BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046969
(697 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 27/224 (12%)
Query: 52 KPTKRLLQGLYGYAEPGRIMAIMGPSGSGKST---LLDSLAGRLSRHVIMTGNVL--FNG 106
+P +L+GL EPG+ +A++GPSG GKST LL+ L + + G+ + N
Sbjct: 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 107 KKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIK-----SHVDGTIL 161
+ TR +A V+QE L ++ E I Y PSS++ ++ +++ I
Sbjct: 1149 EHTRSQ---IAIVSQEPTLF-DCSIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIA 1201
Query: 162 ELGLHDCADTVIGNWHLRG--ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFV 219
EL + +T +G+ RG +SGG+K+R++IA ++ P++L LDE +S LD+ S V
Sbjct: 1202 EL--PEGFETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-KV 1255
Query: 220 IQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
+Q + AR+GRT I H+ ++ + A D + ++S G + G
Sbjct: 1256 VQEALDRAREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKG 1297
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 27/227 (11%)
Query: 51 NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR 110
++P +L+G+ G+ +A++G SG GKST++ L L + ++ G + +G R
Sbjct: 427 SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL---LRYYDVLKGKITIDGVDVR 483
Query: 111 VDSGV------LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL- 163
D + +A V+QE L T+ E I+ +++E++ + E
Sbjct: 484 -DINLEFLRKNVAVVSQEPALF-NCTIEENISLGKE-----GITREEMVAACKMANAEKF 536
Query: 164 --GLHDCADTVIGNWHLRG--ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFV 219
L + +T++G+ RG +SGG+K+R++IA ++ P++L LDE +S LD+ S V
Sbjct: 537 IKTLPNGYNTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593
Query: 220 IQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266
Q L A+ GRT I H+ S+ A D + G+ V G+ +
Sbjct: 594 QQALDKAAK-GRTTIIIAHRLSTIRNA--DLIISCKNGQVVEVGDHR 637
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
Query: 52 KPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111
+P+ +LQGL + G+ +A++G SG GKST++ L + M G+V +GK+ +
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQ 1099
Query: 112 DS-----GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL--G 164
+ L V+QE +L ++ E I Y + R+ S +E +++ + I +
Sbjct: 1100 LNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSY--EEIVRAAKEANIHQFIDS 1156
Query: 165 LHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
L D +T +G+ + +SGG+K+R++IA ++ +P +L LDE +S LD+ S V+Q
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEAL 1214
Query: 225 NIARDGRTVISSIHQPSS 242
+ AR+GRT I H+ S+
Sbjct: 1215 DKAREGRTCIVIAHRLST 1232
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 37/221 (16%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-- 113
++L+GL + G+ +A++G SG GKST + L RL + + G V +G+ R +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRL--YDPLDGMVSIDGQDIRTINVR 460
Query: 114 ---GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIK-SHVDGTILELGLHDCA 169
++ V+QE VL T T+ E I Y +ED+ ++ + E +D
Sbjct: 461 YLREIIGVVSQEPVLFAT-TIAENIRYG----------REDVTMDEIEKAVKEANAYDFI 509
Query: 170 -------DTVIGNWHLRG--ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220
DT++G RG +SGG+K+R++IA ++ P++L LDE +S LD+ S V+
Sbjct: 510 MKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVV 565
Query: 221 QTLRNIARDGRTVISSIHQPSS----EVFALFDDLFLLSGG 257
Q + AR+GRT I H+ S+ +V A FD ++ G
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
Query: 52 KPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV 111
+P+ +LQGL + G+ +A++G SG GKST++ L + M G+V +GK+ +
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE---RFYDPMAGSVFLDGKEIKQ 1099
Query: 112 DS-----GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILEL--G 164
+ L V+QE +L ++ E I Y + R+ S +E +++ + I +
Sbjct: 1100 LNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSY--EEIVRAAKEANIHQFIDS 1156
Query: 165 LHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
L D +T +G+ + +SGG+K+R++IA ++ +P +L LDE +S LD+ S V+Q
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEAL 1214
Query: 225 NIARDGRTVISSIHQPSS 242
+ AR+GRT I H+ S+
Sbjct: 1215 DKAREGRTCIVIAHRLST 1232
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 37/221 (16%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-- 113
++L+GL + G+ +A++G SG GKST + L RL + + G V +G+ R +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRL--YDPLDGMVSIDGQDIRTINVR 460
Query: 114 ---GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIK-SHVDGTILELGLHDCA 169
++ V+QE VL T T+ E I Y +ED+ ++ + E +D
Sbjct: 461 YLREIIGVVSQEPVLFAT-TIAENIRYG----------REDVTMDEIEKAVKEANAYDFI 509
Query: 170 -------DTVIGNWHLRG--ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220
DT++G RG +SGG+K+R++IA ++ P++L LDE +S LD+ S V+
Sbjct: 510 MKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVV 565
Query: 221 QTLRNIARDGRTVISSIHQPSS----EVFALFDDLFLLSGG 257
Q + AR+GRT I H+ S+ +V A FD ++ G
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 16/183 (8%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV-----LAYVTQE 122
G + A++GPSGSGKST+L L L + +G + +G R + V + V+QE
Sbjct: 370 GSVTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIK--SHVDGTILEL-GLHDCADTVIGNWHLR 179
+L + ++ E I Y A PSS++ E+I+ + V + + +TV+G +
Sbjct: 427 PILF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQ 239
+SGG+K+R++IA +L P++L LDE +S LD+ + + V + L + DGRTV+ H+
Sbjct: 484 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHR 541
Query: 240 PSS 242
S+
Sbjct: 542 LST 544
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 16/183 (8%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV-----LAYVTQE 122
G + A++GPSGSGKST+L L L + +G + +G R + V + V+QE
Sbjct: 401 GSVTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 457
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIK--SHVDGTILEL-GLHDCADTVIGNWHLR 179
+L + ++ E I Y A PSS++ E+I+ + V + + +TV+G +
Sbjct: 458 PILF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQ 239
+SGG+K+R++IA +L P++L LDE +S LD+ + + V + L + DGRTV+ H
Sbjct: 515 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHH 572
Query: 240 PSS 242
S+
Sbjct: 573 LST 575
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR----VDSGVLAYVTQEN 123
G MA++GPSGSGKSTLL ++AG +G + F+ K D V V Q
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDRNV-GLVFQNW 84
Query: 124 VLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN--WHLRGI 181
L +TV + I + LR + +D + E+ D ++ W L
Sbjct: 85 ALYPHMTVYKNIAFPLELRKAP-------REEIDKKVREVAKMLHIDKLLNRYPWQL--- 134
Query: 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQP 240
SGG+++R++IA ++ +P++L LDEP S LD+ V L+ + ++ G T + H
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD- 193
Query: 241 SSEVFALFDDLFLLSGGETVYFG 263
+E A+ D + ++ GE + G
Sbjct: 194 QAEALAMADRIAVIREGEILQVG 216
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Query: 54 TKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSL-------AGRLSRHVIMTGNVLFNG 106
++++L+ + A+P I+A GPSG GKST+ L AG ++ N+
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73
Query: 107 KKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
++++ +V+Q++ ++ T+RE +TY L + ED+ +D +
Sbjct: 74 WRSQI-----GFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVE 123
Query: 167 DCADTVIGNWHLRG--ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
+ D + RG ISGG+++RL+IA L P++L LDE ++ LDS S V + L
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 225 NIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGE 264
++ + GRT + H+ S+ V A D ++ + G+ G+
Sbjct: 184 SLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGK 220
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 22/200 (11%)
Query: 51 NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKST---LLDSLAGRLSRHVIMTGNVLFNGK 107
N P ++LQGL PG++ A++GP+GSGKST LL +L V++ G L
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD 87
Query: 108 KTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD 167
+ + V A V QE +L G + RE I Y +++ + +E G HD
Sbjct: 88 HHYLHTQVAA-VGQEPLLFGR-SFRENIAY--------GLTRTPTMEEITAVAMESGAHD 137
Query: 168 -------CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220
DT +G + +SGG+++ +++A ++ KP+LL LD+ +S LD+ + V
Sbjct: 138 FISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQ 196
Query: 221 QTLRNIAR-DGRTVISSIHQ 239
+ L RTV+ HQ
Sbjct: 197 RLLYESPEWASRTVLLITHQ 216
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 119/230 (51%), Gaps = 32/230 (13%)
Query: 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK---------- 107
L+G+ + G + AI+G +G GKSTL + G L +G +LF+ K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIM 80
Query: 108 KTRVDSGVLAYVTQENVLLGTLTVRETITYSA-HLRLPSSMSKEDIKSHVDGTILELGLH 166
K R G++ + +N L + +V + +++ A +++LP +++I+ VD + G+
Sbjct: 81 KLRESIGIV-FQDPDNQLF-SASVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIE 134
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
D +S G+KKR++IA ++ +P++L LDEP++GLD +++ L +
Sbjct: 135 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 227 ARD-GRTVISSIHQPSSEVFALF-DDLFLLSGGETVYFGEAKLAVEFFAE 274
++ G T+I + H ++ L+ D++F++ G + G K E FAE
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPK---EVFAE 234
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 21/183 (11%)
Query: 51 NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKST---LLDSLAGRLSRHVIMTGNVLFNGK 107
N P ++LQGL PG++ A++GP+GSGKST LL +L V++ G L
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD 87
Query: 108 KTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD 167
+ + V A V QE +L G + RE I Y +++ + +E G HD
Sbjct: 88 HHYLHTQV-AAVGQEPLLFGR-SFRENIAY--------GLTRTPTMEEITAVAMESGAHD 137
Query: 168 -------CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220
DT +G + +SGG+++ +++A ++ KP+LL LD +S LD+ + V
Sbjct: 138 FISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 221 QTL 223
+ L
Sbjct: 197 RLL 199
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 25/212 (11%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVL--------A 117
E G I+GPSG+GK+T + +AG V TG + F+ + + ++
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85
Query: 118 YVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWH 177
V Q L LT E I + MSKE+I+ V+ L +H N
Sbjct: 86 MVFQTWALYPNLTAFENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHVL-----NHF 137
Query: 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS---ASAFFVIQTLRNIARDGRTVI 234
R +SGG+++R+++A ++ P LL LDEP S LD+ SA +++ ++ +R G T++
Sbjct: 138 PRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLL 195
Query: 235 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266
H P +++FA+ D + +L G+ V G+ +
Sbjct: 196 VVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 20/203 (9%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-----GVLAYVTQE 122
G + +GPSG GKSTLL +AG I +G+ LF G+K D+ GV V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGD-LFIGEKRMNDTPPAERGV-GMVFQS 83
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
L L+V E +++ L + KE I V+ L L D + +S
Sbjct: 84 YALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALS 135
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSA-SAFFVIQTLRNIARDGRTVISSIHQPS 241
GG+++R++I ++ +P + LDEP S LD+A I+ R R GRT+I H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 242 SEVFALFDDLFLLSGGETVYFGE 264
E L D + +L G G+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 20/203 (9%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-----GVLAYVTQE 122
G + +GPSG GKSTLL +AG I +G+ LF G+K D+ GV V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGD-LFIGEKRMNDTPPAERGV-GMVFQS 83
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
L L+V E +++ L + KE I V+ L L D + +S
Sbjct: 84 YALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALS 135
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSA-SAFFVIQTLRNIARDGRTVISSIHQPS 241
GG+++R++I ++ +P + LDEP S LD+A I+ R R GRT+I H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 242 SEVFALFDDLFLLSGGETVYFGE 264
E L D + +L G G+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVL--------A 117
E G I+GPSG+GK+T + +AG V TG + F+ + + ++
Sbjct: 29 ENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85
Query: 118 YVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWH 177
V Q L LT E I + MSKE+I+ V+ L +H N
Sbjct: 86 MVFQTWALYPNLTAFENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHVL-----NHF 137
Query: 178 LRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDS---ASAFFVIQTLRNIARDGRTVI 234
R +SG +++R+++A ++ P LL LDEP S LD+ SA +++ ++ +R G T++
Sbjct: 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLL 195
Query: 235 SSIHQPSSEVFALFDDLFLLSGGETVYFGE 264
H P +++FA+ D + +L G+ V G+
Sbjct: 196 VVSHDP-ADIFAIADRVGVLVKGKLVQVGK 224
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 47 NFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG 106
+F N +L+ + E G +A +G SG GKSTL++ L R + + +G +L +G
Sbjct: 346 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRF--YDVTSGQILIDG 402
Query: 107 KKTR-VDSGVL----AYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKS--HVDGT 159
+ +G L V Q+N+L TV+E I L P++ +E +++ +
Sbjct: 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENIL----LGRPTATDEEVVEAAKMANAH 457
Query: 160 ILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFV 219
+ L DT +G ++ +SGG+K+RLSIA L P +L LDE +S LD S +
Sbjct: 458 DFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 220 IQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAG 276
+ L +++D RT + H+ S+ A D + ++ G V G + E A+ G
Sbjct: 517 QEALDVLSKD-RTTLIVAHRLSTITHA--DKIVVIENGHIVETGTHR---ELIAKQG 567
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 47 NFGNNKPTK-RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN 105
NF K T R L+ + + G A++G +GSGKST+ A L R G++
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI----AKLLYRFYDAEGDIKIG 79
Query: 106 GK---KTRVDS--GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTI 160
GK K +S ++ V Q+ +L ETI Y+ + +E IK+ +
Sbjct: 80 GKNVNKYNRNSIRSIIGIVPQDTILF-----NETIKYNILYGKLDATDEEVIKATKSAQL 134
Query: 161 LEL--GLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFF 218
+ L DT++GN ++ +SGGE++R++IA +L P+++ DE +S LDS + +
Sbjct: 135 YDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 219 VIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ + ++ R RT+I H+ S+ + + + LL+ G+ V G K ++ E
Sbjct: 194 FQKAVEDL-RKNRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLLKLNGE 246
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 20/203 (9%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-----GVLAYVTQE 122
G + +GPSG GKSTLL +AG I +G+ LF G+K D+ GV V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGL---ETITSGD-LFIGEKRMNDTPPAERGV-GMVFQS 83
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
L L+V E +++ L + KE I V+ L L D + +S
Sbjct: 84 YALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALS 135
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSA-SAFFVIQTLRNIARDGRTVISSIHQPS 241
GG+++R++I ++ +P + LD+P S LD+A I+ R R GRT+I H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 242 SEVFALFDDLFLLSGGETVYFGE 264
E L D + +L G G+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGK 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLA-------GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVT 120
G ++IMGPSGSGKST+L+ + G + I T N L + + T++ + +V
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT-NDLDDDELTKIRRDKIGFVF 89
Query: 121 QENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180
Q+ L+ LT E + + +MS E+ + LE + N
Sbjct: 90 QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA----LECLKMAELEERFANHKPNQ 145
Query: 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI-ARDGRTVISSIH 238
+SGG+++R++IA + P ++ D+P+ LDS + ++Q L+ + DG+TV+ H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-------- 108
+L+G+ + G ++I+G SGSGKSTLL L G L G V GK+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT--EGKVFLEGKEVDYTNEKE 75
Query: 109 -TRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD 167
+ + + L +V Q + L+ LT E + L K++ K + + ELGL D
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLGD 132
Query: 168 CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA 227
+SGGE++R++IA + +P LLF DEP+ LDSA+ V+ I
Sbjct: 133 KLSR-----KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 228 RDGRTVISSIHQ 239
G +++ H+
Sbjct: 188 EGGTSIVMVTHE 199
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK------- 107
K +L+GL PG + AIMGP+GSGKSTL +LAGR + + G V F GK
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSP 72
Query: 108 KTRVDSGV---LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG 164
+ R G+ Y + + ++ + R ++ + D + ++ I L
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 165 LHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
+ + T N G SGGEKKR I + +P+L LDE SGLD A V+
Sbjct: 133 MPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKVVADGV 188
Query: 225 NIARDGR 231
N RDG+
Sbjct: 189 NSLRDGK 195
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G SGSGKSTL L R ++ G VL +G R GV
Sbjct: 27 KQGEVIGIVGRSGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 81
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 82 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 126
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L DE +S LD S +++ + I
Sbjct: 127 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI H+ S+ A D + ++ G+ V G+ K E +E
Sbjct: 186 CK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G SGSGKSTL L R ++ G VL +G R GV
Sbjct: 33 KQGEVIGIVGRSGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 87
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 88 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 132
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L DE +S LD S +++ + I
Sbjct: 133 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI H+ S+ A D + ++ G+ V G+ K E +E
Sbjct: 192 CK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 233
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 14/226 (6%)
Query: 48 FGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL---SRHVIMTGNVLF 104
F N P +L G+ +PG ++A++G +GSGKSTL++ L RL R + +
Sbjct: 352 FENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPERGRVEVDELDV 407
Query: 105 NGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG 164
K + G ++ V QE VL T++E + + + + + + I+
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFII--S 464
Query: 165 LHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
L + D+ + R SGG+K+RLSIA ++ KP++L LD+ +S +D + ++ L+
Sbjct: 465 LPEGYDSRVERGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 225 NIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVE 270
+ T I + P++ L D + +L G+ FG K +E
Sbjct: 524 RYTKGCTTFIITQKIPTA---LLADKILVLHEGKVAGFGTHKELLE 566
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G SGSGKSTL L R ++ G VL +G R GV
Sbjct: 29 KQGEVIGIVGRSGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 83
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 84 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 128
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L DE +S LD S +++ + I
Sbjct: 129 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI H+ S+ A D + ++ G+ V G+ K E +E
Sbjct: 188 CK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 229
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK------- 107
K +L+GL PG + AIMGP+GSGKSTL +LAGR + + G V F GK
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSP 91
Query: 108 KTRVDSGV---LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELG 164
+ R G+ Y + + ++ + R ++ + D + ++ I L
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 165 LHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
+ + T N G SGGEKKR I + +P+L LDE SGLD A V+
Sbjct: 152 MPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKVVADGV 207
Query: 225 NIARDGR 231
N RDG+
Sbjct: 208 NSLRDGK 214
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 51 NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKST---LLDSLAGRLSRHVIMTGNVLFNGK 107
N P ++LQGL PG++ A++GP+GSGKST LL +L V++ G L
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD 87
Query: 108 KTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHD 167
+ + V A V QE +L G + RE I Y +++ + +E G HD
Sbjct: 88 HHYLHTQV-AAVGQEPLLFGR-SFRENIAY--------GLTRTPTMEEITAVAMESGAHD 137
Query: 168 -------CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220
DT +G + ++ G+++ +++A ++ KP+LL LD +S LD+ + V
Sbjct: 138 FISGFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 221 QTL 223
+ L
Sbjct: 197 RLL 199
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 16/197 (8%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAG--RLSRHVIMTGNVLFNGKKTRV----DSGVLAYVTQ 121
G M ++GPSG GK+T L +AG SR I G+ L + + +A V Q
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 122 ENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181
L +TV + I + LR + +++I V LGL T + N R +
Sbjct: 89 SYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL-----TELLNRKPREL 140
Query: 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVISSIHQP 240
SGG+++R+++ I+ KPQ+ +DEP S LD+ + L+ + R G T I H
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD- 199
Query: 241 SSEVFALFDDLFLLSGG 257
E + D + +++ G
Sbjct: 200 QVEAMTMGDRIAVMNRG 216
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 29/209 (13%)
Query: 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-TRVDSGVL----AYVTQ 121
PG+ +A++GPSG+GKST+L L + I +G + +G+ ++V L V Q
Sbjct: 79 PGQTLALVGPSGAGKSTILRLL---FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 122 ENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCA-------DTVIG 174
+ VL T+ + I Y R+ + V+ G+HD T +G
Sbjct: 136 DTVLFND-TIADNIRYG---RVTAG------NDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVI 234
L+ +SGGEK+R++IA IL P ++ LDE +S LD+++ + +L + + RT I
Sbjct: 186 ERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN-RTTI 243
Query: 235 SSIHQPSSEVFALFDDLFLLSGGETVYFG 263
H+ S+ V A D + ++ G V G
Sbjct: 244 VVAHRLSTVVNA--DQILVIKDGCIVERG 270
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 48 FGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107
F T + L + + G+I ++G SG+GKSTL+ + L R G+VL +G+
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPT--EGSVLVDGQ 67
Query: 108 K--TRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMS---KEDIKSHVDGTILE 162
+ T +S + Q ++ + + T ++ LP + K+++K V +
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL 127
Query: 163 LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT 222
+GL D D+ N +SGG+K+R++IA + + P++L DE +S LD A+ +++
Sbjct: 128 VGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 223 LRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPS 281
L++I R G T++ H+ V + D + ++S GE + E E F+ P
Sbjct: 183 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELI---EQDTVSEVFSHPKTPLAQ 238
Query: 282 R 282
+
Sbjct: 239 K 239
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLA-------GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVT 120
G ++IMGPSGSGKST+L+ + G + I T N L + + T++ + +V
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT-NDLDDDELTKIRRDKIGFVF 89
Query: 121 QENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180
Q+ L+ LT E + + +MS E+ + LE + N
Sbjct: 90 QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA----LECLKMAELEERFANHKPNQ 145
Query: 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI-ARDGRTVISSIH 238
+SGG+++R++IA + P ++ D+P+ LDS + ++Q L+ + DG+TV+ H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G +GSGKSTL L R ++ G VL +G R GV
Sbjct: 29 KQGEVIGIVGRAGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 83
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 84 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 128
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L DE +S LD S +++ + I
Sbjct: 129 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 187
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI H+ S+ A D + ++ G+ V G+ K E +E
Sbjct: 188 CK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 229
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G SGSGKSTL L R ++ G VL +G R GV
Sbjct: 33 KQGEVIGIVGRSGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 87
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 88 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 132
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L D+ +S LD S +++ + I
Sbjct: 133 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI 191
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI H+ S+ A D + ++ G+ V G+ K E +E
Sbjct: 192 CK-GRTVIIIAHRLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 233
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 17/210 (8%)
Query: 58 LQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT---RVDSG 114
L L E G I+GP+G+GK+ L+ +AG HV +G +L +GK +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF---HVPDSGRILLDGKDVTDLSPEKH 72
Query: 115 VLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIG 174
+A+V Q L + V++ + + ++ +D K +D T +L + D
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMK-----KIKDPKRVLD-TARDLKIEHLLDR--- 123
Query: 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVI 234
+ +SGGE++R+++A ++T P++L LDEP S LD + + L + + + +
Sbjct: 124 --NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 235 SSIHQPSSEVFALFDDLFLLSGGETVYFGE 264
I +E + D + ++ G+ + G+
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGK 211
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 48 FGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107
F T + L + + G+I ++G SG+GKSTL+ + L R G+VL +G+
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPT--EGSVLVDGQ 90
Query: 108 K--TRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMS---KEDIKSHVDGTILE 162
+ T +S + Q ++ + + T ++ LP + K+++K V +
Sbjct: 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL 150
Query: 163 LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT 222
+GL D D+ N +SGG+K+R++IA + + P++L D+ +S LD A+ +++
Sbjct: 151 VGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 223 LRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPS 281
L++I R G T++ H+ V + D + ++S GE + E E F+ P
Sbjct: 206 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELI---EQDTVSEVFSHPKTPLAQ 261
Query: 282 R 282
+
Sbjct: 262 K 262
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 18/241 (7%)
Query: 48 FGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGK 107
F T + L + + G+I ++G SG+GKSTL+ + L R G+VL +G+
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPT--EGSVLVDGQ 90
Query: 108 K--TRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMS---KEDIKSHVDGTILE 162
+ T +S + Q + + + T ++ LP + K+++K V +
Sbjct: 91 ELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL 150
Query: 163 LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQT 222
+GL D D+ N +SGG+K+R++IA + + P++L D+ +S LD A+ +++
Sbjct: 151 VGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 223 LRNIARD-GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPS 281
L++I R G T++ H+ V + D + ++S GE + E E F+ P
Sbjct: 206 LKDINRRLGLTILLITHEXDV-VKRICDCVAVISNGELI---EQDTVSEVFSHPKTPLAQ 261
Query: 282 R 282
+
Sbjct: 262 K 262
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFN---GKKTRVDS 113
L Q L G I+A++G +G GKSTLLD L G H + G + G + S
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI---HRPIQGKIEVYQSIGFVPQFFS 76
Query: 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVI 173
AY + VL+G S H+ ++ +K KSH D + L T +
Sbjct: 77 SPFAYSVLDIVLMGR---------STHI---NTFAKP--KSH-DYQVAMQALDYLNLTHL 121
Query: 174 GNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR-DGRT 232
+SGG+++ + IA I ++ +L+ LDEP+S LD A+ V+ L ++A+ T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 233 VISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266
V+ + HQP ++V A+ + LL+ + FGE +
Sbjct: 182 VVFTTHQP-NQVVAIANKTLLLN-KQNFKFGETR 213
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLD--SLAGRLSRHVIMTGNVLFNGKKTRVDS 113
+L+G+ + G ++ ++GPSGSGKST L +L I+ + K T ++
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 114 --GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSK---EDIKSHVDGTILELGLHDC 168
+ V Q L +TV IT + P + K E ++ + ++GL D
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDK 131
Query: 169 ADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
A + + +SGG+ +R++IA + +P+++ DEP+S LD V+ ++ +A
Sbjct: 132 A-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 229 DGRTVISSIHQ 239
+G T++ H+
Sbjct: 187 EGMTMVVVTHE 197
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 23/190 (12%)
Query: 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT-----RV 111
+L+ + E G+I ++G +GSGK+TLL LAG L+ G + +G R
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA----AAGEIFLDGSPADPFLLRK 81
Query: 112 DSGVLAYVTQE--NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCA 169
+ G YV Q + ++G TV E + +S + + + +++ + + +GL A
Sbjct: 82 NVG---YVFQNPSSQIIGA-TVEEDVAFSLEI---MGLDESEMRKRIKKVLELVGLSGLA 134
Query: 170 DTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229
N +SGG+K+RL+IA + + L LDEP S LD S + Q L ++ +
Sbjct: 135 AADPLN-----LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 230 GRTVISSIHQ 239
G+ +I H+
Sbjct: 190 GKGIILVTHE 199
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLD--SLAGRLSRHVIMTGNVLFNGKKTRVDS 113
+L+G+ + G ++ ++GPSGSGKST L +L I+ + K T ++
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 114 --GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSK---EDIKSHVDGTILELGLHDC 168
+ V Q L +TV IT + P + K E ++ + ++GL D
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDK 152
Query: 169 ADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
A + + +SGG+ +R++IA + +P+++ DEP+S LD V+ ++ +A
Sbjct: 153 A-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 229 DGRTVISSIHQ 239
+G T++ H+
Sbjct: 208 EGMTMVVVTHE 218
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 15/266 (5%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAG--RLSRHVIMTGNVLFNGKKTRVDS 113
+ + G+ + G +A++GPSG GK+T L LAG + + I +VL N +
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 114 GVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVI 173
+ V Q L +TV E I + R S K V+ ++E+ D ++
Sbjct: 77 --VGMVFQNYALYPHMTVFENIAFPLRARRIS-------KDEVEKRVVEIARKLLIDNLL 127
Query: 174 GNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRT 232
+ +SGG+++R+++A ++ +P++L DEP S LD+ + ++++ ++ G T
Sbjct: 128 DRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 233 VISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGFPCPSRRNPSDHFLRC 292
+ H +E + + + + G+ V +G V + F NP +FLR
Sbjct: 187 SVYVTHD-QAEAMTMASRIAVFNQGKLVQYGTPD-EVYDSPKNMFVASFIGNPPTNFLRD 244
Query: 293 VNSDFDAVTTTLKGSQRIRDVPSSSD 318
+ + T LK I +P D
Sbjct: 245 FSVSVENKQTILKRDDVIIKLPEPVD 270
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G SGSGKSTL L R ++ G VL +G R GV
Sbjct: 27 KQGEVIGIVGRSGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 81
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 82 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 126
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L DE +S LD S +++ + I
Sbjct: 127 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI + S+ A D + ++ G+ V G+ K E +E
Sbjct: 186 CK-GRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 46/228 (20%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT--------RVDSGVLA 117
+ G ++ I+G SGSGKSTL L R ++ G VL +G R GV
Sbjct: 33 KQGEVIGIVGRSGSGKSTLT-KLIQRF--YIPENGQVLIDGHDLALADPNWLRRQVGV-- 87
Query: 118 YVTQENVLLGTLTVR-----------ETITYSAHLRLPSSMSKEDIKSHVDGTILELGLH 166
V Q+NVLL + E + Y+A L E L
Sbjct: 88 -VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--------------LR 132
Query: 167 DCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
+ +T++G G+SGG+++R++IA ++ P++L DE +S LD S +++ + I
Sbjct: 133 EGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 227 ARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAE 274
+ GRTVI + S+ A D + ++ G+ V G+ K E +E
Sbjct: 192 CK-GRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHK---ELLSE 233
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLA-------GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVT 120
G ++I GPSGSGKST L+ + G + I T N L + + T++ + +V
Sbjct: 31 GEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKT-NDLDDDELTKIRRDKIGFVF 89
Query: 121 QENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180
Q+ L+ LT E + + + S E+ + LE + N
Sbjct: 90 QQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRA----LECLKXAELEERFANHKPNQ 145
Query: 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI-ARDGRTVISSIH 238
+SGG+++R++IA + P ++ DEP+ LDS + + Q L+ + DG+TV+ H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 38/223 (17%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR---VD 112
R ++G+ G ++ ++GPSGSGK+T+L +AG L R G+V GK+
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPT--KGDVWIGGKRVTDLPPQ 85
Query: 113 SGVLAYVTQENVLLGTLTVRETITYS-AHLRLPSSMSKEDIKSHVDGTILELGLHDCADT 171
+ V Q L +TV + +++ R+P K +D + EL L
Sbjct: 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP--------KDEMDARVREL-LRFMRLE 136
Query: 172 VIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGR 231
N +SGG+++R+++A + +PQ+L DEP + +D+ I R+ R
Sbjct: 137 SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT-----------QIRRELR 185
Query: 232 TVISSIH-----------QPSSEVFALFDDLFLLSGGETVYFG 263
T + +H E + D + +L G FG
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 121/234 (51%), Gaps = 30/234 (12%)
Query: 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNG------KK 108
K +L+ + + +PG+ +A++GP+GSGK+T+++ L + + + G +L +G K+
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL---MRFYDVDRGQILVDGIDIRKIKR 424
Query: 109 TRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIK-----SHVDGTILEL 163
+ + S + V Q+ +L T TV+E + Y P + + E+IK +H D I
Sbjct: 425 SSLRSSI-GIVLQDTILFST-TVKENLKYGN----PGA-TDEEIKEAAKLTHSDHFIKH- 476
Query: 164 GLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL 223
L + +TV+ + + +S G+++ L+I L P++L LDE +S +D+ + + +
Sbjct: 477 -LPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534
Query: 224 RNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAGF 277
+ +G+T I H+ ++ A D + +L GE V G+ E + GF
Sbjct: 535 WKLM-EGKTSIIIAHRLNTIKNA--DLIIVLRDGEIVEMGKHD---ELIQKRGF 582
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 24/218 (11%)
Query: 51 NKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKST---LLDSLAGRLSRHVIMTGNVLFNGK 107
N+P +LQGL PG + A++GP+GSGKST LL +L + G +L +GK
Sbjct: 26 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL------YQPTGGQLLLDGK 79
Query: 108 -----KTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPS--SMSKEDIKSHVDGTI 160
+ R +A V QE + G +++E I Y + P+ ++ +KS I
Sbjct: 80 PLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFI 137
Query: 161 LELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVI 220
GL DT + + +SGG+++ +++A ++ KP +L LD+ +S LD+ S V
Sbjct: 138 --SGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 194
Query: 221 QTL-RNIARDGRTVISSIHQPSSEVFALFDDLFLLSGG 257
Q L + R R+V+ S + D + L GG
Sbjct: 195 QLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGG 230
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 24/207 (11%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSR---HVIMTGNVLFNGKKTRVDSGVLAYVTQENV 124
G ++AI+GP+G+GKSTLL L G LS + G L N + + + A + Q +
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL-NSWQPKALARTRAVMRQYSE 95
Query: 125 LLGTLTVRETITYSAHLRLP--SSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
L +V E I R P S ++ ++ + T DC + R +S
Sbjct: 96 LAFPFSVSEVIQMG---RAPYGGSQDRQALQQVMAQT-------DC--LALAQRDYRVLS 143
Query: 183 GGEKKRLSIA--LEILTKPQ----LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISS 236
GGE++R+ +A L L +PQ LFLDEP+S LD ++ LR + R +
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203
Query: 237 IHQPSSEVFALFDDLFLLSGGETVYFG 263
+ + D + LL+ G+ V G
Sbjct: 204 VLHDLNLAALYADRIMLLAQGKLVACG 230
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 28/209 (13%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTR------VDSGVLAYVTQ 121
G+I+ ++G +G+GK+T L ++AG + G ++FNG+ ++ +A V +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRXGIALVPE 88
Query: 122 ENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTI-----LELGLHDCADTVIGNW 176
+ LTV E + A+ R KE IK ++ L+ L T
Sbjct: 89 GRRIFPELTVYENLXXGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGT----- 139
Query: 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISS 236
+SGGE++ L+I + ++P+LL DEPS GL V + ++ I ++G T++
Sbjct: 140 ----LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL-L 194
Query: 237 IHQPSSEVFALFDDLFLLSGGETVYFGEA 265
+ Q + + ++L G+ V G+A
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKA 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAG--RLSR-HVIMTGNVLFNGKKTRVDSGV--------L 116
G + ++GPSG GK+T L +AG +R + + N++ + +K GV +
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEK-----GVFVPPKERDV 86
Query: 117 AYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNW 176
A V Q L TV + I + LR + K++I V LGL T + N
Sbjct: 87 AXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGL-----TELLNR 138
Query: 177 HLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD-GRTVIS 235
R +SGG+++R+++ I+ +P++ DEP S LD+ L+ + R G T I
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 236 SIHQPSSEVFALFDDLFLLSGGETVYFG 263
H E D + + + GE G
Sbjct: 199 VTHD-QVEAXTXGDRIAVXNKGELQQVG 225
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 73 IMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---DSGVLAYVTQENVLLGTL 129
++GP+G+GKS L+ +AG + G V NG + + +V Q+ L L
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRL 189
+V I Y ++ + + V +LG+ D +SGGE++R+
Sbjct: 86 SVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRV 135
Query: 190 SIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFD 249
++A ++ +P+LL LDEP S +D + +++ LR + R+ I + E L D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 250 DLFLLSGGETVYFGEAK 266
++ ++ G V G+ K
Sbjct: 196 EVAVMLNGRIVEKGKLK 212
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 18/203 (8%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSR-HVIMTGNVLFNGKKTRVDSGV------LAYVT 120
G+ +A++G SGSGKST+ A +R + + +G++ +G R D + A V+
Sbjct: 369 GKTVALVGRSGSGKSTI----ANLFTRFYDVDSGSICLDGHDVR-DYKLTNLRRHFALVS 423
Query: 121 QENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRG 180
Q NV L T+ I Y+A ++ + +E + DTVIG +
Sbjct: 424 Q-NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE-NMPQGLDTVIGE-NGTS 480
Query: 181 ISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQP 240
+SGG+++R++IA +L +L LDE +S LD+ S + L + ++ +TV+ H+
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAHRL 539
Query: 241 SSEVFALFDDLFLLSGGETVYFG 263
S+ D++ ++ GE + G
Sbjct: 540 ST--IEQADEILVVDEGEIIERG 560
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKST---LLDSLAGRLSRHVIMTG-NVLFNGKKTR 110
K +L+G+ E G I ++GP+G+GK+T ++ +L S V + G NV+ + R
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87
Query: 111 VDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCAD 170
+++Y+ +E + E + + A SS +I+ V+ GL +
Sbjct: 88 ---KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS---SEIEEMVERATEIAGLGEKIK 141
Query: 171 TVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDG 230
+ + S G ++L IA ++ P+L LDEP+SGLD +A V + L+ +++G
Sbjct: 142 DRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 231 RTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
T++ S H EV L D + L+ G V G
Sbjct: 197 LTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT----- 109
K+ L+ + G + + G +GSGKSTLL +AG + +G+VL++G++
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEI 76
Query: 110 RVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCA 169
R + G+ A+ E+ V + + ++ P +K ++ L+ D
Sbjct: 77 RRNIGI-AFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---DSF 131
Query: 170 DTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229
+ + +SGGEK+R++IA I+ +P +L LDEP GLD +++ +
Sbjct: 132 KDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187
Query: 230 GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
G+TVI H + V D + +L G+ V+ G
Sbjct: 188 GKTVILISHDIET-VINHVDRVVVLEKGKKVFDG 220
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 55 KRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKT----- 109
K+ L+ + G + + G +GSGKSTLL +AG + +G+VL++G++
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEI 78
Query: 110 RVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCA 169
R + G+ A+ E+ V + + ++ P +K ++ L+ D
Sbjct: 79 RRNIGI-AFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---DSF 133
Query: 170 DTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229
+ + +SGGEK+R++IA I+ +P +L LDEP GLD +++ +
Sbjct: 134 KDRVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 189
Query: 230 GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
G+TVI H + V D + +L G+ V+ G
Sbjct: 190 GKTVILISHDIET-VINHVDRVVVLEKGKKVFDG 222
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 57 LLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-------T 109
+L+G+ G + A+MGP+G+GKSTL LAG + + G +L +G+
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENILELSPDE 76
Query: 110 RVDSGV-LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDC 168
R G+ LA+ Q V + +T+ + + +L + + + V L L D
Sbjct: 77 RARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA---LELLDW 131
Query: 169 ADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
++ + + G SGGEKKR I ++ +P LDE SGLD A V+ N R
Sbjct: 132 DESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVVARGVNAMR 190
Query: 229 D---GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEA 275
G VI+ H + D + ++ G V G +LA+E A+
Sbjct: 191 GPNFGALVIT--HYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLG 127
G ++ I+GP+G+GK+T + LAG+L ++ + N + + + Y + L
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER----LK 172
Query: 128 TLTVRETITYSAHLRLPSSMSKE--DIKSHVD--GTILELGLHDCADTVIGNWHLRGISG 183
+R + LP ++ + ++ VD G E+ + V+ + L +SG
Sbjct: 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL-DRELHQLSG 231
Query: 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSE 243
GE +R++IA +L K F DEPSS LD V + +R +A +G+ V+ H +
Sbjct: 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-- 289
Query: 244 VFALFDDLFLLSGGETVYFG 263
V D+ + GE +G
Sbjct: 290 VLDYLSDVIHVVYGEPGVYG 309
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
G G ++ I+GP+G GK+T + LAG G V ++ +AY Q
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKVEWDL--------TVAYKPQY 425
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
TV E ++ +L S+ K ++ + LG+ D D ++ +S
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTEL-------LKPLGIIDLYDR-----NVEDLS 473
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
GGE +R++IA +L + LDEPS+ LD V + +R++
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLG 127
G ++ I+GP+G+GK+T + LAG+L ++ + N + + + Y + L
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER----LK 158
Query: 128 TLTVRETITYSAHLRLPSSMSKE--DIKSHVD--GTILELGLHDCADTVIGNWHLRGISG 183
+R + LP ++ + ++ VD G E+ + V+ + L +SG
Sbjct: 159 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL-DRELHQLSG 217
Query: 184 GEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSE 243
GE +R++IA +L K F DEPSS LD V + +R +A +G+ V+ H +
Sbjct: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-- 275
Query: 244 VFALFDDLFLLSGGETVYFG 263
V D+ + GE +G
Sbjct: 276 VLDYLSDVIHVVYGEPGVYG 295
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
G G ++ I+GP+G GK+T + LAG G V ++ +AY Q
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV---EEPTEGKVEWDL--------TVAYKPQY 411
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
TV E ++ +L S+ K ++ + LG+ D D ++ +S
Sbjct: 412 IKAEYEGTVYELLSKIDSSKLNSNFYKTEL-------LKPLGIIDLYDR-----NVEDLS 459
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
GGE +R++IA +L + LDEPS+ LD V + +R++
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 503
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 70 IMAIMGPSGSGKSTLLDSLAGRLSRH-VIMTGNVLFNGK-----------KTRVDSGVLA 117
+ AI+G S SGKST+++++ L + I++G VL+ GK K R L
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 118 YVTQENVLLGTLTVRETI--TYSAH-LRLPSSMSKEDIKSHVDGTILELGLHDCADTVIG 174
+ L T+ V E T AH +R S E + L + V+
Sbjct: 96 PQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLN------PEAVLN 149
Query: 175 NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVI 234
++ L+ +SGG K+R+ IAL +L P +L LDEP+S LD + +IQ L+ + + + +
Sbjct: 150 SYPLQ-LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITL 208
Query: 235 SSIHQPSSEVFALFDDLFLLSGGETVYFG 263
+ + L D + ++ GG V +
Sbjct: 209 IFVTHDIAVAAELADKVAVIYGGNLVEYN 237
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 27/208 (12%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVI------------MTGNVLFNGKKTRVDSGV 115
G ++ I+GP+G+GKST + LAG+L ++ GN L N + + +
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN 175
V + V L I + ++ + K D ++ + L L + + I
Sbjct: 107 RPVVKPQYVDL--------IPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI-- 156
Query: 176 WHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVIS 235
HL SGGE +R++IA +L F DEPSS LD + +R ++ +G++V+
Sbjct: 157 QHL---SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213
Query: 236 SIHQPSSEVFALFDDLFLLSGGETVYFG 263
H + V D+ + GE +G
Sbjct: 214 VEHDLA--VLDYLSDIIHVVYGEPGVYG 239
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
G + G ++ I+GP+G GK+T + LAG G + ++ +AY Q
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGV---EEPTEGKIEWDL--------TVAYKPQY 355
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
TV E ++ +L S+ K ++ + LG+ D D + +S
Sbjct: 356 IKADYEGTVYELLSKIDASKLNSNFYKTEL-------LKPLGIIDLYDREVNE-----LS 403
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNI 226
GGE +R++IA +L + LDEPS+ LD V + +R++
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-----GVLAYVTQE 122
G+ +A++G SGSGKST+ SL R + I G +L +G R + +A V+Q
Sbjct: 369 GKTVALVGRSGSGKSTIA-SLITRF--YDIDEGEILMDGHDLREYTLASLRNQVALVSQ- 424
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
NV L TV I Y+ + +E + + + + DTVIG + +S
Sbjct: 425 NVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN-KMDNGLDTVIGENGVL-LS 482
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSS 242
GG+++R++IA +L +L LDE +S LD+ S + L + ++ RT + H+ S+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLST 541
Query: 243 EVFALFDDLFLLSGGETVYFG 263
A D++ ++ G V G
Sbjct: 542 IEKA--DEIVVVEDGVIVERG 560
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 18/154 (11%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAG---RLSRHVIMTGNVLFNGKKTR--VDSGVLAYVT 120
+PG I+ I+G SG GK+TLL LAG S + ++G +F+ K T V L Y+
Sbjct: 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS-KNTNLPVRERRLGYLV 86
Query: 121 QENVLLGTLTVRETITYS-AHLRLPSSMSKEDIKSHVDGTILEL-GLHDCADTVIGNWHL 178
QE VL LTV I Y + + ++ ++ I++ +LEL G+ + A +
Sbjct: 87 QEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA-----MLELTGISELA-----GRYP 136
Query: 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLD 212
+SGG+++R ++A + P+L+ LDEP S LD
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 30/215 (13%)
Query: 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV----- 115
L G G I+ ++GP+G+GKSTLL AG S G++ F G+ S
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS----GKGSIQFAGQPLEAWSATKLALH 74
Query: 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN 175
AY++Q+ V +T H ++ ++ + V G + D +G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGAL-------ALDDKLGR 122
Query: 176 WHLRGISGGEKKRLSIALEIL-----TKP--QLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
+SGGE +R+ +A +L P QLL LDEP + LD A + + L +++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 229 DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
G ++ S H + +LL GG+ + G
Sbjct: 182 QGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Query: 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV----- 115
L G G I+ ++GP+G+GKSTLL AG S G++ F G+ S
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS----GKGSIQFAGQPLEAWSATKLALH 74
Query: 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN 175
AY++Q+ V +T H ++ ++ + V G + D +G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGAL-------ALDDKLGR 122
Query: 176 WHLRGISGGEKKRLSIALEIL-----TKP--QLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
+SGGE +R+ +A +L P QLL LDEP + LD A + + L + +
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 229 DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
G ++ S H + +LL GG+ + G
Sbjct: 182 QGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 67 PGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDS-----GVLAYVTQ 121
G+ +A++G SGSGKST+ SL R + I G++L +G R + +A V+Q
Sbjct: 368 AGKTVALVGRSGSGKSTIA-SLITRF--YDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 122 ENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGI 181
NV L TV I Y+ +E + + + + DT+IG + +
Sbjct: 425 -NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN-KMDNGLDTIIGENGVL-L 481
Query: 182 SGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPS 241
SGG+++R++IA +L +L LDE +S LD+ S + L + ++ RT + H+ S
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLS 540
Query: 242 SEVFALFDDLFLLSGGETVYFGEAKLAVEFFAEAG 276
+ D++ ++ G V G E A+ G
Sbjct: 541 T--IEQADEIVVVEDGIIVERGTHS---ELLAQHG 570
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 14/199 (7%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---DSGVLAYVTQENV 124
G + ++GPSG GK+T L +AG G + F + ++ V Q
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 125 LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184
+ +TV E I + ++ K++I V L + + N + +SGG
Sbjct: 94 VWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL-----NRYPAQLSGG 145
Query: 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEV 244
+++R+++A I+ +P +L +DEP S LD+ + ++ + + + + E
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205
Query: 245 FALFDDLFLLSGGETVYFG 263
+ D + +++ G+ + G
Sbjct: 206 MTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 14/199 (7%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRV---DSGVLAYVTQENV 124
G + ++GPSG GK+T L +AG G + F + ++ V Q
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYA 94
Query: 125 LLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184
+ +TV E I + ++ K++I V L + + N + +SGG
Sbjct: 95 VWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL-----NRYPAQLSGG 146
Query: 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEV 244
+++R+++A I+ +P +L +DEP S LD+ + ++ + + + + E
Sbjct: 147 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 206
Query: 245 FALFDDLFLLSGGETVYFG 263
+ D + +++ G+ + G
Sbjct: 207 MTMGDRIAVMNRGQLLQIG 225
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 30/215 (13%)
Query: 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV----- 115
L G G I+ ++GP+G+GKSTLL +AG S G++ F G+ S
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN 175
AY++Q+ V +T H + ++ ++ + V G + D +G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK-----TRTELLNDVAGAL-------ALDDKLGR 122
Query: 176 WHLRGISGGEKKRLSIALEIL-----TKP--QLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
+SGGE +R+ +A +L P QLL LD+P + LD A + + L +++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 229 DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
G ++ S H + +LL GG+ + G
Sbjct: 182 QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 30/215 (13%)
Query: 61 LYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV----- 115
L G G I+ ++GP+G+GKSTLL +AG S G++ F G+ S
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 116 LAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGN 175
AY++Q+ V +T H + ++ ++ + V G + D +G
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDK-----TRTELLNDVAGAL-------ALDDKLGR 122
Query: 176 WHLRGISGGEKKRLSIALEIL-----TKP--QLLFLDEPSSGLDSASAFFVIQTLRNIAR 228
+SGGE +R+ +A +L P QLL LD+P LD A + + L +++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 229 DGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 263
G ++ S H + +LL GG+ + G
Sbjct: 182 QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206
+SK D + + ++G+ + A G + + +SGG+++R+SIA + +P +L DE
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQ---GKYPVH-LSGGQQQRVSIARALAMEPDVLLFDE 179
Query: 207 PSSGLDSASAFFVIQTLRNIARDGRTVISSIHQ 239
P+S LD V++ ++ +A +G+T++ H+
Sbjct: 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 32/185 (17%)
Query: 45 LPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLF 104
L G K K +L+ + G + G +G+GK+TLL+ L + +G V
Sbjct: 24 LDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN---AYEPATSGTVNL 80
Query: 105 NGKKTRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKED-IKSHVDGTILEL 163
GK G + Y + TVR+ I + +H L E I + G +
Sbjct: 81 FGKX----PGKVGYSAE--------TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI 128
Query: 164 GLHDCADTVIGN----------------WHLRGISGGEKKRLSIALEILTKPQLLFLDEP 207
G++ D I N ++ +S GEK+R+ IA + +PQ+L LDEP
Sbjct: 129 GVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEP 188
Query: 208 SSGLD 212
++GLD
Sbjct: 189 AAGLD 193
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 49 GNNKPTKRLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK 108
G +KP +L+ + E G ++ GP+G GK+TLL +++ L + G +++NG
Sbjct: 19 GYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVP 72
Query: 109 TRVDSGVLAYVTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGT-ILELGLHD 167
G + ++ +E ++ ++V + + A L ++K +I ++ +L+L
Sbjct: 73 ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-YGVKVNKNEIMDALESVEVLDL---- 127
Query: 168 CADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIA 227
L +S G +R+ +A +L ++ LD+P +D S V++++ I
Sbjct: 128 -------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 228 RD-GRTVISS 236
++ G +ISS
Sbjct: 181 KEKGIVIISS 190
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 29/175 (16%)
Query: 63 GYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
G A+ G I+ I+GP+G GK+T L G ++ D G VT E
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEIT-----------------ADEGS---VTPE 328
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSH----VDGTILELGLHDCADTVIGNWHL 178
+L R Y ++ + +D S + L LH ++ + +
Sbjct: 329 KQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND--- 385
Query: 179 RGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTV 233
+SGGE ++L IA + + L LD+PSS LD + V + ++ + R+ + V
Sbjct: 386 --LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 22/253 (8%)
Query: 61 LYGYAEPGR--IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAY 118
L+G P I+ ++G +G GK+T+L LAG + + + + + + G Y
Sbjct: 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 119 VTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIG---- 174
+ + L + I Y + + +I + +D E G D ++
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----ERGKKDEVKELLNMTNL 131
Query: 175 -NWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTV 233
N +SGG +RL +A +L + + D+PSS LD + + +R + ++ + V
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN-KYV 190
Query: 234 ISSIHQPSSEVFALFDDLFLLSGGETVYFGE------AKLAVEFFAEAGFPCPSRRNPSD 287
I H V DL + GE+ +G A++ + F + P + + D
Sbjct: 191 IVVDHDLI--VLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPD 248
Query: 288 H--FLRCVNSDFD 298
F+ SD D
Sbjct: 249 EIKFMLKEVSDLD 261
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 94/210 (44%), Gaps = 25/210 (11%)
Query: 67 PGRIMAIMGPSGSGKSTLLDSLAGRLS------------RHVI--MTGNVLFNGKKTRVD 112
PG+++ ++G +G GKST L LAG+ + +I G+ L N ++
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 113 SGVLAYVTQENVLLGTLTVRETITYSAH-LRLPSSMSKEDIKSHVDGTILELGLHDCADT 171
+ A + + V ++ + L+L S ED+K ++ IL+L +
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI--KILQL------EN 213
Query: 172 VIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGR 231
V+ + +SGGE +R +I + + + + DEPSS LD Q +R++ +
Sbjct: 214 VL-KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 232 TVISSIHQPSSEVFALFDDLFLLSGGETVY 261
VI H S + L D + ++ G +VY
Sbjct: 273 YVICVEHDLSVLDY-LSDFVCIIYGVPSVY 301
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 25/156 (16%)
Query: 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLGTL 129
I+ +MG +G+GK+TL+ LAG L + D G + + NV +
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGAL-----------------KPDEG--QDIPKLNVSMKPQ 420
Query: 130 TVRETITYSAHLRLPSSMSKEDIKSHVDGTILE-LGLHDCADTVIGNWHLRGISGGEKKR 188
+ + + + + +++ L + D D ++ +SGGE +R
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-----QEVQHLSGGELQR 475
Query: 189 LSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLR 224
++I L + + +DEPS+ LDS + +R
Sbjct: 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 29/229 (12%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-TRVDSG 114
+ L G+ G + I+GP+GSGKSTL++ + G L G V F K T +
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 115 VLAY----------------VTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDG 158
L + EN+L+G + E+ S L + KE+
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNS--LFYKKWIPKEEEMVEKAF 135
Query: 159 TILE-LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAF 217
ILE L L D G +SGG+ K + I ++T P+++ +DEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 218 FVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266
+ + + G T + H+ V D L+++ G+ + G +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 29/217 (13%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKK-TRVDSGVLAY-------- 118
G + I+GP+GSGKSTL++ + G L G V F K T + L +
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 119 --------VTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILE-LGLHDCA 169
EN+L+G + E+ S L + KE+ ILE L L
Sbjct: 90 TPQPLKEMTVLENLLIGEINPGESPLNS--LFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147
Query: 170 DTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARD 229
D G +SGG+ K + I ++T P+++ +DEP +G+ A + + +
Sbjct: 148 DRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 230 GRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266
G T + H+ V D L+++ G+ + G +
Sbjct: 203 GITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQ--ENVL 125
G + I+GP+GSGK+TLL +++G L +GN+ NG + R + Y T E
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVRKIRNYIRYSTNLPEAYE 85
Query: 126 LGTLTVRETITYSAHLR-LPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG 184
+G +TV + + L+ L + E +K+ L+LG I L +S G
Sbjct: 86 IG-VTVNDIVYLYEELKGLDRDLFLEMLKA------LKLGEE------ILRRKLYKLSAG 132
Query: 185 EKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDG 230
+ + +L + ++P+++ LDEP +D+A + + ++ ++G
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 29/229 (12%)
Query: 56 RLLQGLYGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGV 115
+ L G+ G + I+GP+GSGKSTL++ + G L G V F K
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 116 LAY-----------------VTQENVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDG 158
Y EN+L+G + E+ S L + KE+
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNS--LFYKKWIPKEEEMVEKAF 135
Query: 159 TILE-LGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAF 217
ILE L L D G +SGG+ K + I ++T P+++ +D+P +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 218 FVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 266
+ + + G T + H+ V D L+++ G+ + G +
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 22/199 (11%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLLG 127
G ++A++G G GKS+LL +L + + + G+V G +AYV Q+ +
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKGS--------VAYVPQQ-AWIQ 78
Query: 128 TLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKK 187
++RE I + L P S I++ LE+ L T IG + +SGG+K+
Sbjct: 79 NDSLRENILFGCQLEEPYYRSV--IQACALLPDLEI-LPSGDRTEIGEKGVN-LSGGQKQ 134
Query: 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL---RNIARDGRTVISSIHQPSSEV 244
R+S+A + + + D+P S +D+ + + + + + ++ +T I H S
Sbjct: 135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVTH--SMSY 191
Query: 245 FALFDDLFLLSGGETVYFG 263
D + ++SGG+ G
Sbjct: 192 LPQVDVIIVMSGGKISEMG 210
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 33/229 (14%)
Query: 20 DNKTISFDRAAARGTFLVWENLFAVLPNFGNNKPTKRLLQGLYGYAEPGRIMAIMGPSGS 79
+N + D G + ++L A GN +L+ + PG+ + ++G +GS
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNA-----ILENISFSISPGQRVGLLGRTGS 58
Query: 80 GKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAY------VTQENVLLGTLTVRE 133
GKSTLL + L+ G + +G DS L V + V + + T R+
Sbjct: 59 GKSTLLSAFLRLLN----TEGEIQIDG--VSWDSITLEQWRKAFGVIPQKVFIFSGTFRK 112
Query: 134 TITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGG------EKK 187
+ +A + S ++I D E+GL + G + GG K+
Sbjct: 113 NLDPNA------AHSDQEIWKVAD----EVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162
Query: 188 RLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISS 236
+ +A +L+K ++L LDEPS+ LD + + +TL+ D ++
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 35/161 (21%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLA-----GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
R I GP+G GKSTL+ ++A G ++ T V + T D+ VL +V +
Sbjct: 461 ARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFES 520
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
V GT KE IK ++E G D +I + +S
Sbjct: 521 GV--GT--------------------KEAIKD----KLIEFGF---TDEMIA-MPISALS 550
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL 223
GG K +L++A +L +L LDEP++ LD+ + +++ L
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 172 VIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDEPSSGLDSAS 215
++ + +RG+SGG+K +L +A +P L+ LDEP++ LD S
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 71 MAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQ 121
+A++GP+G+GKSTL++ L G L + T ++ + R+ AY+ Q
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL----LPTSGEVYTHENCRI-----AYIKQ 743
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 37/204 (18%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVI-MTGNVLFNGKKTRVDSGVLAYVTQE 122
E G ++AI G +GSGK++LL + G L S +I +G V F + + + G + +E
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTI----KE 117
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++Y + R S + ++ I + D +TV+G + +S
Sbjct: 118 NIIFG-------VSYDEY-RYKSVVKACQLQQD----ITKFAEQD--NTVLGEGGVT-LS 162
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISS---- 236
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 237 ---------IHQPSSEVFALFDDL 251
+HQ SS + F +L
Sbjct: 223 LRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 37/204 (18%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVI-MTGNVLFNGKKTRVDSGVLAYVTQE 122
E G ++AI G +GSGK++LL + G L S +I +G V F + + + G + +E
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTI----KE 117
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++Y + R S + ++ I + D +TV+G + +S
Sbjct: 118 NIIFG-------VSYDEY-RYKSVVKACQLQQD----ITKFAEQD--NTVLGEGGVT-LS 162
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISS---- 236
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 237 ---------IHQPSSEVFALFDDL 251
+HQ SS + F +L
Sbjct: 223 LRKADKILILHQGSSYFYGTFSEL 246
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 35/161 (21%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLA-----GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
R I GP+G GKSTL ++A G ++ T V + T D+ VL +V +
Sbjct: 461 ARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFES 520
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
V GT KE IK ++E G D I + +S
Sbjct: 521 GV--GT--------------------KEAIKD----KLIEFGF---TDEXIAX-PISALS 550
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL 223
GG K +L++A +L +L LDEP++ LD+ + +++ L
Sbjct: 551 GGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206
+++++I+ H LGL ++ + +RG+SGG+K +L +A +P L+ LDE
Sbjct: 875 LTRKEIEEHCS----XLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 207 PSSGLDSAS 215
P++ LD S
Sbjct: 928 PTNYLDRDS 936
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 71 MAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQ 121
+A++GP+G+GKSTL++ L G L + T ++ + R+ AY+ Q
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL----LPTSGEVYTHENCRI-----AYIKQ 743
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 35/161 (21%)
Query: 68 GRIMAIMGPSGSGKSTLLDSLA-----GRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
R I GP+G GKSTL ++A G ++ T V + T D+ VL +V +
Sbjct: 455 ARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFES 514
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
V GT KE IK ++E G D I + +S
Sbjct: 515 GV--GT--------------------KEAIKD----KLIEFGF---TDEXIAX-PISALS 544
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLDSASAFFVIQTL 223
GG K +L++A +L +L LDEP++ LD+ + +++ L
Sbjct: 545 GGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 147 MSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGISGGEKKRLSIALEILTKPQLLFLDE 206
+++++I+ H LGL ++ + +RG+SGG+K +L +A +P L+ LDE
Sbjct: 869 LTRKEIEEHCS----XLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 921
Query: 207 PSSGLDSAS 215
P++ LD S
Sbjct: 922 PTNYLDRDS 930
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 71 MAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQ 121
+A++GP+G+GKSTL++ L G L + T ++ + R+ AY+ Q
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL----LPTSGEVYTHENCRI-----AYIKQ 737
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 37/204 (18%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVI-MTGNVLFNGKKTRVDSGVLAYVTQE 122
E G ++AI G +GSGK++LL + G L S +I +G V F + + + G + +E
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTI----KE 117
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++Y + R S + ++ I + D +TV+G + +S
Sbjct: 118 NIIRG-------VSYDEY-RYKSVVKACQLQQD----ITKFAEQD--NTVLGEGGVT-LS 162
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISS---- 236
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 237 ---------IHQPSSEVFALFDDL 251
+HQ SS + F +L
Sbjct: 223 LRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 37/204 (18%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVI-MTGNVLFNGKKTRVDSGVLAYVTQE 122
E G ++AI G +GSGK++LL + G L S +I +G V F + + + G + +E
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTI----KE 117
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++Y + R S + ++ I + D +TV+G + +S
Sbjct: 118 NIISG-------VSYDEY-RYKSVVKACQLQQD----ITKFAEQD--NTVLGEGGVT-LS 162
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISS---- 236
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 237 ---------IHQPSSEVFALFDDL 251
+HQ SS + F +L
Sbjct: 223 LRKADKILILHQGSSYFYGTFSEL 246
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS---RHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
E G+++A+ G +G+GK++LL + G L + +G + F + + + G + +E
Sbjct: 44 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 99
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++ E Y + + +EDI + + V+G + +S
Sbjct: 100 NIIFG-VSYDE---YRYRSVIKACQLEEDISKFAEKD----------NIVLGEGGIT-LS 144
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISSIHQP 240
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 145 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 200
Query: 241 SSEVFALFDDLFLLSGGETVYFG 263
E D + +L G + ++G
Sbjct: 201 KMEHLKKADKILILHEGSSYFYG 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS---RHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
E G+++A+ G +G+GK++LL + G L + +G + F + + + G + +E
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 87
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++ E Y + + +EDI + + V+G + +S
Sbjct: 88 NIIFG-VSYDE---YRYRSVIKACQLEEDISKFAEKD----------NIVLGEGGIT-LS 132
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISSIHQP 240
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 188
Query: 241 SSEVFALFDDLFLLSGGETVYFG 263
E D + +L G + ++G
Sbjct: 189 KMEHLKKADKILILHEGSSYFYG 211
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLS---RHVIMTGNVLFNGKKTRVDSGVLAYVTQE 122
E G+++A+ G +G+GK++LL + G L + +G + F + + + G + +E
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI----KE 117
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ G ++ E Y + + +EDI + + V+G + +S
Sbjct: 118 NIIAG-VSYDE---YRYRSVIKACQLEEDISKFAEKD----------NIVLGEGGIT-LS 162
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISSIHQP 240
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS---- 218
Query: 241 SSEVFALFDDLFLLSGGETVYFG 263
E D + +L G + ++G
Sbjct: 219 KMEHLKKADKILILHEGSSYFYG 241
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 38/204 (18%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRL--SRHVI-MTGNVLFNGKKTRVDSGVLAYVTQE 122
E G ++AI G +GSGK++LL + G L S +I +G V F + + + G + +E
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTI----KE 117
Query: 123 NVLLGTLTVRETITYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLRGIS 182
N++ ++Y + R S + ++ I + D +TV+G + +S
Sbjct: 118 NII--------GVSYDEY-RYKSVVKACQLQQD----ITKFAEQD--NTVLGEGGVT-LS 161
Query: 183 GGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISS---- 236
GG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 221
Query: 237 ---------IHQPSSEVFALFDDL 251
+HQ SS + F +L
Sbjct: 222 LRKADKILILHQGSSYFYGTFSEL 245
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVL 125
E G+++A+ G +G+GK++LL + G L GK SG +++ +Q + +
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---------EGKIKH--SGRISFCSQNSWI 110
Query: 126 LGTLTVRETI------TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLR 179
+ T++E I Y + + +EDI + + LG
Sbjct: 111 MPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT---------- 159
Query: 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISSI 237
+SGG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS- 217
Query: 238 HQPSSEVFALFDDLFLLSGGETVYFG 263
E D + +L G + ++G
Sbjct: 218 ---KMEHLKKADKILILHEGSSYFYG 240
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 35/206 (16%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVL 125
E G+++A+ G +G+GK++LL + G L GK SG +++ +Q N
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---------EGKIKH--SGRISFCSQ-NSW 109
Query: 126 LGTLTVRETI------TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLR 179
+ T++E I Y + + +EDI + + LG
Sbjct: 110 IMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT---------- 159
Query: 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISSI 237
+SGG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS- 217
Query: 238 HQPSSEVFALFDDLFLLSGGETVYFG 263
E D + +L G + ++G
Sbjct: 218 ---KMEHLKKADKILILHEGSSYFYG 240
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 181 ISGGEKKRLSIALEILTKPQ--LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH 238
+SGGE +R+ +A +I ++ L LDEPS GL +I TL+++ G T+I H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 239 QPSSEVFALFDDLFLLSGGETVYFGEA--------------KLAVEFFAEAGF-PCPS-R 282
+ + A D L + G ++ GE L ++ + F P P+ R
Sbjct: 263 DEDTMLAA--DYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAER 320
Query: 283 RNPSDHFLRCVNS 295
R P +L V +
Sbjct: 321 RRPDGRWLEVVGA 333
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 181 ISGGEKKRLSIALEILTKPQ---LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A E+ + L LDEP++GL ++ L + +G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 238 HQ 239
H
Sbjct: 604 HN 605
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 181 ISGGEKKRLSIALEILTKPQ--LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH 238
+SGGE +R+ +A +I ++ L LDEPS GL +I TL+++ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 239 QPSSEVFALFDDLFLLSGGETVYFGEA--------------KLAVEFFAEAGF-PCPS-R 282
+ + A D L + G ++ GE L ++ + F P P+ R
Sbjct: 565 DEDTMLAA--DYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPIPAER 622
Query: 283 RNPSDHFLRCVNS 295
R P +L V +
Sbjct: 623 RRPDGRWLEVVGA 635
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 181 ISGGEKKRLSIALEILTKPQ---LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A E+ + L LDEP++GL ++ L + +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 238 H 238
H
Sbjct: 906 H 906
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 66 EPGRIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVL 125
E G+++A+ G +G+GK++LL + G L GK SG +++ +Q + +
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPS---------EGKIKH--SGRISFCSQFSWI 80
Query: 126 LGTLTVRETI------TYSAHLRLPSSMSKEDIKSHVDGTILELGLHDCADTVIGNWHLR 179
+ T++E I Y + + +EDI + + V+G +
Sbjct: 81 MPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKD----------NIVLGEGGIT 129
Query: 180 GISGGEKKRLSIALEILTKPQLLFLDEPSSGLD--SASAFFVIQTLRNIARDGRTVISSI 237
+SGG++ R+S+A + L LD P LD + F + +A R +++S
Sbjct: 130 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS- 187
Query: 238 HQPSSEVFALFDDLFLLSGGETVYFG 263
E D + +L G + ++G
Sbjct: 188 ---KMEHLKKADKILILHEGSSYFYG 210
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 181 ISGGEKKRLSIALEILTKPQ--LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH 238
+SGGE +R+ +A +I ++ L LDEPS GL +I TL++ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 239 QPSSEVFALFDDLFL-------LSGGETVYFGEAK--------LAVEFFAEAGF-PCPS- 281
+ + A D + + GGE V G + L ++ + F P P+
Sbjct: 565 DEDTXLAA---DYLIDIGPGAGIHGGEVVAAGTPEEVXNDPNSLTGQYLSGKKFIPIPAE 621
Query: 282 RRNPSDHFLRCVNS 295
RR P +L V +
Sbjct: 622 RRRPDGRWLEVVGA 635
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 181 ISGGEKKRLSIALEILTKPQ---LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A E+ + L LDEP++GL ++ L + +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 238 H 238
H
Sbjct: 906 H 906
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 181 ISGGEKKRLSIALEILTKPQ---LLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A E+ + + LDEP++GL A + + L + G TVI+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 238 HQ 239
H+
Sbjct: 791 HK 792
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 181 ISGGEKKRLSIALEILTKPQLLF-----LDEPSSGLDSASAFFVIQTLRNIARDGRTVIS 235
+S GE +RL +A ++ + LF LDEPS+GL A ++ L N+ R G ++
Sbjct: 380 LSPGELQRLRLATQLYSN---LFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436
Query: 236 SIH 238
H
Sbjct: 437 VEH 439
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 172 VIGNWHL----RGISGGEKKRLSIAL-----EILT-KPQLLFLDEPSSGLDSASAFFVIQ 221
+I +W + RG+SGGE+ +SI+L E+ + + F+DE S LD+ + +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 222 TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260
L+ + R + ++ H E FD ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 181 ISGGEKKRLSIALEIL---TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A E+ T L LDEP+ GL +++ L + G TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 238 HQ 239
H
Sbjct: 866 HN 867
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 181 ISGGEKKRLSIALEI---LTKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A +I LT + LDEP+ GL +I+TL+ + G TVI
Sbjct: 465 LSGGESQRIRLATQIGSGLTG-VIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523
Query: 238 HQ 239
H
Sbjct: 524 HD 525
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 172 VIGNWHL----RGISGGEKKRLSIAL-----EILT-KPQLLFLDEPSSGLDSASAFFVIQ 221
+I +W + RG+SGGE+ +SI+L E+ + + F+DE S LD+ + +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 222 TLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETV 260
L+ + R + ++ H E FD ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
>pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 413 VGTGYTAILARISCGAFITGFMTFMSIGGFPSFIEEMKIFYHEKLNGYYGVTV 465
G + +LA+++CG T +S G P +M I L G G +V
Sbjct: 217 AGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV 269
>pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 413 VGTGYTAILARISCGAFITGFMTFMSIGGFPSFIEEMKIFYHEKLNGYYGVTV 465
G + +LA+++CG T +S G P +M I L G G +V
Sbjct: 217 AGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV 269
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 181 ISGGEKKRLSIALEILTK--PQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSIH 238
+SGGE +R+ +A +I + L LDEPS GL +I+TL + G T+I H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 239 QPSS 242
+
Sbjct: 582 DEDT 585
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 181 ISGGEKKRLSIALEIL---TKPQLLFLDEPSSGLDSASAFFVIQTLRNIARDGRTVISSI 237
+SGGE +R+ +A E+ T + LDEP++GL ++ + + G TVI
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 238 H 238
H
Sbjct: 924 H 924
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 55 KRLLQGLYGYAEPG------RIMAIMGPSGSGKSTLLDSL 88
K L+G + P R+ AI+GP+GSGKS ++D++
Sbjct: 5 KLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV 102
++ I GPSG+GK TL ++A L H++ +G +
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV 102
++ I GPSG+GK TL ++A L H++ +G +
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 70 IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV 102
++ I GPSG+GK TL ++A L H++ +G +
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 66 EPGR-IMAIMGPSGSGKSTLLDSLAGRLS 93
+PGR ++A+ G GSGKSTL + LA LS
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 57 LLQGLYGYAE-PGR-----------IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNV 102
L QG G E PGR ++ + GPSG+GK TL +LA L+ ++ +G +
Sbjct: 4 LFQGPLGSPEFPGRLERPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 59 QGLYGYAEPGRIMAIMGPSGSGKSTLLDSL 88
+ LY R + I GPSG+GKSTLL L
Sbjct: 8 ENLYFQGSMSRPIVISGPSGTGKSTLLKKL 37
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 67 PGR-IMAIMGPSGSGKSTLLDSLAGRLSRHVIMTG 100
PG ++A+ GPSG+GKS++ LA +L + TG
Sbjct: 2 PGSMVVAVDGPSGTGKSSVAKELARQLGASYLDTG 36
>pdb|3ROS|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase
From Lactobacillus Acidophilus
Length = 484
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 211 LDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDD 250
+DS AFF L +IA+D + P +EVF + DD
Sbjct: 337 IDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDD 376
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 73 IMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLL 126
I+GP GSGK T+ +A + +G+ L K + G +A E LL
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLL 63
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 73 IMGPSGSGKSTLLDSLAGRLSRHVIMTGNVLFNGKKTRVDSGVLAYVTQENVLL 126
I+GP GSGK T+ +A + +G+ L K + G +A E LL
Sbjct: 32 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLL 85
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 69 RIMAIMGPSGSGKSTLLDSLAGRLSRHVIMTGNVL 103
++ I GP+G GKST LA +L + G+++
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,119,191
Number of Sequences: 62578
Number of extensions: 771120
Number of successful extensions: 1989
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 165
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)