Query 046962
Match_columns 161
No_of_seqs 122 out of 1396
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2.9E-26 6.2E-31 148.7 15.4 118 3-122 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 4E-24 8.6E-29 138.7 13.9 117 4-122 1-118 (118)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 3.4E-23 7.4E-28 135.8 13.7 115 6-121 1-126 (126)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 5.9E-23 1.3E-27 133.8 14.7 118 5-124 1-121 (121)
5 cd04044 C2A_Tricalbin-like C2 99.9 7.1E-23 1.5E-27 133.8 13.9 121 3-124 1-124 (124)
6 cd04022 C2A_MCTP_PRT_plant C2 99.9 1E-22 2.2E-27 133.8 14.0 118 5-123 1-126 (127)
7 cd08375 C2_Intersectin C2 doma 99.9 5.7E-22 1.2E-26 131.4 15.4 120 2-122 13-135 (136)
8 cd04014 C2_PKC_epsilon C2 doma 99.9 8.9E-22 1.9E-26 130.1 16.2 120 1-125 1-131 (132)
9 cd08377 C2C_MCTP_PRT C2 domain 99.9 6E-22 1.3E-26 128.6 15.1 116 4-123 1-119 (119)
10 cd08678 C2_C21orf25-like C2 do 99.9 6.1E-22 1.3E-26 129.9 15.2 118 6-127 1-124 (126)
11 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 6.9E-22 1.5E-26 128.6 14.8 115 6-122 2-121 (121)
12 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 8.3E-22 1.8E-26 130.4 14.8 118 5-123 1-133 (133)
13 cd04019 C2C_MCTP_PRT_plant C2 99.9 9.5E-22 2.1E-26 132.3 14.7 121 6-126 2-135 (150)
14 cd08379 C2D_MCTP_PRT_plant C2 99.9 8.7E-22 1.9E-26 128.5 13.2 111 6-118 2-125 (126)
15 cd04024 C2A_Synaptotagmin-like 99.9 1.3E-21 2.8E-26 128.6 14.0 118 4-122 1-128 (128)
16 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 2.5E-21 5.4E-26 126.1 15.0 115 6-121 2-120 (121)
17 cd08400 C2_Ras_p21A1 C2 domain 99.9 4E-21 8.6E-26 126.0 15.7 117 4-125 4-125 (126)
18 cd04017 C2D_Ferlin C2 domain f 99.9 4.5E-21 9.7E-26 127.2 15.8 120 5-125 2-134 (135)
19 cd08376 C2B_MCTP_PRT C2 domain 99.9 3.1E-21 6.7E-26 124.7 14.5 114 5-123 1-115 (116)
20 cd04046 C2_Calpain C2 domain p 99.9 7.8E-21 1.7E-25 124.6 15.6 119 2-125 1-124 (126)
21 cd08378 C2B_MCTP_PRT_plant C2 99.9 3.1E-21 6.6E-26 125.6 13.2 111 6-122 2-119 (121)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 5E-21 1.1E-25 125.0 14.2 114 5-120 1-122 (123)
23 KOG1030 Predicted Ca2+-depende 99.9 1.4E-21 3.1E-26 130.1 11.4 97 1-98 3-99 (168)
24 cd04015 C2_plant_PLD C2 domain 99.9 1.9E-20 4.2E-25 127.0 15.4 118 3-123 6-158 (158)
25 cd04036 C2_cPLA2 C2 domain pre 99.9 1.5E-20 3.3E-25 122.1 13.4 113 6-123 2-118 (119)
26 cd08382 C2_Smurf-like C2 domai 99.9 3.1E-20 6.7E-25 121.3 14.2 114 5-120 1-122 (123)
27 cd08391 C2A_C2C_Synaptotagmin_ 99.9 2.3E-20 5E-25 121.4 13.5 114 4-122 1-121 (121)
28 cd04051 C2_SRC2_like C2 domain 99.9 8E-21 1.7E-25 124.4 11.3 114 5-118 1-125 (125)
29 cd08677 C2A_Synaptotagmin-13 C 99.9 8E-21 1.7E-25 121.7 10.9 99 3-105 13-117 (118)
30 cd04027 C2B_Munc13 C2 domain s 99.9 4.4E-20 9.6E-25 121.2 14.5 113 4-120 1-127 (127)
31 cd08381 C2B_PI3K_class_II C2 d 99.9 1.6E-20 3.4E-25 122.4 11.9 101 3-106 12-121 (122)
32 cd04045 C2C_Tricalbin-like C2 99.8 7.8E-20 1.7E-24 118.8 13.8 105 4-111 1-106 (120)
33 cd08395 C2C_Munc13 C2 domain t 99.8 4.9E-20 1.1E-24 119.2 12.6 101 5-107 1-111 (120)
34 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.3E-20 7.1E-25 121.4 11.3 102 3-106 14-124 (125)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 8.1E-20 1.8E-24 121.9 13.3 104 3-108 28-138 (146)
36 cd08392 C2A_SLP-3 C2 domain fi 99.8 4.7E-20 1E-24 121.0 12.0 103 3-106 14-127 (128)
37 cd08373 C2A_Ferlin C2 domain f 99.8 2.2E-19 4.7E-24 117.9 15.1 117 10-130 2-123 (127)
38 cd04010 C2B_RasA3 C2 domain se 99.8 4.6E-20 9.9E-25 123.6 11.9 100 5-107 1-121 (148)
39 cd08680 C2_Kibra C2 domain fou 99.8 3.6E-20 7.7E-25 120.7 11.1 103 3-106 13-124 (124)
40 cd04049 C2_putative_Elicitor-r 99.8 1.2E-19 2.7E-24 118.6 13.6 103 4-107 1-107 (124)
41 cd04043 C2_Munc13_fungal C2 do 99.8 3.3E-19 7E-24 116.9 14.8 115 5-124 2-122 (126)
42 cd08394 C2A_Munc13 C2 domain f 99.8 1.5E-19 3.3E-24 116.9 12.8 99 3-107 1-100 (127)
43 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.1E-19 2.4E-24 118.8 12.1 103 3-107 15-123 (124)
44 cd04039 C2_PSD C2 domain prese 99.8 1.3E-19 2.9E-24 115.5 12.2 94 4-98 1-100 (108)
45 cd04029 C2A_SLP-4_5 C2 domain 99.8 2E-19 4.4E-24 117.6 13.1 104 2-107 13-125 (125)
46 cd04041 C2A_fungal C2 domain f 99.8 1.4E-19 3.1E-24 116.1 11.3 99 4-107 1-107 (111)
47 cd04050 C2B_Synaptotagmin-like 99.8 2.1E-19 4.6E-24 114.2 11.6 99 5-107 1-101 (105)
48 cd08688 C2_KIAA0528-like C2 do 99.8 2.1E-19 4.6E-24 115.1 10.9 101 6-107 1-108 (110)
49 cd08385 C2A_Synaptotagmin-1-5- 99.8 4.7E-19 1E-23 115.8 12.6 102 3-106 15-122 (124)
50 PLN03008 Phospholipase D delta 99.8 8.3E-19 1.8E-23 141.6 16.5 149 4-155 14-209 (868)
51 cd04018 C2C_Ferlin C2 domain t 99.8 4.6E-19 1E-23 119.0 12.5 102 5-107 1-124 (151)
52 cd04031 C2A_RIM1alpha C2 domai 99.8 4.6E-19 1E-23 115.9 11.9 101 3-106 15-124 (125)
53 cd08685 C2_RGS-like C2 domain 99.8 3.4E-19 7.4E-24 115.6 10.6 101 3-106 11-119 (119)
54 cd04030 C2C_KIAA1228 C2 domain 99.8 9.2E-19 2E-23 114.8 12.3 102 3-106 15-126 (127)
55 cd04038 C2_ArfGAP C2 domain pr 99.8 1.5E-18 3.3E-23 116.0 12.3 93 3-97 1-93 (145)
56 cd04021 C2_E3_ubiquitin_ligase 99.8 6.3E-18 1.4E-22 110.6 14.7 113 5-120 3-124 (125)
57 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.7E-18 5.9E-23 112.3 12.9 104 2-107 14-124 (125)
58 cd08691 C2_NEDL1-like C2 domai 99.8 8.8E-18 1.9E-22 111.2 14.8 113 5-120 2-136 (137)
59 cd08521 C2A_SLP C2 domain firs 99.8 3.1E-18 6.8E-23 111.7 12.4 102 3-106 13-123 (123)
60 cd08388 C2A_Synaptotagmin-4-11 99.8 3.2E-18 6.9E-23 112.4 12.3 103 3-106 15-126 (128)
61 cd04013 C2_SynGAP_like C2 doma 99.8 1.5E-17 3.1E-22 110.8 15.0 116 4-126 11-142 (146)
62 cd04032 C2_Perforin C2 domain 99.8 3.4E-18 7.4E-23 111.7 11.6 91 3-95 27-119 (127)
63 cd04040 C2D_Tricalbin-like C2 99.8 5.8E-18 1.3E-22 109.2 12.5 109 6-116 1-112 (115)
64 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 4E-18 8.7E-23 116.1 12.1 104 2-107 25-137 (162)
65 cd08690 C2_Freud-1 C2 domain f 99.8 1.7E-17 3.7E-22 111.6 14.9 123 4-128 4-142 (155)
66 cd08390 C2A_Synaptotagmin-15-1 99.8 6.9E-18 1.5E-22 110.1 12.7 102 3-106 13-121 (123)
67 cd04052 C2B_Tricalbin-like C2 99.8 4.6E-18 9.9E-23 109.1 11.3 99 22-124 10-110 (111)
68 cd08676 C2A_Munc13-like C2 dom 99.8 5.4E-18 1.2E-22 114.0 12.0 99 1-106 25-153 (153)
69 cd04011 C2B_Ferlin C2 domain s 99.8 1.1E-17 2.3E-22 107.4 12.6 99 4-107 4-109 (111)
70 cd08389 C2A_Synaptotagmin-14_1 99.8 5.8E-18 1.3E-22 110.6 11.4 102 3-107 15-123 (124)
71 cd08383 C2A_RasGAP C2 domain ( 99.8 1.4E-17 3.1E-22 107.6 12.8 109 6-122 2-117 (117)
72 KOG1028 Ca2+-dependent phospho 99.8 1.5E-17 3.2E-22 128.4 13.7 124 3-128 166-299 (421)
73 cd04037 C2E_Ferlin C2 domain f 99.8 1.3E-17 2.9E-22 109.0 11.4 117 6-125 2-121 (124)
74 cd04009 C2B_Munc13-like C2 dom 99.8 1E-17 2.2E-22 110.8 10.9 93 3-96 15-119 (133)
75 cd08675 C2B_RasGAP C2 domain s 99.8 1.4E-17 3E-22 110.6 11.5 99 6-107 1-119 (137)
76 cd04026 C2_PKC_alpha_gamma C2 99.8 1.6E-17 3.6E-22 109.5 11.4 101 4-107 13-120 (131)
77 cd08384 C2B_Rabphilin_Doc2 C2 99.8 6.6E-18 1.4E-22 111.7 9.2 101 3-107 12-120 (133)
78 cd08402 C2B_Synaptotagmin-1 C2 99.8 2.2E-17 4.8E-22 109.6 11.2 102 2-107 13-122 (136)
79 cd00275 C2_PLC_like C2 domain 99.7 1.8E-16 3.8E-21 104.0 15.1 114 4-122 2-127 (128)
80 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.5E-17 3.2E-22 110.4 9.1 101 3-107 14-122 (136)
81 cd08407 C2B_Synaptotagmin-13 C 99.7 2.9E-17 6.2E-22 108.8 10.2 90 3-92 14-112 (138)
82 cd08406 C2B_Synaptotagmin-12 C 99.7 3.7E-17 8E-22 108.3 9.8 89 3-92 14-110 (136)
83 cd04048 C2A_Copine C2 domain f 99.7 2.3E-16 5E-21 102.5 11.4 96 9-106 5-112 (120)
84 cd08408 C2B_Synaptotagmin-14_1 99.7 1.4E-16 3E-21 105.9 10.3 102 3-107 14-124 (138)
85 cd00276 C2B_Synaptotagmin C2 d 99.7 6.2E-17 1.3E-21 107.0 8.4 102 3-108 13-122 (134)
86 PLN03200 cellulose synthase-in 99.7 7.5E-17 1.6E-21 140.4 11.0 117 3-124 1979-2101(2102)
87 cd08403 C2B_Synaptotagmin-3-5- 99.7 2E-16 4.4E-21 104.7 10.3 102 2-107 12-121 (134)
88 cd08410 C2B_Synaptotagmin-17 C 99.7 2.7E-16 5.8E-21 104.2 10.5 103 2-107 12-122 (135)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.7 7.8E-16 1.7E-20 100.4 12.2 94 3-98 14-116 (123)
90 cd08405 C2B_Synaptotagmin-7 C2 99.7 2.7E-16 5.8E-21 104.4 10.1 90 3-93 14-111 (136)
91 cd08692 C2B_Tac2-N C2 domain s 99.7 7.3E-16 1.6E-20 101.1 10.8 90 3-93 13-110 (135)
92 cd08409 C2B_Synaptotagmin-15 C 99.7 9.9E-16 2.1E-20 101.7 10.7 101 3-106 14-122 (137)
93 cd08686 C2_ABR C2 domain in th 99.7 1.5E-15 3.2E-20 97.2 10.8 80 6-92 1-92 (118)
94 KOG0696 Serine/threonine prote 99.7 3.9E-17 8.4E-22 123.1 3.8 101 4-107 180-287 (683)
95 cd04047 C2B_Copine C2 domain s 99.6 4.2E-15 9.1E-20 95.1 11.2 88 7-96 3-101 (110)
96 COG5038 Ca2+-dependent lipid-b 99.6 4.6E-15 9.9E-20 122.4 13.1 145 2-146 434-582 (1227)
97 PF00168 C2: C2 domain; Inter 99.6 2.2E-14 4.9E-19 87.0 8.7 81 6-87 1-85 (85)
98 KOG1011 Neurotransmitter relea 99.6 1.1E-14 2.5E-19 114.4 8.5 121 4-128 295-429 (1283)
99 KOG2059 Ras GTPase-activating 99.5 2.7E-14 5.8E-19 112.7 9.0 121 5-128 6-130 (800)
100 cd00030 C2 C2 domain. The C2 d 99.5 1.6E-13 3.6E-18 85.0 11.0 100 6-106 1-102 (102)
101 PLN02270 phospholipase D alpha 99.5 7.4E-13 1.6E-17 107.5 16.5 150 3-155 7-179 (808)
102 smart00239 C2 Protein kinase C 99.5 5E-13 1.1E-17 83.1 11.3 92 5-97 1-96 (101)
103 PLN02223 phosphoinositide phos 99.4 1.5E-11 3.2E-16 96.4 14.0 99 4-107 409-518 (537)
104 PLN02952 phosphoinositide phos 99.4 1.9E-11 4.2E-16 97.4 14.1 114 4-122 470-596 (599)
105 cd08374 C2F_Ferlin C2 domain s 99.4 1.7E-11 3.7E-16 80.4 10.3 91 6-97 2-125 (133)
106 KOG1028 Ca2+-dependent phospho 99.3 1.3E-11 2.9E-16 95.6 10.2 90 3-92 297-393 (421)
107 cd08689 C2_fungal_Pkc1p C2 dom 99.3 8.6E-12 1.9E-16 77.6 7.0 85 6-96 1-89 (109)
108 COG5038 Ca2+-dependent lipid-b 99.3 1.9E-11 4E-16 101.6 10.3 120 3-124 1039-1162(1227)
109 KOG0169 Phosphoinositide-speci 99.3 5.9E-11 1.3E-15 95.1 11.9 115 5-123 617-744 (746)
110 PLN02230 phosphoinositide phos 99.3 1.1E-10 2.4E-15 93.0 13.4 93 3-96 468-572 (598)
111 PLN02352 phospholipase D epsil 99.3 2.4E-10 5.2E-15 92.9 14.3 144 3-155 9-161 (758)
112 PLN02222 phosphoinositide phos 99.2 5.7E-10 1.2E-14 88.8 14.3 92 4-96 452-555 (581)
113 PLN02228 Phosphoinositide phos 99.2 7.7E-10 1.7E-14 87.9 14.3 118 4-126 431-564 (567)
114 KOG1264 Phospholipase C [Lipid 99.2 3.1E-10 6.7E-15 91.6 11.6 123 3-130 1064-1196(1267)
115 KOG1328 Synaptic vesicle prote 99.2 7.3E-12 1.6E-16 99.7 1.6 122 6-129 116-307 (1103)
116 KOG1031 Predicted Ca2+-depende 99.1 1.4E-09 3.1E-14 85.4 9.8 120 2-122 1-135 (1169)
117 KOG1328 Synaptic vesicle prote 98.9 6.3E-10 1.4E-14 89.0 2.1 90 5-95 948-1049(1103)
118 KOG2059 Ras GTPase-activating 98.8 2.7E-08 5.8E-13 79.5 7.0 100 23-124 149-277 (800)
119 KOG1326 Membrane-associated pr 98.5 6.5E-08 1.4E-12 79.8 3.4 89 4-92 613-703 (1105)
120 cd08683 C2_C2cd3 C2 domain fou 98.5 2.8E-07 6.2E-12 59.4 5.2 100 6-106 1-143 (143)
121 KOG0905 Phosphoinositide 3-kin 98.4 2.6E-07 5.6E-12 77.7 4.9 102 3-106 1523-1633(1639)
122 KOG1452 Predicted Rho GTPase-a 98.3 1.3E-06 2.8E-11 64.3 5.8 116 3-123 50-167 (442)
123 KOG1326 Membrane-associated pr 98.2 4.4E-07 9.5E-12 75.1 0.3 113 6-121 208-330 (1105)
124 KOG2060 Rab3 effector RIM1 and 98.1 1.7E-06 3.6E-11 65.0 2.9 104 3-107 268-378 (405)
125 KOG1013 Synaptic vesicle prote 98.1 6.1E-06 1.3E-10 61.1 4.9 86 4-89 233-325 (362)
126 KOG1013 Synaptic vesicle prote 98.0 6.9E-07 1.5E-11 65.9 -0.7 124 4-128 93-234 (362)
127 PLN02964 phosphatidylserine de 98.0 1.5E-05 3.2E-10 64.9 6.3 85 4-96 54-140 (644)
128 cd08684 C2A_Tac2-N C2 domain f 98.0 8.4E-06 1.8E-10 49.2 3.1 88 6-96 1-95 (103)
129 KOG1011 Neurotransmitter relea 97.9 9.5E-05 2.1E-09 59.6 8.7 101 5-107 1126-1236(1283)
130 PF10358 NT-C2: N-terminal C2 97.8 0.0025 5.4E-08 42.3 13.6 121 4-128 7-140 (143)
131 KOG3837 Uncharacterized conser 97.8 3.5E-05 7.5E-10 58.8 4.7 116 6-123 369-503 (523)
132 PF15627 CEP76-C2: CEP76 C2 do 97.7 0.00096 2.1E-08 44.9 10.3 122 5-127 10-154 (156)
133 PF12416 DUF3668: Cep120 prote 97.7 0.0018 3.9E-08 49.2 12.5 119 6-128 2-137 (340)
134 KOG1327 Copine [Signal transdu 97.5 0.00032 6.9E-09 55.6 6.8 83 11-95 143-236 (529)
135 KOG1265 Phospholipase C [Lipid 97.5 0.00022 4.9E-09 59.2 5.9 86 3-96 702-797 (1189)
136 cd08687 C2_PKN-like C2 domain 97.4 0.0034 7.4E-08 38.2 8.4 85 24-122 8-92 (98)
137 cd08398 C2_PI3K_class_I_alpha 97.2 0.02 4.3E-07 38.9 11.8 86 4-94 8-107 (158)
138 cd04012 C2A_PI3K_class_II C2 d 97.1 0.0051 1.1E-07 42.3 8.3 92 3-94 7-120 (171)
139 cd08693 C2_PI3K_class_I_beta_d 97.1 0.012 2.6E-07 40.6 9.7 89 4-95 8-122 (173)
140 cd08380 C2_PI3K_like C2 domain 96.7 0.028 6.1E-07 37.9 9.2 91 4-95 8-109 (156)
141 cd08397 C2_PI3K_class_III C2 d 96.6 0.022 4.7E-07 38.7 8.1 70 23-93 28-107 (159)
142 PF11618 DUF3250: Protein of u 96.6 0.036 7.7E-07 35.1 8.1 94 28-123 2-105 (107)
143 cd08399 C2_PI3K_class_I_gamma 95.0 0.3 6.5E-06 33.8 8.2 70 4-75 10-88 (178)
144 KOG1327 Copine [Signal transdu 94.5 0.17 3.7E-06 40.7 6.6 57 39-96 44-105 (529)
145 KOG0694 Serine/threonine prote 94.4 0.019 4.2E-07 47.0 1.3 100 23-127 26-125 (694)
146 PF15625 CC2D2AN-C2: CC2D2A N- 94.3 0.83 1.8E-05 31.3 9.0 71 24-95 36-108 (168)
147 PF00792 PI3K_C2: Phosphoinosi 94.2 0.77 1.7E-05 30.4 8.5 47 48-94 32-86 (142)
148 PF14429 DOCK-C2: C2 domain in 94.1 0.52 1.1E-05 32.7 7.9 52 41-92 63-120 (184)
149 cd08695 C2_Dock-B C2 domains f 93.2 0.55 1.2E-05 32.8 6.6 52 39-91 56-112 (189)
150 cd08694 C2_Dock-A C2 domains f 92.6 1.6 3.5E-05 30.7 8.3 52 39-91 56-114 (196)
151 PTZ00447 apical membrane antig 91.5 5.2 0.00011 30.8 11.1 97 24-122 73-172 (508)
152 cd08679 C2_DOCK180_related C2 91.5 1.2 2.5E-05 30.8 6.6 52 40-92 56-115 (178)
153 smart00142 PI3K_C2 Phosphoinos 90.3 3 6.5E-05 25.9 7.3 69 6-75 13-91 (100)
154 cd08696 C2_Dock-C C2 domains f 89.2 3 6.6E-05 28.9 7.0 52 40-92 58-118 (179)
155 cd08697 C2_Dock-D C2 domains f 88.5 4.1 8.9E-05 28.5 7.3 53 39-92 59-123 (185)
156 PF14924 DUF4497: Protein of u 78.1 14 0.00031 23.4 6.1 59 65-123 29-104 (112)
157 KOG1329 Phospholipase D1 [Lipi 77.6 6.4 0.00014 33.9 5.4 102 25-128 138-245 (887)
158 PF10409 PTEN_C2: C2 domain of 76.1 18 0.0004 23.4 9.6 91 3-94 3-98 (134)
159 cd05137 RasGAP_CLA2_BUD2 CLA2/ 67.4 9.6 0.00021 30.0 4.0 41 82-123 1-44 (395)
160 PF07162 B9-C2: Ciliary basal 60.2 52 0.0011 22.4 10.5 76 9-90 7-101 (168)
161 PF14909 SPATA6: Spermatogenes 51.1 72 0.0016 21.3 9.2 87 5-96 3-102 (140)
162 KOG0906 Phosphatidylinositol 3 49.1 14 0.00031 31.0 2.2 42 51-92 78-123 (843)
163 KOG4269 Rac GTPase-activating 47.2 11 0.00024 32.7 1.4 66 3-75 758-828 (1112)
164 KOG0904 Phosphatidylinositol 3 45.4 1.5E+02 0.0032 26.3 7.5 66 5-74 344-421 (1076)
165 PF12416 DUF3668: Cep120 prote 42.9 1.6E+02 0.0034 22.9 8.5 86 5-96 193-296 (340)
166 PF06219 DUF1005: Protein of u 34.1 2.5E+02 0.0054 22.6 9.6 103 24-126 35-170 (460)
167 PF01060 DUF290: Transthyretin 31.7 89 0.0019 18.3 3.3 24 65-88 12-35 (80)
168 KOG2419 Phosphatidylserine dec 26.5 15 0.00033 30.8 -0.8 31 24-55 304-334 (975)
169 KOG4027 Uncharacterized conser 21.2 2.9E+02 0.0062 19.0 8.4 26 65-90 83-108 (187)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.95 E-value=2.9e-26 Score=148.65 Aligned_cols=118 Identities=21% Similarity=0.415 Sum_probs=102.4
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~ 82 (161)
.|+|.|+|++|++++..+ .+.+||||.+.++....+|++..+++.||.|||+|.|.+......|.|+|||++.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 489999999999998877 7899999999999988888888756899999999999998766789999999999999999
Q ss_pred eEEEEEeCcc-ccccCCccceeEEeec--CCeeceEEEEEEEE
Q 046962 83 VGEAIIPLHS-VFEAGNVPQQAYNVVK--DKKFQGEVRVGLTF 122 (161)
Q Consensus 83 iG~~~~~l~~-l~~~~~~~~~~~~l~~--~~~~~G~i~l~l~~ 122 (161)
||.+.+++.+ +..+ .....||.|.. .....|+|+|+++|
T Consensus 80 iG~~~i~l~~~~~~g-~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-CCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999974 5544 43579999973 33567999999987
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.92 E-value=4e-24 Score=138.71 Aligned_cols=117 Identities=30% Similarity=0.561 Sum_probs=102.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCce
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~ 82 (161)
|.|.|+|++|++|+..+..+.+||||.+.++....+|+.+.+.+.||.|+|.|.|.+... ...|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 689999999999999998899999999999987778887765689999999999999874 458999999999875 899
Q ss_pred eEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEE
Q 046962 83 VGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTF 122 (161)
Q Consensus 83 iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~ 122 (161)
||++.+++.++..+.. ...|+.|...++..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~-~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGE-FDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCC-CCCcEEeccCCcEeeEEEEEEEC
Confidence 9999999999877543 46899998777889999999986
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.91 E-value=3.4e-23 Score=135.81 Aligned_cols=115 Identities=26% Similarity=0.487 Sum_probs=97.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC------CCCeEEEEEEecCCCCC
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE------GTTALKLKIMDSDTVSQ 79 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~------~~~~l~i~v~~~~~~~~ 79 (161)
+.|+|++|++|+..+..+.+||||.+.++....+|++.+ ++.||+|||+|.|.+.. ....|.|+||+++.+++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 479999999999998888999999999998888888777 88999999999999876 34689999999998888
Q ss_pred CceeEEEEEeCccccc-cCCccceeEEeec----CCeeceEEEEEEE
Q 046962 80 DDFVGEAIIPLHSVFE-AGNVPQQAYNVVK----DKKFQGEVRVGLT 121 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~-~~~~~~~~~~l~~----~~~~~G~i~l~l~ 121 (161)
|++||++.+++.++.. .+.....||.|.. ..+..|+|+|+++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999999999873 2234568999972 2346799999873
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.91 E-value=5.9e-23 Score=133.79 Aligned_cols=118 Identities=24% Similarity=0.381 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i 83 (161)
+|+|+|++|++|+..+..+.+||||.+.+... ..+|++.. ++.||.|+|+|.|.+......|.|+|||++..+++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence 48999999999999998899999999999864 44566665 89999999999999877667999999999999899999
Q ss_pred EEEEEeCccccccCCccceeEEeec--CCeeceEEEEEEEEEe
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVVK--DKKFQGEVRVGLTFKP 124 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~~--~~~~~G~i~l~l~~~~ 124 (161)
|++.++++++..+.. ...|+.|.. ..+..|+|+|.++|.|
T Consensus 80 G~~~~~l~~l~~~~~-~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 80 GSAFVDLSTLELNKP-TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEHHHcCCCCC-eEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999999987544 357888872 2367899999999976
No 5
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.91 E-value=7.1e-23 Score=133.81 Aligned_cols=121 Identities=28% Similarity=0.470 Sum_probs=102.3
Q ss_pred CeEEEEEEEeecCCCCCCC-CCCCCcEEEEEEcC--eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC
Q 046962 3 KGTLEVLLVCAKGLQDTDF-LSNMDPYVVLSCRT--QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ 79 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~ 79 (161)
.|.|.|+|++|++|+..+. .+.+||||.+.+.. ...+|+.+. ++.+|.|+|.|.|.+......|.|+|||.+..++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCC
Confidence 4889999999999996553 45789999999987 556666665 8999999999999988656799999999998889
Q ss_pred CceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEe
Q 046962 80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKP 124 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~ 124 (161)
+++||.+.+++.++.........++.+...++..|+|+++++|.|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 999999999999999865543345556677788999999999986
No 6
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=1e-22 Score=133.77 Aligned_cols=118 Identities=25% Similarity=0.375 Sum_probs=100.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCCC-C
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTVS-Q 79 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~-~ 79 (161)
+|.|+|++|++|+..+..+.+||||.+.+.....+|+++. ++.||.|||.|.|.+... ...|.|+||+.+.++ .
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 5899999999999998888999999999998888888776 899999999999998754 247999999998876 8
Q ss_pred CceeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEEE
Q 046962 80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFK 123 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~ 123 (161)
+++||++.++++++...+.....||.|.. .....|+|+|++.+.
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999999854445578999973 235789999999874
No 7
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.90 E-value=5.7e-22 Score=131.44 Aligned_cols=120 Identities=26% Similarity=0.421 Sum_probs=100.3
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCC
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQD 80 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d 80 (161)
..|.|.|+|++|++|+..+..+.+||||.+.++....+|+++. ++.||.|+++|.|.+... ...|.|+|||++..++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 3589999999999999999889999999999998888888877 899999999999998764 35899999999998899
Q ss_pred ceeEEEEEeCccccccC--CccceeEEeecCCeeceEEEEEEEE
Q 046962 81 DFVGEAIIPLHSVFEAG--NVPQQAYNVVKDKKFQGEVRVGLTF 122 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~~--~~~~~~~~l~~~~~~~G~i~l~l~~ 122 (161)
++||++.+++.++.... .....+..+.......|+|+|++.|
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 99999999999998621 1122223333467788999999987
No 8
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.90 E-value=8.9e-22 Score=130.07 Aligned_cols=120 Identities=23% Similarity=0.429 Sum_probs=101.2
Q ss_pred CCCeEEEEEEEeecCCCCCCCC----------CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEE
Q 046962 1 MPKGTLEVLLVCAKGLQDTDFL----------SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLK 70 (161)
Q Consensus 1 ~~~g~l~v~i~~a~~L~~~~~~----------~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~ 70 (161)
|.+|.|.|+|++|++|+..+.. +.+||||.+.++++...++.+.+++.+|.|||+|.|.+.. ...|.|.
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~ 79 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELT 79 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEE
Confidence 7889999999999999988752 5789999999987765444444589999999999999974 4789999
Q ss_pred EEecCCCCCCceeEEEEEeCcccccc-CCccceeEEeecCCeeceEEEEEEEEEeC
Q 046962 71 IMDSDTVSQDDFVGEAIIPLHSVFEA-GNVPQQAYNVVKDKKFQGEVRVGLTFKPE 125 (161)
Q Consensus 71 v~~~~~~~~d~~iG~~~~~l~~l~~~-~~~~~~~~~l~~~~~~~G~i~l~l~~~~~ 125 (161)
||+++..+++++||++.++|+++... ......|+.| .+.|+|++.+.|...
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L----~~~G~l~l~~~~~~~ 131 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL----EPQGKLHVKIELKGS 131 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc----cCCcEEEEEEEEecC
Confidence 99999888899999999999998873 3445789999 467999999998753
No 9
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.90 E-value=6e-22 Score=128.60 Aligned_cols=116 Identities=24% Similarity=0.462 Sum_probs=101.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i 83 (161)
|.|.|+|++|++|+..+..+.+||||.+.+.....+|+.+. ++.||.|+++|.|.+......|.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence 68999999999999998888999999999988777777776 89999999999999876567999999999988899999
Q ss_pred EEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEEE
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTFK 123 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~ 123 (161)
|++.+++.++..+. ..||.|.. ..+..|+|++++.+.
T Consensus 80 G~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 80 GKVAIPLLSIKNGE---RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred eEEEEEHHHCCCCC---ceEEECcccCCCCceeeEEEEEEEeC
Confidence 99999999987542 47999872 345799999999873
No 10
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.90 E-value=6.1e-22 Score=129.88 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=99.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcC--eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT--QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i 83 (161)
|.|+|++|++|+. ..+.+||||.+.+.. ...+|++.. ++.||.|+|.|.|.+......|.|+|||++..+++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence 5799999999987 568999999999974 345666665 88999999999999976667899999999998899999
Q ss_pred EEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEEeCCC
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFKPEGG 127 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~~~~~ 127 (161)
|++.+++.++...... ..|+.|.. .....|+|.+++.|.+.++
T Consensus 78 G~~~i~l~~l~~~~~~-~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 78 GLAIVPFDELRKNPSG-RQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEEEeHHHhccCCce-eEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 9999999999876443 57898873 2457899999999987663
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.89 E-value=6.9e-22 Score=128.65 Aligned_cols=115 Identities=22% Similarity=0.312 Sum_probs=96.5
Q ss_pred EEEEEEeecCCCCCC-CCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962 6 LEVLLVCAKGLQDTD-FLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 6 l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i 83 (161)
|.|+|++|++|+..+ ..+.+||||.+.+.... .+|++.+ +++||.|+|+|.|.+......|.|.||+++..+++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence 789999999999874 45689999999997654 4566655 89999999999999987667999999999999899999
Q ss_pred EEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEE
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTF 122 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~ 122 (161)
|.+.++++++.... ....||.|.. ..+..|+|+|+++|
T Consensus 81 G~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 81 GKVAIKKEDLHKYY-GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEHHHccCCC-CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999998653 3468999972 34468999999875
No 12
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=8.3e-22 Score=130.35 Aligned_cols=118 Identities=22% Similarity=0.484 Sum_probs=99.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-------eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-------EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV 77 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-------~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~ 77 (161)
.|+|+|++|++|+..+..+.+||||.+.+... ..+|.++. ++.||.|+++|.|.+......|.|+|||++.+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNPREHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcCCCCEEEEEEEECCCC
Confidence 38999999999999998889999999998754 34566665 89999999999999977667899999999999
Q ss_pred CCCceeEEEEEeCccccccCC-----ccceeEEeec---CCeeceEEEEEEEEE
Q 046962 78 SQDDFVGEAIIPLHSVFEAGN-----VPQQAYNVVK---DKKFQGEVRVGLTFK 123 (161)
Q Consensus 78 ~~d~~iG~~~~~l~~l~~~~~-----~~~~~~~l~~---~~~~~G~i~l~l~~~ 123 (161)
+++++||++.+++.++..... ....||.|.. .++..|+|+|++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 899999999999999887432 3468999972 356789999999883
No 13
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=9.5e-22 Score=132.28 Aligned_cols=121 Identities=23% Similarity=0.377 Sum_probs=102.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCceeE
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVG 84 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG 84 (161)
|.|+|++|++|+..+..+.+||||.+.++++..+|++..+++.||.|||.|.|.+... ...|.|+||+++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 7899999999999999899999999999998888888874579999999999998654 358999999999887899999
Q ss_pred EEEEeCcccccc---CCccceeEEeecC---------CeeceEEEEEEEEEeCC
Q 046962 85 EAIIPLHSVFEA---GNVPQQAYNVVKD---------KKFQGEVRVGLTFKPEG 126 (161)
Q Consensus 85 ~~~~~l~~l~~~---~~~~~~~~~l~~~---------~~~~G~i~l~l~~~~~~ 126 (161)
++.++|+++..+ ......||.|... .+..|+|+|.+.|.+..
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 999999998753 2335689999732 24569999999998443
No 14
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.89 E-value=8.7e-22 Score=128.46 Aligned_cols=111 Identities=23% Similarity=0.413 Sum_probs=95.4
Q ss_pred EEEEEEeecC---CCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC-----
Q 046962 6 LEVLLVCAKG---LQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV----- 77 (161)
Q Consensus 6 l~v~i~~a~~---L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~----- 77 (161)
|+|+|++|++ |+..+..+.+||||.+.++.+..+|+++. ++.||+|||+|.|.+......|.|+|||.+..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 7899999999 88888889999999999999988888887 89999999999999987667899999999876
Q ss_pred -CCCceeEEEEEeCccccccCCccceeEEeec----CCeeceEEEE
Q 046962 78 -SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRV 118 (161)
Q Consensus 78 -~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l 118 (161)
.+|++||++.+++..+..+.. ...||.|.. ..+..|+|+.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRV-YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCE-EeeEEEeEeCCCCCccCCcEEEe
Confidence 389999999999999987643 468999872 2456677764
No 15
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.89 E-value=1.3e-21 Score=128.57 Aligned_cols=118 Identities=28% Similarity=0.431 Sum_probs=100.4
Q ss_pred eEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC-CCCeEEEEEEecCCCCCC
Q 046962 4 GTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE-GTTALKLKIMDSDTVSQD 80 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~l~i~v~~~~~~~~d 80 (161)
|.|.|+|++|++|+..+. .+.+||||.+.++....+|+.++ ++.+|.|++.|.|.+.. ....|.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 689999999999999887 78999999999988777777776 89999999999999986 357999999999988899
Q ss_pred ceeEEEEEeCcccccc--CCccceeEEeecC-----CeeceEEEEEEEE
Q 046962 81 DFVGEAIIPLHSVFEA--GNVPQQAYNVVKD-----KKFQGEVRVGLTF 122 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~--~~~~~~~~~l~~~-----~~~~G~i~l~l~~ 122 (161)
++||++.+++.++... ......||.|... ....|+|+|++++
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999998742 2335689998732 3368999999864
No 16
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.88 E-value=2.5e-21 Score=126.09 Aligned_cols=115 Identities=23% Similarity=0.435 Sum_probs=97.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeE
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVG 84 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG 84 (161)
|.|+|++|++|+..+..+.+||||.+.+.+... +|+.+. ++.||.|+|.|.|.+......|.|+||+++..+++++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW-KTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc-CCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999889999999999976554 566665 899999999999998776679999999999998999999
Q ss_pred EEEEeCccccccCCccceeEEeec---CCeeceEEEEEEE
Q 046962 85 EAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLT 121 (161)
Q Consensus 85 ~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~ 121 (161)
++.++++.+.........|+.|.. .....|+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999888764444568999962 3456899998875
No 17
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.88 E-value=4e-21 Score=125.96 Aligned_cols=117 Identities=19% Similarity=0.327 Sum_probs=96.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCCCCCCce
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~~~~d~~ 82 (161)
..|+|+|++|++|+.. +.+||||.+.+++....++.+. ++.||.|||+|.|.+.... ..+.|.|||++..+++++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 5799999999999875 3689999999987654444445 6899999999999865543 478999999999999999
Q ss_pred eEEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEEeC
Q 046962 83 VGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFKPE 125 (161)
Q Consensus 83 iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~~~ 125 (161)
||++.++|+++..+.. ...||.|.. .....|+|+|+++|.+.
T Consensus 80 iG~v~i~l~~l~~~~~-~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 80 IAEVTVQLSKLQNGQE-TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EEEEEEEHhHccCCCc-ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999999887544 468999973 24567999999999864
No 18
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.88 E-value=4.5e-21 Score=127.17 Aligned_cols=120 Identities=21% Similarity=0.369 Sum_probs=100.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC----------CCCeEEEEEEec
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE----------GTTALKLKIMDS 74 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~----------~~~~l~i~v~~~ 74 (161)
.|+|+|++|++|+..+..+.+||||++.+.....+|++++ ++.||.|++.|.|.+.. ....|.++|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5899999999999999989999999999988877877776 89999999999997432 124689999999
Q ss_pred CCCCCCceeEEEEE-eCcccccc--CCccceeEEeecCCeeceEEEEEEEEEeC
Q 046962 75 DTVSQDDFVGEAII-PLHSVFEA--GNVPQQAYNVVKDKKFQGEVRVGLTFKPE 125 (161)
Q Consensus 75 ~~~~~d~~iG~~~~-~l~~l~~~--~~~~~~~~~l~~~~~~~G~i~l~l~~~~~ 125 (161)
+..++|++||++.+ ++..+... ......|+.|...+...|+|++++.+.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 99989999999986 55545432 23456899998777789999999999875
No 19
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.88 E-value=3.1e-21 Score=124.74 Aligned_cols=114 Identities=25% Similarity=0.411 Sum_probs=98.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i 83 (161)
.++|+|++|++|+..+..+.+||||.+.+.+...+|++.. ++.||.|+|+|.|.+... ...|.|+|||++..+++++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence 3789999999999999888999999999988777777766 899999999999998776 46899999999998899999
Q ss_pred EEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK 123 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~ 123 (161)
|++.++++++..+.. ...|+.|... .|+|++.+.|.
T Consensus 80 G~~~~~l~~l~~~~~-~~~w~~L~~~---~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQT-HSLELELEDG---EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCc-eEEEEEccCC---CcEEEEEEEec
Confidence 999999999887543 5689988422 59999998874
No 20
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.88 E-value=7.8e-21 Score=124.60 Aligned_cols=119 Identities=21% Similarity=0.402 Sum_probs=101.8
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD 81 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~ 81 (161)
|...|+|+|++|++|+..+..+.+||||.+.++....+|++.. ++.+|.|+|.|.|.+......|.|+|||++.. .|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQK-DTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccC-CCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCC
Confidence 5688999999999999998889999999999998888888776 89999999999998877767999999999877 589
Q ss_pred eeEEEEEeCccccccCCccceeEEee-----cCCeeceEEEEEEEEEeC
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYNVV-----KDKKFQGEVRVGLTFKPE 125 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~l~-----~~~~~~G~i~l~l~~~~~ 125 (161)
+||.+.+++.++.. ....++.|. ..+...|+|.|++.+.+.
T Consensus 79 ~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 79 FLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred ceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999999987643 234677774 456788999999987753
No 21
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=3.1e-21 Score=125.60 Aligned_cols=111 Identities=25% Similarity=0.425 Sum_probs=94.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCceeE
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVG 84 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG 84 (161)
|.|+|++|++|+.. .+||||.+.+.+...+|++++ ++.||.|||+|.|.+... ...|.|+|||++.. .+++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 78999999999887 689999999988777777776 899999999999998763 56899999999977 789999
Q ss_pred EEEEeCccccccC----CccceeEEeec--CCeeceEEEEEEEE
Q 046962 85 EAIIPLHSVFEAG----NVPQQAYNVVK--DKKFQGEVRVGLTF 122 (161)
Q Consensus 85 ~~~~~l~~l~~~~----~~~~~~~~l~~--~~~~~G~i~l~l~~ 122 (161)
++.++++++.... .....||.|.. ..+..|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999987632 22458999973 34688999999987
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.88 E-value=5e-21 Score=125.03 Aligned_cols=114 Identities=25% Similarity=0.464 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i 83 (161)
+|+|+|++|++|+..+..+.+||||.+.++....+|+++. ++.||.|+|+|.|.+... ...|.|+|||++..+++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 4899999999999998888899999999988777777776 899999999999998775 35899999999998899999
Q ss_pred EEEEEeCccccccCCccceeEEeec-------CCeeceEEEEEE
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVVK-------DKKFQGEVRVGL 120 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~~-------~~~~~G~i~l~l 120 (161)
|++.++++++..... ...||.|.. ..+..|.|++.|
T Consensus 80 G~~~~~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQ-EEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCC-CCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999976533 468999872 456779998876
No 23
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=130.08 Aligned_cols=97 Identities=42% Similarity=0.684 Sum_probs=91.0
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCC
Q 046962 1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD 80 (161)
Q Consensus 1 ~~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d 80 (161)
|+.|.|.|+|++|.+|...|..+.+||||.+.+++++.+|+.+. +++||+|||.|.|.+..+...|.++|||+|.+..|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~-~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVY-KNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeec-CCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence 67899999999999999999889999999999999999999777 99999999999999999988999999999999999
Q ss_pred ceeEEEEEeCccccccCC
Q 046962 81 DFVGEAIIPLHSVFEAGN 98 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~~~ 98 (161)
++||.+.++|..+.....
T Consensus 82 D~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQK 99 (168)
T ss_pred cccceeeeccHHHHHHhh
Confidence 999999999998877543
No 24
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.87 E-value=1.9e-20 Score=127.04 Aligned_cols=118 Identities=25% Similarity=0.447 Sum_probs=97.4
Q ss_pred CeEEEEEEEeecCCCCCCC------------------------------CCCCCcEEEEEEcCeee-EEEEeeCCCCCCe
Q 046962 3 KGTLEVLLVCAKGLQDTDF------------------------------LSNMDPYVVLSCRTQEK-RSSVASGQGTTPN 51 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~------------------------------~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~ 51 (161)
-|+|.|+|++|++|+.+|. .+.+||||.+.++.... +|+++. ++.||.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~-~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIE-NSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeC-CCCCCc
Confidence 4899999999999999872 35689999999987664 566665 889999
Q ss_pred eccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEE
Q 046962 52 WNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFK 123 (161)
Q Consensus 52 w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~ 123 (161)
|||+|.|.+......|.|+|||++..+ +++||++.++++++..+. ....|+.|.. ..+..|+|++++.|.
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~-~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGE-PVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCC-CcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999998777678999999999874 689999999999998753 4568999873 223458999999984
No 25
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.86 E-value=1.5e-20 Score=122.05 Aligned_cols=113 Identities=27% Similarity=0.433 Sum_probs=94.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCc
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDD 81 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~ 81 (161)
|.|+|++|++|+..+..+.+||||.+.+.. ...+|+++. ++.||.|+|+|.|.+... ...|.|+|||++.. +++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 789999999999998888999999999863 345666666 899999999999998765 34799999999988 899
Q ss_pred eeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK 123 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~ 123 (161)
+||++.+++.++..+. ....|+.|. .+..|+|++++.+.
T Consensus 80 ~iG~~~~~l~~l~~g~-~~~~~~~L~--~~~~g~l~~~~~~~ 118 (119)
T cd04036 80 HLGTVLFDVSKLKLGE-KVRVTFSLN--PQGKEELEVEFLLE 118 (119)
T ss_pred ccEEEEEEHHHCCCCC-cEEEEEECC--CCCCceEEEEEEee
Confidence 9999999999998753 346889884 34578888888763
No 26
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.86 E-value=3.1e-20 Score=121.28 Aligned_cols=114 Identities=23% Similarity=0.505 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEc-CeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC--Cc
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-TQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ--DD 81 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~--d~ 81 (161)
.|+|+|++|++|+..+..+.+||||.+.+. ....+|++.. ++.||.|+|+|.|.+.. ...|.|+|||++.++. ++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCc
Confidence 378999999999999988999999999996 4555666665 89999999999999976 5799999999998765 57
Q ss_pred eeEEEEEeCccccccCCccceeEEee-----cCCeeceEEEEEE
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYNVV-----KDKKFQGEVRVGL 120 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~l~-----~~~~~~G~i~l~l 120 (161)
+||++.+++.++.........|+.|. ..+...|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999999987554445799886 1345678888876
No 27
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.86 E-value=2.3e-20 Score=121.39 Aligned_cols=114 Identities=27% Similarity=0.445 Sum_probs=96.5
Q ss_pred eEEEEEEEeecCCCCCCC------CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCC
Q 046962 4 GTLEVLLVCAKGLQDTDF------LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDT 76 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~------~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~ 76 (161)
|.|.|+|++|++|+..+. .+.+||||.+.++....+|+++. ++.+|.|++.|.|.+... ...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 679999999999998874 25799999999988777777776 899999999999998753 4699999999998
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEE
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTF 122 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~ 122 (161)
. ++++||++.+++.++...+. ...||.|. ....|+|++.++|
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~-~~~w~~L~--~~~~G~~~~~~~~ 121 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGF-IDEWLPLE--DVKSGRLHLKLEW 121 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCc-cceEEECc--CCCCceEEEEEeC
Confidence 8 89999999999999987543 46899994 2357999998864
No 28
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.86 E-value=8e-21 Score=124.37 Aligned_cols=114 Identities=25% Similarity=0.486 Sum_probs=97.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-eeeEEEEeeCCCCCCeeccEEEEEEeCC-----CCeEEEEEEecCCCC
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-QEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLKIMDSDTVS 78 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~l~i~v~~~~~~~ 78 (161)
+|.|+|++|++|+..+..+.+||||.+.+.. ...+|.+...++.+|.|+|.|.|.+... ...|.|+||+++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999998888999999999987 5566666654689999999999998776 468999999999888
Q ss_pred CCceeEEEEEeCccccccCCc----cceeEEee-cCCeeceEEEE
Q 046962 79 QDDFVGEAIIPLHSVFEAGNV----PQQAYNVV-KDKKFQGEVRV 118 (161)
Q Consensus 79 ~d~~iG~~~~~l~~l~~~~~~----~~~~~~l~-~~~~~~G~i~l 118 (161)
.+++||++.+++.++...... ...||.|. .+++..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 899999999999999886543 36899998 57788888864
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.86 E-value=8e-21 Score=121.69 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=79.8
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT 76 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~ 76 (161)
.++|+|+|++|++|+ . .+.+||||++++.. ..++++.++++++||+|||+|.|.+... ...|.|+|||++.
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence 579999999999998 2 36699999999963 1334455555999999999999998765 3479999999999
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEE
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYN 105 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~ 105 (161)
++++++||++.++++++....+. ..|..
T Consensus 90 fs~~d~IG~v~l~l~~~~~~~~~-~~W~~ 117 (118)
T cd08677 90 FSRHSTLGELRLKLADVSMMLGA-AQWVD 117 (118)
T ss_pred CCCCceEEEEEEccccccCCccc-cchhc
Confidence 99999999999999987554332 35654
No 30
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.86 E-value=4.4e-20 Score=121.17 Aligned_cols=113 Identities=29% Similarity=0.574 Sum_probs=94.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC------
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV------ 77 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~------ 77 (161)
.+|+|+|++|++|+..+..+.+||||.+.++....+|+.+. ++.+|.|+|.|.|.+......|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccc
Confidence 37899999999999999888999999999987777777776 89999999999999876657899999998852
Q ss_pred -----CCCceeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEE
Q 046962 78 -----SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGL 120 (161)
Q Consensus 78 -----~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l 120 (161)
+.+++||++.+++.++... ...||.|.. .....|+|++++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~---~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGE---MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCC---CCeEEECccCCCCCcEeEEEEEEC
Confidence 4689999999999987533 358999973 345789998864
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.85 E-value=1.6e-20 Score=122.40 Aligned_cols=101 Identities=26% Similarity=0.417 Sum_probs=84.7
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC----CCCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE----GTTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~l~i~v~~ 73 (161)
.++|.|.|++|++|+..+ .+.+||||++.+.. ...+|++.+ ++.||.|||+|.|++.. ....|.|+|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 478999999999999999 88999999999963 234556655 89999999999999722 24589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
++.++++++||++.++|.++.... ....||.|
T Consensus 90 ~d~~~~~~~lG~~~i~l~~l~~~~-~~~~W~~L 121 (122)
T cd08381 90 HDSLVENEFLGGVCIPLKKLDLSQ-ETEKWYPL 121 (122)
T ss_pred CCCCcCCcEEEEEEEeccccccCC-CccceEEC
Confidence 999989999999999999998653 34689976
No 32
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.85 E-value=7.8e-20 Score=118.80 Aligned_cols=105 Identities=20% Similarity=0.376 Sum_probs=90.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~ 82 (161)
|.|.|+|++|++|+..+..+.+||||.+.+.... .+|... +++.+|.|++.|.|.+......|.|+||+++..+++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTI-SNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEE-CCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence 6899999999999999988999999999997654 445554 48999999999999988776899999999999989999
Q ss_pred eEEEEEeCccccccCCccceeEEeecCCe
Q 046962 83 VGEAIIPLHSVFEAGNVPQQAYNVVKDKK 111 (161)
Q Consensus 83 iG~~~~~l~~l~~~~~~~~~~~~l~~~~~ 111 (161)
||++.+++.++... ....||.|....+
T Consensus 80 IG~~~~~l~~l~~~--~~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKK--NEDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCC--CCCceEEecCCCc
Confidence 99999999999886 3368998875443
No 33
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=4.9e-20 Score=119.24 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=82.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----Ce-eeEEEEeeCCCCCCeeccEEEEEEeCCC----CeEEEEEEec
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQ-EKRSSVASGQGTTPNWNENFVFTISEGT----TALKLKIMDS 74 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~----~~l~i~v~~~ 74 (161)
+|+|+|++|++|+..+. |.+||||+|++. .+ ++.++.+.++++||+|||+|.|.+.... ..|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 58999999999998874 889999999983 22 2233444459999999999999997542 3689999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
+..+++++||++.+++.++..++. ...|+.|.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~ 111 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGS-CACWLPLG 111 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCc-EEEEEECc
Confidence 988889999999999999998754 46899885
No 34
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.84 E-value=3.3e-20 Score=121.44 Aligned_cols=102 Identities=24% Similarity=0.359 Sum_probs=85.6
Q ss_pred CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
.+.|.|+|++|++|+..+.. +.+||||++++.. ...+|++++ ++.||.|||+|.|.+... ...|.|+|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 46899999999999999875 7899999999852 224555555 999999999999998643 3589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
++.++++++||++.++|.++... .....||.|
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~-~~~~~W~~L 124 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWS-NTQPTWYPL 124 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccC-CCCcceEEC
Confidence 99999999999999999999765 345689987
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=8.1e-20 Score=121.87 Aligned_cols=104 Identities=24% Similarity=0.330 Sum_probs=85.8
Q ss_pred CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEE-ecC
Q 046962 3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIM-DSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~-~~~ 75 (161)
.+.|.|+|++|++|+..+ ..+.+||||++++... +.+|++++ +++||+|||+|.|.+......|.|+|| +++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC-CCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 478999999999998864 5578999999999532 33555554 999999999999999866679999999 577
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK 108 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~ 108 (161)
.+.++++||++.++|.++..... ...||.|..
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~-~~~Wy~L~~ 138 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNL-VIGWYKLFP 138 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCC-ceeEEecCC
Confidence 77889999999999999865433 468999963
No 36
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.84 E-value=4.7e-20 Score=121.00 Aligned_cols=103 Identities=20% Similarity=0.350 Sum_probs=86.4
Q ss_pred CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
.++|.|+|++|++|+..+.. +.+||||++++... +.+|++.+ ++.||+|||+|.|.+... ...|.+.||+
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 57899999999999999874 88999999998522 33455555 899999999999998664 4589999999
Q ss_pred cCCCCCCceeEEEEEeCcccccc--CCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEA--GNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~--~~~~~~~~~l 106 (161)
.+.++++++||++.++|+++... ......||.|
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99988999999999999998664 3456789987
No 37
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=2.2e-19 Score=117.88 Aligned_cols=117 Identities=18% Similarity=0.387 Sum_probs=98.4
Q ss_pred EEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCCCCceeEEE
Q 046962 10 LVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVSQDDFVGEA 86 (161)
Q Consensus 10 i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~~d~~iG~~ 86 (161)
|++|++|+. ..+.+||||.+.+.....+|++.+ ++.+|.|+|+|.|.+... ...|.|+||+++..+++++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence 688999988 568899999999988877777776 889999999999998653 46899999999988899999999
Q ss_pred EEeCccccccCCccceeEEee-c-CCeeceEEEEEEEEEeCCCCCC
Q 046962 87 IIPLHSVFEAGNVPQQAYNVV-K-DKKFQGEVRVGLTFKPEGGHGH 130 (161)
Q Consensus 87 ~~~l~~l~~~~~~~~~~~~l~-~-~~~~~G~i~l~l~~~~~~~~~~ 130 (161)
.+++.++..+.. ...|+.|. . .....|+|++++.|.|......
T Consensus 79 ~~~l~~l~~~~~-~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 79 TVSLQDLVSEGL-LEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred EEEhhHcccCCc-eEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 999999987543 45788886 2 2334699999999999887654
No 38
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.84 E-value=4.6e-20 Score=123.63 Aligned_cols=100 Identities=23% Similarity=0.347 Sum_probs=82.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC----------------C
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE----------------G 63 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----------------~ 63 (161)
+|.|+|++|++|+. ..+.+||||.+.+.. ...+|++.. ++.||+|||+|.|.+.. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCccccc
Confidence 58999999999988 458899999999975 334566665 89999999999999851 1
Q ss_pred CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 64 ~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
...|.|.||+.+..++++|||++.+++.++.........||.|.
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~ 121 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQ 121 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecC
Confidence 24789999999988899999999999999987623346899996
No 39
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.84 E-value=3.6e-20 Score=120.74 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=86.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
.++|.|+|++|+||+..+..+.+||||++++.. ...+|++.+ ++.||+|||+|.|++... ...|.|+||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 478999999999999988778899999999852 234455554 899999999999998764 4589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
.+..+++++||.+.++|+++.........||.|
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999889999999999999996655555789875
No 40
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.84 E-value=1.2e-19 Score=118.59 Aligned_cols=103 Identities=56% Similarity=0.955 Sum_probs=90.5
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCCCC
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTVSQ 79 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~ 79 (161)
|+|.|+|++|++|+..+..+.+||||.+.+.....+|++...++.+|.|+++|.|.+... ...|.|+|||.+..++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999888889999999999888777877764589999999999999876 4689999999998889
Q ss_pred CceeEEEEEeCccccccCCccceeEEee
Q 046962 80 DDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
+++||++.+++.++...+. ...|+.|.
T Consensus 81 d~~iG~~~i~l~~l~~~~~-~~~~~~l~ 107 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGV-EPGTAELV 107 (124)
T ss_pred CCeEEEEEEEhHHhhhCCC-CcCceEee
Confidence 9999999999999987644 46888885
No 41
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.84 E-value=3.3e-19 Score=116.86 Aligned_cols=115 Identities=19% Similarity=0.308 Sum_probs=95.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe---eeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCC
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ---EKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQD 80 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d 80 (161)
.|+|+|++|++|+..+..+.+||||.+.+... ..+|..+. ++.+|.|+|+|.|.+... ...|.|+||+++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 68999999999999998889999999987643 34556655 889999999999999875 46899999999988899
Q ss_pred ceeEEEEEeCcccccc--CCccceeEEeecCCeeceEEEEEEEEEe
Q 046962 81 DFVGEAIIPLHSVFEA--GNVPQQAYNVVKDKKFQGEVRVGLTFKP 124 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~--~~~~~~~~~l~~~~~~~G~i~l~l~~~~ 124 (161)
++||++.++|.++... +.....|+.| ...|+|++.+.+.-
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l----~~~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDL----DTQGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEc----CCCCeEEEEEEEee
Confidence 9999999999886543 3344679988 34799999988763
No 42
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.84 E-value=1.5e-19 Score=116.92 Aligned_cols=99 Identities=22% Similarity=0.380 Sum_probs=84.2
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~ 82 (161)
++.|.|+|++|++|+..+ ..||||.|.+++.+.+|...+ + .||.|||.|.|.+......|.|+|||++.+ .|++
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~-~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVR-G-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECC-C-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCc
Confidence 468999999999997765 458999999998777777775 4 599999999999987766799999999866 8999
Q ss_pred eEEEEEeCccccccC-CccceeEEee
Q 046962 83 VGEAIIPLHSVFEAG-NVPQQAYNVV 107 (161)
Q Consensus 83 iG~~~~~l~~l~~~~-~~~~~~~~l~ 107 (161)
||++.++|+++..+. .....||.|.
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999987643 3347899997
No 43
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.83 E-value=1.1e-19 Score=118.83 Aligned_cols=103 Identities=27% Similarity=0.437 Sum_probs=87.2
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT 76 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~ 76 (161)
.+.|.|+|++|++|+..+..+.+||||.+.+. ....+|++.+ ++.+|.|+|+|.|.+... ...|.|+||+++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 57899999999999999988899999999984 2234555555 899999999999997654 3589999999999
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
++++++||++.++++++.... ....||.|+
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCCC-CcceEEECc
Confidence 989999999999999998754 446899874
No 44
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.83 E-value=1.3e-19 Score=115.53 Aligned_cols=94 Identities=21% Similarity=0.398 Sum_probs=81.3
Q ss_pred eEEEEEEEeecCCCCCCCC----CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC--CeEEEEEEecCCC
Q 046962 4 GTLEVLLVCAKGLQDTDFL----SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT--TALKLKIMDSDTV 77 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~----~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~--~~l~i~v~~~~~~ 77 (161)
|.|.|+|++|++|+..+.. +.+||||.+.++....+|++++ ++.||+|+|.|.|.+.... ..|.|+|||++.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 6899999999999987643 3489999999988777777776 8999999999999986542 4789999999999
Q ss_pred CCCceeEEEEEeCccccccCC
Q 046962 78 SQDDFVGEAIIPLHSVFEAGN 98 (161)
Q Consensus 78 ~~d~~iG~~~~~l~~l~~~~~ 98 (161)
++|++||++.++|.+|..+..
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCcceEEEEEEHHHHHhhCC
Confidence 999999999999999987543
No 45
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.83 E-value=2e-19 Score=117.64 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=85.6
Q ss_pred CCeEEEEEEEeecCCCCCCC-CCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEE
Q 046962 2 PKGTLEVLLVCAKGLQDTDF-LSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIM 72 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~ 72 (161)
..++|.|+|++|++|+..+. .+.+||||++++.. ...+|++.+ ++.||.|||+|.|.+... ...|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 45789999999999998875 47899999999852 123455554 899999999999998653 357999999
Q ss_pred ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
|++..+++++||++.+++.++..... ...||.|.
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~-~~~w~~l~ 125 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQ-HEECLPLH 125 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCC-cccEEECc
Confidence 99999999999999999999987643 46899873
No 46
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.83 E-value=1.4e-19 Score=116.10 Aligned_cols=99 Identities=25% Similarity=0.395 Sum_probs=83.6
Q ss_pred eEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecC
Q 046962 4 GTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSD 75 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~ 75 (161)
|+|.|+|++|++|+..+.. +.+||||++.+.. ...+|++++ +++||.|+|+|.|.+... ...|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 7899999999999999987 8999999999853 234566665 899999999999987654 358999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
..++|++||++.+++.+|... ..|+.+.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~----~~~~~~~ 107 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIED----RNWMGRR 107 (111)
T ss_pred CCCCCCcceEEEEEHHHHhcC----CCCCccc
Confidence 998999999999999999853 3577664
No 47
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.82 E-value=2.1e-19 Score=114.17 Aligned_cols=99 Identities=24% Similarity=0.408 Sum_probs=85.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i 83 (161)
.|.|+|++|++|+..+..+.+||||.+.+++...+|++.. ++.+|.|+|+|.|.+... ...|.|+||+++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCcccc-CCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCcc
Confidence 3789999999999998888999999999998777777766 899999999999999875 4589999999885 7899
Q ss_pred EEEEEeCccccccC-CccceeEEee
Q 046962 84 GEAIIPLHSVFEAG-NVPQQAYNVV 107 (161)
Q Consensus 84 G~~~~~l~~l~~~~-~~~~~~~~l~ 107 (161)
|++.++|.++.... .....||.|.
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecC
Confidence 99999999998753 3356899984
No 48
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.82 E-value=2.1e-19 Score=115.11 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=87.0
Q ss_pred EEEEEEeecCCCCCCC-CCCCCcEEEEEEcCeeeEEEEeeCCCCCCee-ccEEEEEEeCC---CCeEEEEEEecCCCCCC
Q 046962 6 LEVLLVCAKGLQDTDF-LSNMDPYVVLSCRTQEKRSSVASGQGTTPNW-NENFVFTISEG---TTALKLKIMDSDTVSQD 80 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~-~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w-~e~~~~~~~~~---~~~l~i~v~~~~~~~~d 80 (161)
|.|+|++|++|+..+. .+.+||||.+.++....+|++++ +++||.| +|+|.|.+... ...|.|+|||++..+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5799999999998874 57899999999998777777776 8999999 99999998764 35899999999998899
Q ss_pred ceeEEEEEeCcccccc--CCccceeEEee
Q 046962 81 DFVGEAIIPLHSVFEA--GNVPQQAYNVV 107 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~--~~~~~~~~~l~ 107 (161)
++||++.+++.++... ......||.|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 9999999999999883 23356899884
No 49
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.82 E-value=4.7e-19 Score=115.80 Aligned_cols=102 Identities=25% Similarity=0.398 Sum_probs=86.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT 76 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~ 76 (161)
.++|.|+|++|++|+..+..+.+||||++.+.. ...+|++.+ ++.||.|+|+|.|.+... ...|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 578999999999999998888999999999853 233555555 899999999999998653 3589999999999
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
++++++||++.++++++..+ .....|+.|
T Consensus 94 ~~~~~~lG~~~i~l~~~~~~-~~~~~W~~l 122 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDLG-HVTEEWRDL 122 (124)
T ss_pred CCCCceeEEEEEecCcccCC-CCcceEEEc
Confidence 88999999999999998764 445689987
No 50
>PLN03008 Phospholipase D delta
Probab=99.82 E-value=8.3e-19 Score=141.61 Aligned_cols=149 Identities=23% Similarity=0.382 Sum_probs=121.7
Q ss_pred eEEEEEEEeecCCCCCCC------------------------------------------CCCCCcEEEEEEcCeee-EE
Q 046962 4 GTLEVLLVCAKGLQDTDF------------------------------------------LSNMDPYVVLSCRTQEK-RS 40 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~------------------------------------------~~~~dp~v~i~~~~~~~-~t 40 (161)
|+|.++|.+|++|+.++. .+.+||||.|.++..+. +|
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 789999999999885221 23579999999987655 55
Q ss_pred EEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEeecC----CeeceEE
Q 046962 41 SVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKD----KKFQGEV 116 (161)
Q Consensus 41 ~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~----~~~~G~i 116 (161)
+++. ++.||+|||+|.|.+......|.|+|||++.++ +++||++.+|+.++..+.. ...|+.|... .+..|+|
T Consensus 94 rVi~-n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~-vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 94 RVLK-NSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGER-ISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred EeCC-CCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCc-eEEEEEccccCCCCCCCCcEE
Confidence 5554 899999999999999887789999999999996 5899999999999988644 4689999832 2455899
Q ss_pred EEEEEEEeCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 046962 117 RVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYGGESYGG 155 (161)
Q Consensus 117 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 155 (161)
+|++.|.|-........|-..+....|+...+..+.-|+
T Consensus 171 ~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~ 209 (868)
T PLN03008 171 FIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGS 209 (868)
T ss_pred EEEEEEEEccccccccccccCCcCCCCCCCccccCCCCC
Confidence 999999999999888888666657788888887776654
No 51
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=4.6e-19 Score=119.01 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=87.0
Q ss_pred EEEEEEEeecCCCCCCCCC--------------CCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEE
Q 046962 5 TLEVLLVCAKGLQDTDFLS--------------NMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--TTALK 68 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~--------------~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~ 68 (161)
+|.|+|++|++|+..+..+ .+||||+|.+.....+|++++ ++.||+|||+|.|.+..+ ...|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCCcCCEEE
Confidence 4789999999999988543 689999999998888887777 899999999999997543 46899
Q ss_pred EEEEecCCCCCCceeEEEEEeCccccccCC------ccceeEEee
Q 046962 69 LKIMDSDTVSQDDFVGEAIIPLHSVFEAGN------VPQQAYNVV 107 (161)
Q Consensus 69 i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~------~~~~~~~l~ 107 (161)
|+|||++..++|++||++.+++.++...+. ..+.|+.|.
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999999899999999999999877543 246888885
No 52
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=4.6e-19 Score=115.93 Aligned_cols=101 Identities=24% Similarity=0.414 Sum_probs=83.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeC----CCCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISE----GTTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~l~i~v~~ 73 (161)
.++|.|+|++|++|+..+..+.+||||.+.+.. ...+|++++ ++.||.|+|+|.|.+.. ....|.|+|||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 578999999999999998888999999999864 234556555 89999999999998644 24589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
++..+++++||++.++|.+..... ...||.|
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~~~~~--~~~W~~L 124 (125)
T cd04031 94 YDRDGENDFLGEVVIDLADALLDD--EPHWYPL 124 (125)
T ss_pred CCCCCCCcEeeEEEEecccccccC--CcceEEC
Confidence 999889999999999999843332 3589987
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.81 E-value=3.4e-19 Score=115.56 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=82.3
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~ 75 (161)
.++|.|+|++|++|+..+ .+.+||||++++... ..+|++.. ++.||.|||+|.|.+... ...|.|+||+.+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 478999999999999988 788999999998632 23455554 899999999999998654 246889999998
Q ss_pred CCC-CCceeEEEEEeCccccccCCccceeEEe
Q 046962 76 TVS-QDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 76 ~~~-~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
... ++++||++.+++.++..+ .....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~-~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQ-KEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccC-ccccceEeC
Confidence 765 478999999999999854 434689975
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.81 E-value=9.2e-19 Score=114.84 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=85.7
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.+.|+|+|++|++|+..+..+.+||||++.+.. ...+|++++ ++.||.|+|+|.|.+... ...|.+.||+.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 478999999999999999888999999999853 344566665 899999999999998654 35899999999
Q ss_pred CCC--CCCceeEEEEEeCccccccCCccceeEEe
Q 046962 75 DTV--SQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 75 ~~~--~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
+.+ +++++||++.+++.++..+. ....||.|
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L 126 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLSK-GFTQWYDL 126 (127)
T ss_pred CcccCCCCceEEEEEEecccccccC-CccceEEC
Confidence 875 68999999999999997653 34689987
No 55
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.80 E-value=1.5e-18 Score=115.95 Aligned_cols=93 Identities=38% Similarity=0.615 Sum_probs=84.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCce
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~ 82 (161)
.|.|.|+|++|++|+..+. +.+||||.+.++....+|+++. ++.||.|+|+|.|.+......|.|+|||++.++.|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCE
Confidence 3899999999999998887 7899999999998888888877 8999999999999998877799999999999999999
Q ss_pred eEEEEEeCccccccC
Q 046962 83 VGEAIIPLHSVFEAG 97 (161)
Q Consensus 83 iG~~~~~l~~l~~~~ 97 (161)
||++.+++.++....
T Consensus 79 iG~a~i~l~~l~~~~ 93 (145)
T cd04038 79 MGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEHHHhhhhh
Confidence 999999999887643
No 56
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.80 E-value=6.3e-18 Score=110.62 Aligned_cols=113 Identities=27% Similarity=0.459 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-eeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-EKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i 83 (161)
+|.|+|.+|+ |...+..+.+||||.+.+... ..+|++.. ++.+|.|++.|.|.+.. ...|.|+|||++..+.+++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~-~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeC-CCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 6899999998 545555788999999999876 55566655 89999999999999864 47999999999998899999
Q ss_pred EEEEEeCccccccCCcc----ceeEEeecCC----eeceEEEEEE
Q 046962 84 GEAIIPLHSVFEAGNVP----QQAYNVVKDK----KFQGEVRVGL 120 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~----~~~~~l~~~~----~~~G~i~l~l 120 (161)
|++.++|.++....... ..|+.+.... ...|+|.+++
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999988743322 2367776333 6689998875
No 57
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.80 E-value=2.7e-18 Score=112.31 Aligned_cols=104 Identities=26% Similarity=0.397 Sum_probs=85.7
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS 74 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~ 74 (161)
+.++|.|+|++|++|+..+..+.+||||.+.+. ....+|++.+ ++.+|.|+|+|.|..... ...|.++|||+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 357899999999999999888899999999983 3344566655 899999999999975322 34799999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
+.++++++||++.+++.++... .....|+.|.
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~l~ 124 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDLT-EEQTFWKDLK 124 (125)
T ss_pred CCCcCCcEeeEEEEecccccCC-CCcceEEecC
Confidence 9998999999999999999864 3456899873
No 58
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.79 E-value=8.8e-18 Score=111.19 Aligned_cols=113 Identities=25% Similarity=0.462 Sum_probs=89.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------------eeeEEEEeeCCCCCCee-ccEEEEEEeCCCCeEEEE
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------------QEKRSSVASGQGTTPNW-NENFVFTISEGTTALKLK 70 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------------~~~~t~~~~~~~~~P~w-~e~~~~~~~~~~~~l~i~ 70 (161)
.+.|.+++|++|+ .+.++.+|||+.+.+.. +..+|.++. +++||+| +|+|.|.+... ..|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~-~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT-DVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCCC-CEEEEE
Confidence 4789999999998 67789999999999842 134555555 9999999 99999998654 789999
Q ss_pred EEecCCCCC---CceeEEEEEeCccccccCCc--cceeEEee---cCCeeceEEEEEE
Q 046962 71 IMDSDTVSQ---DDFVGEAIIPLHSVFEAGNV--PQQAYNVV---KDKKFQGEVRVGL 120 (161)
Q Consensus 71 v~~~~~~~~---d~~iG~~~~~l~~l~~~~~~--~~~~~~l~---~~~~~~G~i~l~l 120 (161)
|||++..++ +++||++.+++.++...... ...||.|. ......|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999765433 78999999999999876443 45688876 3455678888765
No 59
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.79 E-value=3.1e-18 Score=111.69 Aligned_cols=102 Identities=28% Similarity=0.435 Sum_probs=84.4
Q ss_pred CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
.+.|.|+|++|++|+..+ ..+.+||||++.+.. ...+|.+. +++.+|.|+|+|.|.+... ...|.|+||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVK-KNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeecccc-CCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 578999999999999988 678899999998842 22345554 4899999999999997653 3589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
++..+++++||++.++|+++..+. ....||.|
T Consensus 92 ~~~~~~~~~iG~~~i~l~~l~~~~-~~~~w~~l 123 (123)
T cd08521 92 HDRFGRNTFLGEVEIPLDSWDLDS-QQSEWYPL 123 (123)
T ss_pred CCCCcCCceeeEEEEecccccccC-CCccEEEC
Confidence 998889999999999999996543 34689976
No 60
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.79 E-value=3.2e-18 Score=112.43 Aligned_cols=103 Identities=24% Similarity=0.367 Sum_probs=82.1
Q ss_pred CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~~ 74 (161)
.++|.|+|++|++|+..+.. +.+||||.+.+.. ...+|++++ ++.||.|+|+|.|. +... ...|.++||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 46899999999999998875 8899999998852 234566665 89999999999994 4322 34799999999
Q ss_pred CCCCCCceeEEEEEeCccccccC-CccceeEEe
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAG-NVPQQAYNV 106 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~-~~~~~~~~l 106 (161)
+.++++++||++.++|+++...+ ..-..|..+
T Consensus 94 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 94 DRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred CCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 99999999999999999986642 223466665
No 61
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.79 E-value=1.5e-17 Score=110.83 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=93.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC----C
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV----S 78 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~----~ 78 (161)
..|.|.|++|++|+.++ ++||.+.++.... +|++.. ++.+|.|+|+|.|........|.|.||..+.. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~-~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKL-KTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEc-CCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 46899999999998764 7999999999887 555555 88999999999998766667899999876522 2
Q ss_pred CCceeEEEEEeCccccccCCccceeEEeec-CC----------eeceEEEEEEEEEeCC
Q 046962 79 QDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-DK----------KFQGEVRVGLTFKPEG 126 (161)
Q Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~----------~~~G~i~l~l~~~~~~ 126 (161)
++.+||.+.++++++..+ .....||.|.. .. ...++|+|++.|.+..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 678999999999999975 44579999982 11 3347999999998753
No 62
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.79 E-value=3.4e-18 Score=111.71 Aligned_cols=91 Identities=30% Similarity=0.453 Sum_probs=78.8
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeC--CCCeEEEEEEecCCCCCC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISE--GTTALKLKIMDSDTVSQD 80 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~l~i~v~~~~~~~~d 80 (161)
.|+|.|+|++|++|+. +..+.+|||++|.+.+...+|++++ ++.||+|+|+|.|.... ....|.|+|||++..++|
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 5899999999999984 5668899999999988877787776 89999999999997432 356999999999999999
Q ss_pred ceeEEEEEeCccccc
Q 046962 81 DFVGEAIIPLHSVFE 95 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~ 95 (161)
++||++.++|.....
T Consensus 105 d~IG~~~i~l~~~~~ 119 (127)
T cd04032 105 DLLGTCSVVPEAGVH 119 (127)
T ss_pred CeeEEEEEEecCCce
Confidence 999999999986654
No 63
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=5.8e-18 Score=109.18 Aligned_cols=109 Identities=23% Similarity=0.365 Sum_probs=88.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCcee
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~i 83 (161)
|+|+|++|++|+..+..+.+||||.+.+.... .+|+.+. ++.+|.|+++|.|.+... ...+.|+||+++..+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~-~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK-KTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec-CCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 57999999999999888889999999997544 4555654 899999999999998764 46899999999988899999
Q ss_pred EEEEEeCccccccCCccceeEEee-cCCeeceEE
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVV-KDKKFQGEV 116 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~-~~~~~~G~i 116 (161)
|++.+++.++..+.. ...|+.|. ..+...|.|
T Consensus 80 G~~~~~l~~l~~~~~-~~~~~~L~~~g~~~~~~~ 112 (115)
T cd04040 80 GSAYIDLSDLEPEET-TELTLPLDGQGGGKLGAV 112 (115)
T ss_pred EEEEEEHHHcCCCCc-EEEEEECcCCCCccCceE
Confidence 999999999887533 46788886 344444544
No 64
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.78 E-value=4e-18 Score=116.12 Aligned_cols=104 Identities=23% Similarity=0.353 Sum_probs=85.0
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEE
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIM 72 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~ 72 (161)
+.|+|.|+|++|++|+..+..+.+||||.+.+. ....+|++++ ++.||.|+|.|.|.+... ...|.|+||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 568999999999999999988899999999884 2334566665 899999999999985432 247999999
Q ss_pred ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
|++.++++++||++.+++.++...+. ...|+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~-~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQ-AVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCC-ccccccCC
Confidence 99999889999999999999876433 35677663
No 65
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.78 E-value=1.7e-17 Score=111.56 Aligned_cols=123 Identities=17% Similarity=0.291 Sum_probs=92.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEc----C-eeeEEEEeeCCCCCCeeccEEEEEEeCC---------CCeEEE
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR----T-QEKRSSVASGQGTTPNWNENFVFTISEG---------TTALKL 69 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~----~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~---------~~~l~i 69 (161)
+.|+|....+.+|+..+..+.+||||++++. . ...+|++++ +++||+|||+|.|.+... ...|.+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 3444444444447777777889999999972 2 234565665 999999999999998654 247999
Q ss_pred EEEecCCC-CCCceeEEEEEeCccccccCCccceeEEeec-CCeeceEEEEEEEEEeCCCC
Q 046962 70 KIMDSDTV-SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-DKKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 70 ~v~~~~~~-~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~~~~G~i~l~l~~~~~~~~ 128 (161)
+|||.+.+ .+|++||++.++|+.+...... ..|+.|.. ....-|.|++++..-.+...
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~ 142 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEI-HESVDLMDGRKATGGKLEVKVRLREPLTG 142 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcc-eEEEEhhhCCCCcCCEEEEEEEecCCCcc
Confidence 99999976 5799999999999999876543 36888874 34456799999997644443
No 66
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.78 E-value=6.9e-18 Score=110.08 Aligned_cols=102 Identities=25% Similarity=0.387 Sum_probs=84.9
Q ss_pred CeEEEEEEEeecCCCCCC-CCCCCCcEEEEEEc---CeeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC
Q 046962 3 KGTLEVLLVCAKGLQDTD-FLSNMDPYVVLSCR---TQEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~-~~~~~dp~v~i~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~ 75 (161)
.+.|.|+|++|++|+..+ ..+.+||||.+++. ....+|++. +++.+|.|+|.|.|.+... ...|.|+||+.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~-~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVK-RKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeE-cCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 578999999999999998 57889999999984 223345555 4999999999999998654 357999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
..+++++||++.++|.++..... ...|+.|
T Consensus 92 ~~~~~~~iG~~~i~L~~l~~~~~-~~~w~~L 121 (123)
T cd08390 92 RFSRHCIIGHVLFPLKDLDLVKG-GVVWRDL 121 (123)
T ss_pred cCCCCcEEEEEEEeccceecCCC-ceEEEeC
Confidence 88889999999999999988654 3589887
No 67
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=4.6e-18 Score=109.09 Aligned_cols=99 Identities=22% Similarity=0.420 Sum_probs=82.7
Q ss_pred CCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCc
Q 046962 22 LSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNV 99 (161)
Q Consensus 22 ~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~ 99 (161)
+|.+||||.+.+++... +|++.. ++.||.|++.|.|.+... ...|.|.||+++.. ++++||.+.++|+++......
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 57899999999987654 555544 899999999999998765 45799999999988 899999999999999765444
Q ss_pred cceeEEeecCCeeceEEEEEEEEEe
Q 046962 100 PQQAYNVVKDKKFQGEVRVGLTFKP 124 (161)
Q Consensus 100 ~~~~~~l~~~~~~~G~i~l~l~~~~ 124 (161)
...||.|.. ...|+|++++.|.|
T Consensus 88 ~~~w~~L~~--~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSG--NGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCC--CCCCEEEEEEEEec
Confidence 568999853 46899999999987
No 68
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.78 E-value=5.4e-18 Score=114.03 Aligned_cols=99 Identities=33% Similarity=0.499 Sum_probs=82.5
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----------------------------eeEEEEeeCCCCCCe
Q 046962 1 MPKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----------------------------EKRSSVASGQGTTPN 51 (161)
Q Consensus 1 ~~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----------------------------~~~t~~~~~~~~~P~ 51 (161)
+|.+.|.|+|++|++|+..+..+.+||||.+.+... ..+|.+.. ++++|.
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~ 103 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPV 103 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCc
Confidence 467899999999999999998899999999998531 13444554 899999
Q ss_pred eccEEEEEEeCC-CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 52 WNENFVFTISEG-TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 52 w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
|+++|.|.+... ...|.|+|||++ +++||++.++++++... . ...||.|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~-~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-G-LDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-C-CCCeEeC
Confidence 999999998764 468999999987 78999999999999843 2 4689976
No 69
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=1.1e-17 Score=107.39 Aligned_cols=99 Identities=23% Similarity=0.374 Sum_probs=83.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-----CCeEEEEEEecCCCC
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLKIMDSDTVS 78 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~l~i~v~~~~~~~ 78 (161)
-.|+|+|++|++|+ .+.+||||.+.++++..+|+... ++.+|.|+|+|.|.+... ...|.|+|||.+.++
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 36899999999998 46899999999998877777766 889999999999997543 257999999999888
Q ss_pred CCceeEEEEEeCccccccCC--ccceeEEee
Q 046962 79 QDDFVGEAIIPLHSVFEAGN--VPQQAYNVV 107 (161)
Q Consensus 79 ~d~~iG~~~~~l~~l~~~~~--~~~~~~~l~ 107 (161)
++++||++.++|+++..+.. ....|+.|.
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 89999999999999976533 346788874
No 70
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.78 E-value=5.8e-18 Score=110.62 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=83.3
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEE-EeCC---CCeEEEEEEecC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFT-ISEG---TTALKLKIMDSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~l~i~v~~~~ 75 (161)
.++|.|+|++|++|+..+..+.+||||.+.+.. ...+|++.+ + .||+|||+|.|+ +... ...|.++||+++
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 468999999999999999888899999987732 233444543 5 999999999998 5543 458999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.++++++||++.++|+++... .....||.|.
T Consensus 93 ~~~~~~~lG~~~i~L~~l~~~-~~~~~w~~L~ 123 (124)
T cd08389 93 RMRKERLIGEKVVPLSQLNLE-GETTVWLTLE 123 (124)
T ss_pred CcccCceEEEEEEeccccCCC-CCceEEEeCC
Confidence 998999999999999999765 4456899873
No 71
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.77 E-value=1.4e-17 Score=107.64 Aligned_cols=109 Identities=23% Similarity=0.376 Sum_probs=83.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCCCCc
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVSQDD 81 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~~d~ 81 (161)
|.|+|++|++|+.. +.+||||.+.+.... .+|+... + .+|.|+|+|.|.+... ...|.+.+|+.+....+.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999876 689999999998754 4566665 6 9999999999998774 246788889888665666
Q ss_pred eeEEEEEeCccccccCCccceeEEeec---CCeeceEEEEEEEE
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYNVVK---DKKFQGEVRVGLTF 122 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~ 122 (161)
++|.+.+ ..+..+ .....||.|.. .....|+|+|.+.|
T Consensus 77 ~~g~v~l--~~~~~~-~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVAL--SKLDLG-QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEe--cCcCCC-CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6666554 444433 33468999972 24568999999876
No 72
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-17 Score=128.42 Aligned_cols=124 Identities=27% Similarity=0.407 Sum_probs=101.7
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee---eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE---KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT 76 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~---~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~ 76 (161)
...|+|+|++|++|+..+..+.+||||++++...+ .+|++.+ +++||.|+|+|.|.+... ...|.++||+.+.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 46799999999999999966789999999996433 3455555 999999999999996655 4589999999999
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEeec----CCeeceEEEEEEEEEeCCCC
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK----DKKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~~~~~~ 128 (161)
++++++||++.++|..+..... ...|..+.. .....|+|.++++|.|.+++
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~-~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ 299 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLST-TLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR 299 (421)
T ss_pred cccccEEEEEEecCcccccccc-ceeeeccccccCCcccccceEEEEEEeecCCCe
Confidence 9999999999999888877543 457888872 22233899999999999765
No 73
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=1.3e-17 Score=108.96 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=90.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCee--eEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCce
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE--KRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDDF 82 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~--~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~~ 82 (161)
|+|.|++|++|+..+..+.+||||.+.++... .+|+.++ ++.+|.|+|+|.|.+..+ ...|.|+|||++.++++++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999988999999999998765 3566666 799999999999997654 4589999999999989999
Q ss_pred eEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEeC
Q 046962 83 VGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPE 125 (161)
Q Consensus 83 iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~~ 125 (161)
||++.+++++...... -.+..+..+....|.++..-.+.|.
T Consensus 81 iG~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 81 IGETVIDLEDRFFSKH--RATCGLPPTYEESGPNQWRDSLKPS 121 (124)
T ss_pred eEEEEEeecccccchH--HHhccCCCcccccCceecCcccCcc
Confidence 9999999998765211 1122222333356666666655543
No 74
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=1e-17 Score=110.76 Aligned_cols=93 Identities=25% Similarity=0.423 Sum_probs=79.4
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------eeeEEEEeeCCCCCCeeccEEEEEEeCC-----CCeEEEE
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------QEKRSSVASGQGTTPNWNENFVFTISEG-----TTALKLK 70 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~l~i~ 70 (161)
.+.|+|+|++|++|+..+..+.+||||.+.+.. ...+|++++ ++.||+|+|+|.|.+... ...|.|+
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 368999999999999998888999999999852 234556665 999999999999998652 3489999
Q ss_pred EEecCCCCCCceeEEEEEeCcccccc
Q 046962 71 IMDSDTVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 71 v~~~~~~~~d~~iG~~~~~l~~l~~~ 96 (161)
|||++.++++++||++.++|.++..-
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999998899999999999998853
No 75
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.76 E-value=1.4e-17 Score=110.57 Aligned_cols=99 Identities=29% Similarity=0.507 Sum_probs=84.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEc----CeeeEEEEeeCCCCCCeeccEEEEEEeCC----------------CC
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCR----TQEKRSSVASGQGTTPNWNENFVFTISEG----------------TT 65 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----------------~~ 65 (161)
|.|+|++|++|+.. ..+.+|||+.+.+. ....+|..+. ++.+|.|+++|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57999999999988 77899999999998 4556666666 899999999999997664 34
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 66 ALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 66 ~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.|.|+|||++..+++++||++.+++.++.... ....||.|.
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-~~~~W~~L~ 119 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAG-SHQAWYFLQ 119 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCC-cccceEecC
Confidence 89999999998889999999999999988653 346899986
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.76 E-value=1.6e-17 Score=109.49 Aligned_cols=101 Identities=24% Similarity=0.403 Sum_probs=86.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecCC
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSDT 76 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~~ 76 (161)
+.|.|+|++|++|+..+..+.+||||.+.+.. ...+|+++. ++.+|.|+++|.|.+... ...|.|+||+.+.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 68999999999999988888899999999863 345566665 899999999999998764 3589999999998
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.+++++||++.+++.++... ....||.|.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~ 120 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLL 120 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC--ccCceEECc
Confidence 88999999999999999865 346899985
No 77
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.76 E-value=6.6e-18 Score=111.66 Aligned_cols=101 Identities=20% Similarity=0.392 Sum_probs=83.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.+.|.|+|++|++|+..+..+.+||||.+.+.. ...+|++.+ ++.+|.|+|+|.|.+... ...|.|+|||+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 589999999999999999888999999999853 233556665 999999999999998654 35899999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
+..+++++||++.++++.. +.....|+.+.
T Consensus 91 d~~~~~~~lG~~~i~l~~~---~~~~~~W~~~l 120 (133)
T cd08384 91 DIGKSNDYIGGLQLGINAK---GERLRHWLDCL 120 (133)
T ss_pred CCCCCccEEEEEEEecCCC---CchHHHHHHHH
Confidence 9888999999999999752 22345788764
No 78
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.75 E-value=2.2e-17 Score=109.57 Aligned_cols=102 Identities=22% Similarity=0.406 Sum_probs=80.9
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEe
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMD 73 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~ 73 (161)
+.|+|.|+|++|++|+..+..+.+||||.+.+.. ...+|++.+ ++.||.|+|+|.|.+.... ..|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 3589999999999999998889999999999852 123455544 9999999999999986542 379999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
++.++++++||++.+++...- .....|+.+.
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~~---~~~~~W~~~~ 122 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNATG---AELRHWSDML 122 (136)
T ss_pred CCCCCCCceeEEEEECCccCC---hHHHHHHHHH
Confidence 999999999999999987632 2224565543
No 79
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.75 E-value=1.8e-16 Score=104.03 Aligned_cols=114 Identities=25% Similarity=0.424 Sum_probs=90.3
Q ss_pred eEEEEEEEeecCCCCCC--CCCCCCcEEEEEEc------CeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEec
Q 046962 4 GTLEVLLVCAKGLQDTD--FLSNMDPYVVLSCR------TQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDS 74 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~--~~~~~dp~v~i~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~ 74 (161)
-+|+|+|++|++|+..+ ..+.+||||.+++. ....+|+.....+.+|.|+|+|.|.+.... ..|.|+||++
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47999999999999887 46789999999984 334566666534459999999999987654 4689999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee-cCC--eeceEEEEEEEE
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDK--KFQGEVRVGLTF 122 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~--~~~G~i~l~l~~ 122 (161)
+.. ++++||++.+++.+|..+ ..|+.|. ..+ ...|.|.+.+.+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g----~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG----YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc----eEEEEecCCCCCCCcceeEEEEEEE
Confidence 988 899999999999999543 3577776 222 456889888875
No 80
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.74 E-value=1.5e-17 Score=110.42 Aligned_cols=101 Identities=24% Similarity=0.399 Sum_probs=81.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.++|.|+|++|++|+..+..+.+||||.+.+... ..+|++.+ ++.||.|+|+|.|.+... ...|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 5789999999999999998899999999998432 22344454 899999999999998653 34789999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
+..+++++||++.+++.. . + .....|+.+.
T Consensus 93 d~~~~~~~iG~~~~~~~~-~-~-~~~~~w~~l~ 122 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA-S-G-SGGHHWKEVC 122 (136)
T ss_pred CCCCCCccEEEEEECCcC-C-C-chHHHHHHHH
Confidence 999999999999999988 2 2 2235677764
No 81
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.74 E-value=2.9e-17 Score=108.82 Aligned_cols=90 Identities=23% Similarity=0.447 Sum_probs=74.4
Q ss_pred CeEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcCee----eEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRTQE----KRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
.++|.|.|++|+||+..+. .+.+||||++++.... ++++.+.++++||+|||.|.|.+... ...|.|+||+
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 5789999999999999883 3459999999986422 23344444999999999999998764 3579999999
Q ss_pred cCCCCCCceeEEEEEeCcc
Q 046962 74 SDTVSQDDFVGEAIIPLHS 92 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~ 92 (161)
++.++++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999864
No 82
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.73 E-value=3.7e-17 Score=108.25 Aligned_cols=89 Identities=25% Similarity=0.359 Sum_probs=74.5
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.++|.|+|++|++|+..+..+.+||||++++... +.+|++. ++++||+|||+|.|.+... ...|.|+||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4789999999999999988889999999998432 2234444 4999999999999998654 35899999999
Q ss_pred CCCCCCceeEEEEEeCcc
Q 046962 75 DTVSQDDFVGEAIIPLHS 92 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~ 92 (161)
+..+++++||++.+....
T Consensus 93 d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCCeeEEEEECCCC
Confidence 998999999999997653
No 83
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.71 E-value=2.3e-16 Score=102.51 Aligned_cols=96 Identities=26% Similarity=0.455 Sum_probs=78.9
Q ss_pred EEEeecCCCCCCCCCCCCcEEEEEEcCee-------eEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCC----
Q 046962 9 LLVCAKGLQDTDFLSNMDPYVVLSCRTQE-------KRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDT---- 76 (161)
Q Consensus 9 ~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-------~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~---- 76 (161)
-.++|++|+..+..+.+||||.+.+.... .+|.++. ++.||.|+++|.|.+... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence 34789999999988999999999997653 4566666 899999999999986533 4589999999997
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
.+++++||++.+++.+|..... ...|+.|
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~-~~~~~~l 112 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPG-QKLTLPL 112 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCC-cEEEEEc
Confidence 7899999999999999987543 3456766
No 84
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=1.4e-16 Score=105.89 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=81.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC---e---eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---Q---EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~---~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
.++|.|+|++|++|+..+..+.+||||++.+.. . +++|++.+ ++.||+|||+|.|.+... ...|.|+||+
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 579999999999999998888999999999852 1 23455554 999999999999998754 3589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.+.++++++||++.+++...-.+ ....|+.+.
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~~~--~~~hW~~~l 124 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSGEE--EEEHWNEMK 124 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCCch--HHHHHHHHH
Confidence 99899999999999887744321 123566554
No 85
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.71 E-value=6.2e-17 Score=106.98 Aligned_cols=102 Identities=25% Similarity=0.421 Sum_probs=84.3
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.++|.|+|++|++|+..+..+.+||||.+.+... ..+|++.. ++.+|.|+++|.|.+... ...|.|+||+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 5789999999999999888889999999998643 23455555 899999999999998765 36899999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEeec
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK 108 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~ 108 (161)
+..+++++||++.+++++ . +.....|+.|..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~-~~~~~~W~~l~~ 122 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--G-GEELEHWNEMLA 122 (134)
T ss_pred CCCCCCceeEEEEECCCC--C-CcHHHHHHHHHh
Confidence 988899999999999999 2 233467888763
No 86
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=7.5e-17 Score=140.43 Aligned_cols=117 Identities=17% Similarity=0.406 Sum_probs=99.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-eEEEEeeCCCCCCeeccEEEEEEeCCC--CeEEEEEEecCCCCC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-KRSSVASGQGTTPNWNENFVFTISEGT--TALKLKIMDSDTVSQ 79 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~--~~l~i~v~~~~~~~~ 79 (161)
.|.|.|+|++|.+|. +.++.+||||.+.+++.. .+|++++ ++.||.|+|.|.|.+..+. ..|.|+|||++.+++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 589999999999998 446899999999999774 4556665 9999999999998877653 579999999999854
Q ss_pred CceeEEEEEeCccccccCCccceeEEeecCCeeceE---EEEEEEEEe
Q 046962 80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGE---VRVGLTFKP 124 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~---i~l~l~~~~ 124 (161)
+.+|.+.+++.++...+. ...||.|..++...|+ |+|.+.|.+
T Consensus 2056 -d~~G~~~i~l~~vv~~~~-~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2056 -SSLGKVTIQIDRVVMEGT-YSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCceEEEEHHHHhcCce-eeeeeecCcccccCCCcceEEEEEEecC
Confidence 589999999999998644 4589999877778899 999998865
No 87
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.70 E-value=2e-16 Score=104.67 Aligned_cols=102 Identities=23% Similarity=0.397 Sum_probs=80.2
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEe
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMD 73 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~ 73 (161)
+.++|+|+|++|++|+..+..+.+||||++.+... ..+|++. +++.+|.|+|+|.|.+.... ..|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVK-KNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcc-cCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 46899999999999999998899999999998421 2344444 48999999999999975442 368999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
++.++++++||++.+++.... .....|+.+.
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~~---~~~~~w~~~~ 121 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNADG---QGREHWNEML 121 (134)
T ss_pred CCCCCCCceeEEEEECCCCCC---chHHHHHHHH
Confidence 999999999999999876321 2234566554
No 88
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.70 E-value=2.7e-16 Score=104.22 Aligned_cols=103 Identities=24% Similarity=0.382 Sum_probs=79.1
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEe
Q 046962 2 PKGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMD 73 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~ 73 (161)
..|.|.|+|++|++|+..+..+.+||||.+.+.. ...+|.++ +++.||.|+|+|.|.+... ...|.|+|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~-~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCM-RGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccc-cCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 3589999999999999999888999999999732 12344444 4899999999999998554 2369999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
++..+++++||++.+...... ......|+.+.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~--~~~~~~W~~l~ 122 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSG--PSETNHWRRML 122 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCC--chHHHHHHHHH
Confidence 998889999999876543332 22234677654
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=7.8e-16 Score=100.40 Aligned_cols=94 Identities=28% Similarity=0.458 Sum_probs=78.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~ 73 (161)
.++|.|+|++|++|+..+..+.+||||++.+.. ...+|..+. ++.+|.|+++|.|..... ...|.|+|||
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 578999999999999988888999999998732 234566665 899999999999963322 3589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCC
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGN 98 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~ 98 (161)
.+.. .+++||++.+++++|..+..
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCCcc
Confidence 9988 89999999999999987643
No 90
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=2.7e-16 Score=104.35 Aligned_cols=90 Identities=27% Similarity=0.479 Sum_probs=76.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.++|.|+|++|++|+..+..+.+||||++.+.. ...+|+++. ++.||.|||+|.|.+... ...|.|+|||.
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 478999999999999988888999999998832 123455555 899999999999997643 35799999999
Q ss_pred CCCCCCceeEEEEEeCccc
Q 046962 75 DTVSQDDFVGEAIIPLHSV 93 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l 93 (161)
+..+++++||++.+++.+.
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9998999999999999875
No 91
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.68 E-value=7.3e-16 Score=101.09 Aligned_cols=90 Identities=14% Similarity=0.361 Sum_probs=72.3
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC----e-eeEEEEeeCCCC-CCeeccEEEEEEeCCC--CeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT----Q-EKRSSVASGQGT-TPNWNENFVFTISEGT--TALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~----~-~~~t~~~~~~~~-~P~w~e~~~~~~~~~~--~~l~i~v~~~ 74 (161)
.|+|+|.|++|++|+.......+||||+|++.. . +++|++.+ ++. +|+|||+|.|++.... ..+.++|||+
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 588999999999999876556779999998842 1 23344444 775 6999999999987653 3678999999
Q ss_pred CCCCCCceeEEEEEeCccc
Q 046962 75 DTVSQDDFVGEAIIPLHSV 93 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l 93 (161)
+..+++++||++.+..+..
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 9888999999999998753
No 92
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.67 E-value=9.9e-16 Score=101.72 Aligned_cols=101 Identities=23% Similarity=0.414 Sum_probs=78.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEec
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDS 74 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~ 74 (161)
.++|.|+|++|++|+..+ .+.+||||++.+... .++|++. +++.||.|||+|.|.+... ...|.|+||+.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~-~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVV-DGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccE-eCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 478999999999999988 778999999998532 2344554 4999999999999998654 35899999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
+..+++++||++.+.......+.. ...|..+
T Consensus 92 ~~~~~~~~lG~v~ig~~~~~~~~~-~~hW~~~ 122 (137)
T cd08409 92 GGVRKSKLLGRVVLGPFMYARGKE-LEHWNDM 122 (137)
T ss_pred CCCCCcceEEEEEECCcccCCChH-HHHHHHH
Confidence 988899999999998655443322 2345544
No 93
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.67 E-value=1.5e-15 Score=97.20 Aligned_cols=80 Identities=25% Similarity=0.534 Sum_probs=65.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEec------
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDS------ 74 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~------ 74 (161)
|.|+|.+|+||+ +.+||||.+.+.. ...+|++++ +++||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence 679999999996 4599999998863 234566665 99999999999999975 57999999998
Q ss_pred -CCCCCCceeEEEEEeCcc
Q 046962 75 -DTVSQDDFVGEAIIPLHS 92 (161)
Q Consensus 75 -~~~~~d~~iG~~~~~l~~ 92 (161)
+..+.|+++|++.+.|+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 455789999888887654
No 94
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.67 E-value=3.9e-17 Score=123.13 Aligned_cols=101 Identities=26% Similarity=0.410 Sum_probs=86.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCC--CCeEEEEEEecCC
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEG--TTALKLKIMDSDT 76 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~l~i~v~~~~~ 76 (161)
..|+|+|.+|++|.++|.+|.+|||+.+.+-. .+++|+.++ .++||+|||+|.|.+... .+.|.|+||||+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEecccc
Confidence 57899999999999999999999999999842 223455665 999999999999998776 3589999999999
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.++++|+|...+.+++|..... ..||.|+
T Consensus 259 TsRNDFMGslSFgisEl~K~p~--~GWyKlL 287 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAPV--DGWYKLL 287 (683)
T ss_pred cccccccceecccHHHHhhcch--hhHHHHh
Confidence 9999999999999999988643 4799876
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.65 E-value=4.2e-15 Score=95.10 Aligned_cols=88 Identities=24% Similarity=0.516 Sum_probs=72.3
Q ss_pred EEEEEeecCCCCCCCCCCCCcEEEEEEcCe------eeEEEEeeCCCCCCeeccEEEEEEeC---C--CCeEEEEEEecC
Q 046962 7 EVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ------EKRSSVASGQGTTPNWNENFVFTISE---G--TTALKLKIMDSD 75 (161)
Q Consensus 7 ~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~------~~~t~~~~~~~~~P~w~e~~~~~~~~---~--~~~l~i~v~~~~ 75 (161)
.+-.++|++|+..+..+.+||||++++... ..+|++++ ++.+|.|+ +|.+.+.. . ...|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 345678999999998899999999988543 24566665 89999999 78877432 1 468999999999
Q ss_pred CCCCCceeEEEEEeCcccccc
Q 046962 76 TVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~ 96 (161)
..++|++||++.+++.+|...
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhcC
Confidence 999999999999999999854
No 96
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.64 E-value=4.6e-15 Score=122.41 Aligned_cols=145 Identities=22% Similarity=0.381 Sum_probs=120.9
Q ss_pred CCeEEEEEEEeecCCCCCC--CCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCC
Q 046962 2 PKGTLEVLLVCAKGLQDTD--FLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQ 79 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~--~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~ 79 (161)
+.|.+.|+|.+|++|...+ ..+..|||+.+.+......++.+++.+.||+|||+|-+.+..-.+.|.++|||.+....
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~s 513 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKS 513 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCC
Confidence 4689999999999999988 45889999999986554444444449999999999999998878899999999999999
Q ss_pred CceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEEeCCCCCCCCCC--CccCCCCCCCCC
Q 046962 80 DDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFKPEGGHGHHSHG--RAAGESHSGGDR 146 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~ 146 (161)
|+.+|.++++|+.|..........+.+..+....|+|...+.|+|..+......+ .|..+...|.+.
T Consensus 514 d~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k 582 (1227)
T COG5038 514 DKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILK 582 (1227)
T ss_pred cceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeE
Confidence 9999999999999988766666678888889999999999999999998876666 334444445443
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.57 E-value=2.2e-14 Score=86.99 Aligned_cols=81 Identities=28% Similarity=0.555 Sum_probs=69.3
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcC---eeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCc
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT---QEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDD 81 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~ 81 (161)
|.|+|++|++|+..+..+.++||+.+.+.. ...+|+... .+.+|.|++.|.|.+... ...|.|+||+++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 789999999999988778999999999986 345566665 889999999999996554 347999999999998899
Q ss_pred eeEEEE
Q 046962 82 FVGEAI 87 (161)
Q Consensus 82 ~iG~~~ 87 (161)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999873
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-14 Score=114.42 Aligned_cols=121 Identities=26% Similarity=0.525 Sum_probs=100.2
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCC------
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTV------ 77 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~------ 77 (161)
.+++++|+.|.+|..+|..|.+|||+.+.++..+.+|+.+. ..+||+|+|.|.|.+.+....|.+.|||.++.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 57899999999999999999999999999998888887777 89999999999999999888999999998753
Q ss_pred -----CCCceeEEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEeCCCC
Q 046962 78 -----SQDDFVGEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 78 -----~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~ 128 (161)
..|+|+|+..+.+..|..+. ..||.|. ......|-|++.|...-..+.
T Consensus 374 qkl~resddflgqtvievrtlsgem---dvwynlekrtdksavsgairlhisveikgee 429 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEM---DVWYNLEKRTDKSAVSGAIRLHISVEIKGEE 429 (1283)
T ss_pred HHhhhcccccccceeEEEEecccch---hhhcchhhccchhhccceEEEEEEEEEcCcc
Confidence 36889999999887776543 4799997 344567877766665444433
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.55 E-value=2.7e-14 Score=112.74 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=107.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCcee
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~i 83 (161)
.|.|+|.+|++|+..+..+..||||.|.++.... ||.++. +++.|-|.|+|.|.+......|.|-|||.+ +++|+.|
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 5889999999999999999999999999987665 566666 999999999999999998889999999999 8899999
Q ss_pred EEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEeCCCC
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~ 128 (161)
|.+.+.=++|.... ....|+.|. .+.+..|+|++++.+.+....
T Consensus 84 GKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS 130 (800)
T ss_pred ceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccCC
Confidence 99999989988765 456899998 577889999999999866554
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.54 E-value=1.6e-13 Score=85.03 Aligned_cols=100 Identities=31% Similarity=0.560 Sum_probs=81.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcC-eeeEEEEeeCCCCCCeeccEEEEEEeC-CCCeEEEEEEecCCCCCCcee
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-QEKRSSVASGQGTTPNWNENFVFTISE-GTTALKLKIMDSDTVSQDDFV 83 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~l~i~v~~~~~~~~d~~i 83 (161)
|.|.|++|++|.........+|||.+.+.. ...+|.... .+.+|.|++.|.|.+.. ....|.|+||+.+....+.++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 478999999998876667899999999987 555666665 78899999999999987 557899999999988778999
Q ss_pred EEEEEeCccccccCCccceeEEe
Q 046962 84 GEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 84 G~~~~~l~~l~~~~~~~~~~~~l 106 (161)
|++.+++.++.........|+.|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998322334466643
No 101
>PLN02270 phospholipase D alpha
Probab=99.53 E-value=7.4e-13 Score=107.45 Aligned_cols=150 Identities=14% Similarity=0.269 Sum_probs=118.2
Q ss_pred CeEEEEEEEeecCCCCCC------------------CCCCCCcEEEEEEcCeeeE-EEEeeCCCCCCeeccEEEEEEeCC
Q 046962 3 KGTLEVLLVCAKGLQDTD------------------FLSNMDPYVVLSCRTQEKR-SSVASGQGTTPNWNENFVFTISEG 63 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~------------------~~~~~dp~v~i~~~~~~~~-t~~~~~~~~~P~w~e~~~~~~~~~ 63 (161)
-|+|.|+|++|++|+..+ ..+.++||+.|.++..+.. |+++.....||.|+|+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 388999999999998521 1135799999999988874 555553356999999999999988
Q ss_pred CCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCee---ceEEEEEEEEEeCCCCCCCCCCCccCC
Q 046962 64 TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKF---QGEVRVGLTFKPEGGHGHHSHGRAAGE 139 (161)
Q Consensus 64 ~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~~---~G~i~l~l~~~~~~~~~~~~~~~~~~~ 139 (161)
...+.|+|.+.+.++ ..+||.+.+|..++..+.. ...|+.+. .++++ ..+|++++.|.|-........|-..+
T Consensus 87 ~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~-i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~~- 163 (808)
T PLN02270 87 ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEE-VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRSA- 163 (808)
T ss_pred cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCc-cccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCCc-
Confidence 889999999999885 4599999999999998754 46899987 33332 24899999999988887777776333
Q ss_pred CCCCCCCCCCCCCCCC
Q 046962 140 SHSGGDRGYGGESYGG 155 (161)
Q Consensus 140 ~~~~~~~~~~~~~~~g 155 (161)
...|+...+..+.-|+
T Consensus 164 ~~~gvp~t~f~~r~g~ 179 (808)
T PLN02270 164 KFPGVPYTFFSQRQGC 179 (808)
T ss_pred CcCCCCCcccccCCCC
Confidence 6788887777766554
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.51 E-value=5e-13 Score=83.09 Aligned_cols=92 Identities=33% Similarity=0.625 Sum_probs=78.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe---eeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCC
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ---EKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQD 80 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d 80 (161)
+|.|.|++|++|.........+||+.+.+... ..+|+... ++.+|.|+++|.|.+... ...|.|+||+....+.+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence 37899999999998876678999999999865 45666665 777999999999999886 67999999999988788
Q ss_pred ceeEEEEEeCccccccC
Q 046962 81 DFVGEAIIPLHSVFEAG 97 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~~ 97 (161)
.++|.+.+++.++..+.
T Consensus 80 ~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 80 DFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ceeEEEEEEHHHcccCc
Confidence 99999999999887653
No 103
>PLN02223 phosphoinositide phospholipase C
Probab=99.39 E-value=1.5e-11 Score=96.39 Aligned_cols=99 Identities=21% Similarity=0.377 Sum_probs=78.6
Q ss_pred eEEEEEEEeecCCCCC-----CCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEEE
Q 046962 4 GTLEVLLVCAKGLQDT-----DFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKIM 72 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~-----~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v~ 72 (161)
.+|.|+|+.|.+++.. +....+||||+|.+.. ..++| .+..++.||.|+|+|.|.+..++. .|.|+|+
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT-~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKT-TVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEE-EeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 5799999999987521 2235689999999852 23345 455689999999999999988865 6899999
Q ss_pred ecCCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 73 DSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 73 ~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
|.+....++|+|+..+|+..|..+- +...|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy----R~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI----RAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc----eeEecc
Confidence 9998888999999999999999862 455554
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=99.38 E-value=1.9e-11 Score=97.37 Aligned_cols=114 Identities=23% Similarity=0.361 Sum_probs=86.6
Q ss_pred eEEEEEEEeecCCCCC------CCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEE
Q 046962 4 GTLEVLLVCAKGLQDT------DFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKI 71 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~------~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v 71 (161)
.+|.|+|++|.+++.. +....+||||.|.+.. ...+|+++. ++.||+|+++|.|.+..+.. .+.|+|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~-nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIE-DNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeecc-CCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 5799999999987532 1123469999998742 344666665 67999999999999888754 678999
Q ss_pred EecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCeeceEEEEEEEE
Q 046962 72 MDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKFQGEVRVGLTF 122 (161)
Q Consensus 72 ~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~~~G~i~l~l~~ 122 (161)
||++..+.++|+|+..+|+..|..+- +|..|. ..+...+.+.|-+.|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy----R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI----RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc----eeEeCcCCCCCCCCCEEEEEEE
Confidence 99998888999999999999999862 577776 455555555555544
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=1.7e-11 Score=80.44 Aligned_cols=91 Identities=24% Similarity=0.346 Sum_probs=72.9
Q ss_pred EEEEEEeecCCCCCC--CCC--CCCcEEEEEEcCe--e-eEEEEeeCCCCC--CeeccEEEEEEeC--------------
Q 046962 6 LEVLLVCAKGLQDTD--FLS--NMDPYVVLSCRTQ--E-KRSSVASGQGTT--PNWNENFVFTISE-------------- 62 (161)
Q Consensus 6 l~v~i~~a~~L~~~~--~~~--~~dp~v~i~~~~~--~-~~t~~~~~~~~~--P~w~e~~~~~~~~-------------- 62 (161)
|+|.|.+|++++..+ ..+ .+||||+..+... . ++|.+.. +++| |.||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEE-ecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 789999999966543 345 3999999998752 3 3455554 8889 9999999988665
Q ss_pred -------C---CCeEEEEEEecCCCCCCceeEEEEEeCccccccC
Q 046962 63 -------G---TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAG 97 (161)
Q Consensus 63 -------~---~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~ 97 (161)
. ...|.++|||.+.+++|+++|.++++|..|..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1 2479999999999999999999999999887753
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.3e-11 Score=95.60 Aligned_cols=90 Identities=29% Similarity=0.514 Sum_probs=75.8
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----eeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEecC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMDSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~~~ 75 (161)
.|+|+|.|++|++|+..+..+..||||++.+... .++++.++++++||+|+|+|.|.+.... -.|.|+||+++
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d 376 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHD 376 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcc
Confidence 4899999999999999999999999999988532 2344555569999999999999887652 37899999999
Q ss_pred CCCCCceeEEEEEeCcc
Q 046962 76 TVSQDDFVGEAIIPLHS 92 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~ 92 (161)
.++.+++||++.+....
T Consensus 377 ~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 377 TLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccccceeeEEEecCCC
Confidence 99999999998887654
No 107
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.32 E-value=8.6e-12 Score=77.57 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=70.5
Q ss_pred EEEEEEeecCCCCCC---CCCCCCcEEEEEEcCeee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCc
Q 046962 6 LEVLLVCAKGLQDTD---FLSNMDPYVVLSCRTQEK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDD 81 (161)
Q Consensus 6 l~v~i~~a~~L~~~~---~~~~~dp~v~i~~~~~~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~ 81 (161)
|.|+|..++++.... +++.++||+.|.++.... +|+. +.||.|+|+|.|++.. ...+.+.|||.... ..-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~-~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGD-QPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC-CcEEEEEEEeCCCC-eec
Confidence 679999999999887 567899999999998753 4444 3599999999999964 57999999999754 556
Q ss_pred eeEEEEEeCcccccc
Q 046962 82 FVGEAIIPLHSVFEA 96 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~ 96 (161)
.||..++.+++|..+
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 899999999998763
No 108
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=101.58 Aligned_cols=120 Identities=22% Similarity=0.387 Sum_probs=93.7
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCCCCCc
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTVSQDD 81 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~~~d~ 81 (161)
.|-|+|.+..|.||+..+..+.+||||.+.+.++...++.+.++++||+|||++.+++.+. ...+.+.|+||+...+++
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd 1118 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKND 1118 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcc
Confidence 5889999999999999999999999999999877554444444999999999999998865 458899999999999999
Q ss_pred eeEEEEEeCccccccCCccceeEE-eecCC--eeceEEEEEEEEEe
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYN-VVKDK--KFQGEVRVGLTFKP 124 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~-l~~~~--~~~G~i~l~l~~~~ 124 (161)
.||.+.++|..|..+..- .|.- |.... ...|.++....|-+
T Consensus 1119 ~lg~~~idL~~l~~~~~~--n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1119 LLGTAEIDLSKLEPGGTT--NSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ccccccccHhhcCcCCcc--ceeeeccCcceEecccEeecceecch
Confidence 999999999999876542 2322 22111 34456665555543
No 109
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.29 E-value=5.9e-11 Score=95.11 Aligned_cols=115 Identities=20% Similarity=0.396 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCC----CCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEEEec
Q 046962 5 TLEVLLVCAKGLQDTDF----LSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKIMDS 74 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~----~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v~~~ 74 (161)
+|.|+|++|.+++.... ....|||+.|.+.. ...+|+++..++.+|.|+|+|.|++..+.. .|+|.|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 69999999997655432 14579999988743 345788788899999999999999999876 679999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEE
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFK 123 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~ 123 (161)
+..++|+|+|+..+|+..|..+- +-..|. ..++ ..-.|-+.+++.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy----RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY----RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCce----eeeeecCCCCccccceeEEEEEEEe
Confidence 99999999999999999998852 233343 2222 234566666654
No 110
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.28 E-value=1.1e-10 Score=93.01 Aligned_cols=93 Identities=24% Similarity=0.395 Sum_probs=74.9
Q ss_pred CeEEEEEEEeecCCCCC------CCCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEE
Q 046962 3 KGTLEVLLVCAKGLQDT------DFLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLK 70 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~------~~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~ 70 (161)
..+|.|+|+.+.+++.. +....+||||+|.+.. ...+|+ +..++.||.|+++|.|.+..++. .|+|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~-v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTK-IEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCccccee-ccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 35799999999987421 2224579999999842 234555 44589999999999999988865 77999
Q ss_pred EEecCCCCCCceeEEEEEeCcccccc
Q 046962 71 IMDSDTVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 71 v~~~~~~~~d~~iG~~~~~l~~l~~~ 96 (161)
|+|.+...+++|+|+..+|+..|..+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCc
Confidence 99999888999999999999999885
No 111
>PLN02352 phospholipase D epsilon
Probab=99.26 E-value=2.4e-10 Score=92.85 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=109.3
Q ss_pred CeEEEEEEEeecCCCCCC----CC-CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCC
Q 046962 3 KGTLEVLLVCAKGLQDTD----FL-SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDT 76 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~----~~-~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~ 76 (161)
-|+|.++|.+|+-+...- .. ...+||+.|.++..+..++ . +..||.|+|+|.+++.... ..+.|+|.+
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~-~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--S-HEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--C-CCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 489999999998332221 11 1239999999998887655 3 5669999999999998886 589999988
Q ss_pred CCCCceeEEEEEeCccccccCCccceeEEee-cCCee-c-eEEEEEEEEEeCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 046962 77 VSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKKF-Q-GEVRVGLTFKPEGGHGHHSHGRAAGESHSGGDRGYGGESY 153 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~~-~-G~i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (161)
...+||.+.+|..+|..+......|+.+. .++++ . .+|++++.|.|.........|-..+ ...|+...+..+.-
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~gvp~~~f~~r~ 159 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEPTWCKILENG-SFQGLRNATFPQRS 159 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcchhhcccCC-CcCCcCCcccccCC
Confidence 36799999999999998755457899987 33332 3 4899999999999988777775443 56788877777665
Q ss_pred CC
Q 046962 154 GG 155 (161)
Q Consensus 154 ~g 155 (161)
|+
T Consensus 160 g~ 161 (758)
T PLN02352 160 NC 161 (758)
T ss_pred CC
Confidence 44
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.22 E-value=5.7e-10 Score=88.82 Aligned_cols=92 Identities=25% Similarity=0.397 Sum_probs=74.1
Q ss_pred eEEEEEEEeecCCCC--C----CCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEE
Q 046962 4 GTLEVLLVCAKGLQD--T----DFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKI 71 (161)
Q Consensus 4 g~l~v~i~~a~~L~~--~----~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v 71 (161)
.+|.|+|+.|.+++. . +....+||||.|.+. ....+|+.+. ++.+|.|+++|.|.+..++. .|+|.|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~-nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLE-DNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecC-CCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 579999999987531 1 122467999999984 3345677776 66899999999999888765 679999
Q ss_pred EecCCCCCCceeEEEEEeCcccccc
Q 046962 72 MDSDTVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 72 ~~~~~~~~d~~iG~~~~~l~~l~~~ 96 (161)
||.+....++|+|+..+|+..|..+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc
Confidence 9999878899999999999999885
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=99.20 E-value=7.7e-10 Score=87.88 Aligned_cols=118 Identities=24% Similarity=0.340 Sum_probs=87.3
Q ss_pred eEEEEEEEeecCCCC---CC---CCCCCCcEEEEEEcC-----eeeEEEEeeCCCCCCee-ccEEEEEEeCCCC-eEEEE
Q 046962 4 GTLEVLLVCAKGLQD---TD---FLSNMDPYVVLSCRT-----QEKRSSVASGQGTTPNW-NENFVFTISEGTT-ALKLK 70 (161)
Q Consensus 4 g~l~v~i~~a~~L~~---~~---~~~~~dp~v~i~~~~-----~~~~t~~~~~~~~~P~w-~e~~~~~~~~~~~-~l~i~ 70 (161)
.+|.|+|++|.+|+. .. ....+||||.|.+.. ...+|+++. ++.+|.| +++|.|.+..++. .|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCceeEEEEE
Confidence 479999999998732 11 223589999998742 334666665 6789999 9999999888754 67899
Q ss_pred EEecCCCCCCceeEEEEEeCccccccCCccceeEEee-cCCe--eceEEEEEEEEEeCC
Q 046962 71 IMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV-KDKK--FQGEVRVGLTFKPEG 126 (161)
Q Consensus 71 v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~-~~~~--~~G~i~l~l~~~~~~ 126 (161)
|+|.+..+.++|+|+..+|+..|..+ -+...|. ..+. ....|.+.+.+.+..
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G----YR~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG----VRAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC----eeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 99999888899999999999999875 2344554 2222 345688888877543
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.19 E-value=3.1e-10 Score=91.64 Aligned_cols=123 Identities=21% Similarity=0.320 Sum_probs=96.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeec-cEEEEEEeCCCC-eEEEEEEecC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWN-ENFVFTISEGTT-ALKLKIMDSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~-e~~~~~~~~~~~-~l~i~v~~~~ 75 (161)
..+|.|.|+.|+.|+.... +...|||.|.+- ...++|+.+..+++||+|+ ++|.|.+.+++- .|+|.|++.+
T Consensus 1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 3678999999999996654 567799999873 4456677666699999999 999999998854 7899999999
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEee---cCCeeceEEEEEEEEEeCCCCCC
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV---KDKKFQGEVRVGLTFKPEGGHGH 130 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~~~ 130 (161)
.++...|||++.+|+..+..+ .+...|. .+.-....|.|.+...|..+.+.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G----fRsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~ 1196 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG----FRSVPLKNGYSEDLELASLLVFIEMRPVLESEE 1196 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc----ceeeecccCchhhhhhhhheeeeEeccccCccc
Confidence 999889999999999998875 2344453 12234566788888777666543
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.17 E-value=7.3e-12 Score=99.73 Aligned_cols=122 Identities=28% Similarity=0.444 Sum_probs=95.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcC-------------e-----------------eeEEEEeeCCCCCCeeccE
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRT-------------Q-----------------EKRSSVASGQGTTPNWNEN 55 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~-------------~-----------------~~~t~~~~~~~~~P~w~e~ 55 (161)
+.|.+.+|++|..++..|.+|||+...+.. + ..+.+.+++.|+||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 445667899999999999999999986520 0 0133556669999999999
Q ss_pred EEEEEeCCC-CeEEEEEEecCCC------------------------------------CCCceeEEEEEeCccccccCC
Q 046962 56 FVFTISEGT-TALKLKIMDSDTV------------------------------------SQDDFVGEAIIPLHSVFEAGN 98 (161)
Q Consensus 56 ~~~~~~~~~-~~l~i~v~~~~~~------------------------------------~~d~~iG~~~~~l~~l~~~~~ 98 (161)
|.|.+..-+ .++.+.|||++.. ..|+|+|++.+|+.++...+-
T Consensus 196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~Gl 275 (1103)
T KOG1328|consen 196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDGL 275 (1103)
T ss_pred eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcchH
Confidence 999987764 4899999997742 248999999999999987543
Q ss_pred ccceeEEee---cCCeeceEEEEEEEEEeCCCCC
Q 046962 99 VPQQAYNVV---KDKKFQGEVRVGLTFKPEGGHG 129 (161)
Q Consensus 99 ~~~~~~~l~---~~~~~~G~i~l~l~~~~~~~~~ 129 (161)
.+||+|. ...+..|++++.+-++...++.
T Consensus 276 --d~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 276 --DQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred --HHHhccCcccccccccceEEEEEEEeeecccc
Confidence 5899997 3456789999999987655543
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=85.43 Aligned_cols=120 Identities=23% Similarity=0.395 Sum_probs=98.3
Q ss_pred CCeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcCeeeEEEEeeCCCCCCeec-cEEEEEEeCC---CCeEEEEEEecCC
Q 046962 2 PKGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRTQEKRSSVASGQGTTPNWN-ENFVFTISEG---TTALKLKIMDSDT 76 (161)
Q Consensus 2 ~~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~-e~~~~~~~~~---~~~l~i~v~~~~~ 76 (161)
+.|+|-|+|..|++||-+|.. ...|.|+.|.+.+..++|.+.. +++||.|| +.|.|+++.. ...|.|.+.|++.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CCCcceeEEEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 358999999999999999865 4579999999999999999888 99999998 8899998765 3489999999998
Q ss_pred CCCCceeEEEEEeCcccccc---------CCccceeEEeec-CCeeceEEEEEEEE
Q 046962 77 VSQDDFVGEAIIPLHSVFEA---------GNVPQQAYNVVK-DKKFQGEVRVGLTF 122 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l~~~---------~~~~~~~~~l~~-~~~~~G~i~l~l~~ 122 (161)
.+.++-||.+.+.++.|..+ +.....|+.+.. -.-.+|+|.+-+..
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 88999999999999887542 234467888763 23467888765554
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.89 E-value=6.3e-10 Score=88.99 Aligned_cols=90 Identities=30% Similarity=0.465 Sum_probs=76.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee-------eEEEEeeCCCCCCeeccEEEEEEeCCC-----CeEEEEEE
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE-------KRSSVASGQGTTPNWNENFVFTISEGT-----TALKLKIM 72 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~-------~~t~~~~~~~~~P~w~e~~~~~~~~~~-----~~l~i~v~ 72 (161)
+|.|.|+.|+++.+.|.+|.+||||.|.+..+. ++|.+.. +++||+|+|.|.|.+..+. --|.|+|.
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh-ccccchhhhheeeecCccccccccceEEEEee
Confidence 466778889999999999999999999987543 3555665 9999999999999987762 26899999
Q ss_pred ecCCCCCCceeEEEEEeCccccc
Q 046962 73 DSDTVSQDDFVGEAIIPLHSVFE 95 (161)
Q Consensus 73 ~~~~~~~d~~iG~~~~~l~~l~~ 95 (161)
|++-...++|-|++.+.|.++..
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccceecccccchHHHHhhCCCCC
Confidence 99998899999999999888754
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.75 E-value=2.7e-08 Score=79.52 Aligned_cols=100 Identities=21% Similarity=0.443 Sum_probs=76.0
Q ss_pred CCCCcEEEEEEcCee----eEEEEeeCCCCCCeeccEEEEEEeCC----------------CCeEEEEEEe-cCCCCCCc
Q 046962 23 SNMDPYVVLSCRTQE----KRSSVASGQGTTPNWNENFVFTISEG----------------TTALKLKIMD-SDTVSQDD 81 (161)
Q Consensus 23 ~~~dp~v~i~~~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~i~v~~-~~~~~~d~ 81 (161)
+.+|||+.+...... .+|...+ ++.+|.|+|.|.|.+... -..|++++|+ ++....+.
T Consensus 149 ~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 559999999875433 3555655 899999999999987654 1268899999 45555689
Q ss_pred eeEEEEEeCccccccCCccceeEEeec--------CCeeceEEEEEEEEEe
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYNVVK--------DKKFQGEVRVGLTFKP 124 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~~ 124 (161)
|+|++.+++..+... .....||.|+. .+...|.+++++.|.-
T Consensus 228 FlGevrv~v~~~~~~-s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQK-SSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hceeEEeehhhhhhc-cCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999999999988743 33458999972 2346789999999973
No 119
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.52 E-value=6.5e-08 Score=79.84 Aligned_cols=89 Identities=25% Similarity=0.272 Sum_probs=75.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeE-EEEeeCCCCCCeeccEEEEEEeCCC-CeEEEEEEecCCCCCCc
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKR-SSVASGQGTTPNWNENFVFTISEGT-TALKLKIMDSDTVSQDD 81 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~-t~~~~~~~~~P~w~e~~~~~~~~~~-~~l~i~v~~~~~~~~d~ 81 (161)
..++|++++|.+|...|..|.+|||+.+.+++.... ......+++||+|.+.|++...-+. ..+.++||+++..++|+
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~ 692 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE 692 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence 457799999999999999999999999999877643 2333349999999999998877663 57899999999999999
Q ss_pred eeEEEEEeCcc
Q 046962 82 FVGEAIIPLHS 92 (161)
Q Consensus 82 ~iG~~~~~l~~ 92 (161)
.||+..+.|++
T Consensus 693 ~iget~iDLEn 703 (1105)
T KOG1326|consen 693 KIGETTIDLEN 703 (1105)
T ss_pred hhhceehhhhh
Confidence 99999998875
No 120
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.50 E-value=2.8e-07 Score=59.40 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=72.4
Q ss_pred EEEEEEeecCCCCCCC-------------CCCCCcEEEEEEc---Ceee-EEEEeeCCCCCCeeccEEEEEEeC------
Q 046962 6 LEVLLVCAKGLQDTDF-------------LSNMDPYVVLSCR---TQEK-RSSVASGQGTTPNWNENFVFTISE------ 62 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~-------------~~~~dp~v~i~~~---~~~~-~t~~~~~~~~~P~w~e~~~~~~~~------ 62 (161)
|.|.|++|.+|+.... .-..++|+.+.+. +... +|+.+. ++.-|.|+.+++|+++-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence 4678888888876310 0136899999853 3333 455555 99999999999998651
Q ss_pred --C--------CCeEEEEEEecCCC----------CCCceeEEEEEeCccccccCCccceeEEe
Q 046962 63 --G--------TTALKLKIMDSDTV----------SQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 63 --~--------~~~l~i~v~~~~~~----------~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
. ...+.++||+...- .+|-++|.+.+|+.+|.........||.+
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 23689999996532 35568999999999998877767789864
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.44 E-value=2.6e-07 Score=77.72 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=80.2
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----ee-EEEEeeCCCCCCeeccEEEEEE-eCC---CCeEEEEEEe
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EK-RSSVASGQGTTPNWNENFVFTI-SEG---TTALKLKIMD 73 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~-~t~~~~~~~~~P~w~e~~~~~~-~~~---~~~l~i~v~~ 73 (161)
.|+|.|-|..+++|+-......+||||+.++... .+ +|++++ ++.+|.|||.....- ..+ .+.|.++||+
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 4789999999999977776678999999999632 23 355555 999999999988762 222 3589999999
Q ss_pred cCCCCCCceeEEEEEeCccccccCCccceeEEe
Q 046962 74 SDTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNV 106 (161)
Q Consensus 74 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l 106 (161)
......+.++|.+.++|.++....+. ..||.|
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~-~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKES-VGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhh-cceeec
Confidence 99888888999999999887664332 379987
No 122
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.33 E-value=1.3e-06 Score=64.27 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=86.2
Q ss_pred CeEEEEEEEeecCCCCCCC--CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCC
Q 046962 3 KGTLEVLLVCAKGLQDTDF--LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQD 80 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~--~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d 80 (161)
.|.|.+++..+++|+.... ....+.||.+.++.+...++.++.....-.|.|+|..++.+. ..+.+-||.|+...++
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RH 128 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQRRH 128 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchhhc
Confidence 5889999999999987654 345789999999988887777765666778899999998866 7899999999987788
Q ss_pred ceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEEEE
Q 046962 81 DFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLTFK 123 (161)
Q Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~ 123 (161)
+++-..-+.+..+............| +++|++.+.+.+.
T Consensus 129 KLC~~g~l~~~~v~rqspd~~~Al~l----ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 129 KLCHLGLLEAFVVDRQSPDRVVALYL----EPRGQPPLRLPLA 167 (442)
T ss_pred cccccchhhhhhhhhcCCcceeeeec----ccCCCCceecccC
Confidence 87655555555555543322122333 6788888887765
No 123
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.16 E-value=4.4e-07 Score=75.15 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=87.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEE---EeCC------C-CeEEEEEEecC
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFT---ISEG------T-TALKLKIMDSD 75 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~---~~~~------~-~~l~i~v~~~~ 75 (161)
++++|.+|+.|...+..+.+|||+.+.+.++.+.|.++. .+++|.|+.+..|. +... + ..+.+++||.+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 345567888999888889999999999999998888887 99999999988875 2211 1 36789999999
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEeecCCeeceEEEEEEE
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVVKDKKFQGEVRVGLT 121 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~ 121 (161)
..+.++|+|+......-+.. .....|+.+.......|.+.++..
T Consensus 287 r~g~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~~l~gd~l~a~e 330 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRPYVMVQ--CPALKWVPTMRGAFLDGDVLIAAE 330 (1105)
T ss_pred hhchHHhhcccccceEEEec--CCccceEEeecccccccchhHHHH
Confidence 99999999998776555444 223578888877777777665553
No 124
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=1.7e-06 Score=64.95 Aligned_cols=104 Identities=22% Similarity=0.243 Sum_probs=84.3
Q ss_pred CeEEEEEEEeecCCCCCCCC-CCCCcEEEEEEcCeee-----EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEe-cC
Q 046962 3 KGTLEVLLVCAKGLQDTDFL-SNMDPYVVLSCRTQEK-----RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMD-SD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~-~~~dp~v~i~~~~~~~-----~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~-~~ 75 (161)
.|.+.|.|++|++|..+... ..+.||+.|++..... +|+... ++.+|.+.....|.-..+...|.++||. ..
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 47899999999999887543 3689999999865432 344554 8889988888888888887899999995 56
Q ss_pred CCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 76 TVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.+.++.|+|.+++-+.+|.........||+|.
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 77788999999999999988765667899996
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=6.1e-06 Score=61.09 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=68.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcC----eeeEEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCC
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT----QEKRSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDT 76 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~ 76 (161)
.-+.|++++|..|...|..+.+|||+...+.. .-++.+-..+.+.+|.|++.|.+.+... ...+.|.||+.+.
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~ 312 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI 312 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC
Confidence 45889999999999999999999999998852 1223444455999999999999998776 3489999999998
Q ss_pred CCCCceeEEEEEe
Q 046962 77 VSQDDFVGEAIIP 89 (161)
Q Consensus 77 ~~~d~~iG~~~~~ 89 (161)
....+++|-....
T Consensus 313 G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 313 GKSNDSIGGSMLG 325 (362)
T ss_pred CcCccCCCccccc
Confidence 7777888765543
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=6.9e-07 Score=65.94 Aligned_cols=124 Identities=20% Similarity=0.302 Sum_probs=89.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe-----eeEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ-----EKRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS 74 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~-----~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~ 74 (161)
.++..+|.+|++|+..+..+..|||+...+..- ..++.+.. +++||.|+|.....--.. ...+.+.|++.
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeeccC
Confidence 467899999999999999999999999988532 24555665 899999998776553222 24678999999
Q ss_pred CCCCCCceeEEEEEeCccccccCCccc-eeEEee--------cCCeeceEEEEEEEEEeCCCC
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQ-QAYNVV--------KDKKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~-~~~~l~--------~~~~~~G~i~l~l~~~~~~~~ 128 (161)
+.+.+..++|+..+++..|........ .|+... .+.+.+|.|.+++.|......
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~ 234 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPG 234 (362)
T ss_pred cccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCc
Confidence 999899999999988877765332111 222111 123678999999998765554
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=98.01 E-value=1.5e-05 Score=64.92 Aligned_cols=85 Identities=18% Similarity=0.333 Sum_probs=68.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEE-EEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCC-eEEEEEEecCCCCCCc
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYV-VLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTT-ALKLKIMDSDTVSQDD 81 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v-~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~-~l~i~v~~~~~~~~d~ 81 (161)
|.+.|++++|+ ++ ..|+|+ .+.++.+.++|.... .+.+|+||+...|.+...+. ...|.|||++.+.+++
T Consensus 54 ~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 54 GIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSD-STDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred CeEEEEeehhh----hc---cCCcEEEEEEecceeeeecccc-ccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 66778888887 22 246665 456778888888887 99999999988888877754 4689999999999999
Q ss_pred eeEEEEEeCcccccc
Q 046962 82 FVGEAIIPLHSVFEA 96 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~ 96 (161)
++|.+.++|.++...
T Consensus 126 lv~~~e~~~t~f~~k 140 (644)
T PLN02964 126 LVGYCELDLFDFVTQ 140 (644)
T ss_pred hhhheeecHhhccHH
Confidence 999999988887664
No 128
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.97 E-value=8.4e-06 Score=49.18 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=61.3
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEE----EEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC---CeEEEEEEecCCCC
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVL----SCRTQEKRSSVASGQGTTPNWNENFVFTISEGT---TALKLKIMDSDTVS 78 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i----~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~---~~l~i~v~~~~~~~ 78 (161)
+.|+++.|+||.-...-+ -+|-+-| .+.+.-..++.++.+..||.|+|+|.|.+...+ -.|-|.|++ .+.
T Consensus 1 iwitv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~ 77 (103)
T cd08684 1 IWITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP 77 (103)
T ss_pred CEEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence 368999999986554322 2333333 233433344555559999999999999875542 278889988 556
Q ss_pred CCceeEEEEEeCcccccc
Q 046962 79 QDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 79 ~d~~iG~~~~~l~~l~~~ 96 (161)
+.+.||.+.+.++++-.+
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 788999999999988664
No 129
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=9.5e-05 Score=59.64 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=77.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcC------eeeEEEEeeCCCCCCeeccEEEEEEeCCC----CeEEEEEEec
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRT------QEKRSSVASGQGTTPNWNENFVFTISEGT----TALKLKIMDS 74 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~~----~~l~i~v~~~ 74 (161)
+++|+|+.|++|+=.. .+.-.||+.+.+.. +++-++..+.++-.|.+||+|.|-+.+.+ ..|.+.|-|+
T Consensus 1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 6789999999986443 46778999998742 22234444457778999999999987763 3788888887
Q ss_pred CCCCCCceeEEEEEeCccccccCCccceeEEee
Q 046962 75 DTVSQDDFVGEAIIPLHSVFEAGNVPQQAYNVV 107 (161)
Q Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~ 107 (161)
.-.+.|..+|.+.+.|.++...+. ...|+.|-
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS-~a~W~pLg 1236 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGS-CACWVPLG 1236 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCc-eeEeeecc
Confidence 766678899999999999988744 56899885
No 130
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.82 E-value=0.0025 Score=42.28 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=79.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCee---eEEEEeeCCCCCCeeccEEEEEEeCC---------CCeEEEEE
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQE---KRSSVASGQGTTPNWNENFVFTISEG---------TTALKLKI 71 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~---~~t~~~~~~~~~P~w~e~~~~~~~~~---------~~~l~i~v 71 (161)
-.+.|.|.+..+++. .....++.+..++.. ..+....-.+-.-.|+++|.+.+... ...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 357788899988876 234455666555543 23333332444579999998875322 23688999
Q ss_pred EecCCCCCCceeEEEEEeCccccccC-CccceeEEeecCCeeceEEEEEEEEEeCCCC
Q 046962 72 MDSDTVSQDDFVGEAIIPLHSVFEAG-NVPQQAYNVVKDKKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 72 ~~~~~~~~d~~iG~~~~~l~~l~~~~-~~~~~~~~l~~~~~~~G~i~l~l~~~~~~~~ 128 (161)
+.....++...+|.+.+.|++..... ......+.|.........|.|+|.+.+..+.
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 88753333368999999999998853 3333445554444667789999998876544
No 131
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.80 E-value=3.5e-05 Score=58.84 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=82.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEc-----CeeeEEEEeeCCCCCCeeccEEEEEEeCC------------CCeEE
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCR-----TQEKRSSVASGQGTTPNWNENFVFTISEG------------TTALK 68 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~------------~~~l~ 68 (161)
|.+.|+++.+++...-.-..|.|+.+.+. ....+|.+++ .+.+|.|++.|-+.+... ...+.
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 45666777766554423346788888764 2233456666 999999999999998762 23689
Q ss_pred EEEEecCCC-CCCceeEEEEEeCccccccCCccceeEEeec-CCeeceEEEEEEEEE
Q 046962 69 LKIMDSDTV-SQDDFVGEAIIPLHSVFEAGNVPQQAYNVVK-DKKFQGEVRVGLTFK 123 (161)
Q Consensus 69 i~v~~~~~~-~~d~~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~~~~G~i~l~l~~~ 123 (161)
|++|+...+ ..|.++|.+.+.|.-|.....+. ..+.|.. ....-|.|.+.+.+-
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~-e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEIC-EYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchh-hceeccccccccCCeeEEEEEEe
Confidence 999998754 57889999999999888766653 3466653 344567888888865
No 132
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.73 E-value=0.00096 Score=44.91 Aligned_cols=122 Identities=19% Similarity=0.297 Sum_probs=83.6
Q ss_pred EEEEEEEeecCCCCCCCC--CCCCcE--EEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCC--------------Ce
Q 046962 5 TLEVLLVCAKGLQDTDFL--SNMDPY--VVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGT--------------TA 66 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~--~~~dp~--v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~--------------~~ 66 (161)
-|.+.|..++-....... +..+.. +-+.+.++++++..+. .+.+|.|++.|.|++.... ..
T Consensus 10 yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred EEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 367777777643322110 233334 4445678888888887 9999999999999987652 36
Q ss_pred EEEEEEecCCCCCCceeEEEEEeCccccccCCcc-ceeEEee----cCCeeceEEEEEEEEEeCCC
Q 046962 67 LKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVP-QQAYNVV----KDKKFQGEVRVGLTFKPEGG 127 (161)
Q Consensus 67 l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~-~~~~~l~----~~~~~~G~i~l~l~~~~~~~ 127 (161)
|.+.|-..+..+...++|...+........+... .....|. ......|.|.|++.+.|...
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 8888888887766789999888888777754421 1122333 22347899999999998754
No 133
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.70 E-value=0.0018 Score=49.17 Aligned_cols=119 Identities=13% Similarity=0.264 Sum_probs=89.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--------CCeEEEEEEecC-C
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--------TTALKLKIMDSD-T 76 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~l~i~v~~~~-~ 76 (161)
+.|.|++|++++.. ..-...+...+++....|..+. .+..|.|+.+...+++.. ...|+++||..+ .
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 57899999999866 2455677778888888888776 888999998887776543 357999999988 5
Q ss_pred CCCCceeEEEEEeCccc---ccc-CCccceeEEeecC----CeeceEEEEEEEEEeCCCC
Q 046962 77 VSQDDFVGEAIIPLHSV---FEA-GNVPQQAYNVVKD----KKFQGEVRVGLTFKPEGGH 128 (161)
Q Consensus 77 ~~~d~~iG~~~~~l~~l---~~~-~~~~~~~~~l~~~----~~~~G~i~l~l~~~~~~~~ 128 (161)
.+..+.+|.+.++|... ... ......||.|... ...+.+|.+.+........
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~ 137 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP 137 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence 56778999999998777 332 1356789999822 2345788888888766553
No 134
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.55 E-value=0.00032 Score=55.57 Aligned_cols=83 Identities=27% Similarity=0.500 Sum_probs=63.0
Q ss_pred EeecCCCCCCCCCCCCcEEEEEEc--Ce----eeEEEEeeCCCCCCeeccEEEEEE---eC--CCCeEEEEEEecCCCCC
Q 046962 11 VCAKGLQDTDFLSNMDPYVVLSCR--TQ----EKRSSVASGQGTTPNWNENFVFTI---SE--GTTALKLKIMDSDTVSQ 79 (161)
Q Consensus 11 ~~a~~L~~~~~~~~~dp~v~i~~~--~~----~~~t~~~~~~~~~P~w~e~~~~~~---~~--~~~~l~i~v~~~~~~~~ 79 (161)
.+|.+|..++.++++|||..+.-. .. -.++.+++ ++++|.|. .|.+.. .. ....+.+.+|+.+..++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCC
Confidence 457888889999999999998653 21 23556665 99999996 444442 22 24688999999999999
Q ss_pred CceeEEEEEeCccccc
Q 046962 80 DDFVGEAIIPLHSVFE 95 (161)
Q Consensus 80 d~~iG~~~~~l~~l~~ 95 (161)
++++|++..++..+..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999988888863
No 135
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.52 E-value=0.00022 Score=59.18 Aligned_cols=86 Identities=23% Similarity=0.475 Sum_probs=65.7
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc-------CeeeEEEEeeCCCCCCeec-cEEEEE-EeCCC-CeEEEEEE
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR-------TQEKRSSVASGQGTTPNWN-ENFVFT-ISEGT-TALKLKIM 72 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~-------~~~~~t~~~~~~~~~P~w~-e~~~~~-~~~~~-~~l~i~v~ 72 (161)
.+++.|+|++|.-|..++ ..+||.|.+- .+.++|+.+..+++||+|+ +.|.|. +.-+. ..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 468999999999987664 5589999873 2345677777799999998 667776 33332 38999999
Q ss_pred ecCCCCCCceeEEEEEeCcccccc
Q 046962 73 DSDTVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 73 ~~~~~~~d~~iG~~~~~l~~l~~~ 96 (161)
+.+ .+++|+=.+|+..|..+
T Consensus 778 eEg----gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ccC----CceeeeeccchhcccCc
Confidence 977 45899988998877654
No 136
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.39 E-value=0.0034 Score=38.24 Aligned_cols=85 Identities=13% Similarity=0.172 Sum_probs=63.6
Q ss_pred CCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCcccee
Q 046962 24 NMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQA 103 (161)
Q Consensus 24 ~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~ 103 (161)
..+..+.+.+++.....+.-+ ...+..|++.|.+++... +.|.|.||..|. .++.|-..+.|++...+ ..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~~~~-----~~ 77 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDERHE-----VQ 77 (98)
T ss_pred ccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhhccc-----ce
Confidence 356678888888877666665 556899999999999876 899999998874 45788888999983221 22
Q ss_pred EEeecCCeeceEEEEEEEE
Q 046962 104 YNVVKDKKFQGEVRVGLTF 122 (161)
Q Consensus 104 ~~l~~~~~~~G~i~l~l~~ 122 (161)
..+ .+.|.+...++|
T Consensus 78 ~~l----epqg~l~~ev~f 92 (98)
T cd08687 78 LDM----EPQLCLVAELTF 92 (98)
T ss_pred ecc----ccccEEEEEEEe
Confidence 333 667888877777
No 137
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.22 E-value=0.02 Score=38.87 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD 73 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~ 73 (161)
..+.|+|+.+.++...+ ..+.|+.+.+ +.+.. .|+.+. ..++.|+|...|++... ...|.|++|+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 46889999999987653 4677887755 33222 233332 35799999999987654 3489999998
Q ss_pred cCCCC----CCceeEEEEEeCcccc
Q 046962 74 SDTVS----QDDFVGEAIIPLHSVF 94 (161)
Q Consensus 74 ~~~~~----~d~~iG~~~~~l~~l~ 94 (161)
..... ....+|.+.++|.+..
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECCC
Confidence 75321 2246999999988744
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.13 E-value=0.0051 Score=42.29 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=62.4
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEc--Ceee----EEEEe---eCCCCCCeeccEEEEEEeCC----CCeEEE
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCR--TQEK----RSSVA---SGQGTTPNWNENFVFTISEG----TTALKL 69 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~--~~~~----~t~~~---~~~~~~P~w~e~~~~~~~~~----~~~l~i 69 (161)
...+.|+|.++.+++........+.|+.+.+- .+.. .|... ..-...+.|+|.+.|++... +..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 34688999999999887755567888888653 3322 22211 10123567999999987543 348999
Q ss_pred EEEecCCCC---------CCceeEEEEEeCcccc
Q 046962 70 KIMDSDTVS---------QDDFVGEAIIPLHSVF 94 (161)
Q Consensus 70 ~v~~~~~~~---------~d~~iG~~~~~l~~l~ 94 (161)
++|+..... .+..||.+.++|-+..
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999876543 3568999999988754
No 139
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.07 E-value=0.012 Score=40.60 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=59.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEe
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMD 73 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~ 73 (161)
..+.|+|..+.++...+ ...+.|+.+.+ +.+.. .|.... ....+.|+|.+.|++.-. ...|.|+||+
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 46889999999998622 34666777654 33322 233332 346799999999987544 2489999998
Q ss_pred cCCCC----------------CCceeEEEEEeCccccc
Q 046962 74 SDTVS----------------QDDFVGEAIIPLHSVFE 95 (161)
Q Consensus 74 ~~~~~----------------~d~~iG~~~~~l~~l~~ 95 (161)
..... .+..||.+.++|-+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~ 122 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG 122 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEcccc
Confidence 65321 24588988888877443
No 140
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.73 E-value=0.028 Score=37.94 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=58.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee---EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK---RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS 74 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~---~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~ 74 (161)
..++|++....++...+ ....+.|+.+.+ +.+.. .++.......++.|+|.+.|++... +..|.|++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35778888877765521 134566666654 23211 2232221336799999999986544 34899999997
Q ss_pred CCCC--CCceeEEEEEeCccccc
Q 046962 75 DTVS--QDDFVGEAIIPLHSVFE 95 (161)
Q Consensus 75 ~~~~--~d~~iG~~~~~l~~l~~ 95 (161)
.... .+..||.+.++|-+...
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~~ 109 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYKG 109 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcccC
Confidence 7543 46799999999987543
No 141
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.64 E-value=0.022 Score=38.74 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=49.3
Q ss_pred CCCCcEEEEEEc--Ceee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecCCCCCCceeEEEEEeCcc
Q 046962 23 SNMDPYVVLSCR--TQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSDTVSQDDFVGEAIIPLHS 92 (161)
Q Consensus 23 ~~~dp~v~i~~~--~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~d~~iG~~~~~l~~ 92 (161)
..++.||.+.+- .+.. .|.... -+..+.|||...|++... ...|.|+||+....++...+|.+.++|.+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 357778877653 2222 232222 455688999999997655 24899999998765567799999999987
Q ss_pred c
Q 046962 93 V 93 (161)
Q Consensus 93 l 93 (161)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 5
No 142
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.56 E-value=0.036 Score=35.11 Aligned_cols=94 Identities=12% Similarity=0.189 Sum_probs=50.6
Q ss_pred EEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC--------CCeEEEEEEecCCCCCCceeEEEEEeCccccccCC-
Q 046962 28 YVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG--------TTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGN- 98 (161)
Q Consensus 28 ~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~- 98 (161)
||.+.+-.-...++.+. .+.+|.++-+-.+.+... ...+.++++..-.. ....+|.+++++..+....+
T Consensus 2 Fct~dFydfEtq~Tpvv-~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVV-RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---E-ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeecccce-eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCc
Confidence 67777655554555444 588999998878877665 35799999987743 46789999999999986443
Q ss_pred ccceeEEee-cCCeeceEEEEEEEEE
Q 046962 99 VPQQAYNVV-KDKKFQGEVRVGLTFK 123 (161)
Q Consensus 99 ~~~~~~~l~-~~~~~~G~i~l~l~~~ 123 (161)
.......|. .++...|.|...++..
T Consensus 80 ~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 RIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred eEEEEEEEeccCCCeEEEEEEEEEec
Confidence 222334444 4555889998888765
No 143
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.01 E-value=0.3 Score=33.85 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=41.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCcEEEEEE--cCee---eEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEec
Q 046962 4 GTLEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQE---KRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDS 74 (161)
Q Consensus 4 g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~---~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~ 74 (161)
..++|+|..+.. +..+.......||.+.+ +... .+|+... .+.++.|+|.+.|++... ...|.|+||+.
T Consensus 10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 357788887763 33322223345555533 2221 1333332 456799999999987654 24899999986
Q ss_pred C
Q 046962 75 D 75 (161)
Q Consensus 75 ~ 75 (161)
.
T Consensus 88 ~ 88 (178)
T cd08399 88 K 88 (178)
T ss_pred e
Confidence 4
No 144
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.47 E-value=0.17 Score=40.66 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=45.0
Q ss_pred EEEEeeCCCCCCeeccEEEEEEeCC-CCeEEEEEEecCCC----CCCceeEEEEEeCcccccc
Q 046962 39 RSSVASGQGTTPNWNENFVFTISEG-TTALKLKIMDSDTV----SQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 39 ~t~~~~~~~~~P~w~e~~~~~~~~~-~~~l~i~v~~~~~~----~~d~~iG~~~~~l~~l~~~ 96 (161)
++.++. +.+||.|-+.|.+....+ .+.+++.+++-+.. ..++|+|+..+.+..+...
T Consensus 44 rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 44 RTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 566776 999999999888876655 35889999986633 4567999999999887764
No 145
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.41 E-value=0.019 Score=46.96 Aligned_cols=100 Identities=9% Similarity=0.062 Sum_probs=67.1
Q ss_pred CCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccce
Q 046962 23 SNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102 (161)
Q Consensus 23 ~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~ 102 (161)
...++|+.|.+..........++.+..|.|+++|...+... ..+.|.|+.......+.+...+.+-.+++.........
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 34688999988766554444455899999999999996665 78889999877555555555555544454442222345
Q ss_pred eEEeecCCeeceEEEEEEEEEeCCC
Q 046962 103 AYNVVKDKKFQGEVRVGLTFKPEGG 127 (161)
Q Consensus 103 ~~~l~~~~~~~G~i~l~l~~~~~~~ 127 (161)
|..+ +..|++...+.+.-...
T Consensus 105 w~~~----~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 105 WVLI----EELGTLLKPAALTGTLE 125 (694)
T ss_pred cccc----ccccceeeeecccCcCC
Confidence 6655 56688888888765444
No 146
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=94.31 E-value=0.83 Score=31.32 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=52.9
Q ss_pred CCCcEEEEEEcCeeeEEEEeeC--CCCCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccc
Q 046962 24 NMDPYVVLSCRTQEKRSSVASG--QGTTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFE 95 (161)
Q Consensus 24 ~~dp~v~i~~~~~~~~t~~~~~--~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~ 95 (161)
...-|+++.+.++...++..+. ....-.|++.|.+.+..-=..|.++||.... ..+.+|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 4677999999888776555442 2333466788888886644699999999987 578899999999766544
No 147
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=94.18 E-value=0.77 Score=30.43 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=36.8
Q ss_pred CCCeeccEEEEEEeCC----CCeEEEEEEecCCCCCC----ceeEEEEEeCcccc
Q 046962 48 TTPNWNENFVFTISEG----TTALKLKIMDSDTVSQD----DFVGEAIIPLHSVF 94 (161)
Q Consensus 48 ~~P~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~d----~~iG~~~~~l~~l~ 94 (161)
..+.|+|.+.|++.-. ...|.|+||........ ..||.+.++|-+..
T Consensus 32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 6899999999997543 34899999998765444 68999999998863
No 148
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.15 E-value=0.52 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=32.2
Q ss_pred EEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCC-CC--ceeEEEEEeCcc
Q 046962 41 SVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVS-QD--DFVGEAIIPLHS 92 (161)
Q Consensus 41 ~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~-~d--~~iG~~~~~l~~ 92 (161)
+.+...+.+|.|+|+|.+.+... ...|.|++++...-. ++ ..+|-+.+||.+
T Consensus 63 S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 63 SSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp ----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 33444678999999999998776 348999999865321 22 699999999987
No 149
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.19 E-value=0.55 Score=32.85 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=38.1
Q ss_pred EEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCCC-C-CceeEEEEEeCc
Q 046962 39 RSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTVS-Q-DDFVGEAIIPLH 91 (161)
Q Consensus 39 ~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~~-~-d~~iG~~~~~l~ 91 (161)
++.+.. ...+|.|+|++.+.+... +..|.|++++..... + ...+|-+++||-
T Consensus 56 ~S~V~y-H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 56 RSFVLY-HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred EEEEEE-cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 444444 788999999999998765 358999888854221 2 267999999884
No 150
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.64 E-value=1.6 Score=30.71 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=37.9
Q ss_pred EEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC----CCCceeEEEEEeCc
Q 046962 39 RSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV----SQDDFVGEAIIPLH 91 (161)
Q Consensus 39 ~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~----~~d~~iG~~~~~l~ 91 (161)
++.+.. ...+|.|+|++.+.+... +..|.|++++.... .....+|-+++||-
T Consensus 56 ~S~V~Y-h~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 56 KSVIYY-QVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEe-ecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 344443 788999999999998765 45899999885421 12357999999885
No 151
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=91.54 E-value=5.2 Score=30.81 Aligned_cols=97 Identities=10% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCCcEEEEEEcCeeeEEEEeeCCCCCC--eeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCcc-ccccCCcc
Q 046962 24 NMDPYVVLSCRTQEKRSSVASGQGTTP--NWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHS-VFEAGNVP 100 (161)
Q Consensus 24 ~~dp~v~i~~~~~~~~t~~~~~~~~~P--~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~-l~~~~~~~ 100 (161)
....|+.++.++...+|..+. .+..- .-++.....+..-...|.+.+|...-. +..-||.+.+.+.. +....-..
T Consensus 73 ~khiyIef~~Gr~d~TT~~Ip-TsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~dIIdk~FPK 150 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDEIP-TNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINASVISKSFPK 150 (508)
T ss_pred ceeEEEEEEcCceEEEccccc-cCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccHHHHhccCCc
Confidence 356788888877777665443 12121 223444444444346899999988755 45679998888754 55444445
Q ss_pred ceeEEeecCCeeceEEEEEEEE
Q 046962 101 QQAYNVVKDKKFQGEVRVGLTF 122 (161)
Q Consensus 101 ~~~~~l~~~~~~~G~i~l~l~~ 122 (161)
..||.+..++...++|.+|+.-
T Consensus 151 nkWy~c~kDGq~~cRIqLSFhK 172 (508)
T PTZ00447 151 NEWFVCFKDGQEICKVQMSFYK 172 (508)
T ss_pred cceEEEecCCceeeeEEEEehh
Confidence 6899999889999999888763
No 152
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=91.48 E-value=1.2 Score=30.82 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=38.5
Q ss_pred EEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC-----CCCceeEEEEEeCcc
Q 046962 40 SSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV-----SQDDFVGEAIIPLHS 92 (161)
Q Consensus 40 t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~-----~~d~~iG~~~~~l~~ 92 (161)
++++. ...+|.|++++.+.+... ...|.|++++...- .....+|-+.+||-+
T Consensus 56 ~sv~~-~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVY-YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEE-cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444 347999999999988654 34899999986622 345689999999875
No 153
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.28 E-value=3 Score=25.87 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCcEEEEEE--cCeee----EEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEEecC
Q 046962 6 LEVLLVCAKGLQDTDFLSNMDPYVVLSC--RTQEK----RSSVASGQGTTPNWNENFVFTISEG----TTALKLKIMDSD 75 (161)
Q Consensus 6 l~v~i~~a~~L~~~~~~~~~dp~v~i~~--~~~~~----~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~~~~ 75 (161)
+.+.+....++.........+.|+.+.+ +++.. .|. .......+.|||...|++.-. ...|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~-~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTS-YKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEec-ccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4455666666554433223477888765 33322 232 222455689999999886544 248999999864
No 154
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=89.22 E-value=3 Score=28.94 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=36.8
Q ss_pred EEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecCCC------CCCceeEEEEEeCcc
Q 046962 40 SSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSDTV------SQDDFVGEAIIPLHS 92 (161)
Q Consensus 40 t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~~~------~~d~~iG~~~~~l~~ 92 (161)
+.+.. .+.+|.|.+++.+.+... ...|.|++|+.+-- .....+|-+.+||-.
T Consensus 58 S~V~y-Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 58 TAVTY-HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred EEEEE-eCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 44444 788999999999988765 34899999984421 123568888888753
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=88.49 E-value=4.1 Score=28.45 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=37.8
Q ss_pred EEEEeeCCCCCCeeccEEEEEEeCC---CCeEEEEEEecC--CCC-------CCceeEEEEEeCcc
Q 046962 39 RSSVASGQGTTPNWNENFVFTISEG---TTALKLKIMDSD--TVS-------QDDFVGEAIIPLHS 92 (161)
Q Consensus 39 ~t~~~~~~~~~P~w~e~~~~~~~~~---~~~l~i~v~~~~--~~~-------~d~~iG~~~~~l~~ 92 (161)
.+.+.. .+.+|.|.+++.+.+... ...|.|++|+.+ ... .+..+|-+++||-.
T Consensus 59 ~s~V~y-h~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 59 YAAVLH-HNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEE-cCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 344554 778999999999987665 348999999865 111 23568888888765
No 156
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=78.11 E-value=14 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=37.9
Q ss_pred CeEEEEEEecCC---CCCCceeEEEEEeCcccccc----C---------CccceeEEee-cCCeeceEEEEEEEEE
Q 046962 65 TALKLKIMDSDT---VSQDDFVGEAIIPLHSVFEA----G---------NVPQQAYNVV-KDKKFQGEVRVGLTFK 123 (161)
Q Consensus 65 ~~l~i~v~~~~~---~~~d~~iG~~~~~l~~l~~~----~---------~~~~~~~~l~-~~~~~~G~i~l~l~~~ 123 (161)
..|.+.+++-.. .....++|.+.+++.++... . ......|.|. ..++..|.|.+.+.+.
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLS 104 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEe
Confidence 356776665432 34567899999998875421 0 0122457777 4667889999888765
No 157
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=77.63 E-value=6.4 Score=33.94 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCcEEEEEEcCeeeEE-EEeeCCC-CCCeeccEEEEEEeCCCCeEEEEEEecCCCCCCceeEEEEEeCccccccCCccce
Q 046962 25 MDPYVVLSCRTQEKRS-SVASGQG-TTPNWNENFVFTISEGTTALKLKIMDSDTVSQDDFVGEAIIPLHSVFEAGNVPQQ 102 (161)
Q Consensus 25 ~dp~v~i~~~~~~~~t-~~~~~~~-~~P~w~e~~~~~~~~~~~~l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~~~~~~~ 102 (161)
.++|+.+.+.....+. .... .. .+|.|..+|.+........+.+.+-+.+..+....+|.+..+...+..+.. ...
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~-~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~-~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIY-EFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHR-IGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhh-cccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccc-ccc
Confidence 4788888887665543 3333 33 579999888777666666888888888877657899999999999888633 357
Q ss_pred eEEee-cCCee--ce-EEEEEEEEEeCCCC
Q 046962 103 AYNVV-KDKKF--QG-EVRVGLTFKPEGGH 128 (161)
Q Consensus 103 ~~~l~-~~~~~--~G-~i~l~l~~~~~~~~ 128 (161)
|+.+. .+... .| .+.+.+.|.+....
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeechh
Confidence 77766 22222 12 35566777766654
No 158
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=76.05 E-value=18 Score=23.37 Aligned_cols=91 Identities=8% Similarity=0.057 Sum_probs=52.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCe-eccEEEEEEeCC---CCeEEEEEEecCC-C
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPN-WNENFVFTISEG---TTALKLKIMDSDT-V 77 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~-w~e~~~~~~~~~---~~~l~i~v~~~~~-~ 77 (161)
...|.++-+.-.++|..+..+.+.||+.|.-.......+... ...... -...+.+.+... ...+.|.+|+... .
T Consensus 3 ~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 3 PRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKS-YEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp --EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCT-CCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred CeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccc-eeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 445666666677777776667899999998776665311111 111111 112333332221 3588999999873 3
Q ss_pred CCCceeEEEEEeCcccc
Q 046962 78 SQDDFVGEAIIPLHSVF 94 (161)
Q Consensus 78 ~~d~~iG~~~~~l~~l~ 94 (161)
...+.+.++++.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 35667888888766555
No 159
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=67.39 E-value=9.6 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=27.8
Q ss_pred eeEEEEEeCccccccCCccceeEEeec-CCe--eceEEEEEEEEE
Q 046962 82 FVGEAIIPLHSVFEAGNVPQQAYNVVK-DKK--FQGEVRVGLTFK 123 (161)
Q Consensus 82 ~iG~~~~~l~~l~~~~~~~~~~~~l~~-~~~--~~G~i~l~l~~~ 123 (161)
.+|.+.++++.+...+.....||.+.. ... ..|.+ |.+.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 489999999996665555568998873 222 33445 577665
No 160
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=60.17 E-value=52 Score=22.42 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=48.4
Q ss_pred EEEeecCCCCCCCCCCCCcEEEEEEc----------Ce-eeEEEEeeCC----CCCCeeccEEEEEEeCC----CCeEEE
Q 046962 9 LLVCAKGLQDTDFLSNMDPYVVLSCR----------TQ-EKRSSVASGQ----GTTPNWNENFVFTISEG----TTALKL 69 (161)
Q Consensus 9 ~i~~a~~L~~~~~~~~~dp~v~i~~~----------~~-~~~t~~~~~~----~~~P~w~e~~~~~~~~~----~~~l~i 69 (161)
.|..|.+. ...+.||+..+. .. .-.|...... +..-.|+-.|.+.+... ...|.+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 45667765 345668888763 11 2223333211 33467887777765444 248999
Q ss_pred EEEecCCCCCCceeEEEEEeC
Q 046962 70 KIMDSDTVSQDDFVGEAIIPL 90 (161)
Q Consensus 70 ~v~~~~~~~~d~~iG~~~~~l 90 (161)
+||..|..+++.+.|-..+.|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 999999999999988766554
No 161
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=51.13 E-value=72 Score=21.29 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=58.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEcCeeeEEEEeeCCCCCCeeccEEEEEEeCC-------------CCeEEEEE
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQEKRSSVASGQGTTPNWNENFVFTISEG-------------TTALKLKI 71 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-------------~~~l~i~v 71 (161)
.|.|+-+.|-|.--. .+.|.|+.|++.+..++|.-.. ...--.|++.|.|.-... ...+.+++
T Consensus 3 eL~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~p-pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iEL 78 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLP-PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIEL 78 (140)
T ss_pred EEEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCC-CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEE
Confidence 356666666654333 4678999999988888877664 333335578888874332 35788999
Q ss_pred EecCCCCCCceeEEEEEeCcccccc
Q 046962 72 MDSDTVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 72 ~~~~~~~~d~~iG~~~~~l~~l~~~ 96 (161)
+.+.... ...++...-.+.|++..
T Consensus 79 iQl~~~~-g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 79 IQLVPPA-GEILAYYEENTRDFLFP 102 (140)
T ss_pred EEEeCCC-CcEEEEEeccccceEcC
Confidence 9877553 56788877777776653
No 162
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.08 E-value=14 Score=30.96 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=33.7
Q ss_pred eeccEEEEEEeCC----CCeEEEEEEecCCCCCCceeEEEEEeCcc
Q 046962 51 NWNENFVFTISEG----TTALKLKIMDSDTVSQDDFVGEAIIPLHS 92 (161)
Q Consensus 51 ~w~e~~~~~~~~~----~~~l~i~v~~~~~~~~d~~iG~~~~~l~~ 92 (161)
.|||...+++... +..+.|++|+.+...+..|+|...+.+..
T Consensus 78 ~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 78 NWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 4999999887655 34899999998877778899998887654
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=47.19 E-value=11 Score=32.70 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=44.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCCcEEEEEEcCe----ee-EEEEeeCCCCCCeeccEEEEEEeCCCCeEEEEEEecC
Q 046962 3 KGTLEVLLVCAKGLQDTDFLSNMDPYVVLSCRTQ----EK-RSSVASGQGTTPNWNENFVFTISEGTTALKLKIMDSD 75 (161)
Q Consensus 3 ~g~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~~~----~~-~t~~~~~~~~~P~w~e~~~~~~~~~~~~l~i~v~~~~ 75 (161)
.|.+++.+.+|..+.. ....||...+..- .. .+.+++ .+..|.|+++++.++-.. +...+.+++++
T Consensus 758 ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~ia-dT~~~~~npe~hv~~~~s-qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIA-DTAEPQWNPEKHVPVIES-QSSRLEKTEKS 828 (1112)
T ss_pred ccceeeeecccccccc-----ccceeeehhhhhhccccccccceeee-cccCCCCChhcccchhhc-cccchhhhccc
Confidence 4677888888887753 3566887766432 22 345555 899999999998886654 45556666654
No 164
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=45.45 E-value=1.5e+02 Score=26.31 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=39.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCcEEEEEEc----Cee----eEEEEeeCCCCCCeeccEEEEEEeCC----CCeEEEEEE
Q 046962 5 TLEVLLVCAKGLQDTDFLSNMDPYVVLSCR----TQE----KRSSVASGQGTTPNWNENFVFTISEG----TTALKLKIM 72 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~~~~~dp~v~i~~~----~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~l~i~v~ 72 (161)
-++|+++.+.++... ...|-+|.|..+ ... ..|+.+- ...+|.||+...|++.-. ...|.|.||
T Consensus 344 ~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~-~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVP-GCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred ceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCC-CccchhccceeEeeeecCCCChhhhheeeee
Confidence 467777777654322 234455555432 222 2333332 577899999998887543 236788887
Q ss_pred ec
Q 046962 73 DS 74 (161)
Q Consensus 73 ~~ 74 (161)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 165
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=42.87 E-value=1.6e+02 Score=22.88 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=52.9
Q ss_pred EEEEEEEeecCCCCCCC------CCCCCcEEEEEEcCeeeEEEEeeCCCCCCeec-cEEE-EEEeCC----------CCe
Q 046962 5 TLEVLLVCAKGLQDTDF------LSNMDPYVVLSCRTQEKRSSVASGQGTTPNWN-ENFV-FTISEG----------TTA 66 (161)
Q Consensus 5 ~l~v~i~~a~~L~~~~~------~~~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~-e~~~-~~~~~~----------~~~ 66 (161)
.|.|++..|.+|..... .+....|...++-+....+..-. ...+|.|. +... +.+... ...
T Consensus 193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~-~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~ 271 (340)
T PF12416_consen 193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK-SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPK 271 (340)
T ss_pred EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc-ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCC
Confidence 46777788888766521 12345666666666666555554 66677775 3333 554433 124
Q ss_pred EEEEEEecCCCCCCceeEEEEEeCcccccc
Q 046962 67 LKLKIMDSDTVSQDDFVGEAIIPLHSVFEA 96 (161)
Q Consensus 67 l~i~v~~~~~~~~d~~iG~~~~~l~~l~~~ 96 (161)
|.|-++. .+..||.+.+++..+...
T Consensus 272 L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 272 LQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred eEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 5555544 355799999999998754
No 166
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=34.06 E-value=2.5e+02 Score=22.60 Aligned_cols=103 Identities=12% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCeeeEEEEee---CCCCCC-ee-ccEEEEEEeCC--------------CCeEEEEEEecCC-----C-C
Q 046962 24 NMDPYVVLSCRTQEKRSSVAS---GQGTTP-NW-NENFVFTISEG--------------TTALKLKIMDSDT-----V-S 78 (161)
Q Consensus 24 ~~dp~v~i~~~~~~~~t~~~~---~~~~~P-~w-~e~~~~~~~~~--------------~~~l~i~v~~~~~-----~-~ 78 (161)
....||+|.+.+-..+|..+- ....++ .- .-.-.|.++.. ...|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 357799999987665543221 111111 11 11223333221 1369999998332 1 3
Q ss_pred CCceeEEEEEeCccccccCC---ccceeEEeecCC-----eeceEEEEEEEEEeCC
Q 046962 79 QDDFVGEAIIPLHSVFEAGN---VPQQAYNVVKDK-----KFQGEVRVGLTFKPEG 126 (161)
Q Consensus 79 ~d~~iG~~~~~l~~l~~~~~---~~~~~~~l~~~~-----~~~G~i~l~l~~~~~~ 126 (161)
..++||.+.+++..--.... ....|..+-... ....+|||.+...|..
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 56799999999873222211 123465554221 1245777777655443
No 167
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=31.74 E-value=89 Score=18.28 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=19.7
Q ss_pred CeEEEEEEecCCCCCCceeEEEEE
Q 046962 65 TALKLKIMDSDTVSQDDFVGEAII 88 (161)
Q Consensus 65 ~~l~i~v~~~~~~~~d~~iG~~~~ 88 (161)
....|++|+.+.+..|++++.+..
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEE
Confidence 466799999998778999998665
No 168
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.53 E-value=15 Score=30.78 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCCcEEEEEEcCeeeEEEEeeCCCCCCeeccE
Q 046962 24 NMDPYVVLSCRTQEKRSSVASGQGTTPNWNEN 55 (161)
Q Consensus 24 ~~dp~v~i~~~~~~~~t~~~~~~~~~P~w~e~ 55 (161)
..++++...++.+.+++.... .+.+|+|||.
T Consensus 304 ~~~~~~itsf~~~~frt~~~~-~~e~piyNe~ 334 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISD-DTEKPIYNED 334 (975)
T ss_pred CCCchheeecchhhhhhhhhc-cccccccccc
Confidence 578899999999999988887 8999999975
No 169
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=2.9e+02 Score=19.04 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCCCCceeEEEEEeC
Q 046962 65 TALKLKIMDSDTVSQDDFVGEAIIPL 90 (161)
Q Consensus 65 ~~l~i~v~~~~~~~~d~~iG~~~~~l 90 (161)
.+|.+.||..+-.++|-+.|-..+.+
T Consensus 83 Pqivl~vfg~d~~G~d~v~GYg~~hi 108 (187)
T KOG4027|consen 83 PQIVLNVFGKDHSGKDCVTGYGMLHI 108 (187)
T ss_pred ceEEEEEecCCcCCcceeeeeeeEec
Confidence 48999999999999999998766654
Done!