Query 046966
Match_columns 299
No_of_seqs 344 out of 2767
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0415 Predicted peptidyl pro 100.0 1.9E-63 4E-68 424.7 22.9 294 1-294 1-322 (479)
2 KOG0881 Cyclophilin type pepti 100.0 2.5E-50 5.4E-55 296.3 9.6 152 2-155 11-162 (164)
3 KOG0546 HSP90 co-chaperone CPR 100.0 3E-49 6.5E-54 341.5 13.9 150 7-159 20-181 (372)
4 cd01928 Cyclophilin_PPIL3_like 100.0 1.6E-47 3.4E-52 306.6 18.7 153 1-155 1-153 (153)
5 KOG0884 Similar to cyclophilin 100.0 2.7E-47 6E-52 278.6 13.2 155 1-157 1-156 (161)
6 cd01923 cyclophilin_RING cyclo 100.0 2.4E-46 5.1E-51 301.8 19.5 153 3-157 2-154 (159)
7 cd01921 cyclophilin_RRM cyclop 100.0 5.2E-46 1.1E-50 302.2 18.9 154 4-157 1-160 (166)
8 KOG0883 Cyclophilin type, U bo 100.0 5.6E-47 1.2E-51 327.3 12.8 153 3-157 280-432 (518)
9 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.4E-46 2.9E-51 298.2 13.9 148 7-157 51-203 (217)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 5E-46 1.1E-50 293.6 16.6 149 2-156 1-157 (158)
11 cd01927 cyclophilin_WD40 cyclo 100.0 1.6E-45 3.5E-50 293.5 17.4 147 4-152 1-147 (148)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 1.3E-44 2.7E-49 287.5 16.9 145 4-151 1-145 (146)
13 KOG0879 U-snRNP-associated cyc 100.0 1.8E-45 3.9E-50 273.8 10.2 146 7-155 22-176 (177)
14 KOG0882 Cyclophilin-related pe 100.0 3.1E-45 6.8E-50 322.3 12.9 152 2-155 406-557 (558)
15 cd01925 cyclophilin_CeCYP16-li 100.0 8E-44 1.7E-48 290.3 19.1 154 2-157 7-161 (171)
16 PLN03149 peptidyl-prolyl isome 100.0 9.4E-42 2E-46 280.9 16.7 147 7-156 30-186 (186)
17 PRK10903 peptidyl-prolyl cis-t 100.0 2.9E-41 6.2E-46 278.7 18.6 150 2-156 30-189 (190)
18 PTZ00221 cyclophilin; Provisio 100.0 3.2E-41 7E-46 285.7 19.4 151 2-158 54-221 (249)
19 PRK10791 peptidyl-prolyl cis-t 100.0 3.5E-41 7.6E-46 272.3 18.4 149 3-156 2-163 (164)
20 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.7E-42 5.8E-47 297.1 12.5 155 2-158 14-169 (439)
21 cd01926 cyclophilin_ABH_like c 100.0 6.6E-41 1.4E-45 271.8 16.8 144 7-154 12-164 (164)
22 PTZ00060 cyclophilin; Provisio 100.0 1.6E-40 3.6E-45 273.3 17.8 146 7-156 27-182 (183)
23 cd01920 cyclophilin_EcCYP_like 100.0 8E-40 1.7E-44 262.7 16.5 143 5-152 2-154 (155)
24 KOG0111 Cyclophilin-type pepti 100.0 1E-39 2.2E-44 262.9 11.2 147 7-157 148-298 (298)
25 cd00317 cyclophilin cyclophili 100.0 1.4E-38 3E-43 254.5 17.1 146 4-152 1-146 (146)
26 PF00160 Pro_isomerase: Cyclop 100.0 6.7E-38 1.5E-42 253.1 16.7 150 2-155 1-155 (155)
27 cd01924 cyclophilin_TLP40_like 100.0 4.7E-37 1E-41 250.8 16.3 131 6-136 3-165 (176)
28 KOG0865 Cyclophilin type pepti 100.0 1.2E-31 2.6E-36 213.6 7.1 146 7-156 15-167 (167)
29 PLN03134 glycine-rich RNA-bind 99.8 1.4E-17 3E-22 132.0 12.5 85 208-292 31-115 (144)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.1E-16 1.1E-20 141.6 12.5 84 210-293 268-351 (352)
31 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.2E-15 4.8E-20 137.4 11.3 83 210-292 2-84 (352)
32 PF00076 RRM_1: RNA recognitio 99.6 4.9E-15 1.1E-19 102.6 10.2 70 214-284 1-70 (70)
33 KOG0113 U1 small nuclear ribon 99.6 4E-15 8.6E-20 126.0 11.0 91 209-299 99-190 (335)
34 TIGR01659 sex-lethal sex-letha 99.6 3.7E-15 8E-20 134.4 11.1 84 208-291 104-187 (346)
35 KOG0122 Translation initiation 99.6 4.1E-15 9E-20 122.7 9.9 84 208-291 186-269 (270)
36 KOG0149 Predicted RNA-binding 99.5 7.7E-15 1.7E-19 120.7 6.5 78 211-289 12-89 (247)
37 KOG0130 RNA-binding protein RB 99.5 2.1E-14 4.6E-19 108.1 7.2 82 208-289 69-150 (170)
38 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 3E-18 95.5 10.7 70 214-284 1-70 (70)
39 KOG0125 Ataxin 2-binding prote 99.5 3.9E-14 8.5E-19 121.5 9.0 81 209-291 94-174 (376)
40 KOG0145 RNA-binding protein EL 99.5 5E-14 1.1E-18 117.3 9.3 89 208-296 38-126 (360)
41 TIGR01659 sex-lethal sex-letha 99.5 7.6E-14 1.6E-18 125.9 11.1 84 210-293 192-277 (346)
42 TIGR01645 half-pint poly-U bin 99.5 4.8E-14 1E-18 134.2 9.0 82 209-290 105-186 (612)
43 TIGR01645 half-pint poly-U bin 99.5 9.9E-14 2.1E-18 132.0 11.1 81 211-291 204-284 (612)
44 KOG0117 Heterogeneous nuclear 99.5 1.1E-13 2.4E-18 123.1 9.6 88 209-296 81-169 (506)
45 KOG0107 Alternative splicing f 99.5 1.2E-13 2.5E-18 108.7 8.4 81 208-293 7-87 (195)
46 KOG0121 Nuclear cap-binding pr 99.5 1E-13 2.2E-18 103.6 6.8 81 210-290 35-115 (153)
47 PLN03120 nucleic acid binding 99.5 3.3E-13 7.1E-18 114.7 10.0 76 211-290 4-79 (260)
48 KOG4207 Predicted splicing fac 99.5 8.3E-14 1.8E-18 112.3 5.5 81 210-290 12-92 (256)
49 PLN03213 repressor of silencin 99.5 3E-13 6.5E-18 121.7 9.6 79 209-291 8-88 (759)
50 KOG0148 Apoptosis-promoting RN 99.4 1.7E-13 3.7E-18 114.7 7.0 82 211-292 62-143 (321)
51 KOG0111 Cyclophilin-type pepti 99.4 7.2E-14 1.6E-18 113.6 4.4 84 209-292 8-91 (298)
52 TIGR01648 hnRNP-R-Q heterogene 99.4 4.1E-13 8.9E-18 127.6 9.8 86 209-295 56-142 (578)
53 TIGR01628 PABP-1234 polyadenyl 99.4 7.4E-13 1.6E-17 128.2 11.0 78 213-290 2-79 (562)
54 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.1E-12 2.5E-17 125.4 12.1 83 209-291 293-375 (509)
55 TIGR01622 SF-CC1 splicing fact 99.4 1.1E-12 2.3E-17 124.0 11.1 80 210-289 185-264 (457)
56 TIGR01628 PABP-1234 polyadenyl 99.4 8E-13 1.7E-17 127.9 10.5 83 209-292 283-365 (562)
57 KOG0126 Predicted RNA-binding 99.4 5.2E-14 1.1E-18 111.3 1.7 80 210-289 34-113 (219)
58 smart00362 RRM_2 RNA recogniti 99.4 2.9E-12 6.3E-17 88.2 8.9 72 213-286 1-72 (72)
59 KOG0145 RNA-binding protein EL 99.4 3.7E-12 8E-17 106.2 10.5 84 209-292 276-359 (360)
60 PLN03121 nucleic acid binding 99.4 3.9E-12 8.4E-17 106.5 10.1 76 210-289 4-79 (243)
61 TIGR01622 SF-CC1 splicing fact 99.4 3.7E-12 8E-17 120.3 11.4 81 209-290 87-167 (457)
62 KOG0131 Splicing factor 3b, su 99.4 9.3E-13 2E-17 104.4 5.6 82 208-289 6-87 (203)
63 smart00360 RRM RNA recognition 99.3 4.3E-12 9.2E-17 87.0 7.7 71 216-286 1-71 (71)
64 KOG0148 Apoptosis-promoting RN 99.3 5.5E-12 1.2E-16 105.8 9.4 79 207-291 160-238 (321)
65 KOG0146 RNA-binding protein ET 99.3 1.4E-12 3E-17 109.2 5.4 86 207-292 281-366 (371)
66 KOG0108 mRNA cleavage and poly 99.3 3.5E-12 7.5E-17 117.0 7.8 81 212-292 19-99 (435)
67 KOG0127 Nucleolar protein fibr 99.3 7.7E-12 1.7E-16 114.0 9.8 83 210-293 116-198 (678)
68 COG0724 RNA-binding proteins ( 99.3 8.2E-12 1.8E-16 108.8 9.8 79 211-289 115-193 (306)
69 KOG0114 Predicted RNA-binding 99.3 2E-11 4.3E-16 88.0 9.5 80 209-291 16-95 (124)
70 TIGR01648 hnRNP-R-Q heterogene 99.3 1.7E-11 3.7E-16 116.7 11.0 77 209-293 231-309 (578)
71 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.8E-11 3.9E-16 116.1 11.1 79 208-291 272-351 (481)
72 cd00590 RRM RRM (RNA recogniti 99.3 4.2E-11 9.1E-16 82.8 9.9 74 213-287 1-74 (74)
73 KOG0105 Alternative splicing f 99.3 1.2E-11 2.6E-16 98.3 6.6 79 210-291 5-83 (241)
74 KOG0127 Nucleolar protein fibr 99.3 2.6E-11 5.6E-16 110.6 9.6 83 210-292 291-379 (678)
75 KOG0124 Polypyrimidine tract-b 99.3 5.6E-12 1.2E-16 109.7 5.1 79 211-289 113-191 (544)
76 KOG0144 RNA-binding protein CU 99.2 6E-12 1.3E-16 111.8 4.5 83 210-293 123-208 (510)
77 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.6E-11 7.8E-16 114.1 10.0 76 210-291 1-78 (481)
78 smart00361 RRM_1 RNA recogniti 99.2 5.7E-11 1.2E-15 82.3 8.0 62 225-286 2-70 (70)
79 KOG4212 RNA-binding protein hn 99.2 4.5E-11 9.8E-16 106.4 8.8 82 208-290 41-123 (608)
80 KOG0144 RNA-binding protein CU 99.2 2.6E-11 5.7E-16 107.7 6.8 84 210-293 33-119 (510)
81 PF13893 RRM_5: RNA recognitio 99.2 9.4E-11 2E-15 77.5 7.8 56 228-288 1-56 (56)
82 KOG0117 Heterogeneous nuclear 99.2 4.7E-11 1E-15 106.6 7.3 76 210-293 258-333 (506)
83 KOG0147 Transcriptional coacti 99.2 3.7E-11 8E-16 109.9 6.3 79 211-289 278-356 (549)
84 KOG4208 Nucleolar RNA-binding 99.2 1.5E-10 3.2E-15 93.8 9.0 84 208-291 46-130 (214)
85 KOG0109 RNA-binding protein LA 99.2 4.8E-11 1E-15 101.2 5.7 75 212-294 3-77 (346)
86 KOG4206 Spliceosomal protein s 99.2 1.1E-10 2.5E-15 96.0 7.7 86 209-297 7-96 (221)
87 KOG0131 Splicing factor 3b, su 99.1 1.6E-10 3.5E-15 91.8 5.2 83 209-291 94-177 (203)
88 KOG4661 Hsp27-ERE-TATA-binding 99.1 6.2E-10 1.3E-14 102.1 9.0 82 209-290 403-484 (940)
89 KOG0132 RNA polymerase II C-te 99.0 1.3E-09 2.7E-14 103.4 8.6 77 209-291 419-495 (894)
90 KOG0124 Polypyrimidine tract-b 99.0 9.3E-10 2E-14 96.1 6.5 80 211-290 210-289 (544)
91 KOG0146 RNA-binding protein ET 98.9 1.1E-09 2.4E-14 91.9 5.5 84 210-294 18-104 (371)
92 KOG0123 Polyadenylate-binding 98.9 3.1E-09 6.7E-14 96.7 8.5 76 214-292 79-154 (369)
93 KOG4205 RNA-binding protein mu 98.9 1.4E-09 3.1E-14 95.8 4.7 82 210-292 5-86 (311)
94 KOG0110 RNA-binding protein (R 98.9 6.6E-09 1.4E-13 97.9 8.7 79 211-289 515-596 (725)
95 KOG0109 RNA-binding protein LA 98.9 3.3E-09 7.1E-14 90.2 5.7 75 210-292 77-151 (346)
96 KOG0110 RNA-binding protein (R 98.8 6.2E-09 1.3E-13 98.1 4.9 82 211-292 613-694 (725)
97 KOG0123 Polyadenylate-binding 98.8 1.8E-08 4E-13 91.7 7.7 74 212-291 2-75 (369)
98 KOG4205 RNA-binding protein mu 98.8 2.6E-08 5.7E-13 87.9 8.3 83 210-293 96-178 (311)
99 TIGR01642 U2AF_lg U2 snRNP aux 98.8 2.9E-08 6.4E-13 95.0 9.4 82 209-290 407-501 (509)
100 KOG0116 RasGAP SH3 binding pro 98.7 4.4E-08 9.6E-13 89.7 9.5 83 209-292 286-368 (419)
101 KOG0153 Predicted RNA-binding 98.7 4.1E-08 8.9E-13 85.5 7.3 75 210-290 227-302 (377)
102 KOG1457 RNA binding protein (c 98.7 1.4E-07 3E-12 77.5 9.4 87 209-295 32-122 (284)
103 KOG0533 RRM motif-containing p 98.7 9.5E-08 2.1E-12 81.2 8.3 83 209-292 81-163 (243)
104 KOG4212 RNA-binding protein hn 98.7 5.2E-08 1.1E-12 87.2 6.7 75 209-288 534-608 (608)
105 KOG0226 RNA-binding proteins [ 98.6 2.1E-08 4.6E-13 83.8 3.6 86 205-290 184-269 (290)
106 KOG1548 Transcription elongati 98.6 1.9E-07 4.2E-12 81.3 8.8 80 210-290 133-220 (382)
107 KOG4209 Splicing factor RNPS1, 98.5 2.4E-07 5.2E-12 78.8 6.9 83 208-291 98-180 (231)
108 KOG0151 Predicted splicing reg 98.5 3.1E-07 6.6E-12 86.8 6.5 83 209-291 172-257 (877)
109 PF04059 RRM_2: RNA recognitio 98.4 3.1E-06 6.7E-11 61.8 8.9 79 212-290 2-86 (97)
110 KOG4454 RNA binding protein (R 98.3 1.9E-07 4E-12 76.6 2.0 82 208-291 6-87 (267)
111 KOG0106 Alternative splicing f 98.3 7.1E-07 1.5E-11 74.3 3.9 72 212-291 2-73 (216)
112 KOG4660 Protein Mei2, essentia 98.2 6.2E-07 1.3E-11 82.8 3.2 70 210-284 74-143 (549)
113 KOG0120 Splicing factor U2AF, 98.1 3.1E-06 6.8E-11 78.7 4.0 86 208-293 286-371 (500)
114 KOG1190 Polypyrimidine tract-b 98.0 2.6E-05 5.7E-10 69.7 8.5 76 211-291 297-373 (492)
115 KOG0882 Cyclophilin-related pe 98.0 6.8E-06 1.5E-10 74.4 4.8 153 3-157 101-263 (558)
116 KOG0147 Transcriptional coacti 97.9 5.5E-06 1.2E-10 76.5 1.6 80 210-290 178-257 (549)
117 KOG4211 Splicing factor hnRNP- 97.9 6.1E-05 1.3E-09 69.0 8.2 79 209-291 8-86 (510)
118 PF11608 Limkain-b1: Limkain b 97.8 5.9E-05 1.3E-09 52.8 5.9 68 212-289 3-75 (90)
119 KOG1457 RNA binding protein (c 97.8 2E-05 4.3E-10 65.1 3.6 65 211-279 210-274 (284)
120 KOG4210 Nuclear localization s 97.8 1.9E-05 4.2E-10 69.5 3.4 84 209-293 182-266 (285)
121 COG5175 MOT2 Transcriptional r 97.7 0.00015 3.3E-09 63.4 7.6 82 210-291 113-203 (480)
122 KOG4849 mRNA cleavage factor I 97.7 3.6E-05 7.8E-10 67.5 3.6 78 209-286 78-157 (498)
123 KOG1995 Conserved Zn-finger pr 97.7 5E-05 1.1E-09 67.0 4.5 85 208-292 63-155 (351)
124 KOG4206 Spliceosomal protein s 97.6 0.00028 6.1E-09 58.6 7.6 78 207-289 142-220 (221)
125 KOG3152 TBP-binding protein, a 97.6 6.7E-05 1.5E-09 63.2 3.9 73 210-282 73-157 (278)
126 KOG4211 Splicing factor hnRNP- 97.6 0.0002 4.3E-09 65.7 6.7 79 209-289 101-180 (510)
127 PF08777 RRM_3: RNA binding mo 97.4 0.00046 1E-08 51.5 6.3 70 212-287 2-76 (105)
128 KOG1190 Polypyrimidine tract-b 97.4 0.00032 6.8E-09 63.0 6.1 80 208-291 411-491 (492)
129 KOG0106 Alternative splicing f 97.4 0.0001 2.2E-09 61.6 2.6 71 210-288 98-168 (216)
130 KOG1548 Transcription elongati 97.3 0.0026 5.6E-08 56.1 9.9 81 209-293 263-354 (382)
131 KOG2314 Translation initiation 97.3 0.00065 1.4E-08 63.3 6.5 78 209-287 56-140 (698)
132 KOG1456 Heterogeneous nuclear 97.2 0.0036 7.9E-08 55.7 9.6 81 207-292 116-200 (494)
133 KOG0129 Predicted RNA-binding 97.0 0.0024 5.2E-08 59.1 7.4 65 208-272 367-432 (520)
134 KOG1456 Heterogeneous nuclear 96.9 0.008 1.7E-07 53.6 9.3 79 207-290 283-362 (494)
135 KOG0105 Alternative splicing f 96.8 0.0045 9.8E-08 50.0 6.6 64 209-279 113-176 (241)
136 PF08952 DUF1866: Domain of un 96.8 0.0086 1.9E-07 46.9 8.0 74 208-290 24-106 (146)
137 KOG0120 Splicing factor U2AF, 96.7 0.005 1.1E-07 57.8 7.3 66 226-291 424-492 (500)
138 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0044 9.6E-08 40.0 4.8 52 212-270 2-53 (53)
139 TIGR03268 methan_mark_3 putati 96.6 0.0094 2E-07 55.4 8.4 99 11-136 202-304 (503)
140 PRK00969 hypothetical protein; 96.5 0.01 2.3E-07 55.3 8.0 99 11-136 205-307 (508)
141 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.017 3.6E-07 42.6 7.2 79 211-291 6-92 (100)
142 PRK00969 hypothetical protein; 96.5 0.03 6.5E-07 52.3 10.5 116 2-136 52-168 (508)
143 KOG0129 Predicted RNA-binding 96.4 0.018 3.9E-07 53.5 8.5 66 208-274 256-327 (520)
144 KOG2193 IGF-II mRNA-binding pr 96.4 0.0026 5.5E-08 57.5 2.9 77 212-294 2-79 (584)
145 KOG4307 RNA binding protein RB 96.3 0.013 2.7E-07 56.4 7.4 75 212-287 868-943 (944)
146 KOG1365 RNA-binding protein Fu 96.2 0.0059 1.3E-07 54.6 4.4 79 210-289 279-360 (508)
147 TIGR03268 methan_mark_3 putati 96.2 0.06 1.3E-06 50.2 11.0 116 2-136 48-165 (503)
148 KOG0112 Large RNA-binding prot 96.1 0.0065 1.4E-07 59.8 4.2 77 209-291 453-531 (975)
149 KOG1855 Predicted RNA-binding 96.0 0.0074 1.6E-07 54.8 3.7 68 209-276 229-309 (484)
150 KOG0128 RNA-binding protein SA 95.8 0.0038 8.2E-08 61.1 1.4 80 211-291 736-815 (881)
151 KOG1996 mRNA splicing factor [ 95.8 0.027 5.9E-07 48.7 6.3 65 225-289 300-365 (378)
152 KOG2202 U2 snRNP splicing fact 95.4 0.0059 1.3E-07 51.8 1.1 62 227-289 84-146 (260)
153 COG4070 Predicted peptidyl-pro 95.2 0.059 1.3E-06 48.6 6.4 99 11-136 204-306 (512)
154 KOG2416 Acinus (induces apopto 95.2 0.03 6.5E-07 52.9 4.8 82 203-290 436-521 (718)
155 KOG2068 MOT2 transcription fac 95.1 0.012 2.5E-07 52.0 1.9 81 211-291 77-163 (327)
156 PF08675 RNA_bind: RNA binding 95.1 0.18 3.8E-06 35.6 7.3 57 210-275 8-64 (87)
157 KOG0128 RNA-binding protein SA 94.9 0.0019 4E-08 63.2 -4.0 68 212-279 668-735 (881)
158 KOG4676 Splicing factor, argin 94.5 0.062 1.3E-06 48.4 4.9 75 211-286 7-84 (479)
159 KOG1365 RNA-binding protein Fu 94.5 0.047 1E-06 49.0 4.1 70 212-283 162-235 (508)
160 PF10309 DUF2414: Protein of u 94.5 0.22 4.8E-06 33.1 6.3 55 211-273 5-62 (62)
161 PF12903 DUF3830: Protein of u 94.4 0.34 7.3E-06 38.1 8.2 116 5-136 3-131 (147)
162 KOG4307 RNA binding protein RB 94.0 0.041 8.9E-07 53.0 2.7 80 208-288 431-511 (944)
163 KOG0115 RNA-binding protein p5 94.0 0.073 1.6E-06 45.3 3.9 62 212-274 32-93 (275)
164 KOG0112 Large RNA-binding prot 93.9 0.015 3.3E-07 57.4 -0.2 82 206-288 367-448 (975)
165 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.31 6.8E-06 39.9 6.5 81 210-290 6-97 (176)
166 PF07576 BRAP2: BRCA1-associat 92.4 2.1 4.5E-05 32.1 9.4 65 213-279 15-80 (110)
167 PF15023 DUF4523: Protein of u 91.7 0.84 1.8E-05 35.6 6.6 73 208-288 83-159 (166)
168 KOG4210 Nuclear localization s 91.5 0.22 4.8E-06 44.1 3.8 82 209-290 86-167 (285)
169 KOG4660 Protein Mei2, essentia 90.2 0.47 1E-05 44.8 4.8 61 235-295 413-477 (549)
170 PF03880 DbpA: DbpA RNA bindin 89.8 1 2.3E-05 31.0 5.3 58 222-288 12-74 (74)
171 KOG2253 U1 snRNP complex, subu 89.6 0.22 4.8E-06 47.9 2.2 74 205-287 34-107 (668)
172 PF04847 Calcipressin: Calcipr 89.3 0.95 2E-05 37.3 5.5 62 224-291 8-71 (184)
173 PF11767 SET_assoc: Histone ly 89.3 1.7 3.7E-05 29.3 5.7 55 222-285 11-65 (66)
174 COG4070 Predicted peptidyl-pro 87.4 6.1 0.00013 36.1 9.6 116 3-137 53-168 (512)
175 PF04126 Cyclophil_like: Cyclo 86.6 4.2 9.1E-05 31.0 7.2 102 1-136 1-114 (120)
176 KOG4574 RNA-binding protein (c 85.5 0.57 1.2E-05 46.5 2.4 75 211-291 298-374 (1007)
177 KOG2135 Proteins containing th 85.4 0.51 1.1E-05 43.8 1.9 68 216-290 377-445 (526)
178 KOG4285 Mitotic phosphoprotein 83.4 6.2 0.00014 34.7 7.5 69 214-290 200-269 (350)
179 KOG4410 5-formyltetrahydrofola 79.7 6.8 0.00015 34.2 6.4 48 210-263 329-377 (396)
180 KOG0804 Cytoplasmic Zn-finger 78.8 9.4 0.0002 35.5 7.4 68 211-280 74-142 (493)
181 KOG2591 c-Mpl binding protein, 77.9 3.8 8.2E-05 39.0 4.7 70 211-287 175-248 (684)
182 KOG2318 Uncharacterized conser 63.3 1.1E+02 0.0025 29.6 10.9 80 208-287 171-304 (650)
183 KOG2193 IGF-II mRNA-binding pr 52.2 0.69 1.5E-05 42.3 -5.2 73 211-287 80-153 (584)
184 KOG4483 Uncharacterized conser 51.2 54 0.0012 30.3 6.4 56 210-272 390-446 (528)
185 KOG4676 Splicing factor, argin 43.8 2.8 6E-05 38.2 -2.7 76 211-291 151-226 (479)
186 PF07530 PRE_C2HC: Associated 40.4 48 0.001 22.4 3.5 62 226-290 2-64 (68)
187 smart00596 PRE_C2HC PRE_C2HC d 39.4 42 0.0009 22.8 3.0 61 226-289 2-63 (69)
188 PF06138 Chordopox_E11: Chordo 38.6 1.1E+02 0.0023 23.6 5.3 47 2-48 5-61 (130)
189 PF03468 XS: XS domain; Inter 37.4 57 0.0012 24.7 3.9 56 212-270 9-74 (116)
190 COG0724 RNA-binding proteins ( 35.2 43 0.00093 28.1 3.4 64 208-271 222-285 (306)
191 KOG4454 RNA binding protein (R 34.4 11 0.00025 31.7 -0.3 65 212-277 81-149 (267)
192 PHA03001 putative virion core 29.8 1.7E+02 0.0038 22.4 5.3 47 2-48 5-60 (132)
193 COG5638 Uncharacterized conser 29.0 1.6E+02 0.0035 27.4 5.9 36 208-243 143-183 (622)
194 KOG2891 Surface glycoprotein [ 26.7 54 0.0012 28.7 2.4 81 211-291 149-268 (445)
195 PF05913 DUF871: Bacterial pro 26.0 41 0.00088 30.9 1.7 51 83-135 298-349 (357)
196 PF07292 NID: Nmi/IFP 35 domai 25.3 55 0.0012 23.4 1.9 25 209-233 50-74 (88)
197 PF11314 DUF3117: Protein of u 22.6 25 0.00053 21.9 -0.3 14 10-23 29-42 (51)
198 PF10567 Nab6_mRNP_bdg: RNA-re 21.6 2.4E+02 0.0053 25.0 5.4 81 209-289 13-106 (309)
199 PF08415 NRPS: Nonribosomal pe 21.5 91 0.002 20.0 2.3 28 124-153 4-31 (58)
200 PF15513 DUF4651: Domain of un 21.5 2.1E+02 0.0045 19.0 3.8 18 226-243 9-26 (62)
201 KOG2295 C2H2 Zn-finger protein 21.3 15 0.00033 35.2 -2.1 74 210-283 230-303 (648)
No 1
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-63 Score=424.68 Aligned_cols=294 Identities=63% Similarity=1.009 Sum_probs=269.7
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCC------Cccccc
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYE------DRFFVD 74 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~------~~~~~~ 74 (299)
|+|+|+|++|+|+|.||.+++|.+|.|||+||+-.||+.|.||-|..+|++|.||++++|.||.++|+ ..||..
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999984 357899
Q ss_pred ccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEE
Q 046966 75 EIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTY 154 (299)
Q Consensus 75 e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~ 154 (299)
|+.+.++|.+.|+|||++.|.|.+||||||||++++.+||++|+|||+|++||++|.+|+..-++.+++|.++|.|+.+.
T Consensus 81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI 160 (479)
T ss_pred hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC-CCCC-----CCCCCCCCCCCC--CCC--CCC------------ccccchhHHhhhhhhhccccCCCCCCCCCCCCc
Q 046966 155 VLY-PPEL-----ADDSIPEGEPKD--ELE--PPL------------NEQLSSEKEAHSRAVALECIGDIPDADVKPPDN 212 (299)
Q Consensus 155 v~~-p~~~-----~p~~~p~~~~~~--~~~--~~~------------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (299)
|++ |.+- .|.-+|+|.++. ..+ ..+ -+++.+|++++..|...+.+++.|+++..||..
T Consensus 161 iLdDPFddpp~l~~p~rspsPt~e~l~~g~i~~de~~d~~~g~saeel~e~~~e~ea~~~A~iLEmvGDlpdAd~~PPeN 240 (479)
T KOG0415|consen 161 ILDDPFDDPPDLAEPMRSPSPTPEQLVKGRIRLDEDEDDDEGLSAEELEEVLAEKEAKAQAVILEMVGDLPDADVKPPEN 240 (479)
T ss_pred EecCCCCCchhhccCCCCCCCCHHHhhccccccCcccccccccCHHHHHHHHHHHHHHhhHhHHHHhcCCcccccCCCcc
Confidence 997 3322 444555555443 212 111 123567888899999999999999999999999
Q ss_pred eEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCcc
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSVS 292 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~~ 292 (299)
.|||..|.+.++.++|.-+|+.||.|.+|.+++|..||.+..||||+|.+.+++++|.-.|++..|.+++|+|.|+.+.+
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred eEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 046966 293 KI 294 (299)
Q Consensus 293 ~~ 294 (299)
+.
T Consensus 321 k~ 322 (479)
T KOG0415|consen 321 KV 322 (479)
T ss_pred hh
Confidence 63
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-50 Score=296.31 Aligned_cols=152 Identities=47% Similarity=0.852 Sum_probs=147.4
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
-|+++|+.|.|++|||-+.||+||.||.+|++.|||+|+.||||+++|+|||||++++|.||.|||+.+ |.||.+.+|+
T Consensus 11 ~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~k-F~DEi~~dLk 89 (164)
T KOG0881|consen 11 NVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDK-FEDEIHSDLK 89 (164)
T ss_pred eEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccch-hhhhhhhhhc
Confidence 389999999999999999999999999999999999999999999999999999999999999999988 5999999999
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
|..+|.|+|||.|||+|+|||||||.+ .+|||++|++||||..||+|+.++....++..++|..+++|.+..+
T Consensus 90 hTGAGILsMANaGPnTNgSQFFiTLAP-t~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 90 HTGAGILSMANAGPNTNGSQFFITLAP-TQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred ccchhhhhhhccCCCCCCceEEEEecC-ccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 999999999999999999999999999 7999999999999999999999999999999999999999988754
No 3
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-49 Score=341.48 Aligned_cols=150 Identities=39% Similarity=0.667 Sum_probs=142.3
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCC-----------CcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNK-----------YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVD 74 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~-----------~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~ 74 (299)
-+.|||+||||.|.||+||+||+.||+|. .|+|+.||||+++|||||||++ ++|+||.|||++. |+|
T Consensus 20 e~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~-FdD 98 (372)
T KOG0546|consen 20 EPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEK-FDD 98 (372)
T ss_pred cccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccc-ccc
Confidence 56799999999999999999999999763 4999999999999999999965 6799999999987 699
Q ss_pred ccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEE
Q 046966 75 EIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTY 154 (299)
Q Consensus 75 e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~ 154 (299)
| ++.++|+++++|||||.|||+||||||||+.+ +|||||+|+|||+||.|++||+.|+.+.++..++|..+|.|.+||
T Consensus 99 E-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p-~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCG 176 (372)
T KOG0546|consen 99 E-NFELKHDRPFLLSMANRGPNTNGSQFFITTVP-TPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCG 176 (372)
T ss_pred c-cceeccCcchhhhhhcCCCCCCCcceEEeCCC-CCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecccc
Confidence 9 89999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred EECCC
Q 046966 155 VLYPP 159 (299)
Q Consensus 155 v~~p~ 159 (299)
++...
T Consensus 177 el~~~ 181 (372)
T KOG0546|consen 177 ELVKK 181 (372)
T ss_pred ccccc
Confidence 99854
No 4
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.6e-47 Score=306.56 Aligned_cols=153 Identities=50% Similarity=0.876 Sum_probs=144.7
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
|||+|+|+.|+|+||||++.||+||+||++||++++|+|+.|||++++|++||||+.+++.++.++|+.. +++|....+
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~-~~~e~~~~~ 79 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKK-FEDEFRETL 79 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCc-cccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999988888888888754 688877778
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
+|+++|+|+|++.++++++|||||++++ .++||++|+|||+|++||+||++|++.+++++++|..+|+|.+|.+
T Consensus 80 ~~~~~G~v~ma~~~~~~~~SqFfI~~~~-~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 80 KHDSRGVVSMANNGPNTNGSQFFITYAK-QPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred CcCCCcEEEEeeCCCCCcccEEEEEeCC-CcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 9999999999999999999999999998 6999999999999999999999999999999999999999999853
No 5
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-47 Score=278.62 Aligned_cols=155 Identities=45% Similarity=0.776 Sum_probs=149.9
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
|||+++|+.|+|.||||++.+|++|+||+.||...||++|.|||-+++|++|+||++..|.||.+||+++ |+||+...|
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~-fede~~~~l 79 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKK-FEDEYSEYL 79 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCc-chHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999987 699999999
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCC-CCCceeEEEEEEEEEC
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEE-NRPPQQIIIKQTYVLY 157 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~p~~~v~I~~~~v~~ 157 (299)
+|+.||+||||+.|||+|+||||||.+. .+|||-+|++||+||+|+++|+.|+..++++. -+|+.++.|.++.|..
T Consensus 80 kh~~rg~vsmanngp~tn~sqffity~k-q~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itiha 156 (161)
T KOG0884|consen 80 KHNVRGVVSMANNGPNTNGSQFFITYGK-QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_pred hhccceeEEcccCCCCCCCceEEEEecC-CCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEec
Confidence 9999999999999999999999999998 59999999999999999999999999999876 6999999999999865
No 6
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=2.4e-46 Score=301.84 Aligned_cols=153 Identities=42% Similarity=0.778 Sum_probs=145.8
Q ss_pred EEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCC
Q 046966 3 VLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 3 v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+|+|+.|+|+||||++.||+||+||++||+.++|+|+.||||+|++++||||+.+++.++.++|+.. +++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~-~~~E~~~~~~h 80 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKP-FKDEFKPNLSH 80 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCc-cCcccccCcCc
Confidence 78999999999999999999999999999999999999999999999999999998888888888755 68887778899
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+++|+|+|++.++++++|||||++++ .++||++|+|||+|++||++|++|++.+++++++|+.+|+|.+|+|+.
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~-~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRS-CKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 99999999999999999999999998 799999999999999999999999999998899999999999999987
No 7
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=5.2e-46 Score=302.16 Aligned_cols=154 Identities=62% Similarity=1.029 Sum_probs=143.3
Q ss_pred EEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCC------cccccccc
Q 046966 4 LIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYED------RFFVDEIR 77 (299)
Q Consensus 4 ~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~------~~~~~e~~ 77 (299)
+|+|+.|+|+||||++.||+||+||++||+.++|+|+.||||+++++|||||+..++.++.++++. .++.+|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 479999999999999999999999999999999999999999999999999998888888777642 34677767
Q ss_pred cCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 78 ADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 78 ~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
..++|+.+|+|+||+.++++++|||||++.+++++||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|+|+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 78899999999999999999999999999865799999999999999999999999999999999999999999999997
No 8
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-47 Score=327.26 Aligned_cols=153 Identities=44% Similarity=0.777 Sum_probs=149.7
Q ss_pred EEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCC
Q 046966 3 VLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 3 v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|.|.|+.|.|.|||++|.+|++|+||+.||+.|||+|+.|||.+.+|||||||++++|.||.|||+.+ |.||+.+.+.|
T Consensus 280 vrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKp-FkDEf~~~l~H 358 (518)
T KOG0883|consen 280 VRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKP-FKDEFCSNLSH 358 (518)
T ss_pred EEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCc-cccccCCCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999976 69999999999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+.||+|||||+|||+|||||||+..+ +.|||++|++||+||.|+++|.+|+++++++.++|+.+|+|.++.|..
T Consensus 359 ~gRGvlSMANsGpnTNgSQFFItyrs-ckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFV 432 (518)
T KOG0883|consen 359 DGRGVLSMANSGPNTNGSQFFITYRS-CKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFV 432 (518)
T ss_pred CCcceEeeccCCCCCCCceEEEEecc-hhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEee
Confidence 99999999999999999999999998 899999999999999999999999999999999999999999999975
No 9
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-46 Score=298.18 Aligned_cols=148 Identities=40% Similarity=0.692 Sum_probs=139.9
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCC----CcCCceeeEeecCcEEEecCCCC-CCCCCCCCCCCcccccccccCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNK----YYNGCLFHNIHKDFIAQTGDPTG-TGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~----~y~~~~f~ri~~~~~iq~G~~~~-~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
-+.|||+|+||+..+|+||+||.+||.++ .|.|++||||+|+|||||||.+. +|.||.++|+.+ |+|| ++.|+
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~-F~DE-Nf~Lk 128 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEK-FPDE-NFKLK 128 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCC-CCCc-cceee
Confidence 56799999999999999999999999843 49999999999999999999775 599999999988 5999 79999
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
|+++|.||||+.|||+||||||||+.. ++||||+|+|||+|++||++|.+|+..+++++++|.++++|.+|+-+.
T Consensus 129 H~rpG~lSMAn~GpDtNGsQFfItT~~-t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 129 HDRPGRLSMANAGPDTNGSQFFITTVK-TPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred cCCCceEeeeccCCCCCCceEEEEecC-CccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence 999999999999999999999999997 799999999999999999999999999999999999999999999765
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-46 Score=293.64 Aligned_cols=149 Identities=43% Similarity=0.745 Sum_probs=132.0
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCC-CCCCCCCCCCcccccccccCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGT-GTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~-~~~~~~~~~~~~~~~e~~~~~ 80 (299)
+|+++|++|+|+||||++.||+||+||++||+.++|+|+.||||+++|||||||+.+. +.+|.+ ..+++|+.. .
T Consensus 1 ~v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~----~~f~~E~~~-~ 75 (158)
T COG0652 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG----PPFKDENFA-L 75 (158)
T ss_pred CceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCCC----CCCcccccc-c
Confidence 4789999999999999999999999999999999999999999999999999999887 777766 447888443 3
Q ss_pred CCCC--ceEEEEEcCC-CCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCC----CCCceeEEEEEE
Q 046966 81 KHDK--VGTVGMASAG-RDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEE----NRPPQQIIIKQT 153 (299)
Q Consensus 81 ~~~~--~G~l~~~~~~-~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~----~~p~~~v~I~~~ 153 (299)
.|++ +|+|||||.+ ||+++|||||++.+ .+|||++|+|||+|++||++|++|++..+... +.|..+++|...
T Consensus 76 ~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~-~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~ 154 (158)
T COG0652 76 NGDRHKRGTLSMARAGDPNSNGSQFFITVVD-NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSV 154 (158)
T ss_pred ccccCCcceEeEcccCCcCCccCeEEEEecC-CcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeee
Confidence 4445 9999999999 99999999999998 69999999999999999999999999888754 356678888887
Q ss_pred EEE
Q 046966 154 YVL 156 (299)
Q Consensus 154 ~v~ 156 (299)
.++
T Consensus 155 ~~~ 157 (158)
T COG0652 155 KIV 157 (158)
T ss_pred eee
Confidence 664
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.6e-45 Score=293.49 Aligned_cols=147 Identities=46% Similarity=0.808 Sum_probs=138.9
Q ss_pred EEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCC
Q 046966 4 LIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHD 83 (299)
Q Consensus 4 ~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 83 (299)
+|+|+.|+|+||||.+.||++|+||++||+.++|+++.||||+|+|++||||+.+++.++.++|+.. +++|..+.++|+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~-~~~e~~~~~~h~ 79 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKE-FEDEFSPSLKHD 79 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCc-cccccccccCcC
Confidence 4899999999999999999999999999999999999999999999999999988888888888754 688877789999
Q ss_pred CceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEE
Q 046966 84 KVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQ 152 (299)
Q Consensus 84 ~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~ 152 (299)
++|+|+|++.++++++|||||++.+ +++||++|+|||+|++||+||++|++.+++++++|..+|+|.+
T Consensus 80 ~~G~l~ma~~~~~s~~SqFfIt~~~-~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 80 RPYTLSMANAGPNTNGSQFFITTVA-TPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CCeEEEEeeCCCCCCCceEEEEcCC-CcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 9999999999999999999999998 7999999999999999999999999999998999999999986
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.3e-44 Score=287.52 Aligned_cols=145 Identities=43% Similarity=0.824 Sum_probs=136.5
Q ss_pred EEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCC
Q 046966 4 LIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHD 83 (299)
Q Consensus 4 ~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 83 (299)
+|+|+.|+|+||||.+.||++|+||++||+.++|+++.|||++|+|++||||+.+++.++.++|+.. +++|....++|+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~-~~~e~~~~~~h~ 79 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKK-FEDEIHPELKHT 79 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCC-cccccccCcCCC
Confidence 4799999999999999999999999999999999999999999999999999988888888888754 688877889999
Q ss_pred CceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEE
Q 046966 84 KVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIK 151 (299)
Q Consensus 84 ~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~ 151 (299)
++|+|+|++.++++++|||||++++ .++||++|+|||+|++||+||++|++.+++ +++|..+|+|.
T Consensus 80 ~~G~l~ma~~~~~s~~sqFfIt~~~-~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 80 GAGILSMANAGPNTNGSQFFITLAP-TPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred CCeEEEEeeCCCCCCccEEEEEcCC-CcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 9999999999999999999999998 699999999999999999999999999998 88999999986
No 13
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-45 Score=273.84 Aligned_cols=146 Identities=40% Similarity=0.716 Sum_probs=139.2
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCCC--------cCCceeeEeecCcEEEecCC-CCCCCCCCCCCCCcccccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNKY--------YNGCLFHNIHKDFIAQTGDP-TGTGTGGRSVYEDRFFVDEIR 77 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~--------y~~~~f~ri~~~~~iq~G~~-~~~~~~~~~~~~~~~~~~e~~ 77 (299)
++.|||.||||++.+|+|++||+++|++.+ |+++.|||++++|||||||. .++|+|..+||+.. |+|| +
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~-F~DE-N 99 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGST-FPDE-N 99 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCC-CCCc-c
Confidence 678999999999999999999999999865 99999999999999999995 56799999999986 6999 7
Q ss_pred cCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 78 ADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 78 ~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
+.++|+.+|+||||++|+++||.|||||... +.|||++|+|||+|++|+.++++|+..++..+++|+.+|.|..|+.
T Consensus 100 FtlkH~~PGlLSMANsG~~tNGCQFFITcak-cdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGe 176 (177)
T KOG0879|consen 100 FTLKHDGPGLLSMANSGKDTNGCQFFITCAK-CDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGE 176 (177)
T ss_pred eeeecCCCceeeccccCCCCCCceEEEEecc-cccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeeccc
Confidence 8999999999999999999999999999997 9999999999999999999999999999999999999999999974
No 14
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=322.30 Aligned_cols=152 Identities=44% Similarity=0.780 Sum_probs=148.3
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
.++|||+.|+|.|.||+++||+||+||-..|++|||+|..||||++|||||+||+.++|+||.|||++. |+||+++.|+
T Consensus 406 ~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~d-fedefh~~lr 484 (558)
T KOG0882|consen 406 AAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKD-FEDEFHPNLR 484 (558)
T ss_pred ceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCccccccc-chhhcCcccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999987 6999999999
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
|+++-+|||||.|||+||||||||+-+ +||||++|+|||||+.||+|+++|+++.++.+++|.+++.|.++.|
T Consensus 485 hdrpft~smanag~ntngsqffit~~~-tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 485 HDRPFTVSMANAGPNTNGSQFFITTVP-TPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred cCCCceEEecccCCCCCCceEEEEecC-ccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 999999999999999999999999998 7999999999999999999999999999999999999999999876
No 15
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8e-44 Score=290.27 Aligned_cols=154 Identities=41% Similarity=0.737 Sum_probs=145.5
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
+|+|+|++|+|+||||++.||+||+||++||+.++|+|+.|||++|+|++||||+.++|.++.++|+.. +++|....++
T Consensus 7 ~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~-~~~E~~~~~~ 85 (171)
T cd01925 7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEP-FKDEFHSRLR 85 (171)
T ss_pred EEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCc-cCcccccCcC
Confidence 689999999999999999999999999999999999999999999999999999998899999988755 6888777888
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeec-CHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAE-GLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
|+++|+|+|++.++++++|||||++++ .++||++|+|||+|++ ++++|++|++.+++++++|..+|.|.+|+|+.
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqFfIt~~~-~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQFFFTLDK-ADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred CCCCcEEEECcCCCCCcccEEEEEcCC-CcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 999999999999999999999999998 7999999999999994 68899999999999999999999999999987
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=9.4e-42 Score=280.88 Aligned_cols=147 Identities=38% Similarity=0.698 Sum_probs=134.0
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCCC--------cCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNKY--------YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIR 77 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~--------y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~ 77 (299)
++.|+|+||||.+.||+||+||++||++.+ |+++.||||+++++|||||+. +++.++.++|+.. +++| .
T Consensus 30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~-f~~e-~ 107 (186)
T PLN03149 30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSK-FEDE-N 107 (186)
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCc-cCCc-c
Confidence 367999999999999999999999998654 999999999999999999964 6688888888765 5667 3
Q ss_pred cCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEee-cCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 78 ADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVA-EGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 78 ~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
..++|+++|+|+|++.++++++|||||++.+ +++||++|+|||+|+ +||+||++|++.+++.+++|..+|+|.+|+++
T Consensus 108 ~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~-~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 108 FIAKHTGPGLLSMANSGPNTNGCQFFITCAK-CDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccccCCCCEEEEeeCCCCCcccEEEEECCC-CCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 5678989999999999999999999999998 799999999999999 79999999999999999999999999999974
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.9e-41 Score=278.69 Aligned_cols=150 Identities=29% Similarity=0.502 Sum_probs=130.0
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
+|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.|||++|+|++|||++.....+. .++ ..+.+|....+
T Consensus 30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~~--~~~-~~~~~e~~~~l- 105 (190)
T PRK10903 30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK--KPN-PPIKNEADNGL- 105 (190)
T ss_pred EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCCC--CCC-CcccCcccccC-
Confidence 68999999999999999999999999999999999999999999999999999976542211 122 23567754444
Q ss_pred CCCceEEEEEcCC-CCCCcceEEEEecCCCCCCCC-----CceEEEEeecCHHHHHHHHhcccCC----CCCCceeEEEE
Q 046966 82 HDKVGTVGMASAG-RDLNASQFYITLRDNLHYLDE-----KHTIFGEVAEGLETLTRINQAVVDE----ENRPPQQIIIK 151 (299)
Q Consensus 82 ~~~~G~l~~~~~~-~~~~~s~FfI~~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~v~I~ 151 (299)
|+.+|+|+||+.+ +++++|||||++.+ .++||+ +|+|||+|++||+||++|++.+++. +++|..+|+|.
T Consensus 106 ~~~~G~lama~~~~~~sn~SQFfIt~~~-~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 184 (190)
T PRK10903 106 RNTRGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 184 (190)
T ss_pred cCCCcEEEeCCCCCCCCcccEEEEECcC-cccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEE
Confidence 4589999999865 89999999999998 588884 8999999999999999999999976 57999999999
Q ss_pred EEEEE
Q 046966 152 QTYVL 156 (299)
Q Consensus 152 ~~~v~ 156 (299)
+|+|+
T Consensus 185 ~~~v~ 189 (190)
T PRK10903 185 SAKVL 189 (190)
T ss_pred EEEEe
Confidence 99885
No 18
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=3.2e-41 Score=285.67 Aligned_cols=151 Identities=25% Similarity=0.339 Sum_probs=134.1
Q ss_pred EEEEEEc-----ceeEEEEecCCCChHHHHHHHHhhhCC-----------CcCCceeeEeecC-cEEEecCCCCCCCCCC
Q 046966 2 SVLIETS-----LGDIVIDLFVDKCPRTTNNFLQHCKNK-----------YYNGCLFHNIHKD-FIAQTGDPTGTGTGGR 64 (299)
Q Consensus 2 ~v~~~T~-----~G~i~ieL~~~~~P~~~~nF~~l~~~~-----------~y~~~~f~ri~~~-~~iq~G~~~~~~~~~~ 64 (299)
.|.|+|+ .|+|+||||.+.||+||+||++||++. .|+|+.||||+++ ++||+||+... +.
T Consensus 54 rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g~ 130 (249)
T PTZ00221 54 RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---NV 130 (249)
T ss_pred EEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---Cc
Confidence 3666666 578999999999999999999999753 3999999999986 89999997643 33
Q ss_pred CCCCCcccccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCC
Q 046966 65 SVYEDRFFVDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRP 144 (299)
Q Consensus 65 ~~~~~~~~~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p 144 (299)
++++. .+.+| ...++|+++|+|+|++.++++++||||||+.+ +++||++|+|||+|++||+||++|++.+++..++|
T Consensus 131 s~~G~-~f~dE-~~~~~h~~~G~LsMan~GpntngSQFfITl~~-~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP 207 (249)
T PTZ00221 131 SSTGT-PIADE-GYRHRHTERGLLTMISEGPHTSGSVFGITLGP-SPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP 207 (249)
T ss_pred cCCCC-cccCc-cccccCCCCCEEEeCcCCCCCccceEEEECCC-CCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence 45654 46888 56789999999999999999999999999998 69999999999999999999999999999889999
Q ss_pred ceeEEEEEEEEECC
Q 046966 145 PQQIIIKQTYVLYP 158 (299)
Q Consensus 145 ~~~v~I~~~~v~~p 158 (299)
..+|+|.+|+++..
T Consensus 208 ~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 208 LLPVTVSFCGALTG 221 (249)
T ss_pred CCCeEEEECeEecC
Confidence 99999999999983
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=3.5e-41 Score=272.26 Aligned_cols=149 Identities=30% Similarity=0.532 Sum_probs=127.4
Q ss_pred EEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCC
Q 046966 3 VLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 3 v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+|+|+.|+|+|+||++.||+||+||++||+.+||+++.||||+|+|+||||++... .+. ..++ ..+.+|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~~-~~~~-~~~~~e~~~~~~~ 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MKQ-KATK-EPIKNEANNGLKN 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CCc-CCCC-CCcCCcccccccC
Confidence 689999999999999999999999999999999999999999999999999986532 111 1122 2356675556665
Q ss_pred CCceEEEEEcCC-CCCCcceEEEEecCCCCCCC-------C-CceEEEEeecCHHHHHHHHhcccCC----CCCCceeEE
Q 046966 83 DKVGTVGMASAG-RDLNASQFYITLRDNLHYLD-------E-KHTIFGEVAEGLETLTRINQAVVDE----ENRPPQQII 149 (299)
Q Consensus 83 ~~~G~l~~~~~~-~~~~~s~FfI~~~~~~~~ld-------~-~~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~v~ 149 (299)
.+|+||||+.+ |++++|||||++.+ .++|| + +|+|||+|++||+||++|++.+++. +++|..+|+
T Consensus 79 -~~G~lsma~~~~p~s~~SQFfI~~~~-~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 156 (164)
T PRK10791 79 -TRGTLAMARTQAPHSATAQFFINVVD-NDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVI 156 (164)
T ss_pred -CCcEEEECCCCCcCCccceEEEEecC-chhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeE
Confidence 79999999875 89999999999998 47665 3 7999999999999999999999976 369999999
Q ss_pred EEEEEEE
Q 046966 150 IKQTYVL 156 (299)
Q Consensus 150 I~~~~v~ 156 (299)
|.+|.|.
T Consensus 157 I~~~~i~ 163 (164)
T PRK10791 157 IESVTVS 163 (164)
T ss_pred EEEEEEe
Confidence 9999875
No 20
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=297.11 Aligned_cols=155 Identities=43% Similarity=0.771 Sum_probs=150.3
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
.|++.|+.|.|.||||+.+||++|.||++||..|||+|+.|||++|||++||||++++|+||.+||+.. |.+|++++|.
T Consensus 14 kvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~-fadE~h~Rlr 92 (439)
T KOG0885|consen 14 KVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRP-FADEFHPRLR 92 (439)
T ss_pred eEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCcccccccc-chhhcCccee
Confidence 589999999999999999999999999999999999999999999999999999999999999999987 6999999999
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeec-CHHHHHHHHhcccCCCCCCceeEEEEEEEEECC
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAE-GLETLTRINQAVVDEENRPPQQIIIKQTYVLYP 158 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~p 158 (299)
+.++|+|+||+.+.+.||||||+||++ +++|+++|++||+|+. .++.+.+|..+.++.+.+|..+..|.+|.|+.+
T Consensus 93 f~rrGlvgmana~~~~ngsqFfftl~~-~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~n 169 (439)
T KOG0885|consen 93 FNRRGLVGMANAGNDDNGSQFFFTLGD-TPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLIN 169 (439)
T ss_pred eeccceeeecccCCCCCCceEEEEecC-ChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecC
Confidence 999999999999999999999999998 8999999999999997 899999999999999999999999999999983
No 21
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=6.6e-41 Score=271.84 Aligned_cols=144 Identities=40% Similarity=0.731 Sum_probs=132.6
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhC--C------CcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKN--K------YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIR 77 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~--~------~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~ 77 (299)
++.|+|+||||.+.||+||+||++||++ + +|+++.||||+|+|+|||||+. .++.++.++|+.. +++| .
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~-~~~e-~ 89 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEK-FPDE-N 89 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCc-cCCC-C
Confidence 6899999999999999999999999984 4 7999999999999999999965 5677888888765 5677 5
Q ss_pred cCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEE
Q 046966 78 ADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTY 154 (299)
Q Consensus 78 ~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~ 154 (299)
..++|+++|+|+|++.++++++|||||++++ +++||++|+|||+|++||+||++|++.+++ +++|..+|+|.+|+
T Consensus 90 ~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~-~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 90 FKLKHTGPGLLSMANAGPNTNGSQFFITTVK-TPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred ccccCCCccEEEeeECCCCCcccEEEEEeCC-CCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 6789999999999999999999999999998 799999999999999999999999999998 89999999999996
No 22
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.6e-40 Score=273.28 Aligned_cols=146 Identities=40% Similarity=0.700 Sum_probs=132.7
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh---------CCCcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCccccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK---------NKYYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEI 76 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~---------~~~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~ 76 (299)
|+.|+|+||||.+.||++|+||++||+ .++|+|+.||||+|+++|||||+. ..+.++.++|+.. +++|
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~-~~~e- 104 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRK-FTDE- 104 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccc-cCCc-
Confidence 678999999999999999999999997 458999999999999999999976 4577888888654 5677
Q ss_pred ccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 77 RADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 77 ~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
...++|+.+|+|+|++.++++++|||||++.+ .++||++|+|||+|++||+||++|++..+ .+++|..+|+|.+|+++
T Consensus 105 ~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~-~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 105 NFKLKHDQPGLLSMANAGPNTNGSQFFITTVP-CPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182 (183)
T ss_pred cccccCCCCCEEEeccCCCCCCcceEEEEeCC-CcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcCCeEEEEeEEc
Confidence 56788989999999999999999999999998 69999999999999999999999998877 57899999999999986
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8e-40 Score=262.73 Aligned_cols=143 Identities=34% Similarity=0.542 Sum_probs=122.9
Q ss_pred EEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 046966 5 IETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHDK 84 (299)
Q Consensus 5 ~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 84 (299)
|+|+.|+|+||||++.||+||+||++||+.++|+++.||||+|+|++|||++...+.+.. ++ ..+.+|....+ |+.
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~~--~~-~~~~~e~~~~~-~~~ 77 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKE--TL-KPIKNEAGNGL-SNT 77 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCccc--cC-CcccCcccccc-cCC
Confidence 789999999999999999999999999999999999999999999999999876543321 22 23566644444 458
Q ss_pred ceEEEEEcCC-CCCCcceEEEEecCCCCCCCC-----CceEEEEeecCHHHHHHHHhcccCCC----CCCceeEEEEE
Q 046966 85 VGTVGMASAG-RDLNASQFYITLRDNLHYLDE-----KHTIFGEVAEGLETLTRINQAVVDEE----NRPPQQIIIKQ 152 (299)
Q Consensus 85 ~G~l~~~~~~-~~~~~s~FfI~~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~~~----~~p~~~v~I~~ 152 (299)
+|+|+||+.+ +++++|||||++.+ .++||+ +|+|||+|++||+||++|++.+++.. +.|..+|.|.+
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~-~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKD-NASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCC-chhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 9999999875 89999999999998 688985 79999999999999999999999764 68988888875
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=262.88 Aligned_cols=147 Identities=37% Similarity=0.629 Sum_probs=135.8
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCC---CcCCceeeEeecCcEEEecCCCC-CCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNK---YYNGCLFHNIHKDFIAQTGDPTG-TGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~---~y~~~~f~ri~~~~~iq~G~~~~-~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
-..|||+++|..+..|+|++||..||++. -|+|++||||+|.||+||||.+. +|+||.|||+.+ |.|| ++.|+|
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkk-fdde-nf~lkh 225 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKK-FDDE-NFTLKH 225 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccc-cccc-ceeeec
Confidence 45799999999999999999999999763 39999999999999999999874 599999999988 5888 889999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
..+|+||||++|+|+||||||||+.. ..|||++|+|||.|++||+||+++++. ..++|+|.+.|+|..|+.++
T Consensus 226 t~pgtlsmansgantngsqffict~k-tdwldgkhvvfghv~eg~~vvrq~e~q-gsksgkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 226 TMPGTLSMANSGANTNGSQFFICTEK-TDWLDGKHVVFGHVVEGMNVVRQVEQQ-GSKSGKPQQKVKIVECGEIE 298 (298)
T ss_pred CCCceeeccccCCCCCCceEEEEecc-cccccCceeEEeeecchHHHHHHHHhc-cCCCCCcceEEEEEeccccC
Confidence 99999999999999999999999986 799999999999999999999999665 45899999999999998753
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.4e-38 Score=254.53 Aligned_cols=146 Identities=41% Similarity=0.684 Sum_probs=131.8
Q ss_pred EEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCC
Q 046966 4 LIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHD 83 (299)
Q Consensus 4 ~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 83 (299)
+++|+.|+|+|+||++.||++|+||++||++++|+++.|||++|++++|||++...+..+ +.++ ..+++|......|+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~-~~~~~E~~~~~~~~ 78 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPG-YKFPDENFPLKYHH 78 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCC-CccCCccccCcCcC
Confidence 478999999999999999999999999999999999999999999999999987664432 2233 34788877777688
Q ss_pred CceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEE
Q 046966 84 KVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQ 152 (299)
Q Consensus 84 ~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~ 152 (299)
++|+|+|++.++++++|||||++.+ .++||++|+|||+|++||++|++|+..+++++++|..+|+|..
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAP-TPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCC-CcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 9999999999999999999999998 7999999999999999999999999999999999999999863
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=6.7e-38 Score=253.09 Aligned_cols=150 Identities=47% Similarity=0.729 Sum_probs=130.5
Q ss_pred EEEEEEc-ceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCC-CCCCCccccccccc-
Q 046966 2 SVLIETS-LGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGR-SVYEDRFFVDEIRA- 78 (299)
Q Consensus 2 ~v~~~T~-~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~-~~~~~~~~~~e~~~- 78 (299)
.|.|+|+ +|+|+||||++.||++|+||++||+.++|+|+.|||++|++++|+|++...+..+. ....+..+++|...
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 3789997 99999999999999999999999999999999999999999999999876544211 11122347888653
Q ss_pred CCCCCCceEEEEEcCC--CCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 79 DLKHDKVGTVGMASAG--RDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 79 ~~~~~~~G~l~~~~~~--~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
.+.| .+|+|+|++.+ +++++|||||+|.+ .++||++|+|||+|++||++|++|++.+++. +|.++|+|.+|+|
T Consensus 81 ~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~-~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 81 LLKH-RRGLVSMARSGKDPNSNGSQFFITLSD-APHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSS-STTEEEEEBSSSSTTEBSSEEEEESSC-GGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred cccc-cceeeeecccccCCCCCCceEEeeccC-CCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 4555 99999999986 78899999999998 6899999999999999999999999998876 9999999999997
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=4.7e-37 Score=250.78 Aligned_cols=131 Identities=31% Similarity=0.535 Sum_probs=110.3
Q ss_pred EEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCC---------------------CC
Q 046966 6 ETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTG---------------------GR 64 (299)
Q Consensus 6 ~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~---------------------~~ 64 (299)
.|++|+|+|+||++.||+||+||++||+.++|+++.||||+++|++||||+...+.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999999999999999999998765322 22
Q ss_pred CCCCCccc---ccccccCCCCCCceEEEEEcCC--CCCCcceEEEEecC------CCCCCCCCceEEEEeecCHHHHHHH
Q 046966 65 SVYEDRFF---VDEIRADLKHDKVGTVGMASAG--RDLNASQFYITLRD------NLHYLDEKHTIFGEVAEGLETLTRI 133 (299)
Q Consensus 65 ~~~~~~~~---~~e~~~~~~~~~~G~l~~~~~~--~~~~~s~FfI~~~~------~~~~ld~~~~vfG~V~~G~~vl~~i 133 (299)
++|+..+. .++....+.|+.+|+|+||+.+ +++++|||||++++ .+++||++|+|||+|++||+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 34432211 0222455778899999999987 69999999999994 4799999999999999999999999
Q ss_pred Hhc
Q 046966 134 NQA 136 (299)
Q Consensus 134 ~~~ 136 (299)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 644
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=213.57 Aligned_cols=146 Identities=39% Similarity=0.685 Sum_probs=132.7
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCC---CcCCceeeE---eecCcEEEecCCC-CCCCCCCCCCCCcccccccccC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNK---YYNGCLFHN---IHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIRAD 79 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~---~y~~~~f~r---i~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~~~ 79 (299)
+++|++.++||.+..|+|++||..||++. -|++..||| .+++|++||||.+ .++++|.++|+++| +|| ++.
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF-~De-nFi 92 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKF-DDE-NFI 92 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEeccccc-CCc-CcE
Confidence 78999999999999999999999999853 399999999 3457999999975 55999999999885 888 899
Q ss_pred CCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 80 LKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 80 ~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
++|..+|+|+|||.+||+|+||||||+.. ..|||++|+|||+|.+||+++++|+. -..+++++..+|.|.+|+.+
T Consensus 93 lkhtgpGiLSmaNagpntngsqffictak-tewLdgkhVVfGkv~eGm~iv~a~e~-~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 93 LKHTGPGILSMANAGPNTNGSQFFICTAK-TEWLDGKHVVFGKVKEGMDIVEAMER-FGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred EecCCCCeeehhhcCCCccccEEEEEccc-cccccCceeEcCceEcccchhhhhhc-cCCcCCcccccEEEecCCcC
Confidence 99999999999999999999999999997 59999999999999999999999966 55678999999999999853
No 29
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.4e-17 Score=132.02 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=80.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 98664
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=5.1e-16 Score=141.62 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=79.9
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.+.+|||+|||+.+++++|+++|++||.|.++++++++.++.++|||||+|.+.++|.+|+..|||..++||.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
++.+
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 8754
No 31
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=2.2e-15 Score=137.43 Aligned_cols=83 Identities=28% Similarity=0.495 Sum_probs=79.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+..+|||+|||+.+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|||..+.|+.|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 764
No 32
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=4.9e-15 Score=102.59 Aligned_cols=70 Identities=41% Similarity=0.685 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 214 LFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 214 v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
|||+|||+++++++|+++|++||.+..+.+..+ .++..+|+|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6899999999999999999999999999999999985
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4e-15 Score=126.04 Aligned_cols=91 Identities=34% Similarity=0.532 Sum_probs=85.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.|-+||||+.|+++++|..|+..|+.||.|+.++|+.+..||+++|||||+|.+..+.+.|.+..+|..|+|+.|.|++.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccccCC
Q 046966 289 QSV-SKIWKKSY 299 (299)
Q Consensus 289 ~~~-~~~~~~~~ 299 (299)
+.+ -+.|..+|
T Consensus 179 RgRTvkgW~PRR 190 (335)
T KOG0113|consen 179 RGRTVKGWLPRR 190 (335)
T ss_pred cccccccccccc
Confidence 876 35677654
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=3.7e-15 Score=134.41 Aligned_cols=84 Identities=27% Similarity=0.504 Sum_probs=80.2
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|++|++.|++..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 35
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.1e-15 Score=122.72 Aligned_cols=84 Identities=27% Similarity=0.437 Sum_probs=80.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|-|.||+.+++|++|+++|.+||.|.++.|.+|+.||.++|||||.|.+.++|.+|+..|||+-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 36
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=7.7e-15 Score=120.68 Aligned_cols=78 Identities=35% Similarity=0.492 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
-++||||+|+|.+..+.|+++|++||+|+++.++.|+.+|+++|||||+|.+.++|.+|++. ..-.|+||+..+.+|-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999976 4567999998888765
No 37
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=108.07 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=78.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.-.++.|||.+++..++++++.+.|..||+|+.+.+..|+.||..+|||+|+|.+.+.|++|+..|||..|.|+.|.|+|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 046966 288 SQ 289 (299)
Q Consensus 288 a~ 289 (299)
+=
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 65
No 38
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=1.4e-13 Score=95.55 Aligned_cols=70 Identities=34% Similarity=0.624 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 214 LFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 214 v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
|||+|||+++++++|.++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 89999999999999999999999999999999875
No 39
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.9e-14 Score=121.49 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=75.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
..+++|+|+|+|+...+-||+.+|++||.|.+|.|+.+ ..-+||||||+|++.++|++|-+.|||..+.||+|.|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 45789999999999999999999999999999999997 3458999999999999999999999999999999999999
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 875
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=5e-14 Score=117.28 Aligned_cols=89 Identities=26% Similarity=0.442 Sum_probs=83.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
......+.|..||.++++++++.+|+..|+|++|++++|+.+|++.|||||.|-++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccc
Q 046966 288 SQSVSKIWK 296 (299)
Q Consensus 288 a~~~~~~~~ 296 (299)
|+|.+..++
T Consensus 118 ARPSs~~Ik 126 (360)
T KOG0145|consen 118 ARPSSDSIK 126 (360)
T ss_pred ccCChhhhc
Confidence 999765443
No 41
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.52 E-value=7.6e-14 Score=125.94 Aligned_cols=84 Identities=33% Similarity=0.554 Sum_probs=78.0
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD--RRICVDF 287 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g--~~l~v~~ 287 (299)
..++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.||+..+.+ ++|.|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999998899999999999999999999999999998875 7899999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
+....+
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 987543
No 42
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.51 E-value=4.8e-14 Score=134.16 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=77.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
...++|||+|||+.+++++|+++|.+||.|.+|++++|+.+++++|||||+|.+.++|++|++.|||..++||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 53
No 43
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=9.9e-14 Score=132.01 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=78.0
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++.||+..++|+.|+|.++.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999885
Q ss_pred c
Q 046966 291 V 291 (299)
Q Consensus 291 ~ 291 (299)
+
T Consensus 284 p 284 (612)
T TIGR01645 284 P 284 (612)
T ss_pred C
Confidence 4
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=123.13 Aligned_cols=88 Identities=23% Similarity=0.378 Sum_probs=82.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v~~ 287 (299)
+.+|.||||.||.++.|++|..+|++.|.|-.++|+.|+.+|.+||||||.|.+.+.|+.|++.||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999986 99999999
Q ss_pred cCCcccccc
Q 046966 288 SQSVSKIWK 296 (299)
Q Consensus 288 a~~~~~~~~ 296 (299)
+....|+..
T Consensus 161 Svan~RLFi 169 (506)
T KOG0117|consen 161 SVANCRLFI 169 (506)
T ss_pred eeecceeEe
Confidence 887776643
No 45
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=108.74 Aligned_cols=81 Identities=26% Similarity=0.399 Sum_probs=74.2
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+..++||||||+..+++.+|+..|..||.+.++.|-.. ..|||||+|++..+|+.|+..|+|..|.|..|+|++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 355899999999999999999999999999999987654 468999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++...+
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 987654
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1e-13 Score=103.56 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=76.7
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.+++||||||++.++|++|.++|+++|.|..+-+=.|+.+....||+||+|.+.++|..|++.++++.++.+.|+++|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 47999999999999999999999999999999888888888899999999999999999999999999999999999865
Q ss_pred C
Q 046966 290 S 290 (299)
Q Consensus 290 ~ 290 (299)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.3e-13 Score=114.70 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=70.6
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+.+++++|+++|+.||.|.++.|+.++. .+|||||+|.+.++|+.|+ .|+|..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 4689999999999999999 5999999999999999873
No 48
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=8.3e-14 Score=112.29 Aligned_cols=81 Identities=31% Similarity=0.414 Sum_probs=77.4
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.-..|-|-||.+-++.++|..+|++||.|-.|.|++|+.|+.++|||||-|....+|+.|+.+|+|.+|+|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 046966 290 S 290 (299)
Q Consensus 290 ~ 290 (299)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=3e-13 Score=121.74 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=73.2
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCH--HHHHHHHHHhCCceeCCeEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKR--EACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~--~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....+||||||++.+++++|...|+.||.|.++.|++ .+| ||||||+|... .++.+|+..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3468999999999999999999999999999999994 577 89999999987 68999999999999999999999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99985
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.7e-13 Score=114.72 Aligned_cols=82 Identities=33% Similarity=0.564 Sum_probs=77.9
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
-.-+||+-|...++-++|++.|.+||+|.++++++|..|++++|||||.|.+.++|++||..|||..|++|.|+-.||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc
Q 046966 291 VS 292 (299)
Q Consensus 291 ~~ 292 (299)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 43
No 51
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.2e-14 Score=113.63 Aligned_cols=84 Identities=27% Similarity=0.417 Sum_probs=80.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
...++||||+|...+++.-|...|-+||.|..+.++.|..++++||||||+|...++|.+|+..||+.+|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 9864
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.44 E-value=4.1e-13 Score=127.56 Aligned_cols=86 Identities=23% Similarity=0.343 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v~~ 287 (299)
...++|||+|||++++|++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++|++.||+..+. |+.|.|..
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 79999999999999999999999999999985 88888887
Q ss_pred cCCccccc
Q 046966 288 SQSVSKIW 295 (299)
Q Consensus 288 a~~~~~~~ 295 (299)
+....+++
T Consensus 135 S~~~~rLF 142 (578)
T TIGR01648 135 SVDNCRLF 142 (578)
T ss_pred cccCceeE
Confidence 76544443
No 53
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.43 E-value=7.4e-13 Score=128.15 Aligned_cols=78 Identities=32% Similarity=0.494 Sum_probs=75.4
Q ss_pred eEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
+|||+|||+++++++|+++|++||.|.+|++.+|..+++++|||||+|.+.++|++|+..||+..+.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 699999999999999999999999999999999998999999999999999999999999999999999999999763
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.42 E-value=1.1e-12 Score=125.39 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+..+|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 754
No 55
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=1.1e-12 Score=123.96 Aligned_cols=80 Identities=29% Similarity=0.439 Sum_probs=77.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 37899999999999999999999999999999999998889999999999999999999999999999999999999976
No 56
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=8e-13 Score=127.93 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=78.9
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
....+|||+||++.+++++|+++|++||.|.+++++.+ .+|+++|||||.|.+.++|.+|+..|||..++|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 9764
No 57
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=5.2e-14 Score=111.26 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.+.-|||||||+..||.||.-+|++||+|+.+.+++|+.||+++||||+-|.+-.+---|+..|||..|.||.|+|++.-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 46789999999999999999999999999999999999999999999999999988888999999999999999999754
No 58
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.9e-12 Score=88.21 Aligned_cols=72 Identities=40% Similarity=0.636 Sum_probs=67.1
Q ss_pred eEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
+|||+|||..+++++|+++|.+||.+..+.+..++ +.++|+|||+|.+.++|++|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988775 7788999999999999999999999999999998873
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.7e-12 Score=106.23 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=79.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
..+++|||-||.++++|.-|+.+|++||.|..+++++|..|.+++|||||.+.+.++|..|+..|||+.+++|.|.|.|.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
.++.
T Consensus 356 tnk~ 359 (360)
T KOG0145|consen 356 TNKA 359 (360)
T ss_pred cCCC
Confidence 7653
No 60
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=3.9e-12 Score=106.53 Aligned_cols=76 Identities=30% Similarity=0.440 Sum_probs=69.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.+++|||+||++.+++++|+++|+.||.|.+|+|+++. ..+|||||+|.+.++++.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 46899999999999999999999999999999999884 44579999999999999999 789999999999998744
No 61
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.37 E-value=3.7e-12 Score=120.28 Aligned_cols=81 Identities=30% Similarity=0.385 Sum_probs=76.4
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+. |+|..+.|++|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457899999999999999999999999999999999999999999999999999999999995 8999999999999987
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 64
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.36 E-value=9.3e-13 Score=104.35 Aligned_cols=82 Identities=29% Similarity=0.365 Sum_probs=78.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.....+|||+||+..++++.|.++|-+.|+|..+.+++|+.++..+||||++|.+.++|+-|++.||...+.||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 046966 288 SQ 289 (299)
Q Consensus 288 a~ 289 (299)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 77
No 63
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.3e-12 Score=87.01 Aligned_cols=71 Identities=39% Similarity=0.617 Sum_probs=66.5
Q ss_pred EEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 216 VCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 216 v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
|+|||..+++++|+.+|++||.+..+.+..++.++.++|+|||+|.+.++|.+|+..|++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999887788999999999999999999999999999999998873
No 64
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.5e-12 Score=105.81 Aligned_cols=79 Identities=25% Similarity=0.482 Sum_probs=73.5
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
..+.+++||+||++.-++|++|++.|++||.|.+|++.++ +||+||.|.+.++|.+||..||+.+++|+.+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3467899999999999999999999999999999999887 4899999999999999999999999999999999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
|-+..
T Consensus 234 WGKe~ 238 (321)
T KOG0148|consen 234 WGKEG 238 (321)
T ss_pred ccccC
Confidence 97753
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.4e-12 Score=109.15 Aligned_cols=86 Identities=29% Similarity=0.477 Sum_probs=82.6
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
..+.+|.|||-.||.+..+.+|..+|-.||.|.+.++..|+.|.++++||||.|.+..+++.||..|||+.|+-++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
+.+|+.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 999875
No 66
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=3.5e-12 Score=116.97 Aligned_cols=81 Identities=28% Similarity=0.471 Sum_probs=78.9
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
+.+||||+|+++++++|..+|+..|.|.+++++.|+.||+.+||||++|.+.+.|.+|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred c
Q 046966 292 S 292 (299)
Q Consensus 292 ~ 292 (299)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=7.7e-12 Score=114.01 Aligned_cols=83 Identities=31% Similarity=0.468 Sum_probs=77.0
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|.|.|||+.+.+.+|+.+|+.||.|..+.|++.+ .|+.+|||||+|....+|..|++.+|+.+|+||+|.|+||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 47899999999999999999999999999999999775 55666999999999999999999999999999999999999
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
++..
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 8753
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=108.83 Aligned_cols=79 Identities=38% Similarity=0.584 Sum_probs=76.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.++|||+|||+.+++++|.++|.+||.+..+.+..++.+++++|||||.|.+.++|..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999965
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2e-11 Score=87.98 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=72.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
...+.|||.|||+.++.++..++|++||.|..+++=.. ...+|-|||.|++..+|.+|+..|+|+-+.++.|.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 45778999999999999999999999999999988443 456899999999999999999999999999999999998
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
.+-
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 764
No 70
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.29 E-value=1.7e-11 Score=116.65 Aligned_cols=77 Identities=32% Similarity=0.489 Sum_probs=70.4
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccC--CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQF--GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....+|||+||++++++++|+++|++| |.|.+|++++ +||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999987653 599999999999999999999999999999999
Q ss_pred ecCCccc
Q 046966 287 FSQSVSK 293 (299)
Q Consensus 287 ~a~~~~~ 293 (299)
+++++.+
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9998643
No 71
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.29 E-value=1.8e-11 Score=116.12 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCCCceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
.+++++|||+||++ .+++++|+.+|++||.|.+|+++.++ +|||||+|.+.++|..|+..|||..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998862 5899999999999999999999999999999999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98653
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=4.2e-11 Score=82.78 Aligned_cols=74 Identities=43% Similarity=0.653 Sum_probs=68.3
Q ss_pred eEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
+|+|+|||+.+++++|+.+|+.+|.+..+.+..++.+ ..+|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887544 7789999999999999999999999999999998864
No 73
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.2e-11 Score=98.28 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||.++.+.+|+++|-+||.|..|.|... ....+||||+|++..+|+.|+..-+|+.++|.+|+|++++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4789999999999999999999999999999987443 2346799999999999999999999999999999999998
Q ss_pred Cc
Q 046966 290 SV 291 (299)
Q Consensus 290 ~~ 291 (299)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 64
No 74
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.6e-11 Score=110.63 Aligned_cols=83 Identities=31% Similarity=0.412 Sum_probs=76.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh-----CC-ceeCCeEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKM-----NN-ALIDDRRI 283 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l-----~~-~~i~g~~l 283 (299)
...+|||.|||+++++++|...|++||.|..+.++.++.|+.++|.|||.|.+..+|+.||... .| ..|.||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 4589999999999999999999999999999999999999999999999999999999999876 23 67889999
Q ss_pred EEEecCCcc
Q 046966 284 CVDFSQSVS 292 (299)
Q Consensus 284 ~v~~a~~~~ 292 (299)
.|..|.++.
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999988753
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=5.6e-12 Score=109.73 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=76.0
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
-|+||||.+.+...|+.|+..|..||.|+++.+.||+.|++++|||||+|+-++.|+-|++.|||.+++||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999998544
No 76
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=6e-12 Score=111.76 Aligned_cols=83 Identities=29% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce-eC--CeEEEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL-ID--DRRICVD 286 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-i~--g~~l~v~ 286 (299)
..++||||-|+..++|.+++++|++||.|++|.|++| ..+.+||||||.|.+.+-|..|++.|||.. +. ..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 4789999999999999999999999999999999999 579999999999999999999999999964 44 5789999
Q ss_pred ecCCccc
Q 046966 287 FSQSVSK 293 (299)
Q Consensus 287 ~a~~~~~ 293 (299)
||++.+.
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9998754
No 77
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=3.6e-11 Score=114.06 Aligned_cols=76 Identities=25% Similarity=0.272 Sum_probs=69.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh--CCceeCCeEEEEEe
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKM--NNALIDDRRICVDF 287 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~~~~i~g~~l~v~~ 287 (299)
|+++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.| ++..+.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999998754 479999999999999999864 77899999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 78
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=5.7e-11 Score=82.35 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=55.4
Q ss_pred HHHHHHhcc----cCCCeEEEE-EeecCCC--CCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 225 DEDLHVIFS----QFGTVVSAE-ILRDYRT--GESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 225 e~~L~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
+++|+++|+ +||.|.++. ++.++.+ +.++|||||.|.+.++|.+|++.|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7776666 8999999999999999999999999999999999863
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.21 E-value=4.5e-11 Score=106.36 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=75.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcc-cCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFS-QFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....+.+||+|+|+++.+.+|+++|. +.|+|..|.+..| .+|++||+|.|+|++++.+++|++.||.+.+.||.|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456799999999999999999995 6899999999999 699999999999999999999999999999999999998
Q ss_pred ecCC
Q 046966 287 FSQS 290 (299)
Q Consensus 287 ~a~~ 290 (299)
-...
T Consensus 120 Ed~d 123 (608)
T KOG4212|consen 120 EDHD 123 (608)
T ss_pred ccCc
Confidence 7654
No 80
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.6e-11 Score=107.72 Aligned_cols=84 Identities=23% Similarity=0.447 Sum_probs=76.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce-eC--CeEEEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL-ID--DRRICVD 286 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-i~--g~~l~v~ 286 (299)
..-++|||.+|..++|.||+.+|++||.|.+|.|++|+.|+.++||+||.|.+.++|.+|+.+||+.. |- ..+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999865 33 5789999
Q ss_pred ecCCccc
Q 046966 287 FSQSVSK 293 (299)
Q Consensus 287 ~a~~~~~ 293 (299)
+|+..+.
T Consensus 113 ~Ad~E~e 119 (510)
T KOG0144|consen 113 YADGERE 119 (510)
T ss_pred ccchhhh
Confidence 9987543
No 81
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=9.4e-11 Score=77.50 Aligned_cols=56 Identities=30% Similarity=0.519 Sum_probs=50.5
Q ss_pred HHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 228 LHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 228 L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
|.++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887652 589999999999999999999999999999999986
No 82
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=4.7e-11 Score=106.58 Aligned_cols=76 Identities=36% Similarity=0.519 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.-..|||.||+.++|++.|+++|++||.|.+|+.++| ||||-|.+.++|.+|++.+||+.|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3467999999999999999999999999999988776 99999999999999999999999999999999999
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
|..+
T Consensus 330 P~~k 333 (506)
T KOG0117|consen 330 PVDK 333 (506)
T ss_pred Chhh
Confidence 8754
No 83
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.17 E-value=3.7e-11 Score=109.92 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=74.4
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
-..+|||||++++++++|+..|++||.|..+.+.+|..||+++|||||+|.+.++|.+|+..|||..|-|+.|+|..-.
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3349999999999999999999999999999999998899999999999999999999999999999999999988644
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=93.85 Aligned_cols=84 Identities=31% Similarity=0.398 Sum_probs=76.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccC-CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQF-GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
......+|+..+|..+.+.++..+|.+| |.+...++.+++.||.++|||||+|.+.+.|+-|-+.||++.+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 777788888999999999999999999999999999999999999999998
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
+=-|-
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 85543
No 85
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=4.8e-11 Score=101.19 Aligned_cols=75 Identities=29% Similarity=0.512 Sum_probs=70.9
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
.++||||||..+++.+|+.+|++||.|.+|.|+++ ||||-.++...++.|+..||++.|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred ccc
Q 046966 292 SKI 294 (299)
Q Consensus 292 ~~~ 294 (299)
++.
T Consensus 75 sk~ 77 (346)
T KOG0109|consen 75 SKA 77 (346)
T ss_pred CCC
Confidence 543
No 86
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=95.98 Aligned_cols=86 Identities=24% Similarity=0.424 Sum_probs=76.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHH----hcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHV----IFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~----~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
++..++||.||+..+..++|+. +|++||.|..|... .+.+.||.|||.|.+.+.|-.|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4556999999999999998887 99999999988764 3678999999999999999999999999999999999
Q ss_pred EEecCCccccccc
Q 046966 285 VDFSQSVSKIWKK 297 (299)
Q Consensus 285 v~~a~~~~~~~~~ 297 (299)
|+||++.+....+
T Consensus 84 iqyA~s~sdii~~ 96 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQ 96 (221)
T ss_pred eecccCccchhhc
Confidence 9999998765443
No 87
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.07 E-value=1.6e-10 Score=91.77 Aligned_cols=83 Identities=30% Similarity=0.476 Sum_probs=76.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS-AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+..+||+||.+.++|..|.+.|+.||.+.. .++++++.||.++||||+.|.+.+.+.+|+..|||..+.++++.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 34689999999999999999999999999874 58899999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
+.-+
T Consensus 174 a~k~ 177 (203)
T KOG0131|consen 174 AFKK 177 (203)
T ss_pred EEec
Confidence 8754
No 88
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=6.2e-10 Score=102.14 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=77.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
..++.+||.+|...+...+|+.+|++||.|+-.+++.+..+.-.+||+||++.+..+|.+||..||.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45678999999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 74
No 89
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=1.3e-09 Score=103.44 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=71.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
--++|||||+|+.++++.+|..+|+.||.|.++.++-. +|+|||.+...++|.+|+..|+.+.+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 34689999999999999999999999999999987654 689999999999999999999999999999999999
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
..+
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 864
No 90
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=9.3e-10 Score=96.08 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=75.8
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
-.+|||..++++.+++||+..|+.||+|++|.+-+++..+.++||||++|.+..+...|+..||-+.++|+-|+|-.+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999987653
No 91
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.1e-09 Score=91.90 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=75.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID---DRRICVD 286 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~---g~~l~v~ 286 (299)
.++++|||.|...-.|+|++.+|..||.+.+|.+.+.+ .|.++|+|||.|.+..+|+.||..|||..-. ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999984 7899999999999999999999999996533 5679999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
|++..+.+
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99976533
No 92
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.1e-09 Score=96.74 Aligned_cols=76 Identities=30% Similarity=0.577 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCcc
Q 046966 214 LFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSVS 292 (299)
Q Consensus 214 v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~~ 292 (299)
+||.||+++++..+|.++|+.||.|++|++..+ ..| ++|| ||+|.+.++|++|+..|||..+.|++|.|.....+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 999999999999999999999999999999999 456 9999 999999999999999999999999999998877653
No 93
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.90 E-value=1.4e-09 Score=95.84 Aligned_cols=82 Identities=29% Similarity=0.397 Sum_probs=75.8
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..+++||++|+|.++++.|+++|.+||.|..|.+++|+.+++++||+||+|.+.+...+++.. ..+.|.|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 579999999999999999999999999999999999999999999999999999988888843 5678999999999988
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
|+.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 875
No 94
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=6.6e-09 Score=97.94 Aligned_cols=79 Identities=34% Similarity=0.468 Sum_probs=70.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCC---CCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRT---GESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+++||.||++.++.++|...|...|.|.++.|...+.. -.+.|||||+|.+.++|++|++.|+|+.|.|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765422 13569999999999999999999999999999999999
Q ss_pred cC
Q 046966 288 SQ 289 (299)
Q Consensus 288 a~ 289 (299)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 98
No 95
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.87 E-value=3.3e-09 Score=90.19 Aligned_cols=75 Identities=28% Similarity=0.564 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
...+++|+|+.+.++..+|+..|.+||.+.+|.|+++ |+||-|...++|..|++.|++.++.|++++|+.+.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 5688999999999999999999999999999999887 99999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
++-
T Consensus 149 srl 151 (346)
T KOG0109|consen 149 SRL 151 (346)
T ss_pred ccc
Confidence 864
No 96
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=6.2e-09 Score=98.13 Aligned_cols=82 Identities=16% Similarity=0.375 Sum_probs=76.3
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
...|+|.|+|+..+..+++.+|..||.+.+|+|+.-...+.++|||||+|-++.+|.+|+.+|.++.+.||+|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 56899999999999999999999999999999988756677899999999999999999999999999999999999987
Q ss_pred cc
Q 046966 291 VS 292 (299)
Q Consensus 291 ~~ 292 (299)
..
T Consensus 693 d~ 694 (725)
T KOG0110|consen 693 DN 694 (725)
T ss_pred ch
Confidence 53
No 97
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.8e-08 Score=91.70 Aligned_cols=74 Identities=34% Similarity=0.449 Sum_probs=69.1
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
..+||| +++++..|.+.|+++|.+.++++.+|. | +.|||||.|.++.+|.+|+..||...+.|++|++.|+.-.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368898 899999999999999999999999996 5 9999999999999999999999999999999999998643
No 98
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.77 E-value=2.6e-08 Score=87.88 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=76.8
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
...++||++||.++++++++++|.+||.|..+.++.|..+.+.+||+||.|.+.+++.+++. ..-+.|+++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46789999999999999999999999999999999999999999999999999999999984 47788999999999999
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
|+.-
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 8753
No 99
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.77 E-value=2.9e-08 Score=95.05 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=69.1
Q ss_pred CCCceEEEEcCCCCC----------CHHHHHHhcccCCCeEEEEEeec---CCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 046966 209 PPDNVLFVCQLNPVT----------EDEDLHVIFSQFGTVVSAEILRD---YRTGESLCYAFVEFEKREACEQAYFKMNN 275 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~----------~e~~L~~~f~~~G~i~~~~~~~~---~~~g~~~g~afv~f~~~~~a~~al~~l~~ 275 (299)
.+..+|++.|+...- ..++|+++|++||.|..|.|+++ ..++.+.|++||+|.+.++|++|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 356889999996421 12578999999999999999875 23456789999999999999999999999
Q ss_pred ceeCCeEEEEEecCC
Q 046966 276 ALIDDRRICVDFSQS 290 (299)
Q Consensus 276 ~~i~g~~l~v~~a~~ 290 (299)
..++|+.|.|.|...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999999764
No 100
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.75 E-value=4.4e-08 Score=89.67 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=71.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.....|||.|||.+++..+|+++|.+||.|+...|......++..+||||+|.+..+++.|+++ +-..+++++|.|+-.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3455699999999999999999999999999888766433355559999999999999999987 678899999999988
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
++..
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 8754
No 101
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=4.1e-08 Score=85.51 Aligned_cols=75 Identities=29% Similarity=0.434 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHH-HhCCceeCCeEEEEEec
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYF-KMNNALIDDRRICVDFS 288 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~-~l~~~~i~g~~l~v~~a 288 (299)
.-.+|||++|...+++.+|++.|-+||+|.++.+... +++|||+|.+.++|+.|.+ .++...|+|++|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3568999999999999999999999999999988765 3599999999999998875 45556789999999999
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 102
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=1.4e-07 Score=77.55 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeec-CCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRD-YRTGESLCYAFVEFEKREACEQAYFKMNNALID---DRRIC 284 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~---g~~l~ 284 (299)
..-++|||.+||.++...+|..+|..|-..+.+.+... +.....+-+||+.|.+.+.|.+|++.|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999977776655433 222345689999999999999999999999987 88899
Q ss_pred EEecCCccccc
Q 046966 285 VDFSQSVSKIW 295 (299)
Q Consensus 285 v~~a~~~~~~~ 295 (299)
+++|++..|+.
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99999876553
No 103
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=9.5e-08 Score=81.20 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=76.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
....+|+|.|||+.+.++||+++|..||.+..+.+..+ .+|++.|.|-|.|...++|.+|++.+|+..++|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44588999999999999999999999999999999898 58999999999999999999999999999999999999886
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
.+.+
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6543
No 104
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.65 E-value=5.2e-08 Score=87.19 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=68.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
...|+|||.|||.++|++.|++-|..||.|..+.|+. .|+++| .|.|.++++|++|+..|++..+.||.|.|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4578999999999999999999999999999988843 577877 79999999999999999999999999999874
No 105
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.64 E-value=2.1e-08 Score=83.78 Aligned_cols=86 Identities=29% Similarity=0.397 Sum_probs=78.4
Q ss_pred CCCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 205 ADVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 205 ~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
.+....+.+||.|-|.-+++.+-|...|.+|-.....++++++.||+++||+||.|.+..++.+|+..|+|..++.|+|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 34455678999999999999999999999999888999999999999999999999999999999999999999999998
Q ss_pred EEecCC
Q 046966 285 VDFSQS 290 (299)
Q Consensus 285 v~~a~~ 290 (299)
++-+..
T Consensus 264 lRkS~w 269 (290)
T KOG0226|consen 264 LRKSEW 269 (290)
T ss_pred hhhhhH
Confidence 876543
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.61 E-value=1.9e-07 Score=81.35 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeE--------EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVV--------SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDR 281 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~ 281 (299)
.+..|||+|||.++|-+++.++|+++|.|. .|++.++ ..|..+|=|.+.|...+++.-|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 356699999999999999999999999885 4788888 4699999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 046966 282 RICVDFSQS 290 (299)
Q Consensus 282 ~l~v~~a~~ 290 (299)
.|+|+.|+=
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999998863
No 107
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=2.4e-07 Score=78.85 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=76.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
......+||+|+.+.++.+++...|+.||.+..+.++.++.++.++||+||+|.+.+.++.++. |++..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457899999999999999999999999999999999998888999999999999999999997 999999999999998
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7643
No 108
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.46 E-value=3.1e-07 Score=86.80 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecC---CCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDY---RTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
|..+.+||+||++.++++.|...|+.||++.++++++.+ ...+.+-+|||.|-+..+|++|++.|+|..+.++.+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 345679999999999999999999999999999998864 22456779999999999999999999999999999999
Q ss_pred EecCCc
Q 046966 286 DFSQSV 291 (299)
Q Consensus 286 ~~a~~~ 291 (299)
-|+++.
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 998653
No 109
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.39 E-value=3.1e-06 Score=61.84 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCCCHHHHHHhccc--CCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC----CeEEEE
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQ--FGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID----DRRICV 285 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~----g~~l~v 285 (299)
+||.|.|+|...+.++|.+++.. .|....+-++.|..++-+.|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988854 366678889999889999999999999999999999999998865 566778
Q ss_pred EecCC
Q 046966 286 DFSQS 290 (299)
Q Consensus 286 ~~a~~ 290 (299)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88763
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=1.9e-07 Score=76.59 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=73.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+..++|||+|+...++|+-|.++|-+-|.|.++.|..++ .+..+ ||||.|.++.+..-|++.|||..+.++.+.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3457899999999999999999999999999999998874 45566 999999999999999999999999999999988
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
....
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6654
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=7.1e-07 Score=74.33 Aligned_cols=72 Identities=18% Similarity=0.407 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
..+||++||+.+.+.+|..+|..||.+..+.+. .||+||.|.+..+|..|+..+|+..++|-.+.|.+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999888663 358999999999999999999999999999999999853
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=6.2e-07 Score=82.83 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
+..+|+|.|||..+++++|..+|+.||+|..++. +...+|..||+|.+..+|++|+++|++..+.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999998654 455678999999999999999999999999999988
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=3.1e-06 Score=78.74 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=79.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....+.+||++||...++.++.+++..||.+..-.++.+..+|.++||||.+|.+......|+..|||..++++.|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34578899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
|....+
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 886543
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.01 E-value=2.6e-05 Score=69.68 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=68.6
Q ss_pred CceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 211 DNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 211 ~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+..|.|.||.. .+|.+.|..+|+.||.|.+++|..++. --|.|+|.+...|+-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888998865 589999999999999999999998743 479999999999999999999999999999999988
Q ss_pred Cc
Q 046966 290 SV 291 (299)
Q Consensus 290 ~~ 291 (299)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 115
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6.8e-06 Score=74.35 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=122.1
Q ss_pred EEEEEcce----eEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCC-CCCCCC-CCCCc----cc
Q 046966 3 VLIETSLG----DIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGT-GTGGRS-VYEDR----FF 72 (299)
Q Consensus 3 v~~~T~~G----~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~-~~~~~~-~~~~~----~~ 72 (299)
+.+.|..| -|.|+|+.+-.|.-++.|..+|.-+++++..|.+|...+++|.||.... ..+|.- .|.+. +.
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 56778899 8999999999999999999999999999999999999999999995433 323321 11111 33
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEE
Q 046966 73 VDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQ 152 (299)
Q Consensus 73 ~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~ 152 (299)
..+.+..++|. .-++.+.+......+-+|++.-.. -+-++.+..|||++..|-++++.|.+..++....|..++.|..
T Consensus 181 r~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 181 RTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccc-chhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 44457778884 466677666555566788888876 5778889999999999999999999999998889999888888
Q ss_pred EEEEC
Q 046966 153 TYVLY 157 (299)
Q Consensus 153 ~~v~~ 157 (299)
+....
T Consensus 259 VelgR 263 (558)
T KOG0882|consen 259 VELGR 263 (558)
T ss_pred eehhh
Confidence 87754
No 116
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.86 E-value=5.5e-06 Score=76.54 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=74.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..+++|+-.|+...++-+|.++|+.+|.|..++++.|+.+++++|.+||+|.+.++...|+ .|.|..+.|.+|.|+.+.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4578999999999999999999999999999999999999999999999999999999999 789999999999998765
Q ss_pred C
Q 046966 290 S 290 (299)
Q Consensus 290 ~ 290 (299)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 3
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.86 E-value=6.1e-05 Score=68.96 Aligned_cols=79 Identities=25% Similarity=0.277 Sum_probs=66.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.....|-+.+|||++|+++|.++|+.++ |.++.+.+ .+|+..|=|||+|.+.+++++|++. +...++.|-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 3456788899999999999999999985 56644444 5899999999999999999999975 777888999999877
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
.+.
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 554
No 118
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.83 E-value=5.9e-05 Score=52.80 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=46.9
Q ss_pred ceEEEEcCCCCCCHHH----HHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 212 NVLFVCQLNPVTEDED----LHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~----L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
..|+|.|||.+.+... |+.++..+| .|..+ +.+-|++-|.+.+.|.+|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999888654 556666776 45443 12589999999999999999999999999999999
Q ss_pred ecC
Q 046966 287 FSQ 289 (299)
Q Consensus 287 ~a~ 289 (299)
|+.
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 119
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.79 E-value=2e-05 Score=65.08 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=53.9
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
-.++||.||.++++|++|+.+|+.|.....++|-. ....+.||++|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 45799999999999999999999998766655522 223468999999999999999999998754
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.76 E-value=1.9e-05 Score=69.49 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=76.1
Q ss_pred CCCceEE-EEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 209 PPDNVLF-VCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~-v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+..++| +++|+.++++++|+..|..+|.|..+++..++.++.++|||++.|.....+..++.. +...+.++.+.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3456666 999999999999999999999999999999999999999999999999999999877 78889999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
..++..
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 887743
No 121
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=0.00015 Score=63.37 Aligned_cols=82 Identities=17% Similarity=0.421 Sum_probs=63.0
Q ss_pred CCceEEEEcCCCCCCHHH----H--HHhcccCCCeEEEEEeecCCCC-Ceee-EE-EEEecCHHHHHHHHHHhCCceeCC
Q 046966 210 PDNVLFVCQLNPVTEDED----L--HVIFSQFGTVVSAEILRDYRTG-ESLC-YA-FVEFEKREACEQAYFKMNNALIDD 280 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~----L--~~~f~~~G~i~~~~~~~~~~~g-~~~g-~a-fv~f~~~~~a~~al~~l~~~~i~g 280 (299)
...-+||-+|++.+..++ | .++|++||.|.++-+.+...+- ...+ +| ||+|.+.++|.+|+...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 356799999988876554 3 4789999999988775532111 1122 22 999999999999999999999999
Q ss_pred eEEEEEecCCc
Q 046966 281 RRICVDFSQSV 291 (299)
Q Consensus 281 ~~l~v~~a~~~ 291 (299)
|.|+..|-..+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999986643
No 122
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.68 E-value=3.6e-05 Score=67.46 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=67.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCC--CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFG--TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....++|||||-|+++++||.+.+...| .+..++...++.+|+++|||++...+..+.++.++.|-...|.|+.=.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999998888766 45677778888999999999999999999999999999999998765544
No 123
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.67 E-value=5e-05 Score=67.03 Aligned_cols=85 Identities=21% Similarity=0.205 Sum_probs=76.3
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeE--------EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVV--------SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
.....++||-+||..+++++|.++|.++|.|. .+.+-+++.|+..+|-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999885 3567788899999999999999999999999999999999
Q ss_pred CeEEEEEecCCcc
Q 046966 280 DRRICVDFSQSVS 292 (299)
Q Consensus 280 g~~l~v~~a~~~~ 292 (299)
+..|+|..|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887554
No 124
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.60 E-value=0.00028 Score=58.62 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=68.5
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICV 285 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v 285 (299)
..++...+|+.|||..++.+.|..+|.+|.....++++... .+.|||+|.+...+..|...+++..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35778899999999999999999999999999999987652 469999999999999999999999887 777888
Q ss_pred EecC
Q 046966 286 DFSQ 289 (299)
Q Consensus 286 ~~a~ 289 (299)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 7764
No 125
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.59 E-value=6.7e-05 Score=63.23 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=60.8
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCC--------CCeeeE----EEEEecCHHHHHHHHHHhCCce
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRT--------GESLCY----AFVEFEKREACEQAYFKMNNAL 277 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~--------g~~~g~----afv~f~~~~~a~~al~~l~~~~ 277 (299)
....||++++|+.+...-|+.+|+.||.|-.+.+.....+ |.+..+ |+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999988877654333 222222 6799999999999999999999
Q ss_pred eCCeE
Q 046966 278 IDDRR 282 (299)
Q Consensus 278 i~g~~ 282 (299)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99976
No 126
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.55 E-value=0.0002 Score=65.71 Aligned_cols=79 Identities=28% Similarity=0.274 Sum_probs=64.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS-AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.....|-+.+||+.++++||.++|+..--+.. +.++.+ ..+++.|=|||+|.+.+.|++|+.. |...|+.|-|.|.-
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35678999999999999999999987654444 556666 4678999999999999999999965 77778888888865
Q ss_pred cC
Q 046966 288 SQ 289 (299)
Q Consensus 288 a~ 289 (299)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 43
No 127
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.43 E-value=0.00046 Score=51.50 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=43.2
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc-----eeCCeEEEEE
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA-----LIDDRRICVD 286 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~-----~i~g~~l~v~ 286 (299)
+.|.+.+++..++.++|++.|++||.|..|.+... . .-|||-|.+.+.|++|+..+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----D--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----C--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57889999999999999999999999998877543 1 37899999999999999766544 4556555555
Q ss_pred e
Q 046966 287 F 287 (299)
Q Consensus 287 ~ 287 (299)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 128
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.42 E-value=0.00032 Score=62.96 Aligned_cols=80 Identities=26% Similarity=0.395 Sum_probs=67.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v~ 286 (299)
-++..++.+.|+|.+++|++|+..|..-|...+.... -++.+-+|++++.+.+.|-.|+..++.+.++ +..|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 4678899999999999999999999988876655432 2345569999999999999999999999988 4589999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
|+++.
T Consensus 487 FSks~ 491 (492)
T KOG1190|consen 487 FSKST 491 (492)
T ss_pred eeccc
Confidence 98863
No 129
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.0001 Score=61.59 Aligned_cols=71 Identities=28% Similarity=0.371 Sum_probs=62.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
..+.+.+.+++..+.+.+|.+.|.++|.+....+ ..+++||+|...+++.+|+..|++..+.++.|.+...
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 4678999999999999999999999999854333 3469999999999999999999999999999999543
No 130
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.27 E-value=0.0026 Score=56.11 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=63.9
Q ss_pred CCCceEEEEcCCC----CCC-------HHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce
Q 046966 209 PPDNVLFVCQLNP----VTE-------DEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL 277 (299)
Q Consensus 209 ~~~~~v~v~nL~~----~~~-------e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 277 (299)
...++|.+.|+=. ..+ +++|.+-..+||.|.++.+.-. .+.|.+-|.|.+.+.|..|++.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4577888888721 222 3566677889999999876432 256899999999999999999999999
Q ss_pred eCCeEEEEEecCCccc
Q 046966 278 IDDRRICVDFSQSVSK 293 (299)
Q Consensus 278 i~g~~l~v~~a~~~~~ 293 (299)
++||.|.......+.+
T Consensus 339 fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKTK 354 (382)
T ss_pred ecceEEEEEEeCCcce
Confidence 9999999998776543
No 131
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00065 Score=63.34 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=63.4
Q ss_pred CCCceEEEEcCCCCCC------HHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-Ce
Q 046966 209 PPDNVLFVCQLNPVTE------DEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DR 281 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~------e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~ 281 (299)
.-...|+|.|.|---. ..-|..+|+++|.+....++.+..+| ++||.|++|.+..+|+.|++.|||+.++ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3467899999986432 23467889999999999998886555 9999999999999999999999999887 66
Q ss_pred EEEEEe
Q 046966 282 RICVDF 287 (299)
Q Consensus 282 ~l~v~~ 287 (299)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666654
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.15 E-value=0.0036 Score=55.72 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred CCCCCceEEEEcC--CCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC--CeE
Q 046966 207 VKPPDNVLFVCQL--NPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID--DRR 282 (299)
Q Consensus 207 ~~~~~~~v~v~nL--~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~--g~~ 282 (299)
...++..|.+.-| -+.++-+-|..+....|.|.++-|.+. +|. .|.|+|.+.+.|++|.++|||..|. -..
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccccee
Confidence 3445666665544 456889999999999999999988764 554 7899999999999999999999875 678
Q ss_pred EEEEecCCcc
Q 046966 283 ICVDFSQSVS 292 (299)
Q Consensus 283 l~v~~a~~~~ 292 (299)
|+|+||+|.+
T Consensus 191 LKIeyAkP~r 200 (494)
T KOG1456|consen 191 LKIEYAKPTR 200 (494)
T ss_pred EEEEecCcce
Confidence 9999999875
No 133
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0024 Score=59.14 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=60.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcc-cCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFS-QFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFK 272 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~ 272 (299)
-.+.+|||||+||.-++-++|..+|. -||.|..+.|-.|++-+..+|-|-|+|.+-.+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 35788999999999999999999998 799999999999988889999999999999999999865
No 134
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.87 E-value=0.008 Score=53.61 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=69.3
Q ss_pred CCCCCceEEEEcCCCC-CCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 207 VKPPDNVLFVCQLNPV-TEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~-~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...+++.+.|-+|... ++-+.|..+|-.||.|.+++.++.+ .|-|.|++.+..+.++|+..||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3457889999999775 5667899999999999999998863 367999999999999999999999999999999
Q ss_pred EecCC
Q 046966 286 DFSQS 290 (299)
Q Consensus 286 ~~a~~ 290 (299)
.+++.
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 98874
No 135
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0045 Score=49.96 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
.+...|.|.+||++.++++|++...+-|.+....+.+| |++.|+|...++.+-|+..|....+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 45678999999999999999999999999999988877 48899999999999999998887654
No 136
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.79 E-value=0.0086 Score=46.87 Aligned_cols=74 Identities=23% Similarity=0.457 Sum_probs=52.0
Q ss_pred CCCCceEEEEcCCC------CCCH---HHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee
Q 046966 208 KPPDNVLFVCQLNP------VTED---EDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI 278 (299)
Q Consensus 208 ~~~~~~v~v~nL~~------~~~e---~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i 278 (299)
.|+..+|.|.-+.+ ...+ .+|.+.|..||.+.-++.+-+ --+|+|.+.++|.+|+ .|+|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE
Confidence 46788888876662 2222 256778889998877776544 3589999999999999 5799999
Q ss_pred CCeEEEEEecCC
Q 046966 279 DDRRICVDFSQS 290 (299)
Q Consensus 279 ~g~~l~v~~a~~ 290 (299)
+|+.|+|+...|
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998665
No 137
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.005 Score=57.79 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=53.6
Q ss_pred HHHHHhcccCCCeEEEEEeec-C--CCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 226 EDLHVIFSQFGTVVSAEILRD-Y--RTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 226 ~~L~~~f~~~G~i~~~~~~~~-~--~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
++++.-+++||.|..|.++++ . ...-..|--||+|.+.+++++|.++|+|..+.||.+...|-...
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 345566789999999998876 2 22234566799999999999999999999999999999987643
No 138
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.69 E-value=0.0044 Score=40.03 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=40.0
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHH
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAY 270 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al 270 (299)
+.|-|.+.++...+. +...|.+||+|..+.+.. ..-..++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 456788888776644 555888999999987752 2348899999999999985
No 139
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.65 E-value=0.0094 Score=55.42 Aligned_cols=99 Identities=18% Similarity=0.312 Sum_probs=65.7
Q ss_pred eEEEEecCCCChHHHHHHHHhhhCCCc----CCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCCCce
Q 046966 11 DIVIDLFVDKCPRTTNNFLQHCKNKYY----NGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHDKVG 86 (299)
Q Consensus 11 ~i~ieL~~~~~P~~~~nF~~l~~~~~y----~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G 86 (299)
.+.+||. ..+|.++++|+.+.+.|.+ .-.+|-+ ...+| +...+.| + +....+|
T Consensus 202 y~evE~~-~~~p~s~EH~la~~~~G~~~Vd~~tsTfi~---d~~L~----------------g~~~p~E-n--~~~R~rG 258 (503)
T TIGR03268 202 YVEVELD-PNAPVSVEHFLALMEDGTFRVDYRTSTFIS---DDSLR----------------GLDKPEE-N--IEKRRRG 258 (503)
T ss_pred EEEEEEc-CCCChhHHHHHHHHhCCeEEEeeeecceEe---ccccc----------------CccCCcc-c--cCcccce
Confidence 4667765 5789999999999999853 2222211 11111 1123444 2 2234789
Q ss_pred EEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhc
Q 046966 87 TVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 87 ~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~ 136 (299)
+|.+.+.|.. ...-||.-.+-++ .-.|+|+|+|+.||++++--+..
T Consensus 259 tVTVRn~G~G--~G~VYIYredr~s--s~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 259 AVTVRNSGVG--EGRVYIYREDRPS--SLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred eEEEEeeccC--ceeEEEEcCCCCC--CcccceeEEEecceeeeecccCC
Confidence 9999998753 3578998887433 34699999999999999876544
No 140
>PRK00969 hypothetical protein; Provisional
Probab=96.55 E-value=0.01 Score=55.27 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=65.5
Q ss_pred eEEEEecCCCChHHHHHHHHhhhCCCc----CCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCCCce
Q 046966 11 DIVIDLFVDKCPRTTNNFLQHCKNKYY----NGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHDKVG 86 (299)
Q Consensus 11 ~i~ieL~~~~~P~~~~nF~~l~~~~~y----~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G 86 (299)
.+.+||. ..+|.++++|+.+.+.|.+ .-.+|-+ ...+| + ...+.| + +....+|
T Consensus 205 y~eve~~-~~~p~s~EH~la~~~~G~f~Vd~~tstfI~---d~~L~---------------g-~~~p~E-n--~~~R~~G 261 (508)
T PRK00969 205 YVEVELD-PGAPKSVEHFLALLEDGTFEVDFETSTFIA---DDRLQ---------------G-LKIPEE-N--FEPRRRG 261 (508)
T ss_pred EEEEEEc-CCCCchHHHHHHHHhCCeEEEeeeecceEe---ecccc---------------C-ccCCcc-c--cCccccc
Confidence 3566776 4689999999999999853 2222211 11111 1 123444 2 2233789
Q ss_pred EEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhc
Q 046966 87 TVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 87 ~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~ 136 (299)
+|.+.+.|.+ ...-||.-.+-++ .-.|+|+|+|+.||++++--...
T Consensus 262 tVTVRt~G~g--~G~vYIyredr~s--s~sHtvVG~V~~GiELi~~a~~G 307 (508)
T PRK00969 262 TVTVRTAGVG--VGKVYIYREDRPS--SLSHTVVGRVTHGIELIDFAKEG 307 (508)
T ss_pred eEEEEeeccC--ceeEEEECCCCCC--CccceeEEEEecceeeeecccCC
Confidence 9999998753 4578999887433 34699999999999999876544
No 141
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.47 E-value=0.017 Score=42.58 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=51.0
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEE-EeecC------CCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCe-E
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAE-ILRDY------RTGESLCYAFVEFEKREACEQAYFKMNNALIDDR-R 282 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~-~~~~~------~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~-~ 282 (299)
.+-|.|-+.|+. .-..+.+.|++||.|.+.. +.++. ........-.|.|.++.+|.+||.. ||..++|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456888899887 4466788999999998764 11100 0011234778999999999999965 99999875 5
Q ss_pred EEEEecCCc
Q 046966 283 ICVDFSQSV 291 (299)
Q Consensus 283 l~v~~a~~~ 291 (299)
+-|.++++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 558877543
No 142
>PRK00969 hypothetical protein; Provisional
Probab=96.47 E-value=0.03 Score=52.31 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=74.4
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
...|.|+.|.|+|||. ....++.-|+..++. |.|...+=..+ .-+.+|-...+ +... ..-.
T Consensus 52 ~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~-~~vAfGp~~s~------------l~p~--~~~~ 112 (508)
T PRK00969 52 KYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSR-SAVAFGPFESD------------LEPS--REEY 112 (508)
T ss_pred eEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccc-cceeEcccccC------------cccc--cCcc
Confidence 3578999999999999 555667777777765 56666654323 33334432211 1111 1111
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCC-CceEEEEeecCHHHHHHHHhc
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDE-KHTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~-~~~vfG~V~~G~~vl~~i~~~ 136 (299)
...++-|.+.-.|-+...+.+.|+..+....+.- .--+||+||.|..+|+++...
T Consensus 113 ~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 113 EYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence 2256788888888777778888887764222221 128999999999999999654
No 143
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.018 Score=53.51 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCC---CCCeee---EEEEEecCHHHHHHHHHHhC
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYR---TGESLC---YAFVEFEKREACEQAYFKMN 274 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~---~g~~~g---~afv~f~~~~~a~~al~~l~ 274 (299)
..-.++||||+||++++|+.|...|..||.+. +.++.... --..+| |+|+.|+++.++..-+.+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34578999999999999999999999999853 44542111 112356 99999999988887766543
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.37 E-value=0.0026 Score=57.53 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc-eeCCeEEEEEecCC
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA-LIDDRRICVDFSQS 290 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~-~i~g~~l~v~~a~~ 290 (299)
..+|++||.+.++..+|..+|+.----.+-.++ ...||+||.+.+..+|.+|++.++|. .+.|+++.+.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 368999999999999999999743100011111 12479999999999999999999996 47899999999888
Q ss_pred cccc
Q 046966 291 VSKI 294 (299)
Q Consensus 291 ~~~~ 294 (299)
++++
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 7543
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.35 E-value=0.013 Score=56.37 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeE-EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVV-SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
+.|-+.|+|+.++-+||-++|..|-.+- +|.+-++ ..|+..|-+-|.|++.++|.+|...|++..|..|.+.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788899999999999999999996554 5555554 6799999999999999999999999999999999998864
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.25 E-value=0.0059 Score=54.60 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCe-E--EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTV-V--SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i-~--~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
+..+|.+.+||+..+.++|-.+|..|..- . -+.++.+ ..|+..|-|||+|.+.++|..|....+.+....|-|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 35689999999999999999999988642 2 3667776 678999999999999999999998888777778888876
Q ss_pred ecC
Q 046966 287 FSQ 289 (299)
Q Consensus 287 ~a~ 289 (299)
-+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 543
No 147
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.22 E-value=0.06 Score=50.24 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=74.2
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
...|.|+.|.|+|+|-. ...+++-|+..++. |-|...+=..+. -+.+|-...+ +... ..-.
T Consensus 48 ~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~-~vAfGp~~sd------------l~p~--~~~~ 108 (503)
T TIGR03268 48 EYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQ-EVAFGPFPSD------------LEPS--REPS 108 (503)
T ss_pred eEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchh-heeeCcccCC------------cccc--CCcc
Confidence 35789999999999993 55577777777665 455555433222 2333322211 1111 1111
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCC--CCceEEEEeecCHHHHHHHHhc
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLD--EKHTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld--~~~~vfG~V~~G~~vl~~i~~~ 136 (299)
...++-|.+.-+|-+...+.+.|+..+....+. ...-+||+||.|..+|+++...
T Consensus 109 ~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~ 165 (503)
T TIGR03268 109 EYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDG 165 (503)
T ss_pred eeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCC
Confidence 235678888888877778888888876432221 1468999999999999999654
No 148
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.08 E-value=0.0065 Score=59.83 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=66.9
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID--DRRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~--g~~l~v~ 286 (299)
.+.+.+|+++|++++....|...|..||.|..+.+-. | .-||+|+|.+...++.|++.|.|..|+ .++++|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 4567899999999999999999999999998876522 2 249999999999999999999999998 4779999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
|+.+.
T Consensus 527 la~~~ 531 (975)
T KOG0112|consen 527 LASPP 531 (975)
T ss_pred cccCC
Confidence 98864
No 149
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.96 E-value=0.0074 Score=54.75 Aligned_cols=68 Identities=26% Similarity=0.300 Sum_probs=56.1
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeec---CCC--CC--------eeeEEEEEecCHHHHHHHHHHhCC
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRD---YRT--GE--------SLCYAFVEFEKREACEQAYFKMNN 275 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~---~~~--g~--------~~g~afv~f~~~~~a~~al~~l~~ 275 (299)
-+.++|.+-|||.+-.-+-|.++|+.+|.|..|+|... +.+ +. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999888999999999999999998765 222 11 245789999999999999988765
Q ss_pred c
Q 046966 276 A 276 (299)
Q Consensus 276 ~ 276 (299)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.83 E-value=0.0038 Score=61.09 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=71.2
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
...++|.|+|+..|.+.|+.++..+|.+.+.+++.. ..|+.+|.|++.|.+..++.+++..+....+.-+.+.|..++|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 567999999999999999999999999999998887 5899999999999999999999988777777777788888666
Q ss_pred c
Q 046966 291 V 291 (299)
Q Consensus 291 ~ 291 (299)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 151
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.81 E-value=0.027 Score=48.75 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=53.4
Q ss_pred HHHHHHhcccCCCeEEEEEeecCCCCCeeeE-EEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 225 DEDLHVIFSQFGTVVSAEILRDYRTGESLCY-AFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 225 e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
++++++-+++||.|..|-|...+......-. -||+|...++|.+|+-.|||..++||.++..|-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3567788899999999988776544433333 4999999999999999999999999999988765
No 152
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.44 E-value=0.0059 Score=51.82 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=49.2
Q ss_pred HHHHhcc-cCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 227 DLHVIFS-QFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 227 ~L~~~f~-~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
++...|+ +||+|+++.+-.+ ..-...|-.||.|...++|++|+..||+..+.|++|...++-
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3333444 8999998765544 233457888999999999999999999999999999988754
No 153
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.059 Score=48.62 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=64.2
Q ss_pred eEEEEecCCCChHHHHHHHHhhhCCCc----CCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCCCce
Q 046966 11 DIVIDLFVDKCPRTTNNFLQHCKNKYY----NGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHDKVG 86 (299)
Q Consensus 11 ~i~ieL~~~~~P~~~~nF~~l~~~~~y----~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~G 86 (299)
.+.+||- ..+|+++++|+.|.+.|.+ .-.+|.-. ..+| . ..++.| +..+ ..+|
T Consensus 204 y~eve~s-~nsP~saEH~lalmedG~lri~~~tntfis~---~~lq---------------~-~~~~~e-n~d~--RerG 260 (512)
T COG4070 204 YFEVELS-RNSPKSAEHFLALMEDGTLRIDVTTNTFISD---DTLQ---------------E-EKVPEE-NFDL--RERG 260 (512)
T ss_pred EEEEEeC-CCCchhHHHHHHHhhcceEEEEEeccceeec---cccc---------------c-ccCChh-hhhh--hhcc
Confidence 4667776 4579999999999998742 22222111 0011 1 113444 3333 3689
Q ss_pred EEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhc
Q 046966 87 TVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 87 ~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~ 136 (299)
.++..|.|-+ ...-||.-.+-.+.+ .|.+.|+|+.||+.+|-..++
T Consensus 261 ~iTvRn~Gvg--eGrvYIyRedR~ss~--sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 261 AITVRNVGVG--EGRVYIYREDRPSSL--SHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred eEEEEeeecc--cceEEEEecCCCCcc--ccceeeeeecceEEEEecccC
Confidence 9999988753 357888887744443 589999999999999876444
No 154
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.16 E-value=0.03 Score=52.93 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=64.6
Q ss_pred CCCCCCCCCceEEEEcCCCCCCHHHHHHhccc-CCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee---
Q 046966 203 PDADVKPPDNVLFVCQLNPVTEDEDLHVIFSQ-FGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI--- 278 (299)
Q Consensus 203 ~~~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i--- 278 (299)
++.......+.|||.||-.-+|.-+|+.+++. .|.|... || | +-+..+||.|.+.++|-....+|||..+
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 34445567889999999999999999999985 4555554 33 2 2345789999999999999999999764
Q ss_pred CCeEEEEEecCC
Q 046966 279 DDRRICVDFSQS 290 (299)
Q Consensus 279 ~g~~l~v~~a~~ 290 (299)
+++.|.+.|...
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 578899998764
No 155
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.12 E-value=0.012 Score=52.04 Aligned_cols=81 Identities=19% Similarity=0.339 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCCCHH-HHH--HhcccCCCeEEEEEeecCC--CC-CeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 211 DNVLFVCQLNPVTEDE-DLH--VIFSQFGTVVSAEILRDYR--TG-ESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~-~L~--~~f~~~G~i~~~~~~~~~~--~g-~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
...+||-+|+.....+ .|+ +.|++||.|.++.+..++. .+ ....-++|+|...++|.+||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678888898776544 443 6799999999998877652 11 1123379999999999999999999999999988
Q ss_pred EEecCCc
Q 046966 285 VDFSQSV 291 (299)
Q Consensus 285 v~~a~~~ 291 (299)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877654
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.12 E-value=0.18 Score=35.57 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=43.0
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN 275 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~ 275 (299)
..+..+|+ .|..+...||..+|+.||.| .|.++.|. -|||...+.+.|..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 35666776 99999999999999999986 46666662 799999999999999887753
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.88 E-value=0.0019 Score=63.17 Aligned_cols=68 Identities=28% Similarity=0.314 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
.++|+.||++.+.+.+|...|..+|.+..+++.-...+++.+|+||+.|...+.+.+|+....++.++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 46899999999999999999999999888777655568899999999999999999999665544443
No 158
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.53 E-value=0.062 Score=48.40 Aligned_cols=75 Identities=16% Similarity=0.338 Sum_probs=59.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecC---CCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDY---RTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...|.|.||.+.++.++++.+|+..|.|..++|.-.. .-....-.+||.|.+...+..|. .|.++.+-++.|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEE
Confidence 3489999999999999999999999999998876532 22344568999999999999996 567777666666554
No 159
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.51 E-value=0.047 Score=49.00 Aligned_cols=70 Identities=21% Similarity=0.158 Sum_probs=51.8
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccC----CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQF----GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
-.|...+||+++++.++.++|.+- |....+..+.. -.|+..|=|||.|..+++|+.|+.. |...++-|-|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 356678999999999999999632 23345544444 4788999999999999999999965 4444444433
No 160
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.50 E-value=0.22 Score=33.12 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=44.3
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccC---CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQF---GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKM 273 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l 273 (299)
..+|+|.++. +++.++++.+|..| .....+.|+-|. -+-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 5689999986 47788999999988 234688888873 4679999999999999764
No 161
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=94.40 E-value=0.34 Score=38.15 Aligned_cols=116 Identities=17% Similarity=0.083 Sum_probs=57.9
Q ss_pred EEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCc--EEEecCCCCCCCCCCCCCCCcccccccccCCCC
Q 046966 5 IETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDF--IAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 5 ~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+..--.++.+|..+.||+||+.|.++. =|.+..+|-...|. ++.-++... .....|+.+..+
T Consensus 3 ~~~~g~~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~~P- 67 (147)
T PF12903_consen 3 LTKRGVSFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTVTP- 67 (147)
T ss_dssp ETTTTEEEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEESS--
T ss_pred EecCCeEEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcccC-
Confidence 3334457899999999999999999987 34455555433332 233333221 112334344433
Q ss_pred CCceEEEEEc---CCCC--CC-cceEEEEecCCCCCCCCC-----ceEEEEeecCHHHHHHHHhc
Q 046966 83 DKVGTVGMAS---AGRD--LN-ASQFYITLRDNLHYLDEK-----HTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 83 ~~~G~l~~~~---~~~~--~~-~s~FfI~~~~~~~~ld~~-----~~vfG~V~~G~~vl~~i~~~ 136 (299)
.+|-|.+.= ...+ .. -++.-|.++-+.-.+.++ -.+|++|++|++-+.++.+.
T Consensus 68 -~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~~ 131 (147)
T PF12903_consen 68 -IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACRD 131 (147)
T ss_dssp --TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHHH
T ss_pred -CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHHH
Confidence 457777761 0001 11 245555555332222211 36999999999988887553
No 162
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.96 E-value=0.041 Score=53.02 Aligned_cols=80 Identities=25% Similarity=0.054 Sum_probs=65.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS-AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+..|||..||..+++.++..+|...-.|+. |.|...+ +++.++-|||.|...+++..|...-+.+.++.|.|+|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345779999999999999999999987666665 6666653 67888999999999888888887667777888999987
Q ss_pred ec
Q 046966 287 FS 288 (299)
Q Consensus 287 ~a 288 (299)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 53
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.95 E-value=0.073 Score=45.34 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=54.7
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN 274 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 274 (299)
..|||.||..-++.+.|...|+.||.+....+..| ..++..+=++|.|...-.+.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999997766666 568888899999999999999987763
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.88 E-value=0.015 Score=57.35 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=67.5
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
+....+.+||+|||+..+++.+|+..|..+|.+.++.+-..+ -+...-|||+.|.+.+.+.+|...+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 334457899999999999999999999999999998876542 3444569999999999999999999998887656666
Q ss_pred Eec
Q 046966 286 DFS 288 (299)
Q Consensus 286 ~~a 288 (299)
.+.
T Consensus 446 glG 448 (975)
T KOG0112|consen 446 GLG 448 (975)
T ss_pred ccc
Confidence 655
No 165
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.27 E-value=0.31 Score=39.89 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCCCCHHHHHHhccc-CCCe---EEEE--EeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC---
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQ-FGTV---VSAE--ILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD--- 280 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~-~G~i---~~~~--~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g--- 280 (299)
...+|.|.+||++.+++++.+.+.. ++.- .... ..........-.-|||.|.+.+++..-...++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4678999999999999999997776 6654 2222 11111111223568999999999999999999987642
Q ss_pred --eEEEEEecCC
Q 046966 281 --RRICVDFSQS 290 (299)
Q Consensus 281 --~~l~v~~a~~ 290 (299)
.+..|.+|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3455666554
No 166
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.43 E-value=2.1 Score=32.11 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=47.2
Q ss_pred eEEEEcCCCCCCHHHHHHhcccC-CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQF-GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
.+.+...|+.++-++|..+.+.+ ..|..++++++ ...++-.+.+.|.+.++|..-...+||+.++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444455555556676555555 35668888887 3346778899999999999999999998866
No 167
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.72 E-value=0.84 Score=35.62 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCCCceEEEEcCCCCCCH-HHHHH---hcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 208 KPPDNVLFVCQLNPVTED-EDLHV---IFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e-~~L~~---~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
.++-.+|.|.=|..++.. +||+. .++.||+|.++.+. |+ --|.|.|.+..+|-+|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 456778888877776653 45554 45789999998763 32 3689999999999999999876 4566677
Q ss_pred EEEec
Q 046966 284 CVDFS 288 (299)
Q Consensus 284 ~v~~a 288 (299)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 76663
No 168
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.50 E-value=0.22 Score=44.05 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=66.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
...++.|++++.+.+.+.+...++...|....+..........++|++++.|...+.+..|+.....+.+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35788999999999999988899999998877777665577889999999999999999999765555666766665554
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 169
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.17 E-value=0.47 Score=44.79 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=47.9
Q ss_pred CCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce---eC-CeEEEEEecCCccccc
Q 046966 235 FGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL---ID-DRRICVDFSQSVSKIW 295 (299)
Q Consensus 235 ~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~---i~-g~~l~v~~a~~~~~~~ 295 (299)
.|.-..+.++.|-.+....|||||.|-+.+++.++.+++||+. ++ .+.+.+.||+...+.|
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~ 477 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEA 477 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHH
Confidence 5555667777776777788999999999999999999999986 33 4556788888665543
No 170
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.83 E-value=1 Score=31.03 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=33.9
Q ss_pred CCCHHHHHHhcccCCCe-----EEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 222 VTEDEDLHVIFSQFGTV-----VSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 222 ~~~e~~L~~~f~~~G~i-----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.++..+|..++..-+.+ -.+.+..+ |+||+-.. +.|..++..|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46777887777655433 46666444 88999874 5888999999999999999999865
No 171
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.62 E-value=0.22 Score=47.89 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=62.8
Q ss_pred CCCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 205 ADVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 205 ~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
....++..++||+|+...+..+-++.++..+|.|.++.... |||..|.......+|+..++...++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34456788999999999999999999999999887764322 999999999999999999999889888876
Q ss_pred EEe
Q 046966 285 VDF 287 (299)
Q Consensus 285 v~~ 287 (299)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 654
No 172
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.32 E-value=0.95 Score=37.31 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=44.2
Q ss_pred CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEecCCc
Q 046966 224 EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN--NALIDDRRICVDFSQSV 291 (299)
Q Consensus 224 ~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~--~~~i~g~~l~v~~a~~~ 291 (299)
..+.|+++|..++.+.....+.. -+-..|.|.+.+.|.+|...|+ +..+.|..+++-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999998887665543 2245799999999999999999 99999999999998644
No 173
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.31 E-value=1.7 Score=29.34 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=42.3
Q ss_pred CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 222 VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 222 ~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
.++-++++.-+..|+- .++..+ .+| | ||.|.+..+|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-~tG----f-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-RTG----F-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-CCE----E-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3567889999999863 234444 233 3 89999999999999999999988877654
No 174
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=87.39 E-value=6.1 Score=36.13 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred EEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCC
Q 046966 3 VLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 3 v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
-.|.|+.|.|.|+|-... .+...|...|+. |-|+.++-..|.-+.. |-.. ..-|....-..
T Consensus 53 ~~IktttG~i~ielt~~~--~e~k~~~e~yke--l~~~~i~Wts~~eva~-Gp~~--------------~dle~s~e~~e 113 (512)
T COG4070 53 YRIKTTTGEIRIELTDES--VEGKRWAEHYKE--LEGTYIRWTSPEEVAF-GPFE--------------ADLEPSRETGE 113 (512)
T ss_pred EEEEccCCcEEEEecccc--chhHHHHHHHHh--ccCceEEecChhHccc-cccc--------------ccccccccccc
Confidence 468899999999999633 356778888877 6677666554443332 2111 11111111111
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcc
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAV 137 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~ 137 (299)
..+-.+.|.-+|-+...+-|.|+-....-.+.-.--..|+|+.|-.+++++....
T Consensus 114 f~~~dvvl~l~g~dpdethiiiskkr~~~~Yg~~~d~~G~Vv~Gr~lidrL~~gd 168 (512)
T COG4070 114 FEAFDVVLSLSGFDPDETHIIISKKRHVAEYGAPEDIHGRVVGGRNLIDRLSRGD 168 (512)
T ss_pred cccceEEEEccCCCCCcceEEEEecceeeEecCCccccceEecchhhhhHhccCC
Confidence 2334566666665656677888776532222222345689999999999996653
No 175
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=86.64 E-value=4.2 Score=30.98 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=58.6
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhh----hCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccc-cc
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHC----KNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFV-DE 75 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~----~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~-~e 75 (299)
|.+.|+-....+.++|+.. .|++.|++.. +-..|.+-.++.. |-. .+ ++
T Consensus 1 mkI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~E~y~~~-p~~----------------------l~~~~ 54 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGNEKYFSL-PLK----------------------LPTEE 54 (120)
T ss_dssp EEEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTTEEEEE--S---------------------------SS
T ss_pred CeEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCceEEEeC-CCC----------------------CCccc
Confidence 7788888989999999977 7899998876 1122422222221 110 01 11
Q ss_pred cccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCC-------CCCCCceEEEEeecCHHHHHHHHhc
Q 046966 76 IRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLH-------YLDEKHTIFGEVAEGLETLTRINQA 136 (299)
Q Consensus 76 ~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~-------~ld~~~~vfG~V~~G~~vl~~i~~~ 136 (299)
..+- ....|.|+.-..+ ..|.|-+++ .+ .+-....++|+|++|.+.+..+...
T Consensus 55 -~~~~-~~~~GDi~Yw~pg-----~~l~ifyg~-~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~ 114 (120)
T PF04126_consen 55 -NPRS-SVEAGDIAYWPPG-----GALAIFYGD-TPISEGGEIRPASPVNVLGRIVSDLENLKEVKGG 114 (120)
T ss_dssp -SEES-SB-TTEEEEECCC-----TEEEEESS---TT--TTSB--SSSEEEEEEEEC-GGGGGG--TT
T ss_pred -Cccc-cccCceEEEeCCC-----CEEEEEecC-cccccccccccCCcceEEEEECCCHHHHhhCCCC
Confidence 1111 1256888886543 358888876 33 3445688999999999999888443
No 176
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=85.45 E-value=0.57 Score=46.47 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=61.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEec
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID--DRRICVDFS 288 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~--g~~l~v~~a 288 (299)
..+.++.|.+-+.+-..|..+|..||.+.+++..++- -.|.|.|...+.|-.|+.+|+|.++. |-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3455556666677888899999999999998776663 37899999999999999999998754 888999998
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
+.-
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 864
No 177
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.45 E-value=0.51 Score=43.79 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=53.2
Q ss_pred EEcCCCCC-CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 216 VCQLNPVT-EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 216 v~nL~~~~-~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
+.-.|+.. +-++|...|.+||.|..|.+-.. .--|.|+|.+..+|-.|. ..++..|++|.|+|.|-++
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 33344444 34789999999999999876443 236889999999997776 4589999999999999776
No 178
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.44 E-value=6.2 Score=34.75 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=48.3
Q ss_pred EEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE-EEEecCC
Q 046966 214 LFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI-CVDFSQS 290 (299)
Q Consensus 214 v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l-~v~~a~~ 290 (299)
|-|.++|+.-. .-+-.+|.+||.|++.... .+| .+-+|.|.+..+|++||. .+|..|+|-.+ -|.-+..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC---CCC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 44557776533 4566789999999876432 223 377999999999999995 49999887653 3555443
No 179
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=79.71 E-value=6.8 Score=34.20 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCe-EEEEEeecCCCCCeeeEEEEEecCH
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTV-VSAEILRDYRTGESLCYAFVEFEKR 263 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~ 263 (299)
...-|+++||+.++.-.||+..+.+.+.+ .++.| . -++|-+|+-|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K----GHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee--e----cCCcceeEecCCc
Confidence 34569999999999999999999887753 24433 2 2356688888654
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.79 E-value=9.4 Score=35.53 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=56.6
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD 280 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g 280 (299)
+..|.|-.+|..++-.||..+...+- .|..+++++|. -..+=..+|.|.+..+|..-.+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999987664 57789999963 2234457899999999999999999988763
No 181
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=77.90 E-value=3.8 Score=39.03 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=52.8
Q ss_pred CceEEEEcCCCCCCHHHHHHhccc--CCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQ--FGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN--ALIDDRRICVD 286 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~i~g~~l~v~ 286 (299)
.|.|.+.-+|..+..++++.+|.. +-.+.+|..-.+ . -=||+|.+..+|+.|.+.|.. +.|.|++|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~-----nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 577888999999999999999964 667777766443 1 138999999999999877654 34666666554
Q ss_pred e
Q 046966 287 F 287 (299)
Q Consensus 287 ~ 287 (299)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 182
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.32 E-value=1.1e+02 Score=29.65 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCCCC-CCHHHHHHhcccC----CCeEEEEEeecC----------CCCC---------------------
Q 046966 208 KPPDNVLFVCQLNPV-TEDEDLHVIFSQF----GTVVSAEILRDY----------RTGE--------------------- 251 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~-~~e~~L~~~f~~~----G~i~~~~~~~~~----------~~g~--------------------- 251 (299)
....++|-|-||.|. +.-.+|..+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346788999999996 6678999888765 588888753211 1111
Q ss_pred ---------------e-eeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 046966 252 ---------------S-LCYAFVEFEKREACEQAYFKMNNALIDD--RRICVDF 287 (299)
Q Consensus 252 ---------------~-~g~afv~f~~~~~a~~al~~l~~~~i~g--~~l~v~~ 287 (299)
- -=||.|+|.+...|.+..+.+.|..+.. ..|-++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 1368899999999999999999999874 4444443
No 183
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=52.24 E-value=0.69 Score=42.33 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=58.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEE-eecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEI-LRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~-~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+.+-|.|+|+...++.|..++.+||.+..|.. +.++.+- .--|+|...+.+..|+..++|..+....+++.|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 345778899999999999999999999998754 3333222 224688889999999999999999998888876
No 184
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.20 E-value=54 Score=30.26 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCe-EEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTV-VSAEILRDYRTGESLCYAFVEFEKREACEQAYFK 272 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~ 272 (299)
-.+.|=|-++|.....+||-..|..|+.- -.|.|+-|. .+|..|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 46788899999999999999999998753 467777663 799999999999999843
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=43.81 E-value=2.8 Score=38.18 Aligned_cols=76 Identities=12% Similarity=-0.023 Sum_probs=54.6
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++++|++|+..+...++-+.|..+|.+....+-. +...-++-+.|........|+. ++|..+.-+......-.|
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 37899999999999999999999999988776532 3333355588887777788875 477766644444444444
Q ss_pred c
Q 046966 291 V 291 (299)
Q Consensus 291 ~ 291 (299)
.
T Consensus 226 ~ 226 (479)
T KOG4676|consen 226 H 226 (479)
T ss_pred c
Confidence 3
No 186
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.40 E-value=48 Score=22.39 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=40.2
Q ss_pred HHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 226 EDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 226 ~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
++|.+.|...| .+.++.-+..+.+....-.-||+.....+... .++=..++++.+.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 35666666655 56677777766566666677888776544333 3455678888888876554
No 187
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=39.35 E-value=42 Score=22.82 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 226 EDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 226 ~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
++|++.|...| .+..+..+..+.++...-.-+|+.....+... .|+=+.++|+++.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35677777777 56778777776666555666777654432222 455567889997777644
No 188
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=38.62 E-value=1.1e+02 Score=23.55 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=34.6
Q ss_pred EEEEEEcceeEEEEecCCCCh---------HHHHHHHHhhhCC-CcCCceeeEeecC
Q 046966 2 SVLIETSLGDIVIDLFVDKCP---------RTTNNFLQHCKNK-YYNGCLFHNIHKD 48 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P---------~~~~nF~~l~~~~-~y~~~~f~ri~~~ 48 (299)
-|.|+|..||+.+..-.+.++ ++++.|++....- .-+.+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 478999999988887755433 3678899888653 2477888888776
No 189
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.43 E-value=57 Score=24.65 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=29.3
Q ss_pred ceEEEEcCCCC---------CCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCH-HHHHHHH
Q 046966 212 NVLFVCQLNPV---------TEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKR-EACEQAY 270 (299)
Q Consensus 212 ~~v~v~nL~~~---------~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~-~~a~~al 270 (299)
.++.|.|++.. .+.+.|.+.|..|..+. ++...++ .-+.|++.|.|.+. .-...|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 35556666443 34578999999998764 5555663 35789999999754 3444444
No 190
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=35.20 E-value=43 Score=28.10 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHH
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYF 271 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~ 271 (299)
......+++.+++..+....+...|..+|.+....+...........+.++.+.....+.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 3457889999999999999999999999999777665553333344444444444444444443
No 191
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=34.41 E-value=11 Score=31.65 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=50.7
Q ss_pred ceEEEEc----CCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce
Q 046966 212 NVLFVCQ----LNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL 277 (299)
Q Consensus 212 ~~v~v~n----L~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 277 (299)
.+++.|+ |...++++.+...|++-|.+..+++.++. .|+.+.++|+.+........++....+..
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 4455555 66678888999999999999999998884 58889999999987777777776655543
No 192
>PHA03001 putative virion core protein; Provisional
Probab=29.82 E-value=1.7e+02 Score=22.42 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=33.8
Q ss_pred EEEEEEcceeEEEEecCC--CCh------HHHHHHHHhhhCC-CcCCceeeEeecC
Q 046966 2 SVLIETSLGDIVIDLFVD--KCP------RTTNNFLQHCKNK-YYNGCLFHNIHKD 48 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~--~~P------~~~~nF~~l~~~~-~y~~~~f~ri~~~ 48 (299)
-|.++|..|++.+..-.. .+| +.+++|++....- .-+.+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 5 NIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred EEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 478999999987766443 344 4678998887653 2477888888776
No 193
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.02 E-value=1.6e+02 Score=27.37 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCC-CCHHHHHHhcccC----CCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPV-TEDEDLHVIFSQF----GTVVSAEI 243 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~-~~e~~L~~~f~~~----G~i~~~~~ 243 (299)
..+...|-|-||.|+ +...+|...|+.| |.+..+.|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 345778888899886 6668888888765 56666654
No 194
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.66 E-value=54 Score=28.67 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=46.7
Q ss_pred CceEEEEcCCCC------------CCHHHHHHhcccCCCeEEEEEee-c----CCCCCe-----eeEEE---------EE
Q 046966 211 DNVLFVCQLNPV------------TEDEDLHVIFSQFGTVVSAEILR-D----YRTGES-----LCYAF---------VE 259 (299)
Q Consensus 211 ~~~v~v~nL~~~------------~~e~~L~~~f~~~G~i~~~~~~~-~----~~~g~~-----~g~af---------v~ 259 (299)
+.+||+.+||-. .+++.|+..|..||.|..+.|+. | ..+|+. .||+| |+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 456666666542 45778999999999998876642 1 233443 34443 23
Q ss_pred ecCHHHHHHHHHHhCCcee----CC----eEEEEEecCCc
Q 046966 260 FEKREACEQAYFKMNNALI----DD----RRICVDFSQSV 291 (299)
Q Consensus 260 f~~~~~a~~al~~l~~~~i----~g----~~l~v~~a~~~ 291 (299)
|-.......|+..|.|..+ .| -.++|+|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 3323334445555565432 22 24677777665
No 195
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.98 E-value=41 Score=30.88 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=34.1
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeec-CHHHHHHHHh
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAE-GLETLTRINQ 135 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~ 135 (299)
..+|.|.+.|..-.....+.-|++.| .| -|++..|+|+|.+ -+..|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~d-lp-~d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKD-LP-ADERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS--B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEccc-CC-CCCCeeEEEEECHHHHHHHHhcCC
Confidence 36799999987665667789999998 55 4889999999997 6888888843
No 196
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.33 E-value=55 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcc
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFS 233 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~ 233 (299)
.+.++|-|.|||....+++|++.+.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3578999999999999999997753
No 197
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.58 E-value=25 Score=21.92 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=11.5
Q ss_pred eeEEEEecCCCChH
Q 046966 10 GDIVIDLFVDKCPR 23 (299)
Q Consensus 10 G~i~ieL~~~~~P~ 23 (299)
||+++||.+++|-.
T Consensus 29 GRLVvEl~~~Ea~~ 42 (51)
T PF11314_consen 29 GRLVVELNPDEAKE 42 (51)
T ss_pred cEEEEEeCHHHHHH
Confidence 89999999877643
No 198
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=21.64 E-value=2.4e+02 Score=25.04 Aligned_cols=81 Identities=15% Similarity=0.296 Sum_probs=54.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecC-------CCCCeeeEEEEEecCHHHHHHHH----HHhCC--
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDY-------RTGESLCYAFVEFEKREACEQAY----FKMNN-- 275 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~-------~~g~~~g~afv~f~~~~~a~~al----~~l~~-- 275 (299)
-..+.|...|+..+++=..+-..|.+||+|+++.++.+. ...+....-.+.|-+.+.|..-. +.|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345677788999888888888889999999999998764 11122344567887777665432 23332
Q ss_pred ceeCCeEEEEEecC
Q 046966 276 ALIDDRRICVDFSQ 289 (299)
Q Consensus 276 ~~i~g~~l~v~~a~ 289 (299)
..+....|.+.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 23666777776644
No 199
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=21.47 E-value=91 Score=20.04 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=20.2
Q ss_pred ecCHHHHHHHHhcccCCCCCCceeEEEEEE
Q 046966 124 AEGLETLTRINQAVVDEENRPPQQIIIKQT 153 (299)
Q Consensus 124 ~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~ 153 (299)
++|.+|++.+.+. .......-||+.++.
T Consensus 4 ~sGv~vlRel~r~--~~~~~~~~PVVFTS~ 31 (58)
T PF08415_consen 4 FSGVEVLRELARR--GGGRAAVMPVVFTSM 31 (58)
T ss_pred ccHHHHHHHHHHh--cCCCCCcCCEEEeCC
Confidence 4699999999777 345556667777664
No 200
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.46 E-value=2.1e+02 Score=19.04 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=14.5
Q ss_pred HHHHHhcccCCCeEEEEE
Q 046966 226 EDLHVIFSQFGTVVSAEI 243 (299)
Q Consensus 226 ~~L~~~f~~~G~i~~~~~ 243 (299)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999875543
No 201
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.33 E-value=15 Score=35.17 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=52.7
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
..|.+|+.|++++++-++|..++..+..+....+..+....+...+++|.|.-.-...-|+-+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 36889999999999999999999988766655443332222334567888887667777777778776554443
Done!