Query 046966
Match_columns 299
No_of_seqs 344 out of 2767
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ok3_A Peptidyl-prolyl CIS-tra 100.0 5.8E-51 2E-55 327.4 19.4 155 1-157 1-156 (161)
2 2fu0_A Cyclophilin, putative; 100.0 4.3E-50 1.5E-54 321.4 18.3 154 1-156 6-159 (160)
3 2x7k_A Peptidyl-prolyl CIS-tra 100.0 6.5E-50 2.2E-54 322.3 18.2 154 1-156 12-165 (166)
4 2poe_A Cyclophilin-like protei 100.0 1.2E-49 4.2E-54 325.6 19.1 155 1-157 17-175 (185)
5 3bo7_A Peptidyl-prolyl CIS-tra 100.0 9.7E-50 3.3E-54 331.0 18.4 155 2-157 8-173 (201)
6 2b71_A Cyclophilin-like protei 100.0 1.2E-49 4.2E-54 327.5 18.1 155 1-157 39-193 (196)
7 1zkc_A Peptidyl-prolyl CIS-tra 100.0 4.8E-49 1.6E-53 323.9 19.4 154 2-157 21-175 (197)
8 2a2n_A Peptidylprolyl isomeras 100.0 9.1E-49 3.1E-53 318.0 18.7 153 1-155 22-175 (176)
9 2k7n_A Peptidyl-prolyl CIS-tra 100.0 8.4E-49 2.9E-53 323.5 18.2 155 1-157 12-166 (203)
10 1w74_A Peptidyl-prolyl CIS-tra 100.0 1.3E-47 4.3E-52 314.6 17.9 151 1-156 24-191 (191)
11 3bkp_A Cyclophilin; malaria, i 100.0 2.9E-47 9.9E-52 321.3 18.4 155 1-157 22-193 (232)
12 1mzw_A Cyclophilin H, U-snRNP- 100.0 4.1E-47 1.4E-51 309.1 17.9 147 7-156 22-177 (177)
13 2hq6_A Serologically defined c 100.0 5.8E-47 2E-51 309.5 18.1 153 2-157 26-180 (185)
14 2he9_A NK-tumor recognition pr 100.0 5.1E-47 1.7E-51 311.6 17.8 150 6-158 30-191 (192)
15 2wfi_A Peptidyl-prolyl CIS-tra 100.0 5.6E-47 1.9E-51 308.9 17.7 148 6-156 20-179 (179)
16 1a58_A Cyclophilin; isomerase, 100.0 8.5E-47 2.9E-51 307.5 18.6 148 7-157 18-177 (177)
17 3pmp_A Cyclophilin A; peptidyl 100.0 7.5E-47 2.6E-51 304.7 17.8 153 1-157 7-164 (164)
18 2cmt_A Peptidyl-prolyl CIS-tra 100.0 1.5E-46 5E-51 304.2 19.4 147 7-157 22-172 (172)
19 2haq_A Cyclophilin; rotamase, 100.0 5.4E-47 1.8E-51 306.2 16.6 147 6-156 22-172 (172)
20 3ich_A Peptidyl-prolyl CIS-tra 100.0 6.1E-47 2.1E-51 310.4 16.1 148 7-157 27-178 (188)
21 2igv_A Peptidyl-prolyl CIS-tra 100.0 3.4E-46 1.2E-50 302.9 19.2 147 7-157 15-172 (173)
22 1qng_A Peptidyl-prolyl CIS-tra 100.0 2.6E-46 8.9E-51 302.7 18.0 150 3-156 6-170 (170)
23 2r99_A Peptidyl-prolyl CIS-tra 100.0 5.8E-46 2E-50 301.3 19.3 147 7-157 23-173 (173)
24 2z6w_A Peptidyl-prolyl CIS-tra 100.0 6.3E-46 2.1E-50 299.1 18.0 147 7-157 15-165 (165)
25 3s6m_A Peptidyl-prolyl CIS-tra 100.0 3.6E-46 1.2E-50 302.0 15.7 151 1-156 4-167 (167)
26 2poy_A Peptidyl-prolyl CIS-tra 100.0 2E-45 6.8E-50 300.6 18.2 145 7-155 31-186 (186)
27 1lop_A Cyclophilin A; rotamase 100.0 5E-46 1.7E-50 299.9 14.0 151 2-157 1-164 (164)
28 4fru_A Cyclophilin B, peptidyl 100.0 3.1E-45 1.1E-49 300.6 18.9 148 7-157 24-175 (185)
29 3rdd_A Peptidyl-prolyl CIS-tra 100.0 2.6E-45 9E-50 300.0 18.4 152 2-157 24-184 (184)
30 2c3b_A Ppiase, cyclophilin; is 100.0 2.4E-46 8.2E-51 303.2 11.0 147 7-156 19-172 (172)
31 1z81_A Cyclophilin; structural 100.0 2.5E-45 8.7E-50 307.8 17.5 147 7-156 71-229 (229)
32 1v9t_A Cyclophilin B; beta bar 100.0 1.8E-45 6.3E-50 297.1 15.7 152 1-157 5-166 (166)
33 3k2c_A Peptidyl-prolyl CIS-tra 100.0 9.2E-45 3.1E-49 298.7 19.1 148 7-158 39-192 (193)
34 2ose_A Probable peptidyl-proly 100.0 3.4E-45 1.2E-49 309.4 15.4 156 2-157 20-207 (234)
35 1ihg_A Cyclophilin 40; ppiase 100.0 2.6E-41 8.9E-46 308.8 18.1 152 3-158 18-186 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 5.1E-38 1.8E-42 279.5 8.9 143 2-157 172-355 (369)
37 4fxv_A ELAV-like protein 1; RN 99.9 4.2E-21 1.4E-25 142.0 11.9 82 209-290 17-98 (99)
38 3s8s_A Histone-lysine N-methyl 99.8 2.2E-20 7.6E-25 140.7 12.2 85 208-292 3-87 (110)
39 3md1_A Nuclear and cytoplasmic 99.8 2.4E-19 8.3E-24 127.9 12.1 82 211-292 1-82 (83)
40 2lxi_A RNA-binding protein 10; 99.8 1.7E-20 5.8E-25 136.5 6.0 84 211-294 1-86 (91)
41 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.6E-19 8.9E-24 128.9 11.6 83 209-291 4-86 (87)
42 2cq0_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 131.7 13.4 88 207-294 11-98 (103)
43 2x1f_A MRNA 3'-END-processing 99.8 4E-19 1.4E-23 130.5 11.2 85 210-294 1-85 (96)
44 2cqc_A Arginine/serine-rich sp 99.8 7.6E-19 2.6E-23 128.6 12.5 85 206-290 10-94 (95)
45 2lkz_A RNA-binding protein 5; 99.8 1.5E-19 5.1E-24 132.4 8.5 82 209-290 7-94 (95)
46 2dgo_A Cytotoxic granule-assoc 99.8 1.2E-18 4E-23 132.3 13.7 88 207-294 11-98 (115)
47 2do4_A Squamous cell carcinoma 99.8 1.2E-18 4E-23 128.9 13.3 86 207-293 13-98 (100)
48 1x5u_A Splicing factor 3B subu 99.8 4.3E-19 1.5E-23 132.5 11.0 89 206-294 10-98 (105)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.4E-19 1.9E-23 126.6 10.9 82 208-289 4-85 (85)
50 2dgs_A DAZ-associated protein 99.8 7.8E-19 2.7E-23 129.6 12.0 86 208-294 7-92 (99)
51 2la6_A RNA-binding protein FUS 99.8 7.5E-19 2.6E-23 129.8 11.8 85 205-289 7-99 (99)
52 1x4h_A RNA-binding protein 28; 99.8 8.7E-19 3E-23 132.1 12.0 88 207-294 11-104 (111)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.2E-19 1.8E-23 131.3 10.6 87 208-294 9-95 (102)
54 1whw_A Hypothetical protein ri 99.8 7E-19 2.4E-23 129.8 11.2 86 209-294 6-91 (99)
55 2dnz_A Probable RNA-binding pr 99.8 7.2E-19 2.5E-23 128.7 11.2 85 209-293 3-87 (95)
56 1wi8_A EIF-4B, eukaryotic tran 99.8 8.5E-19 2.9E-23 130.7 11.6 87 208-296 12-99 (104)
57 2cpz_A CUG triplet repeat RNA- 99.8 9E-19 3.1E-23 132.9 12.0 87 208-294 22-108 (115)
58 3ns6_A Eukaryotic translation 99.8 8.3E-20 2.9E-24 135.2 6.0 85 210-294 5-96 (100)
59 1p27_B RNA-binding protein 8A; 99.8 7.7E-19 2.6E-23 131.3 10.9 85 208-292 20-104 (106)
60 2dnm_A SRP46 splicing factor; 99.8 5.3E-19 1.8E-23 131.5 9.9 86 208-293 10-95 (103)
61 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4.2E-23 127.2 11.7 84 206-289 11-94 (94)
62 2dnh_A Bruno-like 5, RNA bindi 99.8 1.9E-18 6.5E-23 128.9 12.9 86 208-294 12-100 (105)
63 1x5t_A Splicing factor 3B subu 99.8 4.3E-19 1.5E-23 130.2 9.2 86 209-294 3-89 (96)
64 2d9p_A Polyadenylate-binding p 99.8 1.9E-18 6.7E-23 128.4 12.8 87 206-294 10-96 (103)
65 4f25_A Polyadenylate-binding p 99.8 1.1E-18 3.6E-23 132.6 11.6 81 210-292 4-84 (115)
66 2jrs_A RNA-binding protein 39; 99.8 1.1E-18 3.9E-23 130.9 11.6 85 208-292 23-107 (108)
67 3p5t_L Cleavage and polyadenyl 99.8 1.4E-19 4.9E-24 131.3 6.3 82 212-293 2-85 (90)
68 2dng_A Eukaryotic translation 99.8 2.9E-18 1E-22 127.5 13.1 84 208-293 12-95 (103)
69 1x5s_A Cold-inducible RNA-bind 99.8 8.1E-19 2.8E-23 130.2 9.8 87 208-294 9-95 (102)
70 2cpf_A RNA binding motif prote 99.8 1.4E-18 4.7E-23 128.0 10.7 85 209-293 3-90 (98)
71 2cph_A RNA binding motif prote 99.8 1.7E-18 5.8E-23 129.6 11.3 88 207-294 11-100 (107)
72 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-18 4.4E-23 131.0 10.4 85 208-292 23-107 (110)
73 2div_A TRNA selenocysteine ass 99.8 1.3E-18 4.4E-23 128.4 9.6 85 208-292 6-95 (99)
74 3ex7_B RNA-binding protein 8A; 99.8 1.1E-18 3.7E-23 134.6 9.3 89 204-292 15-103 (126)
75 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-18 5.1E-23 129.7 9.6 87 208-294 10-99 (106)
76 2cpe_A RNA-binding protein EWS 99.8 2.5E-18 8.7E-23 130.0 10.9 88 207-294 11-106 (113)
77 4a8x_A RNA-binding protein wit 99.8 2.3E-18 7.8E-23 124.1 9.9 83 210-292 3-86 (88)
78 3s7r_A Heterogeneous nuclear r 99.8 5.5E-18 1.9E-22 122.0 11.9 80 208-288 8-87 (87)
79 2fy1_A RNA-binding motif prote 99.8 2E-18 6.9E-23 131.3 10.0 84 209-293 5-88 (116)
80 2dhg_A TRNA selenocysteine ass 99.8 1.8E-18 6.2E-23 128.8 9.6 86 208-294 6-93 (104)
81 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.1E-18 1.7E-22 135.8 12.9 85 209-293 37-121 (156)
82 2cqg_A TDP-43, TAR DNA-binding 99.8 1.1E-17 3.7E-22 124.4 13.8 87 208-296 12-98 (103)
83 3ulh_A THO complex subunit 4; 99.8 5.1E-18 1.7E-22 127.0 12.0 82 208-290 26-107 (107)
84 2ywk_A Putative RNA-binding pr 99.8 3.8E-18 1.3E-22 124.8 11.1 82 208-290 13-94 (95)
85 3n9u_C Cleavage and polyadenyl 99.8 2.5E-18 8.6E-23 137.5 10.5 84 209-292 53-138 (156)
86 2kxn_B Transformer-2 protein h 99.8 2.1E-18 7.2E-23 133.6 9.7 87 206-292 41-127 (129)
87 2cqp_A RNA-binding protein 12; 99.8 2.9E-18 9.8E-23 126.3 10.0 85 208-292 12-96 (98)
88 1u6f_A Tcubp1, RNA-binding pro 99.8 6E-18 2E-22 132.7 12.3 87 208-294 39-125 (139)
89 3ucg_A Polyadenylate-binding p 99.8 4.5E-18 1.5E-22 122.9 10.6 80 211-291 6-85 (89)
90 2khc_A Testis-specific RNP-typ 99.8 3.4E-18 1.2E-22 130.3 10.4 82 208-289 37-118 (118)
91 2cqd_A RNA-binding region cont 99.8 5.9E-18 2E-22 128.6 11.6 84 208-292 14-97 (116)
92 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.7E-18 3.3E-22 124.6 12.5 85 208-294 12-96 (103)
93 2cq3_A RNA-binding protein 9; 99.8 1.6E-17 5.6E-22 123.4 13.4 86 206-293 10-95 (103)
94 2ek1_A RNA-binding protein 12; 99.8 2.1E-18 7.2E-23 126.2 8.4 83 208-290 12-94 (95)
95 2dgw_A Probable RNA-binding pr 99.8 1E-17 3.6E-22 121.6 12.0 83 208-293 7-89 (91)
96 2dgx_A KIAA0430 protein; RRM d 99.8 4.8E-18 1.6E-22 124.7 10.2 83 208-293 6-92 (96)
97 1p1t_A Cleavage stimulation fa 99.8 1.1E-18 3.9E-23 129.9 6.9 84 210-293 7-90 (104)
98 2dgv_A HnRNP M, heterogeneous 99.8 5.4E-18 1.8E-22 123.3 10.3 84 208-293 5-88 (92)
99 1x4e_A RNA binding motif, sing 99.8 9.5E-19 3.3E-23 125.4 6.0 82 209-290 3-84 (85)
100 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.7E-18 2.6E-22 136.1 11.9 85 208-292 69-153 (165)
101 2dh8_A DAZ-associated protein 99.7 4.8E-18 1.6E-22 126.7 9.8 86 208-294 13-98 (105)
102 2do0_A HnRNP M, heterogeneous 99.7 2.5E-17 8.6E-22 124.6 13.9 84 207-291 11-94 (114)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.4E-18 4.7E-23 128.6 6.6 83 208-292 16-99 (100)
104 2rs2_A Musashi-1, RNA-binding 99.7 5.5E-18 1.9E-22 127.4 9.8 86 207-293 21-106 (109)
105 3r27_A HnRNP L, heterogeneous 99.7 7.5E-18 2.6E-22 123.6 10.1 82 205-292 15-98 (100)
106 1x5o_A RNA binding motif, sing 99.7 1.8E-17 6.2E-22 125.5 12.4 83 208-291 22-112 (114)
107 1x4d_A Matrin 3; structural ge 99.7 6.9E-18 2.4E-22 124.8 9.5 83 208-296 12-97 (102)
108 2cpi_A CCR4-NOT transcription 99.7 1.8E-17 6.1E-22 125.0 11.9 84 209-292 13-102 (111)
109 2kn4_A Immunoglobulin G-bindin 99.7 8.2E-18 2.8E-22 134.8 10.6 86 209-294 68-153 (158)
110 2m2b_A RNA-binding protein 10; 99.7 1E-18 3.6E-23 135.8 5.0 84 209-293 21-110 (131)
111 1x4b_A Heterogeneous nuclear r 99.7 3.8E-18 1.3E-22 129.7 8.0 85 210-295 26-110 (116)
112 1sjq_A Polypyrimidine tract-bi 99.7 3.9E-18 1.3E-22 126.4 7.8 82 205-292 10-93 (105)
113 1x4a_A Splicing factor, argini 99.7 2.4E-17 8.3E-22 123.8 12.1 84 208-294 19-102 (109)
114 2jwn_A Embryonic polyadenylate 99.7 1.5E-17 5.1E-22 127.9 11.1 82 211-293 36-117 (124)
115 1s79_A Lupus LA protein; RRM, 99.7 4.7E-18 1.6E-22 126.3 7.8 80 209-290 9-88 (103)
116 1x4c_A Splicing factor, argini 99.7 2.3E-17 7.7E-22 123.8 11.5 81 209-296 13-98 (108)
117 2fc8_A NCL protein; structure 99.7 3.9E-17 1.3E-21 121.1 12.7 85 207-294 11-95 (102)
118 2cq4_A RNA binding motif prote 99.7 5.9E-18 2E-22 128.2 8.0 82 211-293 25-106 (114)
119 2nlw_A Eukaryotic translation 99.7 9.9E-18 3.4E-22 125.1 9.1 84 209-294 13-103 (105)
120 2a3j_A U1 small nuclear ribonu 99.7 8.8E-18 3E-22 129.5 9.0 84 208-294 26-113 (127)
121 2ki2_A SS-DNA binding protein 99.7 1.9E-18 6.5E-23 125.2 4.8 82 212-294 2-83 (90)
122 2mss_A Protein (musashi1); RNA 99.7 3.5E-18 1.2E-22 119.4 5.9 75 213-288 1-75 (75)
123 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.2E-22 125.0 9.8 84 206-291 24-107 (109)
124 2wbr_A GW182, gawky, LD47780P; 99.7 1.7E-17 5.9E-22 117.7 9.4 75 209-289 5-79 (89)
125 2kt5_A RNA and export factor-b 99.7 2.2E-17 7.6E-22 126.9 10.9 84 208-292 32-115 (124)
126 2fc9_A NCL protein; structure 99.7 4E-17 1.4E-21 120.8 11.8 83 208-294 12-94 (101)
127 2cq1_A PTB-like protein L; RRM 99.7 4.5E-17 1.5E-21 120.4 12.0 81 206-292 10-92 (101)
128 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-17 8.7E-22 129.1 11.2 82 207-288 59-140 (140)
129 2hgl_A HNRPF protein, heteroge 99.7 8E-18 2.7E-22 131.2 7.8 86 208-295 41-129 (136)
130 2dis_A Unnamed protein product 99.7 1.2E-17 4.2E-22 125.3 8.4 85 209-293 6-94 (109)
131 2lea_A Serine/arginine-rich sp 99.7 4.5E-18 1.5E-22 132.8 6.1 86 209-294 45-130 (135)
132 1wez_A HnRNP H', FTP-3, hetero 99.7 3.4E-17 1.2E-21 121.5 10.6 83 208-293 12-94 (102)
133 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.9E-18 2E-22 118.8 6.0 76 212-288 1-76 (77)
134 2db1_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 127.3 8.1 82 209-292 15-99 (118)
135 2cpy_A RNA-binding protein 12; 99.7 1.5E-17 5.2E-22 126.0 8.0 84 207-292 11-95 (114)
136 2ad9_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 124.6 9.5 80 207-292 27-108 (119)
137 2jvo_A Nucleolar protein 3; nu 99.7 2.9E-17 9.8E-22 123.2 9.3 80 208-295 28-107 (108)
138 2cpj_A Non-POU domain-containi 99.7 4E-17 1.4E-21 120.4 9.9 84 207-296 11-94 (99)
139 1wg5_A Heterogeneous nuclear r 99.7 5.1E-17 1.7E-21 121.0 10.4 83 208-292 12-95 (104)
140 2cpx_A Hypothetical protein FL 99.7 8.6E-18 2.9E-22 127.4 5.8 87 208-294 22-108 (115)
141 2xnq_A Nuclear polyadenylated 99.7 9.2E-17 3.1E-21 118.1 10.9 79 207-293 18-97 (97)
142 2e5j_A Methenyltetrahydrofolat 99.7 3.4E-17 1.2E-21 120.3 8.6 83 206-293 14-96 (97)
143 1nu4_A U1A RNA binding domain; 99.7 1.5E-17 5.1E-22 122.1 6.7 84 208-294 5-92 (97)
144 2dnq_A RNA-binding protein 4B; 99.7 7.5E-17 2.6E-21 116.8 10.2 79 208-294 5-83 (90)
145 1wex_A Hypothetical protein (r 99.7 6E-17 2E-21 120.5 9.7 80 207-292 11-92 (104)
146 1why_A Hypothetical protein ri 99.7 6.1E-17 2.1E-21 118.9 9.7 81 207-293 13-95 (97)
147 2jvr_A Nucleolar protein 3; RN 99.7 3.6E-17 1.2E-21 123.0 8.5 81 208-292 25-106 (111)
148 1wel_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 127.8 6.6 84 208-292 22-105 (124)
149 1x4g_A Nucleolysin TIAR; struc 99.7 7.6E-17 2.6E-21 121.1 9.9 81 209-295 23-103 (109)
150 1fj7_A Nucleolin RBD1, protein 99.7 4E-18 1.4E-22 126.2 2.8 84 208-293 14-97 (101)
151 2cpd_A Apobec-1 stimulating pr 99.7 2.4E-16 8.1E-21 116.2 12.3 81 206-294 10-92 (99)
152 2lcw_A RNA-binding protein FUS 99.5 1.4E-18 4.7E-23 132.2 0.0 86 209-294 5-98 (116)
153 2dgt_A RNA-binding protein 30; 99.7 1.9E-16 6.4E-21 115.1 11.4 79 208-294 7-85 (92)
154 3q2s_C Cleavage and polyadenyl 99.7 3.1E-17 1.1E-21 139.4 8.3 82 210-291 67-150 (229)
155 1fjc_A Nucleolin RBD2, protein 99.7 5.8E-17 2E-21 118.8 8.6 81 208-293 13-93 (96)
156 2dnn_A RNA-binding protein 12; 99.7 4.7E-17 1.6E-21 122.0 7.9 79 210-291 15-93 (109)
157 2lmi_A GRSF-1, G-rich sequence 99.7 1.2E-17 4.3E-22 125.0 4.7 83 208-292 8-93 (107)
158 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-16 5.8E-21 113.5 10.3 76 208-289 9-85 (85)
159 2dgu_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 117.6 10.9 78 208-293 8-85 (103)
160 4f02_A Polyadenylate-binding p 99.7 1.9E-16 6.4E-21 133.2 12.1 85 208-292 12-96 (213)
161 3lqv_A PRE-mRNA branch site pr 99.7 8.2E-17 2.8E-21 122.0 8.8 82 208-292 5-86 (115)
162 2dnp_A RNA-binding protein 14; 99.7 2E-16 6.7E-21 114.6 10.4 79 208-294 6-84 (90)
163 2krb_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 117.1 5.2 73 211-285 1-80 (81)
164 1x4f_A Matrin 3; structural ge 99.7 5.3E-17 1.8E-21 121.9 7.3 81 208-294 22-105 (112)
165 2la4_A Nuclear and cytoplasmic 99.7 7.7E-17 2.6E-21 119.3 7.9 76 210-291 26-101 (101)
166 2hvz_A Splicing factor, argini 99.7 4.8E-17 1.7E-21 120.4 6.7 77 212-293 1-77 (101)
167 2j8a_A Histone-lysine N-methyl 99.7 1.4E-16 4.7E-21 120.6 8.8 80 212-291 3-96 (136)
168 3egn_A RNA-binding protein 40; 99.7 3.8E-17 1.3E-21 128.8 6.1 85 208-292 42-131 (143)
169 1wf1_A RNA-binding protein RAL 99.7 2E-16 6.9E-21 118.9 9.7 77 208-292 24-101 (110)
170 2xs2_A Deleted in azoospermia- 99.7 5.7E-17 2E-21 120.2 6.6 82 209-293 7-88 (102)
171 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6.3E-22 115.7 3.7 75 213-288 1-75 (75)
172 2i2y_A Fusion protein consists 99.7 1.5E-16 5.1E-21 126.4 9.4 80 208-292 70-149 (150)
173 2kvi_A Nuclear polyadenylated 99.7 1E-16 3.6E-21 117.5 7.4 79 208-294 7-86 (96)
174 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-16 4.7E-21 116.1 7.9 79 209-294 6-86 (93)
175 1fxl_A Paraneoplastic encephal 99.7 7.1E-16 2.4E-20 123.8 12.8 83 210-292 1-83 (167)
176 3md3_A Nuclear and cytoplasmic 99.7 9.4E-16 3.2E-20 123.0 13.3 82 209-290 85-166 (166)
177 2e44_A Insulin-like growth fac 99.7 4E-16 1.4E-20 114.2 9.5 80 208-291 12-92 (96)
178 1b7f_A Protein (SXL-lethal pro 99.7 4.6E-16 1.6E-20 125.2 10.6 83 210-292 2-84 (168)
179 2f3j_A RNA and export factor b 99.7 3E-16 1E-20 128.1 9.5 85 208-293 85-169 (177)
180 3pgw_S U1-70K; protein-RNA com 99.7 5.7E-16 2E-20 143.5 12.4 84 209-292 100-183 (437)
181 1x5p_A Negative elongation fac 99.6 1.3E-15 4.4E-20 111.8 11.5 80 207-294 11-90 (97)
182 3d2w_A TAR DNA-binding protein 99.6 7.6E-16 2.6E-20 111.3 9.3 78 206-292 6-85 (89)
183 2yh0_A Splicing factor U2AF 65 99.6 1.3E-15 4.5E-20 125.9 11.8 86 208-293 111-196 (198)
184 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.8E-20 111.5 9.9 77 210-292 7-83 (94)
185 2dha_A FLJ20171 protein; RRM d 99.6 1.7E-16 6E-21 121.5 5.6 82 209-292 21-106 (123)
186 3beg_B Splicing factor, argini 99.6 6.2E-16 2.1E-20 117.2 8.6 77 210-293 15-96 (115)
187 2hgm_A HNRPF protein, heteroge 99.6 2.7E-16 9.2E-21 120.7 6.5 81 208-291 39-121 (126)
188 1whx_A Hypothetical protein ri 99.6 2.6E-16 9E-21 118.5 6.4 76 210-291 9-84 (111)
189 2g4b_A Splicing factor U2AF 65 99.6 1.8E-15 6.3E-20 122.2 11.8 80 210-289 93-172 (172)
190 1wg1_A KIAA1579 protein, homol 99.6 1E-15 3.6E-20 110.2 9.1 76 210-292 4-79 (88)
191 2qfj_A FBP-interacting repress 99.6 2.1E-15 7.1E-20 126.5 11.9 84 210-293 124-207 (216)
192 2diu_A KIAA0430 protein; struc 99.6 9.6E-16 3.3E-20 109.7 8.2 76 209-294 6-87 (96)
193 2e5i_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 113.9 12.0 78 209-292 21-103 (124)
194 3zzy_A Polypyrimidine tract-bi 99.6 2.7E-15 9.4E-20 115.2 11.2 76 212-292 29-107 (130)
195 1l3k_A Heterogeneous nuclear r 99.6 2.3E-15 7.8E-20 124.3 11.5 85 209-294 102-186 (196)
196 4f02_A Polyadenylate-binding p 99.6 1.8E-15 6.2E-20 127.1 11.0 80 211-292 103-182 (213)
197 1l3k_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 124.4 11.2 84 208-292 10-93 (196)
198 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.7E-21 125.2 2.9 82 208-292 43-124 (139)
199 2cjk_A Nuclear polyadenylated 99.6 8.1E-16 2.8E-20 123.7 7.4 80 211-291 87-166 (167)
200 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.8E-20 114.8 7.5 77 209-291 23-106 (114)
201 1sjr_A Polypyrimidine tract-bi 99.6 2.9E-15 1E-19 119.3 9.8 78 211-292 46-125 (164)
202 1b7f_A Protein (SXL-lethal pro 99.6 8.5E-15 2.9E-19 117.7 12.1 80 209-288 87-168 (168)
203 2pe8_A Splicing factor 45; RRM 99.6 8.5E-15 2.9E-19 108.9 10.7 83 209-291 6-94 (105)
204 3md3_A Nuclear and cytoplasmic 99.6 6.2E-15 2.1E-19 118.1 10.6 80 212-292 1-80 (166)
205 2dnl_A Cytoplasmic polyadenyla 99.6 2.5E-15 8.6E-20 113.7 7.8 78 209-289 6-86 (114)
206 3tyt_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 123.8 9.9 78 209-291 2-80 (205)
207 1wf0_A TDP-43, TAR DNA-binding 99.6 2.3E-15 8E-20 108.3 6.2 79 209-294 3-81 (88)
208 1fxl_A Paraneoplastic encephal 99.6 1.4E-14 4.7E-19 116.2 11.1 79 210-288 87-167 (167)
209 2bz2_A Negative elongation fac 99.6 6.8E-15 2.3E-19 112.5 8.5 78 208-293 36-113 (121)
210 2qfj_A FBP-interacting repress 99.6 8.3E-15 2.8E-19 122.8 9.7 83 210-292 27-109 (216)
211 2hzc_A Splicing factor U2AF 65 99.6 7.9E-15 2.7E-19 105.2 7.9 72 209-287 4-86 (87)
212 3nmr_A Cugbp ELAV-like family 99.6 1.4E-14 4.6E-19 117.2 10.2 79 210-289 94-175 (175)
213 3nmr_A Cugbp ELAV-like family 99.6 1.6E-14 5.5E-19 116.8 10.5 83 210-292 2-89 (175)
214 1fje_B Nucleolin RBD12, protei 99.6 1.8E-14 6.2E-19 116.8 10.4 78 210-292 98-175 (175)
215 2voo_A Lupus LA protein; RNA-b 99.5 3.8E-14 1.3E-18 117.2 11.2 79 211-291 109-187 (193)
216 2cjk_A Nuclear polyadenylated 99.5 9.7E-15 3.3E-19 117.3 7.4 81 210-292 2-82 (167)
217 3pgw_A U1-A; protein-RNA compl 99.5 4.7E-14 1.6E-18 123.3 11.4 82 208-292 6-91 (282)
218 2ghp_A U4/U6 snRNA-associated 99.5 4E-14 1.4E-18 124.4 10.3 83 208-291 207-291 (292)
219 3smz_A Protein raver-1, ribonu 99.5 9.8E-14 3.3E-18 121.4 12.4 83 210-292 94-176 (284)
220 3u1l_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.4E-19 121.1 7.8 79 209-293 132-231 (240)
221 2dit_A HIV TAT specific factor 99.5 1.4E-13 4.7E-18 103.7 10.9 84 207-294 11-105 (112)
222 3smz_A Protein raver-1, ribonu 99.5 9E-14 3.1E-18 121.6 11.3 84 209-293 182-266 (284)
223 2adc_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 119.3 8.7 81 206-291 29-110 (229)
224 1fje_B Nucleolin RBD12, protei 99.5 2.3E-14 7.8E-19 116.2 3.6 84 207-292 9-92 (175)
225 3pgw_A U1-A; protein-RNA compl 99.5 3.3E-13 1.1E-17 117.9 11.1 77 208-289 204-281 (282)
226 3sde_A Paraspeckle component 1 99.4 2.5E-13 8.7E-18 117.5 10.0 83 208-296 19-101 (261)
227 3v4m_A Splicing factor U2AF 65 99.4 2.7E-13 9.4E-18 100.8 8.7 83 209-291 3-97 (105)
228 3tyt_A Heterogeneous nuclear r 99.4 1.5E-13 5E-18 114.8 8.0 79 208-288 120-204 (205)
229 2ghp_A U4/U6 snRNA-associated 99.4 2.9E-13 9.8E-18 118.9 10.2 81 208-291 38-118 (292)
230 1jmt_A Splicing factor U2AF 35 99.4 6.4E-14 2.2E-18 104.0 4.8 72 216-288 20-103 (104)
231 2adc_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 113.8 9.7 79 208-291 148-228 (229)
232 1qm9_A Polypyrimidine tract-bi 99.4 3E-13 1E-17 111.9 8.3 79 208-291 117-197 (198)
233 1qm9_A Polypyrimidine tract-bi 99.4 1.4E-13 4.8E-18 113.9 6.4 76 211-291 3-79 (198)
234 3ue2_A Poly(U)-binding-splicin 99.4 7.2E-13 2.5E-17 100.4 9.2 81 210-290 19-108 (118)
235 3sde_A Paraspeckle component 1 99.4 1.3E-12 4.4E-17 113.1 10.9 82 210-292 95-180 (261)
236 2yh0_A Splicing factor U2AF 65 99.3 2.6E-12 8.9E-17 105.9 8.0 75 210-291 3-88 (198)
237 2g4b_A Splicing factor U2AF 65 99.3 3.1E-12 1E-16 103.1 8.1 75 210-291 3-88 (172)
238 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6.2E-16 89.8 10.3 66 221-293 27-92 (100)
239 3tht_A Alkylated DNA repair pr 99.3 1.1E-11 3.9E-16 110.5 9.0 76 208-289 15-97 (345)
240 3s6e_A RNA-binding protein 39; 99.2 4.6E-11 1.6E-15 89.9 8.9 78 209-290 5-92 (114)
241 2dnr_A Synaptojanin-1; RRM dom 99.2 1.1E-10 3.7E-15 82.8 9.0 74 208-290 4-85 (91)
242 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.7E-14 82.6 9.0 78 207-290 14-95 (121)
243 1ufw_A Synaptojanin 2; RNP dom 99.0 6.7E-10 2.3E-14 79.1 5.9 74 208-290 12-94 (95)
244 3dxb_A Thioredoxin N-terminall 98.8 1E-08 3.5E-13 86.2 8.3 67 224-290 142-212 (222)
245 2l9w_A U4/U6 snRNA-associated- 98.2 7.1E-06 2.4E-10 59.6 8.8 75 209-289 19-98 (117)
246 1wey_A Calcipressin 1; structu 97.3 0.00082 2.8E-08 48.5 6.7 76 210-291 4-84 (104)
247 2dhx_A Poly (ADP-ribose) polym 97.0 0.0051 1.7E-07 44.2 8.5 73 210-291 7-84 (104)
248 1whv_A Poly(A)-specific ribonu 96.9 0.005 1.7E-07 43.7 8.0 56 210-274 15-70 (100)
249 3ctr_A Poly(A)-specific ribonu 96.9 0.0017 5.8E-08 46.3 5.5 55 211-274 6-60 (101)
250 1uw4_A UPF3X; nonsense mediate 96.7 0.013 4.4E-07 41.4 9.1 68 212-279 2-71 (91)
251 1wwh_A Nucleoporin 35, nucleop 95.8 0.039 1.3E-06 40.8 7.5 72 210-289 23-95 (119)
252 3kop_A Uncharacterized protein 95.3 0.14 5E-06 40.3 9.6 105 11-135 34-167 (188)
253 2kn4_A Immunoglobulin G-bindin 95.2 0.023 8E-07 44.1 5.1 35 240-276 2-36 (158)
254 2nnz_A Hypothetical protein; b 94.8 0.071 2.4E-06 41.4 6.5 102 1-133 30-142 (153)
255 2i2y_A Fusion protein consists 94.3 0.027 9.4E-07 43.4 3.2 42 249-291 9-51 (150)
256 2l08_A Regulator of nonsense t 94.2 0.082 2.8E-06 37.6 5.1 78 211-288 9-93 (97)
257 3pq1_A Poly(A) RNA polymerase; 93.5 0.047 1.6E-06 50.3 3.6 55 211-271 53-107 (464)
258 3p3d_A Nucleoporin 53; structu 93.4 0.077 2.6E-06 39.8 4.0 78 211-290 7-98 (132)
259 1zx8_A Hypothetical protein TM 86.4 2.9 9.8E-05 31.5 7.4 101 1-133 13-123 (136)
260 3d45_A Poly(A)-specific ribonu 78.8 6.3 0.00022 36.6 8.1 56 211-275 440-495 (507)
261 2g0c_A ATP-dependent RNA helic 57.9 13 0.00043 24.4 4.0 59 222-289 12-75 (76)
262 2k9u_B Filamin-binding LIM pro 41.5 22 0.00077 18.0 2.2 13 96-108 7-19 (26)
263 2khf_A PLNJ; anti-microbial, b 33.4 9.7 0.00033 18.9 0.1 15 26-40 4-18 (26)
264 4e8u_A Putative uncharacterize 28.9 1.6E+02 0.0055 22.8 6.5 57 211-270 12-80 (172)
No 1
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=5.8e-51 Score=327.43 Aligned_cols=155 Identities=46% Similarity=0.794 Sum_probs=149.1
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
|+|+|+|+.|+|+||||++.||+||+||++||++++|+|+.||||+|+|++||||+.++|.++.++|+.. +++|..+.+
T Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l 79 (161)
T 2ok3_A 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKK-FEDEYSEYL 79 (161)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSC-BCCCCCTTC
T ss_pred CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCc-cccccCcCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999875 688977789
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCC-CCCceeEEEEEEEEEC
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEE-NRPPQQIIIKQTYVLY 157 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~p~~~v~I~~~~v~~ 157 (299)
+|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+ ++|..+|+|.+|.|+.
T Consensus 80 ~h~~~G~lsma~~gp~s~~SQFfI~~~~-~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 80 KHNVRGVVSMANNGPNTNGSQFFITYGK-QPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp CSCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred CcCCCeEEEEecCCCCCcceEEEEEcCC-CCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence 9999999999999999999999999998 69999999999999999999999999999887 9999999999999997
No 2
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=4.3e-50 Score=321.44 Aligned_cols=154 Identities=42% Similarity=0.720 Sum_probs=147.2
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
++|+|+|+.|+|+||||++.||+||+||++||+.++|+|+.||||+|+|+|||||+.++|.++.++|+.. +++|..+.+
T Consensus 6 ~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l 84 (160)
T 2fu0_A 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNE-FEDEFFDHL 84 (160)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSC-BCCCCBTTB
T ss_pred CEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCC-ccccccCCc
Confidence 5799999999999999999999999999999999999999999999999999999998999999999866 689977789
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
+|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|.|+
T Consensus 85 ~h~~~G~lsmA~~gp~s~~SQFfI~~~~-~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~ 159 (160)
T 2fu0_A 85 NHSKPFMVSMANCGPNTNGSQFFITTVP-CPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN 159 (160)
T ss_dssp CSSSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred ccCCceEEEEecCCCCCcccEEEEECCC-CCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence 9999999999999999999999999998 69999999999999999999999999999989999999999999985
No 3
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=6.5e-50 Score=322.31 Aligned_cols=154 Identities=44% Similarity=0.780 Sum_probs=147.5
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
++|+|+|+.|+|+||||++.||+||+||++||+.++|+|+.||||+|+|+|||||+.++|.++.++|+.. +++|..+.+
T Consensus 12 ~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l 90 (166)
T 2x7k_A 12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQ-FEDELHPDL 90 (166)
T ss_dssp SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSC-BCCCCCTTS
T ss_pred CEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCc-ccccccccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999866 689977889
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
+|+++|+||||+.+||+++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|.|+
T Consensus 91 ~h~~~G~lsmAn~gp~s~gSQFfI~~~~-~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 91 KFTGAGILAMANAGPDTNGSQFFVTLAP-TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp CCCSTTEEEECBSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred CCCCCeEEEEeeCCCCCccceEEEECCC-CCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 9988999999999999999999999998 69999999999999999999999999999988999999999999985
No 4
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=1.2e-49 Score=325.63 Aligned_cols=155 Identities=41% Similarity=0.717 Sum_probs=149.0
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
|+|+|+|+.|+|+||||++.||+||+||++||+.|+|+|+.||||+|+|+|||||+.++|.++.++|+.. +++|..+.+
T Consensus 17 ~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l 95 (185)
T 2poe_A 17 QGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRY-FDDEIYPEL 95 (185)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSC-BCCCCCTTS
T ss_pred eEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCc-ccccccCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999865 689977899
Q ss_pred CCCCceEEEEEcCC----CCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 81 KHDKVGTVGMASAG----RDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 81 ~~~~~G~l~~~~~~----~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
+|+++|+||||+.+ |++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|+++
T Consensus 96 ~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~ 174 (185)
T 2poe_A 96 KYDRRGILSMASKGASKKPNTNGSQFFITYSS-LPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIH 174 (185)
T ss_dssp CCCSTTEEEECCSCC-CCCSCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEE
T ss_pred ccCCCeEEEEecCCCCCCCCCccceEEEECCC-CCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEE
Confidence 99999999999999 99999999999998 79999999999999999999999999999988999999999999999
Q ss_pred C
Q 046966 157 Y 157 (299)
Q Consensus 157 ~ 157 (299)
.
T Consensus 175 ~ 175 (185)
T 2poe_A 175 S 175 (185)
T ss_dssp C
T ss_pred C
Confidence 7
No 5
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=9.7e-50 Score=331.04 Aligned_cols=155 Identities=31% Similarity=0.569 Sum_probs=141.4
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEec-----CCCCCCCCCCCCCC------Cc
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTG-----DPTGTGTGGRSVYE------DR 70 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G-----~~~~~~~~~~~~~~------~~ 70 (299)
.|+|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+|+|||||| |+.++|.++.++|. +.
T Consensus 8 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~~~g~ 87 (201)
T 3bo7_A 8 YLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGA 87 (201)
T ss_dssp EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSSTTCC
T ss_pred EEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccccCCC
Confidence 68999999999999999999999999999999999999999999999999999 99988999999983 34
Q ss_pred ccccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEE
Q 046966 71 FFVDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIII 150 (299)
Q Consensus 71 ~~~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I 150 (299)
.+++|..+.++|+.+|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|
T Consensus 88 ~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I 166 (201)
T 3bo7_A 88 PFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS-CEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKV 166 (201)
T ss_dssp CBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBE
T ss_pred cccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEE
Confidence 57899888999999999999999999999999999998 79999999999999999999999999999989999999999
Q ss_pred EEEEEEC
Q 046966 151 KQTYVLY 157 (299)
Q Consensus 151 ~~~~v~~ 157 (299)
.+|+++.
T Consensus 167 ~~~~v~~ 173 (201)
T 3bo7_A 167 EEIIVFK 173 (201)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999996
No 6
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=1.2e-49 Score=327.53 Aligned_cols=155 Identities=37% Similarity=0.659 Sum_probs=147.4
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
++|+|+|+.|+|+||||++.||+||+||++||+.|+|+|+.||||+|+|+|||||+.++|.++.++|+.. +++|..+.+
T Consensus 39 ~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l 117 (196)
T 2b71_A 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEY-FEDEINKEL 117 (196)
T ss_dssp CEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSC-BCCCCCTTC
T ss_pred cEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCc-ccccccCCc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999865 688978889
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|.|+.
T Consensus 118 ~h~~~G~lsMAn~gpns~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~ 193 (196)
T 2b71_A 118 KHTGAGILSMSNNGPNTNSSQFFITLAP-LPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193 (196)
T ss_dssp CCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred CcCCCeEEEEccCCCCCcccEEEEECCC-CCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence 9999999999999999999999999998 799999999999999999999999999999899999999999999986
No 7
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=4.8e-49 Score=323.87 Aligned_cols=154 Identities=44% Similarity=0.788 Sum_probs=147.7
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
.|+|+|+.|+|+||||++.||+||+||++||+.|||+|+.||||+|+|||||||+.++|.++.++|+.. +++|..+.++
T Consensus 21 ~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~-f~dE~~~~l~ 99 (197)
T 1zkc_A 21 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKP-FKDEFRPNLS 99 (197)
T ss_dssp EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSC-BCCCCCTTCC
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCc-cccccCcCcC
Confidence 589999999999999999999999999999999999999999999999999999999999999998765 6899888999
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCC-CCCceeEEEEEEEEEC
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEE-NRPPQQIIIKQTYVLY 157 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~p~~~v~I~~~~v~~ 157 (299)
|+.+|+||||+.+|++++|||||++.+ .++||++|+|||+|++||+||++|++.+++.+ ++|..+|+|.+|+++.
T Consensus 100 h~~~G~lsMAn~gp~sngSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~ 175 (197)
T 1zkc_A 100 HTGRGILSMANSGPNSNRSQFFITFRS-CAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFV 175 (197)
T ss_dssp SCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEE
T ss_pred CCCceEEEEecCCCCCcccEEEEEcCC-CCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEc
Confidence 999999999999999999999999998 79999999999999999999999999999887 9999999999999986
No 8
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=9.1e-49 Score=317.99 Aligned_cols=153 Identities=46% Similarity=0.797 Sum_probs=145.7
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
+.|+++|+.|+|+||||++.||+||+||++||+.++|+|+.||||+|+|+|||||+.++|.++.++|+.. +++|....+
T Consensus 22 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l 100 (176)
T 2a2n_A 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGE-FEDEFHSTL 100 (176)
T ss_dssp SEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSC-BCCCCCTTC
T ss_pred CEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccCCc-ccccccccc
Confidence 3699999999999999999999999999999999999999999999999999999999999999999866 689977789
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccC-CCCCCceeEEEEEEEE
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVD-EENRPPQQIIIKQTYV 155 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~-~~~~p~~~v~I~~~~v 155 (299)
+|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++ .+++|..+|+|.+|.|
T Consensus 101 ~h~~~G~lsmA~~gp~s~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v 175 (176)
T 2a2n_A 101 RHDRPYTLSMANAGSNTNGSQFFITVVP-TPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175 (176)
T ss_dssp CSCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred ccCCceEEEEEeCCCCCcccEEEEECCC-CCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence 9999999999999999999999999998 799999999999999999999999999998 6899999999999986
No 9
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=8.4e-49 Score=323.50 Aligned_cols=155 Identities=43% Similarity=0.766 Sum_probs=148.7
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
+.|+|+|++|+|+||||++.||+||+||++||+.+||+|+.||||+|+|+|||||+.+++.++.++|+.. +++|..+.+
T Consensus 12 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~-f~dE~~~~l 90 (203)
T 2k7n_A 12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQ-FEDELHPDL 90 (203)
T ss_dssp SEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSC-BCCCCCCSS
T ss_pred CEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCc-ccccccccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999766 689977899
Q ss_pred CCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 81 KHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 81 ~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+|+++|+|+||+.+||+++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|+|++
T Consensus 91 ~h~~~G~lsMAn~gpnsngSQFFIt~~~-~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~ 166 (203)
T 2k7n_A 91 KFTGAGILAMANAGPDTNGSQFFVTLAP-TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG 166 (203)
T ss_dssp CCCSSCEEEEEESSTTCEEEEEEEESSC-CCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECC
T ss_pred cCCCCeEEEEeeCCCCCcccEEEEEcCC-CCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEe
Confidence 9998999999999999999999999998 699999999999999999999999999999889999999999999997
No 10
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=1.3e-47 Score=314.63 Aligned_cols=151 Identities=36% Similarity=0.650 Sum_probs=140.9
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhh---------------hCCCcCCceeeEeecCcEEEecCCCCCCCCCCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHC---------------KNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRS 65 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~---------------~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~ 65 (299)
++|+|+|+.|+|+||||++.||+||+||++|| +.++|+|+.||||+|+|||||||+.++|.++
T Consensus 24 ~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~gg-- 101 (191)
T 1w74_A 24 ATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGG-- 101 (191)
T ss_dssp EEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSCC--
T ss_pred eEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCCCC--
Confidence 46999999999999999999999999999999 3579999999999999999999998887777
Q ss_pred CCCCcccccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeec--CHHHHHHHHhcccCCCCC
Q 046966 66 VYEDRFFVDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAE--GLETLTRINQAVVDEENR 143 (299)
Q Consensus 66 ~~~~~~~~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~~~~~~~ 143 (299)
++. .+++|..+.++|+++|+||||+.+||+++|||||++.+ .+|||++|+|||+|++ ||+||++|++.+++.+++
T Consensus 102 -~g~-~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~-~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~ 178 (191)
T 1w74_A 102 -PGY-KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK-TPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDR 178 (191)
T ss_dssp -SSC-CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSC
T ss_pred -CCC-ccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCC-CcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCC
Confidence 333 47899778999999999999999999999999999998 7999999999999999 999999999999998999
Q ss_pred CceeEEEEEEEEE
Q 046966 144 PPQQIIIKQTYVL 156 (299)
Q Consensus 144 p~~~v~I~~~~v~ 156 (299)
|..+|+|.+|+|+
T Consensus 179 P~~~v~I~~~~i~ 191 (191)
T 1w74_A 179 PTDPVVIESITIS 191 (191)
T ss_dssp BSSCCEEEEEEEC
T ss_pred cCCCeEEEEEEEC
Confidence 9999999999984
No 11
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=2.9e-47 Score=321.32 Aligned_cols=155 Identities=41% Similarity=0.674 Sum_probs=143.4
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCC-CcccccccccC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYE-DRFFVDEIRAD 79 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~-~~~~~~e~~~~ 79 (299)
..|+|+|++|+|+||||++.||+||+||++||+.|||+|+.||||+|+|||||||+.++|.+|.++|. +..+++|..+.
T Consensus 22 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~dE~~~~ 101 (232)
T 3bkp_A 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPR 101 (232)
T ss_dssp CEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCCCCCTT
T ss_pred CEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCCccccC
Confidence 36999999999999999999999999999999999999999999999999999999999999999983 34479997778
Q ss_pred CCCCCceEEEEEcCCC--------------CCCcceEEEEecCCCCCCCCCceEEEEeecCHHH--HHHHHhcccCCCCC
Q 046966 80 LKHDKVGTVGMASAGR--------------DLNASQFYITLRDNLHYLDEKHTIFGEVAEGLET--LTRINQAVVDEENR 143 (299)
Q Consensus 80 ~~~~~~G~l~~~~~~~--------------~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~v--l~~i~~~~~~~~~~ 143 (299)
++|+.+|+||||+.++ ++++|||||++.+ .+|||++|+|||+|+ ||++ |++|++.+++.+++
T Consensus 102 l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~-~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~ 179 (232)
T 3bkp_A 102 LKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR-ADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDR 179 (232)
T ss_dssp CCCCSTTEEEECCCC----------------CBCSCEEEESSC-CGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGC
T ss_pred cCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCC-CcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCC
Confidence 9999999999999997 5999999999998 799999999999999 7765 89999999999999
Q ss_pred CceeEEEEEEEEEC
Q 046966 144 PPQQIIIKQTYVLY 157 (299)
Q Consensus 144 p~~~v~I~~~~v~~ 157 (299)
|..+|+|.+|+|+.
T Consensus 180 P~~~i~I~~~~vl~ 193 (232)
T 3bkp_A 180 PMTPPFIKSVDVLW 193 (232)
T ss_dssp BSSCCBEEEEEEEE
T ss_pred cCCCeEEEEEEEEc
Confidence 99999999999997
No 12
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=4.1e-47 Score=309.11 Aligned_cols=147 Identities=37% Similarity=0.705 Sum_probs=139.1
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCCC--------cCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNKY--------YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIR 77 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~--------y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~ 77 (299)
|+.|+|+||||++.||+||+||++||++++ |+|+.||||+|+|+|||||+. ++|.++.++|+.. +++| .
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~-f~dE-~ 99 (177)
T 1mzw_A 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGP-FADE-N 99 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSC-BCCC-C
T ss_pred eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCc-ccCc-c
Confidence 679999999999999999999999999998 999999999999999999985 6789999999866 6888 5
Q ss_pred cCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 78 ADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 78 ~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
..++|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|+++
T Consensus 100 ~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l 177 (177)
T 1mzw_A 100 FKLRHSAPGLLSMANSGPSTNGCQFFITCSK-CDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177 (177)
T ss_dssp CCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred cccccCCCCEEEEccCCCCCcceEEEEECCC-CCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence 7899999999999999999999999999998 79999999999999999999999999999999999999999999975
No 13
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=5.8e-47 Score=309.47 Aligned_cols=153 Identities=42% Similarity=0.757 Sum_probs=144.5
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
.|+|+|+.|+|+||||++.||+||+||++||+.++|+|+.||||+|+|+|||||+.++|.++.++|+.. +++|....++
T Consensus 26 ~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~-~~dE~~~~l~ 104 (185)
T 2hq6_A 26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAP-FKDEFHSRLR 104 (185)
T ss_dssp EEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSC-BCCCCBTTBC
T ss_pred EEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCc-cccccccCcc
Confidence 689999999999999999999999999999999999999999999999999999998899999999866 6889777899
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHH--HHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETL--TRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl--~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
|+++|+||||+.++++++|||||++.+ .++||++|+|||+|+ ||+++ ++|++.+++.+++|..+|+|.+|++++
T Consensus 105 h~~~G~lsMA~~g~~s~gSQFFIt~~~-~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~~ 180 (185)
T 2hq6_A 105 FNRRGLVAMANAGSHDNGSQFFFTLGR-ADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLF 180 (185)
T ss_dssp SCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEEE
T ss_pred cCCCeEEEEccCCCCCccceEEEECCC-CCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEeC
Confidence 999999999999999999999999998 699999999999999 88774 688889998899999999999999996
No 14
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-47 Score=311.59 Aligned_cols=150 Identities=38% Similarity=0.657 Sum_probs=140.3
Q ss_pred EEcceeEEEEecCCCChHHHHHHHHhhh-----------CCCcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccc
Q 046966 6 ETSLGDIVIDLFVDKCPRTTNNFLQHCK-----------NKYYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFV 73 (299)
Q Consensus 6 ~T~~G~i~ieL~~~~~P~~~~nF~~l~~-----------~~~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~ 73 (299)
+|+.|+|+||||++.||+||+||++||+ .++|+|+.||||+|+|||||||+. ++|.++.++|+.. ++
T Consensus 30 ~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~~-f~ 108 (192)
T 2he9_A 30 REPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGY-FK 108 (192)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSC-BC
T ss_pred CEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccCCc-cc
Confidence 5899999999999999999999999996 468999999999999999999986 6789999999866 68
Q ss_pred cccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEE
Q 046966 74 DEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQT 153 (299)
Q Consensus 74 ~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~ 153 (299)
+| ...++|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|
T Consensus 109 dE-~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~ 186 (192)
T 2he9_A 109 DE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKP-APHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDC 186 (192)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEE
T ss_pred Cc-cccCCCCCCeEEEEEeCCCCCcceEEEEEcCC-CcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEe
Confidence 88 57899999999999999999999999999998 69999999999999999999999999999999999999999999
Q ss_pred EEECC
Q 046966 154 YVLYP 158 (299)
Q Consensus 154 ~v~~p 158 (299)
+++.+
T Consensus 187 g~l~~ 191 (192)
T 2he9_A 187 GVLAT 191 (192)
T ss_dssp EECC-
T ss_pred EEEcc
Confidence 99864
No 15
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=5.6e-47 Score=308.88 Aligned_cols=148 Identities=39% Similarity=0.668 Sum_probs=138.8
Q ss_pred EEcceeEEEEecCCCChHHHHHHHHhhh-----------CCCcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccc
Q 046966 6 ETSLGDIVIDLFVDKCPRTTNNFLQHCK-----------NKYYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFV 73 (299)
Q Consensus 6 ~T~~G~i~ieL~~~~~P~~~~nF~~l~~-----------~~~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~ 73 (299)
.|+.|+|+||||++.||+||+||++||+ .++|+|+.||||+|+|+|||||+. ++|.++.++|+.. ++
T Consensus 20 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~ 98 (179)
T 2wfi_A 20 NQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGF-FE 98 (179)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSC-BC
T ss_pred CccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCCcccCCc-cc
Confidence 4899999999999999999999999997 468999999999999999999986 6789999999866 68
Q ss_pred cccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEE
Q 046966 74 DEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQT 153 (299)
Q Consensus 74 ~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~ 153 (299)
+| ...++|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|
T Consensus 99 dE-~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~ 176 (179)
T 2wfi_A 99 DE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKP-TPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176 (179)
T ss_dssp CC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEE
T ss_pred cc-ccCcCcCCCeEEEEEeCCCCCcceEEEEEcCC-CcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeC
Confidence 88 56799999999999999999999999999998 69999999999999999999999999999999999999999999
Q ss_pred EEE
Q 046966 154 YVL 156 (299)
Q Consensus 154 ~v~ 156 (299)
+++
T Consensus 177 G~l 179 (179)
T 2wfi_A 177 GEL 179 (179)
T ss_dssp EEC
T ss_pred eeC
Confidence 975
No 16
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=8.5e-47 Score=307.53 Aligned_cols=148 Identities=41% Similarity=0.649 Sum_probs=138.9
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhC--------C---CcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKN--------K---YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVD 74 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~--------~---~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~ 74 (299)
|+.|+|+||||++.||+||+||++||++ + +|+|+.||||+|+|+|||||+. ++|.++.++|+.. +++
T Consensus 18 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~d 96 (177)
T 1a58_A 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGM-FDD 96 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSSC-BCC
T ss_pred EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccCCc-ccC
Confidence 7899999999999999999999999985 4 8999999999999999999986 6789999999866 688
Q ss_pred ccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEE
Q 046966 75 EIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTY 154 (299)
Q Consensus 75 e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~ 154 (299)
| ...++|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|+
T Consensus 97 E-~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G 174 (177)
T 1a58_A 97 E-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTP-APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174 (177)
T ss_dssp C-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEE
T ss_pred c-ccCcccCCCeEEEEeeCCCCCceeEEEEECCC-CCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeE
Confidence 8 56889999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred EEC
Q 046966 155 VLY 157 (299)
Q Consensus 155 v~~ 157 (299)
++.
T Consensus 175 ~l~ 177 (177)
T 1a58_A 175 ELV 177 (177)
T ss_dssp EEC
T ss_pred EEC
Confidence 874
No 17
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=7.5e-47 Score=304.66 Aligned_cols=153 Identities=34% Similarity=0.627 Sum_probs=141.8
Q ss_pred CEEEEE-EcceeEEEEecCCCChHHHHHHHHhhh--CCC-cCCceeeEeecCcEEEecC-CCCCCCCCCCCCCCcccccc
Q 046966 1 MSVLIE-TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY-YNGCLFHNIHKDFIAQTGD-PTGTGTGGRSVYEDRFFVDE 75 (299)
Q Consensus 1 ~~v~~~-T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~-y~~~~f~ri~~~~~iq~G~-~~~~~~~~~~~~~~~~~~~e 75 (299)
|.|.+. |+.|+|+||||++.||+||+||++||+ .++ |+|+.|||++|+|++|||| ...++.++.++|+.. +++|
T Consensus 7 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~-~~dE 85 (164)
T 3pmp_A 7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK-FADE 85 (164)
T ss_dssp EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC
T ss_pred EEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcc-cccc
Confidence 456776 999999999999999999999999999 678 9999999999999999999 667799999999876 5888
Q ss_pred cccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 76 IRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 76 ~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
...++|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++ +++|..+|+|.+|++
T Consensus 86 -~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~-~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~ 162 (164)
T 3pmp_A 86 -NFQVKHTKPGLLSMANAGANTNGSQFFITTVP-TSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGT 162 (164)
T ss_dssp -CCCSCCCSTTEEEECBSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEE
T ss_pred -ccccCcCCCcEEEEeeCCCCCcccEEEEECCC-ChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeE
Confidence 78899999999999999999999999999998 699999999999999999999999998885 789999999999998
Q ss_pred EC
Q 046966 156 LY 157 (299)
Q Consensus 156 ~~ 157 (299)
+.
T Consensus 163 l~ 164 (164)
T 3pmp_A 163 VA 164 (164)
T ss_dssp C-
T ss_pred EC
Confidence 63
No 18
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=1.5e-46 Score=304.20 Aligned_cols=147 Identities=35% Similarity=0.675 Sum_probs=137.2
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhC--CC-cCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKN--KY-YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~--~~-y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+.|+|+||||++.||+||+||++||++ |+ |+|+.||||+|+|+|||||+. ++|.++.++|+.. +++| ...++|
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~-f~dE-~~~l~h 99 (172)
T 2cmt_A 22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRK-FDDE-NFQLRH 99 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC-CCCSCC
T ss_pred eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCc-cccc-ccCccc
Confidence 8999999999999999999999999985 77 999999999999999999986 6788999999766 6888 568999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.++ .+++|..+|+|.+|++++
T Consensus 100 ~~~G~lsmA~~gp~t~gSQFfIt~~~-~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~ 172 (172)
T 2cmt_A 100 EGFGVLSMANSGPNTNGSQFFICTTK-CDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGELI 172 (172)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHGGGGCC-TTCCCSSCEEEEEEEEEC
T ss_pred CCceEEEEeeCCCCCcccEEEEECCC-CCccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCCEEEEEeEeEC
Confidence 99999999999999999999999998 69999999999999999999999998887 568999999999999974
No 19
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=5.4e-47 Score=306.15 Aligned_cols=147 Identities=38% Similarity=0.719 Sum_probs=138.7
Q ss_pred EEcceeEEEEecCCCChHHHHHHHHhh--hCCC-cCCceeeEeecCcEEEecC-CCCCCCCCCCCCCCcccccccccCCC
Q 046966 6 ETSLGDIVIDLFVDKCPRTTNNFLQHC--KNKY-YNGCLFHNIHKDFIAQTGD-PTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 6 ~T~~G~i~ieL~~~~~P~~~~nF~~l~--~~~~-y~~~~f~ri~~~~~iq~G~-~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
.|+.|+|+||||++.||+||+||++|| +.++ |+|+.||||+|+|+||||| +.++|.++.++|+.. +++| .+.++
T Consensus 22 ~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~dE-~~~l~ 99 (172)
T 2haq_A 22 SEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEK-FADE-NLNVK 99 (172)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSC-BCCC-CCCSC
T ss_pred CEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCc-ccCc-CCCcc
Confidence 589999999999999999999999999 6789 9999999999999999999 567789999999866 6888 78899
Q ss_pred CCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEE
Q 046966 82 HDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVL 156 (299)
Q Consensus 82 ~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~ 156 (299)
|. +|+||||+.+|++++|||||++.+ .++||++|+|||+|++||+||++|++.+++..++|..+|+|.+|+++
T Consensus 100 h~-~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l 172 (172)
T 2haq_A 100 HF-VGALSMANAGPNTNGSQFFITTAP-TPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172 (172)
T ss_dssp CC-TTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred cC-ceEEEEccCCCCCcccEEEEECCC-CCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence 98 999999999999999999999998 69999999999999999999999999999888899999999999975
No 20
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=6.1e-47 Score=310.42 Aligned_cols=148 Identities=39% Similarity=0.715 Sum_probs=140.0
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh--CCC-cCCceeeEeecCcEEEecC-CCCCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY-YNGCLFHNIHKDFIAQTGD-PTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~-y~~~~f~ri~~~~~iq~G~-~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+.|+|+||||++.||+||+||++||+ .|+ |+|+.||||+|+||||||| ..++|.++.++|+.. +++| ...++|
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~dE-~~~l~h 104 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGER-FPDE-NFKLKH 104 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC-CCCSCC
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCc-cccc-ccCccc
Confidence 899999999999999999999999996 578 9999999999999999999 667799999999866 6888 788999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++..++|..+|+|.+|+++.
T Consensus 105 ~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l~ 178 (188)
T 3ich_A 105 YGPGWVSMANAGKDTNGSQFFITTVK-TAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIE 178 (188)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEE
T ss_pred CCCeEEEEccCCCCCcccEEEEECCC-CcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEEe
Confidence 99999999999999999999999998 699999999999999999999999999999888999999999999984
No 21
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=3.4e-46 Score=302.88 Aligned_cols=147 Identities=36% Similarity=0.650 Sum_probs=136.7
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhC--C--------CcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKN--K--------YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDE 75 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~--~--------~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e 75 (299)
|+.|+|+||||++.||+||+||++||++ | +|+|+.||||+|+|||||||+. ++|.++.++|+.. +++|
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~-f~dE 93 (173)
T 2igv_A 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEK-FPDE 93 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCc-ccCc
Confidence 4489999999999999999999999987 5 7999999999999999999986 6789999999876 6888
Q ss_pred cccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 76 IRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 76 ~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
...++|+++|+||||+.+||+++|||||++.+ .+|||++|+|||+|++||+||++|++.++ .+++|..+|+|.+|++
T Consensus 94 -~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~~g~ 170 (173)
T 2igv_A 94 -NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK-TEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQ 170 (173)
T ss_dssp -CCCSCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEEEEEEE
T ss_pred -ccccCCCCCeEEEEeeCCCCCcceEEEEEcCC-ccccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEEEEEeEE
Confidence 56899999999999999999999999999998 79999999999999999999999998887 5689999999999999
Q ss_pred EC
Q 046966 156 LY 157 (299)
Q Consensus 156 ~~ 157 (299)
++
T Consensus 171 l~ 172 (173)
T 2igv_A 171 LK 172 (173)
T ss_dssp EC
T ss_pred Ec
Confidence 85
No 22
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=2.6e-46 Score=302.74 Aligned_cols=150 Identities=39% Similarity=0.703 Sum_probs=138.7
Q ss_pred EEEEEc-----ceeEEEEecCCCChHHHHHHHHhhhC-CC--------cCCceeeEeecCcEEEecCCC-CCCCCCCCCC
Q 046966 3 VLIETS-----LGDIVIDLFVDKCPRTTNNFLQHCKN-KY--------YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVY 67 (299)
Q Consensus 3 v~~~T~-----~G~i~ieL~~~~~P~~~~nF~~l~~~-~~--------y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~ 67 (299)
|.|+++ .|+|+||||++.||+||+||++||++ ++ |+|+.||||+|+|||||||+. ++|.++.++|
T Consensus 6 v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~ 85 (170)
T 1qng_A 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIY 85 (170)
T ss_dssp EEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred EEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCcccc
Confidence 555555 89999999999999999999999984 78 999999999999999999985 6788999999
Q ss_pred CCcccccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCcee
Q 046966 68 EDRFFVDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQ 147 (299)
Q Consensus 68 ~~~~~~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~ 147 (299)
+.. +++| ...++|+++|+||||+.+||+++|||||++.+ .+|||++|+|||+|++||+||++|++.++ .+++|..+
T Consensus 86 g~~-f~dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~-~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~ 161 (170)
T 1qng_A 86 GRS-FTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVP-CPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRS 161 (170)
T ss_dssp BSC-BCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSC
T ss_pred CCc-cccc-ccccccCCCCEEEEeecCCCCcccEEEEECCC-CcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCC
Confidence 866 6888 57899999999999999999999999999998 69999999999999999999999999998 78999999
Q ss_pred EEEEEEEEE
Q 046966 148 IIIKQTYVL 156 (299)
Q Consensus 148 v~I~~~~v~ 156 (299)
|+|.+|+++
T Consensus 162 v~I~~cG~l 170 (170)
T 1qng_A 162 VVITDCGEL 170 (170)
T ss_dssp EEEEEEEEC
T ss_pred eEEEeceeC
Confidence 999999975
No 23
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=5.8e-46 Score=301.28 Aligned_cols=147 Identities=38% Similarity=0.637 Sum_probs=136.5
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh--CCC-cCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY-YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~-y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+.|+|+||||++.||+||+||++||+ .++ |+|+.||||+|+|||||||+. ++|.++.++|+.. +++| ...++|
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~dE-~~~l~h 100 (173)
T 2r99_A 23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK-FDDE-NFILKH 100 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC-CCCSCC
T ss_pred ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCc-ccCc-ccCccc
Confidence 899999999999999999999999995 577 999999999999999999986 5788999999876 6888 678999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+++|+||||+.+||+++|||||++.+ .+|||++|+|||+|++||+||++|++.+++ +++|..+|+|.+|+++.
T Consensus 101 ~~~G~lsmA~~gp~t~gSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~cG~l~ 173 (173)
T 2r99_A 101 TGPGLLSMANSGPNTNGSQFFLTCDK-TDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIADCGEYV 173 (173)
T ss_dssp CSSSEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEECC
T ss_pred CCCcEEEEccCCCCCcccEEEEECCC-CCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEEeeeEC
Confidence 99999999999999999999999998 799999999999999999999999988774 68999999999999864
No 24
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=6.3e-46 Score=299.07 Aligned_cols=147 Identities=38% Similarity=0.680 Sum_probs=137.3
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh--CCC-cCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY-YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~-y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+.|+|+||||++.||+||+||++||+ .++ |+|+.||||+|+|++||||+. ++|.++.++|+.. +++| .+.++|
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~dE-~~~l~h 92 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR-FPDE-NFTLKH 92 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC-CCCSCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCc-ccCc-cccccc
Confidence 578999999999999999999999999 889 999999999999999999985 5788899999876 6888 678999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++||+||++|++.++ .+++|..+|+|.+|+++.
T Consensus 93 ~~~G~lsmA~~gp~s~~SQFfI~~~~-~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~ 165 (165)
T 2z6w_A 93 VGPGVLSMANAGPNTNGSQFFICTIK-TDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQLS 165 (165)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEECC
T ss_pred CCCCEEEEeeCCCCCcccEEEEEcCC-CcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeEEEC
Confidence 98999999999999999999999998 79999999999999999999999998875 689999999999999863
No 25
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=3.6e-46 Score=302.01 Aligned_cols=151 Identities=26% Similarity=0.450 Sum_probs=136.1
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
|+|+|+|+.|+|+||||++.||+||+||++||+.++|+|+.||||+|+|||||||+...+. ...++. .+++|....+
T Consensus 4 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~~~-~~~~E~~~~l 80 (167)
T 3s6m_A 4 SMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLK--QKPTDA-PIANEANNGL 80 (167)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTTE--ECCCCC-CBCCCGGGCC
T ss_pred cEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCCC--CCCCCC-ccCCcccccc
Confidence 7899999999999999999999999999999999999999999999999999999875432 122333 3678877778
Q ss_pred CCCCceEEEEEc-CCCCCCcceEEEEecCCCCCCCCC--------ceEEEEeecCHHHHHHHHhcccCC----CCCCcee
Q 046966 81 KHDKVGTVGMAS-AGRDLNASQFYITLRDNLHYLDEK--------HTIFGEVAEGLETLTRINQAVVDE----ENRPPQQ 147 (299)
Q Consensus 81 ~~~~~G~l~~~~-~~~~~~~s~FfI~~~~~~~~ld~~--------~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~ 147 (299)
+| .+|+||||+ .+|++++|||||++.+ .+|||++ |+|||+|++||+||++|++.+++. +++|..+
T Consensus 81 ~~-~~G~lsmA~~~~p~t~gSQFfI~~~~-~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~ 158 (167)
T 3s6m_A 81 KN-DTYTIAMARTNDPHSATAQFFINVND-NEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDD 158 (167)
T ss_dssp CC-CTTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSC
T ss_pred cC-CccEEEEecCCCCCCccceEEEEcCC-chhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCC
Confidence 77 899999999 6799999999999998 6999998 999999999999999999999987 6899999
Q ss_pred EEEEEEEEE
Q 046966 148 IIIKQTYVL 156 (299)
Q Consensus 148 v~I~~~~v~ 156 (299)
|+|.+|.|+
T Consensus 159 v~I~~~~il 167 (167)
T 3s6m_A 159 VVIEKAVVV 167 (167)
T ss_dssp CEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999885
No 26
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=2e-45 Score=300.65 Aligned_cols=145 Identities=40% Similarity=0.679 Sum_probs=134.1
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh--CCC--------cCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY--------YNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDE 75 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~--------y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e 75 (299)
|+.|+|+||||++.||+||+||++||+ .|+ |+|+.||||+|+|||||||+. ++|.++.++|+.. +++|
T Consensus 31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g~~-f~dE 109 (186)
T 2poy_A 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSK-FRDE 109 (186)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-C-BCCC
T ss_pred EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCCCc-ccCc
Confidence 459999999999999999999999997 477 999999999999999999975 6789999999866 6888
Q ss_pred cccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEE
Q 046966 76 IRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYV 155 (299)
Q Consensus 76 ~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v 155 (299)
...++|+++|+||||+.+||+++|||||++.+ .+|||++|+|||+|++||+||++|++.++ .+++|..+|+|.+|++
T Consensus 110 -~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~v~I~~cG~ 186 (186)
T 2poy_A 110 -NFVYTHDAPFLLSMANAGPNTNGSQFFITTVP-CPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASGV 186 (186)
T ss_dssp -CCCSCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEC
T ss_pred -ccccccCCCcEEEEeeCCCCCcccEEEEECCC-CcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEEEEeCCC
Confidence 57899999999999999999999999999998 69999999999999999999999999988 6789999999999984
No 27
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=5e-46 Score=299.85 Aligned_cols=151 Identities=29% Similarity=0.523 Sum_probs=135.4
Q ss_pred EEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCC
Q 046966 2 SVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLK 81 (299)
Q Consensus 2 ~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~ 81 (299)
.|+|+|+.|+|+||||++.||+||+||++||+.|+|+|+.||||+|+|||||||+... .+.++++.. +++|....++
T Consensus 1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~-~~dE~~~~l~ 77 (164)
T 1lop_A 1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEP-IKNEANNGLK 77 (164)
T ss_dssp CEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCC-BCCCCCSSCC
T ss_pred CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCc-cccccccccc
Confidence 3899999999999999999999999999999999999999999999999999998632 134455544 6889767788
Q ss_pred CCCceEEEEEcC-CCCCCcceEEEEecCCCCCCCCC--------ceEEEEeecCHHHHHHHHhcccCC----CCCCceeE
Q 046966 82 HDKVGTVGMASA-GRDLNASQFYITLRDNLHYLDEK--------HTIFGEVAEGLETLTRINQAVVDE----ENRPPQQI 148 (299)
Q Consensus 82 ~~~~G~l~~~~~-~~~~~~s~FfI~~~~~~~~ld~~--------~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~v 148 (299)
| .+|+||||+. +|++++|||||++.+ .+|||++ |+|||+|++||+||++|++.+++. +++|..+|
T Consensus 78 ~-~~G~lsmA~~~~p~s~gSQFfI~~~~-~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v 155 (164)
T 1lop_A 78 N-TRGTLAMARTQAPHSATAQFFINVVD-NDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDV 155 (164)
T ss_dssp C-CTTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCC
T ss_pred c-CccEEEEeecCCCCCccceEEEEcCC-ccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCe
Confidence 7 6999999974 799999999999998 6999998 999999999999999999999875 57999999
Q ss_pred EEEEEEEEC
Q 046966 149 IIKQTYVLY 157 (299)
Q Consensus 149 ~I~~~~v~~ 157 (299)
+|.+|++++
T Consensus 156 ~I~~~~v~~ 164 (164)
T 1lop_A 156 IIESVTVSE 164 (164)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEeC
Confidence 999999863
No 28
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=3.1e-45 Score=300.64 Aligned_cols=148 Identities=40% Similarity=0.687 Sum_probs=139.1
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhC--C-CcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKN--K-YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~--~-~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+.|+|+||||++.||+||+||++||++ | +|+|+.||||+|+|+|||||+. ++|.++.++|+.. +++| ...++|
T Consensus 24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~de-~~~~~h 101 (185)
T 4fru_A 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGER-FPDE-NFKLKH 101 (185)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSC-BCCC-CCCSCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCc-cCcc-ccccCc
Confidence 5699999999999999999999999986 5 7999999999999999999976 6789999999876 5888 678999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
+++|+||||+.++++++|||||++.+ .+|||++|+|||+|++||+||++|++.+++.+++|..+|+|.+|+++.
T Consensus 102 ~~~G~lsma~~gp~t~~SQFfI~~~~-~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l~ 175 (185)
T 4fru_A 102 YGPGWVSMANAGKDTNGSQFFITTVK-TAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIE 175 (185)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEE
T ss_pred CCCeEEEEeeCCCCCcceEEEEEeCC-CcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceEEe
Confidence 99999999999999999999999998 799999999999999999999999999999999999999999999985
No 29
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=300.02 Aligned_cols=152 Identities=36% Similarity=0.630 Sum_probs=139.1
Q ss_pred EEEEEEc-----ceeEEEEecCCCChHHHHHHHHhhhCCC---cCCceeeEeecCcEEEecCC-CCCCCCCCCCCCCccc
Q 046966 2 SVLIETS-----LGDIVIDLFVDKCPRTTNNFLQHCKNKY---YNGCLFHNIHKDFIAQTGDP-TGTGTGGRSVYEDRFF 72 (299)
Q Consensus 2 ~v~~~T~-----~G~i~ieL~~~~~P~~~~nF~~l~~~~~---y~~~~f~ri~~~~~iq~G~~-~~~~~~~~~~~~~~~~ 72 (299)
.|.|+|+ .|+|+||||++.||+||+||++||++++ |+|+.||||+|+|+|||||+ ..+|.++.++|+.. +
T Consensus 24 ~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-~ 102 (184)
T 3rdd_A 24 TVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEK-F 102 (184)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSC-B
T ss_pred EEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCc-c
Confidence 3677766 9999999999999999999999998755 99999999999999999994 56788999999876 5
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCceeEEEEE
Q 046966 73 VDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPPQQIIIKQ 152 (299)
Q Consensus 73 ~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~ 152 (299)
++| ...++|+.+|+|+||+.+|++++|||||++.+ .++||++|+|||+|++||+||++|++.++ .+++|..+|+|.+
T Consensus 103 ~de-~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~-~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~P~~~v~I~~ 179 (184)
T 3rdd_A 103 EDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAK-TEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIAD 179 (184)
T ss_dssp CCC-CCCSCCCSTTEEEECCSSTTCBSSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEEEE
T ss_pred cCc-ccccccCCCcEEEEEeCCCCCcccEEEEEeCC-chhhCCCceEEEEEecCHHHHHHHHhcCC-CCCCCcCCeEEEe
Confidence 777 57899999999999999999999999999998 69999999999999999999999988876 5789999999999
Q ss_pred EEEEC
Q 046966 153 TYVLY 157 (299)
Q Consensus 153 ~~v~~ 157 (299)
|++++
T Consensus 180 cG~l~ 184 (184)
T 3rdd_A 180 CGQLE 184 (184)
T ss_dssp EEECC
T ss_pred CeEEC
Confidence 99974
No 30
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=2.4e-46 Score=303.24 Aligned_cols=147 Identities=41% Similarity=0.657 Sum_probs=111.4
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh--CCC-cCCceeeEeecCcEEEecC-CCCCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY-YNGCLFHNIHKDFIAQTGD-PTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~-y~~~~f~ri~~~~~iq~G~-~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|++|+|+||||++.||+||+||++||+ .|+ |+|+.||||+|+|++|||| +.++|.++.++|+.. +++| ...++|
T Consensus 19 T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~dE-~~~~~h 96 (172)
T 2c3b_A 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDK-FADE-NFSRKH 96 (172)
T ss_dssp CEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC------------------------CHHH
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCc-ccCc-cccccc
Confidence 888999999999999999999999999 567 9999999999999999999 777899999999876 6888 678889
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeec--CHHHHHHHHhcccCCCC-CCceeEEEEEEEEE
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAE--GLETLTRINQAVVDEEN-RPPQQIIIKQTYVL 156 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~~~~~~-~p~~~v~I~~~~v~ 156 (299)
+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|++ ||+||++|++.+++..+ +|..+|+|.+|+++
T Consensus 97 ~~~G~lsmA~~gp~t~gSQFfIt~~~-~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 97 DKKGILSMANAGPNTNGSQFFITTAV-TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp HHTCEEEEC---------CEEEECSC-CTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred CCCeEEEEeeCCCCCcccEEEEECCC-CCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence 99999999999999999999999998 6999999999999999 99999999999997655 99999999999974
No 31
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=2.5e-45 Score=307.81 Aligned_cols=147 Identities=35% Similarity=0.627 Sum_probs=138.0
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhhCC--------CcCCceeeEeecCcEEEecCCC-CCCCCCCCCCCCcccccccc
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCKNK--------YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRSVYEDRFFVDEIR 77 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~~~--------~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~~~~~~~~~~e~~ 77 (299)
|+.|+|+||||++.||+||+||++||+++ +|+|+.||||+|+|+|||||+. ++|.++.++|+.. +++| .
T Consensus 71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~-f~dE-~ 148 (229)
T 1z81_A 71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEK-FDDE-N 148 (229)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSC-CCCC-C
T ss_pred eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCc-cccc-c
Confidence 45999999999999999999999999987 6999999999999999999985 7789999999866 6888 5
Q ss_pred cCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEee--cCHHHHHHHHhcccCCC-CCCceeEEEEEEE
Q 046966 78 ADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVA--EGLETLTRINQAVVDEE-NRPPQQIIIKQTY 154 (299)
Q Consensus 78 ~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~--~G~~vl~~i~~~~~~~~-~~p~~~v~I~~~~ 154 (299)
+.++|+++|+||||+.+|++++|||||++.+ .+|||++|+|||+|+ +||+||++|++.+++.+ ++|..+|+|.+|+
T Consensus 149 ~~l~h~~~G~LsMAn~gpntngSQFFIt~~~-~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG 227 (229)
T 1z81_A 149 FDIKHDKEGLLSMANSGPNTNGCQFFITTKK-CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227 (229)
T ss_dssp CCSCCCSTTEEEECCSSSSCCCSCEEEESSC-CGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEE
T ss_pred cccccCCCcEEEeccCCCCCcccEEEEECCC-CcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCe
Confidence 7899999999999999999999999999998 799999999999999 99999999999999887 9999999999999
Q ss_pred EE
Q 046966 155 VL 156 (299)
Q Consensus 155 v~ 156 (299)
++
T Consensus 228 ~l 229 (229)
T 1z81_A 228 EL 229 (229)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 32
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=1.8e-45 Score=297.13 Aligned_cols=152 Identities=29% Similarity=0.484 Sum_probs=134.9
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCC
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADL 80 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~ 80 (299)
..|+|+|+.|+|+||||+++||+||+||++||+.++|+|+.||||+|+|||||||+...+.+ ..++. .+++|....+
T Consensus 5 ~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~--~~~g~-~~~dE~~~~l 81 (166)
T 1v9t_A 5 PHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNP-PIKNEADNGL 81 (166)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCCB--CCCCC-CBCCCGGGSC
T ss_pred eEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCCC--CCCCC-cccccccccc
Confidence 36999999999999999999999999999999999999999999999999999998765332 22333 4688866666
Q ss_pred CCCCceEEEEEcC-CCCCCcceEEEEecCCCCCCCCC-----ceEEEEeecCHHHHHHHHhcccCC----CCCCceeEEE
Q 046966 81 KHDKVGTVGMASA-GRDLNASQFYITLRDNLHYLDEK-----HTIFGEVAEGLETLTRINQAVVDE----ENRPPQQIII 150 (299)
Q Consensus 81 ~~~~~G~l~~~~~-~~~~~~s~FfI~~~~~~~~ld~~-----~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~v~I 150 (299)
+| .+|+||||+. +||+++|||||++.+ .+|||++ |+|||+|++||+||++|++.+++. .++|..+|+|
T Consensus 82 ~~-~~G~lsmA~~~~p~t~gSQFfI~~~~-~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I 159 (166)
T 1v9t_A 82 RN-TRGTIAMARTADKDSATSQFFINVAD-NAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159 (166)
T ss_dssp CC-CTTEEEECCCSSTTCBCSCEEEESSC-CGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBE
T ss_pred cC-CceEEEEeecCCCCCccceEEEEeCC-ccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEE
Confidence 65 7999999997 699999999999998 6999998 999999999999999999999876 4789999999
Q ss_pred EEEEEEC
Q 046966 151 KQTYVLY 157 (299)
Q Consensus 151 ~~~~v~~ 157 (299)
.+|.|++
T Consensus 160 ~~~~v~~ 166 (166)
T 1v9t_A 160 LSATVLP 166 (166)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999863
No 33
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=9.2e-45 Score=298.71 Aligned_cols=148 Identities=42% Similarity=0.695 Sum_probs=137.3
Q ss_pred EcceeEEEEecCCCChHHHHHHHHhhh--CCC-cCCceeeEeecCcEEEecC-CCCCCCCCCCCCCCcccccccccCCCC
Q 046966 7 TSLGDIVIDLFVDKCPRTTNNFLQHCK--NKY-YNGCLFHNIHKDFIAQTGD-PTGTGTGGRSVYEDRFFVDEIRADLKH 82 (299)
Q Consensus 7 T~~G~i~ieL~~~~~P~~~~nF~~l~~--~~~-y~~~~f~ri~~~~~iq~G~-~~~~~~~~~~~~~~~~~~~e~~~~~~~ 82 (299)
|+.|+|+||||++.||+||+||++||+ .++ |+|+.||||+|+|++|||| ...++.++.++|+.. +++| ...++|
T Consensus 39 t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~-f~dE-~~~l~h 116 (193)
T 3k2c_A 39 ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEK-FPDE-NFELKH 116 (193)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSC-BCCC-CCCSCC
T ss_pred EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCc-cccc-cccccc
Confidence 889999999999999999999999998 566 9999999999999999999 556789999999876 5788 778999
Q ss_pred CCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCc--eeEEEEEEEEECC
Q 046966 83 DKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPP--QQIIIKQTYVLYP 158 (299)
Q Consensus 83 ~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~--~~v~I~~~~v~~p 158 (299)
+++|+|+||+.+|++++|||||++.+ .++||++|+|||+|++||+||++|++.+++ +++|. .+|+|.+|+++.+
T Consensus 117 ~~~G~lsmAn~gp~t~gSQFFIt~~~-~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~~cG~l~~ 192 (193)
T 3k2c_A 117 TKEGILSMANCGAHTNGSQFFITLGK-TQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIRDCGVLGS 192 (193)
T ss_dssp CSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEEEEEECC-
T ss_pred CCCcEEEEEeCCCCCCccEEEEECCC-CcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEEEceEeCC
Confidence 99999999999999999999999998 699999999999999999999999998886 67999 9999999999873
No 34
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=3.4e-45 Score=309.39 Aligned_cols=156 Identities=27% Similarity=0.449 Sum_probs=136.1
Q ss_pred EEEEE-EcceeEEEEecCCCChHHHHHHHHhhhC-----------------C--C-cCCceeeEeecCcEEEecC-CCCC
Q 046966 2 SVLIE-TSLGDIVIDLFVDKCPRTTNNFLQHCKN-----------------K--Y-YNGCLFHNIHKDFIAQTGD-PTGT 59 (299)
Q Consensus 2 ~v~~~-T~~G~i~ieL~~~~~P~~~~nF~~l~~~-----------------~--~-y~~~~f~ri~~~~~iq~G~-~~~~ 59 (299)
.|.|+ |+.|+|+||||++.||+||+||++||++ | + |+|+.||||+++||||||| +.++
T Consensus 20 di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g~ 99 (234)
T 2ose_A 20 DIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSN 99 (234)
T ss_dssp EEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC---
T ss_pred EEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCCC
Confidence 45555 9999999999999999999999999985 4 6 9999999999999999999 5778
Q ss_pred CCCCCCCCCCccccccc-ccCCCCCCceEEEEEc----CCCCCCcceEEEEecCC-----CCCCCCCceEEEEeecCHHH
Q 046966 60 GTGGRSVYEDRFFVDEI-RADLKHDKVGTVGMAS----AGRDLNASQFYITLRDN-----LHYLDEKHTIFGEVAEGLET 129 (299)
Q Consensus 60 ~~~~~~~~~~~~~~~e~-~~~~~~~~~G~l~~~~----~~~~~~~s~FfI~~~~~-----~~~ld~~~~vfG~V~~G~~v 129 (299)
|.+|.++|+....+.++ .+.++|+++|+||||+ .+|++++|||||++.+. ++|||++|+|||+|++||+|
T Consensus 100 G~Gg~siyg~~~~p~~f~~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdV 179 (234)
T 2ose_A 100 GSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDV 179 (234)
T ss_dssp -CCCCCTTTTCCBCCCCCSCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHH
T ss_pred CCCCccccCCccCcccccCcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHH
Confidence 99999999876212111 3579999999999999 89999999999999973 59999999999999999999
Q ss_pred HHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 130 LTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 130 l~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
|++|++.+++.+++|..+|+|.+|+++.
T Consensus 180 v~~I~~~~t~~~~~P~~~V~I~~~~~l~ 207 (234)
T 2ose_A 180 LDKINSMIKPYAGRKYPTFSIGKCGAYL 207 (234)
T ss_dssp HHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred HHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence 9999999999889999999999999987
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=2.6e-41 Score=308.79 Aligned_cols=152 Identities=38% Similarity=0.676 Sum_probs=142.0
Q ss_pred EEEEEc-----ceeEEEEecCCCChHHHHHHHHhhhC--------C---CcCCceeeEeecCcEEEecCCC-CCCCCCCC
Q 046966 3 VLIETS-----LGDIVIDLFVDKCPRTTNNFLQHCKN--------K---YYNGCLFHNIHKDFIAQTGDPT-GTGTGGRS 65 (299)
Q Consensus 3 v~~~T~-----~G~i~ieL~~~~~P~~~~nF~~l~~~--------~---~y~~~~f~ri~~~~~iq~G~~~-~~~~~~~~ 65 (299)
|.|+|+ .|+|+||||++.||+||+||+.||++ | +|+|+.||||+|+|||||||++ ++|+||.+
T Consensus 18 v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~~ 97 (370)
T 1ihg_A 18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGES 97 (370)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCB
T ss_pred EEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCCC
Confidence 677776 89999999999999999999999998 6 6999999999999999999988 77999999
Q ss_pred CCCCcccccccccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCCCCceEEEEeecCHHHHHHHHhcccCCCCCCc
Q 046966 66 VYEDRFFVDEIRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLDEKHTIFGEVAEGLETLTRINQAVVDEENRPP 145 (299)
Q Consensus 66 ~~~~~~~~~e~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~ 145 (299)
+|+.. |++| ...++|+.+|+||||+.+||+++||||||+.+ .+|||++|+|||+|++||+||++|+..+++. ++|.
T Consensus 98 ~~~~~-~~~e-~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~-~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~ 173 (370)
T 1ihg_A 98 IYGEK-FEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVP-TPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA 173 (370)
T ss_dssp TTBSC-BCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSC-CGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred CCCCC-cCCC-cCCcCCCCCeEEEEeeCCCCCCCceEEEeCCC-CcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence 99876 6888 56899999999999999999999999999998 6999999999999999999999999998876 8999
Q ss_pred eeEEEEEEEEECC
Q 046966 146 QQIIIKQTYVLYP 158 (299)
Q Consensus 146 ~~v~I~~~~v~~p 158 (299)
.+|+|.+|+++..
T Consensus 174 ~~v~I~~~g~l~~ 186 (370)
T 1ihg_A 174 KLCVIAECGELKE 186 (370)
T ss_dssp SCEEEEEEEEECT
T ss_pred eeEEEEEEEEecc
Confidence 9999999999973
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=5.1e-38 Score=279.46 Aligned_cols=143 Identities=25% Similarity=0.391 Sum_probs=122.3
Q ss_pred EEEEEEc--------ceeEEEEecCCCChHHHHHHHHhhhCCCcCCceeeEeecCcEEEecCCCCCCCC-----------
Q 046966 2 SVLIETS--------LGDIVIDLFVDKCPRTTNNFLQHCKNKYYNGCLFHNIHKDFIAQTGDPTGTGTG----------- 62 (299)
Q Consensus 2 ~v~~~T~--------~G~i~ieL~~~~~P~~~~nF~~l~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~----------- 62 (299)
+|.|+|+ .|+|+|+||++.||+||+||++||+.+||+|+.|||| ++|||||||+.++|.|
T Consensus 172 ~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g~~~~ 250 (369)
T 3rfy_A 172 SVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRT 250 (369)
T ss_dssp EEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCCCCCS
T ss_pred EEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccCcCcc
Confidence 5778776 9999999999999999999999999999999999999 9999999999887665
Q ss_pred ----------CCCCCCCccccccc----ccCCCCCCceEEEEEcC--CCCCCcceEEEEecC------CCCCCCCCceEE
Q 046966 63 ----------GRSVYEDRFFVDEI----RADLKHDKVGTVGMASA--GRDLNASQFYITLRD------NLHYLDEKHTIF 120 (299)
Q Consensus 63 ----------~~~~~~~~~~~~e~----~~~~~~~~~G~l~~~~~--~~~~~~s~FfI~~~~------~~~~ld~~~~vf 120 (299)
+.++|+.. +++|. .+.++|+.+|+||||+. +||+++|||||++.+ .++|||++|+||
T Consensus 251 iP~E~~~~G~g~piyg~~-fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVF 329 (369)
T 3rfy_A 251 VPLEIMVTGEKTPFYGST-LEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVF 329 (369)
T ss_dssp SSSSSCSSSSCCSCCCSS-TGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEE
T ss_pred cCccccccCCCCCcCCCc-cccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEE
Confidence 34555544 35542 45788999999999998 899999999999952 379999999999
Q ss_pred EEeecCHHHHHHHHhcccCCCCCCceeEEEEEEEEEC
Q 046966 121 GEVAEGLETLTRINQAVVDEENRPPQQIIIKQTYVLY 157 (299)
Q Consensus 121 G~V~~G~~vl~~i~~~~~~~~~~p~~~v~I~~~~v~~ 157 (299)
|+|++||+||++|++.. .|.++.|+.
T Consensus 330 G~VveGmdVVdkI~~GD-----------~I~sv~I~~ 355 (369)
T 3rfy_A 330 GYVTDNEDFLADLKVGD-----------VIESIQVVS 355 (369)
T ss_dssp EEEEESTTGGGGCCTTC-----------EEEEEEEEE
T ss_pred EEEecCHHHHHHHhCCC-----------ceEEEEEec
Confidence 99999999999997642 267777765
No 37
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=141.99 Aligned_cols=82 Identities=28% Similarity=0.448 Sum_probs=79.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
..+++|||+|||+++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 87
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=140.74 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=81.2
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|.+++|++++.+++++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 98654
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.4e-19 Score=127.86 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=78.8
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
+++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|+..|||..++|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred cc
Q 046966 291 VS 292 (299)
Q Consensus 291 ~~ 292 (299)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=136.53 Aligned_cols=84 Identities=19% Similarity=0.352 Sum_probs=78.0
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC-CceeCCeEEEEEec
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN-NALIDDRRICVDFS 288 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~-~~~i~g~~l~v~~a 288 (299)
+.+|||+|||+++++++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|++|++.|+ +..++|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999998874 56799999999999
Q ss_pred CCcccc
Q 046966 289 QSVSKI 294 (299)
Q Consensus 289 ~~~~~~ 294 (299)
+++++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 988654
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=128.88 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=77.4
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
++.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCc
Q 046966 289 QSV 291 (299)
Q Consensus 289 ~~~ 291 (299)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=131.71 Aligned_cols=88 Identities=23% Similarity=0.381 Sum_probs=82.8
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..||+..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
+++++.+.
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99987643
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=4e-19 Score=130.50 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=81.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
|+++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 046966 290 SVSKI 294 (299)
Q Consensus 290 ~~~~~ 294 (299)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87654
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-19 Score=128.57 Aligned_cols=85 Identities=31% Similarity=0.416 Sum_probs=80.6
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...++.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCC
Q 046966 286 DFSQS 290 (299)
Q Consensus 286 ~~a~~ 290 (299)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=132.35 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCC--eEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc----eeCCeE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGT--VVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA----LIDDRR 282 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~--i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~----~i~g~~ 282 (299)
..-.+|||+|||+.+++++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|++|++.||+. .++||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34578999999999999999999999995 568999999999999999999999999999999999996 599999
Q ss_pred EEEEecCC
Q 046966 283 ICVDFSQS 290 (299)
Q Consensus 283 l~v~~a~~ 290 (299)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999986
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=1.2e-18 Score=132.27 Aligned_cols=88 Identities=26% Similarity=0.441 Sum_probs=82.5
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+.+++++|+++|++||.|..++++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
+++++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99977543
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=128.94 Aligned_cols=86 Identities=27% Similarity=0.358 Sum_probs=81.1
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++.||+..++|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred ecCCccc
Q 046966 287 FSQSVSK 293 (299)
Q Consensus 287 ~a~~~~~ 293 (299)
+++++.+
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9998754
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=132.46 Aligned_cols=89 Identities=26% Similarity=0.328 Sum_probs=83.4
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33457899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCcccc
Q 046966 286 DFSQSVSKI 294 (299)
Q Consensus 286 ~~a~~~~~~ 294 (299)
.+++++++.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999987654
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.4e-19 Score=126.62 Aligned_cols=82 Identities=33% Similarity=0.476 Sum_probs=78.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 046966 288 SQ 289 (299)
Q Consensus 288 a~ 289 (299)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 50
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=129.64 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=80.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ |++..++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999998899999999999999999999998 999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9987543
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=129.76 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEE--------EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc
Q 046966 205 ADVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS--------AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA 276 (299)
Q Consensus 205 ~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~ 276 (299)
....++.++|||+|||+++++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEecC
Q 046966 277 LIDDRRICVDFSQ 289 (299)
Q Consensus 277 ~i~g~~l~v~~a~ 289 (299)
.++|+.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=132.09 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=82.8
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC------CceeCC
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN------NALIDD 280 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~------~~~i~g 280 (299)
...+.++|||+|||+++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|| +..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34568899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred eEEEEEecCCcccc
Q 046966 281 RRICVDFSQSVSKI 294 (299)
Q Consensus 281 ~~l~v~~a~~~~~~ 294 (299)
+.|+|+++.++.+.
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999987644
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=131.29 Aligned_cols=87 Identities=31% Similarity=0.440 Sum_probs=82.3
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=129.84 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=81.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 046966 289 QSVSKI 294 (299)
Q Consensus 289 ~~~~~~ 294 (299)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987643
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=128.72 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=81.2
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
++.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCccc
Q 046966 289 QSVSK 293 (299)
Q Consensus 289 ~~~~~ 293 (299)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 98754
No 56
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=130.66 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCC-CCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRT-GESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
..+.++|||+|||+.+++++|+++|++|| |..+.++.++.+ ++++|||||+|.+.++|++|+ .||+..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45679999999999999999999999999 999999999887 999999999999999999999 999999999999999
Q ss_pred ecCCcccccc
Q 046966 287 FSQSVSKIWK 296 (299)
Q Consensus 287 ~a~~~~~~~~ 296 (299)
+++++....+
T Consensus 90 ~a~~~~~~~~ 99 (104)
T 1wi8_A 90 VADQAQDKDS 99 (104)
T ss_dssp ECCCCCCCCC
T ss_pred EccCCCCCCC
Confidence 9998765433
No 57
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=9e-19 Score=132.95 Aligned_cols=87 Identities=31% Similarity=0.486 Sum_probs=82.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987543
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.3e-20 Score=135.24 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=81.1
Q ss_pred CCceEEEEcCCC------CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC-eE
Q 046966 210 PDNVLFVCQLNP------VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD-RR 282 (299)
Q Consensus 210 ~~~~v~v~nL~~------~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g-~~ 282 (299)
.+++|||+|||+ ++++++|+++|++||.|.++++++++.||+++|||||+|.+.++|++|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEecCCcccc
Q 046966 283 ICVDFSQSVSKI 294 (299)
Q Consensus 283 l~v~~a~~~~~~ 294 (299)
|+|.++.++.+.
T Consensus 85 l~V~~a~~~~~~ 96 (100)
T 3ns6_A 85 LFLYTMKDVERY 96 (100)
T ss_dssp CEEEESHHHHHH
T ss_pred EEEEECchhhhh
Confidence 999999987654
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=131.30 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=131.49 Aligned_cols=86 Identities=26% Similarity=0.310 Sum_probs=81.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
+++..+
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 997654
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=127.21 Aligned_cols=84 Identities=26% Similarity=0.404 Sum_probs=79.4
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...++.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34467889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecC
Q 046966 286 DFSQ 289 (299)
Q Consensus 286 ~~a~ 289 (299)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.9e-18 Score=128.89 Aligned_cols=86 Identities=26% Similarity=0.394 Sum_probs=80.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC---eEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD---RRIC 284 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g---~~l~ 284 (299)
.++.++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.||+..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4568999999999999999999999999999999999996 89999999999999999999999999999998 9999
Q ss_pred EEecCCcccc
Q 046966 285 VDFSQSVSKI 294 (299)
Q Consensus 285 v~~a~~~~~~ 294 (299)
|.+++++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999987543
No 63
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=130.18 Aligned_cols=86 Identities=29% Similarity=0.478 Sum_probs=81.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEE-EEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSA-EILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+.++|||+|||+++++++|+++|++||.|..+ +++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9987543
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=128.43 Aligned_cols=87 Identities=28% Similarity=0.410 Sum_probs=81.0
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
....+.++|||+|||+.+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 33457899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred EecCCcccc
Q 046966 286 DFSQSVSKI 294 (299)
Q Consensus 286 ~~a~~~~~~ 294 (299)
.+++++.+.
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999987644
No 65
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=1.1e-18 Score=132.61 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
...+|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|++..++|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999984 4589999999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=130.92 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=81.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.4e-19 Score=131.29 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCC--CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFG--TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 68
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.9e-18 Score=127.49 Aligned_cols=84 Identities=25% Similarity=0.443 Sum_probs=79.3
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++|| |..++++.++.+++++|||||+|.+.++|++|+ .||+..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 999999999889999999999999999999999 8999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++.+
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 998754
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=130.22 Aligned_cols=87 Identities=29% Similarity=0.454 Sum_probs=82.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..++|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=128.02 Aligned_cols=85 Identities=27% Similarity=0.422 Sum_probs=79.7
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCC---CCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYR---TGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
.+.++|||+|||+++++++|+++|++||.|..+.++.++. ++.++|||||+|.+.++|++|++.||+..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4679999999999999999999999999999999998866 6699999999999999999999999999999999999
Q ss_pred EecCCccc
Q 046966 286 DFSQSVSK 293 (299)
Q Consensus 286 ~~a~~~~~ 293 (299)
++++++.+
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99998754
No 71
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=129.60 Aligned_cols=88 Identities=17% Similarity=0.406 Sum_probs=82.1
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeec-CCCCCeeeEEEEEecCHHHHHHHHHHh-CCceeCCeEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRD-YRTGESLCYAFVEFEKREACEQAYFKM-NNALIDDRRIC 284 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~al~~l-~~~~i~g~~l~ 284 (299)
...+.++|||+|||+.+++++|+++|++||.|..++++.+ +.++.++|||||+|.+.++|++|+..| |+..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456899999999999999999999999999999999998 779999999999999999999999999 99999999999
Q ss_pred EEecCCcccc
Q 046966 285 VDFSQSVSKI 294 (299)
Q Consensus 285 v~~a~~~~~~ 294 (299)
|.+++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987543
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.3e-18 Score=131.01 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
++++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98764
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=128.44 Aligned_cols=85 Identities=22% Similarity=0.394 Sum_probs=80.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeE-EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVV-SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRR---- 282 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~---- 282 (299)
..+.++|||+|||+++++++|+++|++||.|. .++++.++.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEecCCcc
Q 046966 283 ICVDFSQSVS 292 (299)
Q Consensus 283 l~v~~a~~~~ 292 (299)
|+|.++++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998764
No 74
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.1e-18 Score=134.63 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=82.3
Q ss_pred CCCCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 204 DADVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 204 ~~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
......+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 33444568899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecCCcc
Q 046966 284 CVDFSQSVS 292 (299)
Q Consensus 284 ~v~~a~~~~ 292 (299)
.|+++.++.
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999998654
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.5e-18 Score=129.71 Aligned_cols=87 Identities=25% Similarity=0.340 Sum_probs=81.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee---CCeEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI---DDRRIC 284 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i---~g~~l~ 284 (299)
..+.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999988 899999
Q ss_pred EEecCCcccc
Q 046966 285 VDFSQSVSKI 294 (299)
Q Consensus 285 v~~a~~~~~~ 294 (299)
|.+++++.+.
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999987643
No 76
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=129.99 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=82.1
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeE--------EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVV--------SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI 278 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i 278 (299)
...+.++|||+|||+++++++|+++|++||.|. .++++.++.+++++|||||+|.+.++|++|++.||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345689999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred CCeEEEEEecCCcccc
Q 046966 279 DDRRICVDFSQSVSKI 294 (299)
Q Consensus 279 ~g~~l~v~~a~~~~~~ 294 (299)
.|+.|+|++++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987543
No 77
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=124.12 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=78.1
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCC-eeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGE-SLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
..++|||+|||+++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999877666 8999999999999999999999999999999999999
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
.+.+
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 78
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=5.5e-18 Score=121.96 Aligned_cols=80 Identities=28% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4568999999999999999999999999999999999998899999999999999999999995 488899999999987
Q ss_pred c
Q 046966 288 S 288 (299)
Q Consensus 288 a 288 (299)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 79
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=131.29 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=79.5
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCccc
Q 046966 289 QSVSK 293 (299)
Q Consensus 289 ~~~~~ 293 (299)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=128.80 Aligned_cols=86 Identities=22% Similarity=0.363 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhccc-CCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce-eCCeEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQ-FGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL-IDDRRICV 285 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~-i~g~~l~v 285 (299)
..+.++|||+|||+++++++|+++|++ ||.|..++++.++ ++.++|||||+|.+.++|.+|++.|++.. ++|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356799999999999999999999999 9999999999997 99999999999999999999999999999 99999999
Q ss_pred EecCCcccc
Q 046966 286 DFSQSVSKI 294 (299)
Q Consensus 286 ~~a~~~~~~ 294 (299)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876543
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=5.1e-18 Score=135.83 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=81.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCccc
Q 046966 289 QSVSK 293 (299)
Q Consensus 289 ~~~~~ 293 (299)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87643
No 82
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=124.36 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=80.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+. +++.++|+.|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999997 57899999999999
Q ss_pred cCCcccccc
Q 046966 288 SQSVSKIWK 296 (299)
Q Consensus 288 a~~~~~~~~ 296 (299)
+.++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cqg_A 90 PNSKQSQDS 98 (103)
T ss_dssp CCTTCCCCC
T ss_pred cCCCCcCCC
Confidence 998765433
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=5.1e-18 Score=127.00 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=78.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCC
Q 046966 288 SQS 290 (299)
Q Consensus 288 a~~ 290 (299)
+.+
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 864
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=124.83 Aligned_cols=82 Identities=27% Similarity=0.354 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..++++.++ +++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3467899999999999999999999999999999999996 499999999999999999999999999999999999999
Q ss_pred cCC
Q 046966 288 SQS 290 (299)
Q Consensus 288 a~~ 290 (299)
+++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 85
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=137.51 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCC--CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFG--TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...++|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|+..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998753
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.1e-18 Score=133.64 Aligned_cols=87 Identities=32% Similarity=0.458 Sum_probs=82.1
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...++.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCcc
Q 046966 286 DFSQSVS 292 (299)
Q Consensus 286 ~~a~~~~ 292 (299)
+++++++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 87
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=126.28 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=79.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+..++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45678999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
++.+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98653
No 88
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=132.73 Aligned_cols=87 Identities=24% Similarity=0.344 Sum_probs=82.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=4.5e-18 Score=122.85 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=77.3
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|+ .||+..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 9999999999999999987
Q ss_pred c
Q 046966 291 V 291 (299)
Q Consensus 291 ~ 291 (299)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.4e-18 Score=130.29 Aligned_cols=82 Identities=30% Similarity=0.519 Sum_probs=77.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 046966 288 SQ 289 (299)
Q Consensus 288 a~ 289 (299)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 91
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-18 Score=128.62 Aligned_cols=84 Identities=31% Similarity=0.419 Sum_probs=79.2
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.|++ .+.|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.+..
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97653
No 92
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-18 Score=124.61 Aligned_cols=85 Identities=22% Similarity=0.311 Sum_probs=78.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..|+++.++. .++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45679999999999999999999999999999999999853 3689999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9987543
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=123.38 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=78.9
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
....+.++|||+|||+++++++|+++|++||.|..++++.++. .++|||||+|.+.++|++|+..||+..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456689999999999999999999999999999999998853 38999999999999999999999999999999999
Q ss_pred EecCCccc
Q 046966 286 DFSQSVSK 293 (299)
Q Consensus 286 ~~a~~~~~ 293 (299)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99998753
No 94
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=2.1e-18 Score=126.23 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=76.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34578999999999999999999999999999888998888999999999999999999999999999999999999999
Q ss_pred cCC
Q 046966 288 SQS 290 (299)
Q Consensus 288 a~~ 290 (299)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 875
No 95
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=121.56 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=78.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|||+|||+++++++|+++|++| .|..++++.+ .+|+++|||||+|.+.++|++|++ ||+..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 799999999999999999999999 999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++.+
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 998753
No 96
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=124.71 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHH----HhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLH----VIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
....++|||+|||+++++++|+ ++|++||.|.+++++.++.+ +|||||+|.+.++|++|++.|||..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3457899999999999999999 99999999999999988655 8899999999999999999999999999999
Q ss_pred EEEecCCccc
Q 046966 284 CVDFSQSVSK 293 (299)
Q Consensus 284 ~v~~a~~~~~ 293 (299)
+|++++++..
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999997653
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=129.86 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=80.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 8754
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=5.4e-18 Score=123.29 Aligned_cols=84 Identities=27% Similarity=0.283 Sum_probs=78.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|..+.++.+ +++++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 998754
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-19 Score=125.41 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46899999999999999999999999999999999999889999999999999999999999999999999999988776
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 100
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=7.7e-18 Score=136.10 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.++.
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98654
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=126.73 Aligned_cols=86 Identities=27% Similarity=0.324 Sum_probs=81.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+.. ++..++|+.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987543
No 102
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-17 Score=124.64 Aligned_cols=84 Identities=30% Similarity=0.351 Sum_probs=78.8
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++.||+..++|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34568899999999999999999999999999999999996 69999999999999999999999999999999999999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99754
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=128.65 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=76.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecC-CCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDY-RTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....++|||+|||+++++++|+++|++|| |.+++++.++ .+|+++|||||+|.+.++|.+|+ .|+|..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45689999999999999999999999999 9999999987 58999999999999999999999 899999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 999865
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=5.5e-18 Score=127.39 Aligned_cols=86 Identities=22% Similarity=0.299 Sum_probs=77.0
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+..+ +..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999876 599999999999
Q ss_pred ecCCccc
Q 046966 287 FSQSVSK 293 (299)
Q Consensus 287 ~a~~~~~ 293 (299)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9998753
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=123.62 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce--eCCeE
Q 046966 205 ADVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL--IDDRR 282 (299)
Q Consensus 205 ~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~--i~g~~ 282 (299)
....+|+++|||+|||+.+++++|+++|++||.|.++++++ +||||||+|.+.++|.+|++.|++.. +.|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34456889999999999999999999999999999999875 35899999999999999999999875 78999
Q ss_pred EEEEecCCcc
Q 046966 283 ICVDFSQSVS 292 (299)
Q Consensus 283 l~v~~a~~~~ 292 (299)
|.|+||+++.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999998764
No 106
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=125.47 Aligned_cols=83 Identities=27% Similarity=0.466 Sum_probs=78.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee--------C
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI--------D 279 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i--------~ 279 (299)
..+.++|||+|||+++++++|+++|++||.|..++++.++ ++.++|||||+|.+.++|++|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999999999999999999999999999997 999999999999999999999999999999 6
Q ss_pred CeEEEEEecCCc
Q 046966 280 DRRICVDFSQSV 291 (299)
Q Consensus 280 g~~l~v~~a~~~ 291 (299)
+++|.|.|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999975
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.9e-18 Score=124.83 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=74.5
Q ss_pred CCCCceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc--eeCCeEEE
Q 046966 208 KPPDNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA--LIDDRRIC 284 (299)
Q Consensus 208 ~~~~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~--~i~g~~l~ 284 (299)
..+.++|||+|||+ .+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++. .+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45789999999999 9999999999999999999999865 479999999999999999998864 59999999
Q ss_pred EEecCCcccccc
Q 046966 285 VDFSQSVSKIWK 296 (299)
Q Consensus 285 v~~a~~~~~~~~ 296 (299)
|.+|++.++++.
T Consensus 86 V~~a~~~~~~~~ 97 (102)
T 1x4d_A 86 VHLSQKYKRIKS 97 (102)
T ss_dssp EEEECCCTTSSC
T ss_pred EEECCCCCCCCC
Confidence 999998766644
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=124.98 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCceEEEEcCCCCCCHHHHH---HhcccCCCeEEEEEeecCCCC---CeeeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLH---VIFSQFGTVVSAEILRDYRTG---ESLCYAFVEFEKREACEQAYFKMNNALIDDRR 282 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~---~~f~~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~ 282 (299)
...++|||+|||+++++++|+ ++|++||.|..+.++.++.++ +++|||||+|.+.++|++|++.||+..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred EEEEecCCcc
Q 046966 283 ICVDFSQSVS 292 (299)
Q Consensus 283 l~v~~a~~~~ 292 (299)
|+|.+++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999875
No 109
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=8.2e-18 Score=134.81 Aligned_cols=86 Identities=29% Similarity=0.351 Sum_probs=81.4
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 046966 289 QSVSKI 294 (299)
Q Consensus 289 ~~~~~~ 294 (299)
++....
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 987543
No 110
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=135.77 Aligned_cols=84 Identities=17% Similarity=0.352 Sum_probs=79.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEE--EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc----eeCCeE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS--AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA----LIDDRR 282 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~----~i~g~~ 282 (299)
.+.++|||+|||+++++++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..||+. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 56789999999999999999999999999976 99999988999999999999999 999999999999 999999
Q ss_pred EEEEecCCccc
Q 046966 283 ICVDFSQSVSK 293 (299)
Q Consensus 283 l~v~~a~~~~~ 293 (299)
|.|++++++++
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999998643
No 111
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=129.66 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=79.9
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999999988999999999999999999999987 9999999999999999
Q ss_pred Cccccc
Q 046966 290 SVSKIW 295 (299)
Q Consensus 290 ~~~~~~ 295 (299)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 886543
No 112
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=126.37 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=73.7
Q ss_pred CCCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--ceeCCeE
Q 046966 205 ADVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN--ALIDDRR 282 (299)
Q Consensus 205 ~~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~i~g~~ 282 (299)
....++.++|||+|||+++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.|++ ..+.|++
T Consensus 10 ~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp --CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345677899999999999999999999999999999999865 58999999999999999998864 7899999
Q ss_pred EEEEecCCcc
Q 046966 283 ICVDFSQSVS 292 (299)
Q Consensus 283 l~v~~a~~~~ 292 (299)
|+|.+|+++.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 9999999864
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=123.77 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=76.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999998654 56899999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9987644
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1.5e-17 Score=127.87 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=78.3
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+ .|||..++|+.|+|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999889999999999999999999999 8999999999999999997
Q ss_pred ccc
Q 046966 291 VSK 293 (299)
Q Consensus 291 ~~~ 293 (299)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 115
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=126.33 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
...++|||+|||+++++++|+++|++||.|.+|++++++. ++++|||||+|.+.++|++|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999976 9999999999999999999998 8999999999999997
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=123.79 Aligned_cols=81 Identities=26% Similarity=0.302 Sum_probs=74.8
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC-----eEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD-----RRI 283 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g-----~~l 283 (299)
...++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.||+..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 799999999999999999999999999 999
Q ss_pred EEEecCCcccccc
Q 046966 284 CVDFSQSVSKIWK 296 (299)
Q Consensus 284 ~v~~a~~~~~~~~ 296 (299)
+|++++++.+...
T Consensus 86 ~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 86 RVKVDGPRSPSYG 98 (108)
T ss_dssp EEEESSCCSCCCC
T ss_pred EEEeCCCCCCCCC
Confidence 9999998765433
No 117
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=121.05 Aligned_cols=85 Identities=28% Similarity=0.408 Sum_probs=77.7
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345689999999999999999999999884 67788888899999999999999999999999999999999999999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987654
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=128.20 Aligned_cols=82 Identities=26% Similarity=0.292 Sum_probs=78.4
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+ .||+..++|+.|.|.++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999999888999999999999999999999 9999999999999999987
Q ss_pred ccc
Q 046966 291 VSK 293 (299)
Q Consensus 291 ~~~ 293 (299)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 653
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=125.12 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCCceEEEEcCCCCC------CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCe-
Q 046966 209 PPDNVLFVCQLNPVT------EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDR- 281 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~------~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~- 281 (299)
...++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|++|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 779999999999999999988 36899999999999999999999999999999998
Q ss_pred EEEEEecCCcccc
Q 046966 282 RICVDFSQSVSKI 294 (299)
Q Consensus 282 ~l~v~~a~~~~~~ 294 (299)
.|+|.++....+.
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999999876553
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=129.49 Aligned_cols=84 Identities=15% Similarity=0.307 Sum_probs=75.5
Q ss_pred CCCCceEEEEcCCCCCCHHHHH----HhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLH----VIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
.++.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 699999999998774 367899999999999999999999999999999999
Q ss_pred EEEecCCcccc
Q 046966 284 CVDFSQSVSKI 294 (299)
Q Consensus 284 ~v~~a~~~~~~ 294 (299)
+|.+|+++...
T Consensus 103 ~V~~a~~~~~~ 113 (127)
T 2a3j_A 103 VITFSETPQSQ 113 (127)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEccCcchh
Confidence 99999987543
No 121
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.9e-18 Score=125.20 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=74.1
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.+ |.+|+..|||..++|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999889999999999999999 99999999999999999999999986
Q ss_pred ccc
Q 046966 292 SKI 294 (299)
Q Consensus 292 ~~~ 294 (299)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 122
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=3.5e-18 Score=119.42 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=72.0
Q ss_pred eEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ |++..++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999997 8999999999999875
No 123
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=124.97 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=77.6
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
....+.++|||+|||+++++++|+++|++||.|..++++.++ +.++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334568999999999999999999999999999999999884 458999999999999999999999999999999999
Q ss_pred EecCCc
Q 046966 286 DFSQSV 291 (299)
Q Consensus 286 ~~a~~~ 291 (299)
++++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999875
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.7e-17 Score=117.67 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=70.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
....-|||+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999865 5799999999999999999999999999999999999
Q ss_pred C
Q 046966 289 Q 289 (299)
Q Consensus 289 ~ 289 (299)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=2.2e-17 Score=126.95 Aligned_cols=84 Identities=27% Similarity=0.364 Sum_probs=79.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..++++.++ +|+++|||||+|.+.++|++|+..||+..++|+.|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98764
No 126
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=120.80 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=75.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+..||+..+.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4568999999999999999999999999976 56666 6899999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9987543
No 127
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=120.42 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=72.9
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh--CCceeCCeEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKM--NNALIDDRRI 283 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~~~~i~g~~l 283 (299)
...++.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33467899999999999999999999999999999988764 689999999999999999976 4678999999
Q ss_pred EEEecCCcc
Q 046966 284 CVDFSQSVS 292 (299)
Q Consensus 284 ~v~~a~~~~ 292 (299)
.|.+++++.
T Consensus 84 ~V~~a~~~~ 92 (101)
T 2cq1_A 84 YIQYSNHKE 92 (101)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCccc
Confidence 999999764
No 128
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=129.10 Aligned_cols=82 Identities=33% Similarity=0.466 Sum_probs=77.4
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
..++.++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.||+..++|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ec
Q 046966 287 FS 288 (299)
Q Consensus 287 ~a 288 (299)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 129
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8e-18 Score=131.22 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCC---eEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGT---VVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
....++|||+|||+++++++|+++|++||. |..|++++++. |+++|||||+|.+.++|++|++ ||+..++||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345789999999999999999999999999 88999999976 9999999999999999999998 999999999999
Q ss_pred EEecCCccccc
Q 046966 285 VDFSQSVSKIW 295 (299)
Q Consensus 285 v~~a~~~~~~~ 295 (299)
|.++.++...|
T Consensus 119 V~~a~~~e~~~ 129 (136)
T 2hgl_A 119 VFKSHRTEMDW 129 (136)
T ss_dssp EEECCHHHHHH
T ss_pred EEECChHHHHH
Confidence 99998765444
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=125.32 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=79.1
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCC-eEEEEEe-ecCCCCCeeeEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGT-VVSAEIL-RDYRTGESLCYAFVEFEKREACEQAYFKMN--NALIDDRRIC 284 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~-i~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~al~~l~--~~~i~g~~l~ 284 (299)
.+.++|||+|||+++++++|+++|++||. |..+.++ .++.++.++|||||+|.+.++|.+|++.|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEecCCccc
Q 046966 285 VDFSQSVSK 293 (299)
Q Consensus 285 v~~a~~~~~ 293 (299)
|.+++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998754
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=4.5e-18 Score=132.82 Aligned_cols=86 Identities=29% Similarity=0.351 Sum_probs=81.1
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 046966 289 QSVSKI 294 (299)
Q Consensus 289 ~~~~~~ 294 (299)
++..+.
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987544
No 132
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=121.51 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|||+|||+++++++|+++|++||.+ .++|++++ +++++|||||+|.+.++|++|+ .+|+..++||.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 4567899999999999999999999999954 99999996 8999999999999999999999 5799999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887653
No 133
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-18 Score=118.82 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999999 9999999999987
No 134
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=127.29 Aligned_cols=82 Identities=21% Similarity=0.151 Sum_probs=76.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCC---eEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGT---VVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...++|||+|||+++++++|+++|++||. |..++++.++. |+++|||||+|.+.++|++|++ ||+..++|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45789999999999999999999999999 89999999965 9999999999999999999998 9999999999999
Q ss_pred EecCCcc
Q 046966 286 DFSQSVS 292 (299)
Q Consensus 286 ~~a~~~~ 292 (299)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=125.97 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCe-EEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTV-VSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...+.++|||+|||+++++++|+++|++||.| ..++++.++ +++++|||||+|.+.++|++|++. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999997 999999999999999999999977 999999999999
Q ss_pred EecCCcc
Q 046966 286 DFSQSVS 292 (299)
Q Consensus 286 ~~a~~~~ 292 (299)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998754
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=124.60 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN--ALIDDRRIC 284 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~i~g~~l~ 284 (299)
..++.++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++.|++ ..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3467899999999999999999999999999999999875 68999999999999999998874 689999999
Q ss_pred EEecCCcc
Q 046966 285 VDFSQSVS 292 (299)
Q Consensus 285 v~~a~~~~ 292 (299)
|.+|+++.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99999865
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=2.9e-17 Score=123.24 Aligned_cols=80 Identities=26% Similarity=0.424 Sum_probs=73.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred cCCccccc
Q 046966 288 SQSVSKIW 295 (299)
Q Consensus 288 a~~~~~~~ 295 (299)
++++.+.|
T Consensus 100 a~~~~~r~ 107 (108)
T 2jvo_A 100 SKLPAKRY 107 (108)
T ss_dssp CSCCC---
T ss_pred ecCCCCCC
Confidence 99887654
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=120.38 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=76.8
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
..++.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.||+..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999998754 6899999999999999999999999999999999
Q ss_pred ecCCcccccc
Q 046966 287 FSQSVSKIWK 296 (299)
Q Consensus 287 ~a~~~~~~~~ 296 (299)
+++++...+.
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2cpj_A 85 FACHSASLTS 94 (99)
T ss_dssp ESSCCSCCCC
T ss_pred EcCCCCCCCC
Confidence 9998876554
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=121.01 Aligned_cols=83 Identities=25% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS-AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....++|||+|||+++++++|+++|++||.|.. +.++.+ .+|+++|||||+|.+.++|++|+.. ++..++||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999999999999999999999987 888888 7999999999999999999999987 9999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
.+.+..
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 988654
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-18 Score=127.42 Aligned_cols=87 Identities=23% Similarity=0.372 Sum_probs=74.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35679999999999999999999999999984332222223788999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987543
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=9.2e-17 Score=118.06 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.1
Q ss_pred CCCCCceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 207 VKPPDNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
..++.++|||+|||+ ++++++|+++|++||.|..+++. +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345789999999998 99999999999999999999883 689999999999999999999999999999999
Q ss_pred EecCCccc
Q 046966 286 DFSQSVSK 293 (299)
Q Consensus 286 ~~a~~~~~ 293 (299)
++++++.|
T Consensus 90 ~~a~~~~r 97 (97)
T 2xnq_A 90 EVSSSNAR 97 (97)
T ss_dssp EECCCCC-
T ss_pred EecCCCCC
Confidence 99988653
No 142
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=120.32 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=74.2
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...+..++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3345678999999999999999999999999996 666654 57899999999999999999999999999999999
Q ss_pred EecCCccc
Q 046966 286 DFSQSVSK 293 (299)
Q Consensus 286 ~~a~~~~~ 293 (299)
++++++++
T Consensus 89 ~~a~~~~~ 96 (97)
T 2e5j_A 89 ALARQQRD 96 (97)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99998753
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.5e-17 Score=122.13 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=76.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHH----HhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLH----VIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
.++.++|||+|||+++++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4568999999999999999999 9999999999998863 57788999999999999999999999999999999
Q ss_pred EEEecCCcccc
Q 046966 284 CVDFSQSVSKI 294 (299)
Q Consensus 284 ~v~~a~~~~~~ 294 (299)
+|.+++++...
T Consensus 82 ~v~~a~~~~~~ 92 (97)
T 1nu4_A 82 RIQYAKTDSDI 92 (97)
T ss_dssp EEEECSSCCTH
T ss_pred EEEEccCCCcc
Confidence 99999987654
No 144
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-17 Score=116.77 Aligned_cols=79 Identities=25% Similarity=0.426 Sum_probs=73.3
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567999999999999999999999999999999986 47999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987643
No 145
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=120.47 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=71.9
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc--eeCCeEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA--LIDDRRIC 284 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~--~i~g~~l~ 284 (299)
..++.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|++. .+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3467899999999999999999999999999999988753 689999999999999999988754 59999999
Q ss_pred EEecCCcc
Q 046966 285 VDFSQSVS 292 (299)
Q Consensus 285 v~~a~~~~ 292 (299)
|.+++++.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99999764
No 146
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.1e-17 Score=118.92 Aligned_cols=81 Identities=28% Similarity=0.470 Sum_probs=74.2
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC--CeEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID--DRRIC 284 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~--g~~l~ 284 (299)
..++.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.||+..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456799999999999999999999999999999988653 689999999999999999999999999 99999
Q ss_pred EEecCCccc
Q 046966 285 VDFSQSVSK 293 (299)
Q Consensus 285 v~~a~~~~~ 293 (299)
|++++++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999998753
No 147
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=3.6e-17 Score=122.98 Aligned_cols=81 Identities=14% Similarity=0.050 Sum_probs=72.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
.+..++|||+|||+++++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..++|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 899988753 2478999999999999999999999999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
+++...
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 998654
No 148
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=127.84 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=76.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++|+. ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3457899999999999999999999999999886666666799999999999999999999998 999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98754
No 149
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=121.05 Aligned_cols=81 Identities=17% Similarity=0.378 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
+..++|||+|||+.+++++|+.+|++||.|..++++.+ +|||||+|.+.++|.+|+..|++..++|+.|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred CCccccc
Q 046966 289 QSVSKIW 295 (299)
Q Consensus 289 ~~~~~~~ 295 (299)
+++...+
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 9876543
No 150
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=4e-18 Score=126.25 Aligned_cols=84 Identities=23% Similarity=0.280 Sum_probs=76.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|++ ||+..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999887 666776788999999999999999999998 999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 998754
No 151
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=116.21 Aligned_cols=81 Identities=28% Similarity=0.402 Sum_probs=73.4
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccC--CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQF--GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
....+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|++|+..||+..++|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344568999999999999999999999999 999988764 5699999999999999999999999999999
Q ss_pred EEEecCCcccc
Q 046966 284 CVDFSQSVSKI 294 (299)
Q Consensus 284 ~v~~a~~~~~~ 294 (299)
+|.+++++.+.
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999987653
No 152
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-18 Score=132.15 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=81.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEE--------EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVS--------AEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD 280 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g 280 (299)
.+.++|||+|||+.+++++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred eEEEEEecCCcccc
Q 046966 281 RRICVDFSQSVSKI 294 (299)
Q Consensus 281 ~~l~v~~a~~~~~~ 294 (299)
+.|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987644
No 153
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=115.13 Aligned_cols=79 Identities=25% Similarity=0.486 Sum_probs=73.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.||+..+.|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999999864 3999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
++++.+.
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9987654
No 154
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=3.1e-17 Score=139.38 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=77.5
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCC--CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFG--TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..++|||+||++++++++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|++||+.||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 155
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-17 Score=118.76 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=73.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..|++..++|+.|.|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999987665 25789999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++.+
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 998764
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.7e-17 Score=122.04 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=73.5
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||+++++++|+++|++| .|..+.|+.++ .|+++|||||+|.+.++|++|+ .||+..++||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 89999999996 4999999999999999999999 689999999999999887
Q ss_pred Cc
Q 046966 290 SV 291 (299)
Q Consensus 290 ~~ 291 (299)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 157
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=125.01 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCC---eEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGT---VVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
....++|||+|||+++++++|+++|+.||. |..++++.++. |+++|||||+|.+.++|++|+. ||+..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999998 89999999976 9999999999999999999998 999999999999
Q ss_pred EEecCCcc
Q 046966 285 VDFSQSVS 292 (299)
Q Consensus 285 v~~a~~~~ 292 (299)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99998764
No 158
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=113.49 Aligned_cols=76 Identities=28% Similarity=0.455 Sum_probs=70.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKM-NNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l-~~~~i~g~~l~v~ 286 (299)
.++.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.| ++..++|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999998864 689999999999999999988 9999999999999
Q ss_pred ecC
Q 046966 287 FSQ 289 (299)
Q Consensus 287 ~a~ 289 (299)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 159
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.9e-16 Score=117.58 Aligned_cols=78 Identities=29% Similarity=0.444 Sum_probs=72.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999886 35999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++.+
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 997654
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.9e-16 Score=133.19 Aligned_cols=85 Identities=31% Similarity=0.415 Sum_probs=78.8
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87653
No 161
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=8.2e-17 Score=122.00 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=75.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.++.++|||+|||+.+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999875 45589999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 99754
No 162
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=114.55 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=72.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45688999999999999999999999999999999864 3999999999999999999999999999999999
Q ss_pred cCCcccc
Q 046966 288 SQSVSKI 294 (299)
Q Consensus 288 a~~~~~~ 294 (299)
+++..+.
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 163
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=117.08 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=67.7
Q ss_pred CceEEEEcCCCCC------CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCe-EE
Q 046966 211 DNVLFVCQLNPVT------EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDR-RI 283 (299)
Q Consensus 211 ~~~v~v~nL~~~~------~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~-~l 283 (299)
+++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|++|++.|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 679999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EE
Q 046966 284 CV 285 (299)
Q Consensus 284 ~v 285 (299)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 164
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.3e-17 Score=121.85 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCCCceEEEEcCCCC-CCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 046966 208 KPPDNVLFVCQLNPV-TEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN--ALIDDRRIC 284 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~-~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~--~~i~g~~l~ 284 (299)
.++.++|||+|||++ +++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 99999999999999999999864 368999999999999999998864 569999999
Q ss_pred EEecCCcccc
Q 046966 285 VDFSQSVSKI 294 (299)
Q Consensus 285 v~~a~~~~~~ 294 (299)
|.+|+.+++.
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999987654
No 165
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.7e-17 Score=119.26 Aligned_cols=76 Identities=12% Similarity=0.290 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||+++++++|+++|++||.|.++++. +++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999887 356899999999999999999999999999999999998
Q ss_pred Cc
Q 046966 290 SV 291 (299)
Q Consensus 290 ~~ 291 (299)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 166
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=120.36 Aligned_cols=77 Identities=26% Similarity=0.411 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.||+..++|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 57999999999999999999999999999999876 6789999999999999999999999999999999999986
Q ss_pred cc
Q 046966 292 SK 293 (299)
Q Consensus 292 ~~ 293 (299)
.+
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-16 Score=120.58 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=72.8
Q ss_pred ceEEEEcC----CCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecC----HHH----HHHHHH--HhCCce
Q 046966 212 NVLFVCQL----NPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEK----REA----CEQAYF--KMNNAL 277 (299)
Q Consensus 212 ~~v~v~nL----~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~----~~~----a~~al~--~l~~~~ 277 (299)
..|||+|| |+.+++.+|+.+|++||+|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888888 789999
Q ss_pred eCCeEEEEEecCCc
Q 046966 278 IDDRRICVDFSQSV 291 (299)
Q Consensus 278 i~g~~l~v~~a~~~ 291 (299)
|+|+.|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997754
No 168
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=128.78 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEE--E---eecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAE--I---LRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRR 282 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~--~---~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~ 282 (299)
..+.++|||+|||+.+++++|+.+|++||.|..+. + +....+++++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45789999999999999999999999999987641 1 111247889999999999999999999999999999999
Q ss_pred EEEEecCCcc
Q 046966 283 ICVDFSQSVS 292 (299)
Q Consensus 283 l~v~~a~~~~ 292 (299)
|.|.+|++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 169
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=2e-16 Score=118.91 Aligned_cols=77 Identities=21% Similarity=0.446 Sum_probs=71.4
Q ss_pred CCCCceEEEEcCCCC-CCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPV-TEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~-~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....++|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|++.|++..++|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 56899999999999999999999999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
++++++
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998554
No 170
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=5.7e-17 Score=120.19 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=76.1
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..++++.++ +|+++|||||+|.+.++|++|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999997 99999999999999999999997 999999999999998
Q ss_pred CCccc
Q 046966 289 QSVSK 293 (299)
Q Consensus 289 ~~~~~ 293 (299)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 86643
No 171
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=1.8e-17 Score=115.68 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=71.4
Q ss_pred eEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 213 VLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 213 ~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
+|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++. ++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988999999999999999999999975 899999999999875
No 172
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.5e-16 Score=126.40 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|+..|||..++|++|+|++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+++++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99875
No 173
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1e-16 Score=117.51 Aligned_cols=79 Identities=23% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCCCceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
.++.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45689999999999 99999999999999999999883 6799999999999999999999999999999999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
+++++.+.
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 174
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=116.07 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=70.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCC-eEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGT-VVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN-ALIDDRRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~-~~i~g~~l~v~ 286 (299)
.+.++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||+ ..++|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 555554 2468999999999999999999999 99999999999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
+++++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99987543
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=7.1e-16 Score=123.80 Aligned_cols=83 Identities=27% Similarity=0.448 Sum_probs=79.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 764
No 176
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.4e-16 Score=122.97 Aligned_cols=82 Identities=27% Similarity=0.450 Sum_probs=78.4
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|++|+|.||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CC
Q 046966 289 QS 290 (299)
Q Consensus 289 ~~ 290 (299)
+.
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 177
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=114.25 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEE-EeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAE-ILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~-~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
....++|||+|||+++++++|+++|++||.|..++ ++.++.++. |||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999994 887765443 9999999999999999999999999999999
Q ss_pred ecCCc
Q 046966 287 FSQSV 291 (299)
Q Consensus 287 ~a~~~ 291 (299)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99986
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4.6e-16 Score=125.20 Aligned_cols=83 Identities=28% Similarity=0.496 Sum_probs=79.5
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 754
No 179
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=3e-16 Score=128.07 Aligned_cols=85 Identities=27% Similarity=0.362 Sum_probs=80.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
|.+...
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 987643
No 180
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=5.7e-16 Score=143.50 Aligned_cols=84 Identities=27% Similarity=0.465 Sum_probs=80.1
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
.++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 9753
No 181
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=111.83 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=72.2
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|| ++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|+..||+..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999884 467899999999999999999999999999999999
Q ss_pred ecCCcccc
Q 046966 287 FSQSVSKI 294 (299)
Q Consensus 287 ~a~~~~~~ 294 (299)
+++++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99987543
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=7.6e-16 Score=111.25 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=63.3
Q ss_pred CCCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce--eCCeEE
Q 046966 206 DVKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL--IDDRRI 283 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~--i~g~~l 283 (299)
...++.++|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+.++|++ |++.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34567899999999999999999999999999999999874 78999999999999884 45554 559999
Q ss_pred EEEecCCcc
Q 046966 284 CVDFSQSVS 292 (299)
Q Consensus 284 ~v~~a~~~~ 292 (299)
.|.++.++.
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999999875
No 183
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.3e-15 Score=125.94 Aligned_cols=86 Identities=23% Similarity=0.391 Sum_probs=81.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..++|+.|.|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 998754
No 184
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=111.50 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||+++++++|+++|++||.|..| +.++.+++ ||||+|.+.++|++|+. ||+..++|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 56656665 99999999999999999 99999999999999988
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 664
No 185
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=121.45 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCe----EEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTV----VSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
...++|||+|||+++++++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++|++. |+..++||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 347899999999999999999999999975 68999998 5899999999999999999999976 99999999999
Q ss_pred EEecCCcc
Q 046966 285 VDFSQSVS 292 (299)
Q Consensus 285 v~~a~~~~ 292 (299)
|..+.++.
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99887543
No 186
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=6.2e-16 Score=117.23 Aligned_cols=77 Identities=27% Similarity=0.331 Sum_probs=67.7
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeE-----EE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRR-----IC 284 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~-----l~ 284 (299)
..++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998 88
Q ss_pred EEecCCccc
Q 046966 285 VDFSQSVSK 293 (299)
Q Consensus 285 v~~a~~~~~ 293 (299)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 888876543
No 187
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=2.7e-16 Score=120.73 Aligned_cols=81 Identities=26% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeE--EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVV--SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~--~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
....++|||+|||+++++++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|++|++. ++..|+||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3457899999999999999999999999 566 899999975 99999999999999999999975 789999999999
Q ss_pred EecCCc
Q 046966 286 DFSQSV 291 (299)
Q Consensus 286 ~~a~~~ 291 (299)
..+.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-16 Score=118.54 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||+.+++++|+++|++||.|..+.++. ++|||||+|.+.++|++|++.|||..+.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998763 56899999999999999999999999999999999987
Q ss_pred Cc
Q 046966 290 SV 291 (299)
Q Consensus 290 ~~ 291 (299)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.8e-15 Score=122.22 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=76.9
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|++|.|++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 37899999999999999999999999999999999998899999999999999999999999999999999999999973
No 190
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=1e-15 Score=110.24 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.|||..++|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 578999999999999999999999999999999999997
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 191
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=2.1e-15 Score=126.46 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=80.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+.+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred Cccc
Q 046966 290 SVSK 293 (299)
Q Consensus 290 ~~~~ 293 (299)
++..
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8753
No 192
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=109.72 Aligned_cols=76 Identities=26% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCCce-EEEEcCCCCCCHHH----HHHhcccC-CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 046966 209 PPDNV-LFVCQLNPVTEDED----LHVIFSQF-GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRR 282 (299)
Q Consensus 209 ~~~~~-v~v~nL~~~~~e~~----L~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~ 282 (299)
+|..+ |||+|||+.+++++ |+++|++| |.|.++ ++ |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999987 55899999 599887 34 99999999999999999999999999999
Q ss_pred EEEEecCCcccc
Q 046966 283 ICVDFSQSVSKI 294 (299)
Q Consensus 283 l~v~~a~~~~~~ 294 (299)
|+|++|+.++..
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999987654
No 193
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.7e-15 Score=113.90 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCCce--EEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeE-EEEEecCHHHHHHHHHHhCCceeCC--eEE
Q 046966 209 PPDNV--LFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCY-AFVEFEKREACEQAYFKMNNALIDD--RRI 283 (299)
Q Consensus 209 ~~~~~--v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~~~~i~g--~~l 283 (299)
++.+. |||+||++.+++++|+++|++||.|.++.+... .|| |||+|.+.++|.+|++.|||..|.| +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 44444 679999999999999999999999999998652 276 9999999999999999999999987 699
Q ss_pred EEEecCCcc
Q 046966 284 CVDFSQSVS 292 (299)
Q Consensus 284 ~v~~a~~~~ 292 (299)
+|.+|+++.
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999999874
No 194
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.7e-15 Score=115.19 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=69.5
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCY-AFVEFEKREACEQAYFKMNNALIDD--RRICVDFS 288 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~~~~i~g--~~l~v~~a 288 (299)
-.|||+||++.+++++|+++|++||.|.++.+..+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999988764 2577 9999999999999999999999988 99999999
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
++.+
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 9864
No 195
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=2.3e-15 Score=124.27 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=76.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3468999999999999999999999999999999999988999999999999999999999976 899999999999999
Q ss_pred CCcccc
Q 046966 289 QSVSKI 294 (299)
Q Consensus 289 ~~~~~~ 294 (299)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 987654
No 196
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.8e-15 Score=127.13 Aligned_cols=80 Identities=34% Similarity=0.513 Sum_probs=75.3
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
..+|||+|||+.+++++|+++|++||.|..++++.+. +.++|||||+|.+.++|.+|++.|||..|+|++|.|.++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999999984 45899999999999999999999999999999999999998
Q ss_pred cc
Q 046966 291 VS 292 (299)
Q Consensus 291 ~~ 292 (299)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 64
No 197
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=2.2e-15 Score=124.43 Aligned_cols=84 Identities=26% Similarity=0.313 Sum_probs=77.6
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34578999999999999999999999999999999999998999999999999999999999976 99999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 88653
No 198
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.1e-16 Score=125.22 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=74.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
....++|||+|||+++++++|+++|++|| +..|+|+.++. ++++|||||+|.+.++|++|+ .+|+..++||.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999 66999999964 999999999999999999999 7899999999999999
Q ss_pred cCCcc
Q 046966 288 SQSVS 292 (299)
Q Consensus 288 a~~~~ 292 (299)
+.+..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88754
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=8.1e-16 Score=123.73 Aligned_cols=80 Identities=24% Similarity=0.452 Sum_probs=76.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..++|++|.|.+|.|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998899999999999999999999997 899999999999999998
Q ss_pred c
Q 046966 291 V 291 (299)
Q Consensus 291 ~ 291 (299)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 200
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=114.76 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCCceEEE--EcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee-----CCe
Q 046966 209 PPDNVLFV--CQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI-----DDR 281 (299)
Q Consensus 209 ~~~~~v~v--~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i-----~g~ 281 (299)
.+..+||| +||++++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 46788999 77999999999999999999999987753 268999999999999999999999998 689
Q ss_pred EEEEEecCCc
Q 046966 282 RICVDFSQSV 291 (299)
Q Consensus 282 ~l~v~~a~~~ 291 (299)
+|.|.|++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999854
No 201
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=2.9e-15 Score=119.35 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=70.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD--RRICVDFS 288 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g--~~l~v~~a 288 (299)
-.+|||+||++.+++++|+++|++||.|.++.+... .++|||||+|.+.++|++|++.|||..|.| +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 346899999999999999999999999999998654 257899999999999999999999999965 99999999
Q ss_pred CCcc
Q 046966 289 QSVS 292 (299)
Q Consensus 289 ~~~~ 292 (299)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9864
No 202
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=8.5e-15 Score=117.74 Aligned_cols=80 Identities=33% Similarity=0.559 Sum_probs=76.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD--RRICVD 286 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g--~~l~v~ 286 (299)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.| ++|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999999987 999999
Q ss_pred ec
Q 046966 287 FS 288 (299)
Q Consensus 287 ~a 288 (299)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 203
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=8.5e-15 Score=108.95 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCC-----CCCHHHHHHhcccCCCeEEEEEeecCCC-CCeeeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 046966 209 PPDNVLFVCQLNP-----VTEDEDLHVIFSQFGTVVSAEILRDYRT-GESLCYAFVEFEKREACEQAYFKMNNALIDDRR 282 (299)
Q Consensus 209 ~~~~~v~v~nL~~-----~~~e~~L~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~ 282 (299)
.++++|+|.||.. +-.+++|++.|++||.|.++.++.++.+ +.++|||||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4688999999963 2368999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEecCCc
Q 046966 283 ICVDFSQSV 291 (299)
Q Consensus 283 l~v~~a~~~ 291 (299)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999863
No 204
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.2e-15 Score=118.14 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=74.7
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCc
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSV 291 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~ 291 (299)
++|||+|||+++++++|+++|++||.|.+++++.++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999985 5789999999999999999999999999999999999999765
Q ss_pred c
Q 046966 292 S 292 (299)
Q Consensus 292 ~ 292 (299)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=113.67 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCC---CCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRT---GESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888887766 7999999999999999999999884 366777666
Q ss_pred EecC
Q 046966 286 DFSQ 289 (299)
Q Consensus 286 ~~a~ 289 (299)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6554
No 206
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=4.8e-15 Score=123.82 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=72.3
Q ss_pred CCCceEEEEcCC-CCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 209 PPDNVLFVCQLN-PVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~-~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
+++++|||+||| +.+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 457899999999 89999999999999999999999875 368999999999999999999999999999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8743
No 207
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=108.35 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=67.5
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFS 288 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a 288 (299)
.+.++|||+|||+++++++|+++|++||.|..++++.+ ++|||||+|.+.++|+++.. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35799999999999999999999999999999998764 68999999999999986532 134568999999999
Q ss_pred CCcccc
Q 046966 289 QSVSKI 294 (299)
Q Consensus 289 ~~~~~~ 294 (299)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987643
No 208
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=1.4e-14 Score=116.20 Aligned_cols=79 Identities=32% Similarity=0.487 Sum_probs=74.4
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeE--EEEEe
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRR--ICVDF 287 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~--l~v~~ 287 (299)
+.++|||+|||+.+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 3678999999999999999999999999999999999889999999999999999999999999999999975 88887
Q ss_pred c
Q 046966 288 S 288 (299)
Q Consensus 288 a 288 (299)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=6.8e-15 Score=112.46 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..||+..++|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999885 4678999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
++++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 998753
No 210
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=8.3e-15 Score=122.76 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=75.7
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..++|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
+..
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 211
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=7.9e-15 Score=105.16 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=66.3
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccC----C-------CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCce
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQF----G-------TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNAL 277 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~ 277 (299)
.+.++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999988654 689999999999999999 999999
Q ss_pred eCCeEEEEEe
Q 046966 278 IDDRRICVDF 287 (299)
Q Consensus 278 i~g~~l~v~~ 287 (299)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 212
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.4e-14 Score=117.24 Aligned_cols=79 Identities=30% Similarity=0.468 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID---DRRICVD 286 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~---g~~l~v~ 286 (299)
+.++|||+|||+.+++++|+++|++||.|.++.++.++ +|.++|||||+|.+.++|.+|++.|||..+. +++|.|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46789999999999999999999999999999999985 6999999999999999999999999998776 4999999
Q ss_pred ecC
Q 046966 287 FSQ 289 (299)
Q Consensus 287 ~a~ 289 (299)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 213
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.6e-14 Score=116.78 Aligned_cols=83 Identities=27% Similarity=0.342 Sum_probs=75.8
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCC--CeeeEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTG--ESLCYAFVEFEKREACEQAYFKMNNALID---DRRIC 284 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~~~~i~---g~~l~ 284 (299)
..++|||+|||+++++++|+++|++||.|.+++++.++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999999998876 67888
Q ss_pred EEecCCcc
Q 046966 285 VDFSQSVS 292 (299)
Q Consensus 285 v~~a~~~~ 292 (299)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877553
No 214
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.8e-14 Score=116.82 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|.|++++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999987765 3688999999999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
+++
T Consensus 173 ~k~ 175 (175)
T 1fje_B 173 EKG 175 (175)
T ss_dssp SCC
T ss_pred CCC
Confidence 863
No 215
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=3.8e-14 Score=117.20 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=72.7
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.++|||+|||+++++++|+++|++||.|..++++++. ++.++|||||+|.+.++|++|+..+ +..++|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 5799999999999999999999999999999999985 6999999999999999999999765 4599999999999775
Q ss_pred c
Q 046966 291 V 291 (299)
Q Consensus 291 ~ 291 (299)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 216
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=9.7e-15 Score=117.34 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=75.4
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999974 678999999999988
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
++.
T Consensus 80 ~~~ 82 (167)
T 2cjk_A 80 PRD 82 (167)
T ss_dssp CHH
T ss_pred chh
Confidence 653
No 217
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=4.7e-14 Score=123.30 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=75.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHH----HhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLH----VIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
..+.++|||+|||+++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999976 8999999999998875 68899999999999999999999999999999999
Q ss_pred EEEecCCcc
Q 046966 284 CVDFSQSVS 292 (299)
Q Consensus 284 ~v~~a~~~~ 292 (299)
+|.++++..
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999998654
No 218
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=4e-14 Score=124.39 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=76.5
Q ss_pred CCCCceEEEEcCCCC-CCHHHHHHhcccCCCeEEEEEeecCC-CCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 046966 208 KPPDNVLFVCQLNPV-TEDEDLHVIFSQFGTVVSAEILRDYR-TGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICV 285 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~-~~e~~L~~~f~~~G~i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v 285 (299)
..+.++|||+|||+. +++++|+++|++||.|..++++.+.. ||.++|||||+|.+.++|.+|+ .|||..++|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999865 5999999999999999999999 99999999999999
Q ss_pred EecCCc
Q 046966 286 DFSQSV 291 (299)
Q Consensus 286 ~~a~~~ 291 (299)
.+++++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999986
No 219
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.51 E-value=9.8e-14 Score=121.39 Aligned_cols=83 Identities=22% Similarity=0.405 Sum_probs=79.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Ccc
Q 046966 290 SVS 292 (299)
Q Consensus 290 ~~~ 292 (299)
+..
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 764
No 220
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=2.7e-14 Score=121.08 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCCceEEEEcCCCCC---------CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee-
Q 046966 209 PPDNVLFVCQLNPVT---------EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI- 278 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~---------~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i- 278 (299)
...++|||+||+..+ ++++|+.+|++||.|.+|+++. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 457899999999998 6999999999999999999975 468999999999999999999999999
Q ss_pred -----------CCeEEEEEecCCccc
Q 046966 279 -----------DDRRICVDFSQSVSK 293 (299)
Q Consensus 279 -----------~g~~l~v~~a~~~~~ 293 (299)
.|+.|.|+||++...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999997643
No 221
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=103.68 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCCCCceEEEEcCCCCCC-----------HHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 046966 207 VKPPDNVLFVCQLNPVTE-----------DEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN 275 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~-----------e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~ 275 (299)
.+.+.++|+|.||..... +++|+++|++||.|.++.+ .++ .++|||||+|.+.++|++|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345689999999944332 5799999999999999965 553 3789999999999999999999999
Q ss_pred ceeCCeEEEEEecCCcccc
Q 046966 276 ALIDDRRICVDFSQSVSKI 294 (299)
Q Consensus 276 ~~i~g~~l~v~~a~~~~~~ 294 (299)
..++|+.|.|.++.++.+.
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999987544
No 222
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.50 E-value=9e-14 Score=121.61 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCCCC-CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 209 PPDNVLFVCQLNPVT-EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~-~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
.+.++|||+|||+.+ ++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 046966 288 SQSVSK 293 (299)
Q Consensus 288 a~~~~~ 293 (299)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 998753
No 223
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=5.6e-14 Score=119.29 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=74.8
Q ss_pred CCCCCCceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 206 DVKPPDNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 206 ~~~~~~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
...++.++|||+|||+ .+++++|+++|++||.|.+++++.++ +|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3346789999999999 99999999999999999999998874 78999999999999999999999999999999
Q ss_pred EEecCCc
Q 046966 285 VDFSQSV 291 (299)
Q Consensus 285 v~~a~~~ 291 (299)
|.++++.
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999865
No 224
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=2.3e-14 Score=116.20 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=73.2
Q ss_pred CCCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 046966 207 VKPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVD 286 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~ 286 (299)
...+.++|||+|||+++++++|+++|.+||.+.. .++.+..++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3456899999999999999999999999987765 33444467889999999999999999999 599999999999999
Q ss_pred ecCCcc
Q 046966 287 FSQSVS 292 (299)
Q Consensus 287 ~a~~~~ 292 (299)
++.++.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998653
No 225
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=3.3e-13 Score=117.86 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=71.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICVD 286 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v~ 286 (299)
.++.++|||+|||..+++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4567899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred ecC
Q 046966 287 FSQ 289 (299)
Q Consensus 287 ~a~ 289 (299)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 226
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=2.5e-13 Score=117.52 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=75.0
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356789999999999999999999999999999988543 68999999999999999999999999999999999
Q ss_pred cCCcccccc
Q 046966 288 SQSVSKIWK 296 (299)
Q Consensus 288 a~~~~~~~~ 296 (299)
+.+...++.
T Consensus 93 a~~~~~l~v 101 (261)
T 3sde_A 93 ATHGAALTV 101 (261)
T ss_dssp CCCSSEEEE
T ss_pred cccCCcccc
Confidence 988665543
No 227
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2.7e-13 Score=100.76 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCCceEEEEcC--CCCCC--------HHHHHHhcccCCCeEEEEEeecCCC--CCeeeEEEEEecCHHHHHHHHHHhCCc
Q 046966 209 PPDNVLFVCQL--NPVTE--------DEDLHVIFSQFGTVVSAEILRDYRT--GESLCYAFVEFEKREACEQAYFKMNNA 276 (299)
Q Consensus 209 ~~~~~v~v~nL--~~~~~--------e~~L~~~f~~~G~i~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~~~ 276 (299)
.|++.|.+.|+ |.... +++|++.|++||.|.++.|++++.+ +.++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33333 3689999999999999999988654 467899999999999999999999999
Q ss_pred eeCCeEEEEEecCCc
Q 046966 277 LIDDRRICVDFSQSV 291 (299)
Q Consensus 277 ~i~g~~l~v~~a~~~ 291 (299)
.++||.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998754
No 228
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=1.5e-13 Score=114.76 Aligned_cols=79 Identities=14% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCe--EEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCe----
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTV--VSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDR---- 281 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i--~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~---- 281 (299)
.++.++|||+|||+.+++++|+++|++||.| .+++++.++ +..+|||||+|.+.++|.+|+..|||+.+.|+
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3567899999999999999999999999999 899988774 55679999999999999999999999999887
Q ss_pred EEEEEec
Q 046966 282 RICVDFS 288 (299)
Q Consensus 282 ~l~v~~a 288 (299)
++.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5776664
No 229
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.44 E-value=2.9e-13 Score=118.88 Aligned_cols=81 Identities=12% Similarity=0.249 Sum_probs=71.4
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDF 287 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~ 287 (299)
..+.++|||+|||+++++++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|.+|++ +++..++|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 346899999999999999999999999999999999998533 57999999999999999994 899999999999999
Q ss_pred cCCc
Q 046966 288 SQSV 291 (299)
Q Consensus 288 a~~~ 291 (299)
+.+.
T Consensus 115 ~~~~ 118 (292)
T 2ghp_A 115 LTEC 118 (292)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 230
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=6.4e-14 Score=104.03 Aligned_cols=72 Identities=18% Similarity=0.374 Sum_probs=63.7
Q ss_pred EEcCCCCCCHHHHHHhc------------ccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 216 VCQLNPVTEDEDLHVIF------------SQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 216 v~nL~~~~~e~~L~~~f------------~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
+.+|++.+++++|++.| ++||.|.++.+++++ +++++|||||+|.+.++|.+|+..|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777776666 999999999999885 58899999999999999999999999999999999
Q ss_pred EEEec
Q 046966 284 CVDFS 288 (299)
Q Consensus 284 ~v~~a 288 (299)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 231
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=4.4e-13 Score=113.76 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=72.7
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICV 285 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v 285 (299)
.++.++|||+|||+.+++++|+++|++|| .|..++++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|+|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45689999999999999999999999999 9999998653 3689999999999999999999999999 999999
Q ss_pred EecCCc
Q 046966 286 DFSQSV 291 (299)
Q Consensus 286 ~~a~~~ 291 (299)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999874
No 232
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=3e-13 Score=111.92 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=72.9
Q ss_pred CCCCceEEEEcCCCCCCHHHHHHhcccCC-CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q 046966 208 KPPDNVLFVCQLNPVTEDEDLHVIFSQFG-TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID-DRRICV 285 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~~~e~~L~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~-g~~l~v 285 (299)
.++.++|||+|||..+++++|+++|++|| .|..++++.+ .+|+|||+|.+.++|.+|+..|||..++ |+.|+|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 9999998654 2689999999999999999999999999 999999
Q ss_pred EecCCc
Q 046966 286 DFSQSV 291 (299)
Q Consensus 286 ~~a~~~ 291 (299)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999874
No 233
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=1.4e-13 Score=113.88 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=71.6
Q ss_pred CceEEEEcCCC-CCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 211 DNVLFVCQLNP-VTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 211 ~~~v~v~nL~~-~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
+++|||+|||+ .+++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|+..|||..+.|+.|.|.+++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998773 6899999999999999999999999999999999998
Q ss_pred Cc
Q 046966 290 SV 291 (299)
Q Consensus 290 ~~ 291 (299)
+.
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 234
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=7.2e-13 Score=100.44 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=71.5
Q ss_pred CCceEEEEcCCC--CC---CHHHHHHhcccCCCeEEEEEeecCC----CCCeeeEEEEEecCHHHHHHHHHHhCCceeCC
Q 046966 210 PDNVLFVCQLNP--VT---EDEDLHVIFSQFGTVVSAEILRDYR----TGESLCYAFVEFEKREACEQAYFKMNNALIDD 280 (299)
Q Consensus 210 ~~~~v~v~nL~~--~~---~e~~L~~~f~~~G~i~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g 280 (299)
++++|++.|+-. ++ -+++|++.|++||.|.++.|+.++. ++.++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 688999999832 22 2589999999999999999998854 46789999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 046966 281 RRICVDFSQS 290 (299)
Q Consensus 281 ~~l~v~~a~~ 290 (299)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999875
No 235
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=1.3e-12 Score=113.09 Aligned_cols=82 Identities=29% Similarity=0.400 Sum_probs=74.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC-CceeC---CeEEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN-NALID---DRRICV 285 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~-~~~i~---g~~l~v 285 (299)
+..+|||+|||+.+++++|+++|++||.|..+.++.+ .+|+++|||||+|.+.++|.+|+..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3679999999999999999999999999999999999 689999999999999999999999995 44554 999999
Q ss_pred EecCCcc
Q 046966 286 DFSQSVS 292 (299)
Q Consensus 286 ~~a~~~~ 292 (299)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9988653
No 236
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.32 E-value=2.6e-12 Score=105.93 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=66.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccC----C-------CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQF----G-------TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI 278 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i 278 (299)
..++|||+|||+++++++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5555554 445799999999999999999 8999999
Q ss_pred CCeEEEEEecCCc
Q 046966 279 DDRRICVDFSQSV 291 (299)
Q Consensus 279 ~g~~l~v~~a~~~ 291 (299)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 237
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.32 E-value=3.1e-12 Score=103.10 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=67.2
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccC----C-------CeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQF----G-------TVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI 278 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i 278 (299)
+.++|||+|||+++++++|+++|++| | .|..+.+. +++|||||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66776654 34789999999999999999 8999999
Q ss_pred CCeEEEEEecCCc
Q 046966 279 DDRRICVDFSQSV 291 (299)
Q Consensus 279 ~g~~l~v~~a~~~ 291 (299)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998764
No 238
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-11 Score=89.85 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=58.3
Q ss_pred CCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCccc
Q 046966 221 PVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQSVSK 293 (299)
Q Consensus 221 ~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~~~~ 293 (299)
..+++++|+++|++||.|..+.++ ++++|||||+|.+.++|++|++.+++ +.|++|+|.|++++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999987 36789999999999999999987554 6799999999987653
No 239
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1.1e-11 Score=110.48 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=66.1
Q ss_pred CCCCceEEEEc--CCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC---Ce-
Q 046966 208 KPPDNVLFVCQ--LNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID---DR- 281 (299)
Q Consensus 208 ~~~~~~v~v~n--L~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~---g~- 281 (299)
.++..+|||+| |++.+++++|+++|++||.|.++.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46788999999 688999999999999999999887643 4699999999999999999999999873 45
Q ss_pred -EEEEEecC
Q 046966 282 -RICVDFSQ 289 (299)
Q Consensus 282 -~l~v~~a~ 289 (299)
.|.+.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57788875
No 240
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=4.6e-11 Score=89.87 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=65.9
Q ss_pred CCCceEEEEcCCCCC----------CHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee
Q 046966 209 PPDNVLFVCQLNPVT----------EDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI 278 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~----------~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i 278 (299)
.+++.|.+.|+=..- -+++|++.|++||.|.++.+.++. ++|++||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457788899873211 135789999999999999987652 489999999999999999999999999
Q ss_pred CCeEEEEEecCC
Q 046966 279 DDRRICVDFSQS 290 (299)
Q Consensus 279 ~g~~l~v~~a~~ 290 (299)
+||.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 241
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=82.76 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCCCceEEEEcCCC----CCCH----HHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 208 KPPDNVLFVCQLNP----VTED----EDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 208 ~~~~~~v~v~nL~~----~~~e----~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
.||..+|+|...+. ++.. .+|...|.+||.|..++++.++ +||+|.+.++|.+|++ |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 47889999988772 3434 6789999999999999998873 8999999999999997 9999999
Q ss_pred CeEEEEEecCC
Q 046966 280 DRRICVDFSQS 290 (299)
Q Consensus 280 g~~l~v~~a~~ 290 (299)
||.|+|+++++
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999886
No 242
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.1e-09 Score=82.63 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=68.9
Q ss_pred CCCCCceEEEEcCCCC-CCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecC-HHHHHHHHHHhC--CceeCCeE
Q 046966 207 VKPPDNVLFVCQLNPV-TEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEK-REACEQAYFKMN--NALIDDRR 282 (299)
Q Consensus 207 ~~~~~~~v~v~nL~~~-~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~-~~~a~~al~~l~--~~~i~g~~ 282 (299)
.-++++.|||+||++. +++++|+++|++||.|..|.+..+.. .|||.|.+ ..+|..|++.|+ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467999999999999 99999999999999999999987743 49999999 899999999995 67889999
Q ss_pred EEEEecCC
Q 046966 283 ICVDFSQS 290 (299)
Q Consensus 283 l~v~~a~~ 290 (299)
+.++....
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 98887654
No 243
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=6.7e-10 Score=79.08 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCCceEEEEcCCCC-----CCH----HHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCcee
Q 046966 208 KPPDNVLFVCQLNPV-----TED----EDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALI 278 (299)
Q Consensus 208 ~~~~~~v~v~nL~~~-----~~e----~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i 278 (299)
.||..+|+|..++.. +.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 578999999988742 333 5688999999999999998883 9999999999999998 999999
Q ss_pred CCeEEEEEecCC
Q 046966 279 DDRRICVDFSQS 290 (299)
Q Consensus 279 ~g~~l~v~~a~~ 290 (299)
+||.|+|++..|
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998654
No 244
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=1e-08 Score=86.21 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=60.2
Q ss_pred CHHHHHHhcccCCCeEEEEEeecC----CCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q 046966 224 EDEDLHVIFSQFGTVVSAEILRDY----RTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQS 290 (299)
Q Consensus 224 ~e~~L~~~f~~~G~i~~~~~~~~~----~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~~ 290 (299)
.+++|++.|++||.|.++.++.+. .++.++|++||+|.+.++|.+|++.|||..++||.|.+.++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346899999999999999998553 3458999999999999999999999999999999999999864
No 245
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=7.1e-06 Score=59.57 Aligned_cols=75 Identities=8% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCCceEEEEcCCCCCCHHHHHHhcccC-----CCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 046966 209 PPDNVLFVCQLNPVTEDEDLHVIFSQF-----GTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRI 283 (299)
Q Consensus 209 ~~~~~v~v~nL~~~~~e~~L~~~f~~~-----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l 283 (299)
...+++-+-|||..++...++.+..++ |.+.++.+..|- +-|+|+|.+...|-+|.-.|+|.+|.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347889999999999999999999999 999999887763 479999999999999998999999999999
Q ss_pred EEEecC
Q 046966 284 CVDFSQ 289 (299)
Q Consensus 284 ~v~~a~ 289 (299)
++.-..
T Consensus 93 r~gTv~ 98 (117)
T 2l9w_A 93 RSGTIN 98 (117)
T ss_dssp EEECHH
T ss_pred EecCHH
Confidence 987543
No 246
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.00082 Score=48.50 Aligned_cols=76 Identities=11% Similarity=0.280 Sum_probs=61.7
Q ss_pred CCceEEEEcCCCCC-CH----HHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 210 PDNVLFVCQLNPVT-ED----EDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 210 ~~~~v~v~nL~~~~-~e----~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
-+.+|+|.||+.++ .. +.++++|..|+.+......+.- . -..|.|.+.++|.+|-..||+..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--R----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--K----RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--T----EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--e----EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 36789999998865 22 4678999999988776655431 1 246899999999999999999999999999
Q ss_pred EEecCCc
Q 046966 285 VDFSQSV 291 (299)
Q Consensus 285 v~~a~~~ 291 (299)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998854
No 247
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.0051 Score=44.19 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=58.5
Q ss_pred CCceEEEEcCCCCCCHHHHHHhccc-----CCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQ-----FGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRIC 284 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~-----~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~ 284 (299)
...+|.|.|||+.+.++.|.-+|++ -|.|..+.... +-|+|+|.+...|++.++. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4689999999999999999999976 25677776532 4789999999999999853 47889999998
Q ss_pred EEecCCc
Q 046966 285 VDFSQSV 291 (299)
Q Consensus 285 v~~a~~~ 291 (299)
|.-.-++
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 8755443
No 248
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.91 E-value=0.005 Score=43.73 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN 274 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 274 (299)
..+.+++ ++|..+...||..+|+.||. ..|+++-|. .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3556666 99999999999999999995 457787773 79999999999999998763
No 249
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.0017 Score=46.27 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=47.3
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMN 274 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 274 (299)
.+.+++ ++|..+...||..+|+.|| -..|+++-|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456777 9999999999999999999 4567887773 79999999999999998764
No 250
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.75 E-value=0.013 Score=41.40 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCC--eeeEEEEEecCHHHHHHHHHHhCCceeC
Q 046966 212 NVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGE--SLCYAFVEFEKREACEQAYFKMNNALID 279 (299)
Q Consensus 212 ~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~al~~l~~~~i~ 279 (299)
++|.|.+||+.++++++.+.++....+..........+.+ .-+-|||.|.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4788999999999999999999888766555444332222 2356899999999999999999999865
No 251
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.77 E-value=0.039 Score=40.80 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEEec
Q 046966 210 PDNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDD-RRICVDFS 288 (299)
Q Consensus 210 ~~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g-~~l~v~~a 288 (299)
..+-|.|.+.|+.. -..+...|++||.|.+..... ...+-.|.|.++.+|++||. .||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 46778888998875 466778899999999876521 22478899999999999995 49999984 66667664
Q ss_pred C
Q 046966 289 Q 289 (299)
Q Consensus 289 ~ 289 (299)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 252
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=95.33 E-value=0.14 Score=40.28 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=60.4
Q ss_pred eEEEEecCCCChHHHHHHHHhhh--C----CCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCcccccccccCCCCCC
Q 046966 11 DIVIDLFVDKCPRTTNNFLQHCK--N----KYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEIRADLKHDK 84 (299)
Q Consensus 11 ~i~ieL~~~~~P~~~~nF~~l~~--~----~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 84 (299)
.++.+|..+.||+||+.|+++.= + ..|-|-.++-..|.|-. .....|+.+..+ .
T Consensus 34 ~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f~~------------------~~~g~EN~T~~P--~ 93 (188)
T 3kop_A 34 TCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAP------------------KEPGAENTTVTP--I 93 (188)
T ss_dssp EEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECCSS------------------SCCCSCSEESSC--C
T ss_pred EEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcccc------------------cCCCcCCCCCCC--C
Confidence 47899999999999999999761 1 12444444433333110 113445344333 4
Q ss_pred ceEEEEEcC-----C-------C------CCCcceEEEEecCCCCCCCCC-----ceEEEEeecCHHHHHHHHh
Q 046966 85 VGTVGMASA-----G-------R------DLNASQFYITLRDNLHYLDEK-----HTIFGEVAEGLETLTRINQ 135 (299)
Q Consensus 85 ~G~l~~~~~-----~-------~------~~~~s~FfI~~~~~~~~ld~~-----~~vfG~V~~G~~vl~~i~~ 135 (299)
+|-|++... | + .....++.|-.+.+.-.+.++ -.+|++|++|+|-+.++.+
T Consensus 94 pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~TIveGle~la~~c~ 167 (188)
T 3kop_A 94 PGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLDEMAAACQ 167 (188)
T ss_dssp TTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEEEEESHHHHHHHHH
T ss_pred CCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEEEecCHHHHHHHHH
Confidence 677777411 1 0 111246777777532212222 2699999999998877754
No 253
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.23 E-value=0.023 Score=44.10 Aligned_cols=35 Identities=9% Similarity=0.012 Sum_probs=28.8
Q ss_pred EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCc
Q 046966 240 SAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNA 276 (299)
Q Consensus 240 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~ 276 (299)
.++++.+. .+++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35666763 468999999999999999999888754
No 254
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=94.77 E-value=0.071 Score=41.41 Aligned_cols=102 Identities=14% Similarity=0.258 Sum_probs=63.4
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhh--hC--CCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCccccc-c
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHC--KN--KYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVD-E 75 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~--~~--~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~-e 75 (299)
|.|.|.-.-..++++|+.+.||+||+.|+++. +. ..|.+-.++.+ |-. +.. |
T Consensus 30 ~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~~l-p~~----------------------l~~~e 86 (153)
T 2nnz_A 30 MRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYFTT-QVA----------------------VEKEE 86 (153)
T ss_dssp CCEEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEECC-SCC----------------------CCCSS
T ss_pred eEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEEEC-CCC----------------------CCCCC
Confidence 56777777788999999999999999999976 11 12322222211 100 011 2
Q ss_pred cccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCC------CCceEEEEeecCHHHHHHH
Q 046966 76 IRADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLD------EKHTIFGEVAEGLETLTRI 133 (299)
Q Consensus 76 ~~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld------~~~~vfG~V~~G~~vl~~i 133 (299)
+.. .....|-|++...+ ..+.|-.++. +... ..-.+||+|++|++.|..+
T Consensus 87 -n~~-~~~~~GDI~Yy~pg-----~~LaIFYg~~-p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 87 -NSK-DVVELGDVAYWIPG-----KAICLFFGKT-PISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp -CCB-CCCCTTEEEEETTT-----TEEEEESSCC-TTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred -CCc-ccCCCCeEEEeCCC-----CEEEEEECCc-cccccccccccccEEEEEEccCHHHHhhC
Confidence 111 12357888886543 2488888763 2221 2357999999998888776
No 255
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.32 E-value=0.027 Score=43.38 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=38.2
Q ss_pred CCCeeeEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEecCCc
Q 046966 249 TGESLCYAFVEFEKREACEQAYFKM-NNALIDDRRICVDFSQSV 291 (299)
Q Consensus 249 ~g~~~g~afv~f~~~~~a~~al~~l-~~~~i~g~~l~v~~a~~~ 291 (299)
....+|+++++|.+.++|++|++.| ||..++| .+.++++.++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999998764
No 256
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.17 E-value=0.082 Score=37.57 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCC--CeeeEEEEEecCHHHHHHHHHHhCCceeCC-----eEE
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTG--ESLCYAFVEFEKREACEQAYFKMNNALIDD-----RRI 283 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~~~~i~g-----~~l 283 (299)
.-+|.|..||+.+||+++.+.++..-.+..........+. ..-.-|||.|.+.++...-.+.++|+.+.+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 5679999999999999998888765443221111111111 112458999999999999999999987643 234
Q ss_pred EEEec
Q 046966 284 CVDFS 288 (299)
Q Consensus 284 ~v~~a 288 (299)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45555
No 257
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.49 E-value=0.047 Score=50.26 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=40.8
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHH
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYF 271 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~ 271 (299)
.+.|+|. .|..+++.+|.++|++||.|.++..-.+ .| -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh
Confidence 4789997 7999999999999999999999876554 23 599999999999887764
No 258
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.41 E-value=0.077 Score=39.84 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=53.2
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEE-EEEeec--------CCCC-----CeeeEEEEEecCHHHHHHHHHHhCCc
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVS-AEILRD--------YRTG-----ESLCYAFVEFEKREACEQAYFKMNNA 276 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~-~~~~~~--------~~~g-----~~~g~afv~f~~~~~a~~al~~l~~~ 276 (299)
...|.|-+.|++.. ..+.+.|++||.|.+ ...... +.+. .....-.|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677778877655 446678999999875 211110 0000 123566899999999999995 4999
Q ss_pred eeCCeEEEEEecCC
Q 046966 277 LIDDRRICVDFSQS 290 (299)
Q Consensus 277 ~i~g~~l~v~~a~~ 290 (299)
.++|..|-|...++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999887877653
No 259
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=86.41 E-value=2.9 Score=31.54 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=61.3
Q ss_pred CEEEEEEcceeEEEEecCCCChHHHHHHHHhh----hCCCcCCceeeEeecCcEEEecCCCCCCCCCCCCCCCccccccc
Q 046966 1 MSVLIETSLGDIVIDLFVDKCPRTTNNFLQHC----KNKYYNGCLFHNIHKDFIAQTGDPTGTGTGGRSVYEDRFFVDEI 76 (299)
Q Consensus 1 ~~v~~~T~~G~i~ieL~~~~~P~~~~nF~~l~----~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 76 (299)
|.|.+-.....+.++|+.. |.|++.|++.. +-..|. ..++--.|-.. . .+|
T Consensus 13 ~~~~~~~~~~~v~a~L~Dn--p~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~l-~--------------------~~e- 67 (136)
T 1zx8_A 13 MRVELLFESGKCVIDLNEE--YEVVKLLKEKIPFESVVNTWG-EEIYFSTPVNV-Q--------------------KME- 67 (136)
T ss_dssp EEEEEECSSCEEEEEEETT--SHHHHHHHHHCSEEEECEESS-SEEEEECSCCC-C--------------------CCS-
T ss_pred eEEEEeeCCcEEEEEEcCC--HHHHHHHHHHCCcEEEHHHhC-CcEEEECCccC-C--------------------CCC-
Confidence 5566777778899999744 88999999987 222353 33332222210 0 001
Q ss_pred ccCCCCCCceEEEEEcCCCCCCcceEEEEecCCCCCCC------CCceEEEEeecCHHHHHHH
Q 046966 77 RADLKHDKVGTVGMASAGRDLNASQFYITLRDNLHYLD------EKHTIFGEVAEGLETLTRI 133 (299)
Q Consensus 77 ~~~~~~~~~G~l~~~~~~~~~~~s~FfI~~~~~~~~ld------~~~~vfG~V~~G~~vl~~i 133 (299)
+.... ...|-|+.-..+ ..|.|-.++. +... ...++||+|.+|++.+..+
T Consensus 68 ~~~~~-~~~GDIaYw~pg-----g~LaIFyg~~-p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 68 NPREV-VEIGDVGYWPPG-----KALCLFFGKT-PMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp SEESS-BCTTEEEEEGGG-----TEEEEESSCC-TTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred CCCcc-CCCCcEEEeCCC-----CEEEEEeCCC-ccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 11111 256888876553 3588888873 3222 2368999999998877766
No 260
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.79 E-value=6.3 Score=36.61 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=45.4
Q ss_pred CceEEEEcCCCCCCHHHHHHhcccCCCeEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 046966 211 DNVLFVCQLNPVTEDEDLHVIFSQFGTVVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNN 275 (299)
Q Consensus 211 ~~~v~v~nL~~~~~e~~L~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~ 275 (299)
+..++|+ +|..+...+|.++|+.||. ..++++.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4556665 8888999999999999995 46666555 2699999999999999998853
No 261
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.89 E-value=13 Score=24.44 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=36.2
Q ss_pred CCCHHHHHHhcccCCC-----eEEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q 046966 222 VTEDEDLHVIFSQFGT-----VVSAEILRDYRTGESLCYAFVEFEKREACEQAYFKMNNALIDDRRICVDFSQ 289 (299)
Q Consensus 222 ~~~e~~L~~~f~~~G~-----i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~al~~l~~~~i~g~~l~v~~a~ 289 (299)
.+...+|..++..-+. |-.+.+..+ |.||+-.. ..+..+++.|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3455666666654333 345555332 78888874 56778888999999999999988764
No 262
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=41.55 E-value=22 Score=18.04 Aligned_cols=13 Identities=38% Similarity=0.393 Sum_probs=9.8
Q ss_pred CCCcceEEEEecC
Q 046966 96 DLNASQFYITLRD 108 (299)
Q Consensus 96 ~~~~s~FfI~~~~ 108 (299)
..-.|..||||.+
T Consensus 7 KR~aSSvFITLap 19 (26)
T 2k9u_B 7 KRVASSVFITLAP 19 (26)
T ss_dssp SSCEEEEEEEECC
T ss_pred hheeeeEEEEecC
Confidence 3446789999986
No 263
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=33.38 E-value=9.7 Score=18.87 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=12.6
Q ss_pred HHHHHhhhCCCcCCc
Q 046966 26 NNFLQHCKNKYYNGC 40 (299)
Q Consensus 26 ~nF~~l~~~~~y~~~ 40 (299)
.||.+-.+.|+|+|.
T Consensus 4 knfwsslrkgfydge 18 (26)
T 2khf_A 4 KNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHTTTH
T ss_pred HHHHHHHHhhcccch
Confidence 688888888999875
No 264
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.87 E-value=1.6e+02 Score=22.82 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=37.8
Q ss_pred CceEEEEcCCC-C--------CCHHHHHHhc--ccCCCeEEEEEeecCCCCCeeeEEEEEecCH-HHHHHHH
Q 046966 211 DNVLFVCQLNP-V--------TEDEDLHVIF--SQFGTVVSAEILRDYRTGESLCYAFVEFEKR-EACEQAY 270 (299)
Q Consensus 211 ~~~v~v~nL~~-~--------~~e~~L~~~f--~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~-~~a~~al 270 (299)
+.++.|-|+|. . .+..+|++.| ..|.++. ++...++ .-++|++.|.|.+. .-...|+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 35666778876 2 3447889877 8998765 5555553 34789999999854 3344444
Done!