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.02 E-value=0.21 Score=51.17 Aligned_cols=79 Identities=19% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC-------
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKD---AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA------- 348 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~---~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~------- 348 (417)
..+++++-+|.+.-.+++.++.+.+. .|.. ...+..|+++||+|+-+.+.++++++|+.||.+..
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~-----~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~ 367 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVK-----HHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGL 367 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----ccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCC
Confidence 45567777777777777766554332 1211 11267799999999999999999999999999732
Q ss_pred ------CCChhHHHHHHHHH
Q 046958 349 ------DIESTALGAAFAAG 362 (417)
Q Consensus 349 ------~~e~salGaAllA~ 362 (417)
...++++|.++.+.
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhh
Confidence 23356666666543
No 66
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=93.95 E-value=0.16 Score=50.49 Aligned_cols=62 Identities=15% Similarity=0.030 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAV-EKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD 349 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~ 349 (417)
.++++..++-++-+++..++-+....+ .. ++.|+++||+++-+-+...++..||.||++.+.
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~--------i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNS--------LDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcc--------cceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 356889999999999888877653222 23 899999999999999999999999999998653
No 67
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.22 Score=53.24 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCCceEEEecCccccHHHHHHHHHhhCCcEEc-cCCCChhHHHHHHHHHHhcCCCC
Q 046958 315 KPEFVLRVDGGATVNNLLMQIQADLLGSPVLR-PADIESTALGAAFAAGLAIGVFK 369 (417)
Q Consensus 315 ~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~-~~~~e~salGaAllA~~~~G~~~ 369 (417)
..++.|.++||.+|-|...+.+++.|+++... ++..|+.|+|||+.|+.-.|...
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc
Confidence 44899999999999999999999999966665 56788999999999998777543
No 68
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=93.75 E-value=0.18 Score=50.10 Aligned_cols=62 Identities=23% Similarity=0.189 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccC
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKD-AVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPA 348 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~ 348 (417)
..+.++..++-++-+++..++-+... .+.+ +++|+++||+++-+-+.+.+++.||.||++.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~--------i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGES--------IERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------CCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 45778999999999999999976542 2444 99999999999999999999999999999865
No 69
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=93.68 E-value=0.4 Score=47.18 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD 349 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~ 349 (417)
++.++.+++.+.++..+.+.++...+.++ +++|.++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~----------~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTG----------LKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 46899999999999998888877765344 678999999999999999999998 888888654
No 70
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=93.54 E-value=0.087 Score=52.03 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=35.8
Q ss_pred ceEEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHHHHH
Q 046958 318 FVLRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 318 ~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaAllA 361 (417)
+-|+++||+|+-+-+-+.+++-++.||.+.+.+ .+.+.|+..+.
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 349999999999999999999999999998854 58888887643
No 71
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=93.52 E-value=0.5 Score=47.01 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD 349 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~ 349 (417)
+.++.+++.|.++-.+...++..-+..+ +++|+++||.+.|..+++.+.+.. +.+++.++.
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~~----------~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~ 299 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHCG----------SNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDE 299 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCCh
Confidence 5689999999988887666655443233 678999999999999999999887 778888764
No 72
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.48 E-value=0.74 Score=44.19 Aligned_cols=193 Identities=18% Similarity=0.120 Sum_probs=97.2
Q ss_pred EeccchHHHhHhcCcC-CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhh----------hhcC
Q 046958 159 SGCLGNQHAAMLGQAC-KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALE----------DSLG 227 (417)
Q Consensus 159 ~~g~~D~~aa~lg~g~-~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~----------~~~~ 227 (417)
+.-..|...++.+.-. +.+-+++..||++.-+..-++ -.....|-| .+.+|..+...|.-. +-+.
T Consensus 102 ~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~D-Gs~~~~ggw---g~~iGd~GSaywia~~Avq~vfda~dg~e 177 (336)
T KOG1794|consen 102 FYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPD-GSEKGAGGW---GHMIGDGGSAYWIARQAVQMVFDAEDGFE 177 (336)
T ss_pred eeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCC-CCccCCCCC---CCccCCCcchhhhhhhhhhheeehhcCcc
Confidence 4455788777766555 677788999999865543321 111222223 344554333334321 1111
Q ss_pred CC-CcHHHHHHHHHhc-CCCCCeEEccccCCCCCCCCCC-------CCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046958 228 II-SNASEIEELALRV-NSTGGIYFVRAFNGLLAPWWRD-------DARSVCIGITRFTSKAHFARAVLESMCFLVKDVL 298 (417)
Q Consensus 228 ~~-~~~~~l~~~a~~~-~~~~gl~flP~l~Ger~P~~~~-------~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~ 298 (417)
.. ...+.+.+.+-+. .-.+-+-.+++++ +-|.|.. -++..-.| +.-.+.++|-.=|-++..++..+
T Consensus 178 ~~~~~i~~v~~tif~~~~l~d~l~ml~~~Y--s~f~k~riA~f~~kla~~ae~G---d~~~~~ifr~Ag~~Lg~~V~aVl 252 (336)
T KOG1794|consen 178 NMMDKIKDVKQTIFKHFNLRDRLQMLEHLY--SDFDKHRIALFTEKLAEHAEIG---DPLSAEIFRNAGETLGRHVVAVL 252 (336)
T ss_pred cccchHHHHHHHHHHHcCCCCHHHHHHHHH--hcchHHHHHHHHHHHHhhhhcc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1122333333322 2233444556653 1121100 01111122 11124455555566666666665
Q ss_pred HHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHH-hhCC----cEEccCCCChhHHHHHHHHHHhcCC
Q 046958 299 DSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQAD-LLGS----PVLRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 299 ~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Ad-v~g~----pv~~~~~~e~salGaAllA~~~~G~ 367 (417)
..+.. ...+ . ..-.|+..||..+ ++.|++=+-+ +.+. .++....++++|+|||++|+.-.+.
T Consensus 253 ~~l~~-~~k~-----g-~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~~ 320 (336)
T KOG1794|consen 253 PQLPP-TLKK-----G-KTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDNI 320 (336)
T ss_pred hhcCc-hhcc-----c-CcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhccc
Confidence 55433 1111 1 1346899999976 6888774433 3332 2666667899999999999987764
No 73
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.22 Score=49.76 Aligned_cols=54 Identities=26% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCCCceEEEecCccccHHHHHHHHHhh-CCcE-EccCCCChhHHHHHHHHHHhcCC
Q 046958 314 AKPEFVLRVDGGATVNNLLMQIQADLL-GSPV-LRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 314 ~~~~~~i~~~GG~a~s~~~~q~~Adv~-g~pv-~~~~~~e~salGaAllA~~~~G~ 367 (417)
.+++..|+++||.+|-|-..|++-+.| |+.- .=....|+.|.|||..|++-.|.
T Consensus 360 KsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 360 KSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred cccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 345899999999999999999999999 4443 33567899999999999987765
No 74
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=93.18 E-value=0.41 Score=47.28 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHh---hCCcEEccCC
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADL---LGSPVLRPAD 349 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv---~g~pv~~~~~ 349 (417)
.++.++.+++.+.++-.+.+..+...+.+| +++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 213 ~~~~diAasfq~~l~~~l~~~a~~~~~~~g----------~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 213 ARLEDVCYSLQETAFAMLVEVTERALAHTG----------KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 347899999999999888888877766444 67899999999999999999995 4677887554
No 75
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=92.82 E-value=0.55 Score=49.66 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC----CC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA----DI 350 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~----~~ 350 (417)
+..++.+++.+.++..+.+.++...+.+| +++|+++||.+.|..+++.+.+.+ +.+|.+++ ..
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g----------~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D 286 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTG----------KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGD 286 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccc
Confidence 46789999999999888888777655444 678999999999999999999766 77888865 24
Q ss_pred ChhHHHHHHHHHH
Q 046958 351 ESTALGAAFAAGL 363 (417)
Q Consensus 351 e~salGaAllA~~ 363 (417)
.+.++|+|.....
T Consensus 287 ~g~~ia~a~~~~~ 299 (535)
T PRK09605 287 NGAMIAWLGLLMY 299 (535)
T ss_pred hHHHHHHHHHHHH
Confidence 5777777765443
No 76
>PTZ00297 pantothenate kinase; Provisional
Probab=92.26 E-value=4.6 Score=47.81 Aligned_cols=75 Identities=16% Similarity=0.076 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHHhhC------CcEEccC-
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQADLLG------SPVLRPA- 348 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Adv~g------~pv~~~~- 348 (417)
.+.+|++|+++--|..++-++--...+. .. +++|++.|+..+ |+..|+.++..+. +....+.
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~--~~--------~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~h 1431 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRV--QG--------VPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEH 1431 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecC
Confidence 3589999999999999998775433332 34 889999999654 8999999998874 4445554
Q ss_pred CCChhHHHHHHHH
Q 046958 349 DIESTALGAAFAA 361 (417)
Q Consensus 349 ~~e~salGaAllA 361 (417)
....+|+||++..
T Consensus 1432 egy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1432 DGYLGALGCATLD 1444 (1452)
T ss_pred ccccHHhhhhhcC
Confidence 4568999999864
No 77
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.49 Score=49.22 Aligned_cols=76 Identities=24% Similarity=0.191 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHH-HHHHHhhCCcEEccC--CCChhHH
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLM-QIQADLLGSPVLRPA--DIESTAL 355 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~-q~~Adv~g~pv~~~~--~~e~sal 355 (417)
.+..+++.+|.+...+...+.. .+| ..+|..+||.+.|-.++ +++...+...|.+.+ ...+.|+
T Consensus 261 iAasaQ~~lE~l~l~~~~~~~~---~~g----------~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~Av 327 (555)
T COG2192 261 IAASAQAYLEELVLEMLRYLRE---ETG----------EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAV 327 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhC----------ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHH
Confidence 3444678899988876555433 244 46899999999999999 899999999998865 3568999
Q ss_pred HHHHHHHHhcCC
Q 046958 356 GAAFAAGLAIGV 367 (417)
Q Consensus 356 GaAllA~~~~G~ 367 (417)
|||+.+..-.+.
T Consensus 328 GAAl~~~~~~~~ 339 (555)
T COG2192 328 GAALAVKRELGG 339 (555)
T ss_pred HHHHHHHHHhcC
Confidence 999998776543
No 78
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=91.11 E-value=0.42 Score=48.07 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=29.7
Q ss_pred Cce-EEEecCccccHHHHHHHHHhhCCcEEccCC
Q 046958 317 EFV-LRVDGGATVNNLLMQIQADLLGSPVLRPAD 349 (417)
Q Consensus 317 ~~~-i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~ 349 (417)
+.. |+++||+++-+.+.+++.+.|+.||++...
T Consensus 314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred CCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 555 999999999999999999999999988653
No 79
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=91.00 E-value=0.78 Score=44.93 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPA 348 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~ 348 (417)
++.++.+++.+.++..+-+.++...+.+| +++|.++||.+.|..+++.+.+.+ +.++.+++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g----------~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTG----------PKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 47889999999998888888777665444 678999999999999999998888 66777765
No 80
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.83 E-value=0.56 Score=46.29 Aligned_cols=79 Identities=25% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh----CCcEEccCC----CChh
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL----GSPVLRPAD----IEST 353 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~----g~pv~~~~~----~e~s 353 (417)
-+.+.+|+++-.++..+-. .. + ++.|+++|-.++++.+...+.+.| +.++..... ...+
T Consensus 239 a~ea~~E~i~k~V~~l~~~----~~-~--------~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKea 305 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLAS----VP-D--------PDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEA 305 (343)
T ss_pred HHHHHHHHHHHHHHHHhcc----cC-C--------CCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhh
Confidence 4677888887776644322 22 3 678999999999988776555555 445554432 2449
Q ss_pred HHHHHHHHH-HhcCCCCCHHH
Q 046958 354 ALGAAFAAG-LAIGVFKEEEI 373 (417)
Q Consensus 354 alGaAllA~-~~~G~~~~~~~ 373 (417)
|.|+|++|- .+-|.|+++=+
T Consensus 306 A~GaAiIA~glaGG~~~~lv~ 326 (343)
T PF07318_consen 306 AQGAAIIANGLAGGRYKELVD 326 (343)
T ss_pred hhhHHHHhhhhhcccHHHHHH
Confidence 999999984 34455554433
No 81
>PRK03011 butyrate kinase; Provisional
Probab=90.62 E-value=13 Score=37.21 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC--CcEEccCC-C--ChhHHH
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG--SPVLRPAD-I--ESTALG 356 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g--~pv~~~~~-~--e~salG 356 (417)
.++.+++-+++.+...+-.+....+-+ ++.|+++||.++++.+++.+.+-+. .||.+... . ++.++|
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~G 340 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEG 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHH
Confidence 456788888888888887776544224 7899999999999888877766665 36666432 2 355666
Q ss_pred HHH
Q 046958 357 AAF 359 (417)
Q Consensus 357 aAl 359 (417)
|+.
T Consensus 341 A~r 343 (358)
T PRK03011 341 ALR 343 (358)
T ss_pred HHH
Confidence 443
No 82
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=2.3 Score=42.03 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---CCcEEccCC
Q 046958 278 SKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---GSPVLRPAD 349 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---g~pv~~~~~ 349 (417)
+++++..+.-|.+.-.+....++.-+..+ .++++++||.+.|..+++++.... |..++.++.
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~rAl~~~~----------~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~ 297 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTERALKHTG----------KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL 297 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh
Confidence 46778888888887777666655444344 678999999999999999998866 445777653
No 83
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=90.02 E-value=0.77 Score=44.47 Aligned_cols=70 Identities=19% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC--ccccH-HHHHHHHHhhCCcEEccCCCChhHHHHHH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG--ATVNN-LLMQIQADLLGSPVLRPADIESTALGAAF 359 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG--~a~s~-~~~q~~Adv~g~pv~~~~~~e~salGaAl 359 (417)
++++.++++.++..++-. + .+ ...|+++|. .++++ .+...+.+.|+.+|.+... +.+|.|+|+
T Consensus 242 ~dal~~~vameIasLl~l--~---~~--------~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~Ai 307 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL--D---CK--------EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLAL 307 (326)
T ss_pred HHHHHHHHHHHHHhheec--c---CC--------CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHH
Confidence 567777777777655422 1 12 457999997 78898 9999999999999999865 779999999
Q ss_pred HHHHhcC
Q 046958 360 AAGLAIG 366 (417)
Q Consensus 360 lA~~~~G 366 (417)
+|---.|
T Consensus 308 IA~dI~g 314 (326)
T TIGR03281 308 IAEDIFS 314 (326)
T ss_pred HHHHHhC
Confidence 9964433
No 84
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=0.62 Score=49.51 Aligned_cols=75 Identities=25% Similarity=0.226 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEc--cCCCChhHHHH
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLR--PADIESTALGA 357 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~--~~~~e~salGa 357 (417)
.++++..+|-+.-.+++.. + +.+++..|+++||.++-|.+.+++.|.|+..-.. ....|+.|+||
T Consensus 311 ~dlf~~~~~~v~~~L~da~--~-----------dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GA 377 (620)
T KOG0101|consen 311 ADLFRSTLEPVEKALKDAK--L-----------DKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGA 377 (620)
T ss_pred hHHHHHHHHHHHHHHHhhc--c-----------CccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhH
Confidence 5666777776663332221 1 1234899999999999999999999999853332 34578999999
Q ss_pred HHHHHHhcCC
Q 046958 358 AFAAGLAIGV 367 (417)
Q Consensus 358 AllA~~~~G~ 367 (417)
|+.|+.-.|.
T Consensus 378 avqaa~~~g~ 387 (620)
T KOG0101|consen 378 AVQAAILSGD 387 (620)
T ss_pred HHHhhhccCC
Confidence 9999988774
No 85
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=88.21 E-value=1.8 Score=41.43 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC--CcEEccC
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG--SPVLRPA 348 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g--~pv~~~~ 348 (417)
.-++-++++++|++..-|-.+.....-+ ++.|+++||.++++.++..+.+-+. .||.+.+
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~--------vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~P 330 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGK--------VDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYP 330 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCC--------CCEEEEecchhhHHHHHHHHHHHHhhhcceEecC
Confidence 3456678889999888777766544445 8999999999999999999999887 6777744
No 86
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=2.7 Score=45.18 Aligned_cols=77 Identities=22% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC---cEE----ccC
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS---PVL----RPA 348 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~---pv~----~~~ 348 (417)
..+++.++.+...++|-.+..++..+.+..| +++|.++||..+|+.+++-+++.+.. .+. ++.
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~g----------i~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~ 732 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKKYG----------INKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPA 732 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCC
Confidence 3567778778788888877778777776445 78999999999999999999999974 233 344
Q ss_pred CCChhHHHHHHHHH
Q 046958 349 DIESTALGAAFAAG 362 (417)
Q Consensus 349 ~~e~salGaAllA~ 362 (417)
...+-++|=|++|+
T Consensus 733 ~DggIslGQ~v~~~ 746 (750)
T COG0068 733 GDGGISLGQAVAAA 746 (750)
T ss_pred CCCceeHHHHHHHH
Confidence 45577899888873
No 87
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=0.7 Score=47.90 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCC-cEEccCCCChhH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGS-PVLRPADIESTA 354 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~~e~sa 354 (417)
..|++.+=.-+--=|+-.+..+...|.. .+.. .+++++|.+.||++|-|-..+.+.++||+ |-.-+...|++|
T Consensus 319 ~~tr~efe~~v~~lI~Rti~p~~~aL~d-A~~~-----~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava 392 (640)
T KOG0102|consen 319 ELTRGEFEELVPSLIARTIEPCKKALRD-ASLS-----SSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVA 392 (640)
T ss_pred eecHHHHHHhhHHHHHhhhhHHHHHHHh-ccCC-----hhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhc
Confidence 3455554333333333444455555553 2321 23489999999999999999999999985 444566789999
Q ss_pred HHHHHHHHHhcCCCCC
Q 046958 355 LGAAFAAGLAIGVFKE 370 (417)
Q Consensus 355 lGaAllA~~~~G~~~~ 370 (417)
+|||+.+++-.|..+|
T Consensus 393 ~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 393 GGAAIQGGVLSGEVKD 408 (640)
T ss_pred cchhhccchhhccccc
Confidence 9999999887776654
No 88
>PRK00976 hypothetical protein; Provisional
Probab=86.54 E-value=4.4 Score=39.94 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=35.0
Q ss_pred CceEEEecCccccH--HHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcC
Q 046958 317 EFVLRVDGGATVNN--LLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 317 ~~~i~~~GG~a~s~--~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G 366 (417)
++.|++.||.++.+ .+.+.+.+.+..++... ..+++++|||++|..-.+
T Consensus 264 Pe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 264 EDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGLALIARDIFN 314 (326)
T ss_pred CCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHHHHHHHHHhC
Confidence 67899999999876 56666666665443222 468999999999976543
No 89
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=84.37 E-value=8.5 Score=36.56 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=83.8
Q ss_pred chHHHhHhcCcC--CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHHH
Q 046958 163 GNQHAAMLGQAC--KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELAL 240 (417)
Q Consensus 163 ~D~~aa~lg~g~--~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a~ 240 (417)
.|-.++++|+.- ...-+++..||+..+..+... +. |.-|.-.||... +.+.|.+.+.
T Consensus 107 ~DR~~n~vaA~~~~~~~~vVVD~GTA~Tid~v~~~-------~~-----~lGG~I~PGi~l---------~~~aL~~~aa 165 (251)
T COG1521 107 ADRIANAVAAYHKYGKAVVVVDFGTATTIDLVDEG-------GR-----YLGGAILPGITL---------SFEALFARAA 165 (251)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcCCeEEEEEEcCC-------Cc-----EeeeEeccCHHH---------HHHHHHHHHh
Confidence 499999999877 333688999999877654421 21 111111244322 1222323333
Q ss_pred hcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceE
Q 046958 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVL 320 (417)
Q Consensus 241 ~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 320 (417)
+.| .+.-.+.+ .+.| ..|.+.+...++-|.++.++..++.+++..+. -..+
T Consensus 166 ~lp---------~~~~~~~~--------~~~g---k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~---------~~~~ 216 (251)
T COG1521 166 KLP---------RVEIARPE--------SVPG---KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKG---------GDAV 216 (251)
T ss_pred cCC---------cccccCcc--------ccCC---cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCC---------CCeE
Confidence 333 22111111 2233 46899999999999999999999999876543 4689
Q ss_pred EEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHH
Q 046958 321 RVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362 (417)
Q Consensus 321 ~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~ 362 (417)
+++||.++ ++.+.+. .+ +.+ ..-+..|-+.++.
T Consensus 217 vltGg~~~------~~~~~~~-~~-~~d-~~Ltl~Gl~~i~~ 249 (251)
T COG1521 217 VLTGGLAK------LLLDELD-ID-IFD-PNLTLLGLALLLA 249 (251)
T ss_pred EEeCCchH------hhhhhcc-cc-eeC-cchhHHHHHHHhh
Confidence 99999885 3444444 22 222 3347777776653
No 90
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=83.99 E-value=9.7 Score=37.38 Aligned_cols=160 Identities=18% Similarity=0.057 Sum_probs=89.5
Q ss_pred ceEEeccCcceeeeecCcceeccCCCceeeeceecCCCC-Cch-hhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccC
Q 046958 178 EAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKA-PTN-YALEDSLGIISNASEIEELALRVNSTGGIYFVRAFN 255 (417)
Q Consensus 178 ~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~-~~~-~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~ 255 (417)
-+.+++||+--+..+.++.. |-.+-|... .+. |-|...+---++|+|+-++|.+-...+-=+++-...
T Consensus 176 yLLVNIGSGVSIlkV~~~~~----------feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIY 245 (371)
T KOG2201|consen 176 YLLVNIGSGVSILKVDGPDN----------FERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIY 245 (371)
T ss_pred eEEEEcCCCeEEEEEecCCc----------eeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhcc
Confidence 47889999865555443111 111112111 122 333333322368898888887632111113344444
Q ss_pred CCCCCCCCCCCceE----EEc------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 256 GLLAPWWRDDARSV----CIG------ITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 256 Ger~P~~~~~~rg~----~~G------l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
|-. |......|. =+| -....+++|++||+|--|..++-++.-.... ... +++|+..|-
T Consensus 246 Gg~--y~~fGL~~~~iASSFGk~~~~eK~~~~s~eDia~SlL~mIsnNIGqiAyl~A~--~~n--------i~rV~FgG~ 313 (371)
T KOG2201|consen 246 GGD--YSRFGLKGDLIASSFGKVIRKEKELSVSKEDIARSLLRMISNNIGQIAYLCAL--NEN--------IKRVYFGGF 313 (371)
T ss_pred Ccc--HhhcCCChhHHHHHHHHHhhcccccccChHHHHHHHHHHHHhhHHHHHHHHHH--HhC--------ccEEEEeee
Confidence 433 222222211 111 1234789999999999999999887543332 344 899999999
Q ss_pred ccc-cHHHHHHHHHhhCC----cEE--cc-CCCChhHHHHHH
Q 046958 326 ATV-NNLLMQIQADLLGS----PVL--RP-ADIESTALGAAF 359 (417)
Q Consensus 326 ~a~-s~~~~q~~Adv~g~----pv~--~~-~~~e~salGaAl 359 (417)
..| ++.-|..+|=..+- .++ .. .+..-+|+||-+
T Consensus 314 fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYlGalGAfL 355 (371)
T KOG2201|consen 314 FIRGHPITMKTLSYAINFWSKGELKALFLRHEGYLGALGAFL 355 (371)
T ss_pred EEecCceehHHHHHHHHHhccchHHhHhhhccchhHHHHHHh
Confidence 988 78888988877652 111 12 234467777766
No 91
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=80.12 E-value=5 Score=37.89 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=50.2
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHhhccccccccCCCCCceEEEecCcc-ccHHHHHHHHHhh-
Q 046958 271 IGITRFTSKAHFARAVLESMCFLVKD--------VLDSKQKDAVEKGVIKDAKPEFVLRVDGGAT-VNNLLMQIQADLL- 340 (417)
Q Consensus 271 ~Gl~~~~~~~~l~rAvlEgia~~~~~--------~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~~Adv~- 340 (417)
+|+..+.....++|.|.+.|.-.... ++..+.+..+.+ ...-.|-+.|+.- +.|.+.+.+.+.+
T Consensus 138 ~~~~~t~~d~~~lr~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~------~~~v~VavDGSv~~~~p~f~~~l~~~l~ 211 (243)
T PF03727_consen 138 FGLPPTEEDRQILRRICEAVSTRAARLVAAAIAAILNKIRENKGRP------RREVTVAVDGSVYEKYPNFRERLQEALD 211 (243)
T ss_dssp TTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCS------SEEEEEEEESHHHHHSTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccccc------CCceEEEEeCcceeeCHHHHHHHHHHHH
Confidence 34544333445567777776554332 333333211211 0012355567764 5677666655544
Q ss_pred ---C---CcEEccCCCChhHHHHHHHHHHhc
Q 046958 341 ---G---SPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 341 ---g---~pv~~~~~~e~salGaAllA~~~~ 365 (417)
+ .+|+.....|++.+|||++|+.+.
T Consensus 212 ~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 212 ELLPEEGCKVEFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp HHSTT-CEEEEEEE-SSTHHHHHHHHHHHHH
T ss_pred HhcccccceEEEEEecCchHHHHHHHHHHhc
Confidence 3 477777788999999999999863
No 92
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=79.89 E-value=5.6 Score=41.16 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=54.0
Q ss_pred EEcCCCCC-CHHHHHHHHHHHHHHHHHHH----HHHHHhhccccccccCCCCCceEEE-ecCccc-cHHHHHHHHHhhC-
Q 046958 270 CIGITRFT-SKAHFARAVLESMCFLVKDV----LDSKQKDAVEKGVIKDAKPEFVLRV-DGGATV-NNLLMQIQADLLG- 341 (417)
Q Consensus 270 ~~Gl~~~~-~~~~l~rAvlEgia~~~~~~----~~~l~~~~g~~~~~~~~~~~~~i~~-~GG~a~-s~~~~q~~Adv~g- 341 (417)
.+|+...+ ....+++.+++.|+-.-.+. +..+-+..|.. ...+.++. .|+.-+ .|.+.+.+...+.
T Consensus 366 ~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~------~~~~~~VgvdGsly~~yP~f~~~m~~~l~e 439 (474)
T KOG1369|consen 366 LLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGEL------SRKRVTVGVDGSLYKNHPFFREYLKEALRE 439 (474)
T ss_pred hhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc------ccCceEEEeccchhHcCchHHHHHHHHHHH
Confidence 35665433 33577888888887654332 22221112311 00123333 344444 5777776665554
Q ss_pred -----CcEEccCCCChhHHHHHHHHHHhcC
Q 046958 342 -----SPVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 342 -----~pv~~~~~~e~salGaAllA~~~~G 366 (417)
..|.+....+++.+|||++|+++..
T Consensus 440 Llg~~~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 440 LLGPSIHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred HhCCCceEEEEECCCCccccHHHHHHHHhh
Confidence 5677778899999999999998864
No 93
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=74.97 E-value=4.8 Score=43.55 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=43.1
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCc-EE-ccCCCChhHHHHHHHHHHhcCCC
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSP-VL-RPADIESTALGAAFAAGLAIGVF 368 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~p-v~-~~~~~e~salGaAllA~~~~G~~ 368 (417)
|+.|++.||++|-|....++.+..+.. +- -++..|++++||++-|+.-..-|
T Consensus 365 In~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 365 INQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred hheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 889999999999999999999998865 22 35678999999999998765443
No 94
>PRK09557 fructokinase; Reviewed
Probab=71.72 E-value=20 Score=34.61 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh---------CCcEEccC-CCCh
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL---------GSPVLRPA-DIES 352 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~---------g~pv~~~~-~~e~ 352 (417)
++.+++-.+..+...+-.+... .+ ++.|++.||.++.+.+...+-..+ ..+|.... ..++
T Consensus 221 a~~~l~~~~~~La~~l~~l~~~--ld--------P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a 290 (301)
T PRK09557 221 AELAFRRYEDRLAKSLAHVINI--LD--------PDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSS 290 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCch
Confidence 4555665555555555555432 34 678888888877654443222222 22344443 3567
Q ss_pred hHHHHHHHH
Q 046958 353 TALGAAFAA 361 (417)
Q Consensus 353 salGaAllA 361 (417)
+++|||+++
T Consensus 291 ~~~GAa~~~ 299 (301)
T PRK09557 291 GVRGAAWLW 299 (301)
T ss_pred hhhhhhHhh
Confidence 889999865
No 95
>PTZ00107 hexokinase; Provisional
Probab=71.36 E-value=19 Score=37.52 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=51.9
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHH----HhhC
Q 046958 271 IGITRFTSKAHFARAVLESMCFLVKDVL----DSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQA----DLLG 341 (417)
Q Consensus 271 ~Gl~~~~~~~~l~rAvlEgia~~~~~~~----~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~A----dv~g 341 (417)
.|+........++|-|++.|...-..+. -.+-+..+.. ...-.|-+.|+.-+ .|.+.+.+. ++++
T Consensus 361 ~~~~~~~~d~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~------~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~ 434 (464)
T PTZ00107 361 WDVDLTDEDLYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV------QGKATVAIDGSVYVKNPWFRRLLQEYINSILG 434 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCceEEEEeCcceecCccHHHHHHHHHHHHhC
Confidence 3444433344556777777665543332 1121112321 00345777788864 665555444 4443
Q ss_pred ---CcEEccCCCChhHHHHHHHHHHhc
Q 046958 342 ---SPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 342 ---~pv~~~~~~e~salGaAllA~~~~ 365 (417)
.+|.+....+++.+|||++||.+.
T Consensus 435 ~~~~~v~l~~a~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 435 PDAGNVVFYLADDGSGKGAAIIAAMVA 461 (464)
T ss_pred CCCCcEEEEEccCchHHHHHHHHHHhc
Confidence 467877788999999999999874
No 96
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=71.36 E-value=16 Score=37.30 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cccccccCCCCCceEEEecCcc-ccHHHHHHHHHhhC-CcEEc
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDA-VEKGVIKDAKPEFVLRVDGGAT-VNNLLMQIQADLLG-SPVLR 346 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~~Adv~g-~pv~~ 346 (417)
++-++|.++|+++..+-.|-... | . ++.|+++||.. +++.+++.+.+-+. .-|++
T Consensus 298 A~lA~d~f~yri~k~Iga~~a~L~g-~--------vDaiVfTGGIgE~s~~lr~~I~~~l~~lGi~l 355 (402)
T PRK00180 298 AKLALDVFVYRLAKYIGSYAAALNG-R--------LDAIVFTAGIGENSALVREKVLEGLEFLGIEL 355 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-C--------CCEEEEcCccccCCHHHHHHHHhhhhhcCeee
Confidence 34588999999999888876544 4 3 89999999998 78999888877664 33444
No 97
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.27 E-value=15 Score=36.09 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC
Q 046958 279 KAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD 349 (417)
Q Consensus 279 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~ 349 (417)
....++-+++.+..++++.++-+-...+.. +++.|+++||+++-.-+-+++.+-++.|+++.+.
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~-------~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMV-------DIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccc-------eeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 457789999999999999998876433322 3899999999999999999999999999999764
No 98
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=68.92 E-value=19 Score=36.63 Aligned_cols=55 Identities=7% Similarity=0.000 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcc-ccHHHHHHHHHhhC-CcEEc
Q 046958 284 RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGAT-VNNLLMQIQADLLG-SPVLR 346 (417)
Q Consensus 284 rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~~Adv~g-~pv~~ 346 (417)
+-++|..+|+++..+-.+....+-. ++.|+++||.. .++.+++.+.+-++ .-|++
T Consensus 303 ~lA~~~f~yri~k~Iga~~a~L~G~--------vDaiVFTGGIGEns~~vr~~i~~~l~~lGi~l 359 (404)
T TIGR00016 303 QLAIKMYVHRIAKYIGSYIASLEGN--------LDAIVFTGGIGENAATVRELVLEALEFLGFEL 359 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcCccccCCHHHHHHHHhhhhhcCcee
Confidence 4588999999999988876544434 78999999999 68888887777664 33443
No 99
>PLN02914 hexokinase
Probab=68.23 E-value=21 Score=37.43 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=33.7
Q ss_pred ceEEEecCcc-ccHHHHHHHH----HhhC----CcEEccCCCChhHHHHHHHHHHhc
Q 046958 318 FVLRVDGGAT-VNNLLMQIQA----DLLG----SPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 318 ~~i~~~GG~a-~s~~~~q~~A----dv~g----~pv~~~~~~e~salGaAllA~~~~ 365 (417)
-.|-+.|+.- +.|.+.+.+. .++| .+|++....+++.+|||++||.+.
T Consensus 432 ~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 432 TVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred EEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhh
Confidence 3566778885 4665555444 4443 357777788999999999999764
No 100
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=67.89 E-value=32 Score=33.27 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC---------CcEEccC-CCC
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG---------SPVLRPA-DIE 351 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g---------~pv~~~~-~~e 351 (417)
..+.+++-.+..+...+-.+... .+ ++.|++.|+.++.+.+.+.+...+. .+|.... ..+
T Consensus 221 ~a~~~~~~~~~~la~~l~n~~~~--ld--------P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~ 290 (303)
T PRK13310 221 QAVAHVERYLDLLAICLGNILTI--VD--------PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDA 290 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--cC--------CCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCch
Confidence 34555555555555555555432 34 6788887777765544443333322 1244443 356
Q ss_pred hhHHHHHHHHH
Q 046958 352 STALGAAFAAG 362 (417)
Q Consensus 352 ~salGaAllA~ 362 (417)
++++|||.++.
T Consensus 291 a~~~GAa~~~l 301 (303)
T PRK13310 291 GGVRGAAFLHL 301 (303)
T ss_pred HHHHhHHHHhh
Confidence 78899998874
No 101
>PRK12440 acetate kinase; Reviewed
Probab=66.34 E-value=20 Score=36.37 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHH-HHHHHHHhhC
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNL-LMQIQADLLG 341 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~-~~q~~Adv~g 341 (417)
++-+++..+|+++..+-.+.-..+ . ++.|+++||...|.. +++.+.+-++
T Consensus 296 A~lA~d~f~yri~k~Ig~~~a~l~-g--------vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 296 ATLAFEVFTYRVAKYIASYLAALD-S--------LDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCccccCcHHHHHHHHhhhh
Confidence 345889999999999888765555 4 899999999998766 7777766654
No 102
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=65.55 E-value=27 Score=33.49 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhh--CCcEEccC
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLL--GSPVLRPA 348 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~--g~pv~~~~ 348 (417)
.++.+++.+.++-.+...+....+. .. ++.|.++||.+.|..+++.+.+.. +.++..++
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~a~~~--~~--------~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPRALEK--PR--------AKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HT--------CSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hc--------ccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 5566667777666655555443221 23 789999999999999999876544 66666665
No 103
>PRK13328 pantothenate kinase; Reviewed
Probab=64.75 E-value=39 Score=32.13 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
.+|...+...++.|++-.+..+++.+++..+.+ -.|+++||.+ ++++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~---------~~vi~TGGda------~~l~~~l~~~~~~--~p~LvL~ 245 (255)
T PRK13328 183 DDTPDAISAGCLAAQAGLIERAWRDLAARWQAP---------VRLVLSGGAA------DAVAPALTVPHTR--HDNLVLL 245 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCH------HHHHhhCCCCCEE--CCCcHHH
Confidence 468899999999999999999999988755533 4799999997 4667777776665 2457888
Q ss_pred HHHHHHHH
Q 046958 356 GAAFAAGL 363 (417)
Q Consensus 356 GaAllA~~ 363 (417)
|-+.++..
T Consensus 246 GL~~i~~~ 253 (255)
T PRK13328 246 GLALIAAA 253 (255)
T ss_pred HHHHHHhh
Confidence 88776643
No 104
>PRK13329 pantothenate kinase; Reviewed
Probab=64.35 E-value=43 Score=31.74 Aligned_cols=140 Identities=12% Similarity=0.059 Sum_probs=87.5
Q ss_pred chHHHhHhcCcC--CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHHH
Q 046958 163 GNQHAAMLGQAC--KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELAL 240 (417)
Q Consensus 163 ~D~~aa~lg~g~--~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a~ 240 (417)
.|-.++++|+.. ...-+++.+||...+-++.. .|.+.. .++ .||.-.. ++.|.+..+
T Consensus 104 ~DR~~a~vaA~~~~~~~~lViD~GTA~TiD~v~~-------~g~~lG-G~I----~PGl~l~---------~~aL~~~Ta 162 (249)
T PRK13329 104 ADRWVALIGARHGPARPCLVVMVGTAVTVDALDA-------DGEFLG-GLI----LPGHGLM---------LRALESGTA 162 (249)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCceeEEEEcC-------CCcEEE-EEE----CcCHHHH---------HHHHHhhhh
Confidence 599999999876 44567889999987765432 121100 111 2443221 222333333
Q ss_pred hcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceE
Q 046958 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVL 320 (417)
Q Consensus 241 ~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 320 (417)
+.| ...++. ..+| ..|...|...++.|++..+..+++.+++..+.+ -.|
T Consensus 163 ~Lp---------~~~~~~----------~~~g---~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~---------~~v 211 (249)
T PRK13329 163 GLH---------VPTGEV----------REFP---TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAE---------PEC 211 (249)
T ss_pred cCC---------CCCCcc----------ccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEE
Confidence 333 111110 1122 468899999999999999999999987654432 379
Q ss_pred EEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHH
Q 046958 321 RVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAG 362 (417)
Q Consensus 321 ~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~ 362 (417)
+++||.+ ++++..+..++.+. ++-...|-..++.
T Consensus 212 ilTGGda------~~l~~~l~~~~~~~--~~LvL~GL~~i~~ 245 (249)
T PRK13329 212 LLTGGAA------WKLAPSLTVPFELV--DNLVLDGLLVIAA 245 (249)
T ss_pred EEECCCH------HHHHhhcCCCCEEC--CCcHHHHHHHHHh
Confidence 9999997 56777778777663 4567777777664
No 105
>PRK07157 acetate kinase; Provisional
Probab=64.33 E-value=23 Score=36.04 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHH-HHHHHHHhhC-CcEEc
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNL-LMQIQADLLG-SPVLR 346 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~-~~q~~Adv~g-~pv~~ 346 (417)
++-++|..+|+++..+-.+--..+-. ++.|+++||...|.. +++.+.+-++ .-|++
T Consensus 295 A~lA~d~f~yri~k~Ig~~~a~L~G~--------vDaiVFTgGIGen~~~vr~~i~~~l~~lGi~l 352 (400)
T PRK07157 295 AKFALDLYAQKIVDYLANYINKIGKK--------IDAIVFTAGVGENSAFVRELVINKINIPNIKL 352 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEECCccccCcHHHHHHHHhhccccceEE
Confidence 34588999999999988876544434 889999999998766 7777776654 33444
No 106
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=64.29 E-value=36 Score=32.63 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHH-HHHHhhC------CcEEccC-CCChhH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQ-IQADLLG------SPVLRPA-DIESTA 354 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q-~~Adv~g------~pv~~~~-~~e~sa 354 (417)
++.+++-.+..+...+..+... .+ ++.|++.|+.+..+.+.+ +...+-. .+|.... ..++++
T Consensus 210 a~~~~~~~~~~la~~l~~l~~~--~d--------pe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~ 279 (291)
T PRK05082 210 AQALINRSAQAIARLIADLKAT--LD--------CQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGL 279 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhh
Confidence 4555666666666666555543 34 678888888776544433 3332221 2344444 356788
Q ss_pred HHHHHHHH
Q 046958 355 LGAAFAAG 362 (417)
Q Consensus 355 lGaAllA~ 362 (417)
+|||.++.
T Consensus 280 ~GAa~~~~ 287 (291)
T PRK05082 280 LGAALWAQ 287 (291)
T ss_pred hhHHHHhc
Confidence 99998863
No 107
>PRK07058 acetate kinase; Provisional
Probab=64.23 E-value=22 Score=36.09 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcc-ccHHHHHHHHHhhC
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGAT-VNNLLMQIQADLLG 341 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~~Adv~g 341 (417)
.+-++|..+|+++..+-.+....| . ++.|+++||.. .++.+++.+.+-+.
T Consensus 294 A~lA~d~f~yri~k~IGa~~a~Lg-~--------vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARLAATLG-G--------LDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCccccCcHHHHHHHHhhhh
Confidence 566899999999999988875555 4 89999999999 67888887777665
No 108
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=63.32 E-value=12 Score=36.34 Aligned_cols=73 Identities=23% Similarity=0.162 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCce--EEEecCccccHHHHHHHHHhhCCcEEccCC--CCh
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFV--LRVDGGATVNNLLMQIQADLLGSPVLRPAD--IES 352 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~--i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~--~e~ 352 (417)
.+..++.+++++-+...+.+.++.+....+.+ .+. +++.||++ +.+...+|+.+|.+..+++. .-.
T Consensus 207 ~~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~--------~~~~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~ 276 (290)
T PF01968_consen 207 LSVEEAAEGIVRIANENMADAIREVSVERGYD--------PRDFPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVA 276 (290)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEE------------------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------ccccccccccccc--ccccccccccccccccccccccccc
Confidence 35778888888888888887777763223544 344 44455555 78999999999998666443 457
Q ss_pred hHHHHHH
Q 046958 353 TALGAAF 359 (417)
Q Consensus 353 salGaAl 359 (417)
+|+|+++
T Consensus 277 ~A~Ga~~ 283 (290)
T PF01968_consen 277 NAIGAAV 283 (290)
T ss_dssp -------
T ss_pred ccccccc
Confidence 7788775
No 109
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=62.72 E-value=20 Score=32.94 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHHHHH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAAFAA 361 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaAllA 361 (417)
++-++|-+|--.+..++ +.. ++.+++.||.+--+-.-.++-.-|+++|+.+..+ ..+-+|.|+..
T Consensus 207 v~PV~eKMAeIv~~hie------~~~--------i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 207 VKPVYEKMAEIVARHIE------GQG--------ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred hhHHHHHHHHHHHHHhc------cCC--------CcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhcc
Confidence 46678888777766654 334 7899999999998999999999999999998754 47888887644
No 110
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=62.27 E-value=10 Score=37.27 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCce-EEEecCccccHHHHHHHHHhhCCcEEccCCC-ChhHHHHH
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFV-LRVDGGATVNNLLMQIQADLLGSPVLRPADI-ESTALGAA 358 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~-i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~-e~salGaA 358 (417)
+-++-.+++|.-++|..++..-...-.+ .+++ ++++||++.-.-+-+.+++-++.||.+.+.. .++|+|+.
T Consensus 254 eal~~~v~~Iveair~~Le~tpPeL~~D-------I~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G 326 (342)
T COG1077 254 EALEEPLNGIVEAIRLVLEKTPPELAAD-------IVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTG 326 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhccc-------HhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccc
Confidence 3345555666666666665532111111 2466 9999999998899999999999999997653 34444443
No 111
>PRK13327 pantothenate kinase; Reviewed
Probab=62.13 E-value=55 Score=30.91 Aligned_cols=142 Identities=18% Similarity=0.100 Sum_probs=86.5
Q ss_pred chHHHhHhcCcCCCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHHHhc
Q 046958 163 GNQHAAMLGQACKKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELALRV 242 (417)
Q Consensus 163 ~D~~aa~lg~g~~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a~~~ 242 (417)
.|-.++++|+-....-+++.+||...+-++.. .|.+. -.++ .||.-.. .+.|.+..++.
T Consensus 99 ~DR~~a~vaA~~~~~~lVVD~GTA~TiD~v~~-------~g~~l-GG~I----~PG~~lm---------~~aL~~~Ta~L 157 (242)
T PRK13327 99 VDRFLALLGARGDAPVLVVGVGTALTIDLLGA-------DGLHH-GGRI----AASPTTM---------REALHARAVQL 157 (242)
T ss_pred HHHHHHHHHhhcCCCEEEEEcCCceEEEEECC-------CCeEE-EEEE----CccHHHH---------HHHHHHhhccC
Confidence 59999999975444568899999987765542 12110 0111 2443221 12232222222
Q ss_pred CCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEE
Q 046958 243 NSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRV 322 (417)
Q Consensus 243 ~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~ 322 (417)
|...++. ..+| .+|...+...++.+++..+..+++.+++..+.+ -.|++
T Consensus 158 ---------p~~~~~~----------~~~g---~~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~---------~~vil 206 (242)
T PRK13327 158 ---------PASGGDY----------VEFA---NDTDDALTSGCDGAAVALIERSLQHAHRSLGQP---------VRLLV 206 (242)
T ss_pred ---------CCCcccc----------cccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEE
Confidence 3332221 1122 467889999999999999999999887755533 46999
Q ss_pred ecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhc
Q 046958 323 DGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAI 365 (417)
Q Consensus 323 ~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~ 365 (417)
+||.+ +++++.+.. ..+ .++-...|-+++|..+.
T Consensus 207 TGG~A------~~l~~~l~~-~~~--~p~LvL~GL~~~a~~~~ 240 (242)
T PRK13327 207 HGGGA------PPLLPLLPD-AEF--RPALVLDGLATWATAAA 240 (242)
T ss_pred ECCCH------HHHHHhCCC-CEE--ccCcHHHHHHHHHHhcc
Confidence 99997 345555533 222 35678889888887654
No 112
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=60.21 E-value=40 Score=32.74 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHHhhC----------CcEEccCC-C
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQADLLG----------SPVLRPAD-I 350 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Adv~g----------~pv~~~~~-~ 350 (417)
++.+++-.+..+...+..+... .+ ++.|++.|+.++ .+.+.+.+-..+. .+|..... .
T Consensus 228 a~~i~~~~~~~L~~~i~~~~~~--~d--------P~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~ 297 (318)
T TIGR00744 228 AVDSYREVARWAGAGLADLASL--FN--------PSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGN 297 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hC--------CCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCC
Confidence 4556666666666666665543 34 678888888776 3555444333221 23445443 5
Q ss_pred ChhHHHHHHHHH
Q 046958 351 ESTALGAAFAAG 362 (417)
Q Consensus 351 e~salGaAllA~ 362 (417)
+++++|||.++.
T Consensus 298 ~~~~~Gaa~~~~ 309 (318)
T TIGR00744 298 DAGLVGAADLAR 309 (318)
T ss_pred chhhHHHHHHHH
Confidence 678999998875
No 113
>PRK12379 propionate/acetate kinase; Provisional
Probab=59.86 E-value=34 Score=34.80 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcccc-HHHHHHHHHhhC
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVN-NLLMQIQADLLG 341 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~q~~Adv~g 341 (417)
++-++|..+|+++..+-.+--..+ . ++.|+++||...| ...++.+.+-+.
T Consensus 293 A~lA~d~f~yri~k~IGa~~a~L~-~--------vDaIVFTGGIGen~~~vR~~i~~~L~ 343 (396)
T PRK12379 293 AQLAIKTFVHRIARHIAGHAASLH-R--------LDGIIFTGGIGENSSLIRRLVMEHLA 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCccccCcHHHHHHHHhhhh
Confidence 345889999999999888775556 5 8999999999875 556666665543
No 114
>PLN02405 hexokinase
Probab=57.67 E-value=42 Score=35.23 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=52.6
Q ss_pred EcCCCCC-CHHHHHHHHHHHHHHHHHHHH-----HHHHhhccccccccCCCCCceEEEecCcc-ccHHHHHH----HHHh
Q 046958 271 IGITRFT-SKAHFARAVLESMCFLVKDVL-----DSKQKDAVEKGVIKDAKPEFVLRVDGGAT-VNNLLMQI----QADL 339 (417)
Q Consensus 271 ~Gl~~~~-~~~~l~rAvlEgia~~~~~~~-----~~l~~~~g~~~~~~~~~~~~~i~~~GG~a-~s~~~~q~----~Adv 339 (417)
+|+...+ ....++|-|++.|+..-..+. -.+.+ .|.............|-+.||.- +.|.+.+. +.++
T Consensus 382 l~~~~~~~~~~~~vr~i~~~V~~RAArL~Aa~iaail~k-~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~el 460 (497)
T PLN02405 382 LEIPNTSLKMRKVVVELCNIVATRGARLSAAGIYGILKK-LGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKEL 460 (497)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHH
Confidence 4554332 234567888887776543332 12222 23210000000023467778885 35655554 4445
Q ss_pred hC----CcEEccCCCChhHHHHHHHHHHhcC
Q 046958 340 LG----SPVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 340 ~g----~pv~~~~~~e~salGaAllA~~~~G 366 (417)
++ .+|.+...++++.+|||++|+.+..
T Consensus 461 l~~~~~~~v~l~~a~DGSGvGAAl~AA~~~~ 491 (497)
T PLN02405 461 LGEEVSESIEVEHSNDGSGIGAALLAASHSL 491 (497)
T ss_pred hCcccCceEEEEEecCchHHHHHHHHHHHhh
Confidence 54 3477777789999999999998853
No 115
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=56.34 E-value=71 Score=31.98 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC--CcEEccCC
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG--SPVLRPAD 349 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g--~pv~~~~~ 349 (417)
.++.+++-.++.+...+-.+....+-+ ++.|+++||.++|+.+++.+.+-+. .||.+.+.
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~--------pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGK--------VDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 356677777777777777666544224 6889999999998887777766665 78888653
No 116
>PRK13326 pantothenate kinase; Reviewed
Probab=56.26 E-value=65 Score=30.83 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=86.0
Q ss_pred cchHHHhHhcCcC-CC--CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHH
Q 046958 162 LGNQHAAMLGQAC-KK--GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEEL 238 (417)
Q Consensus 162 ~~D~~aa~lg~g~-~~--g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~ 238 (417)
+.|-.++++|+-. -+ .-+++.+||...+-++.. .|. |.-|...||.-. ..+.|.+.
T Consensus 109 GaDR~a~~vaA~~~~~~~~~iVID~GTA~T~D~V~~-------~g~-----~lGG~I~PGi~l---------~~~AL~~~ 167 (262)
T PRK13326 109 GSDVFANLVGAIEYYNINDALVVDLGTACTIFAVSR-------QDG-----ILGGLINGGPFT---------NLNALLDN 167 (262)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEECCCceEEEEEcC-------CCc-----EEEEEECccHHH---------HHHHHHHh
Confidence 3599999999866 33 468899999987765432 121 110111244322 12233333
Q ss_pred HHhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc
Q 046958 239 ALRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF 318 (417)
Q Consensus 239 a~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~ 318 (417)
.++.| .+.- ..|. ..+| ..|...|-..++.|.+..+..+++.+++..+.+ -
T Consensus 168 TA~Lp---------~v~l-~~p~-------~~iG---~nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~---------~ 218 (262)
T PRK13326 168 AYLLK---------DFNL-SVPK-------NLLG---LSTSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE---------F 218 (262)
T ss_pred HhcCC---------CCcc-CCCC-------cccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------C
Confidence 33332 2211 1120 1123 357889999999999999999999998765533 4
Q ss_pred eEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHH
Q 046958 319 VLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAA 361 (417)
Q Consensus 319 ~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA 361 (417)
.|+++||.+ ++++..+..+..+ .++-+..|-+++.
T Consensus 219 ~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i~ 253 (262)
T PRK13326 219 NLIITGGNS------NLILPLISVDFIF--NLYLTLEGIRILG 253 (262)
T ss_pred EEEEECCCH------HHHHhhCCCCcEE--CcccHHHHHHHHH
Confidence 699999977 4667777776666 3455666766543
No 117
>PRK12408 glucokinase; Provisional
Probab=56.10 E-value=40 Score=33.41 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCce-EEEecCcccc--HHHHHH--HHH---------hh-CCcEEccC
Q 046958 284 RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFV-LRVDGGATVN--NLLMQI--QAD---------LL-GSPVLRPA 348 (417)
Q Consensus 284 rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~-i~~~GG~a~s--~~~~q~--~Ad---------v~-g~pv~~~~ 348 (417)
+.+++-.+..+...+-.+... .+ ++. |++.||.+.+ +.+..- +.. .. ..||+...
T Consensus 249 ~~~~~~~~~~La~~i~nl~~~--ld--------Pe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~ 318 (336)
T PRK12408 249 HEALQVFCGFLGSVVGDMALA--YG--------ARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVE 318 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HC--------CCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEe
Confidence 334444444444444444332 23 566 9999988753 544331 211 22 56788776
Q ss_pred CCChhHHHHHHHHH
Q 046958 349 DIESTALGAAFAAG 362 (417)
Q Consensus 349 ~~e~salGaAllA~ 362 (417)
..++..+|||.++.
T Consensus 319 ~~~agl~GAa~~~~ 332 (336)
T PRK12408 319 HGQLGVLGAASWYL 332 (336)
T ss_pred CCChHHHHHHHHHH
Confidence 66899999986653
No 118
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=53.92 E-value=65 Score=31.42 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcccc-HHHHHHHHHhhCCcEEccCCCChhHHHHHHHH
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVN-NLLMQIQADLLGSPVLRPADIESTALGAAFAA 361 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s-~~~~q~~Adv~g~pv~~~~~~e~salGaAllA 361 (417)
...|++-.+..+...++.+....+ ..++++.||.+++ +.|..++=..+..|. ......||.++|
T Consensus 225 A~~Il~~aa~~i~~~~~~l~~~~g----------~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A 289 (301)
T COG2971 225 AIRILKEAAAYIATLLEALSIFNG----------SEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLA 289 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC----------CceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHH
Confidence 456777788888888888853223 5789999999986 888887777776665 334778999988
Q ss_pred HHhcC
Q 046958 362 GLAIG 366 (417)
Q Consensus 362 ~~~~G 366 (417)
....+
T Consensus 290 ~~~~~ 294 (301)
T COG2971 290 LGRFG 294 (301)
T ss_pred HHhhh
Confidence 76654
No 119
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=51.12 E-value=49 Score=32.96 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHHHHH----HHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC
Q 046958 278 SKAHFARAVLESMCFLVKDV----LDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG 341 (417)
Q Consensus 278 ~~~~l~rAvlEgia~~~~~~----~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g 341 (417)
+.+++...+.+.++..+.+- ++.+.. .... ++.++++||.|.|..+...+.+..+
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l-~~~~--------~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLLL-QPKN--------VKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccC--------CceEEEcCCccchHHHHHHHHHHHH
Confidence 56788877777777665433 333322 1233 7889999999999999988887764
No 120
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=50.70 E-value=58 Score=33.42 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD 349 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~ 349 (417)
.++.+|=+|-+..-++.-++.. |.+ ..-...|+++||+++-+-...+..++|++||++...
T Consensus 293 s~II~aR~~Ei~~lV~~~l~~~----g~~-----~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 293 SEIIEARVEEILELVKAELRKS----GLP-----NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHc----Ccc-----ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 4445555555555454444332 331 112688999999999999999999999999998544
No 121
>PRK13321 pantothenate kinase; Reviewed
Probab=49.95 E-value=89 Score=29.58 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
..|...+...++.|.+..+..+++.+++..+.+ ..|+++||-+ ++++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~---------~~vi~TGG~a------~~l~~~~~~~~~~--~~~Lvl~ 245 (256)
T PRK13321 183 KSTVSSIQSGLYYGYAGLVEGIVARIKAELGGP---------PRVIATGGFA------SLIAKESRCFDHV--DPDLLLE 245 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCcH------HHHhhcCCCccEE--CCCcHHH
Confidence 357889999999999999999999998765543 4699999987 3445555544443 3556777
Q ss_pred HHHHHHH
Q 046958 356 GAAFAAG 362 (417)
Q Consensus 356 GaAllA~ 362 (417)
|-..++.
T Consensus 246 GL~~~~~ 252 (256)
T PRK13321 246 GLRILYQ 252 (256)
T ss_pred HHHHHHH
Confidence 7776654
No 122
>PRK13331 pantothenate kinase; Reviewed
Probab=49.37 E-value=94 Score=29.57 Aligned_cols=142 Identities=10% Similarity=-0.049 Sum_probs=83.8
Q ss_pred cchHHHhHhcCcC--CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHH
Q 046958 162 LGNQHAAMLGQAC--KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELA 239 (417)
Q Consensus 162 ~~D~~aa~lg~g~--~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a 239 (417)
+.|-.++++|+.. ...-+++.+||...+-++.. .|.+.. .+. .||.-. ..+.|.+..
T Consensus 97 G~DR~~~~vaA~~~~~~~~iVID~GTA~T~D~V~~-------~g~~~G-G~I----~PG~~l---------~~~AL~~~T 155 (251)
T PRK13331 97 GIDRALALWGAGQTYGFPCLVIDAGTALTFTGVDS-------DRTLVG-GAI----LPGLGL---------QLRSLADKT 155 (251)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEECCCceEEEEEcC-------CCcEEE-EEE----CccHHH---------HHHHHHHhh
Confidence 3599999999876 44468899999987765432 121100 111 244321 122333333
Q ss_pred HhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCce
Q 046958 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFV 319 (417)
Q Consensus 240 ~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 319 (417)
++. |...-+..|. .++| ..|...|-..++.|.+..+..+++.+++..+ + -.
T Consensus 156 a~L---------p~v~~~~~~~-------~~iG---~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~-~---------~~ 206 (251)
T PRK13331 156 AAL---------PQVELPPPLP-------PRWA---TNTQEAIQSGVIYTILAGLRDFIEDWLSLFP-D---------GK 206 (251)
T ss_pred hcC---------CCCccccCCC-------cccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------CE
Confidence 333 2221111111 1223 3578899999999999999999999887655 4 36
Q ss_pred EEEecCccccHHHHHHHHHhhCCc-------EEccCCCChhHHHHHHHH
Q 046958 320 LRVDGGATVNNLLMQIQADLLGSP-------VLRPADIESTALGAAFAA 361 (417)
Q Consensus 320 i~~~GG~a~s~~~~q~~Adv~g~p-------v~~~~~~e~salGaAllA 361 (417)
|+++||.+ +++++.+..+ ..+ .++-...|..+++
T Consensus 207 vi~TGG~a------~~l~~~~~~~~~~~~~~~~~--~~~LvL~GL~~i~ 247 (251)
T PRK13331 207 IVLTGGDG------ELLHNYLQDLDPELAQRLRV--DPNLIFWGIAAIR 247 (251)
T ss_pred EEEECCCH------HHHHHHhhccccccccccEE--CcchHHHHHHHHH
Confidence 99999987 4555555443 333 3456777766655
No 123
>PLN02596 hexokinase-like
Probab=48.33 E-value=43 Score=35.13 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=51.6
Q ss_pred EcCCCCC-CHHHHHHHHHHHHHHHHHHHH-----HHHHhhccccccccCCCCCceEEEecCccc-cHHHH----HHHHHh
Q 046958 271 IGITRFT-SKAHFARAVLESMCFLVKDVL-----DSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLM----QIQADL 339 (417)
Q Consensus 271 ~Gl~~~~-~~~~l~rAvlEgia~~~~~~~-----~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~----q~~Adv 339 (417)
+|+...+ ....++|.|++.|...-..+. -.+.+ .|... .....|-+.|+.-+ .|.+. +.+.++
T Consensus 382 l~~~~~~~~d~~~lr~i~~~V~~RAArL~Aa~iaail~k-~g~~~-----~~~~~VavDGSvye~~p~f~~~l~~al~el 455 (490)
T PLN02596 382 FGITDSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKK-LGRIE-----NKKSVVTVEGGLYEHYRVFRNYLHSSVWEM 455 (490)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC-----CCceEEEEeCcceeeCcCHHHHHHHHHHHH
Confidence 4553222 234567778887766544333 12222 23110 00235777788853 55554 445555
Q ss_pred hC----CcEEccCCCChhHHHHHHHHHHhcC
Q 046958 340 LG----SPVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 340 ~g----~pv~~~~~~e~salGaAllA~~~~G 366 (417)
+| .+|.+....+++.+|||++|+....
T Consensus 456 lg~~~~~~i~~~~s~DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 456 LGSELSDNVVIEHSHGGSGAGALFLAACQTG 486 (490)
T ss_pred hCcccCCcEEEEEccCchhHHHHHHHHhhcc
Confidence 54 2577766788999999999997654
No 124
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=48.06 E-value=72 Score=31.72 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=32.9
Q ss_pred CceEEEecCccccHHHHHHHHHhhCCcEEccCC-CChhHHHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD-IESTALGAAFAAGL 363 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~-~e~salGaAllA~~ 363 (417)
+++|+++||||+ .+.+.+.+.++.- ++++. ..+-|.|...++..
T Consensus 292 ~d~IiL~GGGA~--ll~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~ 336 (344)
T PRK13917 292 FDRVIVTGGGAN--IFFDSLSHWYSDV-EKADESQFANVRGYYKYGEL 336 (344)
T ss_pred CCEEEEECCcHH--HHHHHHHHHcCCe-EEcCChHHHHHHHHHHHHHH
Confidence 789999999996 4677888888864 55454 44778888887753
No 125
>PRK13322 pantothenate kinase; Reviewed
Probab=47.59 E-value=1.1e+02 Score=28.95 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
.+|...+...++.|++..+..+++.+++..+.+ -.|+++||.+ ++++..+.. +.+ .++-...
T Consensus 175 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~---------~~vilTGG~a------~~l~~~l~~-~~~--~~~LvL~ 236 (246)
T PRK13322 175 RNTVDAVERGCLLMLRGFIESQLEQARELWGPD---------FEIFLTGGDA------PLLADHLPQ-ARV--VPDLVFV 236 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCCH------HHHHhhCCC-CEE--CCCcHHH
Confidence 457889999999999999999999988755533 4699999997 345555555 433 3556777
Q ss_pred HHHHHHH
Q 046958 356 GAAFAAG 362 (417)
Q Consensus 356 GaAllA~ 362 (417)
|-..++.
T Consensus 237 GL~~~~~ 243 (246)
T PRK13322 237 GLAQYCP 243 (246)
T ss_pred HHHHHHh
Confidence 7766553
No 126
>PRK00292 glk glucokinase; Provisional
Probab=47.59 E-value=54 Score=31.91 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCc-eEEEecCccc-c-HHHHH-----HH------HHhh-CCcEEccC
Q 046958 284 RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEF-VLRVDGGATV-N-NLLMQ-----IQ------ADLL-GSPVLRPA 348 (417)
Q Consensus 284 rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~-~i~~~GG~a~-s-~~~~q-----~~------Adv~-g~pv~~~~ 348 (417)
+.+++-.+..+...+..+... .+ ++ .|++.||.+. + +.+.. .+ .+.+ ..||+...
T Consensus 231 ~~~~~~~~~~lg~~i~~l~~~--~~--------P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (316)
T PRK00292 231 RRTLSLFCVILGRVAGNLALT--LG--------ARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVIT 300 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hc--------CCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEc
Confidence 444444444444444444332 23 55 7888888873 3 33322 11 2232 56666655
Q ss_pred CCChhHHHHHHHHH
Q 046958 349 DIESTALGAAFAAG 362 (417)
Q Consensus 349 ~~e~salGaAllA~ 362 (417)
..++..+|||.++.
T Consensus 301 ~~~agl~GAa~~~~ 314 (316)
T PRK00292 301 HPQPGLLGAGAYLR 314 (316)
T ss_pred CCChHHHHHHHHHh
Confidence 67899999998764
No 127
>PLN02362 hexokinase
Probab=46.14 E-value=1.1e+02 Score=32.39 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=33.2
Q ss_pred eEEEecCcc-ccHHHHHH----HHHhhCC----cEEccCCCChhHHHHHHHHHHhcC
Q 046958 319 VLRVDGGAT-VNNLLMQI----QADLLGS----PVLRPADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 319 ~i~~~GG~a-~s~~~~q~----~Adv~g~----pv~~~~~~e~salGaAllA~~~~G 366 (417)
.|-+.||.- +.|.+.+. +..+++. .|.+...++++.+|||++|+.+..
T Consensus 444 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~ 500 (509)
T PLN02362 444 VVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSS 500 (509)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHh
Confidence 566678885 35655554 4445532 566666789999999999998854
No 128
>PRK09698 D-allose kinase; Provisional
Probab=45.82 E-value=1.1e+02 Score=29.46 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccH-H----HHHHHHHhhC-------CcEEccC
Q 046958 281 HFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNN-L----LMQIQADLLG-------SPVLRPA 348 (417)
Q Consensus 281 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~-~----~~q~~Adv~g-------~pv~~~~ 348 (417)
.+++...+.++..+..++..+ + ++.|++.|+.++.. . +.+.+.+.+- .+|.+..
T Consensus 215 ~~~~~~~~~la~~l~~li~~l------d--------P~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 280 (302)
T PRK09698 215 PFIQSLLENLARAIATSINLF------D--------PDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYAS 280 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------C--------CCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECC
Confidence 355666666766666655433 3 67888888887643 2 2233333221 2344444
Q ss_pred -CCChhHHHHHHHHHH
Q 046958 349 -DIESTALGAAFAAGL 363 (417)
Q Consensus 349 -~~e~salGaAllA~~ 363 (417)
..+++++|||.++..
T Consensus 281 ~~~~a~~~GAa~~~~~ 296 (302)
T PRK09698 281 SSDFNGAQGAAILAHQ 296 (302)
T ss_pred cCCcccHHhHHHHHHH
Confidence 356789999998753
No 129
>PRK12397 propionate kinase; Reviewed
Probab=45.19 E-value=77 Score=32.33 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccc-cHHHHHHHHHhh
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATV-NNLLMQIQADLL 340 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~-s~~~~q~~Adv~ 340 (417)
++-++|..+|+++..+-.+-...| . ++.|+++||... ++..++.+.+-+
T Consensus 297 A~lA~d~f~yri~k~IGa~~a~lg-g--------vDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 297 AKLALTLFAERIRATIGSYIMQMG-G--------LDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C--------CCEEEECCchhhCCHHHHHHHHhhh
Confidence 345889999999999888765444 3 899999999987 456666655544
No 130
>PRK13320 pantothenate kinase; Reviewed
Probab=44.06 E-value=1.3e+02 Score=28.31 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
.+|...+...++.|.+..+..+++.+++..+ + -.|+++||.+ ++++..+..++.+ .++-...
T Consensus 173 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~-~---------~~vi~TGG~a------~~l~~~l~~~~~~--~p~Lvl~ 234 (244)
T PRK13320 173 RSTEECIRSGVVWGCVAEIEGLIEAYKSKLP-E---------LLVILTGGDA------PFLASRLKNTIFA--DEHAVLK 234 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------CEEEEECCCH------HHHHHhcCCccEE--CcchHHH
Confidence 4578889999999999999999998887544 2 3699999997 4667777777665 2455666
Q ss_pred HHHHH
Q 046958 356 GAAFA 360 (417)
Q Consensus 356 GaAll 360 (417)
|-..+
T Consensus 235 GL~~~ 239 (244)
T PRK13320 235 GLNRI 239 (244)
T ss_pred HHHHH
Confidence 65544
No 131
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=43.92 E-value=77 Score=34.39 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCcccc--HHHHH--H----------HHHhhCCcEEcc
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVN--NLLMQ--I----------QADLLGSPVLRP 347 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s--~~~~q--~----------~Adv~g~pv~~~ 347 (417)
+.+.+++-.+..+...+-.+.-..+ + ++.|++.||.+.+ +.+.+ + ..-+-+.||+++
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~-~--------p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i 314 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLG-A--------LGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLI 314 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-C--------CCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEE
Confidence 3344555555555555444433222 2 4678888888743 33332 2 222346899999
Q ss_pred CCCChhHHHHHHHHHHhcC
Q 046958 348 ADIESTALGAAFAAGLAIG 366 (417)
Q Consensus 348 ~~~e~salGaAllA~~~~G 366 (417)
...+.+.+|||..+...+.
T Consensus 315 ~~~~~~l~Gaa~~~~~~~~ 333 (638)
T PRK14101 315 TAEYPAFLGVSAILAEQLS 333 (638)
T ss_pred eCCChhHHHHHHHHHHHhc
Confidence 9999999999998888764
No 132
>PTZ00288 glucokinase 1; Provisional
Probab=42.58 E-value=1.4e+02 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=32.8
Q ss_pred CceEEEecCc-cccHHHHH------HH-----------HHhh-CCcEEc-cCCCChhHHHHHHHHHHhc
Q 046958 317 EFVLRVDGGA-TVNNLLMQ------IQ-----------ADLL-GSPVLR-PADIESTALGAAFAAGLAI 365 (417)
Q Consensus 317 ~~~i~~~GG~-a~s~~~~q------~~-----------Adv~-g~pv~~-~~~~e~salGaAllA~~~~ 365 (417)
++.|++.||+ .++..+.+ .+ .+.+ ..||++ ....+.+.+|||.+|...+
T Consensus 324 P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 324 PLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred CCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHhh
Confidence 5668888877 44433322 11 2333 479988 7788899999999987654
No 133
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=42.06 E-value=56 Score=30.81 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=70.7
Q ss_pred chHHHhHhcCcC--CCCceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHHH
Q 046958 163 GNQHAAMLGQAC--KKGEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELAL 240 (417)
Q Consensus 163 ~D~~aa~lg~g~--~~g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a~ 240 (417)
.|-.++++|+-. ...-+++.+||...+-++.. .|.+.. .+. .||.-.. .+.|.+..+
T Consensus 101 ~DR~a~~~aA~~~~~~~~lViD~GTA~Tid~v~~-------~g~~~G-G~I----~PG~~l~---------~~aL~~~Ta 159 (243)
T TIGR00671 101 IDRVANALAAIKFYGFNVVVVDAGTALTIDLVDQ-------EGKFLG-GAI----APGLGIS---------LHALKDRAA 159 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCceEEEEEcC-------CCeEEE-EEE----CccHHHH---------HHHHHhhHh
Confidence 599999999866 44568899999987765432 121100 111 2443211 122323233
Q ss_pred hcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceE
Q 046958 241 RVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVL 320 (417)
Q Consensus 241 ~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 320 (417)
+. |.+..+. |- .++| ..|...+...++.|.+..+..+++.+++..+.+ -.|
T Consensus 160 ~L---------p~v~~~~-~~-------~~~g---~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~---------~~v 210 (243)
T TIGR00671 160 AL---------PKFEIAR-PD-------EVLG---KSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRK---------FAV 210 (243)
T ss_pred cC---------CCCCcCC-CC-------ccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEE
Confidence 32 3221111 10 1122 357899999999999999999999988755533 469
Q ss_pred EEecCcccc
Q 046958 321 RVDGGATVN 329 (417)
Q Consensus 321 ~~~GG~a~s 329 (417)
+++||.++.
T Consensus 211 i~TGG~a~~ 219 (243)
T TIGR00671 211 VITGGDGKY 219 (243)
T ss_pred EEECCchHh
Confidence 999998764
No 134
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=41.74 E-value=1.2e+02 Score=29.62 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=25.5
Q ss_pred CceEEEecCccccHHHHHHHHHhhCC---cEEccCCCC-hhHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGS---PVLRPADIE-STALG 356 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~---pv~~~~~~e-~salG 356 (417)
.++|+++||||. ++...+.+.++. .+.+++.++ +=+.|
T Consensus 273 ~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 273 IDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRG 314 (318)
T ss_dssp -SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHH
T ss_pred CCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHH
Confidence 688999999985 777788888874 577777665 33444
No 135
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=39.76 E-value=2.5e+02 Score=26.67 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=86.7
Q ss_pred CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHHHhcCCCCCeEEccccCC
Q 046958 177 GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELALRVNSTGGIYFVRAFNG 256 (417)
Q Consensus 177 g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a~~~~~~~gl~flP~l~G 256 (417)
.-+.+++||+.-+..+++.. ..+..|- -..| +...|.|--.+-...+|++|-++++.-..+.--+.+-...|
T Consensus 146 pyilvNiGsGvSilkvtgps-qf~RvGG-----sslG--GGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg 217 (342)
T COG5146 146 PYILVNIGSGVSILKVTGPS-QFERVGG-----SSLG--GGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYG 217 (342)
T ss_pred ceeeEeccCCeEEEEecCcc-hhccccc-----cccC--cchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhcc
Confidence 34788999997777666421 1111110 1111 12234443333334689999988875322221223345554
Q ss_pred CC---CCCCCCCCceEEEc-----CC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecC
Q 046958 257 LL---APWWRDDARSVCIG-----IT--R-FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGG 325 (417)
Q Consensus 257 er---~P~~~~~~rg~~~G-----l~--~-~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG 325 (417)
.- .|. ..++-++-+| .. + ..++.++.++++-.|.-.+-++.=...+. .+ ++.|+..|.
T Consensus 218 ~dy~~~gl-ks~~iAssFGkVf~~r~k~le~F~p~di~~sll~aisnnigqiAyl~A~~--~n--------~qNIyfgGS 286 (342)
T COG5146 218 DDYEEPGL-KSDLIASSFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVARE--FN--------TQNIYFGGS 286 (342)
T ss_pred CccccCCC-CchhhHHHHHHHHHhhcCchhhcCcHHHHHHHHHHHhcchhhhHHHHHHh--hc--------cceEEEeee
Confidence 32 222 1111111122 21 1 25678899999888877776664332222 34 789999998
Q ss_pred ccccHHHHHHHHHhh----CCc----EEccCCCChhHHHHHHHH
Q 046958 326 ATVNNLLMQIQADLL----GSP----VLRPADIESTALGAAFAA 361 (417)
Q Consensus 326 ~a~s~~~~q~~Adv~----g~p----v~~~~~~e~salGaAllA 361 (417)
..||.+..-..-|-. -.| ..+-...-..|+||-++.
T Consensus 287 f~rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegylGa~GAf~~~ 330 (342)
T COG5146 287 FHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGAFYLG 330 (342)
T ss_pred eccchhhhhhhhHHHHHhhcCcccceeeeeccchhhHHHHHhhc
Confidence 889887754433321 233 222223446777777654
No 136
>PLN02666 5-oxoprolinase
Probab=39.26 E-value=1.4e+02 Score=35.22 Aligned_cols=77 Identities=17% Similarity=0.015 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCc-EEccCC-CChhH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSP-VLRPAD-IESTA 354 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~p-v~~~~~-~e~sa 354 (417)
.+.++...+|++-..-.+...+..+...-|.+| +...+++.||.. +...-.+|+.+|.+ |.++.. .-.+|
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dp------r~~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA 525 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYET------ANHALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSA 525 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------CCceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHH
Confidence 466777777777777777666666654457661 013355556554 68888999999999 777754 45789
Q ss_pred HHHHHHH
Q 046958 355 LGAAFAA 361 (417)
Q Consensus 355 lGaAllA 361 (417)
+|+++.=
T Consensus 526 ~G~~~ad 532 (1275)
T PLN02666 526 YGMGLAD 532 (1275)
T ss_pred HHHHhhh
Confidence 9988753
No 137
>PRK13318 pantothenate kinase; Reviewed
Probab=39.21 E-value=1.8e+02 Score=27.51 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhHH
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTAL 355 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sal 355 (417)
..|...+...++.|.+..+...++.+++..+.+ -.|+++||.++ +++..+..+..+ .++-...
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~---------~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~ 245 (258)
T PRK13318 183 KNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKD---------PKVIATGGLAP------LFAEESDTIDIV--DPDLTLK 245 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CEEEEECCchH------HHHhccCCCcEE--CcccHHH
Confidence 357889999999999999999999988755533 46999999974 455555555444 2445666
Q ss_pred HHHHHHH
Q 046958 356 GAAFAAG 362 (417)
Q Consensus 356 GaAllA~ 362 (417)
|-..++.
T Consensus 246 Gl~~~~~ 252 (258)
T PRK13318 246 GLRLIYE 252 (258)
T ss_pred HHHHHHH
Confidence 6655543
No 138
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=38.82 E-value=1.4e+02 Score=28.89 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEec-Cccc-cHHHHHHHHHhhC---------CcEEccCC-
Q 046958 282 FARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDG-GATV-NNLLMQIQADLLG---------SPVLRPAD- 349 (417)
Q Consensus 282 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~G-G~a~-s~~~~q~~Adv~g---------~pv~~~~~- 349 (417)
.++.+++-.+..+...+-.+... .+ ++.|++.| |.+. .+.+.+.+...+. .++.....
T Consensus 223 ~a~~~~~~~~~~la~~ianl~~~--~~--------P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 292 (314)
T COG1940 223 LAKEVIERAADYLARGLANLINL--LD--------PEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALG 292 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cC--------CCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcc
Confidence 35566777777777777666553 33 67888888 6664 3666665554322 12222221
Q ss_pred -CChhHHHHHHHHHH
Q 046958 350 -IESTALGAAFAAGL 363 (417)
Q Consensus 350 -~e~salGaAllA~~ 363 (417)
.+++++|||+++..
T Consensus 293 ~~~a~~~ga~~~~~~ 307 (314)
T COG1940 293 GNDAGLIGAALLALL 307 (314)
T ss_pred cccccchhHHHHHHH
Confidence 46777888887754
No 139
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=38.01 E-value=13 Score=37.09 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=33.8
Q ss_pred CceEEEecCccccHHHHHHHHHhhCC--c------EEc--c-CCCChhHHHHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGS--P------VLR--P-ADIESTALGAAFAAGL 363 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~--p------v~~--~-~~~e~salGaAllA~~ 363 (417)
.++|+++||+|+-+-+.+.+.+-++. | +.+ . +...++-+|++++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 57799999999988888888877762 1 222 2 2344677899988844
No 140
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=34.55 E-value=1.4e+02 Score=28.61 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCC---CC----h
Q 046958 280 AHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPAD---IE----S 352 (417)
Q Consensus 280 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~---~e----~ 352 (417)
-+++.-+.+.+.-.++..++...+..| .++|+.+|=| +++.|.-++.+|..+...+. .+ .
T Consensus 252 ~d~A~~~~~~~l~~l~e~I~~~a~r~g----------L~~Vv~~GlG---efLi~~A~~~lg~ec~~i~e~~g~~~s~v~ 318 (330)
T COG1548 252 IDLAEKAYNALLELLAENIEEKAKRYG----------LNTVVATGLG---EFLIQEACKRLGYECISIDETYGKEVSKVA 318 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC----------hhhhhhccch---HHHHHHHHHhhCCeEEEhhhhhccchhhhc
Confidence 344444555555555556655554445 6789999977 89999999999999887653 22 4
Q ss_pred hHHHHHHHH
Q 046958 353 TALGAAFAA 361 (417)
Q Consensus 353 salGaAllA 361 (417)
.|+|+|.+.
T Consensus 319 PA~a~a~L~ 327 (330)
T COG1548 319 PAVAAAKLL 327 (330)
T ss_pred hHHHHHHHH
Confidence 567777664
No 141
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=34.22 E-value=1.6e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=28.8
Q ss_pred CceEEEecCccccHHHHHHHHHhhCC-cEEccCCCC-hhHHHHHHH
Q 046958 317 EFVLRVDGGATVNNLLMQIQADLLGS-PVLRPADIE-STALGAAFA 360 (417)
Q Consensus 317 ~~~i~~~GG~a~s~~~~q~~Adv~g~-pv~~~~~~e-~salGaAll 360 (417)
++.|+++||||. ++.+.+.+.+.. .+.+++.++ +-|.|-..+
T Consensus 274 ~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 274 IQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred ccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 889999999986 666777777765 344555433 666665544
No 142
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=32.39 E-value=67 Score=32.63 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cccccccCCCCCceEEEecCcccc-HHHHHHHHHhhC-CcEEc
Q 046958 283 ARAVLESMCFLVKDVLDSKQKDA-VEKGVIKDAKPEFVLRVDGGATVN-NLLMQIQADLLG-SPVLR 346 (417)
Q Consensus 283 ~rAvlEgia~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~~~GG~a~s-~~~~q~~Adv~g-~pv~~ 346 (417)
++-++|.++|+++..+-.+.... | . ++.|+++||...| +..++++.+.+. .+|++
T Consensus 295 A~la~d~~~y~i~k~Ig~~~a~l~G-~--------vDaivfTGGige~~~~vr~~~~~~l~~~gv~l 352 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAYAAVLEG-G--------VDAIVFTGGIGENSALVRERICRKLWFLGVKL 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-S---------SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-C--------CCEEEEccccccchHHHHHHHHhhcCcCCeEe
Confidence 45679999999999988876544 3 3 8999999999975 667788887775 55655
No 143
>PRK13324 pantothenate kinase; Reviewed
Probab=31.75 E-value=1e+02 Score=29.42 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=80.0
Q ss_pred chHHHhHhcCcC-CC--CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCCCcHHHHHHHH
Q 046958 163 GNQHAAMLGQAC-KK--GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGIISNASEIEELA 239 (417)
Q Consensus 163 ~D~~aa~lg~g~-~~--g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~l~~~a 239 (417)
.|-.++++|+-. .+ .-+++.+||...+-++.. .|.+.. .+. .||.-.. .+.|.+..
T Consensus 108 ~DR~~~~vaA~~~~~~~~~iViD~GTA~T~d~v~~-------~g~~~G-G~I----~PG~~l~---------~~aL~~~T 166 (258)
T PRK13324 108 ADRIASCISAIADHPNKDLLIIDLGTATTFDLVTK-------DKKYLS-GSI----MPGVKLS---------LNALCQGA 166 (258)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcC-------CCeEEE-EEE----CccHHHH---------HHHHHHHH
Confidence 599999999865 42 467889999987765432 222100 111 2443221 22233333
Q ss_pred HhcCCCCCeEEccccCCCCCCCCCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCce
Q 046958 240 LRVNSTGGIYFVRAFNGLLAPWWRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFV 319 (417)
Q Consensus 240 ~~~~~~~gl~flP~l~Ger~P~~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 319 (417)
++. |....+. |. ..+| ..|...+...++.|.+..+..+++.+++..+.+ -+
T Consensus 167 a~L---------p~v~~~~-~~-------~~~g---~nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~---------~~ 217 (258)
T PRK13324 167 SQL---------SSVTIVK-PE-------VAIG---YDTKTNIRSGLYYGHLGALKELKRRSVEEFGSP---------VY 217 (258)
T ss_pred hcC---------CCCCccC-CC-------CcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CE
Confidence 332 3222111 11 1122 346788888888899888988888887655533 46
Q ss_pred EEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHH
Q 046958 320 LRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGL 363 (417)
Q Consensus 320 i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~ 363 (417)
++++||.++ ++ .....+..+ .++-...|-.+++..
T Consensus 218 vi~TGG~a~------~~-~~~~~~~~~--~~~LvL~GL~~i~~~ 252 (258)
T PRK13324 218 TIATGGFAG------LF-KEEDIFNEI--SPDLILRGIRIAFLE 252 (258)
T ss_pred EEEECCChH------Hh-cccCCcceE--CcChHHHHHHHHHHH
Confidence 899999873 22 112333333 355677777766543
No 144
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=31.11 E-value=69 Score=31.25 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=26.8
Q ss_pred eEEEecCcc-c-cHHHHH--H----------HHHhhCCcEEccCCCChhHHHHH
Q 046958 319 VLRVDGGAT-V-NNLLMQ--I----------QADLLGSPVLRPADIESTALGAA 358 (417)
Q Consensus 319 ~i~~~GG~a-~-s~~~~q--~----------~Adv~g~pv~~~~~~e~salGaA 358 (417)
.+++.||++ + .+.+.+ + ..-+-+.||++....+.+.+|||
T Consensus 263 gv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 263 GVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred cEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccCCC
Confidence 688999996 3 244443 1 12234689999888888888874
No 145
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.99 E-value=1.3e+02 Score=29.45 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=43.4
Q ss_pred CCCCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEe--cCcc---ccHHH---H
Q 046958 262 WRDDARSVCIGITRFTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVD--GGAT---VNNLL---M 333 (417)
Q Consensus 262 ~~~~~rg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~--GG~a---~s~~~---~ 333 (417)
.|....-.++.+..+|+-++++-. +++.-.+.+.+..-.. .++|.+. |||+ ++..| +
T Consensus 142 yd~~~n~g~v~vg~s~dTa~Fav~-------~i~~WW~~~g~~~yp~--------a~~lli~~D~GgsN~~r~r~wk~~L 206 (311)
T PF07592_consen 142 YDPAANEGWVSVGTSHDTADFAVD-------SIRRWWEEMGKARYPH--------AKRLLITADNGGSNGSRRRLWKKRL 206 (311)
T ss_pred EeccCCeEEEEEecCcccHHHHHH-------HHHHHHHHhChhhcCc--------hheEEEeccCCCCccchhHHHHHHH
Confidence 355555566666666666676433 3344445552211112 4665544 6764 56777 5
Q ss_pred HHHHHhhCCcEEccCCC
Q 046958 334 QIQADLLGSPVLRPADI 350 (417)
Q Consensus 334 q~~Adv~g~pv~~~~~~ 350 (417)
|-+||-+|+.|.++.-+
T Consensus 207 ~~la~~~gl~I~v~hyP 223 (311)
T PF07592_consen 207 QELADETGLSIRVCHYP 223 (311)
T ss_pred HHHHHHhCCEEEEEEcC
Confidence 78899999999886543
No 146
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=29.08 E-value=42 Score=29.90 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=35.1
Q ss_pred EEEecCccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCC
Q 046958 320 LRVDGGATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGV 367 (417)
Q Consensus 320 i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~ 367 (417)
+++.|||+|--....++.-+...-+.. +.--+++.||.+.|..++|.
T Consensus 2 Lvl~GGG~rG~~~~Gvl~~L~e~~~~~-d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 2 LVFEGGGAKGIAYIGALKALEEAGILK-KRVAGTSAGAITAALLALGY 48 (194)
T ss_pred eEEcCchHHHHHHHHHHHHHHHcCCCc-ceEEEECHHHHHHHHHHcCC
Confidence 788999999877777777666543332 44457888999999988885
No 147
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=28.84 E-value=93 Score=29.69 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=27.4
Q ss_pred CceEEEecCc--cccHHHHHHHHHhhCCcEEcc
Q 046958 317 EFVLRVDGGA--TVNNLLMQIQADLLGSPVLRP 347 (417)
Q Consensus 317 ~~~i~~~GG~--a~s~~~~q~~Adv~g~pv~~~ 347 (417)
.+-|+++||. +..+.-+|.+|..||+|++.-
T Consensus 61 ~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 61 ADVVITTGGLGPTHDDLTAEAVAKALGRPLVLD 93 (255)
T ss_pred CCEEEECCCcCCCccHhHHHHHHHHhCCCcccC
Confidence 5678999976 889999999999999999883
No 148
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=27.38 E-value=1e+02 Score=28.68 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCc-cccHHHHHHHHHhhC
Q 046958 285 AVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGA-TVNNLLMQIQADLLG 341 (417)
Q Consensus 285 AvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~-a~s~~~~q~~Adv~g 341 (417)
|+|--...+.+++++.|++ .|.+ .+-++..||. ..++++-|+=||+..
T Consensus 163 alMTttm~~~~~viE~L~e-eGiR--------d~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKE-EGIR--------DKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCc--------cCeEEeecCccccHHHHHHhCCCccC
Confidence 3344444667999999998 4876 3434444555 344555555555443
No 149
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=27.37 E-value=2.7e+02 Score=27.38 Aligned_cols=45 Identities=31% Similarity=0.304 Sum_probs=27.0
Q ss_pred ceEEEecCcc-ccHHHHH---HHH---------Hhh-CCcEEccCCCChhHHHHHHHHH
Q 046958 318 FVLRVDGGAT-VNNLLMQ---IQA---------DLL-GSPVLRPADIESTALGAAFAAG 362 (417)
Q Consensus 318 ~~i~~~GG~a-~s~~~~q---~~A---------dv~-g~pv~~~~~~e~salGaAllA~ 362 (417)
.-|+++||.+ |+..+.+ +++ +++ ..||++....+.+.+|||..|.
T Consensus 256 gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 256 GGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp CEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred eeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 4599999997 4444333 222 233 4799999889999999999875
No 150
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=22.93 E-value=63 Score=31.70 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=36.0
Q ss_pred EEEecCccccHHH---HHHHHHhhCCcEE-ccCCCChhHHHHHHHHHHhcCCCCCHHHHHhc
Q 046958 320 LRVDGGATVNNLL---MQIQADLLGSPVL-RPADIESTALGAAFAAGLAIGVFKEEEIFASS 377 (417)
Q Consensus 320 i~~~GG~a~s~~~---~q~~Adv~g~pv~-~~~~~e~salGaAllA~~~~G~~~~~~~~~~~ 377 (417)
+.+.|||+|--.- ++.+...+|+|+. ..+.--+++.|+.+.++.+.|. +.+++.+.
T Consensus 2 LsLDGGG~RGl~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~--s~~e~~~~ 61 (312)
T cd07212 2 LCLDGGGIRGLVLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGK--SLREARRL 61 (312)
T ss_pred EEECCcHHHHHHHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCC--CHHHHHHH
Confidence 5678999885433 4444555677742 3454557888888888888764 56666443
No 151
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=22.56 E-value=1.9e+02 Score=29.34 Aligned_cols=64 Identities=17% Similarity=0.039 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhCCcEEccCCCChhH
Q 046958 277 TSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLGSPVLRPADIESTA 354 (417)
Q Consensus 277 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g~pv~~~~~~e~sa 354 (417)
.+...+++.+..|+...+...+..+.+. +.+ ++.|+.+||.. .-+.|-..++|+.+....|+.+
T Consensus 63 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~-~~~--------p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~esn~ 126 (396)
T TIGR03492 63 QSLRGLLRDLRAGLVGLTLGQWRALRKW-AKK--------GDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAKSDY 126 (396)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHH-hhc--------CCEEEEECcHH-----HHHHHHHcCCCceEEEeeccce
Confidence 4566888999999999998888888874 335 68999999998 5677888899998855444333
No 152
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=22.32 E-value=2e+02 Score=30.70 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=46.3
Q ss_pred CccccHHHHHHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHHHHHHHHHH
Q 046958 325 GATVNNLLMQIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCR 404 (417)
Q Consensus 325 G~a~s~~~~q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~y~~~~~ 404 (417)
+.+|--++.|++-|++.-.+..+ ...++.|||-++.+. +|.|. .++-....+ -+-.|.|+....=-.+-+++|++
T Consensus 101 e~tRYqfflQlKqDll~GRL~Cp-~~~AaeLaAl~lQsE-LGDYn-~~~Ht~~yV--SefRf~p~Qte~LE~~I~e~hK~ 175 (616)
T KOG3530|consen 101 ENTRYQFFLQLKQDLLSGRLYCP-FETAAELAALILQSE-LGDYN-EEEHTGGYV--SEFRFLPNQTEELEERIFELHKE 175 (616)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHH-hcCCC-hhhccccce--eeeEecccccHHHHHHHHHHHHH
Confidence 44567799999999998777774 456788888777754 57763 333323331 24457787763211123445544
Q ss_pred H
Q 046958 405 A 405 (417)
Q Consensus 405 ~ 405 (417)
+
T Consensus 176 ~ 176 (616)
T KOG3530|consen 176 L 176 (616)
T ss_pred h
Confidence 4
No 153
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=3.7e+02 Score=25.38 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC
Q 046958 276 FTSKAHFARAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG 341 (417)
Q Consensus 276 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g 341 (417)
..+++|+..++-|-+.--+-.+-++.-...+ -+++.++||.--|..+.+|.+....
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~----------s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG----------SKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CCcEEEEecccccHHHHHHHHHHHH
Confidence 3588999999988886666666655433233 4789999999999999999887763
No 154
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=21.75 E-value=69 Score=32.89 Aligned_cols=65 Identities=23% Similarity=0.107 Sum_probs=46.5
Q ss_pred HHHHHhhCCcEEccCCCChhHHHHHHHHHHhcCCCCCHHHHHhccccCCCcEEeCCCCHHHHHHHHHHHHH
Q 046958 334 QIQADLLGSPVLRPADIESTALGAAFAAGLAIGVFKEEEIFASSERTKTSTTFKPLLNEEFRKKKAESQCR 404 (417)
Q Consensus 334 q~~Adv~g~pv~~~~~~e~salGaAllA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~y~~~~~ 404 (417)
.++-.++.-|-.+....+-.|.|-|+.++.+-|+ ++++=++ ...++-.|.|-....+..|+.|++
T Consensus 165 SvvEa~LedPr~iL~aQ~~~aRgeaiA~MKA~Gv--eYeERMe----~LeevtyPkPL~e~L~~af~~y~~ 229 (461)
T PF12029_consen 165 SVVEATLEDPRQILRAQQRKARGEAIAEMKADGV--EYEERME----RLEEVTYPKPLAELLEAAFETYRR 229 (461)
T ss_pred hhhhhhcCChHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHH----HHhhCCCCCchHHHHHHHHHHHHh
Confidence 4555666666555555677899999999999997 5665333 346777899987777777777764
No 155
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=21.04 E-value=1.1e+02 Score=30.19 Aligned_cols=47 Identities=13% Similarity=-0.084 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC
Q 046958 284 RAVLESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG 341 (417)
Q Consensus 284 rAvlEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g 341 (417)
-.|-|+|+.++.++=+.++... ...|+++||-++-|-++|-++.-+.
T Consensus 296 ~GIpEAV~esl~~~Pe~~~p~l-----------~~NIv~iGGn~~fPgF~~RL~~Elr 342 (400)
T KOG0680|consen 296 PGIPEAVLESLSMLPEEVRPLL-----------LENIVCIGGNSNFPGFRQRLARELR 342 (400)
T ss_pred CCchHHHHHHHHhCHHHHHHHH-----------HhcEEEecCccCCcchHHHHHHHHH
Confidence 3566777777777777777532 5689999999999999998887664
No 156
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=20.68 E-value=51 Score=25.30 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=17.9
Q ss_pred HHHHHhcCCCCCCCCCccccC
Q 046958 121 KPTLETLGIPAEIRPKIVSNS 141 (417)
Q Consensus 121 ~~ll~~~gi~~~~LP~i~~~~ 141 (417)
.++|+.++|.+++||.|..++
T Consensus 27 ~~vLk~l~i~~~qLPkI~~~D 47 (80)
T COG2012 27 KEVLKELGIEPEQLPKIKASD 47 (80)
T ss_pred HHHHHHhCCCHHHCCcccccC
Confidence 458999999999999988654
No 157
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=20.04 E-value=4.5e+02 Score=25.66 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=80.9
Q ss_pred CCCcEEeccchHHHhHhcCcCCC----CceEEeccCcceeeeecCcceeccCCCceeeeceecCCCCCchhhhhhhcCCC
Q 046958 154 TGIPISGCLGNQHAAMLGQACKK----GEAKSTYGTGAFIRLNTGEEVVKSKHGLLSTLAFKLGPKAPTNYALEDSLGII 229 (417)
Q Consensus 154 ~g~pV~~g~~D~~aa~lg~g~~~----g~~~~s~GTs~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~~ 229 (417)
-|+||-.|+...-+|.+|+-..| .-+.+-+|-++.=. .+.+..|... ..|.-|.+......+...+|+
T Consensus 108 lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDA------sii~~~g~v~-~iHlAGAG~mVTmlI~sELGl- 179 (332)
T PF08841_consen 108 LGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDA------SIINRDGEVT-AIHLAGAGNMVTMLINSELGL- 179 (332)
T ss_dssp HTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEE------EEE-TTS-EE-EEEEE-SHHHHHHHHHHHCT--
T ss_pred HCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccH------HHhCCCCcEE-EEEecCCchhhHHHHHHhhCC-
Confidence 48999999999999999975533 34556666543211 1122234332 234444321122333456775
Q ss_pred CcHHHHHHHHHhcC--C----------CCCeEEccccCCCCCCCCCCC--Cc------eEEEcCCCCCCHHHH---HHHH
Q 046958 230 SNASEIEELALRVN--S----------TGGIYFVRAFNGLLAPWWRDD--AR------SVCIGITRFTSKAHF---ARAV 286 (417)
Q Consensus 230 ~~~~~l~~~a~~~~--~----------~~gl~flP~l~Ger~P~~~~~--~r------g~~~Gl~~~~~~~~l---~rAv 286 (417)
++++ +.+.+++.| . ...+.|+. .|. +|+ +| +.++=++.+++.+.+ -|.+
T Consensus 180 ~d~~-lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd------~pl-~p~~faRvvi~~~~~lvPi~~~~~lEkir~vRr~A 251 (332)
T PF08841_consen 180 EDRE-LAEDIKKYPLAKVESLFHIRHEDGTVQFFD------EPL-DPDVFARVVILKEDGLVPIPGDLSLEKIRSVRREA 251 (332)
T ss_dssp S-HH-HHHHHHHS-EEEEECTTEEEETTS-EEE-S------S----CCCTTSEEEECTTEEEEESSTS-HHHHHHHHHHH
T ss_pred CCHH-HHHHhhhcchhhhccceEEEecCCceEEec------CCC-ChHHeeEEEEecCCceeecCCCccHHHHHHHHHHh
Confidence 3333 333344433 1 12333431 111 222 23 233445556665544 2232
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCCCceEEEecCccccHHHHHHHHHhhC-CcEE
Q 046958 287 LESMCFLVKDVLDSKQKDAVEKGVIKDAKPEFVLRVDGGATVNNLLMQIQADLLG-SPVL 345 (417)
Q Consensus 287 lEgia~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~GG~a~s~~~~q~~Adv~g-~pv~ 345 (417)
=+=+ | ...++++|++.... + .--.+.-|++.||.+-.-.+.|++.|.|- ..|+
T Consensus 252 K~kV-F-VtNa~RaL~~vsPt---g-niR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iV 305 (332)
T PF08841_consen 252 KEKV-F-VTNALRALKQVSPT---G-NIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIV 305 (332)
T ss_dssp HHHH-H-HHHHHHHHCCCSTT---S-SCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-E
T ss_pred hhhh-h-HHHHHHHHHhcCCC---C-CcccCceEEEecCchhhhhhHHHHHHHHhhCcce
Confidence 2222 2 23456667653210 0 00126678999999999999999999985 3443
Done!