Query 046960
Match_columns 165
No_of_seqs 24 out of 26
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 10:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrw_A Thylakoid lumenal 29 kD 99.2 1.2E-11 4.1E-16 103.9 4.8 55 83-137 2-61 (268)
2 3e2o_A CCP, cytochrome C perox 96.2 0.0035 1.2E-07 52.7 4.0 42 96-137 20-73 (294)
3 3riv_A Ascorbate peroxidase; a 95.9 0.0056 1.9E-07 50.3 3.8 39 96-134 10-48 (271)
4 3n3r_A Catalase-peroxidase; E1 94.6 0.023 7.8E-07 53.8 3.9 48 91-138 69-134 (748)
5 3vli_A Catalase-peroxidase 2; 94.5 0.045 1.5E-06 51.7 5.5 39 100-138 447-491 (737)
6 3vli_A Catalase-peroxidase 2; 93.9 0.068 2.3E-06 50.5 5.5 48 91-138 53-118 (737)
7 3ut2_A Catalase-peroxidase 2; 93.9 0.081 2.8E-06 50.3 6.0 44 95-138 84-141 (764)
8 1iyn_A Chloroplastic ascorbate 93.5 0.036 1.2E-06 46.4 2.7 36 96-132 9-44 (295)
9 1u2k_A Peroxidase/catalase HPI 93.5 0.045 1.5E-06 46.2 3.3 40 99-138 33-78 (309)
10 3q3u_A Lignin peroxidase; oxid 92.9 0.11 3.6E-06 44.7 4.6 57 97-153 20-101 (338)
11 3n3r_A Catalase-peroxidase; E1 92.7 0.14 4.8E-06 48.5 5.5 38 101-138 465-508 (748)
12 3m5q_A Manganese peroxidase 1; 92.1 0.12 4.3E-06 44.7 4.2 58 97-154 19-97 (357)
13 1itk_A Catalase-peroxidase; he 91.9 0.2 6.7E-06 47.3 5.5 36 99-134 446-481 (731)
14 3fmu_A VersatIle peroxidase VP 91.6 0.21 7.3E-06 42.7 5.0 58 96-153 18-94 (331)
15 3ut2_A Catalase-peroxidase 2; 91.0 0.22 7.4E-06 47.4 4.8 37 101-137 478-521 (764)
16 2cca_A Peroxidase/catalase T; 91.0 0.16 5.4E-06 48.0 3.8 43 96-138 74-130 (740)
17 2vcn_A Ascorbate peroxidase; I 90.5 0.11 3.7E-06 43.1 2.1 38 96-134 28-65 (261)
18 1itk_A Catalase-peroxidase; he 90.0 0.21 7.3E-06 47.1 3.8 43 96-138 62-118 (731)
19 2cca_A Peroxidase/catalase T; 89.7 0.19 6.5E-06 47.5 3.2 39 99-137 455-499 (740)
20 1ub2_A Catalase-peroxidase; KA 88.5 0.22 7.4E-06 47.0 2.6 43 96-138 60-116 (720)
21 1ub2_A Catalase-peroxidase; KA 86.2 0.41 1.4E-05 45.2 3.1 35 100-134 446-480 (720)
22 1gwu_A Peroxidase C1A; oxidore 83.2 0.83 2.8E-05 38.6 3.4 34 94-127 15-48 (309)
23 1pa2_A Peroxidase, ATP A2; oxi 82.9 0.91 3.1E-05 38.2 3.5 33 94-126 15-47 (306)
24 1llp_A LIP4.15, lignin peroxid 82.4 0.63 2.1E-05 40.0 2.4 23 109-131 34-56 (343)
25 2e39_A Peroxidase; heme protei 82.2 0.58 2E-05 40.2 2.1 23 109-131 43-65 (344)
26 1bgp_A Barley grain peroxidase 81.2 0.79 2.7E-05 38.7 2.5 33 95-127 22-54 (309)
27 1qgj_A Peroxidase N; oxidoredu 81.2 1.1 3.7E-05 37.6 3.4 34 94-127 14-47 (300)
28 1fhf_A SEED coat peroxidase; o 80.3 0.92 3.1E-05 38.1 2.6 34 94-127 14-47 (304)
29 3hdl_A Royal PALM TREE peroxid 73.4 2.4 8.3E-05 35.7 3.3 32 94-125 14-45 (304)
30 1sch_A PNP, peanut peroxidase, 72.5 2.1 7.2E-05 35.9 2.7 33 94-126 14-46 (294)
31 2pq4_B Periplasmic nitrate red 47.2 11 0.00036 22.9 1.9 19 53-71 3-21 (35)
32 2f4m_B UV excision repair prot 40.3 14 0.00049 24.8 1.9 20 99-118 13-32 (61)
33 1pve_A HHR23B, UV excision rep 36.9 15 0.0005 25.6 1.6 19 100-118 16-34 (72)
34 3erm_A Uncharacterized conserv 32.4 27 0.00092 25.6 2.4 28 86-113 53-80 (91)
35 2ky8_A Methyl-CPG-binding doma 27.8 31 0.0011 23.5 2.0 16 132-147 40-55 (72)
36 2jd3_A STBB protein; plasmid s 26.8 41 0.0014 25.9 2.7 43 86-129 31-73 (130)
37 2izx_A CAMP-dependent protein 24.4 52 0.0018 19.4 2.3 27 92-118 5-31 (41)
38 1d9n_A Methyl-CPG-binding prot 24.3 36 0.0012 23.5 1.8 22 123-147 32-53 (75)
39 3m20_A 4-oxalocrotonate tautom 22.0 1E+02 0.0036 18.7 3.5 26 88-113 12-37 (62)
40 2kyg_A CAMP-dependent protein 22.0 59 0.002 20.3 2.3 29 90-118 11-39 (50)
41 3c2i_A Methyl-CPG-binding prot 21.7 43 0.0015 24.4 1.9 24 122-148 44-67 (97)
42 2qsf_X RAD23, UV excision repa 21.0 50 0.0017 26.0 2.2 18 101-118 37-54 (171)
43 3vxv_A Methyl-CPG-binding doma 20.7 54 0.0018 22.1 2.1 18 131-148 32-49 (69)
44 2z15_A Protein TOB1; human TOB 20.1 76 0.0026 23.8 3.0 33 77-109 10-50 (130)
No 1
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana}
Probab=99.18 E-value=1.2e-11 Score=103.92 Aligned_cols=55 Identities=65% Similarity=0.918 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC-----cee
Q 046960 83 ADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP-----LRF 137 (165)
Q Consensus 83 AdLiqrrQrseFqs~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg-----~~~ 137 (165)
|||||||||++|++.++..++++|+.+|...|.+|||+..|+.|||+.+|.| |+|
T Consensus 2 ~~~~~~~~~~~~~~iV~~~v~~~~~~~~~~a~~llRLafHDc~Ty~~~~~~gGcDGSIll 61 (268)
T 3rrw_A 2 ADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAMTYDKATKSGGANGSIRF 61 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCBTTTTBCSSSSGGGS
T ss_pred chHhhhhccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHhhcCcCCCCCCCCCCeeeee
Confidence 7999999999999999999999999999999999999999999999999998 777
No 2
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ...
Probab=96.22 E-value=0.0035 Score=52.73 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCCC------chhHHHHHHhccccccccccCCC------cee
Q 046960 96 SNIKETLQTALKGNPD------LIPSLLTLALNDAMTYDKVRTKP------LRF 137 (165)
Q Consensus 96 s~ik~~L~~ai~~~pe------liPslltLaLNDA~TYDKaTKtg------~~~ 137 (165)
..+|..|.++|+.++| +.|.+||||..||.|||+.+|+| |||
T Consensus 20 ~~v~~di~~~~~~~~~~~d~~~~~~~lvRlawHda~Tyr~~d~~GGadg~~ir~ 73 (294)
T 3e2o_A 20 QKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRF 73 (294)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHHTTCBTTTTBSSSTTCGGGS
T ss_pred HHHHHHHHHHHhcCcccccccchHHHHHHHHHHHhcccccCCCCCCCCcceecc
Confidence 4578889999999984 79999999999999999999998 888
No 3
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A*
Probab=95.90 E-value=0.0056 Score=50.34 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960 96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP 134 (165)
Q Consensus 96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg 134 (165)
..+|..+.++++.+|-++|++|||+..||+|||.-.+.|
T Consensus 10 ~~vr~~v~~~~~~~~~~~a~llRl~fH~a~t~dc~~~~g 48 (271)
T 3riv_A 10 RALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDG 48 (271)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTCBTTTTBS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhcccCCCCCCCCC
Confidence 467889999999999999999999999999999988765
No 4
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
Probab=94.61 E-value=0.023 Score=53.77 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=41.4
Q ss_pred HHHHH----HHHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceee
Q 046960 91 RSEFI----SNIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 91 rseFq----s~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
+.||. ..+|..|.+.++..+| +.|.+||||..||.|||+.+++| |||.
T Consensus 69 ~~~~~~~D~~~vk~~I~~~~~~~~~~wp~d~g~~gp~lvRlawHdagTy~~~d~~GGa~ggsirf~ 134 (748)
T 3n3r_A 69 AQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFA 134 (748)
T ss_dssp HHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred HHHhhHhhHHHHHHHHHHHHhcccccccccccchhHHHHHHhhcccccccCCCCCCCCCCCceecC
Confidence 55564 4689999999998875 79999999999999999999997 8885
No 5
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*
Probab=94.46 E-value=0.045 Score=51.72 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960 100 ETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 100 ~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
..|+..|-+.-..+|.+||||..||.|||+.+|+| |||.
T Consensus 447 ~~lk~~~~~~g~~~~~lvRlAwhdA~Tf~~sd~~GGanGasIrl~ 491 (737)
T 3vli_A 447 AELKEEILDSDLSVSQLVKTAWASASTYRDSDKRGGANGARLRLE 491 (737)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGST
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhhcccccccCCcCCCCcceEEec
Confidence 34677777788899999999999999999999997 8884
No 6
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*
Probab=93.89 E-value=0.068 Score=50.54 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=40.1
Q ss_pred HHHHH----HHHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceee
Q 046960 91 RSEFI----SNIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 91 rseFq----s~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
+.||. ..+|..|.+.|+...| +.|.+||||..||.|||+.+++| |||.
T Consensus 53 ~~~~~~~d~~~vk~di~~~~~~~~~~wpad~g~~gp~lvRlawHdagTy~~~d~~GGanggsirf~ 118 (737)
T 3vli_A 53 AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFA 118 (737)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCSSSTTCGGGST
T ss_pred HHHhccccHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHhccccccCCCCCCCCCeEecc
Confidence 44554 4688899999997654 69999999999999999999997 8885
No 7
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}
Probab=93.88 E-value=0.081 Score=50.26 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceee
Q 046960 95 ISNIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 95 qs~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
...+|..|.+.|+...| +.|.+||||..||.|||+.+++| |||.
T Consensus 84 ~~avk~di~~~~~~~~~~wp~d~g~~gp~lvRlawHdagTy~~~d~~GGanggsirf~ 141 (764)
T 3ut2_A 84 YEAVKKDIAALMTESQDWWPADFGNYGGLFVRMAXHSAGTYRAMDGRGGGGMGQQRFA 141 (764)
T ss_dssp HHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHhhcccccccCCCCCCCCCCCeeecc
Confidence 35688999999997764 69999999999999999999997 8885
No 8
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1
Probab=93.55 E-value=0.036 Score=46.41 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccC
Q 046960 96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRT 132 (165)
Q Consensus 96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTK 132 (165)
..+++.|++.++ ++-+.|++|||+.-|+.|||+.++
T Consensus 9 ~~vr~~i~~~~~-~~~~~a~llRL~FHDc~ty~~~~~ 44 (295)
T 1iyn_A 9 KSAREDIKELLK-TKFCHPIMVRLGWHDAGTYNKNIE 44 (295)
T ss_dssp HHHHHHHHHHHH-HHCCHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHHHh-CCCchHHHHHHHHHHHhccccccc
Confidence 346666776665 578999999999999999999986
No 9
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A
Probab=93.54 E-value=0.045 Score=46.17 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960 99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
-..|+++|...|-.+|.+|||+.-|+.|||..+++| |||.
T Consensus 33 i~~l~~~i~~~~~~~a~llRlafHDc~t~~~sd~~gG~nGa~ir~~ 78 (309)
T 1u2k_A 33 IIDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALM 78 (309)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHTTCCTTCSSCSSTBCGGGST
T ss_pred HHHHHHHHHHCCCcHHHHHhhcccccccccCcCCCCCCCcccccCc
Confidence 456777888899999999999999999999988875 7774
No 10
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0
Probab=92.89 E-value=0.11 Score=44.73 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCc---hhHHHHHHhccccccccc------cCCC------ceee----------hhHHHHHHHHHHH
Q 046960 97 NIKETLQTALKGNPDL---IPSLLTLALNDAMTYDKV------RTKP------LRFK----------CLVDVIKFLYLLW 151 (165)
Q Consensus 97 ~ik~~L~~ai~~~pel---iPslltLaLNDA~TYDKa------TKtg------~~~~----------~~~~~~~~~~~~~ 151 (165)
.++..|++.++..... ++.+||||..||.|||+. +|.| |+|. -|-+||..|--.-
T Consensus 20 ~V~~di~~~l~~~g~~g~~a~~lvRlafHda~Ty~~~~~~~g~~~~GGcDGSill~~~~Ek~~~~N~~L~~vi~~lk~~~ 99 (338)
T 3q3u_A 20 PVLDDIQANLFNGGKCEEEAHEAVRLTFHDAVGFSLAAQKAGKFGGGGADGSILAFSDIETAFIPNFGLEFTTEGFIPFA 99 (338)
T ss_dssp HHHHHHHHHTSTTTCCSHHHHHHHHHHHHHHTSCCHHHHHTTSCCCCSSSSHHHHTHHHHTTSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHhhhhcccccccccccCCCCCCCCeeeeCCcccccCccccCHHHHHHHHHHHH
Confidence 4677788888766555 449999999999999998 4666 5552 3446666555444
Q ss_pred HH
Q 046960 152 RK 153 (165)
Q Consensus 152 ~~ 153 (165)
.|
T Consensus 100 e~ 101 (338)
T 3q3u_A 100 LA 101 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 11
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
Probab=92.66 E-value=0.14 Score=48.54 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960 101 TLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 101 ~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
.|+..|-+.-.-+|.+||+|..||.|||+.+|+| |||.
T Consensus 465 ~lk~~~~~~gl~~~~lvrlAwhdA~Tf~~sd~~GGanGa~Ir~~ 508 (748)
T 3n3r_A 465 ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLA 508 (748)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTTCCTTTCCCSSTBCGGGST
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccCCCCCCCCceEEcc
Confidence 4666666667789999999999999999999998 8883
No 12
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A*
Probab=92.15 E-value=0.12 Score=44.66 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhc--CCCchhHHHHHHhccccccccccC---CC------cee----------ehhHHHHHHHHHHHHHh
Q 046960 97 NIKETLQTALKG--NPDLIPSLLTLALNDAMTYDKVRT---KP------LRF----------KCLVDVIKFLYLLWRKE 154 (165)
Q Consensus 97 ~ik~~L~~ai~~--~peliPslltLaLNDA~TYDKaTK---tg------~~~----------~~~~~~~~~~~~~~~~~ 154 (165)
.++..|++.++. ..+++|.+|||+.-|+.|||+++. .| |+| .-|-+||..+--.-.|.
T Consensus 19 ~V~~di~~~l~~~~~g~~a~~llRLafHDc~t~~~~~g~~~~gGcDGSill~~~~Ek~~~~N~gL~~vid~lk~~~e~~ 97 (357)
T 3m5q_A 19 PLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKH 97 (357)
T ss_dssp HHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGGTTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhhccccccccCCCCCCCCccccccCCccccCCccccCHHHHHHHHHHHHHhc
Confidence 355566666653 678899999999999999998763 23 555 23557777665544443
No 13
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Probab=91.94 E-value=0.2 Score=47.34 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960 99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP 134 (165)
Q Consensus 99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg 134 (165)
...|+.+|...|..+|.||||+..||.|||..+|+|
T Consensus 446 i~~lk~~i~~~~~~~a~LvRlafHDc~t~d~sD~~G 481 (731)
T 1itk_A 446 IAELKEEILDSDLSVSQLVKTAWASASTYRDSDKRG 481 (731)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCC
Confidence 567788888899999999999999999999998875
No 14
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A*
Probab=91.62 E-value=0.21 Score=42.73 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCC---CchhHHHHHHhccccccccccCCC------ceee----------hhHHHHHHHHHHHHH
Q 046960 96 SNIKETLQTALKGNP---DLIPSLLTLALNDAMTYDKVRTKP------LRFK----------CLVDVIKFLYLLWRK 153 (165)
Q Consensus 96 s~ik~~L~~ai~~~p---eliPslltLaLNDA~TYDKaTKtg------~~~~----------~~~~~~~~~~~~~~~ 153 (165)
..++..|++.++.+. +.++.+|||+.-|+.||++.++.| |+|. -|-+||..+--...|
T Consensus 18 ~~v~~di~~~l~~~g~~g~~a~~llRLafHDc~ty~~~d~~gGcDgSill~~~~Ek~~~~N~gL~~vid~lk~~~e~ 94 (331)
T 3fmu_A 18 FPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAK 94 (331)
T ss_dssp HHHHHHHHHHTSTTTCSSHHHHHHHHHHHHHHTCCBTTTBCCSSSSHHHHTHHHHTTSGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcccccCCCCCCCCchhhhcCCcccccCccccCHHHHHHHHHHHHHH
Confidence 345667777776543 467799999999999999999987 6652 344666665544444
No 15
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}
Probab=91.04 E-value=0.22 Score=47.41 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHhhcC-CCchhHHHHHHhccccccccccCCC------cee
Q 046960 101 TLQTALKGN-PDLIPSLLTLALNDAMTYDKVRTKP------LRF 137 (165)
Q Consensus 101 ~L~~ai~~~-peliPslltLaLNDA~TYDKaTKtg------~~~ 137 (165)
.|+..|-+. -..+|.+||+|..||.|||+.+|+| |||
T Consensus 478 ~lk~~~~~~~gl~~~~lvrlAwhdA~Tf~~sd~~GGanGasIrl 521 (764)
T 3ut2_A 478 KLKAAILSTDGLDVSKLASTAMACATTYRNSDKRGGCNGARIAL 521 (764)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhhccccccccccCCCCcceEEe
Confidence 466666655 3568999999999999999999997 888
No 16
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Probab=90.96 E-value=0.16 Score=48.02 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcC--------CCchhHHHHHHhccccccccccCCC------ceee
Q 046960 96 SNIKETLQTALKGN--------PDLIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 96 s~ik~~L~~ai~~~--------peliPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
..+|..|+++++.. +.+.|.+|||+.-|+.|||..+++| |||.
T Consensus 74 ~~Vk~~v~~~~~~~~~~wpad~~~~~~~liRL~fHDc~t~~~sd~~gG~dggsi~~~ 130 (740)
T 2cca_A 74 DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFA 130 (740)
T ss_dssp HHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred HHHHHHHHHHHhcccccccccCCccHHHHHHHHHhhcccccccCCCCCCCCcccccc
Confidence 67899999999988 7899999999999999999988764 6773
No 17
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ...
Probab=90.53 E-value=0.11 Score=43.06 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960 96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP 134 (165)
Q Consensus 96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg 134 (165)
..+++.|++++ .+|-+.|++|||+.-|+.+||..+.+|
T Consensus 28 ~~~r~~v~~~~-~d~~~aa~llRL~FHDc~gcD~s~~~g 65 (261)
T 2vcn_A 28 EKAKKKLRGFI-AEKRCAPLMLRLAAHSAGTFDKGTKTG 65 (261)
T ss_dssp CHHHHHHHHHH-HHHTCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred HHHHHHHHHHH-hCCCchHHHHHHHHccCCCCCcccCCC
Confidence 34667777774 468999999999999999999998775
No 18
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Probab=90.04 E-value=0.21 Score=47.09 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcC--------CCchhHHHHHHhccccccccccCCC------ceee
Q 046960 96 SNIKETLQTALKGN--------PDLIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 96 s~ik~~L~~ai~~~--------peliPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
..+|..|+++++.. +-+.|++|||+.-||.|||..+++| |||.
T Consensus 62 ~~vk~~v~~~~~~~~~~wp~d~~~~g~~liRlafHd~~t~~~sd~~gG~dggsir~~ 118 (731)
T 1itk_A 62 EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFA 118 (731)
T ss_dssp HHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHhhhccccCcCCCCCCCCccccch
Confidence 57899999999987 4689999999999999999998875 6773
No 19
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Probab=89.75 E-value=0.19 Score=47.49 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC------cee
Q 046960 99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRF 137 (165)
Q Consensus 99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~ 137 (165)
-..|+.+|...+-.+|.+|||+..||.||++.+|+| |||
T Consensus 455 i~~lk~~i~~~~~~~a~LlRlafHDc~tfr~sd~~GGcDGasI~L 499 (740)
T 2cca_A 455 IASLKSQIRASGLTVSQLVSTAWAAASSFRGSDKRGGANGGRIRL 499 (740)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhccccCCCCCCCCCCceeec
Confidence 367888888899999999999999999999999987 777
No 20
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Probab=88.49 E-value=0.22 Score=47.00 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcC--------CCchhHHHHHHhccccccccccCCC------ceee
Q 046960 96 SNIKETLQTALKGN--------PDLIPSLLTLALNDAMTYDKVRTKP------LRFK 138 (165)
Q Consensus 96 s~ik~~L~~ai~~~--------peliPslltLaLNDA~TYDKaTKtg------~~~~ 138 (165)
+.+|..|+++++.. +-+.|++|||+.-||.|||....+| |||.
T Consensus 60 ~~Vr~~v~~~~~~~~~~wp~d~~~~g~~liRLafHd~~t~~~~dg~gG~dggsirf~ 116 (720)
T 1ub2_A 60 AALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYRIADGRGGAGTGNQRFA 116 (720)
T ss_dssp STTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred HHHHHHHHHHHhcccccccccCCccHHHHHHHHHhhhccccCcCCCCCCCccccccc
Confidence 45788999999987 5799999999999999999998875 7774
No 21
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Probab=86.23 E-value=0.41 Score=45.16 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960 100 ETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP 134 (165)
Q Consensus 100 ~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg 134 (165)
+.|+.+|...|..+|++|||+.-|+.||+..+|+|
T Consensus 446 ~~vk~~i~~~~~~~a~LlRlafHDc~v~rg~D~~g 480 (720)
T 1ub2_A 446 QAVKDRIAASGLSISELVSTAWDSARTYRNSDKRG 480 (720)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhHhccccCCCCCC
Confidence 67888999999999999999999999999998876
No 22
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ...
Probab=83.16 E-value=0.83 Score=38.57 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960 94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTY 127 (165)
Q Consensus 94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TY 127 (165)
..+.|+..++++++.+|.+.|++|||+.-|+.+|
T Consensus 15 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~ 48 (309)
T 1gwu_A 15 VSNIVRDTIVNELRSDPRIAASILRLHFHDCFVN 48 (309)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCccccchhheehhhhccC
Confidence 3567889999999999999999999999999887
No 23
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A*
Probab=82.92 E-value=0.91 Score=38.18 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHhccccc
Q 046960 94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMT 126 (165)
Q Consensus 94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~T 126 (165)
..+.|++.++++++.+|-+.|++|||+.-|+.+
T Consensus 15 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv 47 (306)
T 1pa2_A 15 ASAIVRSTIQQALQSDTRIGASLIRLHFHDCFV 47 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCccchhhhhhhhhhccc
Confidence 356789999999999999999999999999865
No 24
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Probab=82.38 E-value=0.63 Score=40.04 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=21.7
Q ss_pred CCCchhHHHHHHhcccccccccc
Q 046960 109 NPDLIPSLLTLALNDAMTYDKVR 131 (165)
Q Consensus 109 ~peliPslltLaLNDA~TYDKaT 131 (165)
-|+.+|.+|||+.-|+.|||+.+
T Consensus 34 Cp~~~~~llRLafHDc~ty~~sd 56 (343)
T 1llp_A 34 CGAEAHESIRLVFHDSIAISPAM 56 (343)
T ss_dssp CSHHHHHHHHHHHHHHTCCCHHH
T ss_pred CchhHHHHHHHHHhhhhcccccc
Confidence 58889999999999999999998
No 25
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A*
Probab=82.23 E-value=0.58 Score=40.17 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCCchhHHHHHHhcccccccccc
Q 046960 109 NPDLIPSLLTLALNDAMTYDKVR 131 (165)
Q Consensus 109 ~peliPslltLaLNDA~TYDKaT 131 (165)
-|+++|.+|||+.-|+.|||+.+
T Consensus 43 Cp~~a~~llRLafHDc~vy~~sd 65 (344)
T 2e39_A 43 CESPVRKILRIVFHDAIGFSPAL 65 (344)
T ss_dssp CSHHHHHHHHHHHHHHTCCCHHH
T ss_pred ccHHHHHHHHHHHhhhhcccccc
Confidence 47779999999999999999998
No 26
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1
Probab=81.24 E-value=0.79 Score=38.68 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960 95 ISNIKETLQTALKGNPDLIPSLLTLALNDAMTY 127 (165)
Q Consensus 95 qs~ik~~L~~ai~~~peliPslltLaLNDA~TY 127 (165)
.+.|+..++++++.+|.+.|++|||+..|+.+|
T Consensus 22 e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~ 54 (309)
T 1bgp_A 22 ESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQ 54 (309)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccccccceEeeecccC
Confidence 467889999999999999999999999999776
No 27
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1
Probab=81.22 E-value=1.1 Score=37.63 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960 94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTY 127 (165)
Q Consensus 94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TY 127 (165)
..+.++..++++++.+|.+.|++|||+.-|+.++
T Consensus 14 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~ 47 (300)
T 1qgj_A 14 LVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVN 47 (300)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCCCCccchheeeeecccC
Confidence 3567889999999999999999999999999765
No 28
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1
Probab=80.31 E-value=0.92 Score=38.14 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960 94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTY 127 (165)
Q Consensus 94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TY 127 (165)
..+.|++.++++++.+|.+.|++|||+.-|+.++
T Consensus 14 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~ 47 (304)
T 1fhf_A 14 LFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQ 47 (304)
T ss_dssp HHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCCcchhhhhhheeeecccC
Confidence 3567899999999999999999999999998654
No 29
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0
Probab=73.44 E-value=2.4 Score=35.73 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHhcccc
Q 046960 94 FISNIKETLQTALKGNPDLIPSLLTLALNDAM 125 (165)
Q Consensus 94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~ 125 (165)
..+.|+..++++++.+|.+.|++|||...|..
T Consensus 14 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCf 45 (304)
T 3hdl_A 14 AESLVQQAVAAAFANNSGIAPGLIRMHFHDCF 45 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHheeccc
Confidence 45678999999999999999999999999875
No 30
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1
Probab=72.46 E-value=2.1 Score=35.85 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHhccccc
Q 046960 94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMT 126 (165)
Q Consensus 94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~T 126 (165)
..+.|++.++++++.+|-+.|++|||+.-|+.+
T Consensus 14 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv 46 (294)
T 1sch_A 14 ALSTIKSAVNSAVAKEARMGASLLRLHFHDCFV 46 (294)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCccccceeheecCC
Confidence 456789999999999999999999999999853
No 31
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=47.18 E-value=11 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=12.9
Q ss_pred ccchhhhhhhhhhhhhhhh
Q 046960 53 FGRRDILKCIGATIGMEII 71 (165)
Q Consensus 53 frRRDlL~c~GaAvGmeLI 71 (165)
..|||+||..+++.+.-..
T Consensus 3 lsRR~FLK~~aaa~Aaaaa 21 (35)
T 2pq4_B 3 LSRRSFMKANAVAAAAAAA 21 (35)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 5799999876665554433
No 32
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=40.25 E-value=14 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCCchhHHHH
Q 046960 99 KETLQTALKGNPDLIPSLLT 118 (165)
Q Consensus 99 k~~L~~ai~~~peliPsllt 118 (165)
...|+.+|+.||+++|.+|.
T Consensus 13 f~~lR~~vq~NP~~L~~lLq 32 (61)
T 2f4m_B 13 FQQMRQIIQQNPSLLPALLQ 32 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHH
Confidence 46789999999999999886
No 33
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=36.93 E-value=15 Score=25.63 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCchhHHHH
Q 046960 100 ETLQTALKGNPDLIPSLLT 118 (165)
Q Consensus 100 ~~L~~ai~~~peliPsllt 118 (165)
..|+.+|+.||+++|.+|.
T Consensus 16 ~qlR~~vqqNP~lL~~lLq 34 (72)
T 1pve_A 16 QQMRQIIQQNPSLLPALLQ 34 (72)
T ss_dssp TTHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHH
Confidence 3688999999999999886
No 34
>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV}
Probab=32.36 E-value=27 Score=25.64 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCch
Q 046960 86 IQRRQRSEFISNIKETLQTALKGNPDLI 113 (165)
Q Consensus 86 iqrrQrseFqs~ik~~L~~ai~~~peli 113 (165)
-|+++.+-|..+=|+.+..++|++||+.
T Consensus 53 ~~~E~l~l~LA~nkd~l~~~lKgkp~~L 80 (91)
T 3erm_A 53 KHAEDASIYMAKNRAVFAAAFKNNATAL 80 (91)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 4677788899999999999999999964
No 35
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=27.82 E-value=31 Score=23.48 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCCceeehhHHHHHHH
Q 046960 132 TKPLRFKCLVDVIKFL 147 (165)
Q Consensus 132 Ktg~~~~~~~~~~~~~ 147 (165)
.+|-|||...+|.+||
T Consensus 40 P~Gkr~RS~~ev~~YL 55 (72)
T 2ky8_A 40 PSGKKFRSKPQLARYL 55 (72)
T ss_dssp TTCCEEESHHHHHHHH
T ss_pred CCCCEeEcHHHHHHHH
Confidence 4999999999999998
No 36
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=26.76 E-value=41 Score=25.92 Aligned_cols=43 Identities=28% Similarity=0.401 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHhcccccccc
Q 046960 86 IQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDK 129 (165)
Q Consensus 86 iqrrQrseFqs~ik~~L~~ai~~~peliPslltLaLNDA~TYDK 129 (165)
+++++|++|+-.+--+=-...|-+|++ |.+|.-.+++-.|-|.
T Consensus 31 vp~~~Rgd~~R~allaGlAL~k~DpRL-P~LLA~~~~~~~t~~~ 73 (130)
T 2jd3_A 31 VPRSERGELFRNAFISGMALHQLDPRL-PVLLTAILSEEFSADQ 73 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTHH-HHHHHHHCSTTCCHHH
T ss_pred CCHHhhhHHHHHHHHHHHHHHhcChhH-HHHHHHHhcCCCCHHH
Confidence 568999999988766655666777875 7888888888777653
No 37
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=24.40 E-value=52 Score=19.36 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHH
Q 046960 92 SEFISNIKETLQTALKGNPDLIPSLLT 118 (165)
Q Consensus 92 seFqs~ik~~L~~ai~~~peliPsllt 118 (165)
.+++.-+++..+.++..+|+++-.-..
T Consensus 5 ~~l~~lL~~~~~~vl~~qP~di~~f~a 31 (41)
T 2izx_A 5 PGLTELLQGYTVEVLRQQPPDLVEFAV 31 (41)
T ss_dssp TTHHHHHHHHHHHHHHHCCSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 467788899999999999998765443
No 38
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=24.29 E-value=36 Score=23.45 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.7
Q ss_pred cccccccccCCCceeehhHHHHHHH
Q 046960 123 DAMTYDKVRTKPLRFKCLVDVIKFL 147 (165)
Q Consensus 123 DA~TYDKaTKtg~~~~~~~~~~~~~ 147 (165)
|..-|++ +|-|||...+|.+||
T Consensus 32 DvyY~sP---~Gkk~RS~~ev~ryL 53 (75)
T 1d9n_A 32 DTYYQSP---TGDRIRSKVELTRYL 53 (75)
T ss_dssp CEEEECS---SSCEECSTHHHHHHH
T ss_pred EEEEECC---CCCeeecHHHHHHHh
Confidence 4444444 899999999999998
No 39
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=22.05 E-value=1e+02 Score=18.75 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCch
Q 046960 88 RRQRSEFISNIKETLQTALKGNPDLI 113 (165)
Q Consensus 88 rrQrseFqs~ik~~L~~ai~~~peli 113 (165)
.+|+.+|...+-+.+.+++-..||.+
T Consensus 12 ~eqK~~L~~~it~~~~~~lg~~~~~v 37 (62)
T 3m20_A 12 VGKKREFVERLTSVAAEIYGMDRSAI 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceE
Confidence 57899999999999999998888875
No 40
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=22.04 E-value=59 Score=20.28 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 046960 90 QRSEFISNIKETLQTALKGNPDLIPSLLT 118 (165)
Q Consensus 90 QrseFqs~ik~~L~~ai~~~peliPsllt 118 (165)
+-.+|+.-+++..+.++..+|+++-....
T Consensus 11 ip~~l~~lL~~~~~evlr~qP~Di~~Faa 39 (50)
T 2kyg_A 11 IPPGLTELLQGYTVEVLRQQPPDLVEFAV 39 (50)
T ss_dssp CCTTHHHHHHHHHHHHHHHCCSCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 44678888999999999999998765543
No 41
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=21.66 E-value=43 Score=24.38 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.1
Q ss_pred ccccccccccCCCceeehhHHHHHHHH
Q 046960 122 NDAMTYDKVRTKPLRFKCLVDVIKFLY 148 (165)
Q Consensus 122 NDA~TYDKaTKtg~~~~~~~~~~~~~~ 148 (165)
.|..-|++ +|-+||...+|.+||-
T Consensus 44 ~DvYY~sP---~GkkfRSk~ev~ryL~ 67 (97)
T 3c2i_A 44 YDVYLINP---QGKAFRSKVELIMYFE 67 (97)
T ss_dssp EEEEEECT---TSCEECSHHHHHHHHH
T ss_pred ceEEEECC---CCCEEECHHHHHHHHH
Confidence 35555555 8999999999999984
No 42
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=21.00 E-value=50 Score=26.01 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=13.5
Q ss_pred HHHHHhhcCCCchhHHHH
Q 046960 101 TLQTALKGNPDLIPSLLT 118 (165)
Q Consensus 101 ~L~~ai~~~peliPsllt 118 (165)
.|+.+|+.||+++|.+|.
T Consensus 37 qlRq~vqqNPqlL~~lLq 54 (171)
T 2qsf_X 37 SLRQVVSGNPEALAPLLE 54 (171)
T ss_dssp HHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHH
Confidence 567777888887777765
No 43
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=20.72 E-value=54 Score=22.14 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.9
Q ss_pred cCCCceeehhHHHHHHHH
Q 046960 131 RTKPLRFKCLVDVIKFLY 148 (165)
Q Consensus 131 TKtg~~~~~~~~~~~~~~ 148 (165)
+.+|-|||...+|.+||-
T Consensus 32 sP~Gkk~RSk~ev~~yL~ 49 (69)
T 3vxv_A 32 SPQGLKFRSKRSLANYLL 49 (69)
T ss_dssp CTTSCEECSHHHHHHHHH
T ss_pred cCCCCEeeCHHHHHHHHH
Confidence 577999999999999884
No 44
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=20.12 E-value=76 Score=23.84 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=26.8
Q ss_pred hhhhhhhhh--------HHHHHHHHHHHHHHHHHHHHhhcC
Q 046960 77 VEMARAADL--------IQRRQRSEFISNIKETLQTALKGN 109 (165)
Q Consensus 77 ~~~A~AAdL--------iqrrQrseFqs~ik~~L~~ai~~~ 109 (165)
.|++.|+.- ++++|...|....+..|.+-++.|
T Consensus 10 ~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~H 50 (130)
T 2z15_A 10 LEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGH 50 (130)
T ss_dssp HHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 555665533 789999999999999999999863
Done!