BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046960
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9THX6|TL29_SOLLC Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum
lycopersicum GN=CLEB3J9 PE=3 SV=1
Length = 345
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 89/128 (69%), Gaps = 5/128 (3%)
Query: 4 SFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIG 63
SF ST+P ++ +P PS T A+R G I C K +++ E F RRDIL+ +G
Sbjct: 3 SFASTLPSLVSFIPSPSSI---TNASRNPPQPGMI-CCKFRSELNNEDRFHRRDILQSVG 58
Query: 64 ATIGMEIIS-SSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALN 122
A +GM++I+ SS +E+A AADLIQRRQRS+F S IK TL A+K NPD+IPSLLTLALN
Sbjct: 59 AAVGMDLIARSSAFIEVANAADLIQRRQRSDFQSKIKLTLYDAIKANPDIIPSLLTLALN 118
Query: 123 DAMTYDKV 130
DA+TYDK
Sbjct: 119 DAITYDKA 126
>sp|P82281|TL29_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=TL29 PE=1 SV=2
Length = 349
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 96/167 (57%), Gaps = 12/167 (7%)
Query: 2 GASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEA-GFGRRDILK 60
G SFLSTVP + S+ + R + IRC KIE Q++ E+ F RRD+LK
Sbjct: 3 GVSFLSTVPSFTNTTNHQHLTTLSSSSHRSAV----IRCSKIEPQVSGESLAFHRRDVLK 58
Query: 61 CIGATIGMEIISSS--GSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLT 118
G +GME+I + +V A+AADL QRRQRSEF S IK L T +K P+L+PSLL
Sbjct: 59 LAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLK 118
Query: 119 LALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL 165
LALNDAMTYDK + I+F L R E N+ +S LSL
Sbjct: 119 LALNDAMTYDKA----TKSGGANGSIRFSSELSRAE-NEGLSDGLSL 160
>sp|P81833|TL29_SPIOL Thylakoid lumenal 29 kDa protein, chloroplastic (Fragment)
OS=Spinacia oleracea PE=1 SV=1
Length = 30
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/30 (73%), Positives = 24/30 (80%)
Query: 83 ADLIQRRQRSEFISNIKETLQTALKGNPDL 112
ADLIQRRQRSEF S+IK L T +K NPDL
Sbjct: 1 ADLIQRRQRSEFQSDIKGILYTVIKKNPDL 30
>sp|Q8GSM3|LOX22_HORVU Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1
SV=1
Length = 932
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 75 GSVEMARAADLIQRRQRSEFISNIKETLQ---TALKGNPDLIPSLLTLALNDAMTYDKVR 131
G + + R +R++++ + L T LK N D++PS TLA DA+ D R
Sbjct: 309 GEMYVPRDETFTERKEQAFLTKQLLSQLHGLCTGLKVNKDILPSFPTLASIDALYDDDFR 368
Query: 132 TKPLR 136
+P++
Sbjct: 369 NQPVQ 373
>sp|Q8E2Q7|SYD_STRA3 Aspartate--tRNA ligase OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=aspS PE=3 SV=1
Length = 583
Score = 32.7 bits (73), Expect = 0.99, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 32 SAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSV-------EMARAAD 84
S +AG +R I T IT++ GRR + +G I +++ G + E+A +
Sbjct: 4 SMYAGRVRSEHIGTSITLKGWVGRR---RDLGGLIFIDLRDREGIMQLVINPEEVAASVM 60
Query: 85 LIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFK 138
RSEF+ + + + N +L + L + + + +T P K
Sbjct: 61 ATAESLRSEFVIEVSGVVTAREQANDNLPTGEVELKVQELSVLNTSKTTPFEIK 114
>sp|A4VYB8|SYD_STRSY Aspartate--tRNA ligase OS=Streptococcus suis (strain 05ZYH33)
GN=aspS PE=3 SV=1
Length = 583
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 32 SAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIG---------MEIISSSGSVE---M 79
S +AG +R + +IT++ GRR + +G I M+++ + SVE M
Sbjct: 4 SMYAGRVRKEHVGQEITLKGWVGRR---RGLGGLIFIDLRDREGIMQLVINPESVEAEVM 60
Query: 80 ARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFK 138
A+A L RSEF+ + T+ + N ++ + L + + +T P K
Sbjct: 61 AKAESL-----RSEFVIEVTGTVVEREQANDNIPTGAVELQVTSLTVLNTAKTTPFEIK 114
>sp|A4W4L2|SYD_STRS2 Aspartate--tRNA ligase OS=Streptococcus suis (strain 98HAH33)
GN=aspS PE=3 SV=1
Length = 583
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 32 SAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIG---------MEIISSSGSVE---M 79
S +AG +R + +IT++ GRR + +G I M+++ + SVE M
Sbjct: 4 SMYAGRVRKEHVGQEITLKGWVGRR---RGLGGLIFIDLRDREGIMQLVINPESVEAEVM 60
Query: 80 ARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFK 138
A+A L RSEF+ + T+ + N ++ + L + + +T P K
Sbjct: 61 AKAESL-----RSEFVIEVTGTVVEREQANDNIPTGAVELQVTSLTVLNTAKTTPFEIK 114
>sp|Q1MPW3|KCY_LAWIP Cytidylate kinase OS=Lawsonia intracellularis (strain PHE/MN1-00)
GN=cmk PE=3 SV=1
Length = 225
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 39 RCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNI 98
+C K+ Q+ G G+ +L C G +IG EI S + + AA L +R E++ NI
Sbjct: 61 QCKKVTFQL---QGVGKNSLLMCNGESIGHEIRSETAGI---LAAQLGERTIIREYLKNI 114
Query: 99 KETL 102
++ +
Sbjct: 115 EQQI 118
>sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1 OS=Drosophila
melanogaster GN=Taf1 PE=1 SV=3
Length = 2129
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 84 DLIQR------RQRSE---FISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP 134
D +QR R+R++ +S+I E + L+ PD+ P L ++ Y +V TKP
Sbjct: 1455 DYLQRHNKTANRRRTDPVVVLSSILEIIHNELRSMPDVSPFLFPVSAKKVPDYYRVVTKP 1514
Query: 135 LRFKCLVDVIK 145
+ + + + I+
Sbjct: 1515 MDLQTMREYIR 1525
>sp|Q3JYL7|SYD_STRA1 Aspartate--tRNA ligase OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=aspS PE=3 SV=1
Length = 583
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 32 SAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVE------------M 79
S +AG +R I T IT++ GRR + +G I +++ G ++ M
Sbjct: 4 SMYAGRVRSEHIGTSITLKGWVGRR---RDLGGLIFIDLRDREGIMQLVINPEEVSASVM 60
Query: 80 ARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFK 138
A A L RSEF+ + + + N +L + L + + + +T P K
Sbjct: 61 ATAESL-----RSEFVIEVSGVVTAREQANDNLPTGEVELKVQELSVLNTSKTTPFEIK 114
>sp|B9DW80|SYD_STRU0 Aspartate--tRNA ligase OS=Streptococcus uberis (strain ATCC BAA-854
/ 0140J) GN=aspS PE=3 SV=1
Length = 582
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 32 SAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEM-------ARAAD 84
S +AG +R I ++T++ GRR + +G I +++ G +++ A+
Sbjct: 4 SMYAGHVRSEHIGQELTLKGWVGRR---RDLGGLIFIDLRDREGIMQLVINPEDVAKDVM 60
Query: 85 LIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDV- 143
I RSE++ + ++ + N + + L + + +T P K V+V
Sbjct: 61 EIAESLRSEYVIEVTGIVEERQQANNQIATGAVELKVEQITVLNTSKTTPFEIKDGVEVS 120
Query: 144 ----IKFLYLLWRK 153
+++ YL R+
Sbjct: 121 DETRLRYRYLDLRR 134
>sp|O86459|AAT_RHILP Aspartate aminotransferase OS=Rhizobium leguminosarum bv. phaseoli
GN=aspC PE=3 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 64 ATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPS 115
A G I ++G +++ +A D+IQ +Q S S + AL G D IP
Sbjct: 242 AMTGWRIGYAAGPIQLIKAMDMIQGQQTSGATSIAQWAAVEALNGTQDFIPE 293
>sp|Q8DWV5|SYD_STRA5 Aspartate--tRNA ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=aspS PE=3 SV=1
Length = 583
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 25/141 (17%)
Query: 30 RCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVE----------- 78
+ S +AG +R I T IT++ GRR + +G I +++ G ++
Sbjct: 2 KRSMYAGRVRSEHIGTSITLKGWVGRR---RDLGGLIFIDLRDREGIMQLVINPEEVSAS 58
Query: 79 -MARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRF 137
MA A L RSEF+ + + + N +L + L + + + +T P
Sbjct: 59 VMATAESL-----RSEFVIEVSGVVTAREQANDNLPTGEVELKVQELSILNTSKTTPFEI 113
Query: 138 KCLVDV-----IKFLYLLWRK 153
K ++ +++ YL R+
Sbjct: 114 KDGIEANDDTRMRYRYLDLRR 134
>sp|B0U3Q9|SYI_XYLFM Isoleucine--tRNA ligase OS=Xylella fastidiosa (strain M12) GN=ileS
PE=3 SV=1
Length = 943
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 30 RCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATI-GMEIISSSGSVEMARAADLIQR 88
+C H + H + ++ G +DI+K +GA I + I S+ S EM+ + ++++R
Sbjct: 604 QCLTHGFTVDQHGRKMSKSLGNGIEPQDIIKTLGADILRLWIASTDYSNEMSLSQEILKR 663
Query: 89 RQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDK 129
++ I+ T + L P+L + L+D + D+
Sbjct: 664 --TTDAYRRIRNTTRFLLGNLHGFDPTLHLVPLSDMIALDR 702
>sp|B2GBY7|SYD_LACF3 Aspartate--tRNA ligase OS=Lactobacillus fermentum (strain NBRC 3956
/ LMG 18251) GN=aspS PE=3 SV=1
Length = 591
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 34 HAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMA------RAADLIQ 87
+AG +I ++ V+ +R + +G I +++ G V++ +AA +
Sbjct: 6 YAGRTSEEQIGQEVVVKGWVAKR---RNLGGLIFIDLWDREGIVQLVFNEEEDQAAFEVA 62
Query: 88 RRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFL 147
+ R+++I + ++ + NPD+ + + + +A K +T P + VD + L
Sbjct: 63 NQARNQYILEARGLVRARAEVNPDIATGKIEIEVKEAKILAKSQTPPFEVQDDVDASEDL 122
Query: 148 YLLWR 152
L +R
Sbjct: 123 RLKYR 127
>sp|Q87BL5|SYI_XYLFT Isoleucine--tRNA ligase OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=ileS PE=3 SV=1
Length = 943
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 30 RCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATI-GMEIISSSGSVEMARAADLIQR 88
+C H + H + ++ G +DI+K +GA I + I S+ S EM+ + ++++R
Sbjct: 604 QCLTHGFTVDQHGRKMSKSLGNGIEPQDIIKTLGADILRLWIASTDYSNEMSLSQEILKR 663
Query: 89 RQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDK 129
++ I+ T + L P+L + L+D + D+
Sbjct: 664 --TTDAYRRIRNTARFLLGNLHGFDPTLHLVPLSDMIALDR 702
>sp|Q9PAS7|SYI_XYLFA Isoleucine--tRNA ligase OS=Xylella fastidiosa (strain 9a5c) GN=ileS
PE=3 SV=1
Length = 943
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 30 RCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATI-GMEIISSSGSVEMARAADLIQR 88
+C H + H + ++ G +DI+K +GA I + I S+ S EM+ + ++++R
Sbjct: 604 QCLTHGFTVDQHGRKMSKSLGNGIEPQDIIKTLGADILRLWIASTDYSNEMSLSQEILKR 663
Query: 89 RQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDK 129
++ I+ T + L P+L + L+D + D+
Sbjct: 664 --TTDAYRRIRNTARFLLGNLHGFDPTLHLVPLSDMIALDR 702
>sp|B2I6V2|SYI_XYLF2 Isoleucine--tRNA ligase OS=Xylella fastidiosa (strain M23) GN=ileS
PE=3 SV=1
Length = 943
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 30 RCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATI-GMEIISSSGSVEMARAADLIQR 88
+C H + H + ++ G +DI+K +GA I + I S+ S EM+ + ++++R
Sbjct: 604 QCLTHGFTVDQHGRKMSKSLGNGIEPQDIIKTLGADILRLWIASTDYSNEMSLSQEILKR 663
Query: 89 RQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDK 129
++ I+ T + L P+L + L+D + D+
Sbjct: 664 --TTDAYRRIRNTARFLLGNLHGFDPTLHLVPLSDMIALDR 702
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,995,532
Number of Sequences: 539616
Number of extensions: 1899383
Number of successful extensions: 7225
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7210
Number of HSP's gapped (non-prelim): 32
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)