BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046962
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 99/123 (80%)
Query: 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTIS 61
P GTLEV+LV AKGL+D DFL+NMDPYV L+CRTQ+++S+VA G GTTP WNE F+FT+S
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 62 EGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLT 121
EGTT LK KI D D ++DD VGEA IPL VF G++P AYNVVKD++++GE+ V L+
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127
Query: 122 FKP 124
FKP
Sbjct: 128 FKP 130
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT 65
+ + +VCA+GLQ D + DPYV + +KR+ G P W ENF F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG-NLNPVWEENFHFECHNSSD 77
Query: 66 ALKLKIMDSD-----TVSQ------DDFVGEAIIPLHSV 93
+K++++D D V Q DDF+G+ II + ++
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNENFVFT 59
L V +V L D DPYV LS ++ +A Q T P WNE F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 60 ISEGTTALKLKIMDSDTVSQDDFVGEAIIPL 90
++ L ++ D + +++DDF+G+ +PL
Sbjct: 83 VNPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3 KGTLEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTI 60
+ TL V ++ A+ L DF DP+V L + K + + P+WNE F+F
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF-- 82
Query: 61 SEG-------TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
EG L L+++D D S++D +GE IPL+ V
Sbjct: 83 -EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT------PNWNENFVFT 59
+ V ++ GL D L DPYV ++ + S Q T P WNE +F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTL-YDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 60 ISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD---------K 110
+ L ++ D + +++DDF+G+ +PL+ + ++ Y KD
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT-FKDFVLHPRSHKS 139
Query: 111 KFQGEVRVGLTFKP 124
+ +G +R+ +T+ P
Sbjct: 140 RVKGYLRLKMTYLP 153
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
G L+V ++ A L DF DP+ +L ++ + P WN+ F F I +
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI 71
Query: 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
L++ + D D DF+G+ IPL S+
Sbjct: 72 HDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGT-------TPNWNENFVF 58
+ V ++ GL D L DPYV ++ + S + + T P WNE +F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTL--YDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 59 TISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD--------- 109
+ + ++ D + +++DDF+G+ +PL+ + ++ Y KD
Sbjct: 68 RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPY-TFKDFVLHPRSHK 126
Query: 110 KKFQGEVRVGLTFKP 124
+ +G +R+ +T+ P
Sbjct: 127 SRVKGYLRLKMTYLP 141
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 23 SNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGTTAL-KLKIMDSDT 76
S +DP V++ T ++++V + G P W+ F F ++ AL + + D D+
Sbjct: 516 SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS 575
Query: 77 VSQDDFVGEAIIPLHSV 93
S++DF+G++ IP +S+
Sbjct: 576 SSKNDFIGQSTIPWNSL 592
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 23 SNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGTTAL-KLKIMDSDT 76
S +DP V++ T ++++V + G P W+ F F ++ AL + + D D+
Sbjct: 518 SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS 577
Query: 77 VSQDDFVGEAIIPLHSV 93
S++DF+G++ IP +S+
Sbjct: 578 SSKNDFIGQSTIPWNSL 594
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 7 EVLLVC---AKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFT 59
EVL+V AK L D DPYV L +++ K+ + P WNE F F
Sbjct: 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ 231
Query: 60 ISEGTT--ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
+ E L ++I D D S++DF+G + + +AG
Sbjct: 232 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 7 EVLLVC---AKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFT 59
EVL+V AK L D DPYV L +++ K+ + P WNE F F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 60 ISEGTTALKL--KIMDSDTVSQDDFVGEAIIPLHSVFEAG 97
+ E +L +I D D S++DF+G + + +AG
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFTI- 60
L V + AK L D DPYV L + + K+ + P WNE+F F +
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 61 -SEGTTALKLKIMDSDTVSQDDFVG 84
S+ L ++I D D +++DF+G
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMG 103
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFTI- 60
L V + AK L D DPYV L + + K+ + P WNE+F F +
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 61 -SEGTTALKLKIMDSDTVSQDDFVG 84
S+ L ++I D D +++DF+G
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMG 102
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFTI- 60
L V + AK L D DPYV L + + K+ + P WNE+F F +
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 61 -SEGTTALKLKIMDSDTVSQDDFVG 84
S+ L ++I D D +++DF G
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXG 104
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 26 DPYVVLSC----RTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKL--KIMDSDTVSQ 79
DPYV L R K+ + P WNE FVF + G +L ++ D D S+
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSR 101
Query: 80 DDFVG 84
+DF+G
Sbjct: 102 NDFMG 106
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 4 GTLEVLLVCAKGLQDTDFLSNMDPYV-------------VLSCRTQEKRSSVASGQGTTP 50
G L + ++ A+ L D DP+V V + + KR + + P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 51 NWNENFVF-TISEG---TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQ 101
WN+ ++ +IS L++ + D D S +DF+GE +I L S N P+
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPR 132
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASG----QGTTPNWNENFVFT 59
++ V ++ A+ L+ D DPYV + ++KR + P +NE+F F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 60 ISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHS 92
I T + + +MD D +S++D +G+ + S
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 -
Rim Heterodimer Switch: C2-Domains As Versatile
Protein- Protein Interaction Modules
Length = 131
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
G + +L V K + + YV L + Q +S+ + +G+ P+W ++F+F I+
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEKFNTYVTL--KVQNVKSTTIAVRGSQPSWEQDFMFEINRL 59
Query: 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96
L +++ + + D VG IPL ++ ++
Sbjct: 60 DLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQS 91
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTI--S 61
L V ++ A L D DPYV L ++K + + P +NE F F + S
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 62 E-GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
E G L + + D D S+ D +GE +P+++V + G+V ++
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-DFGHVTEE 119
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTI--S 61
L V ++ A L D DPYV L ++K + + P +NE F F + S
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 62 E-GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
E G L + + D D S+ D +GE +P+++V + G+V ++
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-DFGHVTEE 136
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 13 AKGLQDTDFLS-NMDPYVVLSCRTQEKRSSVASG---QGTTPNWNENFVF------TISE 62
A+GL D S DPY+ ++ EK+ V + + P ++E F F I E
Sbjct: 31 ARGLPAMDEQSMTSDPYIKMTI-LPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQE 89
Query: 63 GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
AL I+ D S+DD +GE +IPL +
Sbjct: 90 --LALHFTILSFDRFSRDDIIGEVLIPLSGI 118
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTI--S 61
L V ++ A L D DPYV L ++K + + P +NE F F + S
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 62 E-GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
E G L + + D D S+ D +GE +P+++V + G+V ++
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-DFGHVTEE 136
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTI--S 61
L V ++ A L D DPYV L ++K + + P +NE F F + S
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 62 E-GTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
E G L + + D D S+ D +GE +P+++V + G+V ++
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-DFGHVTEE 144
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 25 MDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVG 84
+DPY+ L+ + + +P W++ FV + G ++L + + DDFV
Sbjct: 38 LDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRK-IELAVFHDAPIGYDDFVA 96
Query: 85 EAIIPLHSVFEAGN 98
I + + G+
Sbjct: 97 NCTIQFEELLQNGS 110
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYV--VLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG 63
L V ++ A L D DPYV L ++K + + P +NE F F +
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 64 TTA---LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102
A L + + D D S+ D +GE +P+++V + G+V ++
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-DFGHVTEE 121
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASG--QGTTPN--WNENFVFTI 60
TL V+++ A+ L +D DPYV ++ +KR S + TPN +NE FVF I
Sbjct: 31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 90
Query: 61 ---SEGTTALKLKIMDSDTVSQDDFVGEAII 88
S +++ ++DS+ S+++ +G ++
Sbjct: 91 PCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 28 YVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAI 87
YV L + Q S+ + +G+ P+W ++F+F I+ L +++ + + D VG
Sbjct: 35 YVTL--KVQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGTVW 91
Query: 88 IPLHSV 93
IPL ++
Sbjct: 92 IPLRTI 97
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVL-----SCRTQEKRSSVASGQGTTPNWNENFVFT- 59
L+ ++ AKGL+ D DPYV L + ++ + R+ P WNE +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT-RNPVWNETLQYHG 89
Query: 60 ISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
I+E L++ + D D ++F+GE L +
Sbjct: 90 ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVL-----SCRTQEKRSSVASGQGTTPNWNENFVFT- 59
L+ ++ AKGL+ D DPYV L + ++ + R+ P WNE +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT-RNPVWNETLQYHG 87
Query: 60 ISE---GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
I+E L++ + D D ++F+GE L +
Sbjct: 88 ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGT-TPNWNENFVFTISE 62
G L V ++ A L+ +PY +S +Q + + Q T P WN N F I +
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQS--YTTRTIQDTLNPKWNFNCQFFIKD 444
Query: 63 -GTTALKLKIMDSDTVSQDDFVGEAIIPLHSV 93
L L + D D S DDF+G IP+ +
Sbjct: 445 LYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 4 GTLEVLLVCAKGLQDTDFLSN----------MDPYVVLSCRTQEKRSSVASGQGTT-PNW 52
G L V + A GLQ T + +DPY+ +S Q + ++ Q T P +
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-DQVRVGQTSTKQKTNKPTY 87
Query: 53 NENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFE 95
NE F +++G L+L + + D FV + +
Sbjct: 88 NEEFCANVTDG-GHLELAVFHETPLGYDHFVANCTLQFQELLR 129
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT-PNWNENFVFTISE 62
L + ++CAK L DF DP+ + + S + + T P WN+++ I +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGK 62
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTT-PNWNENF 56
+ + ++CAK L DF DP+ + + S + + T P WN+++
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHY 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,751,817
Number of Sequences: 62578
Number of extensions: 138629
Number of successful extensions: 290
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 33
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)