BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046960
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 36/48 (75%)
Query: 83 ADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKV 130
ADL QRRQRSEF S IK L T +K P+L+PSLL LALNDA TYDK
Sbjct: 2 ADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAXTYDKA 49
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 45 TQITVEAGFGRRDILKCIGATIGMEIISSSG-SVEMARAADLIQRRQRSEFISNIKETLQ 103
T +TV AG+ RDI+ + +EI G + E L+ +E + + E L+
Sbjct: 323 TTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALR 382
Query: 104 TALKGNP 110
AL+ P
Sbjct: 383 EALQHCP 389
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 60 KCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDL 112
K I +T GM + + + E R A +I + EFI N+KET + L D+
Sbjct: 261 KQIVSTRGMTVDTQTYHPE-PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 312
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 60 KCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDL 112
K I +T GM + + + E R A +I + EFI N+KET + L D+
Sbjct: 261 KQIVSTRGMTVDTQTYHPE-PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 312
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 60 KCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDL 112
K I +T GM + + + E R A +I + EFI N+KET + L D+
Sbjct: 261 KQIVSTRGMTVDTQTYHPE-PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 312
>pdb|3LVY|A Chain A, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Smu.961 From Streptococcus Mutans
pdb|3LVY|B Chain B, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Smu.961 From Streptococcus Mutans
pdb|3LVY|C Chain C, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Smu.961 From Streptococcus Mutans
pdb|3LVY|D Chain D, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Smu.961 From Streptococcus Mutans
pdb|3LVY|E Chain E, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Smu.961 From Streptococcus Mutans
pdb|3LVY|F Chain F, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Smu.961 From Streptococcus Mutans
Length = 207
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 98 IKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRT 132
+KETL+T K N IP+L+ L N + RT
Sbjct: 38 VKETLRTVKKDNGGYIPNLIGLLANAPTALETYRT 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,242,692
Number of Sequences: 62578
Number of extensions: 140741
Number of successful extensions: 447
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)