BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046960
MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILK
CIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLA
LNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL

High Scoring Gene Products

Symbol, full name Information P value
TL29
AT4G09010 		protein from Arabidopsis thaliana 5.9e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046960
        (165 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2122333 - symbol:TL29 "AT4G09010" species:3702...   284  5.9e-25   1


>TAIR|locus:2122333 [details] [associations]
            symbol:TL29 "AT4G09010" species:3702 "Arabidopsis
            thaliana" [GO:0004601 "peroxidase activity" evidence=ISS]
            [GO:0006979 "response to oxidative stress" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0009543
            "chloroplast thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid
            lumen" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0016688 "L-ascorbate peroxidase activity"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009637 "response to blue light"
            evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
            evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
            [GO:0010218 "response to far red light" evidence=RCA] [GO:0015979
            "photosynthesis" evidence=RCA] [GO:0015995 "chlorophyll
            biosynthetic process" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0019760 "glucosinolate metabolic process"
            evidence=RCA] InterPro:IPR002016 InterPro:IPR002207
            InterPro:IPR010255 Pfam:PF00141 PRINTS:PR00459 GO:GO:0005634
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006979 GO:GO:0020037
            EMBL:AC005359 EMBL:AL161513 GO:GO:0004601 GO:GO:0009535 KO:K00434
            SUPFAM:SSF48113 GO:GO:0009543 EMBL:AF370534 EMBL:AY072503
            EMBL:AF441713 IPI:IPI00529692 PIR:A85091 RefSeq:NP_192640.1
            UniGene:At.22637 UniGene:At.47549 PDB:3RRW PDBsum:3RRW
            ProteinModelPortal:P82281 SMR:P82281 IntAct:P82281 STRING:P82281
            PeroxiBase:3920 PaxDb:P82281 PRIDE:P82281 EnsemblPlants:AT4G09010.1
            GeneID:826480 KEGG:ath:AT4G09010 GeneFarm:1959 TAIR:At4g09010
            eggNOG:NOG236966 HOGENOM:HOG000005679 InParanoid:P82281 OMA:MTYDKAT
            PhylomeDB:P82281 ProtClustDB:CLSN2686017 Genevestigator:P82281
            GermOnline:AT4G09010 Uniprot:P82281
        Length = 349

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 70/136 (51%), Positives = 88/136 (64%)

Query:     2 GASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGA-IRCHKIETQITVEA-GFGRRDIL 59
             G SFLSTVP         +    +T+++  S+H  A IRC KIE Q++ E+  F RRD+L
Sbjct:     3 GVSFLSTVP---SFTNTTNHQHLTTLSS--SSHRSAVIRCSKIEPQVSGESLAFHRRDVL 57

Query:    60 KCIGATIGMEIISSS--GSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLL 117
             K  G  +GME+I +    +V  A+AADL QRRQRSEF S IK  L T +K  P+L+PSLL
Sbjct:    58 KLAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLL 117

Query:   118 TLALNDAMTYDKVRTK 133
              LALNDAMTYDK  TK
Sbjct:   118 KLALNDAMTYDKA-TK 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       165   0.00093  107 3  11 22  0.45    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.98u 0.11s 17.09t   Elapsed:  00:00:01
  Total cpu time:  16.98u 0.11s 17.09t   Elapsed:  00:00:01
  Start:  Fri May 10 09:17:49 2013   End:  Fri May 10 09:17:50 2013

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